Genetic algorithms as discovery programs
Hilliard, M.R.; Liepins, G.
1986-01-01
Genetic algorithms are mathematical counterparts to natural selection and gene recombination. As such, they have provided one of the few significant breakthroughs in machine learning. Used with appropriate reward functions and apportionment of credit, they have been successfully applied to gas pipeline operation, x-ray registration and mathematical optimization problems. This paper discusses the basics of genetic algorithms, describes a few successes, and reports on current progress at Oak Ridge National Laboratory in applications to set covering and simulated robots.
Evolving evolutionary algorithms using linear genetic programming.
Oltean, Mihai
2005-01-01
A new model for evolving Evolutionary Algorithms is proposed in this paper. The model is based on the Linear Genetic Programming (LGP) technique. Every LGP chromosome encodes an EA which is used for solving a particular problem. Several Evolutionary Algorithms for function optimization, the Traveling Salesman Problem and the Quadratic Assignment Problem are evolved by using the considered model. Numerical experiments show that the evolved Evolutionary Algorithms perform similarly and sometimes even better than standard approaches for several well-known benchmarking problems.
NASA Technical Reports Server (NTRS)
Wang, Lui; Bayer, Steven E.
1991-01-01
Genetic algorithms are mathematical, highly parallel, adaptive search procedures (i.e., problem solving methods) based loosely on the processes of natural genetics and Darwinian survival of the fittest. Basic genetic algorithms concepts are introduced, genetic algorithm applications are introduced, and results are presented from a project to develop a software tool that will enable the widespread use of genetic algorithm technology.
EVOLVING RETRIEVAL ALGORITHMS WITH A GENETIC PROGRAMMING SCHEME
J. THEILER; ET AL
1999-06-01
The retrieval of scene properties (surface temperature, material type, vegetation health, etc.) from remotely sensed data is the ultimate goal of many earth observing satellites. The algorithms that have been developed for these retrievals are informed by physical models of how the raw data were generated. This includes models of radiation as emitted and/or rejected by the scene, propagated through the atmosphere, collected by the optics, detected by the sensor, and digitized by the electronics. To some extent, the retrieval is the inverse of this ''forward'' modeling problem. But in contrast to this forward modeling, the practical task of making inferences about the original scene usually requires some ad hoc assumptions, good physical intuition, and a healthy dose of trial and error. The standard MTI data processing pipeline will employ algorithms developed with this traditional approach. But we will discuss some preliminary research on the use of a genetic programming scheme to ''evolve'' retrieval algorithms. Such a scheme cannot compete with the physical intuition of a remote sensing scientist, but it may be able to automate some of the trial and error. In this scenario, a training set is used, which consists of multispectral image data and the associated ''ground truth;'' that is, a registered map of the desired retrieval quantity. The genetic programming scheme attempts to combine a core set of image processing primitives to produce an IDL (Interactive Data Language) program which estimates this retrieval quantity from the raw data.
Software For Genetic Algorithms
NASA Technical Reports Server (NTRS)
Wang, Lui; Bayer, Steve E.
1992-01-01
SPLICER computer program is genetic-algorithm software tool used to solve search and optimization problems. Provides underlying framework and structure for building genetic-algorithm application program. Written in Think C.
Integer programming model for optimizing bus timetable using genetic algorithm
NASA Astrophysics Data System (ADS)
Wihartiko, F. D.; Buono, A.; Silalahi, B. P.
2017-01-01
Bus timetable gave an information for passengers to ensure the availability of bus services. Timetable optimal condition happened when bus trips frequency could adapt and suit with passenger demand. In the peak time, the number of bus trips would be larger than the off-peak time. If the number of bus trips were more frequent than the optimal condition, it would make a high operating cost for bus operator. Conversely, if the number of trip was less than optimal condition, it would make a bad quality service for passengers. In this paper, the bus timetabling problem would be solved by integer programming model with modified genetic algorithm. Modification was placed in the chromosomes design, initial population recovery technique, chromosomes reconstruction and chromosomes extermination on specific generation. The result of this model gave the optimal solution with accuracy 99.1%.
Bardsiri, Mahshid Khatibi; Eftekhari, Mahdi; Mousavi, Reza
2015-01-01
In this study the problem of protein fold recognition, that is a classification task, is solved via a hybrid of evolutionary algorithms namely multi-gene Genetic Programming (GP) and Genetic Algorithm (GA). Our proposed method consists of two main stages and is performed on three datasets taken from the literature. Each dataset contains different feature groups and classes. In the first step, multi-gene GP is used for producing binary classifiers based on various feature groups for each class. Then, different classifiers obtained for each class are combined via weighted voting so that the weights are determined through GA. At the end of the first step, there is a separate binary classifier for each class. In the second stage, the obtained binary classifiers are combined via GA weighting in order to generate the overall classifier. The final obtained classifier is superior to the previous works found in the literature in terms of classification accuracy.
Moore, J H
1995-06-01
A genetic algorithm for instrumentation control and optimization was developed using the LabVIEW graphical programming environment. The usefulness of this methodology for the optimization of a closed loop control instrument is demonstrated with minimal complexity and the programming is presented in detail to facilitate its adaptation to other LabVIEW applications. Closed loop control instruments have variety of applications in the biomedical sciences including the regulation of physiological processes such as blood pressure. The program presented here should provide a useful starting point for those wishing to incorporate genetic algorithm approaches to LabVIEW mediated optimization of closed loop control instruments.
Evolving a Nelder-Mead Algorithm for Optimization with Genetic Programming.
Fajfar, Iztok; Puhan, Janez; Bűrmen, Árpád
2016-01-25
We used genetic programming to evolve a direct search optimization algorithm, similar to that of the standard downhill simplex optimization method proposed by Nelder and Mead (1965). In the training process, we used several ten-dimensional quadratic functions with randomly displaced parameters and different randomly generated starting simplices. The genetically obtained optimization algorithm showed overall better performance than the original Nelder-Mead method on a standard set of test functions. We observed that many parts of the genetically produced algorithm were seldom or never executed, which allowed us to greatly simplify the algorithm by removing the redundant parts. The resulting algorithm turns out to be considerably simpler than the original Nelder-Mead method while still performing better than the original method.
Genetic-program-based data mining for hybrid decision-theoretic algorithms and theories
NASA Astrophysics Data System (ADS)
Smith, James F., III
2005-03-01
A genetic program (GP) based data mining (DM) procedure has been developed that automatically creates decision theoretic algorithms. A GP is an algorithm that uses the theory of evolution to automatically evolve other computer programs or mathematical expressions. The output of the GP is a computer program or mathematical expression that is optimal in the sense that it maximizes a fitness function. The decision theoretic algorithms created by the DM algorithm are typically designed for making real-time decisions about the behavior of systems. The database that is mined by the DM typically consists of many scenarios characterized by sensor output and labeled by experts as to the status of the scenario. The DM procedure will call a GP as a data mining function. The GP incorporates the database and expert"s rules into its fitness function to evolve an optimal decision theoretic algorithm. A decision theoretic algorithm created through this process will be discussed as well as validation efforts showing the utility of the decision theoretic algorithm created by the DM process. GP based data mining to determine equations related to scientific theories and automatic simplification methods based on computer algebra will also be discussed.
NASA Astrophysics Data System (ADS)
Sastry, Kumara Narasimha
2007-03-01
Effective and efficient rnultiscale modeling is essential to advance both the science and synthesis in a, wide array of fields such as physics, chemistry, materials science; biology, biotechnology and pharmacology. This study investigates the efficacy and potential of rising genetic algorithms for rnultiscale materials modeling and addresses some of the challenges involved in designing competent algorithms that solve hard problems quickly, reliably and accurately. In particular, this thesis demonstrates the use of genetic algorithms (GAs) and genetic programming (GP) in multiscale modeling with the help of two non-trivial case studies in materials science and chemistry. The first case study explores the utility of genetic programming (GP) in multi-timescaling alloy kinetics simulations. In essence, GP is used to bridge molecular dynamics and kinetic Monte Carlo methods to span orders-of-magnitude in simulation time. Specifically, GP is used to regress symbolically an inline barrier function from a limited set of molecular dynamics simulations to enable kinetic Monte Carlo that simulate seconds of real time. Results on a non-trivial example of vacancy-assisted migration on a surface of a face-centered cubic (fcc) Copper-Cobalt (CuxCo 1-x) alloy show that GP predicts all barriers with 0.1% error from calculations for less than 3% of active configurations, independent of type of potentials used to obtain the learning set of barriers via molecular dynamics. The resulting method enables 2--9 orders-of-magnitude increase in real-time dynamics simulations taking 4--7 orders-of-magnitude less CPU time. The second case study presents the application of multiobjective genetic algorithms (MOGAs) in multiscaling quantum chemistry simulations. Specifically, MOGAs are used to bridge high-level quantum chemistry and semiempirical methods to provide accurate representation of complex molecular excited-state and ground-state behavior. Results on ethylene and benzene---two common
Li, Zhenping; Zhang, Xiang-Sun; Wang, Rui-Sheng; Liu, Hongwei; Zhang, Shihua
2013-01-01
Identification of communities in complex networks is an important topic and issue in many fields such as sociology, biology, and computer science. Communities are often defined as groups of related nodes or links that correspond to functional subunits in the corresponding complex systems. While most conventional approaches have focused on discovering communities of nodes, some recent studies start partitioning links to find overlapping communities straightforwardly. In this paper, we propose a new quantity function for link community identification in complex networks. Based on this quantity function we formulate the link community partition problem into an integer programming model which allows us to partition a complex network into overlapping communities. We further propose a genetic algorithm for link community detection which can partition a network into overlapping communities without knowing the number of communities. We test our model and algorithm on both artificial networks and real-world networks. The results demonstrate that the model and algorithm are efficient in detecting overlapping community structure in complex networks.
Mabu, Shingo; Hirasawa, Kotaro; Hu, Jinglu
2007-01-01
This paper proposes a graph-based evolutionary algorithm called Genetic Network Programming (GNP). Our goal is to develop GNP, which can deal with dynamic environments efficiently and effectively, based on the distinguished expression ability of the graph (network) structure. The characteristics of GNP are as follows. 1) GNP programs are composed of a number of nodes which execute simple judgment/processing, and these nodes are connected by directed links to each other. 2) The graph structure enables GNP to re-use nodes, thus the structure can be very compact. 3) The node transition of GNP is executed according to its node connections without any terminal nodes, thus the past history of the node transition affects the current node to be used and this characteristic works as an implicit memory function. These structural characteristics are useful for dealing with dynamic environments. Furthermore, we propose an extended algorithm, "GNP with Reinforcement Learning (GNPRL)" which combines evolution and reinforcement learning in order to create effective graph structures and obtain better results in dynamic environments. In this paper, we applied GNP to the problem of determining agents' behavior to evaluate its effectiveness. Tileworld was used as the simulation environment. The results show some advantages for GNP over conventional methods.
Genetic Algorithms: A gentle introduction
Jong, K.D.
1994-12-31
Information is presented on genetic algorithms in outline form. The following topics are discussed: how are new samples generated, a genotypic viewpoint, a phenotypic viewpoint, an optimization viewpoint, an intuitive view, parameter optimization problems, evolving production rates, genetic programming, GAs and NNs, formal analysis, Lemmas and theorems, discrete Walsh transforms, deceptive problems, Markov chain analysis, and PAC learning analysis.
Constraints in Genetic Programming
NASA Technical Reports Server (NTRS)
Janikow, Cezary Z.
1996-01-01
Genetic programming refers to a class of genetic algorithms utilizing generic representation in the form of program trees. For a particular application, one needs to provide the set of functions, whose compositions determine the space of program structures being evolved, and the set of terminals, which determine the space of specific instances of those programs. The algorithm searches the space for the best program for a given problem, applying evolutionary mechanisms borrowed from nature. Genetic algorithms have shown great capabilities in approximately solving optimization problems which could not be approximated or solved with other methods. Genetic programming extends their capabilities to deal with a broader variety of problems. However, it also extends the size of the search space, which often becomes too large to be effectively searched even by evolutionary methods. Therefore, our objective is to utilize problem constraints, if such can be identified, to restrict this space. In this publication, we propose a generic constraint specification language, powerful enough for a broad class of problem constraints. This language has two elements -- one reduces only the number of program instances, the other reduces both the space of program structures as well as their instances. With this language, we define the minimal set of complete constraints, and a set of operators guaranteeing offspring validity from valid parents. We also show that these operators are not less efficient than the standard genetic programming operators if one preprocesses the constraints - the necessary mechanisms are identified.
NASA Astrophysics Data System (ADS)
Gladwin, D.; Stewart, P.; Stewart, J.
2011-02-01
This article addresses the problem of maintaining a stable rectified DC output from the three-phase AC generator in a series-hybrid vehicle powertrain. The series-hybrid prime power source generally comprises an internal combustion (IC) engine driving a three-phase permanent magnet generator whose output is rectified to DC. A recent development has been to control the engine/generator combination by an electronically actuated throttle. This system can be represented as a nonlinear system with significant time delay. Previously, voltage control of the generator output has been achieved by model predictive methods such as the Smith Predictor. These methods rely on the incorporation of an accurate system model and time delay into the control algorithm, with a consequent increase in computational complexity in the real-time controller, and as a necessity relies to some extent on the accuracy of the models. Two complementary performance objectives exist for the control system. Firstly, to maintain the IC engine at its optimal operating point, and secondly, to supply a stable DC supply to the traction drive inverters. Achievement of these goals minimises the transient energy storage requirements at the DC link, with a consequent reduction in both weight and cost. These objectives imply constant velocity operation of the IC engine under external load disturbances and changes in both operating conditions and vehicle speed set-points. In order to achieve these objectives, and reduce the complexity of implementation, in this article a controller is designed by the use of Genetic Programming methods in the Simulink modelling environment, with the aim of obtaining a relatively simple controller for the time-delay system which does not rely on the implementation of real time system models or time delay approximations in the controller. A methodology is presented to utilise the miriad of existing control blocks in the Simulink libraries to automatically evolve optimal control
NASA Astrophysics Data System (ADS)
Liu, Hua-Long; Liu, Hua-Dong
2014-10-01
Partial discharge (PD) in power transformers is one of the prime reasons resulting in insulation degradation and power faults. Hence, it is of great importance to study the techniques of the detection and localization of PD in theory and practice. The detection and localization of PD employing acoustic emission (AE) techniques, as a kind of non-destructive testing, plus due to the advantages of powerful capability of locating and high precision, have been paid more and more attention. The localization algorithm is the key factor to decide the localization accuracy in AE localization of PD. Many kinds of localization algorithms exist for the PD source localization adopting AE techniques including intelligent and non-intelligent algorithms. However, the existed algorithms possess some defects such as the premature convergence phenomenon, poor local optimization ability and unsuitability for the field applications. To overcome the poor local optimization ability and easily caused premature convergence phenomenon of the fundamental genetic algorithm (GA), a new kind of improved GA is proposed, namely the sequence quadratic programming-genetic algorithm (SQP-GA). For the hybrid optimization algorithm, SQP-GA, the sequence quadratic programming (SQP) algorithm which is used as a basic operator is integrated into the fundamental GA, so the local searching ability of the fundamental GA is improved effectively and the premature convergence phenomenon is overcome. Experimental results of the numerical simulations of benchmark functions show that the hybrid optimization algorithm, SQP-GA, is better than the fundamental GA in the convergence speed and optimization precision, and the proposed algorithm in this paper has outstanding optimization effect. At the same time, the presented SQP-GA in the paper is applied to solve the ultrasonic localization problem of PD in transformers, then the ultrasonic localization method of PD in transformers based on the SQP-GA is proposed. And
Genetic Algorithms and Local Search
NASA Technical Reports Server (NTRS)
Whitley, Darrell
1996-01-01
The first part of this presentation is a tutorial level introduction to the principles of genetic search and models of simple genetic algorithms. The second half covers the combination of genetic algorithms with local search methods to produce hybrid genetic algorithms. Hybrid algorithms can be modeled within the existing theoretical framework developed for simple genetic algorithms. An application of a hybrid to geometric model matching is given. The hybrid algorithm yields results that improve on the current state-of-the-art for this problem.
NASA Astrophysics Data System (ADS)
Qiu, J. P.; Niu, D. X.
Micro-grid is one of the key technologies of the future energy supplies. Take economic planning. reliability, and environmental protection of micro grid as a basis for the analysis of multi-strategy objective programming problems for micro grid which contains wind power, solar power, and battery and micro gas turbine. Establish the mathematical model of each power generation characteristics and energy dissipation. and change micro grid planning multi-objective function under different operating strategies to a single objective model based on AHP method. Example analysis shows that in combination with dynamic ant mixed genetic algorithm can get the optimal power output of this model.
Inversion of oceanic constituents in case I and II waters with genetic programming algorithms.
Chami, Malik; Robilliard, Denis
2002-10-20
A stochastic inverse technique based on agenetic programming (GP) algorithm was developed toinvert oceanic constituents from simulated data for case I and case II water applications. The simulations were carried out with the Ordre Successifs Ocean Atmosphere (OSOA) radiative transfer model. They include the effects of oceanic substances such as algal-related chlorophyll, nonchlorophyllous suspended matter, and dissolved organic matter. The synthetic data set also takes into account the directional effects of particles through a variation of their phase function that makes the simulated data realistic. It is shown that GP can be successfully applied to the inverse problem with acceptable stability in the presence of realistic noise in the data. GP is compared with neural network methodology for case I waters; GP exhibits similar retrieval accuracy, which is greater than for traditional techniques such as band ratio algorithms. The application of GP to real satellite data [a Sea-viewing Wide Field-of-view Sensor (SeaWiFS)] was also carried out for case I waters as a validation. Good agreement was obtained when GP results were compared with the SeaWiFS empirical algorithm. For case II waters the accuracy of GP is less than 33%, which remains satisfactory, at the present time, for remote-sensing purposes.
Mousavi, Seyed Mahmoud; Husseinzadeh, Danial; Alikhani, Sadegh
2014-04-01
Efficient models are required to predict the optimum values of ozone concentration in different levels of its precursors' concentrations and temperatures. A novel model based on the application of a genetic programming (GP) optimization is presented in this article. Ozone precursors' concentrations and run time average temperature have been chosen as model's parameters. Generalization performances of two different homemade models based on genetic programming and genetic algorithm (GA), which can be used for calculating theoretical ozone concentration, are compared with conventional semi-empirical model performance. Experimental data of Mashhad city ambient air have been employed to investigate the prediction ability of properly trained GP, GA, and conventional semi-empirical models. It is clearly demonstrated that the in-house algorithm which is used for the model based on GP, provides better generalization performance over the model optimized with GA and the conventional semi-empirical ones. The proposed model is found accurate enough and can be used for urban air ozone concentration prediction.
Optimization of Water Distribution and Water Quality by Genetic Algorithm and Nonlinear Programming
NASA Astrophysics Data System (ADS)
Tu, M.; Tsai, F. T.; Yeh, W. W.
2001-12-01
When managing a regional water distribution system, it is not only important to optimize water allocation but also to meet the desired water quality requirements. This paper develops a multicommodity flow model that can be used to optimize water distribution and water quality in a regional water supply system. Waters from different sources with different quality are considered as distinct commodities, which concurrently share a single water distribution system. Volumetric water blend is used to represent water quality in the proposed model. The multicommodity model is capable of handling two-way flow pipes, as represented undirectional arcs, and the perfect mixing condition. Additionally, blending requirements are specified at certain control nodes within the water distribution system to ensure that downstream users receive the desired water quality. The developed multicommodity flow model is imbedded in a nonlinear optimization model. To reduce nonlinearity and to improve convergence, GA is combined with a gradient-based-algorithm to solve the nonlinearly constrained optimization model in that GA is used to search for the optimal direction for all undirectional arcs in the system and iteratively linked with a nonlinear programming solver. The proposed methodology was first tested and verified on a simplified hypothetical system and then applied to the regional water distribution system of the Metropolitan Water District of Southern California. The results obtained indicate that the optimization model can efficiently allocate waters from different sources with different quality to satisfy the blending requirements, the perfect mixing and two-way flow conditions.
A genetic engineering approach to genetic algorithms.
Gero, J S; Kazakov, V
2001-01-01
We present an extension to the standard genetic algorithm (GA), which is based on concepts of genetic engineering. The motivation is to discover useful and harmful genetic materials and then execute an evolutionary process in such a way that the population becomes increasingly composed of useful genetic material and increasingly free of the harmful genetic material. Compared to the standard GA, it provides some computational advantages as well as a tool for automatic generation of hierarchical genetic representations specifically tailored to suit certain classes of problems.
Scheduling with genetic algorithms
NASA Technical Reports Server (NTRS)
Fennel, Theron R.; Underbrink, A. J., Jr.; Williams, George P. W., Jr.
1994-01-01
In many domains, scheduling a sequence of jobs is an important function contributing to the overall efficiency of the operation. At Boeing, we develop schedules for many different domains, including assembly of military and commercial aircraft, weapons systems, and space vehicles. Boeing is under contract to develop scheduling systems for the Space Station Payload Planning System (PPS) and Payload Operations and Integration Center (POIC). These applications require that we respect certain sequencing restrictions among the jobs to be scheduled while at the same time assigning resources to the jobs. We call this general problem scheduling and resource allocation. Genetic algorithms (GA's) offer a search method that uses a population of solutions and benefits from intrinsic parallelism to search the problem space rapidly, producing near-optimal solutions. Good intermediate solutions are probabalistically recombined to produce better offspring (based upon some application specific measure of solution fitness, e.g., minimum flowtime, or schedule completeness). Also, at any point in the search, any intermediate solution can be accepted as a final solution; allowing the search to proceed longer usually produces a better solution while terminating the search at virtually any time may yield an acceptable solution. Many processes are constrained by restrictions of sequence among the individual jobs. For a specific job, other jobs must be completed beforehand. While there are obviously many other constraints on processes, it is these on which we focussed for this research: how to allocate crews to jobs while satisfying job precedence requirements and personnel, and tooling and fixture (or, more generally, resource) requirements.
Messy genetic algorithms: Recent developments
Kargupta, H.
1996-09-01
Messy genetic algorithms define a rare class of algorithms that realize the need for detecting appropriate relations among members of the search domain in optimization. This paper reviews earlier works in messy genetic algorithms and describes some recent developments. It also describes the gene expression messy GA (GEMGA)--an {Omicron}({Lambda}{sup {kappa}}({ell}{sup 2} + {kappa})) sample complexity algorithm for the class of order-{kappa} delineable problems (problems that can be solved by considering no higher than order-{kappa} relations) of size {ell} and alphabet size {Lambda}. Experimental results are presented to demonstrate the scalability of the GEMGA.
Deceptiveness and genetic algorithm dynamics
Liepins, G.E. ); Vose, M.D. )
1990-01-01
We address deceptiveness, one of at least four reasons genetic algorithms can fail to converge to function optima. We construct fully deceptive functions and other functions of intermediate deceptiveness. For the fully deceptive functions of our construction, we generate linear transformations that induce changes of representation to render the functions fully easy. We further model genetic algorithm selection recombination as the interleaving of linear and quadratic operators. Spectral analysis of the underlying matrices allows us to draw preliminary conclusions about fixed points and their stability. We also obtain an explicit formula relating the nonuniform Walsh transform to the dynamics of genetic search. 21 refs.
Genetic algorithm for neural networks optimization
NASA Astrophysics Data System (ADS)
Setyawati, Bina R.; Creese, Robert C.; Sahirman, Sidharta
2004-11-01
This paper examines the forecasting performance of multi-layer feed forward neural networks in modeling a particular foreign exchange rates, i.e. Japanese Yen/US Dollar. The effects of two learning methods, Back Propagation and Genetic Algorithm, in which the neural network topology and other parameters fixed, were investigated. The early results indicate that the application of this hybrid system seems to be well suited for the forecasting of foreign exchange rates. The Neural Networks and Genetic Algorithm were programmed using MATLAB«.
Genetic Algorithm Approaches for Actuator Placement
NASA Technical Reports Server (NTRS)
Crossley, William A.
2000-01-01
This research investigated genetic algorithm approaches for smart actuator placement to provide aircraft maneuverability without requiring hinged flaps or other control surfaces. The effort supported goals of the Multidisciplinary Design Optimization focus efforts in NASA's Aircraft au program. This work helped to properly identify various aspects of the genetic algorithm operators and parameters that allow for placement of discrete control actuators/effectors. An improved problem definition, including better definition of the objective function and constraints, resulted from this research effort. The work conducted for this research used a geometrically simple wing model; however, an increasing number of potential actuator placement locations were incorporated to illustrate the ability of the GA to determine promising actuator placement arrangements. This effort's major result is a useful genetic algorithm-based approach to assist in the discrete actuator/effector placement problem.
Genetic Algorithms as a Tool for Phased Array Radar Design
2002-06-01
NAVAL POSTGRADUATE SCHOOL Monterey, California THESIS Approved for public release; distribution is unlimited. GENETIC ALGORITHMS AS A...REPORT DATE June 2002 3. REPORT TYPE AND DATES COVERED Master’s Thesis 4. TITLE AND SUBTITLE: Genetic Algorithms as a Tool for Phased Array Radar...creative ways to design multi-function phased array radars. This thesis proposes that Genetic Algorithms, computer programs that mimic natural selection
Problem solving with genetic algorithms and Splicer
NASA Technical Reports Server (NTRS)
Bayer, Steven E.; Wang, Lui
1991-01-01
Genetic algorithms are highly parallel, adaptive search procedures (i.e., problem-solving methods) loosely based on the processes of population genetics and Darwinian survival of the fittest. Genetic algorithms have proven useful in domains where other optimization techniques perform poorly. The main purpose of the paper is to discuss a NASA-sponsored software development project to develop a general-purpose tool for using genetic algorithms. The tool, called Splicer, can be used to solve a wide variety of optimization problems and is currently available from NASA and COSMIC. This discussion is preceded by an introduction to basic genetic algorithm concepts and a discussion of genetic algorithm applications.
Predicting Protein Structure Using Parallel Genetic Algorithms.
1994-12-01
By " Predicting rotein Structure D istribticfiar.. ................ Using Parallel Genetic Algorithms ,Avaiu " ’ •"... Dist THESIS I IGeorge H...iiLite-d Approved for public release; distribution unlimited AFIT/ GCS /ENG/94D-03 Predicting Protein Structure Using Parallel Genetic Algorithms ...1-1 1.2 Genetic Algorithms ......... ............................ 1-3 1.3 The Protein Folding Problem
Genetic Algorithm for Optimization: Preprocessor and Algorithm
NASA Technical Reports Server (NTRS)
Sen, S. K.; Shaykhian, Gholam A.
2006-01-01
Genetic algorithm (GA) inspired by Darwin's theory of evolution and employed to solve optimization problems - unconstrained or constrained - uses an evolutionary process. A GA has several parameters such the population size, search space, crossover and mutation probabilities, and fitness criterion. These parameters are not universally known/determined a priori for all problems. Depending on the problem at hand, these parameters need to be decided such that the resulting GA performs the best. We present here a preprocessor that achieves just that, i.e., it determines, for a specified problem, the foregoing parameters so that the consequent GA is a best for the problem. We stress also the need for such a preprocessor both for quality (error) and for cost (complexity) to produce the solution. The preprocessor includes, as its first step, making use of all the information such as that of nature/character of the function/system, search space, physical/laboratory experimentation (if already done/available), and the physical environment. It also includes the information that can be generated through any means - deterministic/nondeterministic/graphics. Instead of attempting a solution of the problem straightway through a GA without having/using the information/knowledge of the character of the system, we would do consciously a much better job of producing a solution by using the information generated/created in the very first step of the preprocessor. We, therefore, unstintingly advocate the use of a preprocessor to solve a real-world optimization problem including NP-complete ones before using the statistically most appropriate GA. We also include such a GA for unconstrained function optimization problems.
Learning Intelligent Genetic Algorithms Using Japanese Nonograms
ERIC Educational Resources Information Center
Tsai, Jinn-Tsong; Chou, Ping-Yi; Fang, Jia-Cen
2012-01-01
An intelligent genetic algorithm (IGA) is proposed to solve Japanese nonograms and is used as a method in a university course to learn evolutionary algorithms. The IGA combines the global exploration capabilities of a canonical genetic algorithm (CGA) with effective condensed encoding, improved fitness function, and modified crossover and…
New Results in Astrodynamics Using Genetic Algorithms
NASA Technical Reports Server (NTRS)
Coverstone-Carroll, V.; Hartmann, J. W.; Williams, S. N.; Mason, W. J.
1998-01-01
Generic algorithms have gained popularity as an effective procedure for obtaining solutions to traditionally difficult space mission optimization problems. In this paper, a brief survey of the use of genetic algorithms to solve astrodynamics problems is presented and is followed by new results obtained from applying a Pareto genetic algorithm to the optimization of low-thrust interplanetary spacecraft missions.
Filter selection using genetic algorithms
NASA Astrophysics Data System (ADS)
Patel, Devesh
1996-03-01
Convolution operators act as matched filters for certain types of variations found in images and have been extensively used in the analysis of images. However, filtering through a bank of N filters generates N filtered images, consequently increasing the amount of data considerably. Moreover, not all these filters have the same discriminatory capabilities for the individual images, thus making the task of any classifier difficult. In this paper, we use genetic algorithms to select a subset of relevant filters. Genetic algorithms represent a class of adaptive search techniques where the processes are similar to natural selection of biological evolution. The steady state model (GENITOR) has been used in this paper. The reduction of filters improves the performance of the classifier (which in this paper is the multi-layer perceptron neural network) and furthermore reduces the computational requirement. In this study we use the Laws filters which were proposed for the analysis of texture images. Our aim is to recognize the different textures on the images using the reduced filter set.
Excursion-Set-Mediated Genetic Algorithm
NASA Technical Reports Server (NTRS)
Noever, David; Baskaran, Subbiah
1995-01-01
Excursion-set-mediated genetic algorithm (ESMGA) is embodiment of method of searching for and optimizing computerized mathematical models. Incorporates powerful search and optimization techniques based on concepts analogous to natural selection and laws of genetics. In comparison with other genetic algorithms, this one achieves stronger condition for implicit parallelism. Includes three stages of operations in each cycle, analogous to biological generation.
Genetic Algorithms Viewed as Anticipatory Systems
NASA Astrophysics Data System (ADS)
Mocanu, Irina; Kalisz, Eugenia; Negreanu, Lorina
2010-11-01
This paper proposes a new version of genetic algorithms—the anticipatory genetic algorithm AGA. The performance evaluation included in the paper shows that AGA is superior to traditional genetic algorithm from both speed and accuracy points of view. The paper also presents how this algorithm can be applied to solve a complex problem: image annotation, intended to be used in content based image retrieval systems.
Flexible ligand docking using a genetic algorithm
NASA Astrophysics Data System (ADS)
Oshiro, C. M.; Kuntz, I. D.; Dixon, J. Scott
1995-04-01
Two computational techniques have been developed to explore the orientational and conformational space of a flexible ligand within an enzyme. Both methods use the Genetic Algorithm (GA) to generate conformationally flexible ligands in conjunction with algorithms from the DOCK suite of programs to characterize the receptor site. The methods are applied to three enzyme-ligand complexes: dihydrofolate reductase-methotrexate, thymidylate synthase-phenolpthalein and HIV protease-thioketal haloperidol. Conformations and orientations close to the crystallographically determined structures are obtained, as well as alternative structures with low energy. The potential for the GA method to screen a database of compounds is also examined. A collection of ligands is evaluated simultaneously, rather than docking the ligands individually into the enzyme.
Fuzzy Information Retrieval Using Genetic Algorithms and Relevance Feedback.
ERIC Educational Resources Information Center
Petry, Frederick E.; And Others
1993-01-01
Describes an approach that combines concepts from information retrieval, fuzzy set theory, and genetic programing to improve weighted Boolean query formulation via relevance feedback. Highlights include background on information retrieval systems; genetic algorithms; subproblem formulation; and preliminary results based on a testbed. (Contains 12…
A synthetic genetic edge detection program.
Tabor, Jeffrey J; Salis, Howard M; Simpson, Zachary Booth; Chevalier, Aaron A; Levskaya, Anselm; Marcotte, Edward M; Voigt, Christopher A; Ellington, Andrew D
2009-06-26
Edge detection is a signal processing algorithm common in artificial intelligence and image recognition programs. We have constructed a genetically encoded edge detection algorithm that programs an isogenic community of E. coli to sense an image of light, communicate to identify the light-dark edges, and visually present the result of the computation. The algorithm is implemented using multiple genetic circuits. An engineered light sensor enables cells to distinguish between light and dark regions. In the dark, cells produce a diffusible chemical signal that diffuses into light regions. Genetic logic gates are used so that only cells that sense light and the diffusible signal produce a positive output. A mathematical model constructed from first principles and parameterized with experimental measurements of the component circuits predicts the performance of the complete program. Quantitatively accurate models will facilitate the engineering of more complex biological behaviors and inform bottom-up studies of natural genetic regulatory networks.
A Synthetic Genetic Edge Detection Program
Tabor, Jeffrey J.; Salis, Howard; Simpson, Zachary B.; Chevalier, Aaron A.; Levskaya, Anselm; Marcotte, Edward M.; Voigt, Christopher A.; Ellington, Andrew D.
2009-01-01
Summary Edge detection is a signal processing algorithm common in artificial intelligence and image recognition programs. We have constructed a genetically encoded edge detection algorithm that programs an isogenic community of E.coli to sense an image of light, communicate to identify the light-dark edges, and visually present the result of the computation. The algorithm is implemented using multiple genetic circuits. An engineered light sensor enables cells to distinguish between light and dark regions. In the dark, cells produce a diffusible chemical signal that diffuses into light regions. Genetic logic gates are used so that only cells that sense light and the diffusible signal produce a positive output. A mathematical model constructed from first principles and parameterized with experimental measurements of the component circuits predicts the performance of the complete program. Quantitatively accurate models will facilitate the engineering of more complex biological behaviors and inform bottom-up studies of natural genetic regulatory networks. PMID:19563759
NASA Astrophysics Data System (ADS)
Hsu, Chih-Ming
2014-12-01
Portfolio optimisation is an important issue in the field of investment/financial decision-making and has received considerable attention from both researchers and practitioners. However, besides portfolio optimisation, a complete investment procedure should also include the selection of profitable investment targets and determine the optimal timing for buying/selling the investment targets. In this study, an integrated procedure using data envelopment analysis (DEA), artificial bee colony (ABC) and genetic programming (GP) is proposed to resolve a portfolio optimisation problem. The proposed procedure is evaluated through a case study on investing in stocks in the semiconductor sub-section of the Taiwan stock market for 4 years. The potential average 6-month return on investment of 9.31% from 1 November 2007 to 31 October 2011 indicates that the proposed procedure can be considered a feasible and effective tool for making outstanding investment plans, and thus making profits in the Taiwan stock market. Moreover, it is a strategy that can help investors to make profits even when the overall stock market suffers a loss.
Genetic-Algorithm Tool For Search And Optimization
NASA Technical Reports Server (NTRS)
Wang, Lui; Bayer, Steven
1995-01-01
SPLICER computer program used to solve search and optimization problems. Genetic algorithms adaptive search procedures (i.e., problem-solving methods) based loosely on processes of natural selection and Darwinian "survival of fittest." Algorithms apply genetically inspired operators to populations of potential solutions in iterative fashion, creating new populations while searching for optimal or nearly optimal solution to problem at hand. Written in Think C.
Saving Resources with Plagues in Genetic Algorithms
de Vega, F F; Cantu-Paz, E; Lopez, J I; Manzano, T
2004-06-15
The population size of genetic algorithms (GAs) affects the quality of the solutions and the time required to find them. While progress has been made in estimating the population sizes required to reach a desired solution quality for certain problems, in practice the sizing of populations is still usually performed by trial and error. These trials might lead to find a population that is large enough to reach a satisfactory solution, but there may still be opportunities to optimize the computational cost by reducing the size of the population. This paper presents a technique called plague that periodically removes a number of individuals from the population as the GA executes. Recently, the usefulness of the plague has been demonstrated for genetic programming. The objective of this paper is to extend the study of plagues to genetic algorithms. We experiment with deceptive trap functions, a tunable difficult problem for GAs, and the experiments show that plagues can save computational time while maintaining solution quality and reliability.
Optical flow optimization using parallel genetic algorithm
NASA Astrophysics Data System (ADS)
Zavala-Romero, Olmo; Botella, Guillermo; Meyer-Bäse, Anke; Meyer Base, Uwe
2011-06-01
A new approach to optimize the parameters of a gradient-based optical flow model using a parallel genetic algorithm (GA) is proposed. The main characteristics of the optical flow algorithm are its bio-inspiration and robustness against contrast, static patterns and noise, besides working consistently with several optical illusions where other algorithms fail. This model depends on many parameters which conform the number of channels, the orientations required, the length and shape of the kernel functions used in the convolution stage, among many more. The GA is used to find a set of parameters which improve the accuracy of the optical flow on inputs where the ground-truth data is available. This set of parameters helps to understand which of them are better suited for each type of inputs and can be used to estimate the parameters of the optical flow algorithm when used with videos that share similar characteristics. The proposed implementation takes into account the embarrassingly parallel nature of the GA and uses the OpenMP Application Programming Interface (API) to speedup the process of estimating an optimal set of parameters. The information obtained in this work can be used to dynamically reconfigure systems, with potential applications in robotics, medical imaging and tracking.
Genetic algorithms for route discovery.
Gelenbe, Erol; Liu, Peixiang; Lainé, Jeremy
2006-12-01
Packet routing in networks requires knowledge about available paths, which can be either acquired dynamically while the traffic is being forwarded, or statically (in advance) based on prior information of a network's topology. This paper describes an experimental investigation of path discovery using genetic algorithms (GAs). We start with the quality-of-service (QoS)-driven routing protocol called "cognitive packet network" (CPN), which uses smart packets (SPs) to dynamically select routes in a distributed autonomic manner based on a user's QoS requirements. We extend it by introducing a GA at the source routers, which modifies and filters the paths discovered by the CPN. The GA can combine the paths that were previously discovered to create new untested but valid source-to-destination paths, which are then selected on the basis of their "fitness." We present an implementation of this approach, where the GA runs in background mode so as not to overload the ingress routers. Measurements conducted on a network test bed indicate that when the background-traffic load of the network is light to medium, the GA can result in improved QoS. When the background-traffic load is high, it appears that the use of the GA may be detrimental to the QoS experienced by users as compared to CPN routing because the GA uses less timely state information in its decision making.
Algorithmic advances in stochastic programming
Morton, D.P.
1993-07-01
Practical planning problems with deterministic forecasts of inherently uncertain parameters often yield unsatisfactory solutions. Stochastic programming formulations allow uncertain parameters to be modeled as random variables with known distributions, but the size of the resulting mathematical programs can be formidable. Decomposition-based algorithms take advantage of special structure and provide an attractive approach to such problems. We consider two classes of decomposition-based stochastic programming algorithms. The first type of algorithm addresses problems with a ``manageable`` number of scenarios. The second class incorporates Monte Carlo sampling within a decomposition algorithm. We develop and empirically study an enhanced Benders decomposition algorithm for solving multistage stochastic linear programs within a prespecified tolerance. The enhancements include warm start basis selection, preliminary cut generation, the multicut procedure, and decision tree traversing strategies. Computational results are presented for a collection of ``real-world`` multistage stochastic hydroelectric scheduling problems. Recently, there has been an increased focus on decomposition-based algorithms that use sampling within the optimization framework. These approaches hold much promise for solving stochastic programs with many scenarios. A critical component of such algorithms is a stopping criterion to ensure the quality of the solution. With this as motivation, we develop a stopping rule theory for algorithms in which bounds on the optimal objective function value are estimated by sampling. Rules are provided for selecting sample sizes and terminating the algorithm under which asymptotic validity of confidence interval statements for the quality of the proposed solution can be verified. Issues associated with the application of this theory to two sampling-based algorithms are considered, and preliminary empirical coverage results are presented.
Texture segmentation by genetic programming.
Song, Andy; Ciesielski, Vic
2008-01-01
This paper describes a texture segmentation method using genetic programming (GP), which is one of the most powerful evolutionary computation algorithms. By choosing an appropriate representation texture, classifiers can be evolved without computing texture features. Due to the absence of time-consuming feature extraction, the evolved classifiers enable the development of the proposed texture segmentation algorithm. This GP based method can achieve a segmentation speed that is significantly higher than that of conventional methods. This method does not require a human expert to manually construct models for texture feature extraction. In an analysis of the evolved classifiers, it can be seen that these GP classifiers are not arbitrary. Certain textural regularities are captured by these classifiers to discriminate different textures. GP has been shown in this study as a feasible and a powerful approach for texture classification and segmentation, which are generally considered as complex vision tasks.
2007-11-02
scarce resources ( Bazaraa vii). The modeling capabilities linear programming provides has made it a success in many fields of study. Since the...Planning and Programming of Facility Construction Projects. 12 May 1994. Bazaraa , Mokhtar S., John J Jarvis and Hanif D. Sherali. Linear Programming
Solving Maximal Clique Problem through Genetic Algorithm
NASA Astrophysics Data System (ADS)
Rajawat, Shalini; Hemrajani, Naveen; Menghani, Ekta
2010-11-01
Genetic algorithm is one of the most interesting heuristic search techniques. It depends basically on three operations; selection, crossover and mutation. The outcome of the three operations is a new population for the next generation. Repeating these operations until the termination condition is reached. All the operations in the algorithm are accessible with today's molecular biotechnology. The simulations show that with this new computing algorithm, it is possible to get a solution from a very small initial data pool, avoiding enumerating all candidate solutions. For randomly generated problems, genetic algorithm can give correct solution within a few cycles at high probability.
An improved genetic algorithm with dynamic topology
NASA Astrophysics Data System (ADS)
Cai, Kai-Quan; Tang, Yan-Wu; Zhang, Xue-Jun; Guan, Xiang-Min
2016-12-01
The genetic algorithm (GA) is a nature-inspired evolutionary algorithm to find optima in search space via the interaction of individuals. Recently, researchers demonstrated that the interaction topology plays an important role in information exchange among individuals of evolutionary algorithm. In this paper, we investigate the effect of different network topologies adopted to represent the interaction structures. It is found that GA with a high-density topology ends up more likely with an unsatisfactory solution, contrarily, a low-density topology can impede convergence. Consequently, we propose an improved GA with dynamic topology, named DT-GA, in which the topology structure varies dynamically along with the fitness evolution. Several experiments executed with 15 well-known test functions have illustrated that DT-GA outperforms other test GAs for making a balance of convergence speed and optimum quality. Our work may have implications in the combination of complex networks and computational intelligence. Project supported by the National Natural Science Foundation for Young Scientists of China (Grant No. 61401011), the National Key Technologies R & D Program of China (Grant No. 2015BAG15B01), and the National Natural Science Foundation of China (Grant No. U1533119).
Genetic algorithms at UC Davis/LLNL
Vemuri, V.R.
1993-12-31
A tutorial introduction to genetic algorithms is given. This brief tutorial should serve the purpose of introducing the subject to the novice. The tutorial is followed by a brief commentary on the term project reports that follow.
Genetic Algorithms, Floating Point Numbers and Applications
NASA Astrophysics Data System (ADS)
Hardy, Yorick; Steeb, Willi-Hans; Stoop, Ruedi
The core in most genetic algorithms is the bitwise manipulations of bit strings. We show that one can directly manipulate the bits in floating point numbers. This means the main bitwise operations in genetic algorithm mutations and crossings are directly done inside the floating point number. Thus the interval under consideration does not need to be known in advance. For applications, we consider the roots of polynomials and finding solutions of linear equations.
Programming the gradient projection algorithm
NASA Technical Reports Server (NTRS)
Hargrove, A.
1983-01-01
The gradient projection method of numerical optimization which is applied to problems having linear constraints but nonlinear objective functions is described and analyzed. The algorithm is found to be efficient and thorough for small systems, but requires the addition of auxiliary methods and programming for large scale systems with severe nonlinearities. In order to verify the theoretical results a digital computer is used to simulate the algorithm.
Genetic algorithms and the immune system
Forrest, S. . Dept. of Computer Science); Perelson, A.S. )
1990-01-01
Using genetic algorithm techniques we introduce a model to examine the hypothesis that antibody and T cell receptor genes evolved so as to encode the information needed to recognize schemas that characterize common pathogens. We have implemented the algorithm on the Connection Machine for 16,384 64-bit antigens and 512 64-bit antibodies. 8 refs.
Refined Genetic Algorithms for Polypeptide Structure Prediction.
1996-12-01
designing no v el proteins, in deco ding the information obtained from the Human Genome Pro ject (91), in designing new drugs, and in trying to...function that assigns tness v alues to p ossible solutions and an enco de/ deco de b et w een the algorithm and problem spaces. Al- though these metho ds...genetic algorithms: In tro duction and o v erview of curren t researc h. Parallel Genetic Algorithms, pages 5{35, 1993. 22. Bruce S. Duncan . P arallel ev
Genetic algorithms as global random search methods
NASA Technical Reports Server (NTRS)
Peck, Charles C.; Dhawan, Atam P.
1995-01-01
Genetic algorithm behavior is described in terms of the construction and evolution of the sampling distributions over the space of candidate solutions. This novel perspective is motivated by analysis indicating that the schema theory is inadequate for completely and properly explaining genetic algorithm behavior. Based on the proposed theory, it is argued that the similarities of candidate solutions should be exploited directly, rather than encoding candidate solutions and then exploiting their similarities. Proportional selection is characterized as a global search operator, and recombination is characterized as the search process that exploits similarities. Sequential algorithms and many deletion methods are also analyzed. It is shown that by properly constraining the search breadth of recombination operators, convergence of genetic algorithms to a global optimum can be ensured.
Genetic algorithms as global random search methods
NASA Technical Reports Server (NTRS)
Peck, Charles C.; Dhawan, Atam P.
1995-01-01
Genetic algorithm behavior is described in terms of the construction and evolution of the sampling distributions over the space of candidate solutions. This novel perspective is motivated by analysis indicating that that schema theory is inadequate for completely and properly explaining genetic algorithm behavior. Based on the proposed theory, it is argued that the similarities of candidate solutions should be exploited directly, rather than encoding candidate solution and then exploiting their similarities. Proportional selection is characterized as a global search operator, and recombination is characterized as the search process that exploits similarities. Sequential algorithms and many deletion methods are also analyzed. It is shown that by properly constraining the search breadth of recombination operators, convergence of genetic algorithms to a global optimum can be ensured.
A Parallel Genetic Algorithm for Automated Electronic Circuit Design
NASA Technical Reports Server (NTRS)
Lohn, Jason D.; Colombano, Silvano P.; Haith, Gary L.; Stassinopoulos, Dimitris; Norvig, Peter (Technical Monitor)
2000-01-01
We describe a parallel genetic algorithm (GA) that automatically generates circuit designs using evolutionary search. A circuit-construction programming language is introduced and we show how evolution can generate practical analog circuit designs. Our system allows circuit size (number of devices), circuit topology, and device values to be evolved. We present experimental results as applied to analog filter and amplifier design tasks.
Fault detection using genetic programming
NASA Astrophysics Data System (ADS)
Zhang, Liang; B. Jack, Lindsay; Nandi, Asoke K.
2005-03-01
Genetic programming (GP) is a stochastic process for automatically generating computer programs. GP has been applied to a variety of problems which are too wide to reasonably enumerate. As far as the authors are aware, it has rarely been used in condition monitoring (CM). In this paper, GP is used to detect faults in rotating machinery. Featuresets from two different machines are used to examine the performance of two-class normal/fault recognition. The results are compared with a few other methods for fault detection: Artificial neural networks (ANNs) have been used in this field for many years, while support vector machines (SVMs) also offer successful solutions. For ANNs and SVMs, genetic algorithms have been used to do feature selection, which is an inherent function of GP. In all cases, the GP demonstrates performance which equals or betters that of the previous best performing approaches on these data sets. The training times are also found to be considerably shorter than the other approaches, whilst the generated classification rules are easy to understand and independently validate.
Programming cells: towards an automated 'Genetic Compiler'.
Clancy, Kevin; Voigt, Christopher A
2010-08-01
One of the visions of synthetic biology is to be able to program cells using a language that is similar to that used to program computers or robotics. For large genetic programs, keeping track of the DNA on the level of nucleotides becomes tedious and error prone, requiring a new generation of computer-aided design (CAD) software. To push the size of projects, it is important to abstract the designer from the process of part selection and optimization. The vision is to specify genetic programs in a higher-level language, which a genetic compiler could automatically convert into a DNA sequence. Steps towards this goal include: defining the semantics of the higher-level language, algorithms to select and assemble parts, and biophysical methods to link DNA sequence to function. These will be coupled to graphic design interfaces and simulation packages to aid in the prediction of program dynamics, optimize genes, and scan projects for errors.
Combinatorial Multiobjective Optimization Using Genetic Algorithms
NASA Technical Reports Server (NTRS)
Crossley, William A.; Martin. Eric T.
2002-01-01
The research proposed in this document investigated multiobjective optimization approaches based upon the Genetic Algorithm (GA). Several versions of the GA have been adopted for multiobjective design, but, prior to this research, there had not been significant comparisons of the most popular strategies. The research effort first generalized the two-branch tournament genetic algorithm in to an N-branch genetic algorithm, then the N-branch GA was compared with a version of the popular Multi-Objective Genetic Algorithm (MOGA). Because the genetic algorithm is well suited to combinatorial (mixed discrete / continuous) optimization problems, the GA can be used in the conceptual phase of design to combine selection (discrete variable) and sizing (continuous variable) tasks. Using a multiobjective formulation for the design of a 50-passenger aircraft to meet the competing objectives of minimizing takeoff gross weight and minimizing trip time, the GA generated a range of tradeoff designs that illustrate which aircraft features change from a low-weight, slow trip-time aircraft design to a heavy-weight, short trip-time aircraft design. Given the objective formulation and analysis methods used, the results of this study identify where turboprop-powered aircraft and turbofan-powered aircraft become more desirable for the 50 seat passenger application. This aircraft design application also begins to suggest how a combinatorial multiobjective optimization technique could be used to assist in the design of morphing aircraft.
Research on Routing Selection Algorithm Based on Genetic Algorithm
NASA Astrophysics Data System (ADS)
Gao, Guohong; Zhang, Baojian; Li, Xueyong; Lv, Jinna
The hereditary algorithm is a kind of random searching and method of optimizing based on living beings natural selection and hereditary mechanism. In recent years, because of the potentiality in solving complicate problems and the successful application in the fields of industrial project, hereditary algorithm has been widely concerned by the domestic and international scholar. Routing Selection communication has been defined a standard communication model of IP version 6.This paper proposes a service model of Routing Selection communication, and designs and implements a new Routing Selection algorithm based on genetic algorithm.The experimental simulation results show that this algorithm can get more resolution at less time and more balanced network load, which enhances search ratio and the availability of network resource, and improves the quality of service.
An investigation of messy genetic algorithms
NASA Technical Reports Server (NTRS)
Goldberg, David E.; Deb, Kalyanmoy; Korb, Bradley
1990-01-01
Genetic algorithms (GAs) are search procedures based on the mechanics of natural selection and natural genetics. They combine the use of string codings or artificial chromosomes and populations with the selective and juxtapositional power of reproduction and recombination to motivate a surprisingly powerful search heuristic in many problems. Despite their empirical success, there has been a long standing objection to the use of GAs in arbitrarily difficult problems. A new approach was launched. Results to a 30-bit, order-three-deception problem were obtained using a new type of genetic algorithm called a messy genetic algorithm (mGAs). Messy genetic algorithms combine the use of variable-length strings, a two-phase selection scheme, and messy genetic operators to effect a solution to the fixed-coding problem of standard simple GAs. The results of the study of mGAs in problems with nonuniform subfunction scale and size are presented. The mGA approach is summarized, both its operation and the theory of its use. Experiments on problems of varying scale, varying building-block size, and combined varying scale and size are presented.
Robot path planning using a genetic algorithm
NASA Technical Reports Server (NTRS)
Cleghorn, Timothy F.; Baffes, Paul T.; Wang, Liu
1988-01-01
Robot path planning can refer either to a mobile vehicle such as a Mars Rover, or to an end effector on an arm moving through a cluttered workspace. In both instances there may exist many solutions, some of which are better than others, either in terms of distance traversed, energy expended, or joint angle or reach capabilities. A path planning program has been developed based upon a genetic algorithm. This program assumes global knowledge of the terrain or workspace, and provides a family of good paths between the initial and final points. Initially, a set of valid random paths are constructed. Successive generations of valid paths are obtained using one of several possible reproduction strategies similar to those found in biological communities. A fitness function is defined to describe the goodness of the path, in this case including length, slope, and obstacle avoidance considerations. It was found that with some reproduction strategies, the average value of the fitness function improved for successive generations, and that by saving the best paths of each generation, one could quite rapidly obtain a collection of good candidate solutions.
Genetic Algorithms for Digital Quantum Simulations.
Las Heras, U; Alvarez-Rodriguez, U; Solano, E; Sanz, M
2016-06-10
We propose genetic algorithms, which are robust optimization techniques inspired by natural selection, to enhance the versatility of digital quantum simulations. In this sense, we show that genetic algorithms can be employed to increase the fidelity and optimize the resource requirements of digital quantum simulation protocols while adapting naturally to the experimental constraints. Furthermore, this method allows us to reduce not only digital errors but also experimental errors in quantum gates. Indeed, by adding ancillary qubits, we design a modular gate made out of imperfect gates, whose fidelity is larger than the fidelity of any of the constituent gates. Finally, we prove that the proposed modular gates are resilient against different gate errors.
Applying a Genetic Algorithm to Reconfigurable Hardware
NASA Technical Reports Server (NTRS)
Wells, B. Earl; Weir, John; Trevino, Luis; Patrick, Clint; Steincamp, Jim
2004-01-01
This paper investigates the feasibility of applying genetic algorithms to solve optimization problems that are implemented entirely in reconfgurable hardware. The paper highlights the pe$ormance/design space trade-offs that must be understood to effectively implement a standard genetic algorithm within a modem Field Programmable Gate Array, FPGA, reconfgurable hardware environment and presents a case-study where this stochastic search technique is applied to standard test-case problems taken from the technical literature. In this research, the targeted FPGA-based platform and high-level design environment was the Starbridge Hypercomputing platform, which incorporates multiple Xilinx Virtex II FPGAs, and the Viva TM graphical hardware description language.
Equilibrium stellar systems with genetic algorithms
NASA Astrophysics Data System (ADS)
Gularte, E.; Carpintero, D. D.
In 1979, M Schwarzschild showed that it is possible to build an equilibrium triaxial stellar system. However, the linear programmation used to that goal was not able to determine the uniqueness of the solution, nor even if that solution was the optimum one. Genetic algorithms are ideal tools to find a solution to this problem. In this work, we use a genetic algorithm to reproduce an equilibrium spherical stellar system from a suitable set of predefined orbits, obtaining the best solution attainable with the provided set. FULL TEXT IN SPANISH
The Applications of Genetic Algorithms in Medicine.
Ghaheri, Ali; Shoar, Saeed; Naderan, Mohammad; Hoseini, Sayed Shahabuddin
2015-11-01
A great wealth of information is hidden amid medical research data that in some cases cannot be easily analyzed, if at all, using classical statistical methods. Inspired by nature, metaheuristic algorithms have been developed to offer optimal or near-optimal solutions to complex data analysis and decision-making tasks in a reasonable time. Due to their powerful features, metaheuristic algorithms have frequently been used in other fields of sciences. In medicine, however, the use of these algorithms are not known by physicians who may well benefit by applying them to solve complex medical problems. Therefore, in this paper, we introduce the genetic algorithm and its applications in medicine. The use of the genetic algorithm has promising implications in various medical specialties including radiology, radiotherapy, oncology, pediatrics, cardiology, endocrinology, surgery, obstetrics and gynecology, pulmonology, infectious diseases, orthopedics, rehabilitation medicine, neurology, pharmacotherapy, and health care management. This review introduces the applications of the genetic algorithm in disease screening, diagnosis, treatment planning, pharmacovigilance, prognosis, and health care management, and enables physicians to envision possible applications of this metaheuristic method in their medical career.].
The Applications of Genetic Algorithms in Medicine
Ghaheri, Ali; Shoar, Saeed; Naderan, Mohammad; Hoseini, Sayed Shahabuddin
2015-01-01
A great wealth of information is hidden amid medical research data that in some cases cannot be easily analyzed, if at all, using classical statistical methods. Inspired by nature, metaheuristic algorithms have been developed to offer optimal or near-optimal solutions to complex data analysis and decision-making tasks in a reasonable time. Due to their powerful features, metaheuristic algorithms have frequently been used in other fields of sciences. In medicine, however, the use of these algorithms are not known by physicians who may well benefit by applying them to solve complex medical problems. Therefore, in this paper, we introduce the genetic algorithm and its applications in medicine. The use of the genetic algorithm has promising implications in various medical specialties including radiology, radiotherapy, oncology, pediatrics, cardiology, endocrinology, surgery, obstetrics and gynecology, pulmonology, infectious diseases, orthopedics, rehabilitation medicine, neurology, pharmacotherapy, and health care management. This review introduces the applications of the genetic algorithm in disease screening, diagnosis, treatment planning, pharmacovigilance, prognosis, and health care management, and enables physicians to envision possible applications of this metaheuristic method in their medical career.] PMID:26676060
The design and implementation of MPI master-slave parallel genetic algorithm
NASA Astrophysics Data System (ADS)
Liu, Shuping; Cheng, Yanliu
2013-03-01
In this paper, the MPI master-slave parallel genetic algorithm is implemented by analyzing the basic genetic algorithm and parallel MPI program, and building a Linux cluster. This algorithm is used for the test of maximum value problems (Rosen brocks function) .And we acquire the factors influencing the master-slave parallel genetic algorithm by deriving from the analysis of test data. The experimental data shows that the balanced hardware configuration and software design optimization can improve the performance of system in the complexity of the computing environment using the master-slave parallel genetic algorithms.
Multiobjective Genetic Algorithm applied to dengue control.
Florentino, Helenice O; Cantane, Daniela R; Santos, Fernando L P; Bannwart, Bettina F
2014-12-01
Dengue fever is an infectious disease caused by a virus of the Flaviridae family and transmitted to the person by a mosquito of the genus Aedes aegypti. This disease has been a global public health problem because a single mosquito can infect up to 300 people and between 50 and 100 million people are infected annually on all continents. Thus, dengue fever is currently a subject of research, whether in the search for vaccines and treatments for the disease or efficient and economical forms of mosquito control. The current study aims to study techniques of multiobjective optimization to assist in solving problems involving the control of the mosquito that transmits dengue fever. The population dynamics of the mosquito is studied in order to understand the epidemic phenomenon and suggest strategies of multiobjective programming for mosquito control. A Multiobjective Genetic Algorithm (MGA_DENGUE) is proposed to solve the optimization model treated here and we discuss the computational results obtained from the application of this technique.
Convergence properties of simple genetic algorithms
NASA Technical Reports Server (NTRS)
Bethke, A. D.; Zeigler, B. P.; Strauss, D. M.
1974-01-01
The essential parameters determining the behaviour of genetic algorithms were investigated. Computer runs were made while systematically varying the parameter values. Results based on the progress curves obtained from these runs are presented along with results based on the variability of the population as the run progresses.
Predicting complex mineral structures using genetic algorithms.
Mohn, Chris E; Kob, Walter
2015-10-28
We show that symmetry-adapted genetic algorithms are capable of finding the ground state of a range of complex crystalline phases including layered- and incommensurate super-structures. This opens the way for the atomistic prediction of complex crystal structures of functional materials and mineral phases.
MULTIOBJECTIVE PARALLEL GENETIC ALGORITHM FOR WASTE MINIMIZATION
In this research we have developed an efficient multiobjective parallel genetic algorithm (MOPGA) for waste minimization problems. This MOPGA integrates PGAPack (Levine, 1996) and NSGA-II (Deb, 2000) with novel modifications. PGAPack is a master-slave parallel implementation of a...
Genetic Algorithms for Multiple-Choice Problems
NASA Astrophysics Data System (ADS)
Aickelin, Uwe
2010-04-01
This thesis investigates the use of problem-specific knowledge to enhance a genetic algorithm approach to multiple-choice optimisation problems.It shows that such information can significantly enhance performance, but that the choice of information and the way it is included are important factors for success.Two multiple-choice problems are considered.The first is constructing a feasible nurse roster that considers as many requests as possible.In the second problem, shops are allocated to locations in a mall subject to constraints and maximising the overall income.Genetic algorithms are chosen for their well-known robustness and ability to solve large and complex discrete optimisation problems.However, a survey of the literature reveals room for further research into generic ways to include constraints into a genetic algorithm framework.Hence, the main theme of this work is to balance feasibility and cost of solutions.In particular, co-operative co-evolution with hierarchical sub-populations, problem structure exploiting repair schemes and indirect genetic algorithms with self-adjusting decoder functions are identified as promising approaches.The research starts by applying standard genetic algorithms to the problems and explaining the failure of such approaches due to epistasis.To overcome this, problem-specific information is added in a variety of ways, some of which are designed to increase the number of feasible solutions found whilst others are intended to improve the quality of such solutions.As well as a theoretical discussion as to the underlying reasons for using each operator,extensive computational experiments are carried out on a variety of data.These show that the indirect approach relies less on problem structure and hence is easier to implement and superior in solution quality.
Genetic algorithms for the vehicle routing problem
NASA Astrophysics Data System (ADS)
Volna, Eva
2016-06-01
The Vehicle Routing Problem (VRP) is one of the most challenging combinatorial optimization tasks. This problem consists in designing the optimal set of routes for fleet of vehicles in order to serve a given set of customers. Evolutionary algorithms are general iterative algorithms for combinatorial optimization. These algorithms have been found to be very effective and robust in solving numerous problems from a wide range of application domains. This problem is known to be NP-hard; hence many heuristic procedures for its solution have been suggested. For such problems it is often desirable to obtain approximate solutions, so they can be found fast enough and are sufficiently accurate for the purpose. In this paper we have performed an experimental study that indicates the suitable use of genetic algorithms for the vehicle routing problem.
Enhanced algorithms for stochastic programming
Krishna, A.S.
1993-09-01
In this dissertation, we present some of the recent advances made in solving two-stage stochastic linear programming problems of large size and complexity. Decomposition and sampling are two fundamental components of techniques to solve stochastic optimization problems. We describe improvements to the current techniques in both these areas. We studied different ways of using importance sampling techniques in the context of Stochastic programming, by varying the choice of approximation functions used in this method. We have concluded that approximating the recourse function by a computationally inexpensive piecewise-linear function is highly efficient. This reduced the problem from finding the mean of a computationally expensive functions to finding that of a computationally inexpensive function. Then we implemented various variance reduction techniques to estimate the mean of a piecewise-linear function. This method achieved similar variance reductions in orders of magnitude less time than, when we directly applied variance-reduction techniques directly on the given problem. In solving a stochastic linear program, the expected value problem is usually solved before a stochastic solution and also to speed-up the algorithm by making use of the information obtained from the solution of the expected value problem. We have devised a new decomposition scheme to improve the convergence of this algorithm.
Applications of Genetic Programming in Cancer Research
Worzel, William P.; Yu, Jianjun; Almal, Arpit A.; Chinnaiyan, Arul M.
2012-01-01
The theory of Darwinian evolution is the fundamental keystones of modern biology. Late in the last century, computer scientists began adapting its principles, in particular natural selection, to complex computational challenges, leading to the emergence of evolutionary algorithms. The conceptual model of selective pressure and recombination in evolutionary algorithms allows scientists to efficiently search high dimensional space for solutions to complex problems. In the last decade, genetic programming has been developed and extensively applied for analysis of molecular data to classify cancer subtypes and characterize the mechanisms of cancer pathogenesis and development. This article reviews current successes using genetic programming and discusses its potential impact in cancer research and treatment in the near future. PMID:18929677
Applications of genetic programming in cancer research.
Worzel, William P; Yu, Jianjun; Almal, Arpit A; Chinnaiyan, Arul M
2009-02-01
The theory of Darwinian evolution is the fundamental keystones of modern biology. Late in the last century, computer scientists began adapting its principles, in particular natural selection, to complex computational challenges, leading to the emergence of evolutionary algorithms. The conceptual model of selective pressure and recombination in evolutionary algorithms allow scientists to efficiently search high dimensional space for solutions to complex problems. In the last decade, genetic programming has been developed and extensively applied for analysis of molecular data to classify cancer subtypes and characterize the mechanisms of cancer pathogenesis and development. This article reviews current successes using genetic programming and discusses its potential impact in cancer research and treatment in the near future.
National Dairy Genetic Evaluation Program
Technology Transfer Automated Retrieval System (TEKTRAN)
The National Dairy Genetic Evaluation Program is a continuation of ongoing USDA collaboration with the U.S. dairy industry on genetic evaluation of dairy cattle since 1908. Data are provided by dairy records processing centers (yield, health, pedigree, and reproduction traits), breed registry societ...
Predicting mining activity with parallel genetic algorithms
Talaie, S.; Leigh, R.; Louis, S.J.; Raines, G.L.; Beyer, H.G.; O'Reilly, U.M.; Banzhaf, Arnold D.; Blum, W.; Bonabeau, C.; Cantu-Paz, E.W.; ,; ,
2005-01-01
We explore several different techniques in our quest to improve the overall model performance of a genetic algorithm calibrated probabilistic cellular automata. We use the Kappa statistic to measure correlation between ground truth data and data predicted by the model. Within the genetic algorithm, we introduce a new evaluation function sensitive to spatial correctness and we explore the idea of evolving different rule parameters for different subregions of the land. We reduce the time required to run a simulation from 6 hours to 10 minutes by parallelizing the code and employing a 10-node cluster. Our empirical results suggest that using the spatially sensitive evaluation function does indeed improve the performance of the model and our preliminary results also show that evolving different rule parameters for different regions tends to improve overall model performance. Copyright 2005 ACM.
Fashion sketch design by interactive genetic algorithms
NASA Astrophysics Data System (ADS)
Mok, P. Y.; Wang, X. X.; Xu, J.; Kwok, Y. L.
2012-11-01
Computer aided design is vitally important for the modern industry, particularly for the creative industry. Fashion industry faced intensive challenges to shorten the product development process. In this paper, a methodology is proposed for sketch design based on interactive genetic algorithms. The sketch design system consists of a sketch design model, a database and a multi-stage sketch design engine. First, a sketch design model is developed based on the knowledge of fashion design to describe fashion product characteristics by using parameters. Second, a database is built based on the proposed sketch design model to define general style elements. Third, a multi-stage sketch design engine is used to construct the design. Moreover, an interactive genetic algorithm (IGA) is used to accelerate the sketch design process. The experimental results have demonstrated that the proposed method is effective in helping laypersons achieve satisfied fashion design sketches.
Genetic algorithms for minimal source reconstructions
Lewis, P.S.; Mosher, J.C.
1993-12-01
Under-determined linear inverse problems arise in applications in which signals must be estimated from insufficient data. In these problems the number of potentially active sources is greater than the number of observations. In many situations, it is desirable to find a minimal source solution. This can be accomplished by minimizing a cost function that accounts from both the compatibility of the solution with the observations and for its ``sparseness``. Minimizing functions of this form can be a difficult optimization problem. Genetic algorithms are a relatively new and robust approach to the solution of difficult optimization problems, providing a global framework that is not dependent on local continuity or on explicit starting values. In this paper, the authors describe the use of genetic algorithms to find minimal source solutions, using as an example a simulation inspired by the reconstruction of neural currents in the human brain from magnetoencephalographic (MEG) measurements.
Medical image segmentation using genetic algorithms.
Maulik, Ujjwal
2009-03-01
Genetic algorithms (GAs) have been found to be effective in the domain of medical image segmentation, since the problem can often be mapped to one of search in a complex and multimodal landscape. The challenges in medical image segmentation arise due to poor image contrast and artifacts that result in missing or diffuse organ/tissue boundaries. The resulting search space is therefore often noisy with a multitude of local optima. Not only does the genetic algorithmic framework prove to be effective in coming out of local optima, it also brings considerable flexibility into the segmentation procedure. In this paper, an attempt has been made to review the major applications of GAs to the domain of medical image segmentation.
Application of Genetic Algorithms in Seismic Tomography
NASA Astrophysics Data System (ADS)
Soupios, Pantelis; Akca, Irfan; Mpogiatzis, Petros; Basokur, Ahmet; Papazachos, Constantinos
2010-05-01
In the earth sciences several inverse problems that require data fitting and parameter estimation are nonlinear and can involve a large number of unknown parameters. Consequently, the application of analytical inversion or optimization techniques may be quite restrictive. In practice, most analytical methods are local in nature and rely on a linearized form of the problem in question, adopting an iterative procedure using partial derivatives to improve an initial model. This approach can lead to a dependence of the final model solution on the starting model and is prone to entrapment in local misfit minima. Moreover, the calculation of derivatives can be computationally inefficient and create instabilities when numerical approximations are used. In contrast to these local minimization methods, global techniques that do not rely on partial derivatives, are independent of the form of the data misfit criterion, and are computationally robust. Such methods often use random processes to sample a selected wider span of the model space. In this situation, randomly generated models are assessed in terms of their data-fitting quality and the process may be stopped after a certain number of acceptable models is identified or continued until a satisfactory data fit is achieved. A new class of methods known as genetic algorithms achieves the aforementioned approximation through novel model representation and manipulations. Genetic algorithms (GAs) were originally developed in the field of artificial intelligence by John Holland more than 20 years ago, but even in this field it is less than a decade that the methodology has been more generally applied and only recently did the methodology attract the attention of the earth sciences community. Applications have been generally concentrated in geophysics and in particular seismology. As awareness of genetic algorithms grows there surely will be many more and varied applications to earth science problems. In the present work, the
Economic Dispatch Using Genetic Algorithm Based Hybrid Approach
Tahir Nadeem Malik; Aftab Ahmad; Shahab Khushnood
2006-07-01
Power Economic Dispatch (ED) is vital and essential daily optimization procedure in the system operation. Present day large power generating units with multi-valves steam turbines exhibit a large variation in the input-output characteristic functions, thus non-convexity appears in the characteristic curves. Various mathematical and optimization techniques have been developed, applied to solve economic dispatch (ED) problem. Most of these are calculus-based optimization algorithms that are based on successive linearization and use the first and second order differentiations of objective function and its constraint equations as the search direction. They usually require heat input, power output characteristics of generators to be of monotonically increasing nature or of piecewise linearity. These simplifying assumptions result in an inaccurate dispatch. Genetic algorithms have used to solve the economic dispatch problem independently and in conjunction with other AI tools and mathematical programming approaches. Genetic algorithms have inherent ability to reach the global minimum region of search space in a short time, but then take longer time to converge the solution. GA based hybrid approaches get around this problem and produce encouraging results. This paper presents brief survey on hybrid approaches for economic dispatch, an architecture of extensible computational framework as common environment for conventional, genetic algorithm and hybrid approaches based solution for power economic dispatch, the implementation of three algorithms in the developed framework. The framework tested on standard test systems for its performance evaluation. (authors)
A hybrid genetic algorithm for resolving closely spaced objects
NASA Technical Reports Server (NTRS)
Abbott, R. J.; Lillo, W. E.; Schulenburg, N.
1995-01-01
A hybrid genetic algorithm is described for performing the difficult optimization task of resolving closely spaced objects appearing in space based and ground based surveillance data. This application of genetic algorithms is unusual in that it uses a powerful domain-specific operation as a genetic operator. Results of applying the algorithm to real data from telescopic observations of a star field are presented.
Genetic Network Programming with Reconstructed Individuals
NASA Astrophysics Data System (ADS)
Ye, Fengming; Mabu, Shingo; Wang, Lutao; Eto, Shinji; Hirasawa, Kotaro
A lot of research on evolutionary computation has been done and some significant classical methods such as Genetic Algorithm (GA), Genetic Programming (GP), Evolutionary Programming (EP), and Evolution Strategies (ES) have been studied. Recently, a new approach named Genetic Network Programming (GNP) has been proposed. GNP can evolve itself and find the optimal solution. It is based on the idea of Genetic Algorithm and uses the data structure of directed graphs. Many papers have demonstrated that GNP can deal with complex problems in the dynamic environments very efficiently and effectively. As a result, recently, GNP is getting more and more attentions and is used in many different areas such as data mining, extracting trading rules of stock markets, elevator supervised control systems, etc., and GNP has obtained some outstanding results. Focusing on the GNP's distinguished expression ability of the graph structure, this paper proposes a method named Genetic Network Programming with Reconstructed Individuals (GNP-RI). The aim of GNP-RI is to balance the exploitation and exploration of GNP, that is, to strengthen the exploitation ability by using the exploited information extensively during the evolution process of GNP and finally obtain better performances than that of GNP. In the proposed method, the worse individuals are reconstructed and enhanced by the elite information before undergoing genetic operations (mutation and crossover). The enhancement of worse individuals mimics the maturing phenomenon in nature, where bad individuals can become smarter after receiving a good education. In this paper, GNP-RI is applied to the tile-world problem which is an excellent bench mark for evaluating the proposed architecture. The performance of GNP-RI is compared with that of the conventional GNP. The simulation results show some advantages of GNP-RI demonstrating its superiority over the conventional GNPs.
Genetic Algorithm Tuned Fuzzy Logic for Gliding Return Trajectories
NASA Technical Reports Server (NTRS)
Burchett, Bradley T.
2003-01-01
The problem of designing and flying a trajectory for successful recovery of a reusable launch vehicle is tackled using fuzzy logic control with genetic algorithm optimization. The plant is approximated by a simplified three degree of freedom non-linear model. A baseline trajectory design and guidance algorithm consisting of several Mamdani type fuzzy controllers is tuned using a simple genetic algorithm. Preliminary results show that the performance of the overall system is shown to improve with genetic algorithm tuning.
Comparison of genetic algorithms with conjugate gradient methods
NASA Technical Reports Server (NTRS)
Bosworth, J. L.; Foo, N. Y.; Zeigler, B. P.
1972-01-01
Genetic algorithms for mathematical function optimization are modeled on search strategies employed in natural adaptation. Comparisons of genetic algorithms with conjugate gradient methods, which were made on an IBM 1800 digital computer, show that genetic algorithms display superior performance over gradient methods for functions which are poorly behaved mathematically, for multimodal functions, and for functions obscured by additive random noise. Genetic methods offer performance comparable to gradient methods for many of the standard functions.
Genetic Algorithms for solving SVM-ICA
NASA Astrophysics Data System (ADS)
Górriz, J. M.; Puntonet, C. G.
2004-11-01
In this paper we solve the well known ill-posed problem called Independent Component Analysis using the Support Vector Machines (SVM) methodology and proposing a genetic algorithm to minimize a nonconvex and nonlinear cost function based on statistical estimators. In this way a novel method for blindly separating unobservable independent component signals from their linear and non linear (using mapping functions) mixtures is devised. The GA presented in this work is able to extract independent components with faster rate than the previous independent component analysis algorithms based on Higher Order Statistics (HOS) as input space dimension increases showing significant accuracy and robustness. Using a suitable mathematically notation we derive independent functions equivalent to the Maximum Entropy principle.
Dominant takeover regimes for genetic algorithms
NASA Technical Reports Server (NTRS)
Noever, David; Baskaran, Subbiah
1995-01-01
The genetic algorithm (GA) is a machine-based optimization routine which connects evolutionary learning to natural genetic laws. The present work addresses the problem of obtaining the dominant takeover regimes in the GA dynamics. Estimated GA run times are computed for slow and fast convergence in the limits of high and low fitness ratios. Using Euler's device for obtaining partial sums in closed forms, the result relaxes the previously held requirements for long time limits. Analytical solution reveal that appropriately accelerated regimes can mark the ascendancy of the most fit solution. In virtually all cases, the weak (logarithmic) dependence of convergence time on problem size demonstrates the potential for the GA to solve large N-P complete problems.
Genetic algorithms for modelling and optimisation
NASA Astrophysics Data System (ADS)
McCall, John
2005-12-01
Genetic algorithms (GAs) are a heuristic search and optimisation technique inspired by natural evolution. They have been successfully applied to a wide range of real-world problems of significant complexity. This paper is intended as an introduction to GAs aimed at immunologists and mathematicians interested in immunology. We describe how to construct a GA and the main strands of GA theory before speculatively identifying possible applications of GAs to the study of immunology. An illustrative example of using a GA for a medical optimal control problem is provided. The paper also includes a brief account of the related area of artificial immune systems.
Parallel Genetic Algorithm for Alpha Spectra Fitting
NASA Astrophysics Data System (ADS)
García-Orellana, Carlos J.; Rubio-Montero, Pilar; González-Velasco, Horacio
2005-01-01
We present a performance study of alpha-particle spectra fitting using parallel Genetic Algorithm (GA). The method uses a two-step approach. In the first step we run parallel GA to find an initial solution for the second step, in which we use Levenberg-Marquardt (LM) method for a precise final fit. GA is a high resources-demanding method, so we use a Beowulf cluster for parallel simulation. The relationship between simulation time (and parallel efficiency) and processors number is studied using several alpha spectra, with the aim of obtaining a method to estimate the optimal processors number that must be used in a simulation.
Instrument design and optimization using genetic algorithms
Hoelzel, Robert; Bentley, Phillip M.; Fouquet, Peter
2006-10-15
This article describes the design of highly complex physical instruments by using a canonical genetic algorithm (GA). The procedure can be applied to all instrument designs where performance goals can be quantified. It is particularly suited to the optimization of instrument design where local optima in the performance figure of merit are prevalent. Here, a GA is used to evolve the design of the neutron spin-echo spectrometer WASP which is presently being constructed at the Institut Laue-Langevin, Grenoble, France. A comparison is made between this artificial intelligence approach and the traditional manual design methods. We demonstrate that the search of parameter space is more efficient when applying the genetic algorithm, and the GA produces a significantly better instrument design. Furthermore, it is found that the GA increases flexibility, by facilitating the reoptimization of the design after changes in boundary conditions during the design phase. The GA also allows the exploration of 'nonstandard' magnet coil geometries. We conclude that this technique constitutes a powerful complementary tool for the design and optimization of complex scientific apparatus, without replacing the careful thought processes employed in traditional design methods.
MM Algorithms for Geometric and Signomial Programming.
Lange, Kenneth; Zhou, Hua
2014-02-01
This paper derives new algorithms for signomial programming, a generalization of geometric programming. The algorithms are based on a generic principle for optimization called the MM algorithm. In this setting, one can apply the geometric-arithmetic mean inequality and a supporting hyperplane inequality to create a surrogate function with parameters separated. Thus, unconstrained signomial programming reduces to a sequence of one-dimensional minimization problems. Simple examples demonstrate that the MM algorithm derived can converge to a boundary point or to one point of a continuum of minimum points. Conditions under which the minimum point is unique or occurs in the interior of parameter space are proved for geometric programming. Convergence to an interior point occurs at a linear rate. Finally, the MM framework easily accommodates equality and inequality constraints of signomial type. For the most important special case, constrained quadratic programming, the MM algorithm involves very simple updates.
Optimisation of nonlinear motion cueing algorithm based on genetic algorithm
NASA Astrophysics Data System (ADS)
Asadi, Houshyar; Mohamed, Shady; Rahim Zadeh, Delpak; Nahavandi, Saeid
2015-04-01
Motion cueing algorithms (MCAs) are playing a significant role in driving simulators, aiming to deliver the most accurate human sensation to the simulator drivers compared with a real vehicle driver, without exceeding the physical limitations of the simulator. This paper provides the optimisation design of an MCA for a vehicle simulator, in order to find the most suitable washout algorithm parameters, while respecting all motion platform physical limitations, and minimising human perception error between real and simulator driver. One of the main limitations of the classical washout filters is that it is attuned by the worst-case scenario tuning method. This is based on trial and error, and is effected by driving and programmers experience, making this the most significant obstacle to full motion platform utilisation. This leads to inflexibility of the structure, production of false cues and makes the resulting simulator fail to suit all circumstances. In addition, the classical method does not take minimisation of human perception error and physical constraints into account. Production of motion cues and the impact of different parameters of classical washout filters on motion cues remain inaccessible for designers for this reason. The aim of this paper is to provide an optimisation method for tuning the MCA parameters, based on nonlinear filtering and genetic algorithms. This is done by taking vestibular sensation error into account between real and simulated cases, as well as main dynamic limitations, tilt coordination and correlation coefficient. Three additional compensatory linear blocks are integrated into the MCA, to be tuned in order to modify the performance of the filters successfully. The proposed optimised MCA is implemented in MATLAB/Simulink software packages. The results generated using the proposed method show increased performance in terms of human sensation, reference shape tracking and exploiting the platform more efficiently without reaching
Multiple source localization using genetic algorithms.
McNay, D; Michielssen, E; Rogers, R L; Taylor, S A; Akhtari, M; Sutherling, W W
1996-02-01
We present a new procedure for localizing simultaneously active multiple brain sources that overlap in both space and time on EEG recordings. The source localization technique was based on a spatio-temporal model and a genetic algorithm search routine. The method was successfully applied to the localization of two dipole sources from several sets of simulated potentials with various signal-to-noise ratios (SNR). The different SNR values resembled evoked responses and epileptic spikes as commonly seen in the laboratory. Results of the simulation studies yielded localization accuracy ranging from 0.01 to 0.07 cm with an SNR of 10; from 0.02 to 0.26 cm with an SNR of 5; and from 0.06 to 0.73 cm when the SNR was equal to 2. Additionally, two sets of simulations were based on the dipole arrangements and time activities of data obtained during electrical stimulation of the median nerve in human subjects. These studies yielded localization accuracy within 0.1 cm. We also studied the localization accuracy of the algorithm using a physical model incorporating potential measurements of two current dipoles embedded in a sphere. In this situation the algorithm was successful in localizing the two simultaneously active sources to within 0.07-0.15 cm.
A genetic algorithm to reduce stream channel cross section data
Berenbrock, C.
2006-01-01
A genetic algorithm (GA) was used to reduce cross section data for a hypothetical example consisting of 41 data points and for 10 cross sections on the Kootenai River. The number of data points for the Kootenai River cross sections ranged from about 500 to more than 2,500. The GA was applied to reduce the number of data points to a manageable dataset because most models and other software require fewer than 100 data points for management, manipulation, and analysis. Results indicated that the program successfully reduced the data. Fitness values from the genetic algorithm were lower (better) than those in a previous study that used standard procedures of reducing the cross section data. On average, fitnesses were 29 percent lower, and several were about 50 percent lower. Results also showed that cross sections produced by the genetic algorithm were representative of the original section and that near-optimal results could be obtained in a single run, even for large problems. Other data also can be reduced in a method similar to that for cross section data.
Training product unit neural networks with genetic algorithms
NASA Technical Reports Server (NTRS)
Janson, D. J.; Frenzel, J. F.; Thelen, D. C.
1991-01-01
The training of product neural networks using genetic algorithms is discussed. Two unusual neural network techniques are combined; product units are employed instead of the traditional summing units and genetic algorithms train the network rather than backpropagation. As an example, a neural netork is trained to calculate the optimum width of transistors in a CMOS switch. It is shown how local minima affect the performance of a genetic algorithm, and one method of overcoming this is presented.
Restoration of degraded images using genetic programming
NASA Astrophysics Data System (ADS)
Hernández-Beltrán, José Enrique; Díaz-Ramírez, Víctor H.; Trujillo, Leonardo; Legrand, Pierrick
2016-09-01
In image restoration problems it is commonly assumed that image degradations are linear. In real-life this assumption is not always satisfied causing linear restoration methods fail. In this work, we present the design of an image restoration filtering based on genetic programming. The proposed filtering is given by a secuence of basic mathematical operators that allows to retrieve an undegraded image from an image degraded with noise. Computer simulations results obtained with the proposed algorithm in terms of objective metrics are analyzed and discussed by processing images degraded with noise. The obtained results are compared with those obtained with existing linear filters.
Multidisciplinary design optimization using genetic algorithms
NASA Technical Reports Server (NTRS)
Unal, Resit
1994-01-01
Multidisciplinary design optimization (MDO) is an important step in the conceptual design and evaluation of launch vehicles since it can have a significant impact on performance and life cycle cost. The objective is to search the system design space to determine values of design variables that optimize the performance characteristic subject to system constraints. Gradient-based optimization routines have been used extensively for aerospace design optimization. However, one limitation of gradient based optimizers is their need for gradient information. Therefore, design problems which include discrete variables can not be studied. Such problems are common in launch vehicle design. For example, the number of engines and material choices must be integer values or assume only a few discrete values. In this study, genetic algorithms are investigated as an approach to MDO problems involving discrete variables and discontinuous domains. Optimization by genetic algorithms (GA) uses a search procedure which is fundamentally different from those gradient based methods. Genetic algorithms seek to find good solutions in an efficient and timely manner rather than finding the best solution. GA are designed to mimic evolutionary selection. A population of candidate designs is evaluated at each iteration, and each individual's probability of reproduction (existence in the next generation) depends on its fitness value (related to the value of the objective function). Progress toward the optimum is achieved by the crossover and mutation operations. GA is attractive since it uses only objective function values in the search process, so gradient calculations are avoided. Hence, GA are able to deal with discrete variables. Studies report success in the use of GA for aircraft design optimization studies, trajectory analysis, space structure design and control systems design. In these studies reliable convergence was achieved, but the number of function evaluations was large compared
Optimized dynamical decoupling via genetic algorithms
NASA Astrophysics Data System (ADS)
Quiroz, Gregory; Lidar, Daniel A.
2013-11-01
We utilize genetic algorithms aided by simulated annealing to find optimal dynamical decoupling (DD) sequences for a single-qubit system subjected to a general decoherence model under a variety of control pulse conditions. We focus on the case of sequences with equal pulse intervals and perform the optimization with respect to pulse type and order. In this manner, we obtain robust DD sequences, first in the limit of ideal pulses, then when including pulse imperfections such as finite-pulse duration and qubit rotation (flip-angle) errors. Although our optimization is numerical, we identify a deterministic structure that underlies the top-performing sequences. We use this structure to devise DD sequences which outperform previously designed concatenated DD (CDD) and quadratic DD (QDD) sequences in the presence of pulse errors. We explain our findings using time-dependent perturbation theory and provide a detailed scaling analysis of the optimal sequences.
Genetic Algorithm Approaches to Prebiobiotic Chemistry Modeling
NASA Technical Reports Server (NTRS)
Lohn, Jason; Colombano, Silvano
1997-01-01
We model an artificial chemistry comprised of interacting polymers by specifying two initial conditions: a distribution of polymers and a fixed set of reversible catalytic reactions. A genetic algorithm is used to find a set of reactions that exhibit a desired dynamical behavior. Such a technique is useful because it allows an investigator to determine whether a specific pattern of dynamics can be produced, and if it can, the reaction network found can be then analyzed. We present our results in the context of studying simplified chemical dynamics in theorized protocells - hypothesized precursors of the first living organisms. Our results show that given a small sample of plausible protocell reaction dynamics, catalytic reaction sets can be found. We present cases where this is not possible and also analyze the evolved reaction sets.
PDE Nozzle Optimization Using a Genetic Algorithm
NASA Technical Reports Server (NTRS)
Billings, Dana; Turner, James E. (Technical Monitor)
2000-01-01
Genetic algorithms, which simulate evolution in natural systems, have been used to find solutions to optimization problems that seem intractable to standard approaches. In this study, the feasibility of using a GA to find an optimum, fixed profile nozzle for a pulse detonation engine (PDE) is demonstrated. The objective was to maximize impulse during the detonation wave passage and blow-down phases of operation. Impulse of each profile variant was obtained by using the CFD code Mozart/2.0 to simulate the transient flow. After 7 generations, the method has identified a nozzle profile that certainly is a candidate for optimum solution. The constraints on the generality of this possible solution remain to be clarified.
Band-structure parameters by genetic algorithm
Starrost, F.; Bornholdt, S.; Solterbeck, C.; Schattke, W.
1996-05-01
A genetic algorithm has been used to solve a complex multidimensional parameter-fitting problem. We will focus on the parameters of an empirical tight-binding Hamiltonian. The method is used to approximate the electronic energy band structure if energy values are known for a few wave vectors of high symmetry. Compared to the usual manual procedure this method is more accurate and automatic. This approach, based on the extended H{umlt u}ckel theory (EHT), has provided a list of EHT parameters for IV-IV and III-V semiconductors with zinc-blende structure and helped us to find a symmetry in the EHT. {copyright} {ital 1996 The American Physical Society.}
Improving Search Properties in Genetic Programming
NASA Technical Reports Server (NTRS)
Janikow, Cezary Z.; DeWeese, Scott
1997-01-01
With the advancing computer processing capabilities, practical computer applications are mostly limited by the amount of human programming required to accomplish a specific task. This necessary human participation creates many problems, such as dramatically increased cost. To alleviate the problem, computers must become more autonomous. In other words, computers must be capable to program/reprogram themselves to adapt to changing environments/tasks/demands/domains. Evolutionary computation offers potential means, but it must be advanced beyond its current practical limitations. Evolutionary algorithms model nature. They maintain a population of structures representing potential solutions to the problem at hand. These structures undergo a simulated evolution by means of mutation, crossover, and a Darwinian selective pressure. Genetic programming (GP) is the most promising example of an evolutionary algorithm. In GP, the structures that evolve are trees, which is a dramatic departure from previously used representations such as strings in genetic algorithms. The space of potential trees is defined by means of their elements: functions, which label internal nodes, and terminals, which label leaves. By attaching semantic interpretation to those elements, trees can be interpreted as computer programs (given an interpreter), evolved architectures, etc. JSC has begun exploring GP as a potential tool for its long-term project on evolving dextrous robotic capabilities. Last year we identified representation redundancies as the primary source of inefficiency in GP. Subsequently, we proposed a method to use problem constraints to reduce those redundancies, effectively reducing GP complexity. This method was implemented afterwards at the University of Missouri. This summer, we have evaluated the payoff from using problem constraints to reduce search complexity on two classes of problems: learning boolean functions and solving the forward kinematics problem. We have also
GAMPMS: Genetic algorithm managed peptide mutant screening.
Long, Thomas; McDougal, Owen M; Andersen, Tim
2015-06-30
The prominence of endogenous peptide ligands targeted to receptors makes peptides with the desired binding activity good molecular scaffolds for drug development. Minor modifications to a peptide's primary sequence can significantly alter its binding properties with a receptor, and screening collections of peptide mutants is a useful technique for probing the receptor-ligand binding domain. Unfortunately, the combinatorial growth of such collections can limit the number of mutations which can be explored using structure-based molecular docking techniques. Genetic algorithm managed peptide mutant screening (GAMPMS) uses a genetic algorithm to conduct a heuristic search of the peptide's mutation space for peptides with optimal binding activity, significantly reducing the computational requirements of the virtual screening. The GAMPMS procedure was implemented and used to explore the binding domain of the nicotinic acetylcholine receptor (nAChR) α3β2-isoform with a library of 64,000 α-conotoxin (α-CTx) MII peptide mutants. To assess GAMPMS's performance, it was compared with a virtual screening procedure that used AutoDock to predict the binding affinity of each of the α-CTx MII peptide mutants with the α3β2-nAChR. The GAMPMS implementation performed AutoDock simulations for as few as 1140 of the 64,000 α-CTx MII peptide mutants and could consistently identify a set of 10 peptides with an aggregated binding energy that was at least 98% of the aggregated binding energy of the 10 top peptides from the exhaustive AutoDock screening.
A novel mating approach for genetic algorithms.
Galán, Severino F; Mengshoel, Ole J; Pinter, Rafael
2013-01-01
Genetic algorithms typically use crossover, which relies on mating a set of selected parents. As part of crossover, random mating is often carried out. A novel approach to parent mating is presented in this work. Our novel approach can be applied in combination with a traditional similarity-based criterion to measure distance between individuals or with a fitness-based criterion. We introduce a parameter called the mating index that allows different mating strategies to be developed within a uniform framework: an exploitative strategy called best-first, an explorative strategy called best-last, and an adaptive strategy called self-adaptive. Self-adaptive mating is defined in the context of the novel algorithm, and aims to achieve a balance between exploitation and exploration in a domain-independent manner. The present work formally defines the novel mating approach, analyzes its behavior, and conducts an extensive experimental study to quantitatively determine its benefits. In the domain of real function optimization, the experiments show that, as the degree of multimodality of the function at hand grows, increasing the mating index improves performance. In the case of the self-adaptive mating strategy, the experiments give strong results for several case studies.
Spacecraft Attitude Maneuver Planning Using Genetic Algorithms
NASA Technical Reports Server (NTRS)
Kornfeld, Richard P.
2004-01-01
A key enabling technology that leads to greater spacecraft autonomy is the capability to autonomously and optimally slew the spacecraft from and to different attitudes while operating under a number of celestial and dynamic constraints. The task of finding an attitude trajectory that meets all the constraints is a formidable one, in particular for orbiting or fly-by spacecraft where the constraints and initial and final conditions are of time-varying nature. This approach for attitude path planning makes full use of a priori constraint knowledge and is computationally tractable enough to be executed onboard a spacecraft. The approach is based on incorporating the constraints into a cost function and using a Genetic Algorithm to iteratively search for and optimize the solution. This results in a directed random search that explores a large part of the solution space while maintaining the knowledge of good solutions from iteration to iteration. A solution obtained this way may be used as is or as an initial solution to initialize additional deterministic optimization algorithms. A number of representative case examples for time-fixed and time-varying conditions yielded search times that are typically on the order of minutes, thus demonstrating the viability of this method. This approach is applicable to all deep space and planet Earth missions requiring greater spacecraft autonomy, and greatly facilitates navigation and science observation planning.
Genetic Network Programming with Intron-Like Nodes
NASA Astrophysics Data System (ADS)
Mabu, Shingo; Chen, Yan; Eto, Shinji; Shimada, Kaoru; Hirasawa, Kotaro
Recently, Genetic Network Programming (GNP) has been proposed, which is an extension of Genetic Algorithm(GA) and Genetic Programming(GP). GNP can make compact programs and can memorize the past history in it implicitly, because it expresses the solution by directed graphs and therefore, it can reuse the nodes. In this research, intron-like nodes are introduced for improving the performance of GNP. The aim of introducing intron-like nodes is to use every node as much as possible. It is found from simulations that the intron-like nodes are useful for improving the training speed and generalization ability.
Optimizing doped libraries by using genetic algorithms
NASA Astrophysics Data System (ADS)
Tomandl, Dirk; Schober, Andreas; Schwienhorst, Andreas
1997-01-01
The insertion of random sequences into protein-encoding genes in combination with biologicalselection techniques has become a valuable tool in the design of molecules that have usefuland possibly novel properties. By employing highly effective screening protocols, a functionaland unique structure that had not been anticipated can be distinguished among a hugecollection of inactive molecules that together represent all possible amino acid combinations.This technique is severely limited by its restriction to a library of manageable size. Oneapproach for limiting the size of a mutant library relies on `doping schemes', where subsetsof amino acids are generated that reveal only certain combinations of amino acids in a proteinsequence. Three mononucleotide mixtures for each codon concerned must be designed, suchthat the resulting codons that are assembled during chemical gene synthesis represent thedesired amino acid mixture on the level of the translated protein. In this paper we present adoping algorithm that `reverse translates' a desired mixture of certain amino acids into threemixtures of mononucleotides. The algorithm is designed to optimally bias these mixturestowards the codons of choice. This approach combines a genetic algorithm with localoptimization strategies based on the downhill simplex method. Disparate relativerepresentations of all amino acids (and stop codons) within a target set can be generated.Optional weighing factors are employed to emphasize the frequencies of certain amino acidsand their codon usage, and to compensate for reaction rates of different mononucleotidebuilding blocks (synthons) during chemical DNA synthesis. The effect of statistical errors thataccompany an experimental realization of calculated nucleotide mixtures on the generatedmixtures of amino acids is simulated. These simulations show that the robustness of differentoptima with respect to small deviations from calculated values depends on their concomitantfitness. Furthermore
The potential of genetic algorithms for conceptual design of rotor systems
NASA Technical Reports Server (NTRS)
Crossley, William A.; Wells, Valana L.; Laananen, David H.
1993-01-01
The capabilities of genetic algorithms as a non-calculus based, global search method make them potentially useful in the conceptual design of rotor systems. Coupling reasonably simple analysis tools to the genetic algorithm was accomplished, and the resulting program was used to generate designs for rotor systems to match requirements similar to those of both an existing helicopter and a proposed helicopter design. This provides a comparison with the existing design and also provides insight into the potential of genetic algorithms in design of new rotors.
Modelling ionosphere using combined memory based and genetic algorithms over the Europe region.
NASA Astrophysics Data System (ADS)
Tomasik, L.
2009-04-01
The state of the ionosphere depends on space weather factors like the intensity of solar activity, magnetic activity, local time, season, unfortunately the dependence is not thoroughly known. Memory based method like K Nearest Neighbor algorithm allows predictions by the similarity between ionosphere states. In mostly the nearest neighbour method is a case based on statistical approach used to predict the ionospheric conditions. In this case part of KNN algorithm was modificated by genetic programming. Genetic programming is a method that permit to automatically making algorithms knowing only general definition of a problem. The paper presents the using KNN whit genetic core algorithm in space weather applications and the use of this method for forecasting and mapping of the ionosphere characteristics, as foF2, M(3000)F2. The proposed algorithm is demonstrating for European area.
A Parallel Genetic Algorithm for Automated Electronic Circuit Design
NASA Technical Reports Server (NTRS)
Long, Jason D.; Colombano, Silvano P.; Haith, Gary L.; Stassinopoulos, Dimitris
2000-01-01
issues in the GA, it is possible to have idle processors. However, as long as the load at each processing node is similar, the processors are kept busy nearly all of the time. In applying GAs to circuit design, a suitable genetic representation 'is that of a circuit-construction program. We discuss one such circuit-construction programming language and show how evolution can generate useful analog circuit designs. This language has the desirable property that virtually all sets of combinations of primitives result in valid circuit graphs. Our system allows circuit size (number of devices), circuit topology, and device values to be evolved. Using a parallel genetic algorithm and circuit simulation software, we present experimental results as applied to three analog filter and two amplifier design tasks. For example, a figure shows an 85 dB amplifier design evolved by our system, and another figure shows the performance of that circuit (gain and frequency response). In all tasks, our system is able to generate circuits that achieve the target specifications.
Comparison of commercially available genetic algorithms: GAs as variable selection tool
NASA Astrophysics Data System (ADS)
Schefzick, Sabine; Bradley, Mary
2004-07-01
Many commercially available software programs claim similar efficiency and accuracy as variable selection tools. Genetic algorithms are commonly used variable selection methods where most relevant variables can be differentiated from `less important' variables using evolutionary computing techniques. However, different vendors offer several algorithms, and the puzzling question is: which one is the appropriate method of choice? In this study, several genetic algorithm tools (e.g. GFA from Cerius2, QuaSAR-Evolution from MOE and Partek's genetic algorithm) were compared. Stepwise multiple linear regression models were generated using the most relevant variables identified by the above genetic algorithms. This procedure led to the successful generation of Quantitative Structure-activity Relationship (QSAR) models for (a) proprietary datasets and (b) the Selwood dataset.
Successful technical trading agents using genetic programming.
Othling, Andrew S.; Kelly, John A.; Pryor, Richard J.; Farnsworth, Grant V.
2004-10-01
Genetic programming (GP) has proved to be a highly versatile and useful tool for identifying relationships in data for which a more precise theoretical construct is unavailable. In this project, we use a GP search to develop trading strategies for agent based economic models. These strategies use stock prices and technical indicators, such as the moving average convergence/divergence and various exponentially weighted moving averages, to generate buy and sell signals. We analyze the effect of complexity constraints on the strategies as well as the relative performance of various indicators. We also present innovations in the classical genetic programming algorithm that appear to improve convergence for this problem. Technical strategies developed by our GP algorithm can be used to control the behavior of agents in economic simulation packages, such as ASPEN-D, adding variety to the current market fundamentals approach. The exploitation of arbitrage opportunities by technical analysts may help increase the efficiency of the simulated stock market, as it does in the real world. By improving the behavior of simulated stock markets, we can better estimate the effects of shocks to the economy due to terrorism or natural disasters.
Koza, J.R.
1994-12-31
The recently-developed genetic programming paradigm is used to evolve a computer program to classify a given protein segment as being a transmembrane domain or non-transmembrane area of the protein. Genetic programming starts with a primordial ooze of randomly generated computer programs composed of available programmatic ingredients and then genetically breeds the population of programs using the Darwinian principle of survival of the fittest and an analog of the naturally occurring genetic operation of crossover (sexual recombination). Automatic function definition enables genetic programming to dynamically create subroutines dynamically during the run. Genetic programming is given a training set of differently-sized protein segments and their correct classification (but no biochemical knowledge, such as hydrophobicity values). Correlation is used as the fitness measure to drive the evolutionary process. The best genetically-evolved program achieves an out-of-sample correlation of 0.968 and an out-of-sample error rate of 1.6%. This error rate is better than that reported for four other algorithms reported at the First International Conference on Intelligent Systems for Molecular Biology. Our genetically evolved program is an instance of an algorithm discovered by an automated learning paradigm that is superior to that written by human investigators.
A Test of Genetic Algorithms in Relevance Feedback.
ERIC Educational Resources Information Center
Lopez-Pujalte, Cristina; Guerrero Bote, Vicente P.; Moya Anegon, Felix de
2002-01-01
Discussion of information retrieval, query optimization techniques, and relevance feedback focuses on genetic algorithms, which are derived from artificial intelligence techniques. Describes an evaluation of different genetic algorithms using a residual collection method and compares results with the Ide dec-hi method (Salton and Buckley, 1990…
A "Hands on" Strategy for Teaching Genetic Algorithms to Undergraduates
ERIC Educational Resources Information Center
Venables, Anne; Tan, Grace
2007-01-01
Genetic algorithms (GAs) are a problem solving strategy that uses stochastic search. Since their introduction (Holland, 1975), GAs have proven to be particularly useful for solving problems that are "intractable" using classical methods. The language of genetic algorithms (GAs) is heavily laced with biological metaphors from evolutionary…
Advanced optimization of permanent magnet wigglers using a genetic algorithm
Hajima, Ryoichi
1995-12-31
In permanent magnet wigglers, magnetic imperfection of each magnet piece causes field error. This field error can be reduced or compensated by sorting magnet pieces in proper order. We showed a genetic algorithm has good property for this sorting scheme. In this paper, this optimization scheme is applied to the case of permanent magnets which have errors in the direction of field. The result shows the genetic algorithm is superior to other algorithms.
Transonic Wing Shape Optimization Using a Genetic Algorithm
NASA Technical Reports Server (NTRS)
Holst, Terry L.; Pulliam, Thomas H.; Kwak, Dochan (Technical Monitor)
2002-01-01
A method for aerodynamic shape optimization based on a genetic algorithm approach is demonstrated. The algorithm is coupled with a transonic full potential flow solver and is used to optimize the flow about transonic wings including multi-objective solutions that lead to the generation of pareto fronts. The results indicate that the genetic algorithm is easy to implement, flexible in application and extremely reliable.
Selfish Gene Algorithm Vs Genetic Algorithm: A Review
NASA Astrophysics Data System (ADS)
Ariff, Norharyati Md; Khalid, Noor Elaiza Abdul; Hashim, Rathiah; Noor, Noorhayati Mohamed
2016-11-01
Evolutionary algorithm is one of the algorithms inspired by the nature. Within little more than a decade hundreds of papers have reported successful applications of EAs. In this paper, the Selfish Gene Algorithms (SFGA), as one of the latest evolutionary algorithms (EAs) inspired from the Selfish Gene Theory which is an interpretation of Darwinian Theory ideas from the biologist Richards Dawkins on 1989. In this paper, following a brief introduction to the Selfish Gene Algorithm (SFGA), the chronology of its evolution is presented. It is the purpose of this paper is to present an overview of the concepts of Selfish Gene Algorithm (SFGA) as well as its opportunities and challenges. Accordingly, the history, step involves in the algorithm are discussed and its different applications together with an analysis of these applications are evaluated.
A New Challenge for Compression Algorithms: Genetic Sequences.
ERIC Educational Resources Information Center
Grumbach, Stephane; Tahi, Fariza
1994-01-01
Analyzes the properties of genetic sequences that cause the failure of classical algorithms used for data compression. A lossless algorithm, which compresses the information contained in DNA and RNA sequences by detecting regularities such as palindromes, is presented. This algorithm combines substitutional and statistical methods and appears to…
Genetic algorithm-based form error evaluation
NASA Astrophysics Data System (ADS)
Cui, Changcai; Li, Bing; Huang, Fugui; Zhang, Rencheng
2007-07-01
Form error evaluation of geometrical products is a nonlinear optimization problem, for which a solution has been attempted by different methods with some complexity. A genetic algorithm (GA) was developed to deal with the problem, which was proved simple to understand and realize, and its key techniques have been investigated in detail. Firstly, the fitness function of GA was discussed emphatically as a bridge between GA and the concrete problems to be solved. Secondly, the real numbers-based representation of the desired solutions in the continual space optimization problem was discussed. Thirdly, many improved evolutionary strategies of GA were described on emphasis. These evolutionary strategies were the selection operation of 'odd number selection plus roulette wheel selection', the crossover operation of 'arithmetic crossover between near relatives and far relatives' and the mutation operation of 'adaptive Gaussian' mutation. After evolutions from generation to generation with the evolutionary strategies, the initial population produced stochastically around the least-squared solutions of the problem would be updated and improved iteratively till the best chromosome or individual of GA appeared. Finally, some examples were given to verify the evolutionary method. Experimental results show that the GA-based method can find desired solutions that are superior to the least-squared solutions except for a few examples in which the GA-based method can obtain similar results to those by the least-squared method. Compared with other optimization techniques, the GA-based method can obtain almost equal results but with less complicated models and computation time.
OPC recipe optimization using genetic algorithm
NASA Astrophysics Data System (ADS)
Asthana, Abhishek; Wilkinson, Bill; Power, Dave
2016-03-01
Optimization of OPC recipes is not trivial due to multiple parameters that need tuning and their correlation. Usually, no standard methodologies exist for choosing the initial recipe settings, and in the keyword development phase, parameters are chosen either based on previous learning, vendor recommendations, or to resolve specific problems on particular special constructs. Such approaches fail to holistically quantify the effects of parameters on other or possible new designs, and to an extent are based on the keyword developer's intuition. In addition, when a quick fix is needed for a new design, numerous customization statements are added to the recipe, which make it more complex. The present work demonstrates the application of Genetic Algorithm (GA) technique for optimizing OPC recipes. GA is a search technique that mimics Darwinian natural selection and has applications in various science and engineering disciplines. In this case, GA search heuristic is applied to two problems: (a) an overall OPC recipe optimization with respect to selected parameters and, (b) application of GA to improve printing and via coverage at line end geometries. As will be demonstrated, the optimized recipe significantly reduced the number of ORC violations for case (a). For case (b) line end for various features showed significant printing and filling improvement.
Lunar Habitat Optimization Using Genetic Algorithms
NASA Technical Reports Server (NTRS)
SanScoucie, M. P.; Hull, P. V.; Tinker, M. L.; Dozier, G. V.
2007-01-01
Long-duration surface missions to the Moon and Mars will require bases to accommodate habitats for the astronauts. Transporting the materials and equipment required to build the necessary habitats is costly and difficult. The materials chosen for the habitat walls play a direct role in protection against each of the mentioned hazards. Choosing the best materials, their configuration, and the amount required is extremely difficult due to the immense size of the design region. Clearly, an optimization method is warranted for habitat wall design. Standard optimization techniques are not suitable for problems with such large search spaces; therefore, a habitat wall design tool utilizing genetic algorithms (GAs) has been developed. GAs use a "survival of the fittest" philosophy where the most fit individuals are more likely to survive and reproduce. This habitat design optimization tool is a multiobjective formulation of up-mass, heat loss, structural analysis, meteoroid impact protection, and radiation protection. This Technical Publication presents the research and development of this tool as well as a technique for finding the optimal GA search parameters.
Closed Loop System Identification with Genetic Algorithms
NASA Technical Reports Server (NTRS)
Whorton, Mark S.
2004-01-01
High performance control design for a flexible space structure is challenging since high fidelity plant models are di.cult to obtain a priori. Uncertainty in the control design models typically require a very robust, low performance control design which must be tuned on-orbit to achieve the required performance. Closed loop system identi.cation is often required to obtain a multivariable open loop plant model based on closed-loop response data. In order to provide an accurate initial plant model to guarantee convergence for standard local optimization methods, this paper presents a global parameter optimization method using genetic algorithms. A minimal representation of the state space dynamics is employed to mitigate the non-uniqueness and over-parameterization of general state space realizations. This control-relevant system identi.cation procedure stresses the joint nature of the system identi.cation and control design problem by seeking to obtain a model that minimizes the di.erence between the predicted and actual closed-loop performance.
Dynamical genetic programming in XCSF.
Preen, Richard J; Bull, Larry
2013-01-01
A number of representation schemes have been presented for use within learning classifier systems, ranging from binary encodings to artificial neural networks. This paper presents results from an investigation into using a temporally dynamic symbolic representation within the XCSF learning classifier system. In particular, dynamical arithmetic networks are used to represent the traditional condition-action production system rules to solve continuous-valued reinforcement learning problems and to perform symbolic regression, finding competitive performance with traditional genetic programming on a number of composite polynomial tasks. In addition, the network outputs are later repeatedly sampled at varying temporal intervals to perform multistep-ahead predictions of a financial time series.
A genetic algorithm for solving supply chain network design model
NASA Astrophysics Data System (ADS)
Firoozi, Z.; Ismail, N.; Ariafar, S. H.; Tang, S. H.; Ariffin, M. K. M. A.
2013-09-01
Network design is by nature costly and optimization models play significant role in reducing the unnecessary cost components of a distribution network. This study proposes a genetic algorithm to solve a distribution network design model. The structure of the chromosome in the proposed algorithm is defined in a novel way that in addition to producing feasible solutions, it also reduces the computational complexity of the algorithm. Computational results are presented to show the algorithm performance.
GenMin: An enhanced genetic algorithm for global optimization
NASA Astrophysics Data System (ADS)
Tsoulos, Ioannis G.; Lagaris, I. E.
2008-06-01
A new method that employs grammatical evolution and a stopping rule for finding the global minimum of a continuous multidimensional, multimodal function is considered. The genetic algorithm used is a hybrid genetic algorithm in conjunction with a local search procedure. We list results from numerical experiments with a series of test functions and we compare with other established global optimization methods. The accompanying software accepts objective functions coded either in Fortran 77 or in C++. Program summaryProgram title: GenMin Catalogue identifier: AEAR_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEAR_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 35 810 No. of bytes in distributed program, including test data, etc.: 436 613 Distribution format: tar.gz Programming language: GNU-C++, GNU-C, GNU Fortran 77 Computer: The tool is designed to be portable in all systems running the GNU C++ compiler Operating system: The tool is designed to be portable in all systems running the GNU C++ compiler RAM: 200 KB Word size: 32 bits Classification: 4.9 Nature of problem: A multitude of problems in science and engineering are often reduced to minimizing a function of many variables. There are instances that a local optimum does not correspond to the desired physical solution and hence the search for a better solution is required. Local optimization techniques are frequently trapped in local minima. Global optimization is hence the appropriate tool. For example, solving a nonlinear system of equations via optimization, employing a least squares type of objective, one may encounter many local minima that do not correspond to solutions (i.e. they are far from zero). Solution method: Grammatical evolution and a stopping rule. Running time: Depending on the
Genetic algorithm based fuzzy control of spacecraft autonomous rendezvous
NASA Technical Reports Server (NTRS)
Karr, C. L.; Freeman, L. M.; Meredith, D. L.
1990-01-01
The U.S. Bureau of Mines is currently investigating ways to combine the control capabilities of fuzzy logic with the learning capabilities of genetic algorithms. Fuzzy logic allows for the uncertainty inherent in most control problems to be incorporated into conventional expert systems. Although fuzzy logic based expert systems have been used successfully for controlling a number of physical systems, the selection of acceptable fuzzy membership functions has generally been a subjective decision. High performance fuzzy membership functions for a fuzzy logic controller that manipulates a mathematical model simulating the autonomous rendezvous of spacecraft are learned using a genetic algorithm, a search technique based on the mechanics of natural genetics. The membership functions learned by the genetic algorithm provide for a more efficient fuzzy logic controller than membership functions selected by the authors for the rendezvous problem. Thus, genetic algorithms are potentially an effective and structured approach for learning fuzzy membership functions.
NASA Astrophysics Data System (ADS)
López-Medina, Mario E.; Vázquez-Montiel, Sergio; Herrera-Vázquez, Joel
2008-04-01
The Genetic Algorithms, GAs, are a method of global optimization that we use in the stage of optimization in the design of optical systems. In the case of optical design and optimization, the efficiency and convergence speed of GAs are related with merit function, crossover operator, and mutation operator. In this study we present a comparison between several genetic algorithms implementations using different optical systems, like achromatic cemented doublet, air spaced doublet and telescopes. We do the comparison varying the type of design parameters and the number of parameters to be optimized. We also implement the GAs using discreet parameters with binary chains and with continuous parameter using real numbers in the chromosome; analyzing the differences in the time taken to find the solution and the precision in the results between discreet and continuous parameters. Additionally, we use different merit function to optimize the same optical system. We present the obtained results in tables, graphics and a detailed example; and of the comparison we conclude which is the best way to implement GAs for design and optimization optical system. The programs developed for this work were made using the C programming language and OSLO for the simulation of the optical systems.
Restart-Based Genetic Algorithm for the Quadratic Assignment Problem
NASA Astrophysics Data System (ADS)
Misevicius, Alfonsas
The power of genetic algorithms (GAs) has been demonstrated for various domains of the computer science, including combinatorial optimization. In this paper, we propose a new conceptual modification of the genetic algorithm entitled a "restart-based genetic algorithm" (RGA). An effective implementation of RGA for a well-known combinatorial optimization problem, the quadratic assignment problem (QAP), is discussed. The results obtained from the computational experiments on the QAP instances from the publicly available library QAPLIB show excellent performance of RGA. This is especially true for the real-life like QAPs.
Absolute GPS Positioning Using Genetic Algorithms
NASA Astrophysics Data System (ADS)
Ramillien, G.
A new inverse approach for restoring the absolute coordinates of a ground -based station from three or four observed GPS pseudo-ranges is proposed. This stochastic method is based on simulations of natural evolution named genetic algorithms (GA). These iterative procedures provide fairly good and robust estimates of the absolute positions in the Earth's geocentric reference system. For comparison/validation, GA results are compared to the ones obtained using the classical linearized least-square scheme for the determination of the XYZ location proposed by Bancroft (1985) which is strongly limited by the number of available observations (i.e. here, the number of input pseudo-ranges must be four). The r.m.s. accuracy of the non -linear cost function reached by this latter method is typically ~10-4 m2 corresponding to ~300-500-m accuracies for each geocentric coordinate. However, GA can provide more acceptable solutions (r.m.s. errors < 10-5 m2), even when only three instantaneous pseudo-ranges are used, such as a lost of lock during a GPS survey. Tuned GA parameters used in different simulations are N=1000 starting individuals, as well as Pc=60-70% and Pm=30-40% for the crossover probability and mutation rate, respectively. Statistical tests on the ability of GA to recover acceptable coordinates in presence of important levels of noise are made simulating nearly 3000 random samples of erroneous pseudo-ranges. Here, two main sources of measurement errors are considered in the inversion: (1) typical satellite-clock errors and/or 300-metre variance atmospheric delays, and (2) Geometrical Dilution of Precision (GDOP) due to the particular GPS satellite configuration at the time of acquisition. Extracting valuable information and even from low-quality starting range observations, GA offer an interesting alternative for high -precision GPS positioning.
The Genetic Programming of Industrial Microorganisms.
ERIC Educational Resources Information Center
Hopwood, David A.
1981-01-01
Traces the development of the field of industrial microbial genetics, describing a range of techniques for genetic programing. Includes a discussion of site-directed mutagenesis, protoplast fusion, and recombinant DNA manipulations. (CS)
Quantum Algorithm for Linear Programming Problems
NASA Astrophysics Data System (ADS)
Joag, Pramod; Mehendale, Dhananjay
The quantum algorithm (PRL 103, 150502, 2009) solves a system of linear equations with exponential speedup over existing classical algorithms. We show that the above algorithm can be readily adopted in the iterative algorithms for solving linear programming (LP) problems. The first iterative algorithm that we suggest for LP problem follows from duality theory. It consists of finding nonnegative solution of the equation forduality condition; forconstraints imposed by the given primal problem and for constraints imposed by its corresponding dual problem. This problem is called the problem of nonnegative least squares, or simply the NNLS problem. We use a well known method for solving the problem of NNLS due to Lawson and Hanson. This algorithm essentially consists of solving in each iterative step a new system of linear equations . The other iterative algorithms that can be used are those based on interior point methods. The same technique can be adopted for solving network flow problems as these problems can be readily formulated as LP problems. The suggested quantum algorithm cansolveLP problems and Network Flow problems of very large size involving millions of variables.
Atmospheric Downscaling using Genetic Programming
NASA Astrophysics Data System (ADS)
Zerenner, Tanja; Venema, Victor; Simmer, Clemens
2013-04-01
Coupling models for the different components of the Soil-Vegetation-Atmosphere-System requires up-and downscaling procedures. Subject of our work is the downscaling scheme used to derive high resolution forcing data for land-surface and subsurface models from coarser atmospheric model output. The current downscaling scheme [Schomburg et. al. 2010, 2012] combines a bi-quadratic spline interpolation, deterministic rules and autoregressive noise. For the development of the scheme, training and validation data sets have been created by carrying out high-resolution runs of the atmospheric model. The deterministic rules in this scheme are partly based on known physical relations and partly determined by an automated search for linear relationships between the high resolution fields of the atmospheric model output and high resolution data on surface characteristics. Up to now deterministic rules are available for downscaling surface pressure and partially, depending on the prevailing weather conditions, for near surface temperature and radiation. Aim of our work is to improve those rules and to find deterministic rules for the remaining variables, which require downscaling, e.g. precipitation or near surface specifc humidity. To accomplish that, we broaden the search by allowing for interdependencies between different atmospheric parameters, non-linear relations, non-local and time-lagged relations. To cope with the vast number of possible solutions, we use genetic programming, a method from machine learning, which is based on the principles of natural evolution. We are currently working with GPLAB, a Genetic Programming toolbox for Matlab. At first we have tested the GP system to retrieve the known physical rule for downscaling surface pressure, i.e. the hydrostatic equation, from our training data. We have found this to be a simple task to the GP system. Furthermore we have improved accuracy and efficiency of the GP solution by implementing constant variation and
Optimization of computer-generated binary holograms using genetic algorithms
NASA Astrophysics Data System (ADS)
Cojoc, Dan; Alexandrescu, Adrian
1999-11-01
The aim of this paper is to compare genetic algorithms against direct point oriented coding in the design of binary phase Fourier holograms, computer generated. These are used as fan-out elements for free space optical interconnection. Genetic algorithms are optimization methods which model the natural process of genetic evolution. The configuration of the hologram is encoded to form a chromosome. To start the optimization, a population of different chromosomes randomly generated is considered. The chromosomes compete, mate and mutate until the best chromosome is obtained according to a cost function. After explaining the operators that are used by genetic algorithms, this paper presents two examples with 32 X 32 genes in a chromosome. The crossover type and the number of mutations are shown to be important factors which influence the convergence of the algorithm. GA is demonstrated to be a useful tool to design namely binary phase holograms of complicate structures.
Genetic Algorithms Applied to Multi-Objective Aerodynamic Shape Optimization
NASA Technical Reports Server (NTRS)
Holst, Terry L.
2004-01-01
A genetic algorithm approach suitable for solving multi-objective optimization problems is described and evaluated using a series of aerodynamic shape optimization problems. Several new features including two variations of a binning selection algorithm and a gene-space transformation procedure are included. The genetic algorithm is suitable for finding pareto optimal solutions in search spaces that are defined by any number of genes and that contain any number of local extrema. A new masking array capability is included allowing any gene or gene subset to be eliminated as decision variables from the design space. This allows determination of the effect of a single gene or gene subset on the pareto optimal solution. Results indicate that the genetic algorithm optimization approach is flexible in application and reliable. The binning selection algorithms generally provide pareto front quality enhancements and moderate convergence efficiency improvements for most of the problems solved.
Genetic Algorithms Applied to Multi-Objective Aerodynamic Shape Optimization
NASA Technical Reports Server (NTRS)
Holst, Terry L.
2005-01-01
A genetic algorithm approach suitable for solving multi-objective problems is described and evaluated using a series of aerodynamic shape optimization problems. Several new features including two variations of a binning selection algorithm and a gene-space transformation procedure are included. The genetic algorithm is suitable for finding Pareto optimal solutions in search spaces that are defined by any number of genes and that contain any number of local extrema. A new masking array capability is included allowing any gene or gene subset to be eliminated as decision variables from the design space. This allows determination of the effect of a single gene or gene subset on the Pareto optimal solution. Results indicate that the genetic algorithm optimization approach is flexible in application and reliable. The binning selection algorithms generally provide Pareto front quality enhancements and moderate convergence efficiency improvements for most of the problems solved.
Shape Optimization of Cochlear Implant Electrode Array Using Genetic Algorithms
2007-11-02
Shape Optimization of Cochlear Implant Electrode Array using Genetic Algorithms Charles T.M. Choi, Ph.D., senior member, IEEE Department of...c.t.choi@ieee.org Abstract−Finite element analysis is used to compute the current distribution of the human cochlea during cochlear implant electrical...stimulation. Genetic algorithms are then applied in conjunction with the finite element analysis to optimize the shape of cochlear implant electrode array
Internal quantum efficiency analysis of solar cell by genetic algorithm
Xiong, Kanglin; Yang, Hui; Lu, Shulong; Zhou, Taofei; Wang, Rongxin; Qiu, Kai; Dong, Jianrong; Jiang, Desheng
2010-11-15
To investigate factors limiting the performance of a GaAs solar cell, genetic algorithm is employed to fit the experimentally measured internal quantum efficiency (IQE) in the full spectra range. The device parameters such as diffusion lengths and surface recombination velocities are extracted. Electron beam induced current (EBIC) is performed in the base region of the cell with obtained diffusion length agreeing with the fit result. The advantage of genetic algorithm is illustrated. (author)
Superscattering of light optimized by a genetic algorithm
Mirzaei, Ali Miroshnichenko, Andrey E.; Shadrivov, Ilya V.; Kivshar, Yuri S.
2014-07-07
We analyse scattering of light from multi-layer plasmonic nanowires and employ a genetic algorithm for optimizing the scattering cross section. We apply the mode-expansion method using experimental data for material parameters to demonstrate that our genetic algorithm allows designing realistic core-shell nanostructures with the superscattering effect achieved at any desired wavelength. This approach can be employed for optimizing both superscattering and cloaking at different wavelengths in the visible spectral range.
NASA Astrophysics Data System (ADS)
Vasant, P.; Ganesan, T.; Elamvazuthi, I.
2012-11-01
A fairly reasonable result was obtained for non-linear engineering problems using the optimization techniques such as neural network, genetic algorithms, and fuzzy logic independently in the past. Increasingly, hybrid techniques are being used to solve the non-linear problems to obtain better output. This paper discusses the use of neuro-genetic hybrid technique to optimize the geological structure mapping which is known as seismic survey. It involves the minimization of objective function subject to the requirement of geophysical and operational constraints. In this work, the optimization was initially performed using genetic programming, and followed by hybrid neuro-genetic programming approaches. Comparative studies and analysis were then carried out on the optimized results. The results indicate that the hybrid neuro-genetic hybrid technique produced better results compared to the stand-alone genetic programming method.
Multiple Query Evaluation Based on an Enhanced Genetic Algorithm.
ERIC Educational Resources Information Center
Tamine, Lynda; Chrisment, Claude; Boughanem, Mohand
2003-01-01
Explains the use of genetic algorithms to combine results from multiple query evaluations to improve relevance in information retrieval. Discusses niching techniques, relevance feedback techniques, and evolution heuristics, and compares retrieval results obtained by both genetic multiple query evaluation and classical single query evaluation…
Optimization of genomic selection training populations with a genetic algorithm
Technology Transfer Automated Retrieval System (TEKTRAN)
In this article, we derive a computationally efficient statistic to measure the reliability of estimates of genetic breeding values for a fixed set of genotypes based on a given training set of genotypes and phenotypes. We adopt a genetic algorithm scheme to find a training set of certain size from ...
Polyglot programming in applications used for genetic data analysis.
Nowak, Robert M
2014-01-01
Applications used for the analysis of genetic data process large volumes of data with complex algorithms. High performance, flexibility, and a user interface with a web browser are required by these solutions, which can be achieved by using multiple programming languages. In this study, I developed a freely available framework for building software to analyze genetic data, which uses C++, Python, JavaScript, and several libraries. This system was used to build a number of genetic data processing applications and it reduced the time and costs of development.
Polyglot Programming in Applications Used for Genetic Data Analysis
Nowak, Robert M.
2014-01-01
Applications used for the analysis of genetic data process large volumes of data with complex algorithms. High performance, flexibility, and a user interface with a web browser are required by these solutions, which can be achieved by using multiple programming languages. In this study, I developed a freely available framework for building software to analyze genetic data, which uses C++, Python, JavaScript, and several libraries. This system was used to build a number of genetic data processing applications and it reduced the time and costs of development. PMID:25197633
Data Mining Feature Subset Weighting and Selection Using Genetic Algorithms
2002-03-01
material on data mining, classification, feature subset selection and weighting problem and genetic algorithms. 1.1.1 What is Data Mining? Data...to find the individual from the search space with the best “genetic material ” . A wide range of genetic representations (e.g., bit vectors, LISP...of non-coding material makes crossover less active within building block boundaries, but does not affect mutation’s constructive and destructive
Evolving aerodynamic airfoils for wind turbines through a genetic algorithm
NASA Astrophysics Data System (ADS)
Hernández, J. J.; Gómez, E.; Grageda, J. I.; Couder, C.; Solís, A.; Hanotel, C. L.; Ledesma, JI
2017-01-01
Nowadays, genetic algorithms stand out for airfoil optimisation, due to the virtues of mutation and crossing-over techniques. In this work we propose a genetic algorithm with arithmetic crossover rules. The optimisation criteria are taken to be the maximisation of both aerodynamic efficiency and lift coefficient, while minimising drag coefficient. Such algorithm shows greatly improvements in computational costs, as well as a high performance by obtaining optimised airfoils for Mexico City's specific wind conditions from generic wind turbines designed for higher Reynolds numbers, in few iterations.
An Algorithm for Linearly Constrained Nonlinear Programming Programming Problems.
1980-01-01
ALGORITHM FOR LINEARLY CONSTRAINED NONLINEAR PROGRAMMING PROBLEMS Mokhtar S. Bazaraa and Jamie J. Goode In this paper an algorithm for solving a linearly...distance pro- gramr.ing, as in the works of Bazaraa and Goode 12], and Wolfe [16 can be used for solving this problem. Special methods that take advantage of...34 Pacific Journal of Mathematics, Volume 16, pp. 1-3, 1966. 2. M. S. Bazaraa and J. j. Goode, "An Algorithm for Finding the Shortest Element of a
Novel hybrid genetic algorithm for progressive multiple sequence alignment.
Afridi, Muhammad Ishaq
2013-01-01
The family of evolutionary or genetic algorithms is used in various fields of bioinformatics. Genetic algorithms (GAs) can be used for simultaneous comparison of a large pool of DNA or protein sequences. This article explains how the GA is used in combination with other methods like the progressive multiple sequence alignment strategy to get an optimal multiple sequence alignment (MSA). Optimal MSA get much importance in the field of bioinformatics and some other related disciplines. Evolutionary algorithms evolve and improve their performance. In this optimisation, the initial pair-wise alignment is achieved through a progressive method and then a good objective function is used to select and align more alignments and profiles. Child and subpopulation initialisation is based upon changes in the probability of similarity or the distance matrix of the alignment population. In this genetic algorithm, optimisation of mutation, crossover and migration in the population of candidate solution reflect events of natural organic evolution.
Genetic-based EM algorithm for learning Gaussian mixture models.
Pernkopf, Franz; Bouchaffra, Djamel
2005-08-01
We propose a genetic-based expectation-maximization (GA-EM) algorithm for learning Gaussian mixture models from multivariate data. This algorithm is capable of selecting the number of components of the model using the minimum description length (MDL) criterion. Our approach benefits from the properties of Genetic algorithms (GA) and the EM algorithm by combination of both into a single procedure. The population-based stochastic search of the GA explores the search space more thoroughly than the EM method. Therefore, our algorithm enables escaping from local optimal solutions since the algorithm becomes less sensitive to its initialization. The GA-EM algorithm is elitist which maintains the monotonic convergence property of the EM algorithm. The experiments on simulated and real data show that the GA-EM outperforms the EM method since: 1) We have obtained a better MDL score while using exactly the same termination condition for both algorithms. 2) Our approach identifies the number of components which were used to generate the underlying data more often than the EM algorithm.
A genetic-based algorithm for personalized resistance training
Kiely, J; Suraci, B; Collins, DJ; de Lorenzo, D; Pickering, C; Grimaldi, KA
2016-01-01
Association studies have identified dozens of genetic variants linked to training responses and sport-related traits. However, no intervention studies utilizing the idea of personalised training based on athlete's genetic profile have been conducted. Here we propose an algorithm that allows achieving greater results in response to high- or low-intensity resistance training programs by predicting athlete's potential for the development of power and endurance qualities with the panel of 15 performance-associated gene polymorphisms. To develop and validate such an algorithm we performed two studies in independent cohorts of male athletes (study 1: athletes from different sports (n = 28); study 2: soccer players (n = 39)). In both studies athletes completed an eight-week high- or low-intensity resistance training program, which either matched or mismatched their individual genotype. Two variables of explosive power and aerobic fitness, as measured by the countermovement jump (CMJ) and aerobic 3-min cycle test (Aero3) were assessed pre and post 8 weeks of resistance training. In study 1, the athletes from the matched groups (i.e. high-intensity trained with power genotype or low-intensity trained with endurance genotype) significantly increased results in CMJ (P = 0.0005) and Aero3 (P = 0.0004). Whereas, athletes from the mismatched group (i.e. high-intensity trained with endurance genotype or low-intensity trained with power genotype) demonstrated non-significant improvements in CMJ (P = 0.175) and less prominent results in Aero3 (P = 0.0134). In study 2, soccer players from the matched group also demonstrated significantly greater (P < 0.0001) performance changes in both tests compared to the mismatched group. Among non- or low responders of both studies, 82% of athletes (both for CMJ and Aero3) were from the mismatched group (P < 0.0001). Our results indicate that matching the individual's genotype with the appropriate training modality leads to more effective
A genetic-based algorithm for personalized resistance training.
Jones, N; Kiely, J; Suraci, B; Collins, D J; de Lorenzo, D; Pickering, C; Grimaldi, K A
2016-06-01
Association studies have identified dozens of genetic variants linked to training responses and sport-related traits. However, no intervention studies utilizing the idea of personalised training based on athlete's genetic profile have been conducted. Here we propose an algorithm that allows achieving greater results in response to high- or low-intensity resistance training programs by predicting athlete's potential for the development of power and endurance qualities with the panel of 15 performance-associated gene polymorphisms. To develop and validate such an algorithm we performed two studies in independent cohorts of male athletes (study 1: athletes from different sports (n = 28); study 2: soccer players (n = 39)). In both studies athletes completed an eight-week high- or low-intensity resistance training program, which either matched or mismatched their individual genotype. Two variables of explosive power and aerobic fitness, as measured by the countermovement jump (CMJ) and aerobic 3-min cycle test (Aero3) were assessed pre and post 8 weeks of resistance training. In study 1, the athletes from the matched groups (i.e. high-intensity trained with power genotype or low-intensity trained with endurance genotype) significantly increased results in CMJ (P = 0.0005) and Aero3 (P = 0.0004). Whereas, athletes from the mismatched group (i.e. high-intensity trained with endurance genotype or low-intensity trained with power genotype) demonstrated non-significant improvements in CMJ (P = 0.175) and less prominent results in Aero3 (P = 0.0134). In study 2, soccer players from the matched group also demonstrated significantly greater (P < 0.0001) performance changes in both tests compared to the mismatched group. Among non- or low responders of both studies, 82% of athletes (both for CMJ and Aero3) were from the mismatched group (P < 0.0001). Our results indicate that matching the individual's genotype with the appropriate training modality leads to more effective
Genetics and the unity of biology. Program
Not Available
1988-12-31
International Congresses of Genetics, convened just once every five years, provide a rare opportunity for overview in the field of genetic engineering. The Congress, held August 20-27, 1988 in Toronto, Canada focused on the theme Genetics and the Unity of Biology, which was chosen because the concepts of modern genetics have provided biology with a unifying theoretical structure. This program guide contains a schedule of all Congress activities and a listing of all Symposia, Workshops and Poster Sessions held.
An Agent Inspired Reconfigurable Computing Implementation of a Genetic Algorithm
NASA Technical Reports Server (NTRS)
Weir, John M.; Wells, B. Earl
2003-01-01
Many software systems have been successfully implemented using an agent paradigm which employs a number of independent entities that communicate with one another to achieve a common goal. The distributed nature of such a paradigm makes it an excellent candidate for use in high speed reconfigurable computing hardware environments such as those present in modem FPGA's. In this paper, a distributed genetic algorithm that can be applied to the agent based reconfigurable hardware model is introduced. The effectiveness of this new algorithm is evaluated by comparing the quality of the solutions found by the new algorithm with those found by traditional genetic algorithms. The performance of a reconfigurable hardware implementation of the new algorithm on an FPGA is compared to traditional single processor implementations.
Cloud identification using genetic algorithms and massively parallel computation
NASA Technical Reports Server (NTRS)
Buckles, Bill P.; Petry, Frederick E.
1996-01-01
As a Guest Computational Investigator under the NASA administered component of the High Performance Computing and Communication Program, we implemented a massively parallel genetic algorithm on the MasPar SIMD computer. Experiments were conducted using Earth Science data in the domains of meteorology and oceanography. Results obtained in these domains are competitive with, and in most cases better than, similar problems solved using other methods. In the meteorological domain, we chose to identify clouds using AVHRR spectral data. Four cloud speciations were used although most researchers settle for three. Results were remarkedly consistent across all tests (91% accuracy). Refinements of this method may lead to more timely and complete information for Global Circulation Models (GCMS) that are prevalent in weather forecasting and global environment studies. In the oceanographic domain, we chose to identify ocean currents from a spectrometer having similar characteristics to AVHRR. Here the results were mixed (60% to 80% accuracy). Given that one is willing to run the experiment several times (say 10), then it is acceptable to claim the higher accuracy rating. This problem has never been successfully automated. Therefore, these results are encouraging even though less impressive than the cloud experiment. Successful conclusion of an automated ocean current detection system would impact coastal fishing, naval tactics, and the study of micro-climates. Finally we contributed to the basic knowledge of GA (genetic algorithm) behavior in parallel environments. We developed better knowledge of the use of subpopulations in the context of shared breeding pools and the migration of individuals. Rigorous experiments were conducted based on quantifiable performance criteria. While much of the work confirmed current wisdom, for the first time we were able to submit conclusive evidence. The software developed under this grant was placed in the public domain. An extensive user
Large-scale sequential quadratic programming algorithms
Eldersveld, S.K.
1992-09-01
The problem addressed is the general nonlinear programming problem: finding a local minimizer for a nonlinear function subject to a mixture of nonlinear equality and inequality constraints. The methods studied are in the class of sequential quadratic programming (SQP) algorithms, which have previously proved successful for problems of moderate size. Our goal is to devise an SQP algorithm that is applicable to large-scale optimization problems, using sparse data structures and storing less curvature information but maintaining the property of superlinear convergence. The main features are: 1. The use of a quasi-Newton approximation to the reduced Hessian of the Lagrangian function. Only an estimate of the reduced Hessian matrix is required by our algorithm. The impact of not having available the full Hessian approximation is studied and alternative estimates are constructed. 2. The use of a transformation matrix Q. This allows the QP gradient to be computed easily when only the reduced Hessian approximation is maintained. 3. The use of a reduced-gradient form of the basis for the null space of the working set. This choice of basis is more practical than an orthogonal null-space basis for large-scale problems. The continuity condition for this choice is proven. 4. The use of incomplete solutions of quadratic programming subproblems. Certain iterates generated by an active-set method for the QP subproblem are used in place of the QP minimizer to define the search direction for the nonlinear problem. An implementation of the new algorithm has been obtained by modifying the code MINOS. Results and comparisons with MINOS and NPSOL are given for the new algorithm on a set of 92 test problems.
Finding Bent Functions Using Genetic Algorithms
2009-09-01
2009. [20] R. N. Williams , “A Painless Guide to CRC Error Detection Algorithms,” http://www.cs.waikato.ac.nz/~312/crc.txt, last accessed 31AUG09. 179...Naval Postgraduate School Monterey, CA 10. Dr. Herschel Loomis Naval Postgraduate School Monterey, CA 180 11. Mr. Kyprianos Papadimitriou
A parallel genetic algorithm for the set partitioning problem
Levine, D.
1994-05-01
In this dissertation the author reports on his efforts to develop a parallel genetic algorithm and apply it to the solution of set partitioning problem -- a difficult combinatorial optimization problem used by many airlines as a mathematical model for flight crew scheduling. He developed a distributed steady-state genetic algorithm in conjunction with a specialized local search heuristic for solving the set partitioning problem. The genetic algorithm is based on an island model where multiple independent subpopulations each run a steady-state genetic algorithm on their subpopulation and occasionally fit strings migrate between the subpopulations. Tests on forty real-world set partitioning problems were carried out on up to 128 nodes of an IBM SP1 parallel computer. The authors found that performance, as measured by the quality of the solution found and the iteration on which it was found, improved as additional subpopulation found and the iteration on which it was found, improved as additional subpopulations were added to the computation. With larger numbers of subpopulations the genetic algorithm was regularly able to find the optimal solution to problems having up to a few thousand integer variables. In two cases, high-quality integer feasible solutions were found for problems with 36,699 and 43,749 integer variables, respectively. A notable limitation they found was the difficulty solving problems with many constraints.
A Modified Decision Tree Algorithm Based on Genetic Algorithm for Mobile User Classification Problem
Liu, Dong-sheng; Fan, Shu-jiang
2014-01-01
In order to offer mobile customers better service, we should classify the mobile user firstly. Aimed at the limitations of previous classification methods, this paper puts forward a modified decision tree algorithm for mobile user classification, which introduced genetic algorithm to optimize the results of the decision tree algorithm. We also take the context information as a classification attributes for the mobile user and we classify the context into public context and private context classes. Then we analyze the processes and operators of the algorithm. At last, we make an experiment on the mobile user with the algorithm, we can classify the mobile user into Basic service user, E-service user, Plus service user, and Total service user classes and we can also get some rules about the mobile user. Compared to C4.5 decision tree algorithm and SVM algorithm, the algorithm we proposed in this paper has higher accuracy and more simplicity. PMID:24688389
Liu, Dong-sheng; Fan, Shu-jiang
2014-01-01
In order to offer mobile customers better service, we should classify the mobile user firstly. Aimed at the limitations of previous classification methods, this paper puts forward a modified decision tree algorithm for mobile user classification, which introduced genetic algorithm to optimize the results of the decision tree algorithm. We also take the context information as a classification attributes for the mobile user and we classify the context into public context and private context classes. Then we analyze the processes and operators of the algorithm. At last, we make an experiment on the mobile user with the algorithm, we can classify the mobile user into Basic service user, E-service user, Plus service user, and Total service user classes and we can also get some rules about the mobile user. Compared to C4.5 decision tree algorithm and SVM algorithm, the algorithm we proposed in this paper has higher accuracy and more simplicity.
NASA Astrophysics Data System (ADS)
Patel, Sanjaykumar J.; Kheraj, Vipul
2015-07-01
This paper describes a systematic investigation on the use of the genetic algorithm (GA) to accomplish ultra-low reflective multilayer coating designs for optoelectronic device applications. The algorithm is implemented using LabVIEW as a programming tool. The effects of the genetic operators, such as the type of crossover and mutation, as well as algorithm parameters, such as population size and range of search space, on the convergence of design-solution were studied. Finally, the optimal design is obtained in terms of the thickness of each layer for the multilayer AR coating using optimized genetic operators and algorithm parameters. The program is successfully tested to design AR coating in NIR wavelength range to achieve average reflectivity (R) below 10-3 over the spectral bandwidth of 200 nm with different combinations of coating materials in the stack. The random-point crossover operator is found to exhibit a better convergence rate of the solution than single-point and double-point crossover. Periodically re-initializing the thickness value of a randomly selected layer from the stack effectively prevents the solution from becoming trapped in local minima and improves the convergence probability.
Catchcopy Creation Support System Using Electronic Dictionary and Genetic Programming
NASA Astrophysics Data System (ADS)
Matsudaira, Tomomi; Hagiwara, Masafumi
In this paper, we propose a catchcopy creation support system. In respect of a vocabulary and getting an idea, it is difficult for inexperienced people to make a catch copy. This system will support users from these points. In the system, EDR electronic dictionary and Genetic Programming are employed. EDR electronic dictionary which has large-scale knowledge is used as a knowledge base. Genetic programing is used to make catchcopy using some words chosen by user. Proposed system requires arbitrary number of words as an input, and shows words relevant to the input. User chooses words from displayed words. Candidates of catchcopy are made by genetic programing algorithm using chosen words. We implemented a catchcopy creation support system from a viewpoint of a way-of-thinking support tool.
Biased Random-Key Genetic Algorithms for the Winner Determination Problem in Combinatorial Auctions.
de Andrade, Carlos Eduardo; Toso, Rodrigo Franco; Resende, Mauricio G C; Miyazawa, Flávio Keidi
2015-01-01
In this paper we address the problem of picking a subset of bids in a general combinatorial auction so as to maximize the overall profit using the first-price model. This winner determination problem assumes that a single bidding round is held to determine both the winners and prices to be paid. We introduce six variants of biased random-key genetic algorithms for this problem. Three of them use a novel initialization technique that makes use of solutions of intermediate linear programming relaxations of an exact mixed integer linear programming model as initial chromosomes of the population. An experimental evaluation compares the effectiveness of the proposed algorithms with the standard mixed linear integer programming formulation, a specialized exact algorithm, and the best-performing heuristics proposed for this problem. The proposed algorithms are competitive and offer strong results, mainly for large-scale auctions.
[Image reconstruction in electrical impedance tomography based on genetic algorithm].
Hou, Weidong; Mo, Yulong
2003-03-01
Image reconstruction in electrical impedance tomography (EIT) is a highly ill-posed, non-linear inverse problem. The modified Newton-Raphson (MNR) iteration algorithm is deduced from the strictest theoretic analysis. It is an optimization algorithm based on minimizing the object function. The MNR algorithm with regularization technique is usually not stable, due to the serious image reconstruction model error and measurement noise. So the reconstruction precision is not high when used in static EIT. A new static image reconstruction method for EIT based on genetic algorithm (GA-EIT) is proposed in this paper. The experimental results indicate that the performance (including stability, the precision and space resolution in reconstructing the static EIT image) of the GA-EIT algorithm is better than that of the MNR algorithm.
NASA Technical Reports Server (NTRS)
Rogers, David
1991-01-01
G/SPLINES are a hybrid of Friedman's Multivariable Adaptive Regression Splines (MARS) algorithm with Holland's Genetic Algorithm. In this hybrid, the incremental search is replaced by a genetic search. The G/SPLINE algorithm exhibits performance comparable to that of the MARS algorithm, requires fewer least squares computations, and allows significantly larger problems to be considered.
Method of stereo matching based on genetic algorithm
NASA Astrophysics Data System (ADS)
Lu, Chaohui; An, Ping; Zhang, Zhaoyang
2003-09-01
A new stereo matching scheme based on image edge and genetic algorithm (GA) is presented to improve the conventional stereo matching method in this paper. In order to extract robust edge feature for stereo matching, infinite symmetric exponential filter (ISEF) is firstly applied to remove the noise of image, and nonlinear Laplace operator together with local variance of intensity are then used to detect edges. Apart from the detected edge, the polarity of edge pixels is also obtained. As an efficient search method, genetic algorithm is applied to find the best matching pair. For this purpose, some new ideas are developed for applying genetic algorithm to stereo matching. Experimental results show that the proposed methods are effective and can obtain good results.
A genetic algorithm approach in interface and surface structure optimization
Zhang, Jian
2010-01-01
The thesis is divided into two parts. In the first part a global optimization method is developed for the interface and surface structures optimization. Two prototype systems are chosen to be studied. One is Si[001] symmetric tilted grain boundaries and the other is Ag/Au induced Si(111) surface. It is found that Genetic Algorithm is very efficient in finding lowest energy structures in both cases. Not only existing structures in the experiments can be reproduced, but also many new structures can be predicted using Genetic Algorithm. Thus it is shown that Genetic Algorithm is a extremely powerful tool for the material structures predictions. The second part of the thesis is devoted to the explanation of an experimental observation of thermal radiation from three-dimensional tungsten photonic crystal structures. The experimental results seems astounding and confusing, yet the theoretical models in the paper revealed the physics insight behind the phenomena and can well reproduced the experimental results.
Genetic algorithms with permutation coding for multiple sequence alignment.
Ben Othman, Mohamed Tahar; Abdel-Azim, Gamil
2013-08-01
Multiple sequence alignment (MSA) is one of the topics of bio informatics that has seriously been researched. It is known as NP-complete problem. It is also considered as one of the most important and daunting tasks in computational biology. Concerning this a wide number of heuristic algorithms have been proposed to find optimal alignment. Among these heuristic algorithms are genetic algorithms (GA). The GA has mainly two major weaknesses: it is time consuming and can cause local minima. One of the significant aspects in the GA process in MSA is to maximize the similarities between sequences by adding and shuffling the gaps of Solution Coding (SC). Several ways for SC have been introduced. One of them is the Permutation Coding (PC). We propose a hybrid algorithm based on genetic algorithms (GAs) with a PC and 2-opt algorithm. The PC helps to code the MSA solution which maximizes the gain of resources, reliability and diversity of GA. The use of the PC opens the area by applying all functions over permutations for MSA. Thus, we suggest an algorithm to calculate the scoring function for multiple alignments based on PC, which is used as fitness function. The time complexity of the GA is reduced by using this algorithm. Our GA is implemented with different selections strategies and different crossovers. The probability of crossover and mutation is set as one strategy. Relevant patents have been probed in the topic.
Constrained minimization of smooth functions using a genetic algorithm
NASA Technical Reports Server (NTRS)
Moerder, Daniel D.; Pamadi, Bandu N.
1994-01-01
The use of genetic algorithms for minimization of differentiable functions that are subject to differentiable constraints is considered. A technique is demonstrated for converting the solution of the necessary conditions for a constrained minimum into an unconstrained function minimization. This technique is extended as a global constrained optimization algorithm. The theory is applied to calculating minimum-fuel ascent control settings for an energy state model of an aerospace plane.
Automatic page layout using genetic algorithms for electronic albuming
NASA Astrophysics Data System (ADS)
Geigel, Joe; Loui, Alexander C. P.
2000-12-01
In this paper, we describe a flexible system for automatic page layout that makes use of genetic algorithms for albuming applications. The system is divided into two modules, a page creator module which is responsible for distributing images amongst various album pages, and an image placement module which positions images on individual pages. Final page layouts are specified in a textual form using XML for printing or viewing over the Internet. The system makes use of genetic algorithms, a class of search and optimization algorithms that are based on the concepts of biological evolution, for generating solutions with fitness based on graphic design preferences supplied by the user. The genetic page layout algorithm has been incorporated into a web-based prototype system for interactive page layout over the Internet. The prototype system is built using client-server architecture and is implemented in java. The system described in this paper has demonstrated the feasibility of using genetic algorithms for automated page layout in albuming and web-based imaging applications. We believe that the system adequately proves the validity of the concept, providing creative layouts in a reasonable number of iterations. By optimizing the layout parameters of the fitness function, we hope to further improve the quality of the final layout in terms of user preference and computation speed.
A systematic study of genetic algorithms with genotype editing
Huang, C. F.; Rocha, L. M.
2004-01-01
This paper presents our systematic study on an RNA-editing computational model of Genetic Algorithms (GA). This model is constructed based on several genetic editing characteristics that are gleaned from the RNA editing system as observed in several organisms. We have expanded the traditional Genetic Algorithm with artificial editing mechanisms as proposed by [15]. The incorporation of editing mechanisms provides a means for artificial agents with genetic descriptions to gain greater phenotypic plasticity, which may be environmentally regulated. The systematic study of this RNA-editing model has shed some light into the evolutionary implications of RNA editing and how to select proper RNA editors for design of more robust GAS. The results will also show promising applications to complex real-world problems. We expect that the framework proposed will both facilitate determining the evolutionary role of RNA editing in biology, and advance the current state of research in Evolutionary Computation.
Naturally selecting solutions: the use of genetic algorithms in bioinformatics.
Manning, Timmy; Sleator, Roy D; Walsh, Paul
2013-01-01
For decades, computer scientists have looked to nature for biologically inspired solutions to computational problems; ranging from robotic control to scheduling optimization. Paradoxically, as we move deeper into the post-genomics era, the reverse is occurring, as biologists and bioinformaticians look to computational techniques, to solve a variety of biological problems. One of the most common biologically inspired techniques are genetic algorithms (GAs), which take the Darwinian concept of natural selection as the driving force behind systems for solving real world problems, including those in the bioinformatics domain. Herein, we provide an overview of genetic algorithms and survey some of the most recent applications of this approach to bioinformatics based problems.
Acoustic design of rotor blades using a genetic algorithm
NASA Technical Reports Server (NTRS)
Wells, V. L.; Han, A. Y.; Crossley, W. A.
1995-01-01
A genetic algorithm coupled with a simplified acoustic analysis was used to generate low-noise rotor blade designs. The model includes thickness, steady loading and blade-vortex interaction noise estimates. The paper presents solutions for several variations in the fitness function, including thickness noise only, loading noise only, and combinations of the noise types. Preliminary results indicate that the analysis provides reasonable assessments of the noise produced, and that genetic algorithm successfully searches for 'good' designs. The results show that, for a given required thrust coefficient, proper blade design can noticeably reduce the noise produced at some expense to the power requirements.
Genetic algorithms and the search for viable string vacua
NASA Astrophysics Data System (ADS)
Abel, Steven; Rizos, John
2014-08-01
Genetic Algorithms are introduced as a search method for finding string vacua with viable phenomenological properties. It is shown, by testing them against a class of Free Fermionic models, that they are orders of magnitude more efficient than a randomised search. As an example, three generation, exophobic, Pati-Salam models with a top Yukawa occur once in every 1010 models, and yet a Genetic Algorithm can find them after constructing only 105 examples. Such non-deterministic search methods may be the only means to search for Standard Model string vacua with detailed phenomenological requirements.
Air data system optimization using a genetic algorithm
NASA Technical Reports Server (NTRS)
Deshpande, Samir M.; Kumar, Renjith R.; Seywald, Hans; Siemers, Paul M., III
1992-01-01
An optimization method for flush-orifice air data system design has been developed using the Genetic Algorithm approach. The optimization of the orifice array minimizes the effect of normally distributed random noise in the pressure readings on the calculation of air data parameters, namely, angle of attack, sideslip angle and freestream dynamic pressure. The optimization method is applied to the design of Pressure Distribution/Air Data System experiment (PD/ADS) proposed for inclusion in the Aeroassist Flight Experiment (AFE). Results obtained by the Genetic Algorithm method are compared to the results obtained by conventional gradient search method.
Optimization of multicast optical networks with genetic algorithm
NASA Astrophysics Data System (ADS)
Lv, Bo; Mao, Xiangqiao; Zhang, Feng; Qin, Xi; Lu, Dan; Chen, Ming; Chen, Yong; Cao, Jihong; Jian, Shuisheng
2007-11-01
In this letter, aiming to obtain the best multicast performance of optical network in which the video conference information is carried by specified wavelength, we extend the solutions of matrix games with the network coding theory and devise a new method to solve the complex problems of multicast network switching. In addition, an experimental optical network has been testified with best switching strategies by employing the novel numerical solution designed with an effective way of genetic algorithm. The result shows that optimal solutions with genetic algorithm are accordance with the ones with the traditional fictitious play method.
Initialization Method for Grammar-Guided Genetic Programming
NASA Astrophysics Data System (ADS)
García-Arnau, M.; Manrique, D.; Ríos, J.; Rodríguez-Patón, A.
This paper proposes a new tree-generation algorithm for grammarguided genetic programming that includes a parameter to control the maximum size of the trees to be generated. An important feature of this algorithm is that the initial populations generated are adequately distributed in terms of tree size and distribution within the search space. Consequently, genetic programming systems starting from the initial populations generated by the proposed method have a higher convergence speed. Two different problems have been chosen to carry out the experiments: a laboratory test involving searching for arithmetical equalities and the real-world task of breast cancer prognosis. In both problems, comparisons have been made to another five important initialization methods.
Genetic algorithm for extracting rules in discrete domain
Neruda, R.
1995-09-20
We propose a genetic algorithm that evolves families of rules from a set of examples. Inputs and outputs of the problem are discrete and nominal values which makes it difficult to use alternative learning methods that implicitly regard a metric space. A way how to encode sets of rules is presented together with special variants of genetic operators suitable for this encoding. The solution found by means of this process can be used as a core of a rule-based expert system.
Genetic Algorithms and Their Application to the Protein Folding Problem
1993-12-01
mutation, genetic algorithms simulate the Darwin theory of survival of the fittest. The search space is represented by a population of strings upon which... Darwin theory of survival of the fittest by representing the search space as a population of strings upon which genetic operators act to create new...34 International Conference on Tools for Artificial Intelligence, IEEE-TAI 90, 322-7. Cartwright , H. M. & Mott, G. F. (1991). "Looking A:;und: Using Clues
Bellucci, Michael A; Coker, David F
2011-07-28
We describe a new method for constructing empirical valence bond potential energy surfaces using a parallel multilevel genetic program (PMLGP). Genetic programs can be used to perform an efficient search through function space and parameter space to find the best functions and sets of parameters that fit energies obtained by ab initio electronic structure calculations. Building on the traditional genetic program approach, the PMLGP utilizes a hierarchy of genetic programming on two different levels. The lower level genetic programs are used to optimize coevolving populations in parallel while the higher level genetic program (HLGP) is used to optimize the genetic operator probabilities of the lower level genetic programs. The HLGP allows the algorithm to dynamically learn the mutation or combination of mutations that most effectively increase the fitness of the populations, causing a significant increase in the algorithm's accuracy and efficiency. The algorithm's accuracy and efficiency is tested against a standard parallel genetic program with a variety of one-dimensional test cases. Subsequently, the PMLGP is utilized to obtain an accurate empirical valence bond model for proton transfer in 3-hydroxy-gamma-pyrone in gas phase and protic solvent.
Genetic Parallel Programming: design and implementation.
Cheang, Sin Man; Leung, Kwong Sak; Lee, Kin Hong
2006-01-01
This paper presents a novel Genetic Parallel Programming (GPP) paradigm for evolving parallel programs running on a Multi-Arithmetic-Logic-Unit (Multi-ALU) Processor (MAP). The MAP is a Multiple Instruction-streams, Multiple Data-streams (MIMD), general-purpose register machine that can be implemented on modern Very Large-Scale Integrated Circuits (VLSIs) in order to evaluate genetic programs at high speed. For human programmers, writing parallel programs is more difficult than writing sequential programs. However, experimental results show that GPP evolves parallel programs with less computational effort than that of their sequential counterparts. It creates a new approach to evolving a feasible problem solution in parallel program form and then serializes it into a sequential program if required. The effectiveness and efficiency of GPP are investigated using a suite of 14 well-studied benchmark problems. Experimental results show that GPP speeds up evolution substantially.
Adaptable Constrained Genetic Programming: Extensions and Applications
NASA Technical Reports Server (NTRS)
Janikow, Cezary Z.
2005-01-01
An evolutionary algorithm applies evolution-based principles to problem solving. To solve a problem, the user defines the space of potential solutions, the representation space. Sample solutions are encoded in a chromosome-like structure. The algorithm maintains a population of such samples, which undergo simulated evolution by means of mutation, crossover, and survival of the fittest principles. Genetic Programming (GP) uses tree-like chromosomes, providing very rich representation suitable for many problems of interest. GP has been successfully applied to a number of practical problems such as learning Boolean functions and designing hardware circuits. To apply GP to a problem, the user needs to define the actual representation space, by defining the atomic functions and terminals labeling the actual trees. The sufficiency principle requires that the label set be sufficient to build the desired solution trees. The closure principle allows the labels to mix in any arity-consistent manner. To satisfy both principles, the user is often forced to provide a large label set, with ad hoc interpretations or penalties to deal with undesired local contexts. This unfortunately enlarges the actual representation space, and thus usually slows down the search. In the past few years, three different methodologies have been proposed to allow the user to alleviate the closure principle by providing means to define, and to process, constraints on mixing the labels in the trees. Last summer we proposed a new methodology to further alleviate the problem by discovering local heuristics for building quality solution trees. A pilot system was implemented last summer and tested throughout the year. This summer we have implemented a new revision, and produced a User's Manual so that the pilot system can be made available to other practitioners and researchers. We have also designed, and partly implemented, a larger system capable of dealing with much more powerful heuristics.
Haplotyping a single triploid individual based on genetic algorithm.
Wu, Jingli; Chen, Xixi; Li, Xianchen
2014-01-01
The minimum error correction model is an important combinatorial model for haplotyping a single individual. In this article, triploid individual haplotype reconstruction problem is studied by using the model. A genetic algorithm based method GTIHR is presented for reconstructing the triploid individual haplotype. A novel coding method and an effectual hill-climbing operator are introduced for the GTIHR algorithm. This relatively short chromosome code can lead to a smaller solution space, which plays a positive role in speeding up the convergence process. The hill-climbing operator ensures algorithm GTIHR converge at a good solution quickly, and prevents premature convergence simultaneously. The experimental results prove that algorithm GTIHR can be implemented efficiently, and can get higher reconstruction rate than previous algorithms.
Advancing x-ray scattering metrology using inverse genetic algorithms
NASA Astrophysics Data System (ADS)
Hannon, Adam F.; Sunday, Daniel F.; Windover, Donald; Joseph Kline, R.
2016-07-01
We compare the speed and effectiveness of two genetic optimization algorithms to the results of statistical sampling via a Markov chain Monte Carlo algorithm to find which is the most robust method for determining real-space structure in periodic gratings measured using critical dimension small-angle x-ray scattering. Both a covariance matrix adaptation evolutionary strategy and differential evolution algorithm are implemented and compared using various objective functions. The algorithms and objective functions are used to minimize differences between diffraction simulations and measured diffraction data. These simulations are parameterized with an electron density model known to roughly correspond to the real-space structure of our nanogratings. The study shows that for x-ray scattering data, the covariance matrix adaptation coupled with a mean-absolute error log objective function is the most efficient combination of algorithm and goodness of fit criterion for finding structures with little foreknowledge about the underlying fine scale structure features of the nanograting.
Advancing X-ray scattering metrology using inverse genetic algorithms.
Hannon, Adam F; Sunday, Daniel F; Windover, Donald; Kline, R Joseph
2016-01-01
We compare the speed and effectiveness of two genetic optimization algorithms to the results of statistical sampling via a Markov chain Monte Carlo algorithm to find which is the most robust method for determining real space structure in periodic gratings measured using critical dimension small angle X-ray scattering. Both a covariance matrix adaptation evolutionary strategy and differential evolution algorithm are implemented and compared using various objective functions. The algorithms and objective functions are used to minimize differences between diffraction simulations and measured diffraction data. These simulations are parameterized with an electron density model known to roughly correspond to the real space structure of our nanogratings. The study shows that for X-ray scattering data, the covariance matrix adaptation coupled with a mean-absolute error log objective function is the most efficient combination of algorithm and goodness of fit criterion for finding structures with little foreknowledge about the underlying fine scale structure features of the nanograting.
Neural-Network-Biased Genetic Algorithms for Materials Design: Evolutionary Algorithms That Learn.
Patra, Tarak K; Meenakshisundaram, Venkatesh; Hung, Jui-Hsiang; Simmons, David S
2017-02-13
Machine learning has the potential to dramatically accelerate high-throughput approaches to materials design, as demonstrated by successes in biomolecular design and hard materials design. However, in the search for new soft materials exhibiting properties and performance beyond those previously achieved, machine learning approaches are frequently limited by two shortcomings. First, because they are intrinsically interpolative, they are better suited to the optimization of properties within the known range of accessible behavior than to the discovery of new materials with extremal behavior. Second, they require large pre-existing data sets, which are frequently unavailable and prohibitively expensive to produce. Here we describe a new strategy, the neural-network-biased genetic algorithm (NBGA), for combining genetic algorithms, machine learning, and high-throughput computation or experiment to discover materials with extremal properties in the absence of pre-existing data. Within this strategy, predictions from a progressively constructed artificial neural network are employed to bias the evolution of a genetic algorithm, with fitness evaluations performed via direct simulation or experiment. In effect, this strategy gives the evolutionary algorithm the ability to "learn" and draw inferences from its experience to accelerate the evolutionary process. We test this algorithm against several standard optimization problems and polymer design problems and demonstrate that it matches and typically exceeds the efficiency and reproducibility of standard approaches including a direct-evaluation genetic algorithm and a neural-network-evaluated genetic algorithm. The success of this algorithm in a range of test problems indicates that the NBGA provides a robust strategy for employing informatics-accelerated high-throughput methods to accelerate materials design in the absence of pre-existing data.
Optimization of Operation Sequence in CNC Machine Tools Using Genetic Algorithm
NASA Astrophysics Data System (ADS)
Abu Qudeiri, Jaber; Yamamoto, Hidehiko; Ramli, Rizauddin
The productivity of machine tools is significantly improved by using microcomputer based CAD/CAM systems for NC program generation. Currently, many commercial CAD/CAM packages that provide automatic NC programming have been developed and applied to various cutting processes. Many cutting processes machined by CNC machine tools. In this paper, we attempt to find an efficient solution approach to determine the best sequence of operations for a set of operations that located in asymmetrical locations and different levels. In order to find the best sequence of operations that achieves the shortest cutting tool travel path (CTTP), genetic algorithm is introduced. After the sequence is optimized, the G-codes that use to code for the travel time is created. CTTP can be formulated as a special case of the traveling salesman problem (TSP). The incorporation of genetic algorithm and TSP can be included in the commercial CAD/CAM packages to optimize the CTTP during automatic generation of NC programs.
The multi-niche crowding genetic algorithm: Analysis and applications
Cedeno, Walter
1995-09-01
The ability of organisms to evolve and adapt to the environment has provided mother nature with a rich and diverse set of species. Only organisms well adapted to their environment can survive from one generation to the next, transferring on the traits, that made them successful, to their offspring. Competition for resources and the ever changing environment drives some species to extinction and at the same time others evolve to maintain the delicate balance in nature. In this disertation we present the multi-niche crowding genetic algorithm, a computational metaphor to the survival of species in ecological niches in the face of competition. The multi-niche crowding genetic algorithm maintains stable subpopulations of solutions in multiple niches in multimodal landscapes. The algorithm introduces the concept of crowding selection to promote mating among members with qirnilar traits while allowing many members of the population to participate in mating. The algorithm uses worst among most similar replacement policy to promote competition among members with similar traits while allowing competition among members of different niches as well. We present empirical and theoretical results for the success of the multiniche crowding genetic algorithm for multimodal function optimization. The properties of the algorithm using different parameters are examined. We test the performance of the algorithm on problems of DNA Mapping, Aquifer Management, and the File Design Problem. Applications that combine the use of heuristics and special operators to solve problems in the areas of combinatorial optimization, grouping, and multi-objective optimization. We conclude by presenting the advantages and disadvantages of the algorithm and describing avenues for future investigation to answer other questions raised by this study.
Feature extraction from multiple data sources using genetic programming.
Szymanski, J. J.; Brumby, Steven P.; Pope, P. A.; Eads, D. R.; Galassi, M. C.; Harvey, N. R.; Perkins, S. J.; Porter, R. B.; Theiler, J. P.; Young, A. C.; Bloch, J. J.; David, N. A.; Esch-Mosher, D. M.
2002-01-01
Feature extration from imagery is an important and long-standing problem in remote sensing. In this paper, we report on work using genetic programming to perform feature extraction simultaneously from multispectral and digital elevation model (DEM) data. The tool used is the GENetic Imagery Exploitation (GENIE) software, which produces image-processing software that inherently combines spatial and spectral processing. GENIE is particularly useful in exploratory studies of imagery, such as one often does in combining data from multiple sources. The user trains the software by painting the feature of interest with a simple graphical user interface. GENIE then uses genetic programming techniques to produce an image-processing pipeline. Here, we demonstrate evolution of image processing algorithms that extract a range of land-cover features including towns, grasslands, wild fire burn scars, and several types of forest. We use imagery from the DOE/NNSA Multispectral Thermal Imager (MTI) spacecraft, fused with USGS 1:24000 scale DEM data.
Genetic Algorithm (GA)-Based Inclinometer Layout Optimization.
Liang, Weijie; Zhang, Ping; Chen, Xianping; Cai, Miao; Yang, Daoguo
2015-04-17
This paper presents numerical simulation results of an airflow inclinometer with sensitivity studies and thermal optimization of the printed circuit board (PCB) layout for an airflow inclinometer based on a genetic algorithm (GA). Due to the working principle of the gas sensor, the changes of the ambient temperature may cause dramatic voltage drifts of sensors. Therefore, eliminating the influence of the external environment for the airflow is essential for the performance and reliability of an airflow inclinometer. In this paper, the mechanism of an airflow inclinometer and the influence of different ambient temperatures on the sensitivity of the inclinometer will be examined by the ANSYS-FLOTRAN CFD program. The results show that with changes of the ambient temperature on the sensing element, the sensitivity of the airflow inclinometer is inversely proportional to the ambient temperature and decreases when the ambient temperature increases. GA is used to optimize the PCB thermal layout of the inclinometer. The finite-element simulation method (ANSYS) is introduced to simulate and verify the results of our optimal thermal layout, and the results indicate that the optimal PCB layout greatly improves (by more than 50%) the sensitivity of the inclinometer. The study may be useful in the design of PCB layouts that are related to sensitivity improvement of gas sensors.
Genetic Algorithm (GA)-Based Inclinometer Layout Optimization
Liang, Weijie; Zhang, Ping; Chen, Xianping; Cai, Miao; Yang, Daoguo
2015-01-01
This paper presents numerical simulation results of an airflow inclinometer with sensitivity studies and thermal optimization of the printed circuit board (PCB) layout for an airflow inclinometer based on a genetic algorithm (GA). Due to the working principle of the gas sensor, the changes of the ambient temperature may cause dramatic voltage drifts of sensors. Therefore, eliminating the influence of the external environment for the airflow is essential for the performance and reliability of an airflow inclinometer. In this paper, the mechanism of an airflow inclinometer and the influence of different ambient temperatures on the sensitivity of the inclinometer will be examined by the ANSYS-FLOTRAN CFD program. The results show that with changes of the ambient temperature on the sensing element, the sensitivity of the airflow inclinometer is inversely proportional to the ambient temperature and decreases when the ambient temperature increases. GA is used to optimize the PCB thermal layout of the inclinometer. The finite-element simulation method (ANSYS) is introduced to simulate and verify the results of our optimal thermal layout, and the results indicate that the optimal PCB layout greatly improves (by more than 50%) the sensitivity of the inclinometer. The study may be useful in the design of PCB layouts that are related to sensitivity improvement of gas sensors. PMID:25897500
Applying Genetic Algorithms To Query Optimization in Document Retrieval.
ERIC Educational Resources Information Center
Horng, Jorng-Tzong; Yeh, Ching-Chang
2000-01-01
Proposes a novel approach to automatically retrieve keywords and then uses genetic algorithms to adapt the keyword weights. Discusses Chinese text retrieval, term frequency rating formulas, vector space models, bigrams, the PAT-tree structure for information retrieval, query vectors, and relevance feedback. (Author/LRW)
Crossover Improvement for the Genetic Algorithm in Information Retrieval.
ERIC Educational Resources Information Center
Vrajitoru, Dana
1998-01-01
In information retrieval (IR), the aim of genetic algorithms (GA) is to help a system to find, in a huge documents collection, a good reply to a query expressed by the user. Analysis of phenomena seen during the implementation of a GA for IR has led to a new crossover operation, which is introduced and compared to other learning methods.…
Constraining compartmental models using multiple voltage recordings and genetic algorithms.
Keren, Naomi; Peled, Noam; Korngreen, Alon
2005-12-01
Compartmental models with many nonlinearly and nonhomogeneous distributions of voltage-gated conductances are routinely used to investigate the physiology of complex neurons. However, the number of loosely constrained parameters makes manually constructing the desired model a daunting if not impossible task. Recently, progress has been made using automated parameter search methods, such as genetic algorithms (GAs). However, these methods have been applied to somatically recorded action potentials using relatively simple target functions. Using a genetic minimization algorithm and a reduced compartmental model based on a previously published model of layer 5 neocortical pyramidal neurons we compared the efficacy of five cost functions (based on the waveform of the membrane potential, the interspike interval, trajectory density, and their combinations) to constrain the model. When the model was constrained using somatic recordings only, a combined cost function was found to be the most effective. This combined cost function was then applied to investigate the contribution of dendritic and axonal recordings to the ability of the GA to constrain the model. The more recording locations from the dendrite and the axon that were added to the data set the better was the genetic minimization algorithm able to constrain the compartmental model. Based on these simulations we propose an experimental scheme that, in combination with a genetic minimization algorithm, may be used to constrain compartmental models of neurons.
USING GENETIC ALGORITHMS TO DESIGN ENVIRONMENTALLY FRIENDLY PROCESSES
Genetic algorithm calculations are applied to the design of chemical processes to achieve improvements in environmental and economic performance. By finding the set of Pareto (i.e., non-dominated) solutions one can see how different objectives, such as environmental and economic ...
Genetic algorithms in a distributed computing environment using PVM
Cronje, G.A.; Steeb, W.H.
1997-04-01
The Parallel Virtual Machine (PVM) is a software system that enables a collection of heterogeneous computer systems to be used as a coherent and flexible concurrent computation resource. We show that genetic algorithms can be implemented using a Parallel Virtual Machine and C++. Problems with constraints are also discussed.
A parallel genetic algorithm for the set partitioning problem
Levine, D.
1996-12-31
This paper describes a parallel genetic algorithm developed for the solution of the set partitioning problem- a difficult combinatorial optimization problem used by many airlines as a mathematical model for flight crew scheduling. The genetic algorithm is based on an island model where multiple independent subpopulations each run a steady-state genetic algorithm on their own subpopulation and occasionally fit strings migrate between the subpopulations. Tests on forty real-world set partitioning problems were carried out on up to 128 nodes of an IBM SP1 parallel computer. We found that performance, as measured by the quality of the solution found and the iteration on which it was found, improved as additional subpopulations were added to the computation. With larger numbers of subpopulations the genetic algorithm was regularly able to find the optimal solution to problems having up to a few thousand integer variables. In two cases, high- quality integer feasible solutions were found for problems with 36, 699 and 43,749 integer variables, respectively. A notable limitation we found was the difficulty solving problems with many constraints.
Experiences with the PGAPack Parallel Genetic Algorithm library
Levine, D.; Hallstrom, P.; Noelle, D.; Walenz, B.
1997-07-01
PGAPack is the first widely distributed parallel genetic algorithm library. Since its release, several thousand copies have been distributed worldwide to interested users. In this paper we discuss the key components of the PGAPack design philosophy and present a number of application examples that use PGAPack.
Use of a novel Hill-climbing genetic algorithm in protein folding simulations.
Cooper, Lee R; Corne, David W; Crabbe, M James C
2003-12-01
We have developed a novel Hill-climbing genetic algorithm (GA) for simulation of protein folding. The program (written in C) builds a set of Cartesian points to represent an unfolded polypeptide's backbone. The dihedral angles determining the chain's configuration are stored in an array of chromosome structures that is copied and then mutated. The fitness of the mutated chain's configuration is determined by its radius of gyration. A four-helix bundle was used to optimise simulation conditions, and the program was compared with other, larger, genetic algorithms on a variety of structures. The program ran 50% faster than other GA programs. Overall, tests on 100 non-redundant structures gave comparable results to other genetic algorithms, with the Hill-climbing program running from between 20 and 50% faster. Examples including crambin, cytochrome c, cytochrome B and hemerythrin gave good secondary structure fits with overall alpha carbon atom rms deviations of between 5 and 5.6 A with an optimised hydrophobic term in the fitness function.
AI-BL1.0: a program for automatic on-line beamline optimization using the evolutionary algorithm.
Xi, Shibo; Borgna, Lucas Santiago; Zheng, Lirong; Du, Yonghua; Hu, Tiandou
2017-01-01
In this report, AI-BL1.0, an open-source Labview-based program for automatic on-line beamline optimization, is presented. The optimization algorithms used in the program are Genetic Algorithm and Differential Evolution. Efficiency was improved by use of a strategy known as Observer Mode for Evolutionary Algorithm. The program was constructed and validated at the XAFCA beamline of the Singapore Synchrotron Light Source and 1W1B beamline of the Beijing Synchrotron Radiation Facility.
Uplink Scheduling of Navigation Constellation Based on Immune Genetic Algorithm
Tang, Yinyin; Wang, Yueke; Chen, Jianyun; Li, Xianbin
2016-01-01
The uplink of navigation data as satellite ephemeris is a complex satellite range scheduling problem. Large–scale optimal problems cannot be tackled using traditional heuristic methods, and the efficiency of standard genetic algorithm is unsatisfactory. We propose a multi-objective immune genetic algorithm (IGA) for uplink scheduling of navigation constellation. The method focuses on balance traffic and maximum task objects based on satellite-ground index encoding method, individual diversity evaluation and memory library. Numerical results show that the multi–hierarchical encoding method can improve the computation efficiency, the fuzzy deviation toleration method can speed up convergence, and the method can achieve the balance target with a negligible loss in task number (approximately 2.98%). The proposed algorithm is a general method and thus can be used in similar problems. PMID:27736986
A biased random-key genetic algorithm for data clustering.
Festa, P
2013-09-01
Cluster analysis aims at finding subsets (clusters) of a given set of entities, which are homogeneous and/or well separated. Starting from the 1990s, cluster analysis has been applied to several domains with numerous applications. It has emerged as one of the most exciting interdisciplinary fields, having benefited from concepts and theoretical results obtained by different scientific research communities, including genetics, biology, biochemistry, mathematics, and computer science. The last decade has brought several new algorithms, which are able to solve larger sized and real-world instances. We will give an overview of the main types of clustering and criteria for homogeneity or separation. Solution techniques are discussed, with special emphasis on the combinatorial optimization perspective, with the goal of providing conceptual insights and literature references to the broad community of clustering practitioners. A new biased random-key genetic algorithm is also described and compared with several efficient hybrid GRASP algorithms recently proposed to cluster biological data.
Study of genetic direct search algorithms for function optimization
NASA Technical Reports Server (NTRS)
Zeigler, B. P.
1974-01-01
The results are presented of a study to determine the performance of genetic direct search algorithms in solving function optimization problems arising in the optimal and adaptive control areas. The findings indicate that: (1) genetic algorithms can outperform standard algorithms in multimodal and/or noisy optimization situations, but suffer from lack of gradient exploitation facilities when gradient information can be utilized to guide the search. (2) For large populations, or low dimensional function spaces, mutation is a sufficient operator. However for small populations or high dimensional functions, crossover applied in about equal frequency with mutation is an optimum combination. (3) Complexity, in terms of storage space and running time, is significantly increased when population size is increased or the inversion operator, or the second level adaptation routine is added to the basic structure.
An Adaptive Immune Genetic Algorithm for Edge Detection
NASA Astrophysics Data System (ADS)
Li, Ying; Bai, Bendu; Zhang, Yanning
An adaptive immune genetic algorithm (AIGA) based on cost minimization technique method for edge detection is proposed. The proposed AIGA recommends the use of adaptive probabilities of crossover, mutation and immune operation, and a geometric annealing schedule in immune operator to realize the twin goals of maintaining diversity in the population and sustaining the fast convergence rate in solving the complex problems such as edge detection. Furthermore, AIGA can effectively exploit some prior knowledge and information of the local edge structure in the edge image to make vaccines, which results in much better local search ability of AIGA than that of the canonical genetic algorithm. Experimental results on gray-scale images show the proposed algorithm perform well in terms of quality of the final edge image, rate of convergence and robustness to noise.
Uplink Scheduling of Navigation Constellation Based on Immune Genetic Algorithm.
Tang, Yinyin; Wang, Yueke; Chen, Jianyun; Li, Xianbin
2016-01-01
The uplink of navigation data as satellite ephemeris is a complex satellite range scheduling problem. Large-scale optimal problems cannot be tackled using traditional heuristic methods, and the efficiency of standard genetic algorithm is unsatisfactory. We propose a multi-objective immune genetic algorithm (IGA) for uplink scheduling of navigation constellation. The method focuses on balance traffic and maximum task objects based on satellite-ground index encoding method, individual diversity evaluation and memory library. Numerical results show that the multi-hierarchical encoding method can improve the computation efficiency, the fuzzy deviation toleration method can speed up convergence, and the method can achieve the balance target with a negligible loss in task number (approximately 2.98%). The proposed algorithm is a general method and thus can be used in similar problems.
Efficient Improvement of Silage Additives by Using Genetic Algorithms
Davies, Zoe S.; Gilbert, Richard J.; Merry, Roger J.; Kell, Douglas B.; Theodorou, Michael K.; Griffith, Gareth W.
2000-01-01
The enormous variety of substances which may be added to forage in order to manipulate and improve the ensilage process presents an empirical, combinatorial optimization problem of great complexity. To investigate the utility of genetic algorithms for designing effective silage additive combinations, a series of small-scale proof of principle silage experiments were performed with fresh ryegrass. Having established that significant biochemical changes occur over an ensilage period as short as 2 days, we performed a series of experiments in which we used 50 silage additive combinations (prepared by using eight bacterial and other additives, each of which was added at six different levels, including zero [i.e., no additive]). The decrease in pH, the increase in lactate concentration, and the free amino acid concentration were measured after 2 days and used to calculate a “fitness” value that indicated the quality of the silage (compared to a control silage made without additives). This analysis also included a “cost” element to account for different total additive levels. In the initial experiment additive levels were selected randomly, but subsequently a genetic algorithm program was used to suggest new additive combinations based on the fitness values determined in the preceding experiments. The result was very efficient selection for silages in which large decreases in pH and high levels of lactate occurred along with low levels of free amino acids. During the series of five experiments, each of which comprised 50 treatments, there was a steady increase in the amount of lactate that accumulated; the best treatment combination was that used in the last experiment, which produced 4.6 times more lactate than the untreated silage. The additive combinations that were found to yield the highest fitness values in the final (fifth) experiment were assessed to determine a range of biochemical and microbiological quality parameters during full-term silage
Efficient improvement of silage additives by using genetic algorithms.
Davies, Z S; Gilbert, R J; Merry, R J; Kell, D B; Theodorou, M K; Griffith, G W
2000-04-01
The enormous variety of substances which may be added to forage in order to manipulate and improve the ensilage process presents an empirical, combinatorial optimization problem of great complexity. To investigate the utility of genetic algorithms for designing effective silage additive combinations, a series of small-scale proof of principle silage experiments were performed with fresh ryegrass. Having established that significant biochemical changes occur over an ensilage period as short as 2 days, we performed a series of experiments in which we used 50 silage additive combinations (prepared by using eight bacterial and other additives, each of which was added at six different levels, including zero [i.e. , no additive]). The decrease in pH, the increase in lactate concentration, and the free amino acid concentration were measured after 2 days and used to calculate a "fitness" value that indicated the quality of the silage (compared to a control silage made without additives). This analysis also included a "cost" element to account for different total additive levels. In the initial experiment additive levels were selected randomly, but subsequently a genetic algorithm program was used to suggest new additive combinations based on the fitness values determined in the preceding experiments. The result was very efficient selection for silages in which large decreases in pH and high levels of lactate occurred along with low levels of free amino acids. During the series of five experiments, each of which comprised 50 treatments, there was a steady increase in the amount of lactate that accumulated; the best treatment combination was that used in the last experiment, which produced 4.6 times more lactate than the untreated silage. The additive combinations that were found to yield the highest fitness values in the final (fifth) experiment were assessed to determine a range of biochemical and microbiological quality parameters during full-term silage fermentation. We
Memetic algorithms for the unconstrained binary quadratic programming problem.
Merz, Peter; Katayama, Kengo
2004-12-01
This paper presents a memetic algorithm, a highly effective evolutionary algorithm incorporating local search for solving the unconstrained binary quadratic programming problem (BQP). To justify the approach, a fitness landscape analysis is conducted experimentally for several instances of the BQP. The results of the analysis show that recombination-based variation operators are well suited for the evolutionary algorithms with local search. Therefore, the proposed approach includes--besides a highly effective randomized k-opt local search--a new variation operator that has been tailored specially for the application in the hybrid evolutionary framework. The operator is called innovative variation and is fundamentally different from traditional crossover operators, since new genetic material is included in the offspring which is not contained in one of the parents. The evolutionary heuristic is tested on 35 publicly available BQP instances, and it is shown experimentally that the algorithm is capable of finding best-known solutions to large BQPs in a short time and with a high frequency. In comparison to other approaches for the BQP, the approach appears to be much more effective, particularly for large instances of 1000 or 2500 binary variables.
JavaGenes and Condor: Cycle-Scavenging Genetic Algorithms
NASA Technical Reports Server (NTRS)
Globus, Al; Langhirt, Eric; Livny, Miron; Ramamurthy, Ravishankar; Soloman, Marvin; Traugott, Steve
2000-01-01
A genetic algorithm code, JavaGenes, was written in Java and used to evolve pharmaceutical drug molecules and digital circuits. JavaGenes was run under the Condor cycle-scavenging batch system managing 100-170 desktop SGI workstations. Genetic algorithms mimic biological evolution by evolving solutions to problems using crossover and mutation. While most genetic algorithms evolve strings or trees, JavaGenes evolves graphs representing (currently) molecules and circuits. Java was chosen as the implementation language because the genetic algorithm requires random splitting and recombining of graphs, a complex data structure manipulation with ample opportunities for memory leaks, loose pointers, out-of-bound indices, and other hard to find bugs. Java garbage-collection memory management, lack of pointer arithmetic, and array-bounds index checking prevents these bugs from occurring, substantially reducing development time. While a run-time performance penalty must be paid, the only unacceptable performance we encountered was using standard Java serialization to checkpoint and restart the code. This was fixed by a two-day implementation of custom checkpointing. JavaGenes is minimally integrated with Condor; in other words, JavaGenes must do its own checkpointing and I/O redirection. A prototype Java-aware version of Condor was developed using standard Java serialization for checkpointing. For the prototype to be useful, standard Java serialization must be significantly optimized. JavaGenes is approximately 8700 lines of code and a few thousand JavaGenes jobs have been run. Most jobs ran for a few days. Results include proof that genetic algorithms can evolve directed and undirected graphs, development of a novel crossover operator for graphs, a paper in the journal Nanotechnology, and another paper in preparation.
An enhanced algorithm for multiple sequence alignment of protein sequences using genetic algorithm
Kumar, Manish
2015-01-01
One of the most fundamental operations in biological sequence analysis is multiple sequence alignment (MSA). The basic of multiple sequence alignment problems is to determine the most biologically plausible alignments of protein or DNA sequences. In this paper, an alignment method using genetic algorithm for multiple sequence alignment has been proposed. Two different genetic operators mainly crossover and mutation were defined and implemented with the proposed method in order to know the population evolution and quality of the sequence aligned. The proposed method is assessed with protein benchmark dataset, e.g., BALIBASE, by comparing the obtained results to those obtained with other alignment algorithms, e.g., SAGA, RBT-GA, PRRP, HMMT, SB-PIMA, CLUSTALX, CLUSTAL W, DIALIGN and PILEUP8 etc. Experiments on a wide range of data have shown that the proposed algorithm is much better (it terms of score) than previously proposed algorithms in its ability to achieve high alignment quality. PMID:27065770
Evaluation of algorithms used to order markers on genetic maps.
Mollinari, M; Margarido, G R A; Vencovsky, R; Garcia, A A F
2009-12-01
When building genetic maps, it is necessary to choose from several marker ordering algorithms and criteria, and the choice is not always simple. In this study, we evaluate the efficiency of algorithms try (TRY), seriation (SER), rapid chain delineation (RCD), recombination counting and ordering (RECORD) and unidirectional growth (UG), as well as the criteria PARF (product of adjacent recombination fractions), SARF (sum of adjacent recombination fractions), SALOD (sum of adjacent LOD scores) and LHMC (likelihood through hidden Markov chains), used with the RIPPLE algorithm for error verification, in the construction of genetic linkage maps. A linkage map of a hypothetical diploid and monoecious plant species was simulated containing one linkage group and 21 markers with fixed distance of 3 cM between them. In all, 700 F(2) populations were randomly simulated with 100 and 400 individuals with different combinations of dominant and co-dominant markers, as well as 10 and 20% of missing data. The simulations showed that, in the presence of co-dominant markers only, any combination of algorithm and criteria may be used, even for a reduced population size. In the case of a smaller proportion of dominant markers, any of the algorithms and criteria (except SALOD) investigated may be used. In the presence of high proportions of dominant markers and smaller samples (around 100), the probability of repulsion linkage increases between them and, in this case, use of the algorithms TRY and SER associated to RIPPLE with criterion LHMC would provide better results.
Application of genetic algorithm to hexagon-based motion estimation.
Kung, Chih-Ming; Cheng, Wan-Shu; Jeng, Jyh-Horng
2014-01-01
With the improvement of science and technology, the development of the network, and the exploitation of the HDTV, the demands of audio and video become more and more important. Depending on the video coding technology would be the solution for achieving these requirements. Motion estimation, which removes the redundancy in video frames, plays an important role in the video coding. Therefore, many experts devote themselves to the issues. The existing fast algorithms rely on the assumption that the matching error decreases monotonically as the searched point moves closer to the global optimum. However, genetic algorithm is not fundamentally limited to this restriction. The character would help the proposed scheme to search the mean square error closer to the algorithm of full search than those fast algorithms. The aim of this paper is to propose a new technique which focuses on combing the hexagon-based search algorithm, which is faster than diamond search, and genetic algorithm. Experiments are performed to demonstrate the encoding speed and accuracy of hexagon-based search pattern method and proposed method.
A simple algorithm for optimization and model fitting: AGA (asexual genetic algorithm)
NASA Astrophysics Data System (ADS)
Cantó, J.; Curiel, S.; Martínez-Gómez, E.
2009-07-01
Context: Mathematical optimization can be used as a computational tool to obtain the optimal solution to a given problem in a systematic and efficient way. For example, in twice-differentiable functions and problems with no constraints, the optimization consists of finding the points where the gradient of the objective function is zero and using the Hessian matrix to classify the type of each point. Sometimes, however it is impossible to compute these derivatives and other type of techniques must be employed such as the steepest descent/ascent method and more sophisticated methods such as those based on the evolutionary algorithms. Aims: We present a simple algorithm based on the idea of genetic algorithms (GA) for optimization. We refer to this algorithm as AGA (asexual genetic algorithm) and apply it to two kinds of problems: the maximization of a function where classical methods fail and model fitting in astronomy. For the latter case, we minimize the chi-square function to estimate the parameters in two examples: the orbits of exoplanets by taking a set of radial velocity data, and the spectral energy distribution (SED) observed towards a YSO (Young Stellar Object). Methods: The algorithm AGA may also be called genetic, although it differs from standard genetic algorithms in two main aspects: a) the initial population is not encoded; and b) the new generations are constructed by asexual reproduction. Results: Applying our algorithm in optimizing some complicated functions, we find the global maxima within a few iterations. For model fitting to the orbits of exoplanets and the SED of a YSO, we estimate the parameters and their associated errors.
Distributed query plan generation using multiobjective genetic algorithm.
Panicker, Shina; Kumar, T V Vijay
2014-01-01
A distributed query processing strategy, which is a key performance determinant in accessing distributed databases, aims to minimize the total query processing cost. One way to achieve this is by generating efficient distributed query plans that involve fewer sites for processing a query. In the case of distributed relational databases, the number of possible query plans increases exponentially with respect to the number of relations accessed by the query and the number of sites where these relations reside. Consequently, computing optimal distributed query plans becomes a complex problem. This distributed query plan generation (DQPG) problem has already been addressed using single objective genetic algorithm, where the objective is to minimize the total query processing cost comprising the local processing cost (LPC) and the site-to-site communication cost (CC). In this paper, this DQPG problem is formulated and solved as a biobjective optimization problem with the two objectives being minimize total LPC and minimize total CC. These objectives are simultaneously optimized using a multiobjective genetic algorithm NSGA-II. Experimental comparison of the proposed NSGA-II based DQPG algorithm with the single objective genetic algorithm shows that the former performs comparatively better and converges quickly towards optimal solutions for an observed crossover and mutation probability.
Strain gage selection in loads equations using a genetic algorithm
NASA Technical Reports Server (NTRS)
1994-01-01
Traditionally, structural loads are measured using strain gages. A loads calibration test must be done before loads can be accurately measured. In one measurement method, a series of point loads is applied to the structure, and loads equations are derived via the least squares curve fitting algorithm using the strain gage responses to the applied point loads. However, many research structures are highly instrumented with strain gages, and the number and selection of gages used in a loads equation can be problematic. This paper presents an improved technique using a genetic algorithm to choose the strain gages used in the loads equations. Also presented are a comparison of the genetic algorithm performance with the current T-value technique and a variant known as the Best Step-down technique. Examples are shown using aerospace vehicle wings of high and low aspect ratio. In addition, a significant limitation in the current methods is revealed. The genetic algorithm arrived at a comparable or superior set of gages with significantly less human effort, and could be applied in instances when the current methods could not.
A novel pipeline based FPGA implementation of a genetic algorithm
NASA Astrophysics Data System (ADS)
Thirer, Nonel
2014-05-01
To solve problems when an analytical solution is not available, more and more bio-inspired computation techniques have been applied in the last years. Thus, an efficient algorithm is the Genetic Algorithm (GA), which imitates the biological evolution process, finding the solution by the mechanism of "natural selection", where the strong has higher chances to survive. A genetic algorithm is an iterative procedure which operates on a population of individuals called "chromosomes" or "possible solutions" (usually represented by a binary code). GA performs several processes with the population individuals to produce a new population, like in the biological evolution. To provide a high speed solution, pipelined based FPGA hardware implementations are used, with a nstages pipeline for a n-phases genetic algorithm. The FPGA pipeline implementations are constraints by the different execution time of each stage and by the FPGA chip resources. To minimize these difficulties, we propose a bio-inspired technique to modify the crossover step by using non identical twins. Thus two of the chosen chromosomes (parents) will build up two new chromosomes (children) not only one as in classical GA. We analyze the contribution of this method to reduce the execution time in the asynchronous and synchronous pipelines and also the possibility to a cheaper FPGA implementation, by using smaller populations. The full hardware architecture for a FPGA implementation to our target ALTERA development card is presented and analyzed.
A genetic algorithm for layered multisource video distribution
NASA Astrophysics Data System (ADS)
Cheok, Lai-Tee; Eleftheriadis, Alexandros
2005-03-01
We propose a genetic algorithm -- MckpGen -- for rate scaling and adaptive streaming of layered video streams from multiple sources in a bandwidth-constrained environment. A genetic algorithm (GA) consists of several components: a representation scheme; a generator for creating an initial population; a crossover operator for producing offspring solutions from parents; a mutation operator to promote genetic diversity and a repair operator to ensure feasibility of solutions produced. We formulated the problem as a Multiple-Choice Knapsack Problem (MCKP), a variant of Knapsack Problem (KP) and a decision problem in combinatorial optimization. MCKP has many successful applications in fault tolerance, capital budgeting, resource allocation for conserving energy on mobile devices, etc. Genetic algorithms have been used to solve NP-complete problems effectively, such as the KP, however, to the best of our knowledge, there is no GA for MCKP. We utilize a binary chromosome representation scheme for MCKP and design and implement the components, utilizing problem-specific knowledge for solving MCKP. In addition, for the repair operator, we propose two schemes (RepairSimple and RepairBRP). Results show that RepairBRP yields significantly better performance. We further show that the average fitness of the entire population converges towards the best fitness (optimal) value and compare the performance at various bit-rates.
Scope of Gradient and Genetic Algorithms in Multivariable Function Optimization
NASA Technical Reports Server (NTRS)
Shaykhian, Gholam Ali; Sen, S. K.
2007-01-01
Global optimization of a multivariable function - constrained by bounds specified on each variable and also unconstrained - is an important problem with several real world applications. Deterministic methods such as the gradient algorithms as well as the randomized methods such as the genetic algorithms may be employed to solve these problems. In fact, there are optimization problems where a genetic algorithm/an evolutionary approach is preferable at least from the quality (accuracy) of the results point of view. From cost (complexity) point of view, both gradient and genetic approaches are usually polynomial-time; there are no serious differences in this regard, i.e., the computational complexity point of view. However, for certain types of problems, such as those with unacceptably erroneous numerical partial derivatives and those with physically amplified analytical partial derivatives whose numerical evaluation involves undesirable errors and/or is messy, a genetic (stochastic) approach should be a better choice. We have presented here the pros and cons of both the approaches so that the concerned reader/user can decide which approach is most suited for the problem at hand. Also for the function which is known in a tabular form, instead of an analytical form, as is often the case in an experimental environment, we attempt to provide an insight into the approaches focusing our attention toward accuracy. Such an insight will help one to decide which method, out of several available methods, should be employed to obtain the best (least error) output. *
Threshold matrix for digital halftoning by genetic algorithm optimization
NASA Astrophysics Data System (ADS)
Alander, Jarmo T.; Mantere, Timo J.; Pyylampi, Tero
1998-10-01
Digital halftoning is used both in low and high resolution high quality printing technologies. Our method is designed to be mainly used for low resolution ink jet marking machines to produce both gray tone and color images. The main problem with digital halftoning is pink noise caused by the human eye's visual transfer function. To compensate for this the random dot patterns used are optimized to contain more blue than pink noise. Several such dot pattern generator threshold matrices have been created automatically by using genetic algorithm optimization, a non-deterministic global optimization method imitating natural evolution and genetics. A hybrid of genetic algorithm with a search method based on local backtracking was developed together with several fitness functions evaluating dot patterns for rectangular grids. By modifying the fitness function, a family of dot generators results, each with its particular statistical features. Several versions of genetic algorithms, backtracking and fitness functions were tested to find a reasonable combination. The generated threshold matrices have been tested by simulating a set of test images using the Khoros image processing system. Even though the work was focused on developing low resolution marking technology, the resulting family of dot generators can be applied also in other halftoning application areas including high resolution printing technology.
Duan, Qian-Qian; Yang, Gen-Ke; Pan, Chang-Chun
2014-01-01
A hybrid optimization algorithm combining finite state method (FSM) and genetic algorithm (GA) is proposed to solve the crude oil scheduling problem. The FSM and GA are combined to take the advantage of each method and compensate deficiencies of individual methods. In the proposed algorithm, the finite state method makes up for the weakness of GA which is poor at local searching ability. The heuristic returned by the FSM can guide the GA algorithm towards good solutions. The idea behind this is that we can generate promising substructure or partial solution by using FSM. Furthermore, the FSM can guarantee that the entire solution space is uniformly covered. Therefore, the combination of the two algorithms has better global performance than the existing GA or FSM which is operated individually. Finally, a real-life crude oil scheduling problem from the literature is used for conducting simulation. The experimental results validate that the proposed method outperforms the state-of-art GA method. PMID:24772031
Duan, Qian-Qian; Yang, Gen-Ke; Pan, Chang-Chun
2014-01-01
A hybrid optimization algorithm combining finite state method (FSM) and genetic algorithm (GA) is proposed to solve the crude oil scheduling problem. The FSM and GA are combined to take the advantage of each method and compensate deficiencies of individual methods. In the proposed algorithm, the finite state method makes up for the weakness of GA which is poor at local searching ability. The heuristic returned by the FSM can guide the GA algorithm towards good solutions. The idea behind this is that we can generate promising substructure or partial solution by using FSM. Furthermore, the FSM can guarantee that the entire solution space is uniformly covered. Therefore, the combination of the two algorithms has better global performance than the existing GA or FSM which is operated individually. Finally, a real-life crude oil scheduling problem from the literature is used for conducting simulation. The experimental results validate that the proposed method outperforms the state-of-art GA method.
The genetic algorithm: A robust method for stress inversion
NASA Astrophysics Data System (ADS)
Thakur, Prithvi; Srivastava, Deepak C.; Gupta, Pravin K.
2017-01-01
The stress inversion of geological or geophysical observations is a nonlinear problem. In most existing methods, it is solved by linearization, under certain assumptions. These linear algorithms not only oversimplify the problem but also are vulnerable to entrapment of the solution in a local optimum. We propose the use of a nonlinear heuristic technique, the genetic algorithm, which searches the global optimum without making any linearizing assumption or simplification. The algorithm mimics the natural evolutionary processes of selection, crossover and mutation and, minimizes a composite misfit function for searching the global optimum, the fittest stress tensor. The validity and efficacy of the algorithm are demonstrated by a series of tests on synthetic and natural fault-slip observations in different tectonic settings and also in situations where the observations are noisy. It is shown that the genetic algorithm is superior to other commonly practised methods, in particular, in those tectonic settings where none of the principal stresses is directed vertically and/or the given data set is noisy.
Genetic algorithms and their use in Geophysical Problems
Parker, Paul B.
1999-04-01
Genetic algorithms (GAs), global optimization methods that mimic Darwinian evolution are well suited to the nonlinear inverse problems of geophysics. A standard genetic algorithm selects the best or ''fittest'' models from a ''population'' and then applies operators such as crossover and mutation in order to combine the most successful characteristics of each model and produce fitter models. More sophisticated operators have been developed, but the standard GA usually provides a robust and efficient search. Although the choice of parameter settings such as crossover and mutation rate may depend largely on the type of problem being solved, numerous results show that certain parameter settings produce optimal performance for a wide range of problems and difficulties. In particular, a low (about half of the inverse of the population size) mutation rate is crucial for optimal results, but the choice of crossover method and rate do not seem to affect performance appreciably. Optimal efficiency is usually achieved with smaller (< 50) populations. Lastly, tournament selection appears to be the best choice of selection methods due to its simplicity and its autoscaling properties. However, if a proportional selection method is used such as roulette wheel selection, fitness scaling is a necessity, and a high scaling factor (> 2.0) should be used for the best performance. Three case studies are presented in which genetic algorithms are used to invert for crustal parameters. The first is an inversion for basement depth at Yucca mountain using gravity data, the second an inversion for velocity structure in the crust of the south island of New Zealand using receiver functions derived from teleseismic events, and the third is a similar receiver function inversion for crustal velocities beneath the Mendocino Triple Junction region of Northern California. The inversions demonstrate that genetic algorithms are effective in solving problems with reasonably large numbers of free
A Study of Penalty Function Methods for Constraint Handling with Genetic Algorithm
NASA Technical Reports Server (NTRS)
Ortiz, Francisco
2004-01-01
COMETBOARDS (Comparative Evaluation Testbed of Optimization and Analysis Routines for Design of Structures) is a design optimization test bed that can evaluate the performance of several different optimization algorithms. A few of these optimization algorithms are the sequence of unconstrained minimization techniques (SUMT), sequential linear programming (SLP) and the sequential quadratic programming techniques (SQP). A genetic algorithm (GA) is a search technique that is based on the principles of natural selection or "survival of the fittest". Instead of using gradient information, the GA uses the objective function directly in the search. The GA searches the solution space by maintaining a population of potential solutions. Then, using evolving operations such as recombination, mutation and selection, the GA creates successive generations of solutions that will evolve and take on the positive characteristics of their parents and thus gradually approach optimal or near-optimal solutions. By using the objective function directly in the search, genetic algorithms can be effectively applied in non-convex, highly nonlinear, complex problems. The genetic algorithm is not guaranteed to find the global optimum, but it is less likely to get trapped at a local optimum than traditional gradient-based search methods when the objective function is not smooth and generally well behaved. The purpose of this research is to assist in the integration of genetic algorithm (GA) into COMETBOARDS. COMETBOARDS cast the design of structures as a constrained nonlinear optimization problem. One method used to solve constrained optimization problem with a GA to convert the constrained optimization problem into an unconstrained optimization problem by developing a penalty function that penalizes infeasible solutions. There have been several suggested penalty function in the literature each with there own strengths and weaknesses. A statistical analysis of some suggested penalty functions
Diagnosis support using Fuzzy Cognitive Maps combined with Genetic Algorithms.
Georgopoulos, Voula C; Stylios, Chrysotomos D
2009-01-01
A new hybrid modeling methodology to support medical diagnosis decisions is developed here. It extends previous work on Competitive Fuzzy Cognitive Maps for Medical Diagnosis Support Systems by complementing them with Genetic Algorithms Methods for concept interaction. The synergy of these methodologies is accomplished by a new proposed algorithm that leads to more dependable Advanced Medical Diagnosis Support Systems that are suitable to handle situations where the decisions are not clearly distinct. The technique developed here is applied successfully to model and test a differential diagnosis problem from the speech pathology area for the diagnosis of language impairments.
Multiple Magnetic Dipole Modeling Coupled with a Genetic Algorithm
NASA Astrophysics Data System (ADS)
Lientschnig, G.
2012-05-01
Magnetic field measurements of scientific spacecraft can be modelled successfully with the multiple magnetic dipole method. The existing GANEW software [1] uses a modified Gauss-Newton algorithm to find good magnetic dipole models. However, this deterministic approach relies on suitable guesses of the initial parameters which require a lot of expertise and time-consuming interaction of the user. Here, the use of probabilistic methods employing genetic algorithms is put forward. Stochastic methods like these are well- suited for providing good initial starting points for GANEW. Furthermore a computer software is reported upon that was successfully tested and used for a Cluster II satellite.
A Dedicated Genetic Algorithm for Localization of Moving Magnetic Objects
Alimi, Roger; Weiss, Eyal; Ram-Cohen, Tsuriel; Geron, Nir; Yogev, Idan
2015-01-01
A dedicated Genetic Algorithm (GA) has been developed to localize the trajectory of ferromagnetic moving objects within a bounded perimeter. Localization of moving ferromagnetic objects is an important tool because it can be employed in situations when the object is obscured. This work is innovative for two main reasons: first, the GA has been tuned to provide an accurate and fast solution to the inverse magnetic field equations problem. Second, the algorithm has been successfully tested using real-life experimental data. Very accurate trajectory localization estimations were obtained over a wide range of scenarios. PMID:26393598
Thermoluminescence curves simulation using genetic algorithm with factorial design
NASA Astrophysics Data System (ADS)
Popko, E. A.; Weinstein, I. A.
2016-05-01
The evolutionary approach is an effective optimization tool for numeric analysis of thermoluminescence (TL) processes to assess the microparameters of kinetic models and to determine its effects on the shape of TL peaks. In this paper, the procedure for tuning of genetic algorithm (GA) is presented. This approach is based on multifactorial experiment and allows choosing intrinsic mechanisms of evolutionary operators which provide the most efficient algorithm performance. The proposed method is tested by considering the “one trap-one recombination center” (OTOR) model as an example and advantages for approximation of experimental TL curves are shown.
Mass spectrometry cancer data classification using wavelets and genetic algorithm.
Nguyen, Thanh; Nahavandi, Saeid; Creighton, Douglas; Khosravi, Abbas
2015-12-21
This paper introduces a hybrid feature extraction method applied to mass spectrometry (MS) data for cancer classification. Haar wavelets are employed to transform MS data into orthogonal wavelet coefficients. The most prominent discriminant wavelets are then selected by genetic algorithm (GA) to form feature sets. The combination of wavelets and GA yields highly distinct feature sets that serve as inputs to classification algorithms. Experimental results show the robustness and significant dominance of the wavelet-GA against competitive methods. The proposed method therefore can be applied to cancer classification models that are useful as real clinical decision support systems for medical practitioners.
Modeling the Volcanic Source at Long Valley, CA, Using a Genetic Algorithm Technique
NASA Technical Reports Server (NTRS)
Tiampo, Kristy F.
1999-01-01
In this project, we attempted to model the deformation pattern due to the magmatic source at Long Valley caldera using a real-value coded genetic algorithm (GA) inversion similar to that found in Michalewicz, 1992. The project has been both successful and rewarding. The genetic algorithm, coded in the C programming language, performs stable inversions over repeated trials, with varying initial and boundary conditions. The original model used a GA in which the geophysical information was coded into the fitness function through the computation of surface displacements for a Mogi point source in an elastic half-space. The program was designed to invert for a spherical magmatic source - its depth, horizontal location and volume - using the known surface deformations. It also included the capability of inverting for multiple sources.
NASA Astrophysics Data System (ADS)
Windarto, Indratno, S. W.; Nuraini, N.; Soewono, E.
2014-02-01
Genetic algorithm is an optimization method based on the principles of genetics and natural selection in life organisms. The algorithm begins by defining the optimization variables, defining the cost function (in a minimization problem) or the fitness function (in a maximization problem) and selecting genetic algorithm parameters. The main procedures in genetic algorithm are generating initial population, selecting some chromosomes (individual) as parent's individual, mating, and mutation. In this paper, binary and continuous genetic algorithms were implemented to estimate growth rate and carrying capacity parameter from poultry data cited from literature. For simplicity, all genetic algorithm parameters (selection rate and mutation rate) are set to be constant along implementation of the algorithm. It was found that by selecting suitable mutation rate, both algorithms can estimate these parameters well. Suitable range for mutation rate in continuous genetic algorithm is wider than the binary one.
Some Randomized Algorithms for Convex Quadratic Programming
Goldbach, R.
1999-01-15
We adapt some randomized algorithms of Clarkson [3] for linear programming to the framework of so-called LP-type problems, which was introduced by Sharir and Welzl [10]. This framework is quite general and allows a unified and elegant presentation and analysis. We also show that LP-type problems include minimization of a convex quadratic function subject to convex quadratic constraints as a special case, for which the algorithms can be implemented efficiently, if only linear constraints are present. We show that the expected running times depend only linearly on the number of constraints, and illustrate this by some numerical results. Even though the framework of LP-type problems may appear rather abstract at first, application of the methods considered in this paper to a given problem of that type is easy and efficient. Moreover, our proofs are in fact rather simple, since many technical details of more explicit problem representations are handled in a uniform manner by our approach. In particular, we do not assume boundedness of the feasible set as required in related methods.
Genetic Algorithm for Initial Orbit Determination with Too Short Arc
NASA Astrophysics Data System (ADS)
Xin-ran, Li; Xin, Wang
2017-01-01
A huge quantity of too-short-arc (TSA) observational data have been obtained in sky surveys of space objects. However, reasonable results for the TSAs can hardly be obtained with the classical methods of initial orbit determination (IOD). In this paper, the IOD is reduced to a two-stage hierarchical optimization problem containing three variables for each stage. Using the genetic algorithm, a new method of the IOD for TSAs is established, through the selections of the optimized variables and the corresponding genetic operators for specific problems. Numerical experiments based on the real measurements show that the method can provide valid initial values for the follow-up work.
Sampling protein conformations using segment libraries and a genetic algorithm
NASA Astrophysics Data System (ADS)
Gunn, John R.
1997-03-01
We present a new simulation algorithm for minimizing empirical contact potentials for a simplified model of protein structure. The model consists of backbone atoms only (including Cβ) with the φ and ψ dihedral angles as the only degrees of freedom. In addition, φ and ψ are restricted to a finite set of 532 discrete pairs of values, and the secondary structural elements are held fixed in ideal geometries. The potential function consists of a look-up table based on discretized inter-residue atomic distances. The minimization consists of two principal elements: the use of preselected lists of trial moves and the use of a genetic algorithm. The trial moves consist of substitutions of one or two complete loop regions, and the lists are in turn built up using preselected lists of randomly-generated three-residue segments. The genetic algorithm consists of mutation steps (namely, the loop replacements), as well as a hybridization step in which new structures are created by combining parts of two "parents'' and a selection step in which hybrid structures are introduced into the population. These methods are combined into a Monte Carlo simulated annealing algorithm which has the overall structure of a random walk on a restricted set of preselected conformations. The algorithm is tested using two types of simple model potential. The first uses global information derived from the radius of gyration and the rms deviation to drive the folding, whereas the second is based exclusively on distance-geometry constraints. The hierarchical algorithm significantly outperforms conventional Monte Carlo simulation for a set of test proteins in both cases, with the greatest advantage being for the largest molecule having 193 residues. When tested on a realistic potential function, the method consistently generates structures ranked lower than the crystal structure. The results also show that the improved efficiency of the hierarchical algorithm exceeds that which would be anticipated
A Comparison of Genetic Programming Variants for Hyper-Heuristics
Harris, Sean
2015-03-01
Modern society is faced with ever more complex problems, many of which can be formulated as generate-and-test optimization problems. General-purpose optimization algorithms are not well suited for real-world scenarios where many instances of the same problem class need to be repeatedly and efficiently solved, such as routing vehicles over highways with constantly changing traffic flows, because they are not targeted to a particular scenario. Hyper-heuristics automate the design of algorithms to create a custom algorithm for a particular scenario. Hyper-heuristics typically employ Genetic Programming (GP) and this project has investigated the relationship between the choice of GP and performance in Hyper-heuristics. Results are presented demonstrating the existence of problems for which there is a statistically significant performance differential between the use of different types of GP.
Bruhn, Peter; Geyer-Schulz, Andreas
2002-01-01
In this paper, we introduce genetic programming over context-free languages with linear constraints for combinatorial optimization, apply this method to several variants of the multidimensional knapsack problem, and discuss its performance relative to Michalewicz's genetic algorithm with penalty functions. With respect to Michalewicz's approach, we demonstrate that genetic programming over context-free languages with linear constraints improves convergence. A final result is that genetic programming over context-free languages with linear constraints is ideally suited to modeling complementarities between items in a knapsack problem: The more complementarities in the problem, the stronger the performance in comparison to its competitors.
Rausch, Tobias; Thomas, Alun; Camp, Nicola J.; Cannon-Albright, Lisa A.; Facelli, Julio C.
2008-01-01
This paper describes a novel algorithm to analyze genetic linkage data using pattern recognition techniques and genetic algorithms (GA). The method allows a search for regions of the chromosome that may contain genetic variations that jointly predispose individuals for a particular disease. The method uses correlation analysis, filtering theory and genetic algorithms (GA) to achieve this goal. Because current genome scans use from hundreds to hundreds of thousands of markers, two versions of the method have been implemented. The first is an exhaustive analysis version that can be used to visualize, explore, and analyze small genetic data sets for two marker correlations; the second is a GA version, which uses a parallel implementation allowing searches of higher-order correlations in large data sets. Results on simulated data sets indicate that the method can be informative in the identification of major disease loci and gene-gene interactions in genome-wide linkage data and that further exploration of these techniques is justified. The results presented for both variants of the method show that it can help genetic epidemiologists to identify promising combinations of genetic factors that might predispose to complex disorders. In particular, the correlation analysis of IBD expression patterns might hint to possible gene-gene interactions and the filtering might be a fruitful approach to distinguish true correlation signals from noise. PMID:18547558
Genetic Algorithm Application in Optimization of Wireless Sensor Networks
Norouzi, Ali; Zaim, A. Halim
2014-01-01
There are several applications known for wireless sensor networks (WSN), and such variety demands improvement of the currently available protocols and the specific parameters. Some notable parameters are lifetime of network and energy consumption for routing which play key role in every application. Genetic algorithm is one of the nonlinear optimization methods and relatively better option thanks to its efficiency for large scale applications and that the final formula can be modified by operators. The present survey tries to exert a comprehensive improvement in all operational stages of a WSN including node placement, network coverage, clustering, and data aggregation and achieve an ideal set of parameters of routing and application based WSN. Using genetic algorithm and based on the results of simulations in NS, a specific fitness function was achieved, optimized, and customized for all the operational stages of WSNs. PMID:24693235
A sustainable genetic algorithm for satellite resource allocation
NASA Technical Reports Server (NTRS)
Abbott, R. J.; Campbell, M. L.; Krenz, W. C.
1995-01-01
A hybrid genetic algorithm is used to schedule tasks for 8 satellites, which can be modelled as a robot whose task is to retrieve objects from a two dimensional field. The objective is to find a schedule that maximizes the value of objects retrieved. Typical of the real-world tasks to which this corresponds is the scheduling of ground contacts for a communications satellite. An important feature of our application is that the amount of time available for running the scheduler is not necessarily known in advance. This requires that the scheduler produce reasonably good results after a short period but that it also continue to improve its results if allowed to run for a longer period. We satisfy this requirement by developing what we call a sustainable genetic algorithm.
Road detection in spaceborne SAR images using genetic algorithm
NASA Astrophysics Data System (ADS)
Jeon, Byoungki; Jang, JeongHun; Hong, KiSang
2000-08-01
This paper presents a technique for detection of roads in a spaceborne SAR image using a genetic algorithm. Roads in a spaceborne SAR image can be modelled as curvilinear structures with some thickness. Curve segments, which represent candidate positions of roads, are extracted from the image using a curvilinear structure detector, and roads are detected accurately by grouping those curve segments. For this purpose, we designed a grouping method based on a genetic algorithm (GA), which is one of the global optimization methods, combined perceptual grouping factors with it, and tried to reduce its overall computational cost by introducing an operation of thresholding and a concept of region growing. To detect roads more accurately, postprocessing, including noisy curve segment removal, is performed after grouping. We applied our method to ERS-1 SAR images that have a resolution of about 30 meters, and the experimental results show that our method can detect roads accurately, and is much faster than a globally applied GA approach.
Adaptive process control using fuzzy logic and genetic algorithms
NASA Technical Reports Server (NTRS)
Karr, C. L.
1993-01-01
Researchers at the U.S. Bureau of Mines have developed adaptive process control systems in which genetic algorithms (GA's) are used to augment fuzzy logic controllers (FLC's). GA's are search algorithms that rapidly locate near-optimum solutions to a wide spectrum of problems by modeling the search procedures of natural genetics. FLC's are rule based systems that efficiently manipulate a problem environment by modeling the 'rule-of-thumb' strategy used in human decision making. Together, GA's and FLC's possess the capabilities necessary to produce powerful, efficient, and robust adaptive control systems. To perform efficiently, such control systems require a control element to manipulate the problem environment, and a learning element to adjust to the changes in the problem environment. Details of an overall adaptive control system are discussed. A specific laboratory acid-base pH system is used to demonstrate the ideas presented.
Adaptive Process Control with Fuzzy Logic and Genetic Algorithms
NASA Technical Reports Server (NTRS)
Karr, C. L.
1993-01-01
Researchers at the U.S. Bureau of Mines have developed adaptive process control systems in which genetic algorithms (GA's) are used to augment fuzzy logic controllers (FLC's). GA's are search algorithms that rapidly locate near-optimum solutions to a wide spectrum of problems by modeling the search procedures of natural genetics. FLC's are rule based systems that efficiently manipulate a problem environment by modeling the 'rule-of-thumb' strategy used in human decision-making. Together, GA's and FLC's possess the capabilities necessary to produce powerful, efficient, and robust adaptive control systems. To perform efficiently, such control systems require a control element to manipulate the problem environment, an analysis element to recognize changes in the problem environment, and a learning element to adjust to the changes in the problem environment. Details of an overall adaptive control system are discussed. A specific laboratory acid-base pH system is used to demonstrate the ideas presented.
Optimum Actuator Selection with a Genetic Algorithm for Aircraft Control
NASA Technical Reports Server (NTRS)
Rogers, James L.
2004-01-01
The placement of actuators on a wing determines the control effectiveness of the airplane. One approach to placement maximizes the moments about the pitch, roll, and yaw axes, while minimizing the coupling. For example, the desired actuators produce a pure roll moment without at the same time causing much pitch or yaw. For a typical wing, there is a large set of candidate locations for placing actuators, resulting in a substantially larger number of combinations to examine in order to find an optimum placement satisfying the mission requirements and mission constraints. A genetic algorithm has been developed for finding the best placement for four actuators to produce an uncoupled pitch moment. The genetic algorithm has been extended to find the minimum number of actuators required to provide uncoupled pitch, roll, and yaw control. A simplified, untapered, unswept wing is the model for each application.
Structural health monitoring feature design by genetic programming
NASA Astrophysics Data System (ADS)
Harvey, Dustin Y.; Todd, Michael D.
2014-09-01
Structural health monitoring (SHM) systems provide real-time damage and performance information for civil, aerospace, and other high-capital or life-safety critical structures. Conventional data processing involves pre-processing and extraction of low-dimensional features from in situ time series measurements. The features are then input to a statistical pattern recognition algorithm to perform the relevant classification or regression task necessary to facilitate decisions by the SHM system. Traditional design of signal processing and feature extraction algorithms can be an expensive and time-consuming process requiring extensive system knowledge and domain expertise. Genetic programming, a heuristic program search method from evolutionary computation, was recently adapted by the authors to perform automated, data-driven design of signal processing and feature extraction algorithms for statistical pattern recognition applications. The proposed method, called Autofead, is particularly suitable to handle the challenges inherent in algorithm design for SHM problems where the manifestation of damage in structural response measurements is often unclear or unknown. Autofead mines a training database of response measurements to discover information-rich features specific to the problem at hand. This study provides experimental validation on three SHM applications including ultrasonic damage detection, bearing damage classification for rotating machinery, and vibration-based structural health monitoring. Performance comparisons with common feature choices for each problem area are provided demonstrating the versatility of Autofead to produce significant algorithm improvements on a wide range of problems.
OPTIMIZATION OF LONG RURAL FEEDERS USING A GENETIC ALGORITHM
Wishart, Michael; Ledwich, Gerard; Ghosh, Arindam; Ivanovich, Grujica
2010-06-15
This paper describes the optimization of conductor size and the voltage regulator location and magnitude of long rural distribution lines. The optimization minimizes the lifetime cost of the lines, including capital costs and losses while observing voltage drop and operational constraints using a Genetic Algorithm (GA). The GA optimization is applied to a real Single Wire Earth Return (SWER) network in regional Queensland and results are presented.
Investigation of range extension with a genetic algorithm
Austin, A. S., LLNL
1998-03-04
Range optimization is one of the tasks associated with the development of cost- effective, stand-off, air-to-surface munitions systems. The search for the optimal input parameters that will result in the maximum achievable range often employ conventional Monte Carlo techniques. Monte Carlo approaches can be time-consuming, costly, and insensitive to mutually dependent parameters and epistatic parameter effects. An alternative search and optimization technique is available in genetic algorithms. In the experiments discussed in this report, a simplified platform motion simulator was the fitness function for a genetic algorithm. The parameters to be optimized were the inputs to this motion generator and the simulator`s output (terminal range) was the fitness measure. The parameters of interest were initial launch altitude, initial launch speed, wing angle-of-attack, and engine ignition time. The parameter values the GA produced were validated by Monte Carlo investigations employing a full-scale six-degree-of-freedom (6 DOF) simulation. The best results produced by Monte Carlo processes using values based on the GA derived parameters were within - 1% of the ranges generated by the simplified model using the evolved parameter values. This report has five sections. Section 2 discusses the motivation for the range extension investigation and reviews the surrogate flight model developed as a fitness function for the genetic algorithm tool. Section 3 details the representation and implementation of the task within the genetic algorithm framework. Section 4 discusses the results. Section 5 concludes the report with a summary and suggestions for further research.
Identification of the Roessler system: algebraic approach and genetic algorithms
NASA Astrophysics Data System (ADS)
Ibanez, C. A.; Sanchez, J. H.; Suarez, M. S. C.; Flores, F. A.; Garrido, R. M.; Martinez, R. G.
2005-10-01
This article presents a method to determine the parameters of Rossler's attractor in a very approximated way, by means of observations of an available variable. It is shown that the system is observable and identifiable algebraically with respect to the chosen output. This fact allows to construct a differential parametrization of the output and its derivatives. Using this parametrization an identification scheme based on least mean squares is established and the solution is found with a genetic algorithm.
Supermultiplicative Speedups of Probabilistic Model-Building Genetic Algorithms
2009-02-01
simulations. We (Todd Martinez (2005 MacArthur fellow), Duanc Johnson, Kumara Sastry and David E. Goldberg) have applied inultiobjcctive GAs and model...AUTHOR(S) David E. Goldberg. Kumara Sastry. Martin Pelikan 5d. PROJECT NUMBER 5e. TASK NUMBER 5f. WORK UNIT NUMBER 7. PERFORMING ORGANIZATION NAME(S...Speedups of Probabilistic Model-Building Genetic Algorithms AFOSR Grant No. FA9550-06-1-0096 February 1, 2006 to November 30, 2008 David E. Goldberg
MAC Protocol for Ad Hoc Networks Using a Genetic Algorithm
Elizarraras, Omar; Panduro, Marco; Méndez, Aldo L.
2014-01-01
The problem of obtaining the transmission rate in an ad hoc network consists in adjusting the power of each node to ensure the signal to interference ratio (SIR) and the energy required to transmit from one node to another is obtained at the same time. Therefore, an optimal transmission rate for each node in a medium access control (MAC) protocol based on CSMA-CDMA (carrier sense multiple access-code division multiple access) for ad hoc networks can be obtained using evolutionary optimization. This work proposes a genetic algorithm for the transmission rate election considering a perfect power control, and our proposition achieves improvement of 10% compared with the scheme that handles the handshaking phase to adjust the transmission rate. Furthermore, this paper proposes a genetic algorithm that solves the problem of power combining, interference, data rate, and energy ensuring the signal to interference ratio in an ad hoc network. The result of the proposed genetic algorithm has a better performance (15%) compared to the CSMA-CDMA protocol without optimizing. Therefore, we show by simulation the effectiveness of the proposed protocol in terms of the throughput. PMID:25140339
Genetic Algorithm Optimizes Q-LAW Control Parameters
NASA Technical Reports Server (NTRS)
Lee, Seungwon; von Allmen, Paul; Petropoulos, Anastassios; Terrile, Richard
2008-01-01
A document discusses a multi-objective, genetic algorithm designed to optimize Lyapunov feedback control law (Q-law) parameters in order to efficiently find Pareto-optimal solutions for low-thrust trajectories for electronic propulsion systems. These would be propellant-optimal solutions for a given flight time, or flight time optimal solutions for a given propellant requirement. The approximate solutions are used as good initial solutions for high-fidelity optimization tools. When the good initial solutions are used, the high-fidelity optimization tools quickly converge to a locally optimal solution near the initial solution. Q-law control parameters are represented as real-valued genes in the genetic algorithm. The performances of the Q-law control parameters are evaluated in the multi-objective space (flight time vs. propellant mass) and sorted by the non-dominated sorting method that assigns a better fitness value to the solutions that are dominated by a fewer number of other solutions. With the ranking result, the genetic algorithm encourages the solutions with higher fitness values to participate in the reproduction process, improving the solutions in the evolution process. The population of solutions converges to the Pareto front that is permitted within the Q-law control parameter space.
A meta-learning system based on genetic algorithms
NASA Astrophysics Data System (ADS)
Pellerin, Eric; Pigeon, Luc; Delisle, Sylvain
2004-04-01
The design of an efficient machine learning process through self-adaptation is a great challenge. The goal of meta-learning is to build a self-adaptive learning system that is constantly adapting to its specific (and dynamic) environment. To that end, the meta-learning mechanism must improve its bias dynamically by updating the current learning strategy in accordance with its available experiences or meta-knowledge. We suggest using genetic algorithms as the basis of an adaptive system. In this work, we propose a meta-learning system based on a combination of the a priori and a posteriori concepts. A priori refers to input information and knowledge available at the beginning in order to built and evolve one or more sets of parameters by exploiting the context of the system"s information. The self-learning component is based on genetic algorithms and neural Darwinism. A posteriori refers to the implicit knowledge discovered by estimation of the future states of parameters and is also applied to the finding of optimal parameters values. The in-progress research presented here suggests a framework for the discovery of knowledge that can support human experts in their intelligence information assessment tasks. The conclusion presents avenues for further research in genetic algorithms and their capability to learn to learn.
Optimal recombination in genetic algorithms for flowshop scheduling problems
NASA Astrophysics Data System (ADS)
Kovalenko, Julia
2016-10-01
The optimal recombination problem consists in finding the best possible offspring as a result of a recombination operator in a genetic algorithm, given two parent solutions. We prove NP-hardness of the optimal recombination for various variants of the flowshop scheduling problem with makespan criterion and criterion of maximum lateness. An algorithm for solving the optimal recombination problem for permutation flowshop problems is built, using enumeration of prefect matchings in a special bipartite graph. The algorithm is adopted for the classical flowshop scheduling problem and for the no-wait flowshop problem. It is shown that the optimal recombination problem for the permutation flowshop scheduling problem is solvable in polynomial time for almost all pairs of parent solutions as the number of jobs tends to infinity.
Design of an acoustic metamaterial lens using genetic algorithms.
Li, Dennis; Zigoneanu, Lucian; Popa, Bogdan-Ioan; Cummer, Steven A
2012-10-01
The present work demonstrates a genetic algorithm approach to optimizing the effective material parameters of an acoustic metamaterial. The target device is an acoustic gradient index (GRIN) lens in air, which ideally possesses a maximized index of refraction, minimized frequency dependence of the material properties, and minimized acoustic impedance mismatch. Applying this algorithm results in complex designs with certain common features, and effective material properties that are better than those present in previous designs. After modifying the optimized unit cell designs to make them suitable for fabrication, a two-dimensional lens was built and experimentally tested. Its performance was in good agreement with simulations. Overall, the optimization approach was able to improve the refractive index but at the cost of increased frequency dependence. The optimal solutions found by the algorithm provide a numerical description of how the material parameters compete with one another and thus describes the level of performance achievable in the GRIN lens.
RCQ-GA: RDF Chain Query Optimization Using Genetic Algorithms
NASA Astrophysics Data System (ADS)
Hogenboom, Alexander; Milea, Viorel; Frasincar, Flavius; Kaymak, Uzay
The application of Semantic Web technologies in an Electronic Commerce environment implies a need for good support tools. Fast query engines are needed for efficient querying of large amounts of data, usually represented using RDF. We focus on optimizing a special class of SPARQL queries, the so-called RDF chain queries. For this purpose, we devise a genetic algorithm called RCQ-GA that determines the order in which joins need to be performed for an efficient evaluation of RDF chain queries. The approach is benchmarked against a two-phase optimization algorithm, previously proposed in literature. The more complex a query is, the more RCQ-GA outperforms the benchmark in solution quality, execution time needed, and consistency of solution quality. When the algorithms are constrained by a time limit, the overall performance of RCQ-GA compared to the benchmark further improves.
Comparing a Coevolutionary Genetic Algorithm for Multiobjective Optimization
NASA Technical Reports Server (NTRS)
Lohn, Jason D.; Kraus, William F.; Haith, Gary L.; Clancy, Daniel (Technical Monitor)
2002-01-01
We present results from a study comparing a recently developed coevolutionary genetic algorithm (CGA) against a set of evolutionary algorithms using a suite of multiobjective optimization benchmarks. The CGA embodies competitive coevolution and employs a simple, straightforward target population representation and fitness calculation based on developmental theory of learning. Because of these properties, setting up the additional population is trivial making implementation no more difficult than using a standard GA. Empirical results using a suite of two-objective test functions indicate that this CGA performs well at finding solutions on convex, nonconvex, discrete, and deceptive Pareto-optimal fronts, while giving respectable results on a nonuniform optimization. On a multimodal Pareto front, the CGA finds a solution that dominates solutions produced by eight other algorithms, yet the CGA has poor coverage across the Pareto front.
An Airborne Conflict Resolution Approach Using a Genetic Algorithm
NASA Technical Reports Server (NTRS)
Mondoloni, Stephane; Conway, Sheila
2001-01-01
An airborne conflict resolution approach is presented that is capable of providing flight plans forecast to be conflict-free with both area and traffic hazards. This approach is capable of meeting constraints on the flight plan such as required times of arrival (RTA) at a fix. The conflict resolution algorithm is based upon a genetic algorithm, and can thus seek conflict-free flight plans meeting broader flight planning objectives such as minimum time, fuel or total cost. The method has been applied to conflicts occurring 6 to 25 minutes in the future in climb, cruise and descent phases of flight. The conflict resolution approach separates the detection, trajectory generation and flight rules function from the resolution algorithm. The method is capable of supporting pilot-constructed resolutions, cooperative and non-cooperative maneuvers, and also providing conflict resolution on trajectories forecast by an onboard FMC.
An Adaptive Hybrid Genetic Algorithm for Improved Groundwater Remediation Design
NASA Astrophysics Data System (ADS)
Espinoza, F. P.; Minsker, B. S.; Goldberg, D. E.
2001-12-01
Identifying optimal designs for a groundwater remediation system is computationally intensive, especially for complex, nonlinear problems such as enhanced in situ bioremediation technology. To improve performance, we apply a hybrid genetic algorithm (HGA), which is a two-step solution method: a genetic algorithm (GA) for global search using the entire population and then a local search (LS) to improve search speed for only a few individuals in the population. We implement two types of HGAs: a non-adaptive HGA (NAHGA), whose operations are invariant throughout the run, and a self-adaptive HGA (SAHGA), whose operations adapt to the performance of the algorithm. The best settings of the two HGAs for optimal performance are then investigated for a groundwater remediation problem. The settings include the frequency of LS with respect to the normal GA evaluation, probability of individual selection for LS, evolution criterion for LS (Lamarckian or Baldwinian), and number of local search iterations. A comparison of the algorithms' performance under different settings will be presented.
High performance genetic algorithm for VLSI circuit partitioning
NASA Astrophysics Data System (ADS)
Dinu, Simona
2016-12-01
Partitioning is one of the biggest challenges in computer-aided design for VLSI circuits (very large-scale integrated circuits). This work address the min-cut balanced circuit partitioning problem- dividing the graph that models the circuit into almost equal sized k sub-graphs while minimizing the number of edges cut i.e. minimizing the number of edges connecting the sub-graphs. The problem may be formulated as a combinatorial optimization problem. Experimental studies in the literature have shown the problem to be NP-hard and thus it is important to design an efficient heuristic algorithm to solve it. The approach proposed in this study is a parallel implementation of a genetic algorithm, namely an island model. The information exchange between the evolving subpopulations is modeled using a fuzzy controller, which determines an optimal balance between exploration and exploitation of the solution space. The results of simulations show that the proposed algorithm outperforms the standard sequential genetic algorithm both in terms of solution quality and convergence speed. As a direction for future study, this research can be further extended to incorporate local search operators which should include problem-specific knowledge. In addition, the adaptive configuration of mutation and crossover rates is another guidance for future research.
Locomotive assignment problem with train precedence using genetic algorithm
NASA Astrophysics Data System (ADS)
Noori, Siamak; Ghannadpour, Seyed Farid
2012-07-01
This paper aims to study the locomotive assignment problem which is very important for railway companies, in view of high cost of operating locomotives. This problem is to determine the minimum cost assignment of homogeneous locomotives located in some central depots to a set of pre-scheduled trains in order to provide sufficient power to pull the trains from their origins to their destinations. These trains have different degrees of priority for servicing, and the high class of trains should be serviced earlier than others. This problem is modeled using vehicle routing and scheduling problem where trains representing the customers are supposed to be serviced in pre-specified hard/soft fuzzy time windows. A two-phase approach is used which, in the first phase, the multi-depot locomotive assignment is converted to a set of single depot problems, and after that, each single depot problem is solved heuristically by a hybrid genetic algorithm. In the genetic algorithm, various heuristics and efficient operators are used in the evolutionary search. The suggested algorithm is applied to solve the medium sized numerical example to check capabilities of the model and algorithm. Moreover, some of the results are compared with those solutions produced by branch-and-bound technique to determine validity and quality of the model. Results show that suggested approach is rather effective in respect of quality and time.
A Multi-Objective Genetic Algorithm for Outlier Removal.
Nahum, Oren E; Yosipof, Abraham; Senderowitz, Hanoch
2015-12-28
Quantitative structure activity relationship (QSAR) or quantitative structure property relationship (QSPR) models are developed to correlate activities for sets of compounds with their structure-derived descriptors by means of mathematical models. The presence of outliers, namely, compounds that differ in some respect from the rest of the data set, compromise the ability of statistical methods to derive QSAR models with good prediction statistics. Hence, outliers should be removed from data sets prior to model derivation. Here we present a new multi-objective genetic algorithm for the identification and removal of outliers based on the k nearest neighbors (kNN) method. The algorithm was used to remove outliers from three different data sets of pharmaceutical interest (logBBB, factor 7 inhibitors, and dihydrofolate reductase inhibitors), and its performances were compared with those of five other methods for outlier removal. The results suggest that the new algorithm provides filtered data sets that (1) better maintain the internal diversity of the parent data sets and (2) give rise to QSAR models with much better prediction statistics. Equally good filtered data sets in terms of these metrics were obtained when another objective function was added to the algorithm (termed "preservation"), forcing it to remove certain compounds with low probability only. This option is highly useful when specific compounds should be preferably kept in the final data set either because they have favorable activities or because they represent interesting molecular scaffolds. We expect this new algorithm to be useful in future QSAR applications.
Global structual optimizations of surface systems with a genetic algorithm
Chuang, Feng-Chuan
2005-01-01
Global structural optimizations with a genetic algorithm were performed for atomic cluster and surface systems including aluminum atomic clusters, Si magic clusters on the Si(111) 7 x 7 surface, silicon high-index surfaces, and Ag-induced Si(111) reconstructions. First, the global structural optimizations of neutral aluminum clusters Al_{n} algorithm in combination with tight-binding and first-principles calculations were performed to study the structures of magic clusters on the Si(111) 7 x 7 surface. Extensive calculations show that the magic cluster observed in scanning tunneling microscopy (STM) experiments consist of eight Si atoms. Simulated STM images of the Si magic cluster exhibit a ring-like feature similar to STM experiments. Third, a genetic algorithm coupled with a highly optimized empirical potential were used to determine the lowest energy structure of high-index semiconductor surfaces. The lowest energy structures of Si(105) and Si(114) were determined successfully. The results of Si(105) and Si(114) are reported within the framework of highly optimized empirical potential and first-principles calculations. Finally, a genetic algorithm coupled with Si and Ag tight-binding potentials were used to search for Ag-induced Si(111) reconstructions at various Ag and Si coverages. The optimized structural models of √3 x √3, 3 x 1, and 5 x 2 phases were reported using first-principles calculations. A novel model is found to have lower surface energy than the proposed double-honeycomb chained (DHC) model both for Au/Si(111) 5 x 2 and Ag/Si(111) 5 x 2 systems.
An implementation of continuous genetic algorithm in parameter estimation of predator-prey model
NASA Astrophysics Data System (ADS)
Windarto
2016-03-01
Genetic algorithm is an optimization method based on the principles of genetics and natural selection in life organisms. The main components of this algorithm are chromosomes population (individuals population), parent selection, crossover to produce new offspring, and random mutation. In this paper, continuous genetic algorithm was implemented to estimate parameters in a predator-prey model of Lotka-Volterra type. For simplicity, all genetic algorithm parameters (selection rate and mutation rate) are set to be constant along implementation of the algorithm. It was found that by selecting suitable mutation rate, the algorithms can estimate these parameters well.
Automatic Data Filter Customization Using a Genetic Algorithm
NASA Technical Reports Server (NTRS)
Mandrake, Lukas
2013-01-01
This work predicts whether a retrieval algorithm will usefully determine CO2 concentration from an input spectrum of GOSAT (Greenhouse Gases Observing Satellite). This was done to eliminate needless runtime on atmospheric soundings that would never yield useful results. A space of 50 dimensions was examined for predictive power on the final CO2 results. Retrieval algorithms are frequently expensive to run, and wasted effort defeats requirements and expends needless resources. This algorithm could be used to help predict and filter unneeded runs in any computationally expensive regime. Traditional methods such as the Fischer discriminant analysis and decision trees can attempt to predict whether a sounding will be properly processed. However, this work sought to detect a subsection of the dimensional space that can be simply filtered out to eliminate unwanted runs. LDAs (linear discriminant analyses) and other systems examine the entire data and judge a "best fit," giving equal weight to complex and problematic regions as well as simple, clear-cut regions. In this implementation, a genetic space of "left" and "right" thresholds outside of which all data are rejected was defined. These left/right pairs are created for each of the 50 input dimensions. A genetic algorithm then runs through countless potential filter settings using a JPL computer cluster, optimizing the tossed-out data s yield (proper vs. improper run removal) and number of points tossed. This solution is robust to an arbitrary decision boundary within the data and avoids the global optimization problem of whole-dataset fitting using LDA or decision trees. It filters out runs that would not have produced useful CO2 values to save needless computation. This would be an algorithmic preprocessing improvement to any computationally expensive system.
The mGA1.0: A common LISP implementation of a messy genetic algorithm
NASA Technical Reports Server (NTRS)
Goldberg, David E.; Kerzic, Travis
1990-01-01
Genetic algorithms (GAs) are finding increased application in difficult search, optimization, and machine learning problems in science and engineering. Increasing demands are being placed on algorithm performance, and the remaining challenges of genetic algorithm theory and practice are becoming increasingly unavoidable. Perhaps the most difficult of these challenges is the so-called linkage problem. Messy GAs were created to overcome the linkage problem of simple genetic algorithms by combining variable-length strings, gene expression, messy operators, and a nonhomogeneous phasing of evolutionary processing. Results on a number of difficult deceptive test functions are encouraging with the mGA always finding global optima in a polynomial number of function evaluations. Theoretical and empirical studies are continuing, and a first version of a messy GA is ready for testing by others. A Common LISP implementation called mGA1.0 is documented and related to the basic principles and operators developed by Goldberg et. al. (1989, 1990). Although the code was prepared with care, it is not a general-purpose code, only a research version. Important data structures and global variations are described. Thereafter brief function descriptions are given, and sample input data are presented together with sample program output. A source listing with comments is also included.
Optimization of Circular Ring Microstrip Antenna Using Genetic Algorithm
NASA Astrophysics Data System (ADS)
Sathi, V.; Ghobadi, Ch.; Nourinia, J.
2008-10-01
Circular ring microstrip antennas have several interesting properties that make it attractive in wireless applications. Although several analysis techniques such as cavity model, generalized transmission line model, Fourier-Hankel transform domain and the method of matched asymptotic expansion have been studied by researchers, there is no efficient design tool that has been incorporated with a suitable optimization algorithm. In this paper, the cavity model analysis along with the genetic optimization algorithm is presented for the design of circular ring microstrip antennas. The method studied here is based on the well-known cavity model and the optimization of the dimensions and feed point location of the circular ring antenna is performed via the genetic optimization algorithm, to achieve an acceptable antenna operation around a desired resonance frequency. The antennas designed by this efficient design procedure were realized experimentally, and the results are compared. In addition, these results are also compared to the results obtained by the commercial electromagnetic simulation tool, the FEM based software, HFSS by ANSOFT.
Design of OFDM radar pulses using genetic algorithm based techniques
NASA Astrophysics Data System (ADS)
Lellouch, Gabriel; Mishra, Amit Kumar; Inggs, Michael
2016-08-01
The merit of evolutionary algorithms (EA) to solve convex optimization problems is widely acknowledged. In this paper, a genetic algorithm (GA) optimization based waveform design framework is used to improve the features of radar pulses relying on the orthogonal frequency division multiplexing (OFDM) structure. Our optimization techniques focus on finding optimal phase code sequences for the OFDM signal. Several optimality criteria are used since we consider two different radar processing solutions which call either for single or multiple-objective optimizations. When minimization of the so-called peak-to-mean envelope power ratio (PMEPR) single-objective is tackled, we compare our findings with existing methods and emphasize on the merit of our approach. In the scope of the two-objective optimization, we first address PMEPR and peak-to-sidelobe level ratio (PSLR) and show that our approach based on the non-dominated sorting genetic algorithm-II (NSGA-II) provides design solutions with noticeable improvements as opposed to random sets of phase codes. We then look at another case of interest where the objective functions are two measures of the sidelobe level, namely PSLR and the integrated-sidelobe level ratio (ISLR) and propose to modify the NSGA-II to include a constrain on the PMEPR instead. In the last part, we illustrate via a case study how our encoding solution makes it possible to minimize the single objective PMEPR while enabling a target detection enhancement strategy, when the SNR metric would be chosen for the detection framework.
Rabow, A A; Scheraga, H A
1996-09-01
We have devised a Cartesian combination operator and coding scheme for improving the performance of genetic algorithms applied to the protein folding problem. The genetic coding consists of the C alpha Cartesian coordinates of the protein chain. The recombination of the genes of the parents is accomplished by: (1) a rigid superposition of one parent chain on the other, to make the relation of Cartesian coordinates meaningful, then, (2) the chains of the children are formed through a linear combination of the coordinates of their parents. The children produced with this Cartesian combination operator scheme have similar topology and retain the long-range contacts of their parents. The new scheme is significantly more efficient than the standard genetic algorithm methods for locating low-energy conformations of proteins. The considerable superiority of genetic algorithms over Monte Carlo optimization methods is also demonstrated. We have also devised a new dynamic programming lattice fitting procedure for use with the Cartesian combination operator method. The procedure finds excellent fits of real-space chains to the lattice while satisfying bond-length, bond-angle, and overlap constraints.
NASA Technical Reports Server (NTRS)
Kobayashi, Takahisa; Simon, Donald L.
2002-01-01
As part of the NASA Aviation Safety Program, a unique model-based diagnostics method that employs neural networks and genetic algorithms for aircraft engine performance diagnostics has been developed and demonstrated at the NASA Glenn Research Center against a nonlinear gas turbine engine model. Neural networks are applied to estimate the internal health condition of the engine, and genetic algorithms are used for sensor fault detection, isolation, and quantification. This hybrid architecture combines the excellent nonlinear estimation capabilities of neural networks with the capability to rank the likelihood of various faults given a specific sensor suite signature. The method requires a significantly smaller data training set than a neural network approach alone does, and it performs the combined engine health monitoring objectives of performance diagnostics and sensor fault detection and isolation in the presence of nominal and degraded engine health conditions.
Ebtehaj, Isa; Bonakdari, Hossein
2014-01-01
The existence of sediments in wastewater greatly affects the performance of the sewer and wastewater transmission systems. Increased sedimentation in wastewater collection systems causes problems such as reduced transmission capacity and early combined sewer overflow. The article reviews the performance of the genetic algorithm (GA) and imperialist competitive algorithm (ICA) in minimizing the target function (mean square error of observed and predicted Froude number). To study the impact of bed load transport parameters, using four non-dimensional groups, six different models have been presented. Moreover, the roulette wheel selection method is used to select the parents. The ICA with root mean square error (RMSE) = 0.007, mean absolute percentage error (MAPE) = 3.5% show better results than GA (RMSE = 0.007, MAPE = 5.6%) for the selected model. All six models return better results than the GA. Also, the results of these two algorithms were compared with multi-layer perceptron and existing equations.
Application of genetic algorithms to tuning fuzzy control systems
NASA Technical Reports Server (NTRS)
Espy, Todd; Vombrack, Endre; Aldridge, Jack
1993-01-01
Real number genetic algorithms (GA) were applied for tuning fuzzy membership functions of three controller applications. The first application is our 'Fuzzy Pong' demonstration, a controller that controls a very responsive system. The performance of the automatically tuned membership functions exceeded that of manually tuned membership functions both when the algorithm started with randomly generated functions and with the best manually-tuned functions. The second GA tunes input membership functions to achieve a specified control surface. The third application is a practical one, a motor controller for a printed circuit manufacturing system. The GA alters the positions and overlaps of the membership functions to accomplish the tuning. The applications, the real number GA approach, the fitness function and population parameters, and the performance improvements achieved are discussed. Directions for further research in tuning input and output membership functions and in tuning fuzzy rules are described.
A genetic algorithm based method for docking flexible molecules
Judson, R.S.; Jaeger, E.P.; Treasurywala, A.M.
1993-11-01
The authors describe a computational method for docking flexible molecules into protein binding sites. The method uses a genetic algorithm (GA) to search the combined conformation/orientation space of the molecule to find low energy conformation. Several techniques are described that increase the efficiency of the basic search method. These include the use of several interacting GA subpopulations or niches; the use of a growing algorithm that initially docks only a small part of the molecule; and the use of gradient minimization during the search. To illustrate the method, they dock Cbz-GlyP-Leu-Leu (ZGLL) into thermolysin. This system was chosen because a well refined crystal structure is available and because another docking method had previously been tested on this system. Their method is able to find conformations that lie physically close to and in some cases lower in energy than the crystal conformation in reasonable periods of time on readily available hardware.
Genetic algorithm for multiple bus line coordination on urban arterial.
Yang, Zhen; Wang, Wei; Chen, Shuyan; Ding, Haoyang; Li, Xiaowei
2015-01-01
Bus travel time on road section is defined and analyzed with the effect of multiple bus lines. An analytical model is formulated to calculate the total red time a bus encounters when travelling along the arterial. Genetic algorithm is used to optimize the offset scheme of traffic signals to minimize the total red time that all bus lines encounter in two directions of the arterial. The model and algorithm are applied to the major part of Zhongshan North Street in the city of Nanjing. The results show that the methods in this paper can reduce total red time of all the bus lines by 31.9% on the object arterial and thus improve the traffic efficiency of the whole arterial and promote public transport priority.
An island grouping genetic algorithm for fuzzy partitioning problems.
Salcedo-Sanz, S; Del Ser, J; Geem, Z W
2014-01-01
This paper presents a novel fuzzy clustering technique based on grouping genetic algorithms (GGAs), which are a class of evolutionary algorithms especially modified to tackle grouping problems. Our approach hinges on a GGA devised for fuzzy clustering by means of a novel encoding of individuals (containing elements and clusters sections), a new fitness function (a superior modification of the Davies Bouldin index), specially tailored crossover and mutation operators, and the use of a scheme based on a local search and a parallelization process, inspired from an island-based model of evolution. The overall performance of our approach has been assessed over a number of synthetic and real fuzzy clustering problems with different objective functions and distance measures, from which it is concluded that the proposed approach shows excellent performance in all cases.
van der Lee, J H; Svrcek, W Y; Young, B R
2008-01-01
Model Predictive Control is a valuable tool for the process control engineer in a wide variety of applications. Because of this the structure of an MPC can vary dramatically from application to application. There have been a number of works dedicated to MPC tuning for specific cases. Since MPCs can differ significantly, this means that these tuning methods become inapplicable and a trial and error tuning approach must be used. This can be quite time consuming and can result in non-optimum tuning. In an attempt to resolve this, a generalized automated tuning algorithm for MPCs was developed. This approach is numerically based and combines a genetic algorithm with multi-objective fuzzy decision-making. The key advantages to this approach are that genetic algorithms are not problem specific and only need to be adapted to account for the number and ranges of tuning parameters for a given MPC. As well, multi-objective fuzzy decision-making can handle qualitative statements of what optimum control is, in addition to being able to use multiple inputs to determine tuning parameters that best match the desired results. This is particularly useful for multi-input, multi-output (MIMO) cases where the definition of "optimum" control is subject to the opinion of the control engineer tuning the system. A case study will be presented in order to illustrate the use of the tuning algorithm. This will include how different definitions of "optimum" control can arise, and how they are accounted for in the multi-objective decision making algorithm. The resulting tuning parameters from each of the definition sets will be compared, and in doing so show that the tuning parameters vary in order to meet each definition of optimum control, thus showing the generalized automated tuning algorithm approach for tuning MPCs is feasible.
Transitioning from Targeted to Comprehensive Mass Spectrometry Using Genetic Algorithms
NASA Astrophysics Data System (ADS)
Jaffe, Jacob D.; Feeney, Caitlin M.; Patel, Jinal; Lu, Xiaodong; Mani, D. R.
2016-11-01
Targeted proteomic assays are becoming increasingly popular because of their robust quantitative applications enabled by internal standardization, and they can be routinely executed on high performance mass spectrometry instrumentation. However, these assays are typically limited to 100s of analytes per experiment. Considerable time and effort are often expended in obtaining and preparing samples prior to targeted analyses. It would be highly desirable to detect and quantify 1000s of analytes in such samples using comprehensive mass spectrometry techniques (e.g., SWATH and DIA) while retaining a high degree of quantitative rigor for analytes with matched internal standards. Experimentally, it is facile to port a targeted assay to a comprehensive data acquisition technique. However, data analysis challenges arise from this strategy concerning agreement of results from the targeted and comprehensive approaches. Here, we present the use of genetic algorithms to overcome these challenges in order to configure hybrid targeted/comprehensive MS assays. The genetic algorithms are used to select precursor-to-fragment transitions that maximize the agreement in quantification between the targeted and the comprehensive methods. We find that the algorithm we used provided across-the-board improvement in the quantitative agreement between the targeted assay data and the hybrid comprehensive/targeted assay that we developed, as measured by parameters of linear models fitted to the results. We also found that the algorithm could perform at least as well as an independently-trained mass spectrometrist in accomplishing this task. We hope that this approach will be a useful tool in the development of quantitative approaches for comprehensive proteomics techniques.
Optimisation of assembly scheduling in VCIM systems using genetic algorithm
NASA Astrophysics Data System (ADS)
Dao, Son Duy; Abhary, Kazem; Marian, Romeo
2017-01-01
Assembly plays an important role in any production system as it constitutes a significant portion of the lead time and cost of a product. Virtual computer-integrated manufacturing (VCIM) system is a modern production system being conceptually developed to extend the application of traditional computer-integrated manufacturing (CIM) system to global level. Assembly scheduling in VCIM systems is quite different from one in traditional production systems because of the difference in the working principles of the two systems. In this article, the assembly scheduling problem in VCIM systems is modeled and then an integrated approach based on genetic algorithm (GA) is proposed to search for a global optimised solution to the problem. Because of dynamic nature of the scheduling problem, a novel GA with unique chromosome representation and modified genetic operations is developed herein. Robustness of the proposed approach is verified by a numerical example.
Random search optimization based on genetic algorithm and discriminant function
NASA Technical Reports Server (NTRS)
Kiciman, M. O.; Akgul, M.; Erarslanoglu, G.
1990-01-01
The general problem of optimization with arbitrary merit and constraint functions, which could be convex, concave, monotonic, or non-monotonic, is treated using stochastic methods. To improve the efficiency of the random search methods, a genetic algorithm for the search phase and a discriminant function for the constraint-control phase were utilized. The validity of the technique is demonstrated by comparing the results to published test problem results. Numerical experimentation indicated that for cases where a quick near optimum solution is desired, a general, user-friendly optimization code can be developed without serious penalties in both total computer time and accuracy.
Multi-objective Optimization on Helium Liquefier Using Genetic Algorithm
NASA Astrophysics Data System (ADS)
Wang, H. R.; Xiong, L. Y.; Peng, N.; Meng, Y. R.; Liu, L. Q.
2017-02-01
Research on optimization of helium liquefier is limited at home and abroad, and most of the optimization is single-objective based on Collins cycle. In this paper, a multi-objective optimization is conducted using genetic algorithm (GA) on the 40 L/h helium liquefier developed by Technical Institute of Physics and Chemistry of the Chinese Academy of Science (TIPC, CAS), steady solutions are obtained in the end. In addition, the exergy loss of the optimized system is studied in the case of with and without liquid nitrogen pre-cooling. The results have guiding significance for the future design of large helium liquefier.
Application of genetic algorithms in nonlinear heat conduction problems.
Kadri, Muhammad Bilal; Khan, Waqar A
2014-01-01
Genetic algorithms are employed to optimize dimensionless temperature in nonlinear heat conduction problems. Three common geometries are selected for the analysis and the concept of minimum entropy generation is used to determine the optimum temperatures under the same constraints. The thermal conductivity is assumed to vary linearly with temperature while internal heat generation is assumed to be uniform. The dimensionless governing equations are obtained for each selected geometry and the dimensionless temperature distributions are obtained using MATLAB. It is observed that GA gives the minimum dimensionless temperature in each selected geometry.
Multidisciplinary Optimization of Airborne Radome Using Genetic Algorithm
NASA Astrophysics Data System (ADS)
Tang, Xinggang; Zhang, Weihong; Zhu, Jihong
A multidisciplinary optimization scheme of airborne radome is proposed. The optimization procedure takes into account the structural and the electromagnetic responses simultaneously. The structural analysis is performed with the finite element method using Patran/Nastran, while the electromagnetic analysis is carried out using the Plane Wave Spectrum and Surface Integration technique. The genetic algorithm is employed for the multidisciplinary optimization process. The thicknesses of multilayer radome wall are optimized to maximize the overall transmission coefficient of the antenna-radome system under the constraint of the structural failure criteria. The proposed scheme and the optimization approach are successfully assessed with an illustrative numerical example.
Genetic Algorithm based Decentralized PI Type Controller: Load Frequency Control
NASA Astrophysics Data System (ADS)
Dwivedi, Atul; Ray, Goshaidas; Sharma, Arun Kumar
2016-12-01
This work presents a design of decentralized PI type Linear Quadratic (LQ) controller based on genetic algorithm (GA). The proposed design technique allows considerable flexibility in defining the control objectives and it does not consider any knowledge of the system matrices and moreover it avoids the solution of algebraic Riccati equation. To illustrate the results of this work, a load-frequency control problem is considered. Simulation results reveal that the proposed scheme based on GA is an alternative and attractive approach to solve load-frequency control problem from both performance and design point of views.
Full design of fuzzy controllers using genetic algorithms
NASA Technical Reports Server (NTRS)
Homaifar, Abdollah; Mccormick, ED
1992-01-01
This paper examines the applicability of genetic algorithms (GA) in the complete design of fuzzy logic controllers. While GA has been used before in the development of rule sets or high performance membership functions, the interdependence between these two components dictates that they should be designed together simultaneously. GA is fully capable of creating complete fuzzy controllers given the equations of motion of the system, eliminating the need for human input in the design loop. We show the application of this new method to the development of a cart controller.
Genetic algorithms for dipole location of fetal magnetocardiography.
Escalona-Vargas, D; Murphy, P; Lowery, C L; Eswaran, H
2016-08-01
In this paper, we explore the use of Maximum Likelihood (ML) method with Genetic Algorithms (GA) as global optimization procedure for source reconstruction in fetal magnetocardiography (fMCG) data. A multiple equivalent current dipole (ECD) model was used for sources active in different time samples. Inverse solutions across time were obtained for a single-dipole approximation to estimate the trajectory of the dipole position. We compared the GA and SIMPLEX methods in a simulation environment under noise conditions. Methods are applied on a real fMCG data. Results show robust estimators of the cardiac sources when GA is used as optimization technique.
Optimization of broadband semiconductor chirped mirrors with genetic algorithm
NASA Astrophysics Data System (ADS)
Dems, Maciej; Wnuk, Paweł; Wasylczyk, Piotr; Zinkiewicz, Łukasz; Wójcik-Jedlińska, Anna; Regiński, Kazimierz; Hejduk, Krzysztof; Jasik, Agata
2016-10-01
Genetic algorithm was applied for optimization of dispersion properties in semiconductor Bragg reflectors for applications in femtosecond lasers. Broadband, large negative group-delay dispersion was achieved in the optimized design: The group-delay dispersion (GDD) as large as -3500 fs2 was theoretically obtained over a 10-nm bandwidth. The designed structure was manufactured and tested, providing GDD -3320 fs2 over a 7-nm bandwidth. The mirror performance was verified in semiconductor structures grown with molecular beam epitaxy. The mirror was tested in a passively mode-locked Yb:KYW laser.
Optimal brushless DC motor design using genetic algorithms
NASA Astrophysics Data System (ADS)
Rahideh, A.; Korakianitis, T.; Ruiz, P.; Keeble, T.; Rothman, M. T.
2010-11-01
This paper presents a method for the optimal design of a slotless permanent magnet brushless DC (BLDC) motor with surface mounted magnets using a genetic algorithm. Characteristics of the motor are expressed as functions of motor geometries. The objective function is a combination of losses, volume and cost to be minimized simultaneously. Electrical and mechanical requirements (i.e. voltage, torque and speed) and other limitations (e.g. upper and lower limits of the motor geometries) are cast into constraints of the optimization problem. One sample case is used to illustrate the design and optimization technique.
Simulating and Synthesizing Substructures Using Neural Network and Genetic Algorithms
NASA Technical Reports Server (NTRS)
Liu, Youhua; Kapania, Rakesh K.; VanLandingham, Hugh F.
1997-01-01
The feasibility of simulating and synthesizing substructures by computational neural network models is illustrated by investigating a statically indeterminate beam, using both a 1-D and a 2-D plane stress modelling. The beam can be decomposed into two cantilevers with free-end loads. By training neural networks to simulate the cantilever responses to different loads, the original beam problem can be solved as a match-up between two subsystems under compatible interface conditions. The genetic algorithms are successfully used to solve the match-up problem. Simulated results are found in good agreement with the analytical or FEM solutions.
Evaluation of Mechanical Losses in Piezoelectric Plates using Genetic algorithm
NASA Astrophysics Data System (ADS)
Arnold, F. J.; Gonçalves, M. S.; Massaro, F. R.; Martins, P. S.
Numerical methods are used for the characterization of piezoelectric ceramics. A procedure based on genetic algorithm is applied to find the physical coefficients and mechanical losses. The coefficients are estimated from a minimum scoring of cost function. Electric impedances are calculated from Mason's model including mechanical losses constant and dependent on frequency as a linear function. The results show that the electric impedance percentage error in the investigated interval of frequencies decreases when mechanical losses depending on frequency are inserted in the model. A more accurate characterization of the piezoelectric ceramics mechanical losses should be considered as frequency dependent.
Parameterization of interatomic potential by genetic algorithms: A case study
Ghosh, Partha S. Arya, A.; Dey, G. K.; Ranawat, Y. S.
2015-06-24
A framework for Genetic Algorithm based methodology is developed to systematically obtain and optimize parameters for interatomic force field functions for MD simulations by fitting to a reference data base. This methodology is applied to the fitting of ThO{sub 2} (CaF{sub 2} prototype) – a representative of ceramic based potential fuel for nuclear applications. The resulting GA optimized parameterization of ThO{sub 2} is able to capture basic structural, mechanical, thermo-physical properties and also describes defect structures within the permissible range.
[Genetic algorithm for fermentation kinetics of submerged fermentation by Morchella].
Wang, Ying; Piao, Meizi; Sun, Yonghai
2008-08-01
Fermentation kinetics is important for optimizing control and up-scaling fermentation process. We studied submerged fermentation kinetics of Morchella. Applying the genetic Algorithm in the Matlab software platform, we compared suitability of the Monod and Logistic models, both are commonly used in process of fungal growth, to describe Morchella growth kinetics. Meanwhile, we evaluated parameters involved in the models for Morchella growth, EPS production and substrate consumption. The results indicated that Logistic model fit better with the experimental data. The average error of this model was 5.8%. This kinetics model can be useful for optimizing and up-scaling fungal fermentation process.
Synthesizing Dynamic Programming Algorithms from Linear Temporal Logic Formulae
NASA Technical Reports Server (NTRS)
Rosu, Grigore; Havelund, Klaus
2001-01-01
The problem of testing a linear temporal logic (LTL) formula on a finite execution trace of events, generated by an executing program, occurs naturally in runtime analysis of software. We present an algorithm which takes an LTL formula and generates an efficient dynamic programming algorithm. The generated algorithm tests whether the LTL formula is satisfied by a finite trace of events given as input. The generated algorithm runs in linear time, its constant depending on the size of the LTL formula. The memory needed is constant, also depending on the size of the formula.
An Introduction to Genetic Algorithms and to Their Use in Information Retrieval.
ERIC Educational Resources Information Center
Jones, Gareth; And Others
1994-01-01
Genetic algorithms, a class of nondeterministic algorithms in which the role of chance makes the precise nature of a solution impossible to guarantee, seem to be well suited to combinatorial-optimization problems in information retrieval. Provides an introduction to techniques and characteristics of genetic algorithms and illustrates their…
Internal lattice reconfiguration for diversity tuning in Cellular Genetic Algorithms.
Morales-Reyes, Alicia; Erdogan, Ahmet T
2012-01-01
Cellular Genetic Algorithms (cGAs) have attracted the attention of researchers due to their high performance, ease of implementation and massive parallelism. Maintaining an adequate balance between exploitative and explorative search is essential when studying evolutionary optimization techniques. In this respect, cGAs inherently possess a number of structural configuration parameters that are able to sustain diversity during evolution. In this study, the internal reconfiguration of the lattice is proposed to constantly or adaptively control the exploration-exploitation trade-off. Genetic operators are characterized in their simplest form since algorithmic performance is assessed on implemented reconfiguration mechanisms. Moreover, internal reconfiguration allows the adjacency of individuals to be maintained. Hence, any improvement in performance is only a consequence of topological changes. Two local selection methods presenting opposite selection pressures are used in order to evaluate the influence of the proposed techniques. Problems ranging from continuous to real world and combinatorial are tackled. Empirical results are supported statistically in terms of efficiency and efficacy.
Partial AUC maximization for essential gene prediction using genetic algorithms.
Hwang, Kyu-Baek; Ha, Beom-Yong; Ju, Sanghun; Kim, Sangsoo
2013-01-01
Identifying genes indispensable for an organism's life and their characteristics is one of the central questions in current biological research, and hence it would be helpful to develop computational approaches towards the prediction of essential genes. The performance of a predictor is usually measured by the area under the receiver operating characteristic curve (AUC). We propose a novel method by implementing genetic algorithms to maximize the partial AUC that is restricted to a specific interval of lower false positive rate (FPR), the region relevant to follow-up experimental validation. Our predictor uses various features based on sequence information, protein-protein interaction network topology, and gene expression profiles. A feature selection wrapper was developed to alleviate the over-fitting problem and to weigh each feature's relevance to prediction. We evaluated our method using the proteome of budding yeast. Our implementation of genetic algorithms maximizing the partial AUC below 0.05 or 0.10 of FPR outperformed other popular classification methods.
Reliable prediction of adsorption isotherms via genetic algorithm molecular simulation.
LoftiKatooli, L; Shahsavand, A
2017-01-01
Conventional molecular simulation techniques such as grand canonical Monte Carlo (GCMC) strictly rely on purely random search inside the simulation box for predicting the adsorption isotherms. This blind search is usually extremely time demanding for providing a faithful approximation of the real isotherm and in some cases may lead to non-optimal solutions. A novel approach is presented in this article which does not use any of the classical steps of the standard GCMC method, such as displacement, insertation, and removal. The new approach is based on the well-known genetic algorithm to find the optimal configuration for adsorption of any adsorbate on a structured adsorbent under prevailing pressure and temperature. The proposed approach considers the molecular simulation problem as a global optimization challenge. A detailed flow chart of our so-called genetic algorithm molecular simulation (GAMS) method is presented, which is entirely different from traditions molecular simulation approaches. Three real case studies (for adsorption of CO2 and H2 over various zeolites) are borrowed from literature to clearly illustrate the superior performances of the proposed method over the standard GCMC technique. For the present method, the average absolute values of percentage errors are around 11% (RHO-H2), 5% (CHA-CO2), and 16% (BEA-CO2), while they were about 70%, 15%, and 40% for the standard GCMC technique, respectively.
Learning lung nodule similarity using a genetic algorithm
NASA Astrophysics Data System (ADS)
Seitz, Kerry A., Jr.; Giuca, Anne-Marie; Furst, Jacob; Raicu, Daniela
2012-03-01
The effectiveness and efficiency of content-based image retrieval (CBIR) can be improved by determining an optimal combination of image features to use in determining similarity between images. This combination of features can be optimized using a genetic algorithm (GA). Although several studies have used genetic algorithms to refine image features and similarity measures in CBIR, the present study is the first to apply these techniques to medical image retrieval. By implementing a GA to test different combinations of image features for pulmonary nodules in CT scans, the set of image features was reduced to 29 features from a total of 63 extracted features. The performance of the CBIR system was assessed by calculating the average precision across all query nodules. The precision values obtained using the GA-reduced set of features were significantly higher than those found using all 63 image features. Using radiologist-annotated malignancy ratings as ground truth resulted in an average precision of 85.95% after 3 images retrieved per query nodule when using the feature set identified by the GA. Using computer-predicted malignancy ratings as ground truth resulted in an average precision of 86.91% after 3 images retrieved. The results suggest that in the absence of radiologist semantic ratings, using computer-predicted malignancy as ground truth is a valid substitute given the closeness of the two precision values.
Feature Subset Selection, Class Separability, and Genetic Algorithms
Cantu-Paz, E
2004-01-21
The performance of classification algorithms in machine learning is affected by the features used to describe the labeled examples presented to the inducers. Therefore, the problem of feature subset selection has received considerable attention. Genetic approaches to this problem usually follow the wrapper approach: treat the inducer as a black box that is used to evaluate candidate feature subsets. The evaluations might take a considerable time and the traditional approach might be unpractical for large data sets. This paper describes a hybrid of a simple genetic algorithm and a method based on class separability applied to the selection of feature subsets for classification problems. The proposed hybrid was compared against each of its components and two other feature selection wrappers that are used widely. The objective of this paper is to determine if the proposed hybrid presents advantages over the other methods in terms of accuracy or speed in this problem. The experiments used a Naive Bayes classifier and public-domain and artificial data sets. The experiments suggest that the hybrid usually finds compact feature subsets that give the most accurate results, while beating the execution time of the other wrappers.
Segmentation of thermographic images of hands using a genetic algorithm
NASA Astrophysics Data System (ADS)
Ghosh, Payel; Mitchell, Melanie; Gold, Judith
2010-01-01
This paper presents a new technique for segmenting thermographic images using a genetic algorithm (GA). The individuals of the GA also known as chromosomes consist of a sequence of parameters of a level set function. Each chromosome represents a unique segmenting contour. An initial population of segmenting contours is generated based on the learned variation of the level set parameters from training images. Each segmenting contour (an individual) is evaluated for its fitness based on the texture of the region it encloses. The fittest individuals are allowed to propagate to future generations of the GA run using selection, crossover and mutation. The dataset consists of thermographic images of hands of patients suffering from upper extremity musculo-skeletal disorders (UEMSD). Thermographic images are acquired to study the skin temperature as a surrogate for the amount of blood flow in the hands of these patients. Since entire hands are not visible on these images, segmentation of the outline of the hands on these images is typically performed by a human. In this paper several different methods have been tried for segmenting thermographic images: Gabor-wavelet-based texture segmentation method, the level set method of segmentation and our GA which we termed LSGA because it combines level sets with genetic algorithms. The results show a comparative evaluation of the segmentation performed by all the methods. We conclude that LSGA successfully segments entire hands on images in which hands are only partially visible.
Optimal robust motion controller design using multiobjective genetic algorithm.
Sarjaš, Andrej; Svečko, Rajko; Chowdhury, Amor
2014-01-01
This paper describes the use of a multiobjective genetic algorithm for robust motion controller design. Motion controller structure is based on a disturbance observer in an RIC framework. The RIC approach is presented in the form with internal and external feedback loops, in which an internal disturbance rejection controller and an external performance controller must be synthesised. This paper involves novel objectives for robustness and performance assessments for such an approach. Objective functions for the robustness property of RIC are based on simple even polynomials with nonnegativity conditions. Regional pole placement method is presented with the aims of controllers' structures simplification and their additional arbitrary selection. Regional pole placement involves arbitrary selection of central polynomials for both loops, with additional admissible region of the optimized pole location. Polynomial deviation between selected and optimized polynomials is measured with derived performance objective functions. A multiobjective function is composed of different unrelated criteria such as robust stability, controllers' stability, and time-performance indexes of closed loops. The design of controllers and multiobjective optimization procedure involve a set of the objectives, which are optimized simultaneously with a genetic algorithm-differential evolution.
Actuator Placement Via Genetic Algorithm for Aircraft Morphing
NASA Technical Reports Server (NTRS)
Crossley, William A.; Cook, Andrea M.
2001-01-01
This research continued work that began under the support of NASA Grant NAG1-2119. The focus of this effort was to continue investigations of Genetic Algorithm (GA) approaches that could be used to solve an actuator placement problem by treating this as a discrete optimization problem. In these efforts, the actuators are assumed to be "smart" devices that change the aerodynamic shape of an aircraft wing to alter the flow past the wing, and, as a result, provide aerodynamic moments that could provide flight control. The earlier work investigated issued for the problem statement, developed the appropriate actuator modeling, recognized the importance of symmetry for this problem, modified the aerodynamic analysis routine for more efficient use with the genetic algorithm, and began a problem size study to measure the impact of increasing problem complexity. The research discussed in this final summary further investigated the problem statement to provide a "combined moment" problem statement to simultaneously address roll, pitch and yaw. Investigations of problem size using this new problem statement provided insight into performance of the GA as the number of possible actuator locations increased. Where previous investigations utilized a simple wing model to develop the GA approach for actuator placement, this research culminated with application of the GA approach to a high-altitude unmanned aerial vehicle concept to demonstrate that the approach is valid for an aircraft configuration.
Ternary alloy material prediction using genetic algorithm and cluster expansion
Chen, Chong
2015-12-01
This thesis summarizes our study on the crystal structures prediction of Fe-V-Si system using genetic algorithm and cluster expansion. Our goal is to explore and look for new stable compounds. We started from the current ten known experimental phases, and calculated formation energies of those compounds using density functional theory (DFT) package, namely, VASP. The convex hull was generated based on the DFT calculations of the experimental known phases. Then we did random search on some metal rich (Fe and V) compositions and found that the lowest energy structures were body centered cube (bcc) underlying lattice, under which we did our computational systematic searches using genetic algorithm and cluster expansion. Among hundreds of the searched compositions, thirteen were selected and DFT formation energies were obtained by VASP. The stability checking of those thirteen compounds was done in reference to the experimental convex hull. We found that the composition, 24-8-16, i.e., Fe_{3}VSi_{2} is a new stable phase and it can be very inspiring to the future experiments.
Fusion techniques of fuzzy systems and neural networks, and fuzzy systems and genetic algorithms
NASA Astrophysics Data System (ADS)
Takagi, Hideyuki
1993-12-01
This paper overviews four combinations of fuzzy logic, neural networks and genetic algorithms: (1) neural networks to auto-design fuzzy systems, (2) employing fuzzy rule structure to construct structured neural networks, (3) genetic algorithms to auto-design fuzzy systems, and (4) a fuzzy knowledge-based system to control genetic parameter dynamically.
Avionics equipment failure prediction based on genetic programming and grey model
NASA Astrophysics Data System (ADS)
Deng, Xiujian; Luo, Qiang; Zhao, Yiyang; Feng, Qi
2017-01-01
Avionics equipment failure prediction by conventional GM (Grey Model) may yield large forecasting errors. Combining GM (1, 1) model with genetic programming algorithm, a kind of GP-GM (1, 1) forecast model was established to minimize such errors. Forecasting sequence was calculated by means of GM (1, 1) model, then genetic programming algorithm was used to modify them further, and the degradation trend prediction of characteristic parameters of avionics equipment was realized. The validity of GP-GM (1, 1) prediction model was testified by tracking and forecasting the experiment data of avionics equipment in real environment.
Enghauser, Michael
2015-02-01
The goal of the Domestic Nuclear Detection Office (DNDO) Algorithm Improvement Program (AIP) is to facilitate gamma-radiation detector nuclide identification algorithm development, improvement, and validation. Accordingly, scoring criteria have been developed to objectively assess the performance of nuclide identification algorithms. In addition, a Microsoft Excel spreadsheet application for automated nuclide identification scoring has been developed. This report provides an overview of the equations, nuclide weighting factors, nuclide equivalencies, and configuration weighting factors used by the application for scoring nuclide identification algorithm performance. Furthermore, this report presents a general overview of the nuclide identification algorithm scoring application including illustrative examples.
Source mask optimization using real-coded genetic algorithms
NASA Astrophysics Data System (ADS)
Yang, Chaoxing; Wang, Xiangzhao; Li, Sikun; Erdmann, Andreas
2013-04-01
Source mask optimization (SMO) is considered to be one of the technologies to push conventional 193nm lithography to its ultimate limits. In comparison with other SMO methods that use an inverse problem formulation, SMO based on genetic algorithm (GA) requires very little knowledge of the process, and has the advantage of flexible problem formulation. Recent publications on SMO using a GA employ a binary-coded GA. In general, the performance of a GA depends not only on the merit or fitness function, but also on the parameters, operators and their algorithmic implementation. In this paper, we propose a SMO method using real-coded GA where the source and mask solutions are represented by floating point strings instead of bit strings. Besides from that, the selection, crossover, and mutation operators are replaced by corresponding floating-point versions. Both binary-coded and real-coded genetic algorithms were implemented in two versions of SMO and compared in numerical experiments, where the target patterns are staggered contact holes and a logic pattern with critical dimensions of 100 nm, respectively. The results demonstrate the performance improvement of the real-coded GA in comparison to the binary-coded version. Specifically, these improvements can be seen in a better convergence behavior. For example, the numerical experiments for the logic pattern showed that the average number of generations to converge to a proper fitness of 6.0 using the real-coded method is 61.8% (100 generations) less than that using binary-coded method.
Experience with a Genetic Algorithm Implemented on a Multiprocessor Computer
NASA Technical Reports Server (NTRS)
Plassman, Gerald E.; Sobieszczanski-Sobieski, Jaroslaw
2000-01-01
Numerical experiments were conducted to find out the extent to which a Genetic Algorithm (GA) may benefit from a multiprocessor implementation, considering, on one hand, that analyses of individual designs in a population are independent of each other so that they may be executed concurrently on separate processors, and, on the other hand, that there are some operations in a GA that cannot be so distributed. The algorithm experimented with was based on a gaussian distribution rather than bit exchange in the GA reproductive mechanism, and the test case was a hub frame structure of up to 1080 design variables. The experimentation engaging up to 128 processors confirmed expectations of radical elapsed time reductions comparing to a conventional single processor implementation. It also demonstrated that the time spent in the non-distributable parts of the algorithm and the attendant cross-processor communication may have a very detrimental effect on the efficient utilization of the multiprocessor machine and on the number of processors that can be used effectively in a concurrent manner. Three techniques were devised and tested to mitigate that effect, resulting in efficiency increasing to exceed 99 percent.
Adaptive primal-dual genetic algorithms in dynamic environments.
Wang, Hongfeng; Yang, Shengxiang; Ip, W H; Wang, Dingwei
2009-12-01
Recently, there has been an increasing interest in applying genetic algorithms (GAs) in dynamic environments. Inspired by the complementary and dominance mechanisms in nature, a primal-dual GA (PDGA) has been proposed for dynamic optimization problems (DOPs). In this paper, an important operator in PDGA, i.e., the primal-dual mapping (PDM) scheme, is further investigated to improve the robustness and adaptability of PDGA in dynamic environments. In the improved scheme, two different probability-based PDM operators, where the mapping probability of each allele in the chromosome string is calculated through the statistical information of the distribution of alleles in the corresponding gene locus over the population, are effectively combined according to an adaptive Lamarckian learning mechanism. In addition, an adaptive dominant replacement scheme, which can probabilistically accept inferior chromosomes, is also introduced into the proposed algorithm to enhance the diversity level of the population. Experimental results on a series of dynamic problems generated from several stationary benchmark problems show that the proposed algorithm is a good optimizer for DOPs.
Optimization of an antenna array using genetic algorithms
Kiehbadroudinezhad, Shahideh; Noordin, Nor Kamariah; Sali, A.; Abidin, Zamri Zainal
2014-06-01
An array of antennas is usually used in long distance communication. The observation of celestial objects necessitates a large array of antennas, such as the Giant Metrewave Radio Telescope (GMRT). Optimizing this kind of array is very important when observing a high performance system. The genetic algorithm (GA) is an optimization solution for these kinds of problems that reconfigures the position of antennas to increase the u-v coverage plane or decrease the sidelobe levels (SLLs). This paper presents how to optimize a correlator antenna array using the GA. A brief explanation about the GA and operators used in this paper (mutation and crossover) is provided. Then, the results of optimization are discussed. The results show that the GA provides efficient and optimum solutions among a pool of candidate solutions in order to achieve the desired array performance for the purposes of radio astronomy. The proposed algorithm is able to distribute the u-v plane more efficiently than GMRT with a more than 95% distribution ratio at snapshot, and to fill the u-v plane from a 20% to more than 68% filling ratio as the number of generations increases in the hour tracking observations. Finally, the algorithm is able to reduce the SLL to –21.75 dB.
An Evolved Wavelet Library Based on Genetic Algorithm
Vaithiyanathan, D.; Seshasayanan, R.; Kunaraj, K.; Keerthiga, J.
2014-01-01
As the size of the images being captured increases, there is a need for a robust algorithm for image compression which satiates the bandwidth limitation of the transmitted channels and preserves the image resolution without considerable loss in the image quality. Many conventional image compression algorithms use wavelet transform which can significantly reduce the number of bits needed to represent a pixel and the process of quantization and thresholding further increases the compression. In this paper the authors evolve two sets of wavelet filter coefficients using genetic algorithm (GA), one for the whole image portion except the edge areas and the other for the portions near the edges in the image (i.e., global and local filters). Images are initially separated into several groups based on their frequency content, edges, and textures and the wavelet filter coefficients are evolved separately for each group. As there is a possibility of the GA settling in local maximum, we introduce a new shuffling operator to prevent the GA from this effect. The GA used to evolve filter coefficients primarily focuses on maximizing the peak signal to noise ratio (PSNR). The evolved filter coefficients by the proposed method outperform the existing methods by a 0.31 dB improvement in the average PSNR and a 0.39 dB improvement in the maximum PSNR. PMID:25405225
Integrating GIS and genetic algorithms for automating land partitioning
NASA Astrophysics Data System (ADS)
Demetriou, Demetris; See, Linda; Stillwell, John
2014-08-01
Land consolidation is considered to be the most effective land management planning approach for controlling land fragmentation and hence improving agricultural efficiency. Land partitioning is a basic process of land consolidation that involves the subdivision of land into smaller sub-spaces subject to a number of constraints. This paper explains the development of a module called LandParcelS (Land Parcelling System) that integrates geographical information systems and a genetic algorithm to automate the land partitioning process by designing and optimising land parcels in terms of their shape, size and value. This new module has been applied to two land blocks that are part of a larger case study area in Cyprus. Partitioning is carried out by guiding a Thiessen polygon process within ArcGIS and it is treated as a multiobjective problem. The results suggest that a step forward has been made in solving this complex spatial problem, although further research is needed to improve the algorithm. The contribution of this research extends land partitioning and space partitioning in general, since these approaches may have relevance to other spatial processes that involve single or multi-objective problems that could be solved in the future by spatial evolutionary algorithms.
Genetically programmed superparamagnetic behavior of mammalian cells.
Kim, Taeuk; Moore, David; Fussenegger, Martin
2012-12-31
Although magnetic fields and paramagnetic inorganic materials were abundant on planet earth during the entire evolution of living species the interaction of organisms with these physical forces remains a little-understood phenomenon. Interestingly, rather than being genetically encoded, organisms seem to accumulate and take advantage of inorganic nanoparticles to sense or react to magnetic fields. Using a synthetic biology-inspired approach we have genetically programmed mammalian cells to show superparamagnetic behavior. The combination of ectopic production of the human ferritin heavy chain 1 (hFTH1), engineering the cells for expression of an iron importer, the divalent metal ion transferase 1 (DMT1) and the design of an iron-loading culture medium to maximize cellular iron uptake enabled efficient iron mineralization in intracellular ferritin particles and conferred superparamagnetic behavior to the entire cell. When captured by a magnetic field the superparamagnetic cells reached attraction velocities of up to 30 μm/s and could be efficiently separated from complex cell mixtures using standard magnetic cell separation equipment. Technology that enables magnetic separation of genetically programmed superparamagnetic cells in the absence of inorganic particles could foster novel opportunities in diagnostics and cell-based therapies.
Genetic algorithm optimization for focusing through turbid media in noisy environments.
Conkey, Donald B; Brown, Albert N; Caravaca-Aguirre, Antonio M; Piestun, Rafael
2012-02-27
We introduce genetic algorithms (GA) for wavefront control to focus light through highly scattering media. We theoretically and experimentally compare GAs to existing phase control algorithms and show that GAs are particularly advantageous in low signal-to-noise environments.
Bornholdt, S.; Graudenz, D.
1993-07-01
A learning algorithm based on genetic algorithms for asymmetric neural networks with an arbitrary structure is presented. It is suited for the learning of temporal patterns and leads to stable neural networks with feedback.
A Partitioning and Bounded Variable Algorithm for Linear Programming
ERIC Educational Resources Information Center
Sheskin, Theodore J.
2006-01-01
An interesting new partitioning and bounded variable algorithm (PBVA) is proposed for solving linear programming problems. The PBVA is a variant of the simplex algorithm which uses a modified form of the simplex method followed by the dual simplex method for bounded variables. In contrast to the two-phase method and the big M method, the PBVA does…
Earth Tide Algorithms for the OMNIS Computer Program System.
1986-04-01
This report presents five computer algorithms that jointly specify the gravitational action by which the tidal redistributions of the Earth’s masses...routine is a simplified version of the fourth and is provided for use during computer program verification. All computer algorithms express the tidal
On a programming language for graph algorithms
NASA Technical Reports Server (NTRS)
Rheinboldt, W. C.; Basili, V. R.; Mesztenyi, C. K.
1971-01-01
An algorithmic language, GRAAL, is presented for describing and implementing graph algorithms of the type primarily arising in applications. The language is based on a set algebraic model of graph theory which defines the graph structure in terms of morphisms between certain set algebraic structures over the node set and arc set. GRAAL is modular in the sense that the user specifies which of these mappings are available with any graph. This allows flexibility in the selection of the storage representation for different graph structures. In line with its set theoretic foundation, the language introduces sets as a basic data type and provides for the efficient execution of all set and graph operators. At present, GRAAL is defined as an extension of ALGOL 60 (revised) and its formal description is given as a supplement to the syntactic and semantic definition of ALGOL. Several typical graph algorithms are written in GRAAL to illustrate various features of the language and to show its applicability.
PDoublePop: An implementation of parallel genetic algorithm for function optimization
NASA Astrophysics Data System (ADS)
Tsoulos, Ioannis G.; Tzallas, Alexandros; Tsalikakis, Dimitris
2016-12-01
A software for the implementation of parallel genetic algorithms is presented in this article. The underlying genetic algorithm is aimed to locate the global minimum of a multidimensional function inside a rectangular hyperbox. The proposed software named PDoublePop implements a client-server model for parallel genetic algorithms with advanced features for the local genetic algorithms such as: an enhanced stopping rule, an advanced mutation scheme and periodical application of a local search procedure. The user may code the objective function either in C++ or in Fortran77. The method is tested on a series of well-known test functions and the results are reported.
[Non-linear rectification of sensor based on immune genetic algorithm].
Lu, Lirong; Zhou, Jinyang; Niu, Xiaodong
2014-08-01
A non-linear rectification based on immune genetic algorithm (IGA) is proposed in this paper, for the shortcoming of the non-linearity rectification. This algorithm introducing the biologic immune mechanism into the genetic algorithm can restrain the disadvantages that the poor precision, slow convergence speed and early maturity of the genetic algorithm. Computer simulations indicated that the algorithm not only keeps population diversity, but also increases the convergent speed, precision and the stability greatly. The results have shown the correctness and effectiveness of the method.
An Intelligent Model for Pairs Trading Using Genetic Algorithms.
Huang, Chien-Feng; Hsu, Chi-Jen; Chen, Chi-Chung; Chang, Bao Rong; Li, Chen-An
2015-01-01
Pairs trading is an important and challenging research area in computational finance, in which pairs of stocks are bought and sold in pair combinations for arbitrage opportunities. Traditional methods that solve this set of problems mostly rely on statistical methods such as regression. In contrast to the statistical approaches, recent advances in computational intelligence (CI) are leading to promising opportunities for solving problems in the financial applications more effectively. In this paper, we present a novel methodology for pairs trading using genetic algorithms (GA). Our results showed that the GA-based models are able to significantly outperform the benchmark and our proposed method is capable of generating robust models to tackle the dynamic characteristics in the financial application studied. Based upon the promising results obtained, we expect this GA-based method to advance the research in computational intelligence for finance and provide an effective solution to pairs trading for investment in practice.
Genetic algorithms and solid state NMR pulse sequences
NASA Astrophysics Data System (ADS)
Bechmann, Matthias; Clark, John; Sebald, Angelika
2013-03-01
The use of genetic algorithms for the optimisation of magic angle spinning NMR pulse sequences is discussed. The discussion uses as an example the optimisation of the C721 dipolar recoupling pulse sequence, aiming to achieve improved efficiency for spin systems characterised by large chemical shielding anisotropies and/or small dipolar coupling interactions. The optimised pulse sequence is found to be robust over a wide range of parameters, requires only minimal a priori knowledge of the spin system for experimental implementations with buildup rates being solely determined by the magnitude of the dipolar coupling interaction, but is found to be less broadbanded than the original C721 pulse sequence. The optimised pulse sequence breaks the synchronicity between r.f. pulses and sample spinning.
Genetic Algorithms and Nucleation in VIH-AIDS transition.
NASA Astrophysics Data System (ADS)
Barranon, Armando
2003-03-01
VIH to AIDS transition has been modeled via a genetic algorithm that uses boom-boom principle and where population evolution is simulated with a cellular automaton based on SIR model. VIH to AIDS transition is signed by nucleation of infected cells and low probability of infection are obtained for different mutation rates in agreement with clinical results. A power law is obtained with a critical exponent close to the critical exponent of cubic, spherical percolation, colossal magnetic resonance, Ising Model and liquid-gas phase transition in heavy ion collisions. Computations were carried out at UAM-A Supercomputing Lab and author acknowledges financial support from Division of CBI at UAM-A.
Chiral metamaterial design using optimized pixelated inclusions with genetic algorithm
NASA Astrophysics Data System (ADS)
Akturk, Cemal; Karaaslan, Muharrem; Ozdemir, Ersin; Ozkaner, Vedat; Dincer, Furkan; Bakir, Mehmet; Ozer, Zafer
2015-03-01
Chiral metamaterials have been a research area for many researchers due to their polarization rotation properties on electromagnetic waves. However, most of the proposed chiral metamaterials are designed depending on experience or time-consuming inefficient simulations. A method is investigated for designing a chiral metamaterial with a strong and natural chirality admittance by optimizing a grid of metallic pixels through both sides of a dielectric sheet placed perpendicular to the incident wave by using a genetic algorithm (GA) technique based on finite element method solver. The effective medium parameters are obtained by using constitutive equations and S parameters. The proposed methodology is very efficient for designing a chiral metamaterial with the desired effective medium parameters. By using GA-based topology, it is proven that a chiral metamaterial can be designed and manufactured more easily and with a low cost.
Using Genetic Algorithms to Converge on Molecules with Specific Properties
NASA Astrophysics Data System (ADS)
Foster, Stephen; Lindzey, Nathan; Rogers, Jon; West, Carl; Potter, Walt; Smith, Sean; Alexander, Steven
2007-10-01
Although it can be a straightforward matter to determine the properties of a molecule from its structure, the inverse problem is much more difficult. We have chosen to generate molecules by using a genetic algorithm, a computer simulation that models biological evolution and natural selection. By creating a population of randomly generated molecules, we can apply a process of selection, mutation, and recombination to ensure that the best members of the population (i.e. those molecules that possess many of the qualities we are looking for) survive, while the worst members of the population ``die.'' The best members are then modified by random mutation and by ``mating'' with other molecules to produce ``offspring.'' After many hundreds (or thousands) of iterations, one hopes that the population will get better and better---that is, that the properties of the individuals in the population will more and more closely match the properties we want.
Merging of synchrotron serial crystallographic data by a genetic algorithm
Zander, Ulrich; Cianci, Michele; Foos, Nicolas; Silva, Catarina S.; Mazzei, Luca; Zubieta, Chloe; de Maria, Alejandro; Nanao, Max H.
2016-01-01
Recent advances in macromolecular crystallography have made it practical to rapidly collect hundreds of sub-data sets consisting of small oscillations of incomplete data. This approach, generally referred to as serial crystallography, has many uses, including an increased effective dose per data set, the collection of data from crystals without harvesting (in situ data collection) and studies of dynamic events such as catalytic reactions. However, selecting which data sets from this type of experiment should be merged can be challenging and new methods are required. Here, it is shown that a genetic algorithm can be used for this purpose, and five case studies are presented in which the merging statistics are significantly improved compared with conventional merging of all data. PMID:27599735
Population Induced Instabilities in Genetic Algorithms for Constrained Optimization
NASA Astrophysics Data System (ADS)
Vlachos, D. S.; Parousis-Orthodoxou, K. J.
2013-02-01
Evolutionary computation techniques, like genetic algorithms, have received a lot of attention as optimization techniques but, although they exhibit a very promising potential in curing the problem, they have not produced a significant breakthrough in the area of systematic treatment of constraints. There are two mainly ways of handling the constraints: the first is to produce an infeasibility measure and add it to the general cost function (the well known penalty methods) and the other is to modify the mutation and crossover operation in a way that they only produce feasible members. Both methods have their drawbacks and are strongly correlated to the problem that they are applied. In this work, we propose a different treatment of the constraints: we induce instabilities in the evolving population, in a way that infeasible solution cannot survive as they are. Preliminary results are presented in a set of well known from the literature constrained optimization problems.
Inverse problem of HIV cell dynamics using Genetic Algorithms
NASA Astrophysics Data System (ADS)
González, J. A.; Guzmán, F. S.
2017-01-01
In order to describe the cell dynamics of T-cells in a patient infected with HIV, we use a flavour of Perelson's model. This is a non-linear system of Ordinary Differential Equations that describes the evolution of healthy, latently infected, infected T-cell concentrations and the free viral cells. Different parameters in the equations give different dynamics. Considering the concentration of these types of cells is known for a particular patient, the inverse problem consists in estimating the parameters in the model. We solve this inverse problem using a Genetic Algorithm (GA) that minimizes the error between the solutions of the model and the data from the patient. These errors depend on the parameters of the GA, like mutation rate and population, although a detailed analysis of this dependence will be described elsewhere.
Optimization of Power Coefficient of Wind Turbine Using Genetic Algorithm
NASA Astrophysics Data System (ADS)
Rajakumar, Sappani; Ravindran, Durairaj; Sivakumar, Mahalingam; Venkatachalam, Gopalan; Muthukumar, Shunmugavelu
2016-06-01
In the design of a wind turbine, the goal is to attain the highest possible power output under specified atmospheric conditions. The optimization of power coefficient of horizontal axis wind turbine has been carried out by integration of blade element momentum method and genetic algorithm (GA). The design variables considered are wind velocity, angle of attack and tip speed ratio. The objective function is power coefficient of wind turbine. The different combination of design variables are optimized using GA and then the Power coefficient is optimized. The optimized design variables are validated with the experimental results available in the literature. By this optimization work the optimum design variables of wind turbine can be found economically than experimental work. NACA44XX series airfoils are considered for this optimization work.
Genetic Algorithm Optimization of a Cost Competitive Hybrid Rocket Booster
NASA Technical Reports Server (NTRS)
Story, George
2014-01-01
Performance, reliability and cost have always been drivers in the rocket business. Hybrid rockets have been late entries into the launch business due to substantial early development work on liquid rockets and later on solid rockets. Slowly the technology readiness level of hybrids has been increasing due to various large scale testing and flight tests of hybrid rockets. A remaining issue is the cost of hybrids vs the existing launch propulsion systems. This paper will review the known state of the art hybrid development work to date and incorporate it into a genetic algorithm to optimize the configuration based on various parameters. A cost module will be incorporated to the code based on the weights of the components. The design will be optimized on meeting the performance requirements at the lowest cost.
Noise reduction in selective computational ghost imaging using genetic algorithm
NASA Astrophysics Data System (ADS)
Zafari, Mohammad; Ahmadi-Kandjani, Sohrab; Kheradmand, Reza
2017-03-01
Recently, we have presented a selective computational ghost imaging (SCGI) method as an advanced technique for enhancing the security level of the encrypted ghost images. In this paper, we propose a modified method to improve the ghost image quality reconstructed by SCGI technique. The method is based on background subtraction using genetic algorithm (GA) which eliminates background noise and gives background-free ghost images. Analyzing the universal image quality index by using experimental data proves the advantage of this modification method. In particular, the calculated value of the image quality index for modified SCGI over 4225 realization shows an 11 times improvement with respect to SCGI technique. This improvement is 20 times in comparison to conventional CGI technique.
Genetic Algorithm Optimization of a Cost Competitive Hybrid Rocket Booster
NASA Technical Reports Server (NTRS)
Story, George
2015-01-01
Performance, reliability and cost have always been drivers in the rocket business. Hybrid rockets have been late entries into the launch business due to substantial early development work on liquid rockets and solid rockets. Slowly the technology readiness level of hybrids has been increasing due to various large scale testing and flight tests of hybrid rockets. One remaining issue is the cost of hybrids versus the existing launch propulsion systems. This paper will review the known state-of-the-art hybrid development work to date and incorporate it into a genetic algorithm to optimize the configuration based on various parameters. A cost module will be incorporated to the code based on the weights of the components. The design will be optimized on meeting the performance requirements at the lowest cost.
Scheduling Diet for Diabetes Mellitus Patients using Genetic Algorithm
NASA Astrophysics Data System (ADS)
Syahputra, M. F.; Felicia, V.; Rahmat, R. F.; Budiarto, R.
2017-01-01
Diabetes Melitus (DM) is one of metabolic diseases which affects on productivity and lowers the human resources quality. This disease can be controlled by maintaining and regulating balanced and healthy lifestyle especially for daily diet. However, nowadays, there is no system able to help DM patient to get any information of proper diet. Therefore, an approach is required to provide scheduling diet every day in a week with appropriate nutrition for DM patients to help them regulate their daily diet for healing this disease. In this research, we calculate the number of caloric needs using Harris-Benedict equation and propose genetic algorithm for scheduling diet for DM patient. The results show that the greater the number of individuals, the greater the more the possibility of changes in fitness score approaches the best fitness score. Moreover, the greater the created generation, the more the opportunites to obtain best individual with fitness score approaching 0 or equal to 0.
Strawberry Maturity Neural Network Detectng System Based on Genetic Algorithm
NASA Astrophysics Data System (ADS)
Xu, Liming
The quick and non-detective detection of agriculture product is one of the measures to increase the precision and productivity of harvesting and grading. Having analyzed H frequency of different maturities in different light intensities, the results show that H frequency for the same maturity has little influence in different light intensities; Under the same light intensity, three strawberry maturities are changing in order. After having confirmed the H frequency section to distinguish the different strawberry maturity, the triplelayer feed-forward neural network system to detect strawberry maturity was designed by using genetic algorithm. The test results show that the detecting precision ratio is 91.7%, it takes 160ms to distinguish one strawberry. Therefore, the online non-detective detecting the strawberry maturity could be realized.
An Intelligent Model for Pairs Trading Using Genetic Algorithms
Huang, Chien-Feng; Hsu, Chi-Jen; Chen, Chi-Chung; Chang, Bao Rong; Li, Chen-An
2015-01-01
Pairs trading is an important and challenging research area in computational finance, in which pairs of stocks are bought and sold in pair combinations for arbitrage opportunities. Traditional methods that solve this set of problems mostly rely on statistical methods such as regression. In contrast to the statistical approaches, recent advances in computational intelligence (CI) are leading to promising opportunities for solving problems in the financial applications more effectively. In this paper, we present a novel methodology for pairs trading using genetic algorithms (GA). Our results showed that the GA-based models are able to significantly outperform the benchmark and our proposed method is capable of generating robust models to tackle the dynamic characteristics in the financial application studied. Based upon the promising results obtained, we expect this GA-based method to advance the research in computational intelligence for finance and provide an effective solution to pairs trading for investment in practice. PMID:26339236
Alien Genetic Algorithm for Exploration of Search Space
NASA Astrophysics Data System (ADS)
Patel, Narendra; Padhiyar, Nitin
2010-10-01
Genetic Algorithm (GA) is a widely accepted population based stochastic optimization technique used for single and multi objective optimization problems. Various versions of modifications in GA have been proposed in last three decades mainly addressing two issues, namely increasing convergence rate and increasing probability of global minima. While both these. While addressing the first issue, GA tends to converge to a local optima and addressing the second issue corresponds the large computational efforts. Thus, to reduce the contradictory effects of these two aspects, we propose a modification in GA by adding an alien member in the population at every generation. Addition of an Alien member in the current population at every generation increases the probability of obtaining global minima at the same time maintaining higher convergence rate. With two test cases, we have demonstrated the efficacy of the proposed GA by comparing with the conventional GA.
Functional Localization of Genetic Network Programming
NASA Astrophysics Data System (ADS)
Eto, Shinji; Hirasawa, Kotaro; Hu, Jinglu
According to the knowledge of brain science, it is suggested that there exists cerebral functional localization, which means that a specific part of the cerebrum is activated depending on various kinds of information human receives. The aim of this paper is to build an artificial model to realize functional localization based on Genetic Network Programming (GNP), a new evolutionary computation method recently developed. GNP has a directed graph structure suitable for realizing functional localization. We studied the basic characteristics of the proposed system by making GNP work in a functionally localized way.
Selecting Random Distributed Elements for HIFU using Genetic Algorithm
NASA Astrophysics Data System (ADS)
Zhou, Yufeng
2011-09-01
As an effective and noninvasive therapeutic modality for tumor treatment, high-intensity focused ultrasound (HIFU) has attracted attention from both physicians and patients. New generations of HIFU systems with the ability to electrically steer the HIFU focus using phased array transducers have been under development. The presence of side and grating lobes may cause undesired thermal accumulation at the interface of the coupling medium (i.e. water) and skin, or in the intervening tissue. Although sparse randomly distributed piston elements could reduce the amplitude of grating lobes, there are theoretically no grating lobes with the use of concave elements in the new phased array HIFU. A new HIFU transmission strategy is proposed in this study, firing a number of but not all elements for a certain period and then changing to another group for the next firing sequence. The advantages are: 1) the asymmetric position of active elements may reduce the side lobes, and 2) each element has some resting time during the entire HIFU ablation (up to several hours for some clinical applications) so that the decreasing efficiency of the transducer due to thermal accumulation is minimized. Genetic algorithm was used for selecting randomly distributed elements in a HIFU array. Amplitudes of the first side lobes at the focal plane were used as the fitness value in the optimization. Overall, it is suggested that the proposed new strategy could reduce the side lobe and the consequent side-effects, and the genetic algorithm is effective in selecting those randomly distributed elements in a HIFU array.
A new perspective on dark energy modeling via genetic algorithms
NASA Astrophysics Data System (ADS)
Nesseris, Savvas; García-Bellido, Juan
2012-11-01
We use Genetic Algorithms to extract information from several cosmological probes, such as the type Ia supernovae (SnIa), the Baryon Acoustic Oscillations (BAO) and the growth rate of matter perturbations. This is done by implementing a model independent and bias-free reconstruction of the various scales and distances that characterize the data, like the luminosity dL(z) and the angular diameter distance dA(z) in the SnIa and BAO data, respectively, or the dependence with redshift of the matter density Ωm(a) in the growth rate data, fσ8(z). These quantities can then be used to reconstruct the expansion history of the Universe, and the resulting Dark Energy (DE) equation of state w(z) in the context of FRW models, or the mass radial function ΩM(r) in LTB models. In this way, the reconstruction is completely independent of our prior bias. Furthermore, we use this method to test the Etherington relation, ie the well-known relation between the luminosity and the angular diameter distance, η≡dL(z)/(1+z)2dA(z), which is equal to 1 in metric theories of gravity. We find that the present data seem to suggest a 3-σ deviation from one at redshifts z ~ 0.5. Finally, we present a novel way, within the Genetic Algorithm paradigm, to analytically estimate the errors on the reconstructed quantities by calculating a Path Integral over all possible functions that may contribute to the likelihood. We show that this can be done regardless of the data being correlated or uncorrelated with each other and we also explicitly demonstrate that our approach is in good agreement with other error estimation techniques like the Fisher Matrix approach and the Bootstrap Monte Carlo.
A scalable parallel algorithm for multiple objective linear programs
NASA Technical Reports Server (NTRS)
Wiecek, Malgorzata M.; Zhang, Hong
1994-01-01
This paper presents an ADBASE-based parallel algorithm for solving multiple objective linear programs (MOLP's). Job balance, speedup and scalability are of primary interest in evaluating efficiency of the new algorithm. Implementation results on Intel iPSC/2 and Paragon multiprocessors show that the algorithm significantly speeds up the process of solving MOLP's, which is understood as generating all or some efficient extreme points and unbounded efficient edges. The algorithm gives specially good results for large and very large problems. Motivation and justification for solving such large MOLP's are also included.
LIGO detector characterization with genetic programming
NASA Astrophysics Data System (ADS)
Cavaglia, Marco; Staats, Kai; Errico, Luciano; Mogushi, Kentaro; Gabbard, Hunter
2017-01-01
Genetic Programming (GP) is a supervised approach to Machine Learning. GP has for two decades been applied to a diversity of problems, from predictive and financial modelling to data mining, from code repair to optical character recognition and product design. GP uses a stochastic search, tournament, and fitness function to explore a solution space. GP evolves a population of individual programs, through multiple generations, following the principals of biological evolution (mutation and reproduction) to discover a model that best fits or categorizes features in a given data set. We apply GP to categorization of LIGO noise and show that it can effectively be used to characterize the detector non-astrophysical noise both in low latency and offline searches. National Science Foundation award PHY-1404139.
Human emotion detector based on genetic algorithm using lip features
NASA Astrophysics Data System (ADS)
Brown, Terrence; Fetanat, Gholamreza; Homaifar, Abdollah; Tsou, Brian; Mendoza-Schrock, Olga
2010-04-01
We predicted human emotion using a Genetic Algorithm (GA) based lip feature extractor from facial images to classify all seven universal emotions of fear, happiness, dislike, surprise, anger, sadness and neutrality. First, we isolated the mouth from the input images using special methods, such as Region of Interest (ROI) acquisition, grayscaling, histogram equalization, filtering, and edge detection. Next, the GA determined the optimal or near optimal ellipse parameters that circumvent and separate the mouth into upper and lower lips. The two ellipses then went through fitness calculation and were followed by training using a database of Japanese women's faces expressing all seven emotions. Finally, our proposed algorithm was tested using a published database consisting of emotions from several persons. The final results were then presented in confusion matrices. Our results showed an accuracy that varies from 20% to 60% for each of the seven emotions. The errors were mainly due to inaccuracies in the classification, and also due to the different expressions in the given emotion database. Detailed analysis of these errors pointed to the limitation of detecting emotion based on the lip features alone. Similar work [1] has been done in the literature for emotion detection in only one person, we have successfully extended our GA based solution to include several subjects.
Primary chromatic aberration elimination via optimization work with genetic algorithm
NASA Astrophysics Data System (ADS)
Wu, Bo-Wen; Liu, Tung-Kuan; Fang, Yi-Chin; Chou, Jyh-Horng; Tsai, Hsien-Lin; Chang, En-Hao
2008-09-01
Chromatic Aberration plays a part in modern optical systems, especially in digitalized and smart optical systems. Much effort has been devoted to eliminating specific chromatic aberration in order to match the demand for advanced digitalized optical products. Basically, the elimination of axial chromatic and lateral color aberration of an optical lens and system depends on the selection of optical glass. According to reports from glass companies all over the world, the number of various newly developed optical glasses in the market exceeds three hundred. However, due to the complexity of a practical optical system, optical designers have so far had difficulty in finding the right solution to eliminate small axial and lateral chromatic aberration except by the Damped Least Squares (DLS) method, which is limited in so far as the DLS method has not yet managed to find a better optical system configuration. In the present research, genetic algorithms are used to replace traditional DLS so as to eliminate axial and lateral chromatic, by combining the theories of geometric optics in Tessar type lenses and a technique involving Binary/Real Encoding, Multiple Dynamic Crossover and Random Gene Mutation to find a much better configuration for optical glasses. By implementing the algorithms outlined in this paper, satisfactory results can be achieved in eliminating axial and lateral color aberration.
An enhanced nonparametric streamflow disaggregation model with genetic algorithm
NASA Astrophysics Data System (ADS)
Lee, T.; Salas, J. D.; Prairie, J.
2010-08-01
Stochastic streamflow generation is generally utilized for planning and management of water resources systems. For this purpose, a number of parametric and nonparametric models have been suggested in literature. Among them, temporal and spatial disaggregation approaches play an important role particularly to make sure that historical variance-covariance properties are preserved at various temporal and spatial scales. In this paper, we review the underlying features of existing nonparametric disaggregation methods, identify some of their pros and cons, and propose a disaggregation algorithm that is capable of surmounting some of the shortcomings of the current models. The proposed models hinge on k-nearest neighbor resampling, the accurate adjusting procedure, and a genetic algorithm. The models have been tested and compared to an existing nonparametric disaggregation approach using data of the Colorado River system. It has been shown that the model is capable of (1) reproducing the season-to-season correlations including the correlation between the last season of the previous year and the first season of the current year, (2) minimizing or avoiding the generation of flow patterns across the year that are literally the same as those of the historical records, and (3) minimizing or avoiding the generation of negative flows. In addition, it is applicable to intermittent river regimes.
Use of genetic algorithm for the selection of EEG features
NASA Astrophysics Data System (ADS)
Asvestas, P.; Korda, A.; Kostopoulos, S.; Karanasiou, I.; Ouzounoglou, A.; Sidiropoulos, K.; Ventouras, E.; Matsopoulos, G.
2015-09-01
Genetic Algorithm (GA) is a popular optimization technique that can detect the global optimum of a multivariable function containing several local optima. GA has been widely used in the field of biomedical informatics, especially in the context of designing decision support systems that classify biomedical signals or images into classes of interest. The aim of this paper is to present a methodology, based on GA, for the selection of the optimal subset of features that can be used for the efficient classification of Event Related Potentials (ERPs), which are recorded during the observation of correct or incorrect actions. In our experiment, ERP recordings were acquired from sixteen (16) healthy volunteers who observed correct or incorrect actions of other subjects. The brain electrical activity was recorded at 47 locations on the scalp. The GA was formulated as a combinatorial optimizer for the selection of the combination of electrodes that maximizes the performance of the Fuzzy C Means (FCM) classification algorithm. In particular, during the evolution of the GA, for each candidate combination of electrodes, the well-known (Σ, Φ, Ω) features were calculated and were evaluated by means of the FCM method. The proposed methodology provided a combination of 8 electrodes, with classification accuracy 93.8%. Thus, GA can be the basis for the selection of features that discriminate ERP recordings of observations of correct or incorrect actions.
A genetic algorithm for flexible molecular overlay and pharmacophore elucidation
NASA Astrophysics Data System (ADS)
Jones, Gareth; Willett, Peter; Glen, Robert C.
1995-12-01
A genetic algorithm (GA) has been developed for the superimposition of sets of flexible molecules. Molecules are represented by a chromosome that encodes angles of rotation about flexible bonds and mappings between hydrogen-bond donor proton, acceptor lone pair and ring centre features in pairs of molecules. The molecule with the smallest number of features in the data set is used as a template, onto which the remaining molecules are fitted with the objective of maximising structural equivalences. The fitness function of the GA is a weighted combination of: (i) the number and the similarity of the features that have been overlaid in this way; (ii) the volume integral of the overlay; and (iii) the van der Waals energy of the molecular conformations defined by the torsion angles encoded in the chromosomes. The algorithm has been applied to a number of pharmacophore elucidation problems, i.e., angiotensin II receptor antagonists, Leu-enkephalin and a hybrid morphine molecule, 5-HT1D agonists, benzodiazepine receptor ligands, 5-HT3 antagonists, dopamine D2 antagonists, dopamine reuptake blockers and FKBP12 ligands. The resulting pharmacophores are generated rapidly and are in good agreement with those derived from alternative means.
Accurate construction of consensus genetic maps via integer linear programming.
Wu, Yonghui; Close, Timothy J; Lonardi, Stefano
2011-01-01
We study the problem of merging genetic maps, when the individual genetic maps are given as directed acyclic graphs. The computational problem is to build a consensus map, which is a directed graph that includes and is consistent with all (or, the vast majority of) the markers in the input maps. However, when markers in the individual maps have ordering conflicts, the resulting consensus map will contain cycles. Here, we formulate the problem of resolving cycles in the context of a parsimonious paradigm that takes into account two types of errors that may be present in the input maps, namely, local reshuffles and global displacements. The resulting combinatorial optimization problem is, in turn, expressed as an integer linear program. A fast approximation algorithm is proposed, and an additional speedup heuristic is developed. Our algorithms were implemented in a software tool named MERGEMAP which is freely available for academic use. An extensive set of experiments shows that MERGEMAP consistently outperforms JOINMAP, which is the most popular tool currently available for this task, both in terms of accuracy and running time. MERGEMAP is available for download at http://www.cs.ucr.edu/~yonghui/mgmap.html.
Optimal Robust Motion Controller Design Using Multiobjective Genetic Algorithm
Svečko, Rajko
2014-01-01
This paper describes the use of a multiobjective genetic algorithm for robust motion controller design. Motion controller structure is based on a disturbance observer in an RIC framework. The RIC approach is presented in the form with internal and external feedback loops, in which an internal disturbance rejection controller and an external performance controller must be synthesised. This paper involves novel objectives for robustness and performance assessments for such an approach. Objective functions for the robustness property of RIC are based on simple even polynomials with nonnegativity conditions. Regional pole placement method is presented with the aims of controllers' structures simplification and their additional arbitrary selection. Regional pole placement involves arbitrary selection of central polynomials for both loops, with additional admissible region of the optimized pole location. Polynomial deviation between selected and optimized polynomials is measured with derived performance objective functions. A multiobjective function is composed of different unrelated criteria such as robust stability, controllers' stability, and time-performance indexes of closed loops. The design of controllers and multiobjective optimization procedure involve a set of the objectives, which are optimized simultaneously with a genetic algorithm—differential evolution. PMID:24987749
Sequential Quadratic Programming Algorithms for Optimization
1989-08-01
brief history of the evolution of SQP algorithms. Surveys for this area can be found in [GMWSl]. (Po831 or fGNISW ,] for example. The origins Ihe...0) S (TnI(P(O) K __jnfl’flj)j 2 < 0. lhe adjust uncut of thleslack variables. s in step (Ii) oft he algorith (-ii a ii only lvad to a fu rt her red
Optimization of heterogeneous Bin packing using adaptive genetic algorithm
NASA Astrophysics Data System (ADS)
Sridhar, R.; Chandrasekaran, M.; Sriramya, C.; Page, Tom
2017-03-01
This research is concentrates on a very interesting work, the bin packing using hybrid genetic approach. The optimal and feasible packing of goods for transportation and distribution to various locations by satisfying the practical constraints are the key points in this project work. As the number of boxes for packing can not be predicted in advance and the boxes may not be of same category always. It also involves many practical constraints that are why the optimal packing makes much importance to the industries. This work presents a combinational of heuristic Genetic Algorithm (HGA) for solving Three Dimensional (3D) Single container arbitrary sized rectangular prismatic bin packing optimization problem by considering most of the practical constraints facing in logistic industries. This goal was achieved in this research by optimizing the empty volume inside the container using genetic approach. Feasible packing pattern was achieved by satisfying various practical constraints like box orientation, stack priority, container stability, weight constraint, overlapping constraint, shipment placement constraint. 3D bin packing problem consists of ‘n’ number of boxes being to be packed in to a container of standard dimension in such a way to maximize the volume utilization and in-turn profit. Furthermore, Boxes to be packed may be of arbitrary sizes. The user input data are the number of bins, its size, shape, weight, and constraints if any along with standard container dimension. This user input were stored in the database and encoded to string (chromosomes) format which were normally acceptable by GA. GA operators were allowed to act over these encoded strings for finding the best solution.
Genetic Algorithms, Pulsar Planets, and Ionized Interstellar Microturbulence
NASA Astrophysics Data System (ADS)
Lazio, T. Joseph W.
1997-10-01
We probe the intense microturbulence in the Galactic center and the radio-wave scattering it generates by analyzing observations of extragalactic sources, OH and H2O masers, and free-free emission. The region responsible for the enhanced, anisotropic angular broadening of Sgr A* and nearby OH masers is within 150 pc of the Galactic center and has an angular radius ≈ 1o. The enhanced scattering probably occurs in the interface regions between 107 K gas and molecular clouds and is a manifestation of the energetic processes occurring in the Galactic center. Radio scattering measurements are also used to probe turbulent gas toward the Galactic anticenter. Ionized gas at Galactocentric distances ~50 kpc is suggested by absorption lines in quasar spectra, the appearance of the H I disks of nearby galaxies, and models for low-redshift quasar absorption systems and Galactic 'fountains.' We conducted multifrequency, Very Long Baseline Array (VLBA) observations on twelve extragalactic sources in order to measure their scattering sizes. Seven sources are at | b| < 1o and their lines of sight potentially probe path lengths ~>50 kpc through the disk. We find that the ionized disk is unwarped, has an extent of ≈20 kpc, and traces the extent of massive star formation in the outer Galaxy. Planetary companions to neutron stars are challenging to recognize amid the several processes that contribute to pulsar arrival time data. We use a genetic algorithm to search for planetary companions to pulsars. Genetic algorithms are an optimization method that uses biological-like concepts such as survival of the fittest, mutation, and chromosome exchange. The algorithm searches parameter space in the same way that life finds optimal niches in the biological environment-incremental rewarding of successful variations. Fitting for Keplerian orbits requires a search through four non-linear parameters per planet and is especially difficult if there is a large range of planetary masses and
Quantum algorithms for the ordered search problem via semidefinite programming
Childs, Andrew M.; Landahl, Andrew J.; Parrilo, Pablo A.
2007-03-15
One of the most basic computational problems is the task of finding a desired item in an ordered list of N items. While the best classical algorithm for this problem uses log{sub 2} N queries to the list, a quantum computer can solve the problem using a constant factor fewer queries. However, the precise value of this constant is unknown. By characterizing a class of quantum query algorithms for the ordered search problem in terms of a semidefinite program, we find quantum algorithms for small instances of the ordered search problem. Extending these algorithms to arbitrarily large instances using recursion, we show that there is an exact quantum ordered search algorithm using 4 log{sub 605} N{approx_equal}0.433 log{sub 2} N queries, which improves upon the previously best known exact algorithm.
Stochastic Semidefinite Programming: Applications and Algorithms
2012-03-03
doi: 2011/09/07 13:38:21 13 TOTAL: 1 Number of Papers published in non peer-reviewed journals: Baha M. Alzalg and K. A. Ariyawansa, Stochastic...symmetric programming over integers. International Conference on Scientific Computing, Las Vegas, Nevada, July 18--21, 2011. Baha M. Alzalg. On recent...Proceeding publications (other than abstracts): PaperReceived Baha M. Alzalg, K. A. Ariyawansa. Stochastic mixed integer second-order cone programming
Predicting Student Grades in Learning Management Systems with Multiple Instance Genetic Programming
ERIC Educational Resources Information Center
Zafra, Amelia; Ventura, Sebastian
2009-01-01
The ability to predict a student's performance could be useful in a great number of different ways associated with university-level learning. In this paper, a grammar guided genetic programming algorithm, G3P-MI, has been applied to predict if the student will fail or pass a certain course and identifies activities to promote learning in a…
NASA Astrophysics Data System (ADS)
Yang, Y. F.; Yang, M. D.; Tsai, T. Y.
2006-09-01
In traditional unsupervised classification method, the number of clusters usually needs to be assigned subjectively by analysts, but in fact, in most situations, the prior knowledge of the research subject is difficult to acquire, so the suitable and best cluster numbers are very difficult to define. Therefore, in this research, an effective heuristic unsupervised classification method-Genetic Algorithm (GA) is introduced and tested here, because it can be through the mathematical model and calculating procedure of optimization to determine the best cluster numbers and centers automatically. Furthermore, two well-known models--Davies-Bouldin's and the K-Means algorithm, which adopted by most research for the applications in pattern classification, are integrated with GA as the fitness functions. In a word, in this research, a heuristic method-Genetic Algorithm (GA), is adopted and integrated with two different indices as the fitness functions to automatically interpret the clusters of satellite images for unsupervised classification. The classification results were compared to conventional ISODATA results, and to ground truth information derived from a topographic map for the estimation of classification accuracy. All image-processing program is developed in MATLAB, and the GA unsupervised classifier is tested on several image examples.
Discovering Knowledge from Noisy Databases Using Genetic Programming.
ERIC Educational Resources Information Center
Wong, Man Leung; Leung, Kwong Sak; Cheng, Jack C. Y.
2000-01-01
Presents a framework that combines Genetic Programming and Inductive Logic Programming, two approaches in data mining, to induce knowledge from noisy databases. The framework is based on a formalism of logic grammars and is implemented as a data mining system called LOGENPRO (Logic Grammar-based Genetic Programming System). (Contains 34…
User-Based Document Clustering by Redescribing Subject Descriptions with a Genetic Algorithm.
ERIC Educational Resources Information Center
Gordon, Michael D.
1991-01-01
Discussion of clustering of documents and queries in information retrieval systems focuses on the use of a genetic algorithm to adapt subject descriptions so that documents become more effective in matching relevant queries. Various types of clustering are explained, and simulation experiments used to test the genetic algorithm are described. (27…
Order-Based Fitness Functions for Genetic Algorithms Applied to Relevance Feedback.
ERIC Educational Resources Information Center
Lopez-Pujalte, Cristina; Guerrero-Bote, Vicente P.; de Moya-Anegon, Felix
2003-01-01
Discusses genetic algorithms in information retrieval, especially for relevance feedback, and evaluates the efficacy of a genetic algorithm with various order-based fitness functions for relevance feedback in a test database. Compares results with the Ide dec-hi method, one of the best traditional methods. (Contains 56 references.) (Author/LRW)
New knowledge-based genetic algorithm for excavator boom structural optimization
NASA Astrophysics Data System (ADS)
Hua, Haiyan; Lin, Shuwen
2014-03-01
Due to the insufficiency of utilizing knowledge to guide the complex optimal searching, existing genetic algorithms fail to effectively solve excavator boom structural optimization problem. To improve the optimization efficiency and quality, a new knowledge-based real-coded genetic algorithm is proposed. A dual evolution mechanism combining knowledge evolution with genetic algorithm is established to extract, handle and utilize the shallow and deep implicit constraint knowledge to guide the optimal searching of genetic algorithm circularly. Based on this dual evolution mechanism, knowledge evolution and population evolution can be connected by knowledge influence operators to improve the configurability of knowledge and genetic operators. Then, the new knowledge-based selection operator, crossover operator and mutation operator are proposed to integrate the optimal process knowledge and domain culture to guide the excavator boom structural optimization. Eight kinds of testing algorithms, which include different genetic operators, are taken as examples to solve the structural optimization of a medium-sized excavator boom. By comparing the results of optimization, it is shown that the algorithm including all the new knowledge-based genetic operators can more remarkably improve the evolutionary rate and searching ability than other testing algorithms, which demonstrates the effectiveness of knowledge for guiding optimal searching. The proposed knowledge-based genetic algorithm by combining multi-level knowledge evolution with numerical optimization provides a new effective method for solving the complex engineering optimization problem.
SPLICER - A GENETIC ALGORITHM TOOL FOR SEARCH AND OPTIMIZATION, VERSION 1.0 (MACINTOSH VERSION)
NASA Technical Reports Server (NTRS)
Wang, L.
1994-01-01
SPLICER is a genetic algorithm tool which can be used to solve search and optimization problems. Genetic algorithms are adaptive search procedures (i.e. problem solving methods) based loosely on the processes of natural selection and Darwinian "survival of the fittest." SPLICER provides the underlying framework and structure for building a genetic algorithm application. These algorithms apply genetically-inspired operators to populations of potential solutions in an iterative fashion, creating new populations while searching for an optimal or near-optimal solution to the problem at hand. SPLICER 1.0 was created using a modular architecture that includes a Genetic Algorithm Kernel, interchangeable Representation Libraries, Fitness Modules and User Interface Libraries, and well-defined interfaces between these components. The architecture supports portability, flexibility, and extensibility. SPLICER comes with all source code and several examples. For instance, a "traveling salesperson" example searches for the minimum distance through a number of cities visiting each city only once. Stand-alone SPLICER applications can be used without any programming knowledge. However, to fully utilize SPLICER within new problem domains, familiarity with C language programming is essential. SPLICER's genetic algorithm (GA) kernel was developed independent of representation (i.e. problem encoding), fitness function or user interface type. The GA kernel comprises all functions necessary for the manipulation of populations. These functions include the creation of populations and population members, the iterative population model, fitness scaling, parent selection and sampling, and the generation of population statistics. In addition, miscellaneous functions are included in the kernel (e.g., random number generators). Different problem-encoding schemes and functions are defined and stored in interchangeable representation libraries. This allows the GA kernel to be used with any
Grant, C W; Lenderman, J S; Gansemer, J D
2011-02-24
This document is an update to the 'ADIS Algorithm Evaluation Project Plan' specified in the Statement of Work for the US-VISIT Identity Matching Algorithm Evaluation Program, as deliverable II.D.1. The original plan was delivered in August 2010. This document modifies the plan to reflect modified deliverables reflecting delays in obtaining a database refresh. This document describes the revised schedule of the program deliverables. The detailed description of the processes used, the statistical analysis processes and the results of the statistical analysis will be described fully in the program deliverables. The US-VISIT Identity Matching Algorithm Evaluation Program is work performed by Lawrence Livermore National Laboratory (LLNL) under IAA HSHQVT-07-X-00002 P00004 from the Department of Homeland Security (DHS).
Suspended sediment modeling using genetic programming and soft computing techniques
NASA Astrophysics Data System (ADS)
Kisi, Ozgur; Dailr, Ali Hosseinzadeh; Cimen, Mesut; Shiri, Jalal
2012-07-01
SummaryModeling suspended sediment load is an important factor in water resources engineering as it crucially affects the design and management of water resources structures. In this study the genetic programming (GP) technique was applied for estimating the daily suspended sediment load in two stations in Cumberland River in U.S. Daily flow and sediment data from 1972 to 1989 were used to train and test the applied genetic programming models. The effect of various GP operators on sediment load estimation was investigated. The optimal fitness function, operator functions, linking function and learning algorithm were obtained for modeling daily suspended sediment. The GP estimates were compared with those of the Adaptive Neuro-Fuzzy Inference System (ANFIS), Artificial Neural Networks (ANNs) and Support Vector Machine (SVM) results, in term of coefficient of determination, mean absolute error, coefficient of residual mass and variance accounted for. The comparison results indicated that the GP is superior to the ANFIS, ANN and SVM models in estimating daily suspended sediment load.
Modelling and genetic algorithm based optimisation of inverse supply chain
NASA Astrophysics Data System (ADS)
Bányai, T.
2009-04-01
(Recycling of household appliances with emphasis on reuse options). The purpose of this paper is the presentation of a possible method for avoiding the unnecessary environmental risk and landscape use through unprovoked large supply chain of collection systems of recycling processes. In the first part of the paper the author presents the mathematical model of recycling related collection systems (applied especially for wastes of electric and electronic products) and in the second part of the work a genetic algorithm based optimisation method will be demonstrated, by the aid of which it is possible to determine the optimal structure of the inverse supply chain from the point of view economical, ecological and logistic objective functions. The model of the inverse supply chain is based on a multi-level, hierarchical collection system. In case of this static model it is assumed that technical conditions are permanent. The total costs consist of three parts: total infrastructure costs, total material handling costs and environmental risk costs. The infrastructure-related costs are dependent only on the specific fixed costs and the specific unit costs of the operation points (collection, pre-treatment, treatment, recycling and reuse plants). The costs of warehousing and transportation are represented by the material handling related costs. The most important factors determining the level of environmental risk cost are the number of out of time recycled (treated or reused) products, the number of supply chain objects and the length of transportation routes. The objective function is the minimization of the total cost taking into consideration the constraints. However a lot of research work discussed the design of supply chain [8], but most of them concentrate on linear cost functions. In the case of this model non-linear cost functions were used. The non-linear cost functions and the possible high number of objects of the inverse supply chain leaded to the problem of choosing a
A modified genetic algorithm with fuzzy roulette wheel selection for job-shop scheduling problems
NASA Astrophysics Data System (ADS)
Thammano, Arit; Teekeng, Wannaporn
2015-05-01
The job-shop scheduling problem is one of the most difficult production planning problems. Since it is in the NP-hard class, a recent trend in solving the job-shop scheduling problem is shifting towards the use of heuristic and metaheuristic algorithms. This paper proposes a novel metaheuristic algorithm, which is a modification of the genetic algorithm. This proposed algorithm introduces two new concepts to the standard genetic algorithm: (1) fuzzy roulette wheel selection and (2) the mutation operation with tabu list. The proposed algorithm has been evaluated and compared with several state-of-the-art algorithms in the literature. The experimental results on 53 JSSPs show that the proposed algorithm is very effective in solving the combinatorial optimization problems. It outperforms all state-of-the-art algorithms on all benchmark problems in terms of the ability to achieve the optimal solution and the computational time.
Genetic algorithms applied to nonlinear and complex domains
Barash, Danny
1999-06-01
The dissertation, titled ''Genetic Algorithms Applied to Nonlinear and Complex Domains'', describes and then applies a new class of powerful search algorithms (GAS) to certain domains. GAS are capable of solving complex and nonlinear problems where many parameters interact to produce a ''final'' result such as the optimization of the laser pulse in the interaction of an atom with an intense laser field. GAS can very efficiently locate the global maximum by searching parameter space in problems which are unsuitable for a search using traditional methods. In particular, the dissertation contains new scientific findings in two areas. First, the dissertation examines the interaction of an ultra-intense short laser pulse with atoms. GAS are used to find the optimal frequency for stabilizing atoms in the ionization process. This leads to a new theoretical formulation, to explain what is happening during the ionization process and how the electron is responding to finite (real-life) laser pulse shapes. It is shown that the dynamics of the process can be very sensitive to the ramp of the pulse at high frequencies. The new theory which is formulated, also uses a novel concept (known as the (t,t') method) to numerically solve the time-dependent Schrodinger equation Second, the dissertation also examines the use of GAS in modeling decision making problems. It compares GAS with traditional techniques to solve a class of problems known as Markov Decision Processes. The conclusion of the dissertation should give a clear idea of where GAS are applicable, especially in the physical sciences, in problems which are nonlinear and complex, i.e. difficult to analyze by other means.
Genetic algorithms applied to nonlinear and complex domains
Barash, Danny
1999-06-01
The dissertation, titled ''Genetic Algorithms Applied to Nonlinear and Complex Domains'', describes and then applies a new class of powerful search algorithms (GAS) to certain domains. GAS are capable of solving complex and nonlinear problems where many parameters interact to produce a final result such as the optimization of the laser pulse in the interaction of an atom with an intense laser field. GAS can very efficiently locate the global maximum by searching parameter space in problems which are unsuitable for a search using traditional methods. In particular, the dissertation contains new scientific findings in two areas. First, the dissertation examines the interaction of an ultra-intense short laser pulse with atoms. GAS are used to find the optimal frequency for stabilizing atoms in the ionization process. This leads to a new theoretical formulation, to explain what is happening during the ionization process and how the electron is responding to finite (real-life) laser pulse shapes. It is shown that the dynamics of the process can be very sensitive to the ramp of the pulse at high frequencies. The new theory which is formulated, also uses a novel concept (known as the (t,t') method) to numerically solve the time-dependent Schrodinger equation Second, the dissertation also examines the use of GAS in modeling decision making problems. It compares GAS with traditional techniques to solve a class of problems known as Markov Decision Processes. The conclusion of the dissertation should give a clear idea of where GAS are applicable, especially in the physical sciences, in problems which are nonlinear and complex, i.e. difficult to analyze by other means.
An air traffic flow management method based on mixed genetic algorithms
NASA Astrophysics Data System (ADS)
Fu, Ying
2009-12-01
With the air traffic congest problem becoming more and more severe, the study of air traffic flow management is more and more important. According to the character of air traffic flow management, the author analyzed the heuristic method and genetic algorithms, later put this two method together and give a new method of air traffic flow management-mixture genetic algorithms, It has global convergence, the simulation result demonstrates that the presented algorithm is effective.
Aerodynamic Shape Optimization Using A Real-Number-Encoded Genetic Algorithm
NASA Technical Reports Server (NTRS)
Holst, Terry L.; Pulliam, Thomas H.
2001-01-01
A new method for aerodynamic shape optimization using a genetic algorithm with real number encoding is presented. The algorithm is used to optimize three different problems, a simple hill climbing problem, a quasi-one-dimensional nozzle problem using an Euler equation solver and a three-dimensional transonic wing problem using a nonlinear potential solver. Results indicate that the genetic algorithm is easy to implement and extremely reliable, being relatively insensitive to design space noise.
Binocular self-calibration performed via adaptive genetic algorithm based on laser line imaging
NASA Astrophysics Data System (ADS)
Apolinar Muñoz Rodríguez, J.; Mejía Alanís, Francisco Carlos
2016-07-01
An accurate technique to perform binocular self-calibration by means of an adaptive genetic algorithm based on a laser line is presented. In this calibration, the genetic algorithm computes the vision parameters through simulated binary crossover (SBX). To carry it out, the genetic algorithm constructs an objective function from the binocular geometry of the laser line projection. Then, the SBX minimizes the objective function via chromosomes recombination. In this algorithm, the adaptive procedure determines the search space via line position to obtain the minimum convergence. Thus, the chromosomes of vision parameters provide the minimization. The approach of the proposed adaptive genetic algorithm is to calibrate and recalibrate the binocular setup without references and physical measurements. This procedure leads to improve the traditional genetic algorithms, which calibrate the vision parameters by means of references and an unknown search space. It is because the proposed adaptive algorithm avoids errors produced by the missing of references. Additionally, the three-dimensional vision is carried out based on the laser line position and vision parameters. The contribution of the proposed algorithm is corroborated by an evaluation of accuracy of binocular calibration, which is performed via traditional genetic algorithms.
Improved interpretation of satellite altimeter data using genetic algorithms
NASA Technical Reports Server (NTRS)
Messa, Kenneth; Lybanon, Matthew
1992-01-01
Genetic algorithms (GA) are optimization techniques that are based on the mechanics of evolution and natural selection. They take advantage of the power of cumulative selection, in which successive incremental improvements in a solution structure become the basis for continued development. A GA is an iterative procedure that maintains a 'population' of 'organisms' (candidate solutions). Through successive 'generations' (iterations) the population as a whole improves in simulation of Darwin's 'survival of the fittest'. GA's have been shown to be successful where noise significantly reduces the ability of other search techniques to work effectively. Satellite altimetry provides useful information about oceanographic phenomena. It provides rapid global coverage of the oceans and is not as severely hampered by cloud cover as infrared imagery. Despite these and other benefits, several factors lead to significant difficulty in interpretation. The GA approach to the improved interpretation of satellite data involves the representation of the ocean surface model as a string of parameters or coefficients from the model. The GA searches in parallel, a population of such representations (organisms) to obtain the individual that is best suited to 'survive', that is, the fittest as measured with respect to some 'fitness' function. The fittest organism is the one that best represents the ocean surface model with respect to the altimeter data.
Feature selection using genetic algorithms for fetal heart rate analysis.
Xu, Liang; Redman, Christopher W G; Payne, Stephen J; Georgieva, Antoniya
2014-07-01
The fetal heart rate (FHR) is monitored on a paper strip (cardiotocogram) during labour to assess fetal health. If necessary, clinicians can intervene and assist with a prompt delivery of the baby. Data-driven computerized FHR analysis could help clinicians in the decision-making process. However, selecting the best computerized FHR features that relate to labour outcome is a pressing research problem. The objective of this study is to apply genetic algorithms (GA) as a feature selection method to select the best feature subset from 64 FHR features and to integrate these best features to recognize unfavourable FHR patterns. The GA was trained on 404 cases and tested on 106 cases (both balanced datasets) using three classifiers, respectively. Regularization methods and backward selection were used to optimize the GA. Reasonable classification performance is shown on the testing set for the best feature subset (Cohen's kappa values of 0.45 to 0.49 using different classifiers). This is, to our knowledge, the first time that a feature selection method for FHR analysis has been developed on a database of this size. This study indicates that different FHR features, when integrated, can show good performance in predicting labour outcome. It also gives the importance of each feature, which will be a valuable reference point for further studies.
Genetic algorithms for terrain categorization of Landsat images
NASA Astrophysics Data System (ADS)
Larch, David E.
1994-07-01
We have developed a method that uses genetic algorithms (GAs) to optimize rules for categorizing the terrain in Landsat data. A rule has two parts: a left side (the 'if' clause) and a right side (the 'then' clause). When the 'if' clause is true, the functions in the 'then' clause are executed to process the Landsat data. Examples of functions for processing the data include pixel by pixel threshold and a linear combination of six bands. Optimized rules are used to identify different terrain categories within Landsat data. Optimization is performed by comparing the results of the rules with ground truth using an objective function which minimizes the number of false positive and false negative pixel labels. Those rules that generate results close to the ground truth (those rules that return a small number of false positive and false negative pixel identifications) are highly rewarded and are used to create the next generation of rules. High altitude photographs were used as ground truth. The GA produced promising results for terrain categorization when compared with results from a maximum likelihood classifier. More work in the area of terrain categroization is planned to build on these promising results.
Aerodynamics Design and Genetic Algorithms for Optimization of Airship Bodies
NASA Astrophysics Data System (ADS)
Nejati, Vahid; Matsuuchi, Kazuo
A special and effective aerodynamics calculation method has been applied for the flow field around a body of revolution to find the drag coefficient for a wide range of Reynolds numbers. The body profile is described by a first order continuous axial singularity distribution. The solution of the direct problem then gives the radius and inviscid velocity distribution. Viscous effects are considered by means of an integral boundary layer procedure, and for determination of the transition location the forced transition criterion is applied. By avoiding those profiles, which result in the separation of the boundary layer, the drag can be calculated at the end of the body by using Young's formula. In this study, a powerful optimization procedure known as a Genetic Algorithms (GA) is used for the first time in the shape optimization of airship hulls. GA represents a particular artificial intelligence technique for large spaces, striking a remarkable balance between exploration and exploitation of search space. This method could reach to minimum objective function through a better path, and also could minimize the drag coefficient faster for different Reynolds number regimes. It was found that GA is a powerful method for such multi-dimensional, multi-modal and nonlinear objective function.
Genetic Algorithm Optimized Triply Compensated Pulses in NMR Spectroscopy
Manu, V. S.; Veglia, Gianluigi
2015-01-01
Sensitivity and resolution in NMR experiments are affected by magnetic field inhomogeneities (of both external and RF), errors in pulse calibration, and offset effects due to finite length of RF pulses. To remedy these problems, built-in compensation mechanisms for these experimental imperfections are often necessary. Here, we propose a new family of phase-modulated constant-amplitude broadband pulses with high compensation for RF inhomogeneity and heteronuclear coupling evolution. These pulses were optimized using a genetic algorithm (GA), which consists in a global optimization method inspired by Nature’s evolutionary processes. The newly designed π and π/2 pulses belong to the ‘Type A’ (or general rotors) symmetric composite pulses. These GA-optimized pulses are relatively short compared to other general rotors and can be used for excitation and inversion, as well as refocusing pulses in spin-echo experiments. The performance of the GA-optimized pulses was assessed in Magic Angle Spinning (MAS) solid-state NMR experiments using a crystalline U – 13C, 15N NAVL peptide as well as U – 13C, 15N microcrystalline ubiquitin. GA optimization of NMR pulse sequences opens a window for improving current experiments and designing new robust pulse sequences. PMID:26473327
Genetic algorithm optimized triply compensated pulses in NMR spectroscopy.
Manu, V S; Veglia, Gianluigi
2015-11-01
Sensitivity and resolution in NMR experiments are affected by magnetic field inhomogeneities (of both external and RF), errors in pulse calibration, and offset effects due to finite length of RF pulses. To remedy these problems, built-in compensation mechanisms for these experimental imperfections are often necessary. Here, we propose a new family of phase-modulated constant-amplitude broadband pulses with high compensation for RF inhomogeneity and heteronuclear coupling evolution. These pulses were optimized using a genetic algorithm (GA), which consists in a global optimization method inspired by Nature's evolutionary processes. The newly designed π and π/2 pulses belong to the 'type A' (or general rotors) symmetric composite pulses. These GA-optimized pulses are relatively short compared to other general rotors and can be used for excitation and inversion, as well as refocusing pulses in spin-echo experiments. The performance of the GA-optimized pulses was assessed in Magic Angle Spinning (MAS) solid-state NMR experiments using a crystalline U-(13)C, (15)N NAVL peptide as well as U-(13)C, (15)N microcrystalline ubiquitin. GA optimization of NMR pulse sequences opens a window for improving current experiments and designing new robust pulse sequences.
Coil optimization for electromagnetic levitation using a genetic like algorithm
NASA Astrophysics Data System (ADS)
Royer, Z. L.; Tackes, C.; LeSar, R.; Napolitano, R. E.
2013-06-01
The technique of electromagnetic levitation (EML) provides a means for thermally processing an electrically conductive specimen in a containerless manner. For the investigation of metallic liquids and related melting or freezing transformations, the elimination of substrate-induced nucleation affords access to much higher undercooling than otherwise attainable. With heating and levitation both arising from the currents induced by the coil, the performance of any EML system depends on controlling the balance between lifting forces and heating effects, as influenced by the levitation coil geometry. In this work, a genetic algorithm is developed and utilized to optimize the design of electromagnetic levitation coils. The optimization is targeted specifically to reduce the steady-state temperature of the stably levitated metallic specimen. Reductions in temperature of nominally 70 K relative to that obtained with the initial design are achieved through coil optimization, and the results are compared with experiments for aluminum. Additionally, the optimization method is shown to be robust, generating a small range of converged results from a variety of initial starting conditions. While our optimization criterion was set to achieve the lowest possible sample temperature, the method is general and can be used to optimize for other criteria as well.
Atrial cell action potential parameter fitting using genetic algorithms.
Syed, Z; Vigmond, E; Nattel, S; Leon, L J
2005-09-01
Understanding of the considerable variation in action potential (AP) shape throughout the heart is necessary to explain normal and pathological cardiac function. Existing mathematical models reproduce typical APs, but not all measured APs, as fitting the sets of non-linear equations is a tedious process. The study describes the integration of a pre-existing mathematical model of an atrial cell AP with a genetic algorithm to provide an automated tool to generate APs for arbitrary cells by fitting ionic channel conductances. Using the Nygren model as the base, the technique was first verified by starting with random values and fitting the Nygren model to itself with an error of only 0.03%. The Courtemanche model, which has a different morphology from that of the Nygren model, was successfully fitted. The AP duration restitution curve generated by the fit matched that of the target model very well. Finally, experimentally recorded APs were reproduced. To match AP duration restitution behaviour properly, it was necessary simultaneously to fit over several stimulation frequencies. Also, fitting of the upstroke was better if the stimulating current pulse replicated that found in situ as opposed to a rectangular pulse. In conclusion, the modelled parameters were successfully able to reproduce any given atrial AP. This tool can be useful for determining parameters in new AP models, reproducing specific APs, as well as determining the locus of drug action by examining changes in conductance values.
Improved satellite image compression and reconstruction via genetic algorithms
NASA Astrophysics Data System (ADS)
Babb, Brendan; Moore, Frank; Peterson, Michael; Lamont, Gary
2008-10-01
A wide variety of signal and image processing applications, including the US Federal Bureau of Investigation's fingerprint compression standard [3] and the JPEG-2000 image compression standard [26], utilize wavelets. This paper describes new research that demonstrates how a genetic algorithm (GA) may be used to evolve transforms that outperform wavelets for satellite image compression and reconstruction under conditions subject to quantization error. The new approach builds upon prior work by simultaneously evolving real-valued coefficients representing matched forward and inverse transform pairs at each of three levels of a multi-resolution analysis (MRA) transform. The training data for this investigation consists of actual satellite photographs of strategic urban areas. Test results show that a dramatic reduction in the error present in reconstructed satellite images may be achieved without sacrificing the compression capabilities of the forward transform. The transforms evolved during this research outperform previous start-of-the-art solutions, which optimized coefficients for the reconstruction transform only. These transforms also outperform wavelets, reducing error by more than 0.76 dB at a quantization level of 64. In addition, transforms trained using representative satellite images do not perform quite as well when subsequently tested against images from other classes (such as fingerprints or portraits). This result suggests that the GA developed for this research is automatically learning to exploit specific attributes common to the class of images represented in the training population.
Optimum detailed design of reinforced concrete frames using genetic algorithms
NASA Astrophysics Data System (ADS)
Govindaraj, V.; Ramasamy, J. V.
2007-06-01
This article presents the application of the genetic algorithm to the optimum detailed design of reinforced concrete frames based on Indian Standard specifications. The objective function is the total cost of the frame which includes the cost of concrete, formwork and reinforcing steel for individual members of the frame. In order for the optimum design to be directly constructible without any further modifications, aspects such as available standard reinforcement bar diameters, spacing requirements of reinforcing bars, modular sizes of members, architectural requirements on member sizes and other practical requirements in addition to relevant codal provisions are incorporated into the optimum design model. The produced optimum design satisfies the strength, serviceability, ductility, durability and other constraints related to good design and detailing practice. The detailing of reinforcements in the beam members is carried out as a sub-level optimization problem. This strategy helps to reduce the size of the optimization problem and saves computational time. The proposed method is demonstrated through several example problems and the optimum results obtained are compared with those in the available literature. It is concluded that the proposed optimum design model can be adopted in design offices as it yields rational, reliable, economical, time-saving and practical designs.
Innovative applications of genetic algorithms to problems in accelerator physics
NASA Astrophysics Data System (ADS)
Hofler, Alicia; Terzić, Balša; Kramer, Matthew; Zvezdin, Anton; Morozov, Vasiliy; Roblin, Yves; Lin, Fanglei; Jarvis, Colin
2013-01-01
The genetic algorithm (GA) is a powerful technique that implements the principles nature uses in biological evolution to optimize a multidimensional nonlinear problem. The GA works especially well for problems with a large number of local extrema, where traditional methods (such as conjugate gradient, steepest descent, and others) fail or, at best, underperform. The field of accelerator physics, among others, abounds with problems which lend themselves to optimization via GAs. In this paper, we report on the successful application of GAs in several problems related to the existing Continuous Electron Beam Accelerator Facility nuclear physics machine, the proposed Medium-energy Electron-Ion Collider at Jefferson Lab, and a radio frequency gun-based injector. These encouraging results are a step forward in optimizing accelerator design and provide an impetus for application of GAs to other problems in the field. To that end, we discuss the details of the GAs used, include a newly devised enhancement which leads to improved convergence to the optimum, and make recommendations for future GA developments and accelerator applications.
The Adaptive Analysis of Visual Cognition using Genetic Algorithms
Cook, Robert G.; Qadri, Muhammad A. J.
2014-01-01
Two experiments used a novel, open-ended, and adaptive test procedure to examine visual cognition in animals. Using a genetic algorithm, a pigeon was tested repeatedly from a variety of different initial conditions for its solution to an intermediate brightness search task. On each trial, the animal had to accurately locate and peck a target element of intermediate brightness from among a variable number of surrounding darker and lighter distractor elements. Displays were generated from six parametric variables, or genes (distractor number, element size, shape, spacing, target brightness, distractor brightness). Display composition changed over time, or evolved, as a function of the bird’s differential accuracy within the population of values for each gene. Testing three randomized initial conditions and one set of controlled initial conditions, element size and number of distractors were identified as the most important factors controlling search accuracy, with distractor brightness, element shape, and spacing making secondary contributions. The resulting changes in this multidimensional stimulus space suggested the existence of a set of conditions that the bird repeatedly converged upon regardless of initial conditions. This psychological “attractor” represents the cumulative action of the cognitive operations used by the pigeon in solving and performing this search task. The results are discussed regarding their implications for visual cognition in pigeons and the usefulness of adaptive, subject-driven experimentation for investigating human and animal cognition more generally. PMID:24000905
An efficient genetic algorithm for structure prediction at the nanoscale.
Lazauskas, Tomas; Sokol, Alexey A; Woodley, Scott M
2017-03-17
We have developed and implemented a new global optimization technique based on a Lamarckian genetic algorithm with the focus on structure diversity. The key process in the efficient search on a given complex energy landscape proves to be the removal of duplicates that is achieved using a topological analysis of candidate structures. The careful geometrical prescreening of newly formed structures and the introduction of new mutation move classes improve the rate of success further. The power of the developed technique, implemented in the Knowledge Led Master Code, or KLMC, is demonstrated by its ability to locate and explore a challenging double funnel landscape of a Lennard-Jones 38 atom system (LJ38). We apply the redeveloped KLMC to investigate three chemically different systems: ionic semiconductor (ZnO)1-32, metallic Ni13 and covalently bonded C60. All four systems have been systematically explored on the energy landscape defined using interatomic potentials. The new developments allowed us to successfully locate the double funnels of LJ38, find new local and global minima for ZnO clusters, extensively explore the Ni13 and C60 (the buckminsterfullerene, or buckyball) potential energy surfaces.
Genetic algorithm reveals energy-efficient waveforms for neural stimulation.
Wongsarnpigoon, Amorn; Grill, Warren M
2009-01-01
Energy consumption is an important consideration for battery-powered implantable stimulators. We used a genetic algorithm (GA) that mimics biological evolution to determine the energy-optimal waveform shape for neural stimulation. The GA was coupled to NEURON using a model of extracellular stimulation of a mammalian myelinated axon. Stimulation waveforms represented the organisms of a population, and each waveform's shape was encoded into genes. The fitness of each waveform was based on its energy efficiency and ability to elicit an action potential. After each generation of the GA, waveforms mated to produce offspring waveforms, and a new population was formed consisting of the offspring and the fittest waveforms of the previous generation. Over the course of the GA, waveforms became increasingly energy-efficient and converged upon a highly energy-efficient shape. The resulting waveforms resembled truncated normal curves or sinusoids and were 3-74% more energy-efficient than several waveform shapes commonly used in neural stimulation. If implemented in implantable neural stimulators, the GA optimized waveforms could prolong battery life, thereby reducing the costs and risks of battery-replacement surgery.
Genetic Algorithm Reveals Energy-Efficient Waveforms for Neural Stimulation
Wongsarnpigoon, Amorn; Grill, Warren M.
2013-01-01
Energy consumption is an important consideration for battery-powered implantable stimulators. We used a genetic algorithm (GA) that mimics biological evolution to determine the energy-optimal waveform shape for neural stimulation. The GA was coupled to NEURON using a model of extracellular stimulation of a mammalian myelinated axon. Stimulation waveforms represented the organisms of a population, and each waveform’s shape was encoded into genes. The fitness of each waveform was based on its energy efficiency and ability to elicit an action potential. After each generation of the GA, waveforms mated to produce offspring waveforms, and a new population was formed consisting of the offspring and the fittest waveforms of the previous generation. Over the course of the GA, waveforms became increasingly energy-efficient and converged upon a highly energy-efficient shape. The resulting waveforms resembled truncated normal curves or sinusoids and were 3–74% more energy-efficient than several waveform shapes commonly used in neural stimulation. If implemented in implantable neural stimulators, the GA optimized waveforms could prolong battery life, thereby reducing the costs and risks of battery-replacement surgery. PMID:19964233
Toward Developing Genetic Algorithms to Aid in Critical Infrastructure Modeling
Not Available
2007-05-01
Today’s society relies upon an array of complex national and international infrastructure networks such as transportation, telecommunication, financial and energy. Understanding these interdependencies is necessary in order to protect our critical infrastructure. The Critical Infrastructure Modeling System, CIMS©, examines the interrelationships between infrastructure networks. CIMS© development is sponsored by the National Security Division at the Idaho National Laboratory (INL) in its ongoing mission for providing critical infrastructure protection and preparedness. A genetic algorithm (GA) is an optimization technique based on Darwin’s theory of evolution. A GA can be coupled with CIMS© to search for optimum ways to protect infrastructure assets. This includes identifying optimum assets to enforce or protect, testing the addition of or change to infrastructure before implementation, or finding the optimum response to an emergency for response planning. This paper describes the addition of a GA to infrastructure modeling for infrastructure planning. It first introduces the CIMS© infrastructure modeling software used as the modeling engine to support the GA. Next, the GA techniques and parameters are defined. Then a test scenario illustrates the integration with CIMS© and the preliminary results.
Optimizing SRF Gun Cavity Profiles in a Genetic Algorithm Framework
Alicia Hofler, Pavel Evtushenko, Frank Marhauser
2009-09-01
Automation of DC photoinjector designs using a genetic algorithm (GA) based optimization is an accepted practice in accelerator physics. Allowing the gun cavity field profile shape to be varied can extend the utility of this optimization methodology to superconducting and normal conducting radio frequency (SRF/RF) gun based injectors. Finding optimal field and cavity geometry configurations can provide guidance for cavity design choices and verify existing designs. We have considered two approaches for varying the electric field profile. The first is to determine the optimal field profile shape that should be used independent of the cavity geometry, and the other is to vary the geometry of the gun cavity structure to produce an optimal field profile. The first method can provide a theoretical optimal and can illuminate where possible gains can be made in field shaping. The second method can produce more realistically achievable designs that can be compared to existing designs. In this paper, we discuss the design and implementation for these two methods for generating field profiles for SRF/RF guns in a GA based injector optimization scheme and provide preliminary results.
Optimization on robot arm machining by using genetic algorithms
NASA Astrophysics Data System (ADS)
Liu, Tung-Kuan; Chen, Chiu-Hung; Tsai, Shang-En
2007-12-01
In this study, an optimization problem on the robot arm machining is formulated and solved by using genetic algorithms (GAs). The proposed approach adopts direct kinematics model and utilizes GA's global search ability to find the optimum solution. The direct kinematics equations of the robot arm are formulated and can be used to compute the end-effector coordinates. Based on these, the objective of optimum machining along a set of points can be evolutionarily evaluated with the distance between machining points and end-effector positions. Besides, a 3D CAD application, CATIA, is used to build up the 3D models of the robot arm, work-pieces and their components. A simulated experiment in CATIA is used to verify the computation results first and a practical control on the robot arm through the RS232 port is also performed. From the results, this approach is proved to be robust and can be suitable for most machining needs when robot arms are adopted as the machining tools.
Improvement of unsupervised texture classification based on genetic algorithms
NASA Astrophysics Data System (ADS)
Okumura, Hiroshi; Togami, Yuuki; Arai, Kohei
2004-11-01
At the previous conference, the authors are proposed a new unsupervised texture classification method based on the genetic algorithms (GA). In the method, the GA are employed to determine location and size of the typical textures in the target image. The proposed method consists of the following procedures: 1) the determination of the number of classification category; 2) each chromosome used in the GA consists of coordinates of center pixel of each training area candidate and those size; 3) 50 chromosomes are generated using random number; 4) fitness of each chromosome is calculated; the fitness is the product of the Classification Reliability in the Mixed Texture Cases (CRMTC) and the Stability of NZMV against Scanning Field of View Size (SNSFS); 5) in the selection operation in the GA, the elite preservation strategy is employed; 6) in the crossover operation, multi point crossover is employed and two parent chromosomes are selected by the roulette strategy; 7) in mutation operation, the locuses where the bit inverting occurs are decided by a mutation rate; 8) go to the procedure 4. However, this method has not been automated because it requires not only target image but also the number of categories for classification. In this paper, we describe some improvement for implementation of automated texture classification. Some experiments are conducted to evaluate classification capability of the proposed method by using images from Brodatz's photo album and actual airborne multispectral scanner. The experimental results show that the proposed method can select appropriate texture samples and can provide reasonable classification results.
A Moving Target Environment for Computer Configurations Using Genetic Algorithms
Crouse, Michael; Fulp, Errin W.
2011-10-31
Moving Target (MT) environments for computer systems provide security through diversity by changing various system properties that are explicitly defined in the computer configuration. Temporal diversity can be achieved by making periodic configuration changes; however in an infrastructure of multiple similarly purposed computers diversity must also be spatial, ensuring multiple computers do not simultaneously share the same configuration and potential vulnerabilities. Given the number of possible changes and their potential interdependencies discovering computer configurations that are secure, functional, and diverse is challenging. This paper describes how a Genetic Algorithm (GA) can be employed to find temporally and spatially diverse secure computer configurations. In the proposed approach a computer configuration is modeled as a chromosome, where an individual configuration setting is a trait or allele. The GA operates by combining multiple chromosomes (configurations) which are tested for feasibility and ranked based on performance which will be measured as resistance to attack. The result of successive iterations of the GA are secure configurations that are diverse due to the crossover and mutation processes. Simulations results will demonstrate this approach can provide at MT environment for a large infrastructure of similarly purposed computers by discovering temporally and spatially diverse secure configurations.
Track gauge optimisation of railway switches using a genetic algorithm
NASA Astrophysics Data System (ADS)
Pålsson, Björn A.; Nielsen, Jens C. O.
2012-01-01
A methodology for the optimisation of a prescribed track gauge variation (gauge widening) in the switch panel of a railway turnout (switch and crossing, S&C) is presented. The aim is to reduce rail profile degradation. A holistic approach is applied, where both routes and travel directions (moves) of traffic in the switch panel are considered simultaneously. The problem is formulated as a multi-objective minimisation problem which is solved using a genetic-type optimisation algorithm which provides a set of Pareto optimal solutions. The dynamic vehicle-turnout interaction is evaluated using a multi-body simulation tool and the energy dissipation in the wheel-rail contacts is used for the assessment of gauge parameters. Two different vehicle models are used, one freight car and one passenger train set, and a stochastic spread in wheel profile and wheel-rail friction coefficient is accounted for. It is found that gauge configurations with a large gauge-widening amplitude for the stock rail on the field side are optimal for both the through and diverging routes, while the results for the gauge side show a larger route dependence. The optimal gauge configurations are observed to be similar for both vehicle types.
Shape: automatic conformation prediction of carbohydrates using a genetic algorithm
2009-01-01
Background Detailed experimental three dimensional structures of carbohydrates are often difficult to acquire. Molecular modelling and computational conformation prediction are therefore commonly used tools for three dimensional structure studies. Modelling procedures generally require significant training and computing resources, which is often impractical for most experimental chemists and biologists. Shape has been developed to improve the availability of modelling in this field. Results The Shape software package has been developed for simplicity of use and conformation prediction performance. A trivial user interface coupled to an efficient genetic algorithm conformation search makes it a powerful tool for automated modelling. Carbohydrates up to a few hundred atoms in size can be investigated on common computer hardware. It has been shown to perform well for the prediction of over four hundred bioactive oligosaccharides, as well as compare favourably with previously published studies on carbohydrate conformation prediction. Conclusion The Shape fully automated conformation prediction can be used by scientists who lack significant modelling training, and performs well on computing hardware such as laptops and desktops. It can also be deployed on computer clusters for increased capacity. The prediction accuracy under the default settings is good, as it agrees well with experimental data and previously published conformation prediction studies. This software is available both as open source and under commercial licenses. PMID:20298520
An algorithm for the solution of dynamic linear programs
NASA Technical Reports Server (NTRS)
Psiaki, Mark L.
1989-01-01
The algorithm's objective is to efficiently solve Dynamic Linear Programs (DLP) by taking advantage of their special staircase structure. This algorithm constitutes a stepping stone to an improved algorithm for solving Dynamic Quadratic Programs, which, in turn, would make the nonlinear programming method of Successive Quadratic Programs more practical for solving trajectory optimization problems. The ultimate goal is to being trajectory optimization solution speeds into the realm of real-time control. The algorithm exploits the staircase nature of the large constraint matrix of the equality-constrained DLPs encountered when solving inequality-constrained DLPs by an active set approach. A numerically-stable, staircase QL factorization of the staircase constraint matrix is carried out starting from its last rows and columns. The resulting recursion is like the time-varying Riccati equation from multi-stage LQR theory. The resulting factorization increases the efficiency of all of the typical LP solution operations over that of a dense matrix LP code. At the same time numerical stability is ensured. The algorithm also takes advantage of dynamic programming ideas about the cost-to-go by relaxing active pseudo constraints in a backwards sweeping process. This further decreases the cost per update of the LP rank-1 updating procedure, although it may result in more changes of the active set that if pseudo constraints were relaxed in a non-stagewise fashion. The usual stability of closed-loop Linear/Quadratic optimally-controlled systems, if it carries over to strictly linear cost functions, implies that the saving due to reduced factor update effort may outweigh the cost of an increased number of updates. An aerospace example is presented in which a ground-to-ground rocket's distance is maximized. This example demonstrates the applicability of this class of algorithms to aerospace guidance. It also sheds light on the efficacy of the proposed pseudo constraint relaxation
Genetic algorithms with memory- and elitism-based immigrants in dynamic environments.
Yang, Shengxiang
2008-01-01
In recent years the genetic algorithm community has shown a growing interest in studying dynamic optimization problems. Several approaches have been devised. The random immigrants and memory schemes are two major ones. The random immigrants scheme addresses dynamic environments by maintaining the population diversity while the memory scheme aims to adapt genetic algorithms quickly to new environments by reusing historical information. This paper investigates a hybrid memory and random immigrants scheme, called memory-based immigrants, and a hybrid elitism and random immigrants scheme, called elitism-based immigrants, for genetic algorithms in dynamic environments. In these schemes, the best individual from memory or the elite from the previous generation is retrieved as the base to create immigrants into the population by mutation. This way, not only can diversity be maintained but it is done more efficiently to adapt genetic algorithms to the current environment. Based on a series of systematically constructed dynamic problems, experiments are carried out to compare genetic algorithms with the memory-based and elitism-based immigrants schemes against genetic algorithms with traditional memory and random immigrants schemes and a hybrid memory and multi-population scheme. The sensitivity analysis regarding some key parameters is also carried out. Experimental results show that the memory-based and elitism-based immigrants schemes efficiently improve the performance of genetic algorithms in dynamic environments.
Guo, Wensheng; Yang, Guowu; Wu, Wei; He, Lei; Sun, Mingyu
2014-01-01
In biological systems, the dynamic analysis method has gained increasing attention in the past decade. The Boolean network is the most common model of a genetic regulatory network. The interactions of activation and inhibition in the genetic regulatory network are modeled as a set of functions of the Boolean network, while the state transitions in the Boolean network reflect the dynamic property of a genetic regulatory network. A difficult problem for state transition analysis is the finding of attractors. In this paper, we modeled the genetic regulatory network as a Boolean network and proposed a solving algorithm to tackle the attractor finding problem. In the proposed algorithm, we partitioned the Boolean network into several blocks consisting of the strongly connected components according to their gradients, and defined the connection between blocks as decision node. Based on the solutions calculated on the decision nodes and using a satisfiability solving algorithm, we identified the attractors in the state transition graph of each block. The proposed algorithm is benchmarked on a variety of genetic regulatory networks. Compared with existing algorithms, it achieved similar performance on small test cases, and outperformed it on larger and more complex ones, which happens to be the trend of the modern genetic regulatory network. Furthermore, while the existing satisfiability-based algorithms cannot be parallelized due to their inherent algorithm design, the proposed algorithm exhibits a good scalability on parallel computing architectures. PMID:24718686
Guo, Wensheng; Yang, Guowu; Wu, Wei; He, Lei; Sun, Mingyu
2014-01-01
In biological systems, the dynamic analysis method has gained increasing attention in the past decade. The Boolean network is the most common model of a genetic regulatory network. The interactions of activation and inhibition in the genetic regulatory network are modeled as a set of functions of the Boolean network, while the state transitions in the Boolean network reflect the dynamic property of a genetic regulatory network. A difficult problem for state transition analysis is the finding of attractors. In this paper, we modeled the genetic regulatory network as a Boolean network and proposed a solving algorithm to tackle the attractor finding problem. In the proposed algorithm, we partitioned the Boolean network into several blocks consisting of the strongly connected components according to their gradients, and defined the connection between blocks as decision node. Based on the solutions calculated on the decision nodes and using a satisfiability solving algorithm, we identified the attractors in the state transition graph of each block. The proposed algorithm is benchmarked on a variety of genetic regulatory networks. Compared with existing algorithms, it achieved similar performance on small test cases, and outperformed it on larger and more complex ones, which happens to be the trend of the modern genetic regulatory network. Furthermore, while the existing satisfiability-based algorithms cannot be parallelized due to their inherent algorithm design, the proposed algorithm exhibits a good scalability on parallel computing architectures.
In-Space Radiator Shape Optimization using Genetic Algorithms
NASA Technical Reports Server (NTRS)
Hull, Patrick V.; Kittredge, Ken; Tinker, Michael; SanSoucie, Michael
2006-01-01
Future space exploration missions will require the development of more advanced in-space radiators. These radiators should be highly efficient and lightweight, deployable heat rejection systems. Typical radiators for in-space heat mitigation commonly comprise a substantial portion of the total vehicle mass. A small mass savings of even 5-10% can greatly improve vehicle performance. The objective of this paper is to present the development of detailed tools for the analysis and design of in-space radiators using evolutionary computation techniques. The optimality criterion is defined as a two-dimensional radiator with a shape demonstrating the smallest mass for the greatest overall heat transfer, thus the end result is a set of highly functional radiator designs. This cross-disciplinary work combines topology optimization and thermal analysis design by means of a genetic algorithm The proposed design tool consists of the following steps; design parameterization based on the exterior boundary of the radiator, objective function definition (mass minimization and heat loss maximization), objective function evaluation via finite element analysis (thermal radiation analysis) and optimization based on evolutionary algorithms. The radiator design problem is defined as follows: the input force is a driving temperature and the output reaction is heat loss. Appropriate modeling of the space environment is added to capture its effect on the radiator. The design parameters chosen for this radiator shape optimization problem fall into two classes, variable height along the width of the radiator and a spline curve defining the -material boundary of the radiator. The implementation of multiple design parameter schemes allows the user to have more confidence in the radiator optimization tool upon demonstration of convergence between the two design parameter schemes. This tool easily allows the user to manipulate the driving temperature regions thus permitting detailed design of in
Sensitivity of blackbody effective emissivity to wavelength and temperature: By genetic algorithm
Ejigu, E. K.; Liedberg, H. G.
2013-09-11
A variable-temperature blackbody (VTBB) is used to calibrate an infrared radiation thermometer (pyrometer). The effective emissivity (ε{sub eff}) of a VTBB is dependent on temperature and wavelength other than the geometry of the VTBB. In the calibration process the effective emissivity is often assumed to be constant within the wavelength and temperature range. There are practical situations where the sensitivity of the effective emissivity needs to be known and correction has to be applied. We present a method using a genetic algorithm to investigate the sensitivity of the effective emissivity to wavelength and temperature variation. Two matlab® programs are generated: the first to model the radiance temperature calculation and the second to connect the model to the genetic algorithm optimization toolbox. The effective emissivity parameter is taken as a chromosome and optimized at each wavelength and temperature point. The difference between the contact temperature (reading from a platinum resistance thermometer or liquid in glass thermometer) and radiance temperature (calculated from the ε{sub eff} values) is used as an objective function where merit values are calculated and best fit ε{sub eff} values selected. The best fit ε{sub eff} values obtained as a solution show how sensitive they are to temperature and wavelength parameter variation. Uncertainty components that arise from wavelength and temperature variation are determined based on the sensitivity analysis. Numerical examples are considered for illustration.
Simplified partial digest problem: enumerative and dynamic programming algorithms.
Blazewicz, Jacek; Burke, Edmund; Kasprzak, Marta; Kovalev, Alexandr; Kovalyov, Mikhail
2007-01-01
We study the Simplified Partial Digest Problem (SPDP), which is a mathematical model for a new simplified partial digest method of genome mapping. This method is easy for laboratory implementation and robust with respect to the experimental errors. SPDP is NP-hard in the strong sense. We present an $O(n2;n)$ time enumerative algorithm and an O(n(2q)) time dynamic programming algorithm for the error-free SPDP, where $n$ is the number of restriction sites and n is the number of distinct intersite distances. We also give examples of the problem, in which there are 2(n+2)/(3)-1 non-congruent solutions. These examples partially answer a question recently posed in the literature about the number of solutions of SPDP. We adapt our enumerative algorithm for handling SPDP with imprecise input data. Finally, we describe and discuss the results of the computer experiments with our algorithms.
Search for new red phosphors using genetic algorithm-assisted combinatorial chemistry.
Kulshreshtha, Chandramouli; Sharma, Asish Kumar; Sohn, Kee-Sun
2008-01-01
A genetic algorithm was employed in association with high-throughput synthesis and characterization in an attempt to search for red phosphors with high photoluminescent intensity. A tetravalent manganese-doped alkali earth germanium oxide system, with an emission color close to a desirable deep red, was screened with the assistance of a genetic algorithm to pinpoint the phosphor exhibiting the highest photoluminescence. As the genetic algorithm was in progress, the PL intensity increased and maximized in the fourth generation. The highest and the average PL intensity of the fourth generation improved by 23 and 120%, respectively, compared with that of the first generation.
Yoshimaru, Eriko S; Randtke, Edward A; Pagel, Mark D; Cárdenas-Rodríguez, Julio
2016-02-01
Pulsed Chemical Exchange Saturation Transfer (CEST) MRI experimental parameters and RF saturation pulse shapes were optimized using a multiobjective genetic algorithm. The optimization was carried out for RF saturation duty cycles of 50% and 90%, and results were compared to continuous wave saturation and Gaussian waveform. In both simulation and phantom experiments, continuous wave saturation performed the best, followed by parameters and shapes optimized by the genetic algorithm and then followed by Gaussian waveform. We have successfully demonstrated that the genetic algorithm is able to optimize pulse CEST parameters and that the results are translatable to clinical scanners.
Yoshimaru, Eriko S.; Randtke, Edward A.; Pagel, Mark D.; Cárdenas-Rodríguez, Julio
2016-01-01
Pulsed Chemical Exchange Saturation Transfer (CEST) MRI experimental parameters and RF saturation pulse shapes were optimized using a multiobjective genetic algorithm. The optimization was carried out for RF saturation duty cycles of 50% and 90%, and results were compared to continuous wave saturation and Gaussian waveform. In both simulation and phantom experiments, continuous wave saturation performed the best, followed by parameters and shapes optimized by the genetic algorithm and then followed by Gaussian waveform. We have successfully demonstrated that the genetic algorithm is able to optimize pulse CEST parameters and that the results are translatable to clinical scanners. PMID:26778301
NASA Astrophysics Data System (ADS)
Yoshimaru, Eriko S.; Randtke, Edward A.; Pagel, Mark D.; Cárdenas-Rodríguez, Julio
2016-02-01
Pulsed Chemical Exchange Saturation Transfer (CEST) MRI experimental parameters and RF saturation pulse shapes were optimized using a multiobjective genetic algorithm. The optimization was carried out for RF saturation duty cycles of 50% and 90%, and results were compared to continuous wave saturation and Gaussian waveform. In both simulation and phantom experiments, continuous wave saturation performed the best, followed by parameters and shapes optimized by the genetic algorithm and then followed by Gaussian waveform. We have successfully demonstrated that the genetic algorithm is able to optimize pulse CEST parameters and that the results are translatable to clinical scanners.
Genetics algorithm optimization of DWT-DCT based image Watermarking
NASA Astrophysics Data System (ADS)
Budiman, Gelar; Novamizanti, Ledya; Iwut, Iwan
2017-01-01
Data hiding in an image content is mandatory for setting the ownership of the image. Two dimensions discrete wavelet transform (DWT) and discrete cosine transform (DCT) are proposed as transform method in this paper. First, the host image in RGB color space is converted to selected color space. We also can select the layer where the watermark is embedded. Next, 2D-DWT transforms the selected layer obtaining 4 subband. We select only one subband. And then block-based 2D-DCT transforms the selected subband. Binary-based watermark is embedded on the AC coefficients of each block after zigzag movement and range based pixel selection. Delta parameter replacing pixels in each range represents embedded bit. +Delta represents bit “1” and –delta represents bit “0”. Several parameters to be optimized by Genetics Algorithm (GA) are selected color space, layer, selected subband of DWT decomposition, block size, embedding range, and delta. The result of simulation performs that GA is able to determine the exact parameters obtaining optimum imperceptibility and robustness, in any watermarked image condition, either it is not attacked or attacked. DWT process in DCT based image watermarking optimized by GA has improved the performance of image watermarking. By five attacks: JPEG 50%, resize 50%, histogram equalization, salt-pepper and additive noise with variance 0.01, robustness in the proposed method has reached perfect watermark quality with BER=0. And the watermarked image quality by PSNR parameter is also increased about 5 dB than the watermarked image quality from previous method.
A weight based genetic algorithm for selecting views
NASA Astrophysics Data System (ADS)
Talebian, Seyed H.; Kareem, Sameem A.
2013-03-01
Data warehouse is a technology designed for supporting decision making. Data warehouse is made by extracting large amount of data from different operational systems; transforming it to a consistent form and loading it to the central repository. The type of queries in data warehouse environment differs from those in operational systems. In contrast to operational systems, the analytical queries that are issued in data warehouses involve summarization of large volume of data and therefore in normal circumstance take a long time to be answered. On the other hand, the result of these queries must be answered in a short time to enable managers to make decisions as short time as possible. As a result, an essential need in this environment is in improving the performances of queries. One of the most popular methods to do this task is utilizing pre-computed result of queries. In this method, whenever a new query is submitted by the user instead of calculating the query on the fly through a large underlying database, the pre-computed result or views are used to answer the queries. Although, the ideal option would be pre-computing and saving all possible views, but, in practice due to disk space constraint and overhead due to view updates it is not considered as a feasible choice. Therefore, we need to select a subset of possible views to save on disk. The problem of selecting the right subset of views is considered as an important challenge in data warehousing. In this paper we suggest a Weighted Based Genetic Algorithm (WBGA) for solving the view selection problem with two objectives.
GRAVITATIONAL LENS MODELING WITH GENETIC ALGORITHMS AND PARTICLE SWARM OPTIMIZERS
Rogers, Adam; Fiege, Jason D.
2011-02-01
Strong gravitational lensing of an extended object is described by a mapping from source to image coordinates that is nonlinear and cannot generally be inverted analytically. Determining the structure of the source intensity distribution also requires a description of the blurring effect due to a point-spread function. This initial study uses an iterative gravitational lens modeling scheme based on the semilinear method to determine the linear parameters (source intensity profile) of a strongly lensed system. Our 'matrix-free' approach avoids construction of the lens and blurring operators while retaining the least-squares formulation of the problem. The parameters of an analytical lens model are found through nonlinear optimization by an advanced genetic algorithm (GA) and particle swarm optimizer (PSO). These global optimization routines are designed to explore the parameter space thoroughly, mapping model degeneracies in detail. We develop a novel method that determines the L-curve for each solution automatically, which represents the trade-off between the image {chi}{sup 2} and regularization effects, and allows an estimate of the optimally regularized solution for each lens parameter set. In the final step of the optimization procedure, the lens model with the lowest {chi}{sup 2} is used while the global optimizer solves for the source intensity distribution directly. This allows us to accurately determine the number of degrees of freedom in the problem to facilitate comparison between lens models and enforce positivity on the source profile. In practice, we find that the GA conducts a more thorough search of the parameter space than the PSO.
Double Motor Coordinated Control Based on Hybrid Genetic Algorithm and CMAC
NASA Astrophysics Data System (ADS)
Cao, Shaozhong; Tu, Ji
A novel hybrid cerebellar model articulation controller (CMAC) and online adaptive genetic algorithm (GA) controller is introduced to control two Brushless DC motor (BLDCM) which applied in a biped robot. Genetic Algorithm simulates the random learning among the individuals of a group, and CMAC simulates the self-learning of an individual. To validate the ability and superiority of the novel algorithm, experiments have been done in MATLAB/SIMULINK. Analysis among GA, hybrid GA-CMAC and CMAC feed-forward control is also given. The results prove that the torque ripple of the coordinated control system is eliminated by using the hybrid GA-CMAC algorithm.
Optimal placement of active material actuators using genetic algorithm
NASA Astrophysics Data System (ADS)
Johnson, Terrence; Frecker, Mary I.
2004-07-01
Actuators based on smart materials generally exhibit a tradeoff between force and stroke. Researchers have surrounded piezoelectric materials (PZT"s) with complaint structures to magnify either their geometric or mechanical advantage. Most of these designs are literally built around a particular piezoelectric device, so the design space consists of only the compliant mechanism. Materials scientists researchers have demonstrated the ability to pole a PZT in an arbitrary direction, and some engineers have taken advantage of this to build "shear mode" actuators. The goal of this work is to determine if the performance of compliant mechanisms improves by the inclusion of the piezoelectric polarization as a design variable. The polarization vector is varied via transformation matrixes, and the compliant actuator is modeled using the SIMP (Solid Isotropic Material with Penalization) or "power-law method." The concept of mutual potential energy is used to form an objective function to measure the piezoelectric actuator"s performance. The optimal topology of the compliant mechanism and orientation of the polarization method are determined using a sequential linear programming algorithm. This paper presents a demonstration problem that shows small changes in the polarization vector have a marginal effect on the optimum topology of the mechanism, but improves actuation.
Yoon, C.; Hassan, Y.A.; Ortiz-Villafuerte, J.; Schmidl, W.D.
1996-12-31
Particle Image Velocimetry (PIV) is a nonintrusive measurement technique, which can be used to study the structure of various fluid flows. PIV is a very efficient measurement technique since it can obtain both qualitative and quantitative spatial information about the flow field being studied. This information can be further processed into information such as vorticity and pathlines. Other flow measurement techniques (Laser Doppler Velocimetry, Hot Wire Anemometry, etc...) only provide quantitative information at a single point. A study on the performance of the Sub-Grid Genetic Tracking Algorithm for use in Particle Image Velocimetry was performed. A comparison with other tracking routines as the Cross Correlation, Spring Model and Neural Network tracking techniques was conducted. All four algorithms were used to track with synthetic data, and the results are compared with those obtained from a Large Eddy simulation computational fluid dynamics program. The simulated vectors were compared with the results from the four tracking techniques, to determine the yield and reliability of each tracking algorithm.
Developing robotic behavior using a genetic programming model
Pryor, R.J.
1998-01-01
This report describes the methodology for using a genetic programming model to develop tracking behaviors for autonomous, microscale robotic vehicles. The use of such vehicles for surveillance and detection operations has become increasingly important in defense and humanitarian applications. Through an evolutionary process similar to that found in nature, the genetic programming model generates a computer program that when downloaded onto a robotic vehicle`s on-board computer will guide the robot to successfully accomplish its task. Simulations of multiple robots engaged in problem-solving tasks have demonstrated cooperative behaviors. This report also discusses the behavior model produced by genetic programming and presents some results achieved during the study.
An Approach to the Programming of Biased Regression Algorithms.
1978-11-01
Due to the near nonexistence of computer algorithms for calculating estimators and ancillary statistics that are needed for biased regression methodologies, many users of these methodologies are forced to write their own programs. Brute-force coding of such programs can result in a great waste of computer core and computing time, as well as inefficient and inaccurate computing techniques. This article proposes some guides to more efficient programming by taking advantage of mathematical similarities among several of the more popular biased regression estimators.
Decomposition algorithms for stochastic programming on a computational grid.
Linderoth, J.; Wright, S.; Mathematics and Computer Science; Axioma Inc.
2003-01-01
We describe algorithms for two-stage stochastic linear programming with recourse and their implementation on a grid computing platform. In particular, we examine serial and asynchronous versions of the L-shaped method and a trust-region method. The parallel platform of choice is the dynamic, heterogeneous, opportunistic platform provided by the Condor system. The algorithms are of master-worker type (with the workers being used to solve second-stage problems), and the MW runtime support library (which supports master-worker computations) is key to the implementation. Computational results are presented on large sample-average approximations of problems from the literature.
A genetic algorithm-based job scheduling model for big data analytics.
Lu, Qinghua; Li, Shanshan; Zhang, Weishan; Zhang, Lei
Big data analytics (BDA) applications are a new category of software applications that process large amounts of data using scalable parallel processing infrastructure to obtain hidden value. Hadoop is the most mature open-source big data analytics framework, which implements the MapReduce programming model to process big data with MapReduce jobs. Big data analytics jobs are often continuous and not mutually separated. The existing work mainly focuses on executing jobs in sequence, which are often inefficient and consume high energy. In this paper, we propose a genetic algorithm-based job scheduling model for big data analytics applications to improve the efficiency of big data analytics. To implement the job scheduling model, we leverage an estimation module to predict the performance of clusters when executing analytics jobs. We have evaluated the proposed job scheduling model in terms of feasibility and accuracy.
Optimal groundwater remediation using artificial neural networks and the genetic algorithm
Rogers, Leah L.
1992-08-01
An innovative computational approach for the optimization of groundwater remediation is presented which uses artificial neural networks (ANNs) and the genetic algorithm (GA). In this approach, the ANN is trained to predict an aspect of the outcome of a flow and transport simulation. Then the GA searches through realizations or patterns of pumping and uses the trained network to predict the outcome of the realizations. This approach has advantages of parallel processing of the groundwater simulations and the ability to ``recycle`` or reuse the base of knowledge formed by these simulations. These advantages offer reduction of computational burden of the groundwater simulations relative to a more conventional approach which uses nonlinear programming (NLP) with a quasi-newtonian search. Also the modular nature of this approach facilitates substitution of different groundwater simulation models.
Development of Web-Based Menu Planning Support System and its Solution Using Genetic Algorithm
NASA Astrophysics Data System (ADS)
Kashima, Tomoko; Matsumoto, Shimpei; Ishii, Hiroaki
2009-10-01
Recently lifestyle-related diseases have become an object of public concern, while at the same time people are being more health conscious. As an essential factor for causing the lifestyle-related diseases, we assume that the knowledge circulation on dietary habits is still insufficient. This paper focuses on everyday meals close to our life and proposes a well-balanced menu planning system as a preventive measure of lifestyle-related diseases. The system is developed by using a Web-based frontend and it provides multi-user services and menu information sharing capabilities like social networking services (SNS). The system is implemented on a Web server running Apache (HTTP server software), MySQL (database management system), and PHP (scripting language for dynamic Web pages). For the menu planning, a genetic algorithm is applied by understanding this problem as multidimensional 0-1 integer programming.
Genetic algorithm based design optimization of a permanent magnet brushless dc motor
NASA Astrophysics Data System (ADS)
Upadhyay, P. R.; Rajagopal, K. R.
2005-05-01
Genetic algorithm (GA) based design optimization of a permanent magnet brushless dc motor is presented in this paper. A 70 W, 350 rpm, ceiling fan motor with radial-filed configuration is designed by considering the efficiency as the objective function. Temperature-rise and motor weight are the constraints and the slot electric loading, magnet-fraction, slot-fraction, airgap, and airgap flux density are the design variables. The efficiency and the phase-inductance of the motor designed using the developed CAD program are improved by using the GA based optimization technique; from 84.75% and 5.55 mH to 86.06% and 2.4 mH, respectively.
NASA Technical Reports Server (NTRS)
Tinker, Michael L.; Steincamp, James W.; Stewart, Eric T.; Patton, Bruce W.; Pannell, William P.; Newby, Ronald L.; Coffman, Mark E.; Qualls, A. L.; Bancroft, S.; Molvik, Greg
2003-01-01
The Nuclear Electric Vehicle Optimization Toolset (NEVOT) optimizes the design of all major Nuclear Electric Propulsion (NEP) vehicle subsystems for a defined mission within constraints and optimization parameters chosen by a user. The tool uses a Genetic Algorithm (GA) search technique to combine subsystem designs and evaluate the fitness of the integrated design to fulfill a mission. The fitness of an individual is used within the GA to determine its probability of survival through successive generations in which the designs with low fitness are eliminated and replaced with combinations or mutations of designs with higher fitness. The program can find optimal solutions for different sets of fitness metrics without modification and can create and evaluate vehicle designs that might never be conceived of through traditional design techniques. It is anticipated that the flexible optimization methodology will expand present knowledge of the design trade-offs inherent in designing nuclear powered space vehicles and lead to improved NEP designs.
Genetic Algorithm Calibration of Probabilistic Cellular Automata for Modeling Mining Permit Activity
Louis, S.J.; Raines, G.L.
2003-01-01
We use a genetic algorithm to calibrate a spatially and temporally resolved cellular automata to model mining activity on public land in Idaho and western Montana. The genetic algorithm searches through a space of transition rule parameters of a two dimensional cellular automata model to find rule parameters that fit observed mining activity data. Previous work by one of the authors in calibrating the cellular automaton took weeks - the genetic algorithm takes a day and produces rules leading to about the same (or better) fit to observed data. These preliminary results indicate that genetic algorithms are a viable tool in calibrating cellular automata for this application. Experience gained during the calibration of this cellular automata suggests that mineral resource information is a critical factor in the quality of the results. With automated calibration, further refinements of how the mineral-resource information is provided to the cellular automaton will probably improve our model.
NASA Technical Reports Server (NTRS)
Wang, Lui; Valenzuela-Rendon, Manuel
1993-01-01
The Space Station Freedom will require the supply of items in a regular fashion. A schedule for the delivery of these items is not easy to design due to the large span of time involved and the possibility of cancellations and changes in shuttle flights. This paper presents the basic concepts of a genetic algorithm model, and also presents the results of an effort to apply genetic algorithms to the design of propellant resupply schedules. As part of this effort, a simple simulator and an encoding by which a genetic algorithm can find near optimal schedules have been developed. Additionally, this paper proposes ways in which robust schedules, i.e., schedules that can tolerate small changes, can be found using genetic algorithms.
Genetic Algorithm for Initial Orbit Determination with Too Short Arc (Continued)
NASA Astrophysics Data System (ADS)
Li, X. R.; Wang, X.
2016-03-01
When using the genetic algorithm to solve the problem of too-short-arc (TSA) determination, due to the difference of computing processes between the genetic algorithm and classical method, the methods for outliers editing are no longer applicable. In the genetic algorithm, the robust estimation is acquired by means of using different loss functions in the fitness function, then the outlier problem of TSAs is solved. Compared with the classical method, the application of loss functions in the genetic algorithm is greatly simplified. Through the comparison of results of different loss functions, it is clear that the methods of least median square and least trimmed square can greatly improve the robustness of TSAs, and have a high breakdown point.
EDGA: A Population Evolution Direction-Guided Genetic Algorithm for Protein-Ligand Docking.
Guan, Boxin; Zhang, Changsheng; Ning, Jiaxu
2016-07-01
Protein-ligand docking can be formulated as a search algorithm associated with an accurate scoring function. However, most current search algorithms cannot show good performance in docking problems, especially for highly flexible docking. To overcome this drawback, this article presents a novel and robust optimization algorithm (EDGA) based on the Lamarckian genetic algorithm (LGA) for solving flexible protein-ligand docking problems. This method applies a population evolution direction-guided model of genetics, in which search direction evolves to the optimum solution. The method is more efficient to find the lowest energy of protein-ligand docking. We consider four search methods-a tradition genetic algorithm, LGA, SODOCK, and EDGA-and compare their performance in docking of six protein-ligand docking problems. The results show that EDGA is the most stable, reliable, and successful.
GENNET-Toolbox: An Evolving Genetic Algorithm for Neural Network Training
NASA Astrophysics Data System (ADS)
Gómez-Garay, Vicente; Irigoyen, Eloy; Artaza, Fernando
Genetic Algorithms have been used from 1989 for both Neural Network training and design. Nevertheless, the use of a Genetic Algorithm for adjusting the Neural Network parameters can still be engaging. This work presents the study and validation of a different approach to this matter by introducing a Genetic Algorithm designed for Neural Network training. This algorithm features a mutation operator capable of working on three levels (network, neuron and layer) and with the mutation parameters encoded and evolving within each individual. We also explore the use of three types of hybridization: post-training, Lamarckian and Baldwinian. These proposes in combination with the algorithm, show for a fast and powerful tool for Neural Network training.
Fernandez-Lozano, C; Canto, C; Gestal, M; Andrade-Garda, J M; Rabuñal, J R; Dorado, J; Pazos, A
2013-01-01
Given the background of the use of Neural Networks in problems of apple juice classification, this paper aim at implementing a newly developed method in the field of machine learning: the Support Vector Machines (SVM). Therefore, a hybrid model that combines genetic algorithms and support vector machines is suggested in such a way that, when using SVM as a fitness function of the Genetic Algorithm (GA), the most representative variables for a specific classification problem can be selected.
Fernandez-Lozano, C.; Canto, C.; Gestal, M.; Andrade-Garda, J. M.; Rabuñal, J. R.; Dorado, J.; Pazos, A.
2013-01-01
Given the background of the use of Neural Networks in problems of apple juice classification, this paper aim at implementing a newly developed method in the field of machine learning: the Support Vector Machines (SVM). Therefore, a hybrid model that combines genetic algorithms and support vector machines is suggested in such a way that, when using SVM as a fitness function of the Genetic Algorithm (GA), the most representative variables for a specific classification problem can be selected. PMID:24453933
Truss Optimization for a Manned Nuclear Electric Space Vehicle using Genetic Algorithms
NASA Technical Reports Server (NTRS)
Benford, Andrew; Tinker, Michael L.
2004-01-01
The purpose of this paper is to utilize the genetic algorithm (GA) optimization method for structural design of a nuclear propulsion vehicle. Genetic algorithms provide a guided, random search technique that mirrors biological adaptation. To verify the GA capabilities, other traditional optimization methods were used to generate results for comparison to the GA results, first for simple two-dimensional structures, and then for full-scale three-dimensional truss designs.
Page, Andrew J; Keane, Thomas M; Naughton, Thomas J
2010-07-01
We present a multi-heuristic evolutionary task allocation algorithm to dynamically map tasks to processors in a heterogeneous distributed system. It utilizes a genetic algorithm, combined with eight common heuristics, in an effort to minimize the total execution time. It operates on batches of unmapped tasks and can preemptively remap tasks to processors. The algorithm has been implemented on a Java distributed system and evaluated with a set of six problems from the areas of bioinformatics, biomedical engineering, computer science and cryptography. Experiments using up to 150 heterogeneous processors show that the algorithm achieves better efficiency than other state-of-the-art heuristic algorithms.
Application of Hybrid Genetic Algorithm Routine in Optimizing Food and Bioengineering Processes.
Tumuluru, Jaya Shankar; McCulloch, Richard
2016-11-09
Optimization is a crucial step in the analysis of experimental results. Deterministic methods only converge on local optimums and require exponentially more time as dimensionality increases. Stochastic algorithms are capable of efficiently searching the domain space; however convergence is not guaranteed. This article demonstrates the novelty of the hybrid genetic algorithm (HGA), which combines both stochastic and deterministic routines for improved optimization results. The new hybrid genetic algorithm developed is applied to the Ackley benchmark function as well as case studies in food, biofuel, and biotechnology processes. For each case study, the hybrid genetic algorithm found a better optimum candidate than reported by the sources. In the case of food processing, the hybrid genetic algorithm improved the anthocyanin yield by 6.44%. Optimization of bio-oil production using HGA resulted in a 5.06% higher yield. In the enzyme production process, HGA predicted a 0.39% higher xylanase yield. Hybridization of the genetic algorithm with a deterministic algorithm resulted in an improved optimum compared to statistical methods.
Application of Hybrid Genetic Algorithm Routine in Optimizing Food and Bioengineering Processes
Tumuluru, Jaya Shankar; McCulloch, Richard
2016-01-01
Optimization is a crucial step in the analysis of experimental results. Deterministic methods only converge on local optimums and require exponentially more time as dimensionality increases. Stochastic algorithms are capable of efficiently searching the domain space; however convergence is not guaranteed. This article demonstrates the novelty of the hybrid genetic algorithm (HGA), which combines both stochastic and deterministic routines for improved optimization results. The new hybrid genetic algorithm developed is applied to the Ackley benchmark function as well as case studies in food, biofuel, and biotechnology processes. For each case study, the hybrid genetic algorithm found a better optimum candidate than reported by the sources. In the case of food processing, the hybrid genetic algorithm improved the anthocyanin yield by 6.44%. Optimization of bio-oil production using HGA resulted in a 5.06% higher yield. In the enzyme production process, HGA predicted a 0.39% higher xylanase yield. Hybridization of the genetic algorithm with a deterministic algorithm resulted in an improved optimum compared to statistical methods. PMID:28231171
Visibility conflict resolution for multiple antennae and multi-satellites via genetic algorithm
NASA Astrophysics Data System (ADS)
Lee, Junghyun; Hyun, Chung; Ahn, Hyosung; Wang, Semyung; Choi, Sujin; Jung, Okchul; Chung, Daewon; Ko, Kwanghee
Satellite mission control systems typically are operated by scheduling missions to the visibility between ground stations and satellites. The communication for the mission is achieved by interacting with satellite visibility and ground station support. Specifically, the satellite forms a cone-type visibility passing over a ground station, and the antennas of ground stations support the satellite. When two or more satellites pass by at the same time or consecutively, the satellites may generate a visibility conflict. As the number of satellites increases, solving visibility conflict becomes important issue. In this study, we propose a visibility conflict resolution algorithm of multi-satellites by using a genetic algorithm (GA). The problem is converted to scheduling optimization modeling. The visibility of satellites and the supports of antennas are considered as tasks and resources individually. The visibility of satellites is allocated to the total support time of antennas as much as possible for users to obtain the maximum benefit. We focus on a genetic algorithm approach because the problem is complex and not defined explicitly. The genetic algorithm can be applied to such a complex model since it only needs an objective function and can approach a global optimum. However, the mathematical proof of global optimality for the genetic algorithm is very challenging. Therefore, we apply a greedy algorithm and show that our genetic approach is reasonable by comparing with the performance of greedy algorithm application.
Ensemble of hybrid genetic algorithm for two-dimensional phase unwrapping
NASA Astrophysics Data System (ADS)
Balakrishnan, D.; Quan, C.; Tay, C. J.
2013-06-01
The phase unwrapping is the final and trickiest step in any phase retrieval technique. Phase unwrapping by artificial intelligence methods (optimization algorithms) such as hybrid genetic algorithm, reverse simulated annealing, particle swarm optimization, minimum cost matching showed better results than conventional phase unwrapping methods. In this paper, Ensemble of hybrid genetic algorithm with parallel populations is proposed to solve the branch-cut phase unwrapping problem. In a single populated hybrid genetic algorithm, the selection, cross-over and mutation operators are applied to obtain new population in every generation. The parameters and choice of operators will affect the performance of the hybrid genetic algorithm. The ensemble of hybrid genetic algorithm will facilitate to have different parameters set and different choice of operators simultaneously. Each population will use different set of parameters and the offspring of each population will compete against the offspring of all other populations, which use different set of parameters. The effectiveness of proposed algorithm is demonstrated by phase unwrapping examples and advantages of the proposed method are discussed.
Gao, Wei; Chen, Dongliang; Wang, Xu
2016-01-01
To compute the stability of underground engineering, a constitutive model of surrounding rock must be identified. Many constitutive models for rock mass have been proposed. In this model identification study, a generalized constitutive law for an elastic-plastic constitutive model is applied. Using the generalized constitutive law, the problem of model identification is transformed to a problem of parameter identification, which is a typical and complicated optimization. To improve the efficiency of the traditional optimization method, an immunized genetic algorithm that is proposed by the author is applied in this study. In this new algorithm, the principle of artificial immune algorithm is combined with the genetic algorithm. Therefore, the entire computation efficiency of model identification will be improved. Using this new model identification method, a numerical example and an engineering example are used to verify the computing ability of the algorithm. The results show that this new model identification algorithm can significantly improve the computation efficiency and the computation effect.
Alternative Living Kidney Donation Programs Boost Genetically Unrelated Donation
Poldervaart, Rosalie A.; Laging, Mirjam; Royaards, Tessa; Kal-van Gestel, Judith A.; van Agteren, Madelon; de Klerk, Marry; Zuidema, Willij; Betjes, Michiel G. H.; Roodnat, Joke I.
2015-01-01
Donor-recipient ABO and/or HLA incompatibility used to lead to donor decline. Development of alternative transplantation programs enabled transplantation of incompatible couples. How did that influence couple characteristics? Between 2000 and 2014, 1232 living donor transplantations have been performed. In conventional and ABO-incompatible transplantation the willing donor becomes an actual donor for the intended recipient. In kidney-exchange and domino-donation the donor donates indirectly to the intended recipient. The relationship between the donor and intended recipient was studied. There were 935 conventional and 297 alternative program transplantations. There were 66 ABO-incompatible, 68 domino-paired, 62 kidney-exchange, and 104 altruistic donor transplantations. Waiting list recipients (n = 101) were excluded as they did not bring a living donor. 1131 couples remained of whom 196 participated in alternative programs. Genetically unrelated donors (486) were primarily partners. Genetically related donors (645) were siblings, parents, children, and others. Compared to genetically related couples, almost three times as many genetically unrelated couples were incompatible and participated in alternative programs (P < 0.001). 62% of couples were genetically related in the conventional donation program versus 32% in alternative programs (P < 0.001). Patient and graft survival were not significantly different between recipient programs. Alternative donation programs increase the number of transplantations by enabling genetically unrelated donors to donate. PMID:26421181
ERIC Educational Resources Information Center
Chen, Hsinchun
1995-01-01
Presents an overview of artificial-intelligence-based inductive learning techniques and their use in information science research. Three methods are discussed: the connectionist Hopfield network; the symbolic ID3/ID5R; evolution-based genetic algorithms. The knowledge representations and algorithms of these methods are examined in the context of…
ERIC Educational Resources Information Center
Tran, Huu-Khoa; Chiou, Juing -Shian; Peng, Shou-Tao
2016-01-01
In this paper, the feasibility of a Genetic Algorithm Optimization (GAO) education software based Fuzzy Logic Controller (GAO-FLC) for simulating the flight motion control of Unmanned Aerial Vehicles (UAVs) is designed. The generated flight trajectories integrate the optimized Scaling Factors (SF) fuzzy controller gains by using GAO algorithm. The…
Automated Test Assembly for Cognitive Diagnosis Models Using a Genetic Algorithm
ERIC Educational Resources Information Center
Finkelman, Matthew; Kim, Wonsuk; Roussos, Louis A.
2009-01-01
Much recent psychometric literature has focused on cognitive diagnosis models (CDMs), a promising class of instruments used to measure the strengths and weaknesses of examinees. This article introduces a genetic algorithm to perform automated test assembly alongside CDMs. The algorithm is flexible in that it can be applied whether the goal is to…
NASA Astrophysics Data System (ADS)
Kanagaraj, G.; Ponnambalam, S. G.; Jawahar, N.; Mukund Nilakantan, J.
2014-10-01
This article presents an effective hybrid cuckoo search and genetic algorithm (HCSGA) for solving engineering design optimization problems involving problem-specific constraints and mixed variables such as integer, discrete and continuous variables. The proposed algorithm, HCSGA, is first applied to 13 standard benchmark constrained optimization functions and subsequently used to solve three well-known design problems reported in the literature. The numerical results obtained by HCSGA show competitive performance with respect to recent algorithms for constrained design optimization problems.
A Fuzzy Genetic Algorithm Approach to an Adaptive Information Retrieval Agent.
ERIC Educational Resources Information Center
Martin-Bautista, Maria J.; Vila, Maria-Amparo; Larsen, Henrik Legind
1999-01-01
Presents an approach to a Genetic Information Retrieval Agent Filter (GIRAF) that filters and ranks documents retrieved from the Internet according to users' preferences by using a Genetic Algorithm and fuzzy set theory to handle the imprecision of users' preferences and users' evaluation of the retrieved documents. (Author/LRW)
Nonlinear inversion of potential-field data using a hybrid-encoding genetic algorithm
Chen, C.; Xia, J.; Liu, J.; Feng, G.
2006-01-01
Using a genetic algorithm to solve an inverse problem of complex nonlinear geophysical equations is advantageous because it does not require computer gradients of models or "good" initial models. The multi-point search of a genetic algorithm makes it easier to find the globally optimal solution while avoiding falling into a local extremum. As is the case in other optimization approaches, the search efficiency for a genetic algorithm is vital in finding desired solutions successfully in a multi-dimensional model space. A binary-encoding genetic algorithm is hardly ever used to resolve an optimization problem such as a simple geophysical inversion with only three unknowns. The encoding mechanism, genetic operators, and population size of the genetic algorithm greatly affect search processes in the evolution. It is clear that improved operators and proper population size promote the convergence. Nevertheless, not all genetic operations perform perfectly while searching under either a uniform binary or a decimal encoding system. With the binary encoding mechanism, the crossover scheme may produce more new individuals than with the decimal encoding. On the other hand, the mutation scheme in a decimal encoding system will create new genes larger in scope than those in the binary encoding. This paper discusses approaches of exploiting the search potential of genetic operations in the two encoding systems and presents an approach with a hybrid-encoding mechanism, multi-point crossover, and dynamic population size for geophysical inversion. We present a method that is based on the routine in which the mutation operation is conducted in the decimal code and multi-point crossover operation in the binary code. The mix-encoding algorithm is called the hybrid-encoding genetic algorithm (HEGA). HEGA provides better genes with a higher probability by a mutation operator and improves genetic algorithms in resolving complicated geophysical inverse problems. Another significant
Abejuela, Harmony Raylen; Osser, David N
2016-01-01
This revision of previous algorithms for the pharmacotherapy of generalized anxiety disorder was developed by the Psychopharmacology Algorithm Project at the Harvard South Shore Program. Algorithms from 1999 and 2010 and associated references were reevaluated. Newer studies and reviews published from 2008-14 were obtained from PubMed and analyzed with a focus on their potential to justify changes in the recommendations. Exceptions to the main algorithm for special patient populations, such as women of childbearing potential, pregnant women, the elderly, and those with common medical and psychiatric comorbidities, were considered. Selective serotonin reuptake inhibitors (SSRIs) are still the basic first-line medication. Early alternatives include duloxetine, buspirone, hydroxyzine, pregabalin, or bupropion, in that order. If response is inadequate, then the second recommendation is to try a different SSRI. Additional alternatives now include benzodiazepines, venlafaxine, kava, and agomelatine. If the response to the second SSRI is unsatisfactory, then the recommendation is to try a serotonin-norepinephrine reuptake inhibitor (SNRI). Other alternatives to SSRIs and SNRIs for treatment-resistant or treatment-intolerant patients include tricyclic antidepressants, second-generation antipsychotics, and valproate. This revision of the GAD algorithm responds to issues raised by new treatments under development (such as pregabalin) and organizes the evidence systematically for practical clinical application.
Road Traffic Control Based on Genetic Algorithm for Reducing Traffic Congestion
NASA Astrophysics Data System (ADS)
Shigehiro, Yuji; Miyakawa, Takuya; Masuda, Tatsuya
In this paper, we propose a road traffic control method for reducing traffic congestion with genetic algorithm. In the not too distant future, the system which controls the routes of all vehicles in a certain area must be realized. The system should optimize the routes of all vehicles, however the solution space of this problem is enormous. Therefore we apply the genetic algorithm to this problem, by encoding the route of all vehicles to a fixed length chromosome. To improve the search performance, a new genetic operator called “path shortening” is also designed. The effectiveness of the proposed method is shown by the experiment.
Alshamlan, Hala M; Badr, Ghada H; Alohali, Yousef A
2015-06-01
Naturally inspired evolutionary algorithms prove effectiveness when used for solving feature selection and classification problems. Artificial Bee Colony (ABC) is a relatively new swarm intelligence method. In this paper, we propose a new hybrid gene selection method, namely Genetic Bee Colony (GBC) algorithm. The proposed algorithm combines the used of a Genetic Algorithm (GA) along with Artificial Bee Colony (ABC) algorithm. The goal is to integrate the advantages of both algorithms. The proposed algorithm is applied to a microarray gene expression profile in order to select the most predictive and informative genes for cancer classification. In order to test the accuracy performance of the proposed algorithm, extensive experiments were conducted. Three binary microarray datasets are use, which include: colon, leukemia, and lung. In addition, another three multi-class microarray datasets are used, which are: SRBCT, lymphoma, and leukemia. Results of the GBC algorithm are compared with our recently proposed technique: mRMR when combined with the Artificial Bee Colony algorithm (mRMR-ABC). We also compared the combination of mRMR with GA (mRMR-GA) and Particle Swarm Optimization (mRMR-PSO) algorithms. In addition, we compared the GBC algorithm with other related algorithms that have been recently published in the literature, using all benchmark datasets. The GBC algorithm shows superior performance as it achieved the highest classification accuracy along with the lowest average number of selected genes. This proves that the GBC algorithm is a promising approach for solving the gene selection problem in both binary and multi-class cancer classification.
Mathematical Modeling of Intestinal Iron Absorption Using Genetic Programming
Colins, Andrea; Gerdtzen, Ziomara P.; Nuñez, Marco T.; Salgado, J. Cristian
2017-01-01
Iron is a trace metal, key for the development of living organisms. Its absorption process is complex and highly regulated at the transcriptional, translational and systemic levels. Recently, the internalization of the DMT1 transporter has been proposed as an additional regulatory mechanism at the intestinal level, associated to the mucosal block phenomenon. The short-term effect of iron exposure in apical uptake and initial absorption rates was studied in Caco-2 cells at different apical iron concentrations, using both an experimental approach and a mathematical modeling framework. This is the first report of short-term studies for this system. A non-linear behavior in the apical uptake dynamics was observed, which does not follow the classic saturation dynamics of traditional biochemical models. We propose a method for developing mathematical models for complex systems, based on a genetic programming algorithm. The algorithm is aimed at obtaining models with a high predictive capacity, and considers an additional parameter fitting stage and an additional Jackknife stage for estimating the generalization error. We developed a model for the iron uptake system with a higher predictive capacity than classic biochemical models. This was observed both with the apical uptake dataset used for generating the model and with an independent initial rates dataset used to test the predictive capacity of the model. The model obtained is a function of time and the initial apical iron concentration, with a linear component that captures the global tendency of the system, and a non-linear component that can be associated to the movement of DMT1 transporters. The model presented in this paper allows the detailed analysis, interpretation of experimental data, and identification of key relevant components for this complex biological process. This general method holds great potential for application to the elucidation of biological mechanisms and their key components in other complex
A Constrained Genetic Algorithm with Adaptively Defined Fitness Function in MRS Quantification
NASA Astrophysics Data System (ADS)
Papakostas, G. A.; Karras, D. A.; Mertzios, B. G.; Graveron-Demilly, D.; van Ormondt, D.
MRS Signal quantification is a rather involved procedure and has attracted the interest of the medical engineering community, regarding the development of computationally efficient methodologies. Significant contributions based on Computational Intelligence tools, such as Neural Networks (NNs), demonstrated a good performance but not without drawbacks already discussed by the authors. On the other hand preliminary application of Genetic Algorithms (GA) has already been reported in the literature by the authors regarding the peak detection problem encountered in MRS quantification using the Voigt line shape model. This paper investigates a novel constrained genetic algorithm involving a generic and adaptively defined fitness function which extends the simple genetic algorithm methodology in case of noisy signals. The applicability of this new algorithm is scrutinized through experimentation in artificial MRS signals interleaved with noise, regarding its signal fitting capabilities. Although extensive experiments with real world MRS signals are necessary, the herein shown performance illustrates the method's potential to be established as a generic MRS metabolites quantification procedure.
Research on Prediction Model of Time Series Based on Fuzzy Theory and Genetic Algorithm
NASA Astrophysics Data System (ADS)
Xiao-qin, Wu
Fuzzy theory is one of the newly adduced self-adaptive strategies,which is applied to dynamically adjust the parameters o genetic algorithms for the purpose of enhancing the performance.In this paper, the financial time series analysis and forecasting as the main case study to the theory of soft computing technology framework that focuses on the fuzzy theory and genetic algorithms(FGA) as a method of integration. the financial time series forecasting model based on fuzzy theory and genetic algorithms was built. the ShangZheng index cards as an example. The experimental results show that FGA perform s much better than BP neural network, not only in the precision, but also in the searching speed.The hybrid algorithm has a strong feasibility and superiority.
Phase Reconstruction from FROG Using Genetic Algorithms[Frequency-Resolved Optical Gating
Omenetto, F.G.; Nicholson, J.W.; Funk, D.J.; Taylor, A.J.
1999-04-12
The authors describe a new technique for obtaining the phase and electric field from FROG measurements using genetic algorithms. Frequency-Resolved Optical Gating (FROG) has gained prominence as a technique for characterizing ultrashort pulses. FROG consists of a spectrally resolved autocorrelation of the pulse to be measured. Typically a combination of iterative algorithms is used, applying constraints from experimental data, and alternating between the time and frequency domain, in order to retrieve an optical pulse. The authors have developed a new approach to retrieving the intensity and phase from FROG data using a genetic algorithm (GA). A GA is a general parallel search technique that operates on a population of potential solutions simultaneously. Operators in a genetic algorithm, such as crossover, selection, and mutation are based on ideas taken from evolution.
A quantum-inspired genetic algorithm based on probabilistic coding for multiple sequence alignment.
Huo, Hong-Wei; Stojkovic, Vojislav; Xie, Qiao-Luan
2010-02-01
Quantum parallelism arises from the ability of a quantum memory register to exist in a superposition of base states. Since the number of possible base states is 2(n), where n is the number of qubits in the quantum memory register, one operation on a quantum computer performs what an exponential number of operations on a classical computer performs. The power of quantum algorithms comes from taking advantages of quantum parallelism. Quantum algorithms are exponentially faster than classical algorithms. Genetic optimization algorithms are stochastic search algorithms which are used to search large, nonlinear spaces where expert knowledge is lacking or difficult to encode. QGMALIGN--a probabilistic coding based quantum-inspired genetic algorithm for multiple sequence alignment is presented. A quantum rotation gate as a mutation operator is used to guide the quantum state evolution. Six genetic operators are designed on the coding basis to improve the solution during the evolutionary process. The experimental results show that QGMALIGN can compete with the popular methods, such as CLUSTALX and SAGA, and performs well on the presenting biological data. Moreover, the addition of genetic operators to the quantum-inspired algorithm lowers the cost of overall running time.
Martins, F V C; Carrano, E G; Wanner, E F; Takahashi, R H C; Mateus, G R; Nakamura, F G
2014-01-01
Recent works raised the hypothesis that the assignment of a geometry to the decision variable space of a combinatorial problem could be useful both for providing meaningful descriptions of the fitness landscape and for supporting the systematic construction of evolutionary operators (the geometric operators) that make a consistent usage of the space geometric properties in the search for problem optima. This paper introduces some new geometric operators that constitute the realization of searches along the combinatorial space versions of the geometric entities descent directions and subspaces. The new geometric operators are stated in the specific context of the wireless sensor network dynamic coverage and connectivity problem (WSN-DCCP). A genetic algorithm (GA) is developed for the WSN-DCCP using the proposed operators, being compared with a formulation based on integer linear programming (ILP) which is solved with exact methods. That ILP formulation adopts a proxy objective function based on the minimization of energy consumption in the network, in order to approximate the objective of network lifetime maximization, and a greedy approach for dealing with the system's dynamics. To the authors' knowledge, the proposed GA is the first algorithm to outperform the lifetime of networks as synthesized by the ILP formulation, also running in much smaller computational times for large instances.
A genetic algorithm that seeks native states of peptides and proteins.
Sun, S
1995-01-01
We describe a computer algorithm to predict native structures of proteins and peptides from their primary sequences, their known native radii of gyration, and their known disulfide bonding patterns, starting from random conformations. Proteins are represented as simplified real-space main chains with single-bead side chains. Nonlocal interactions are taken from structural database-derived statistical potentials, as in an earlier treatment. Local interactions are taken from simulations of (phi, psi) energy surfaces for each amino acid generated using the Biosym Discover program. Conformational searching is done by a genetic algorithm-based method. Reasonable structures are obtained for melittin (a 26-mer), avian pancreatic polypeptide inhibitor (a 36-mer), crambin (a 46-mer), apamin (an 18-mer), tachyplesin (a 17-mer), C-peptide of ribonuclease A (a 13-mer), and four different designed helical peptides. A hydrogen bond interaction was tested and found to be generally unnecessary for helical peptides, but it helps fold some sheet regions in these structures. For the few longer chains we tested, the method appears not to converge. In those cases, it appears to recover native-like secondary structures, but gets incorrect tertiary folds. PMID:8527647
Reveal, A General Reverse Engineering Algorithm for Inference of Genetic Network Architectures
NASA Technical Reports Server (NTRS)
Liang, Shoudan; Fuhrman, Stefanie; Somogyi, Roland
1998-01-01
Given the immanent gene expression mapping covering whole genomes during development, health and disease, we seek computational methods to maximize functional inference from such large data sets. Is it possible, in principle, to completely infer a complex regulatory network architecture from input/output patterns of its variables? We investigated this possibility using binary models of genetic networks. Trajectories, or state transition tables of Boolean nets, resemble time series of gene expression. By systematically analyzing the mutual information between input states and output states, one is able to infer the sets of input elements controlling each element or gene in the network. This process is unequivocal and exact for complete state transition tables. We implemented this REVerse Engineering ALgorithm (REVEAL) in a C program, and found the problem to be tractable within the conditions tested so far. For n = 50 (elements) and k = 3 (inputs per element), the analysis of incomplete state transition tables (100 state transition pairs out of a possible 10(exp 15)) reliably produced the original rule and wiring sets. While this study is limited to synchronous Boolean networks, the algorithm is generalizable to include multi-state models, essentially allowing direct application to realistic biological data sets. The ability to adequately solve the inverse problem may enable in-depth analysis of complex dynamic systems in biology and other fields.
A Genetic Algorithm for Diploid Genome Reconstruction Using Paired-End Sequencing
Ting, Chuan-Kang; Lin, Choun-Sea; Chan, Ming-Tsai; Chen, Jian-Wei; Chuang, Sheng-Yu; Huang, Yao-Ting
2016-01-01
The genome of many species in the biosphere is a diploid consisting of paternal and maternal haplotypes. The differences between these two haplotypes range from single nucleotide polymorphisms (SNPs) to large-scale structural variations (SVs). Existing genome assemblers for next-generation sequencing platforms attempt to reconstruct one consensus sequence, which is a mosaic of two parental haplotypes. Reconstructing paternal and maternal haplotypes is an important task in linkage analysis and association studies. This study designs and implemented HapSVAssembler on the basis of Genetic Algorithm (GA) and paired-end sequencing. The proposed method builds a consensus sequence, identifies various types of heterozygous variants, and reconstructs the paternal and maternal haplotypes by solving an optimization problem with a GA algorithm. Experimental results indicate that the HapSVAssembler has high accuracy and contiguity under various sequencing coverage, error rates, and insert sizes. The program is tested on pilot sequencing of a highly heterozygous genome, and 12,781 heterozygous SNPs and 602 hemizygous SVs are identified. We observe that, although the number of SVs is much less than that of SNPs, the genomic regions occupied by SVs are much larger, implying the heterozygosity computed using SNPs or k-mer spectrum may be under-estimated. PMID:27861560
Automating the packing heuristic design process with genetic programming.
Burke, Edmund K; Hyde, Matthew R; Kendall, Graham; Woodward, John
2012-01-01
The literature shows that one-, two-, and three-dimensional bin packing and knapsack packing are difficult problems in operational research. Many techniques, including exact, heuristic, and metaheuristic approaches, have been investigated to solve these problems and it is often not clear which method to use when presented with a new instance. This paper presents an approach which is motivated by the goal of building computer systems which can design heuristic methods. The overall aim is to explore the possibilities for automating the heuristic design process. We present a genetic programming system to automatically generate a good quality heuristic for each instance. It is not necessary to change the methodology depending on the problem type (one-, two-, or three-dimensional knapsack and bin packing problems), and it therefore has a level of generality unmatched by other systems in the literature. We carry out an extensive suite of experiments and compare with the best human designed heuristics in the literature. Note that our heuristic design methodology uses the same parameters for all the experiments. The contribution of this paper is to present a more general packing methodology than those currently available, and to show that, by using this methodology, it is possible for a computer system to design heuristics which are competitive with the human designed heuristics from the literature. This represents the first packing algorithm in the literature able to claim human competitive results in such a wide variety of packing domains.
Gouws, F.S.; Aldrich, C.
1996-11-01
By making use of machine learning techniques, the features of flotation froths and other plant variables can be used as a basis for the development of knowledge-based systems for plant monitoring and control. probabilistic induction and genetic algorithms were used to classify different froth structures from industrial copper and platinum flotation plants, as well as recoveries from a phosphate flotation plant. Both algorithms were equally capable of classifying the different froths at least as well as a human expert. The genetic algorithm performed significantly better than the inductive algorithm but required more tuning before optimum results could be obtained. The classification rules produced by both algorithms can easily be incorporated into a supervisory expert system shell or decision support system for plant operators and could consequently make a significant impact on the way flotation plants are currently being controlled.
Performance characterization of the dynamic programming obstacle detection algorithm.
Gandhi, Tarak; Yang, Mau-Tsuen; Kasturi, Rangachar; Camps, Octavia I; Coraor, Lee D; McCandless, Jeffrey
2006-05-01
A computer vision-based system using images from an airborne aircraft can increase flight safety by aiding the pilot to detect obstacles in the flight path so as to avoid mid-air collisions. Such a system fits naturally with the development of an external vision system proposed by NASA for use in high-speed civil transport aircraft with limited cockpit visibility. The detection techniques should provide high detection probability for obstacles that can vary from subpixels to a few pixels in size, while maintaining a low false alarm probability in the presence of noise and severe background clutter. Furthermore, the detection algorithms must be able to report such obstacles in a timely fashion, imposing severe constraints on their execution time. For this purpose, we have implemented a number of algorithms to detect airborne obstacles using image sequences obtained from a camera mounted on an aircraft. This paper describes the methodology used for characterizing the performance of the dynamic programming obstacle detection algorithm and its special cases. The experimental results were obtained using several types of image sequences, with simulated and real backgrounds. The approximate performance of the algorithm is also theoretically derived using principles of statistical analysis in terms of the signal-to-noise ration (SNR) required for the probabilities of false alarms and misdetections to be lower than prespecified values. The theoretical and experimental performance are compared in terms of the required SNR.
Performance of a community detection algorithm based on semidefinite programming
NASA Astrophysics Data System (ADS)
Ricci-Tersenghi, Federico; Javanmard, Adel; Montanari, Andrea
2016-03-01
The problem of detecting communities in a graph is maybe one the most studied inference problems, given its simplicity and widespread diffusion among several disciplines. A very common benchmark for this problem is the stochastic block model or planted partition problem, where a phase transition takes place in the detection of the planted partition by changing the signal-to-noise ratio. Optimal algorithms for the detection exist which are based on spectral methods, but we show these are extremely sensible to slight modification in the generative model. Recently Javanmard, Montanari and Ricci-Tersenghi [1] have used statistical physics arguments, and numerical simulations to show that finding communities in the stochastic block model via semidefinite programming is quasi optimal. Further, the resulting semidefinite relaxation can be solved efficiently, and is very robust with respect to changes in the generative model. In this paper we study in detail several practical aspects of this new algorithm based on semidefinite programming for the detection of the planted partition. The algorithm turns out to be very fast, allowing the solution of problems with O(105) variables in few second on a laptop computer.
Mohammad, Othman; Osser, David N
2014-01-01
This new algorithm for the pharmacotherapy of acute mania was developed by the Psychopharmacology Algorithm Project at the Harvard South Shore Program. The authors conducted a literature search in PubMed and reviewed key studies, other algorithms and guidelines, and their references. Treatments were prioritized considering three main considerations: (1) effectiveness in treating the current episode, (2) preventing potential relapses to depression, and (3) minimizing side effects over the short and long term. The algorithm presupposes that clinicians have made an accurate diagnosis, decided how to manage contributing medical causes (including substance misuse), discontinued antidepressants, and considered the patient's childbearing potential. We propose different algorithms for mixed and nonmixed mania. Patients with mixed mania may be treated first with a second-generation antipsychotic, of which the first choice is quetiapine because of its greater efficacy for depressive symptoms and episodes in bipolar disorder. Valproate and then either lithium or carbamazepine may be added. For nonmixed mania, lithium is the first-line recommendation. A second-generation antipsychotic can be added. Again, quetiapine is favored, but if quetiapine is unacceptable, risperidone is the next choice. Olanzapine is not considered a first-line treatment due to its long-term side effects, but it could be second-line. If the patient, whether mixed or nonmixed, is still refractory to the above medications, then depending on what has already been tried, consider carbamazepine, haloperidol, olanzapine, risperidone, and valproate first tier; aripiprazole, asenapine, and ziprasidone second tier; and clozapine third tier (because of its weaker evidence base and greater side effects). Electroconvulsive therapy may be considered at any point in the algorithm if the patient has a history of positive response or is intolerant of medications.
Biotech 101: an educational outreach program in genetics and biotechnology.
East, Kelly M; Hott, Adam M; Callanan, Nancy P; Lamb, Neil E
2012-10-01
Recent advances in research and biotechnology are making genetics and genomics increasingly relevant to the lives and health of the general public. For the public to make informed healthcare and public policy decisions relating to genetic information, there is a need for increased genetic literacy. Biotech 101 is a free, short-course for the local community introducing participants to topics in genetics, genomics, and biotechnology, created at the HudsonAlpha Institute for Biotechnology. This study evaluated the effectiveness of Biotech 101 in increasing the genetic literacy of program participants through pre-and-post surveys. Genetic literacy was measured through increases in self-perceived knowledge for each content area covered through the course and the self-reported impact the course had on various aspects of participants' lives. Three hundred ninety-two individuals attended Biotech 101 during the first three course offerings. Participants reported a significant increase in self-perceived knowledge for each content area (p < 0.01). Participants also reported the program had high levels of impact on their lives and decision-making, a high likelihood for continued self-learning, and overwhelming satisfaction with course content and logistics. Biotech 101 is an effective mechanism for impacting participants' lives and genetic literacy and serves as a model for other similar programs, adding to the currently limited evidence base regarding public educational strategies in genetics and biotechnology.
A Genetic Algorithm Approach to Nonlinear Least Squares Estimation
ERIC Educational Resources Information Center
Olinsky, Alan D.; Quinn, John T.; Mangiameli, Paul M.; Chen, Shaw K.
2004-01-01
A common type of problem encountered in mathematics is optimizing nonlinear functions. Many popular algorithms that are currently available for finding nonlinear least squares estimators, a special class of nonlinear problems, are sometimes inadequate. They might not converge to an optimal value, or if they do, it could be to a local rather than…
NASA Astrophysics Data System (ADS)
Wu, Dongjun
Network industries have technologies characterized by a spatial hierarchy, the "network," with capital-intensive interconnections and time-dependent, capacity-limited flows of products and services through the network to customers. This dissertation studies service pricing, investment and business operating strategies for the electric power network. First-best solutions for a variety of pricing and investment problems have been studied. The evaluation of genetic algorithms (GA, which are methods based on the idea of natural evolution) as a primary means of solving complicated network problems, both w.r.t. pricing: as well as w.r.t. investment and other operating decisions, has been conducted. New constraint-handling techniques in GAs have been studied and tested. The actual application of such constraint-handling techniques in solving practical non-linear optimization problems has been tested on several complex network design problems with encouraging initial results. Genetic algorithms provide solutions that are feasible and close to optimal when the optimal solution is know; in some instances, the near-optimal solutions for small problems by the proposed GA approach can only be tested by pushing the limits of currently available non-linear optimization software. The performance is far better than several commercially available GA programs, which are generally inadequate in solving any of the problems studied in this dissertation, primarily because of their poor handling of constraints. Genetic algorithms, if carefully designed, seem very promising in solving difficult problems which are intractable by traditional analytic methods.
A probabilistic coding based quantum genetic algorithm for multiple sequence alignment.
Huo, Hongwei; Xie, Qiaoluan; Shen, Xubang; Stojkovic, Vojislav
2008-01-01
This paper presents an original Quantum Genetic algorithm for Multiple sequence ALIGNment (QGMALIGN) that combines a genetic algorithm and a quantum algorithm. A quantum probabilistic coding is designed for representing the multiple sequence alignment. A quantum rotation gate as a mutation operator is used to guide the quantum state evolution. Six genetic operators are designed on the coding basis to improve the solution during the evolutionary process. The features of implicit parallelism and state superposition in quantum mechanics and the global search capability of the genetic algorithm are exploited to get efficient computation. A set of well known test cases from BAliBASE2.0 is used as reference to evaluate the efficiency of the QGMALIGN optimization. The QGMALIGN results have been compared with the most popular methods (CLUSTALX, SAGA, DIALIGN, SB_PIMA, and QGMALIGN) results. The QGMALIGN results show that QGMALIGN performs well on the presenting biological data. The addition of genetic operators to the quantum algorithm lowers the cost of overall running time.
Convergence Rate of the Successive Zooming Genetic Algorithm for Band-Widths of Equality Constraint
NASA Astrophysics Data System (ADS)
Kwon, Y. D.; Han, S. W.; Do, J. W.
Modern optimization techniques, such as the steepest descent method, Newton's method, Rosen's gradient projection method, genetic algorithms, etc., have been developed and quickly improved with the progress of digital computers. The steepest descent method and Newton's method are applied efficiently to unconstrained problems. For many engineering problems involving constraints, the genetic algorithm and SUMT1are applied with relative ease. Genetic algorithms2have global search characteristics and relatively good convergence rates. Recently, a Successive Zooming Genetic Algorithm (SZGA)3,4 was introduced that can search the precise optimal solution at any level of desired accuracy. In the case of engineering problems involving an equality constraint, even if good optimization techniques are applied to the constraint problems, a proper constraint range can lead to a more rapid convergence and precise solution. This study investigated the proper band-width of an equality constraint using the Successive Zooming Genetic Algorithm (SZGA) technique both theoretically and numerically. We were able to find a certain band-width range of the rapid convergence for each problem, and a broad but more general one too.
Testing the race model inequality: an algorithm and computer programs.
Ulrich, Rolf; Miller, Jeff; Schröter, Hannes
2007-05-01
In divided-attention tasks, responses are faster when two target stimuli are presented, and thus one is redundant, than when only a single target stimulus is presented. Raab (1962) suggested an account of this redundant-targets effect in terms of a race model in which the response to redundant target stimuli is initiated by the faster of two separate target detection processes. Such models make a prediction about the probability distributions of reaction times that is often called the race model inequality, and it is often of interest to test this prediction. In this article, we describe a precise algorithm that can be used to test the race model inequality and present MATLAB routines and a Pascal program that implement this algorithm.
Experimental Performance of a Genetic Algorithm for Airborne Strategic Conflict Resolution
NASA Technical Reports Server (NTRS)
Karr, David A.; Vivona, Robert A.; Roscoe, David A.; DePascale, Stephen M.; Consiglio, Maria
2009-01-01
The Autonomous Operations Planner, a research prototype flight-deck decision support tool to enable airborne self-separation, uses a pattern-based genetic algorithm to resolve predicted conflicts between the ownship and traffic aircraft. Conflicts are resolved by modifying the active route within the ownship's flight management system according to a predefined set of maneuver pattern templates. The performance of this pattern-based genetic algorithm was evaluated in the context of batch-mode Monte Carlo simulations running over 3600 flight hours of autonomous aircraft in en-route airspace under conditions ranging from typical current traffic densities to several times that level. Encountering over 8900 conflicts during two simulation experiments, the genetic algorithm was able to resolve all but three conflicts, while maintaining a required time of arrival constraint for most aircraft. Actual elapsed running time for the algorithm was consistent with conflict resolution in real time. The paper presents details of the genetic algorithm's design, along with mathematical models of the algorithm's performance and observations regarding the effectiveness of using complimentary maneuver patterns when multiple resolutions by the same aircraft were required.
Experimental Performance of a Genetic Algorithm for Airborne Strategic Conflict Resolution
NASA Technical Reports Server (NTRS)
Karr, David A.; Vivona, Robert A.; Roscoe, David A.; DePascale, Stephen M.; Consiglio, Maria
2009-01-01
The Autonomous Operations Planner, a research prototype flight-deck decision support tool to enable airborne self-separation, uses a pattern-based genetic algorithm to resolve predicted conflicts between the ownship and traffic aircraft. Conflicts are resolved by modifying the active route within the ownship s flight management system according to a predefined set of maneuver pattern templates. The performance of this pattern-based genetic algorithm was evaluated in the context of batch-mode Monte Carlo simulations running over 3600 flight hours of autonomous aircraft in en-route airspace under conditions ranging from typical current traffic densities to several times that level. Encountering over 8900 conflicts during two simulation experiments, the genetic algorithm was able to resolve all but three conflicts, while maintaining a required time of arrival constraint for most aircraft. Actual elapsed running time for the algorithm was consistent with conflict resolution in real time. The paper presents details of the genetic algorithm s design, along with mathematical models of the algorithm s performance and observations regarding the effectiveness of using complimentary maneuver patterns when multiple resolutions by the same aircraft were required.
Zhang, Lun; Zhang, Meng; Yang, Wenchen; Dong, Decun
2015-01-01
This paper presents the modelling and analysis of the capacity expansion of urban road traffic network (ICURTN). Thebilevel programming model is first employed to model the ICURTN, in which the utility of the entire network is maximized with the optimal utility of travelers' route choice. Then, an improved hybrid genetic algorithm integrated with golden ratio (HGAGR) is developed to enhance the local search of simple genetic algorithms, and the proposed capacity expansion model is solved by the combination of the HGAGR and the Frank-Wolfe algorithm. Taking the traditional one-way network and bidirectional network as the study case, three numerical calculations are conducted to validate the presented model and algorithm, and the primary influencing factors on extended capacity model are analyzed. The calculation results indicate that capacity expansion of road network is an effective measure to enlarge the capacity of urban road network, especially on the condition of limited construction budget; the average computation time of the HGAGR is 122 seconds, which meets the real-time demand in the evaluation of the road network capacity.
Using genetic algorithm to solve a new multi-period stochastic optimization model
NASA Astrophysics Data System (ADS)
Zhang, Xin-Li; Zhang, Ke-Cun
2009-09-01
This paper presents a new asset allocation model based on the CVaR risk measure and transaction costs. Institutional investors manage their strategic asset mix over time to achieve favorable returns subject to various uncertainties, policy and legal constraints, and other requirements. One may use a multi-period portfolio optimization model in order to determine an optimal asset mix. Recently, an alternative stochastic programming model with simulated paths was proposed by Hibiki [N. Hibiki, A hybrid simulation/tree multi-period stochastic programming model for optimal asset allocation, in: H. Takahashi, (Ed.) The Japanese Association of Financial Econometrics and Engineering, JAFFE Journal (2001) 89-119 (in Japanese); N. Hibiki A hybrid simulation/tree stochastic optimization model for dynamic asset allocation, in: B. Scherer (Ed.), Asset and Liability Management Tools: A Handbook for Best Practice, Risk Books, 2003, pp. 269-294], which was called a hybrid model. However, the transaction costs weren't considered in that paper. In this paper, we improve Hibiki's model in the following aspects: (1) The risk measure CVaR is introduced to control the wealth loss risk while maximizing the expected utility; (2) Typical market imperfections such as short sale constraints, proportional transaction costs are considered simultaneously. (3) Applying a genetic algorithm to solve the resulting model is discussed in detail. Numerical results show the suitability and feasibility of our methodology.
Genetic algorithms and their applications in accelerator physics
Hofler, Alicia S.
2013-12-01
Multi-objective optimization techniques are widely used in an extremely broad range of fields. Genetic optimization for multi-objective optimization was introduced in the accelerator community in relatively recent times and quickly spread becoming a fundamental tool in multi-dimensional optimization problems. This discussion introduces the basics of the technique and reviews applications in accelerator problems.
An algorithm for the identification of genetically modified animals.
Forabosco, Flavio; Sundström, Fredrik L; Rydhmer, Lotta
2013-05-01
The diffusion of genetically modified (GM) animals has generated a demand for accurate and unique identification to assure compliance with relevant national and international legislation. Individual identification of GM animals is essential to improve safety and traceability, as well as to fulfill the present and future expectations of producers, consumers, and authorities.
Genetic algorithms for optimal reactive power compensation planning on the national grid system
NASA Astrophysics Data System (ADS)
Pilgrim, J. D.
This work investigates the use of Genetic Algorithms (GAs) for optimal Reactive power Compensation Planning (RCP) of practical power systems. In particular, RCP of the transmission system of England and Wales as owned and operated by National Grid is considered. The GA is used to simultaneously solve both the siting problem---optimisation of the installation of new devices---and the operational problem---optimisation of preventive transformer taps and the controller characteristics of dynamic compensation devices. A computer package called Genetic Compensation Placement (GCP) has been developed which uses an Integer coded GA (IGA) to solve the RCP problem. The RCP problem is implemented as a multi-objective optimisation: in the interests of security, the number of system and operational constraint violations and the deviation of the busbar voltages from the ideal are all minimised for the base (intact) case and the contingent cases. In the interests of cost reduction, the reactive power cost is minimised for the base case. The reactive power cost encompasses the costs incurred from the installation of reactive power sources and the utilisation of new and existing dynamic reactive power compensation devices. GCP is compared to SCORPION (a planning program currently being used by National Grid) which uses a combination of linear programming and heuristic back-tracking. Results are presented for a practical test system developed with the cooperation of National Grid, and it is found that GCP produces solutions that are cheaper than solutions found by SCORPION and perform extremely well: an improvement in voltage profiles, a decrease in complex power mismatches, and a reduction in MVolt Amps-reactive (VAr) utilisation were observed.
A high-performance genetic algorithm: using traveling salesman problem as a case.
Tsai, Chun-Wei; Tseng, Shih-Pang; Chiang, Ming-Chao; Yang, Chu-Sing; Hong, Tzung-Pei
2014-01-01
This paper presents a simple but efficient algorithm for reducing the computation time of genetic algorithm (GA) and its variants. The proposed algorithm is motivated by the observation that genes common to all the individuals of a GA have a high probability of surviving the evolution and ending up being part of the final solution; as such, they can be saved away to eliminate the redundant computations at the later generations of a GA. To evaluate the performance of the proposed algorithm, we use it not only to solve the traveling salesman problem but also to provide an extensive analysis on the impact it may have on the quality of the end result. Our experimental results indicate that the proposed algorithm can significantly reduce the computation time of GA and GA-based algorithms while limiting the degradation of the quality of the end result to a very small percentage compared to traditional GA.
A High-Performance Genetic Algorithm: Using Traveling Salesman Problem as a Case
Tsai, Chun-Wei; Tseng, Shih-Pang; Yang, Chu-Sing
2014-01-01
This paper presents a simple but efficient algorithm for reducing the computation time of genetic algorithm (GA) and its variants. The proposed algorithm is motivated by the observation that genes common to all the individuals of a GA have a high probability of surviving the evolution and ending up being part of the final solution; as such, they can be saved away to eliminate the redundant computations at the later generations of a GA. To evaluate the performance of the proposed algorithm, we use it not only to solve the traveling salesman problem but also to provide an extensive analysis on the impact it may have on the quality of the end result. Our experimental results indicate that the proposed algorithm can significantly reduce the computation time of GA and GA-based algorithms while limiting the degradation of the quality of the end result to a very small percentage compared to traditional GA. PMID:24892038
Fernandez, Michael; Caballero, Julio; Fernandez, Leyden; Sarai, Akinori
2011-02-01
Many articles in "in silico" drug design implemented genetic algorithm (GA) for feature selection, model optimization, conformational search, or docking studies. Some of these articles described GA applications to quantitative structure-activity relationships (QSAR) modeling in combination with regression and/or classification techniques. We reviewed the implementation of GA in drug design QSAR and specifically its performance in the optimization of robust mathematical models such as Bayesian-regularized artificial neural networks (BRANNs) and support vector machines (SVMs) on different drug design problems. Modeled data sets encompassed ADMET and solubility properties, cancer target inhibitors, acetylcholinesterase inhibitors, HIV-1 protease inhibitors, ion-channel and calcium entry blockers, and antiprotozoan compounds as well as protein classes, functional, and conformational stability data. The GA-optimized predictors were often more accurate and robust than previous published models on the same data sets and explained more than 65% of data variances in validation experiments. In addition, feature selection over large pools of molecular descriptors provided insights into the structural and atomic properties ruling ligand-target interactions.
An Algorithm for Solving Interval Linear Programming Problems
1974-11-01
34regularized" a lä Chames -Cooper so that infeasibility is determined at optimal solution if that is the case. If I(x*(v)) - 0 then x*(v) is an... Chames and Cooper J3]) may be used to compute the new inverse. Theorem 2 The algorithm described above terminates in a finite number of steps...I J 19- REFERENCES 1) A. Ben-Israel and A. Chames , "An Explicit Solution of A Special Class of Linear Programming Problems", Operations
Dynamic programming and graph algorithms in computer vision.
Felzenszwalb, Pedro F; Zabih, Ramin
2011-04-01
Optimization is a powerful paradigm for expressing and solving problems in a wide range of areas, and has been successfully applied to many vision problems. Discrete optimization techniques are especially interesting since, by carefully exploiting problem structure, they often provide nontrivial guarantees concerning solution quality. In this paper, we review dynamic programming and graph algorithms, and discuss representative examples of how these discrete optimization techniques have been applied to some classical vision problems. We focus on the low-level vision problem of stereo, the mid-level problem of interactive object segmentation, and the high-level problem of model-based recognition.
NASA Astrophysics Data System (ADS)
Attia, Khalid A. M.; Nassar, Mohammed W. I.; El-Zeiny, Mohamed B.; Serag, Ahmed
2017-01-01
For the first time, a new variable selection method based on swarm intelligence namely firefly algorithm is coupled with three different multivariate calibration models namely, concentration residual augmented classical least squares, artificial neural network and support vector regression in UV spectral data. A comparative study between the firefly algorithm and the well-known genetic algorithm was developed. The discussion revealed the superiority of using this new powerful algorithm over the well-known genetic algorithm. Moreover, different statistical tests were performed and no significant differences were found between all the models regarding their predictabilities. This ensures that simpler and faster models were obtained without any deterioration of the quality of the calibration.
A multiobjective optimization algorithm is applied to a groundwater quality management problem involving remediation by pump-and-treat (PAT). The multiobjective optimization framework uses the niched Pareto genetic algorithm (NPGA) and is applied to simultaneously minimize the...
A High Fuel Consumption Efficiency Management Scheme for PHEVs Using an Adaptive Genetic Algorithm
Lee, Wah Ching; Tsang, Kim Fung; Chi, Hao Ran; Hung, Faan Hei; Wu, Chung Kit; Chui, Kwok Tai; Lau, Wing Hong; Leung, Yat Wah
2015-01-01
A high fuel efficiency management scheme for plug-in hybrid electric vehicles (PHEVs) has been developed. In order to achieve fuel consumption reduction, an adaptive genetic algorithm scheme has been designed to adaptively manage the energy resource usage. The objective function of the genetic algorithm is implemented by designing a fuzzy logic controller which closely monitors and resembles the driving conditions and environment of PHEVs, thus trading off between petrol versus electricity for optimal driving efficiency. Comparison between calculated results and publicized data shows that the achieved efficiency of the fuzzified genetic algorithm is better by 10% than existing schemes. The developed scheme, if fully adopted, would help reduce over 600 tons of CO2 emissions worldwide every day. PMID:25587974
Song, Jiancai; Xue, Guixiang; Kang, Yanan
2016-01-01
In this paper, a novel method for selecting a navigation satellite subset for a global positioning system (GPS) based on a genetic algorithm is presented. This approach is based on minimizing the factors in the geometric dilution of precision (GDOP) using a modified genetic algorithm (MGA) with an elite conservation strategy, adaptive selection, adaptive mutation, and a hybrid genetic algorithm that can select a subset of the satellites represented by specific numbers in the interval (4 ∼ n) while maintaining position accuracy. A comprehensive simulation demonstrates that the MGA-based satellite selection method effectively selects the correct number of optimal satellite subsets using receiver autonomous integrity monitoring (RAIM) or fault detection and exclusion (FDE). This method is more adaptable and flexible for GPS receivers, particularly for those used in handset equipment and mobile phones. PMID:26943638
A Hybrid Neural Network-Genetic Algorithm Technique for Aircraft Engine Performance Diagnostics
NASA Technical Reports Server (NTRS)
Kobayashi, Takahisa; Simon, Donald L.
2001-01-01
In this paper, a model-based diagnostic method, which utilizes Neural Networks and Genetic Algorithms, is investigated. Neural networks are applied to estimate the engine internal health, and Genetic Algorithms are applied for sensor bias detection and estimation. This hybrid approach takes advantage of the nonlinear estimation capability provided by neural networks while improving the robustness to measurement uncertainty through the application of Genetic Algorithms. The hybrid diagnostic technique also has the ability to rank multiple potential solutions for a given set of anomalous sensor measurements in order to reduce false alarms and missed detections. The performance of the hybrid diagnostic technique is evaluated through some case studies derived from a turbofan engine simulation. The results show this approach is promising for reliable diagnostics of aircraft engines.
Song, Jiancai; Xue, Guixiang; Kang, Yanan
2016-01-01
In this paper, a novel method for selecting a navigation satellite subset for a global positioning system (GPS) based on a genetic algorithm is presented. This approach is based on minimizing the factors in the geometric dilution of precision (GDOP) using a modified genetic algorithm (MGA) with an elite conservation strategy, adaptive selection, adaptive mutation, and a hybrid genetic algorithm that can select a subset of the satellites represented by specific numbers in the interval (4 ∼ n) while maintaining position accuracy. A comprehensive simulation demonstrates that the MGA-based satellite selection method effectively selects the correct number of optimal satellite subsets using receiver autonomous integrity monitoring (RAIM) or fault detection and exclusion (FDE). This method is more adaptable and flexible for GPS receivers, particularly for those used in handset equipment and mobile phones.
Genetic algorithm based image binarization approach and its quantitative evaluation via pooling
NASA Astrophysics Data System (ADS)
Hu, Huijun; Liu, Ya; Liu, Maofu
2015-12-01
The binarized image is very critical to image visual feature extraction, especially shape feature, and the image binarization approaches have been attracted more attentions in the past decades. In this paper, the genetic algorithm is applied to optimizing the binarization threshold of the strip steel defect image. In order to evaluate our genetic algorithm based image binarization approach in terms of quantity, we propose the novel pooling based evaluation metric, motivated by information retrieval community, to avoid the lack of ground-truth binary image. Experimental results show that our genetic algorithm based binarization approach is effective and efficiency in the strip steel defect images and our quantitative evaluation metric on image binarization via pooling is also feasible and practical.
Zhang Changjiang; Wang Xiaodong
2008-11-06
An efficient typhoon cloud image restoration algorithm is proposed. Having implemented contourlet transform to a typhoon cloud image, noise is reduced in the high sub-bands. Weight median value filter is used to reduce the noise in the contourlet domain. Inverse contourlet transform is done to obtain the de-noising image. In order to enhance the global contrast of the typhoon cloud image, in-complete Beta transform (IBT) is used to determine non-linear gray transform curve so as to enhance global contrast for the de-noising typhoon cloud image. Genetic algorithm is used to obtain the optimal gray transform curve. Information entropy is used as the fitness function of the genetic algorithm. Experimental results show that the new algorithm is able to well enhance the global for the typhoon cloud image while well reducing the noises in the typhoon cloud image.
Multi-marker-LD based genetic algorithm for tag SNP selection.
Mouawad, Amer E; Mansour, Nashat
2014-12-01
Despite the advances in genotyping technologies which have led to large reduction in genotyping cost, the Tag SNP Selection problem remains an important problem for computational biologists and geneticists. Selecting the smallest subset of tag SNPs that can predict the other SNPs would considerably minimize the complexity of genome-wide or block-based SNP-disease association studies. These studies would lead to better diagnosis and treatment of diseases. In this work, we propose three variations of a genetic algorithm based on two-marker linkage disequilibrium, multi-marker linkage disequilibrium, and a third measure that we denote by prediction power. The performance of the three algorithms are compared with those of a recognized tag SNP selection algorithm using three different real data sets from the HapMap project. The results indicate that the multi-marker linkage disequilibrium based genetic algorithm yields better prediction accuracy.
Xu, Sheng-Hua; Liu, Ji-Ping; Zhang, Fu-Hao; Wang, Liang; Sun, Li-Jian
2015-01-01
A combination of genetic algorithm and particle swarm optimization (PSO) for vehicle routing problems with time windows (VRPTW) is proposed in this paper. The improvements of the proposed algorithm include: using the particle real number encoding method to decode the route to alleviate the computation burden, applying a linear decreasing function based on the number of the iterations to provide balance between global and local exploration abilities, and integrating with the crossover operator of genetic algorithm to avoid the premature convergence and the local minimum. The experimental results show that the proposed algorithm is not only more efficient and competitive with other published results but can also obtain more optimal solutions for solving the VRPTW issue. One new well-known solution for this benchmark problem is also outlined in the following. PMID:26343655
Parametric inversion of viscoelastic media from VSP data using a genetic algorithm
NASA Astrophysics Data System (ADS)
Bin, Hu; Gang, Tang; Jianwei, Ma; Huizhu, Yang
2007-09-01
Viscoelastic parameters are becoming more important and their inversion algorithms are studied by many researchers. Genetic algorithms are random, self-adaptive, robust, and heuristic with global search and convergence abilities. Based on the direct VSP wave equation, a genetic algorithm (GA) is introduced to determine the viscoelastic parameters. First, the direct wave equation in frequency is expressed as a function of complex velocity and then the complex velocities estimated by GA inversion. Since the phase velocity and Q-factor both are functions of complex velocity, their values can be computed easily. However, there are so many complex velocities that it is difficult to invert them directly. They can be rewritten as a function of c 0 and c ∞ to reduce the number of parameters during the inversion process. Finally, a theoretical model experiment proves that our algorithm is exact and effective.
Xu, Sheng-Hua; Liu, Ji-Ping; Zhang, Fu-Hao; Wang, Liang; Sun, Li-Jian
2015-08-27
A combination of genetic algorithm and particle swarm optimization (PSO) for vehicle routing problems with time windows (VRPTW) is proposed in this paper. The improvements of the proposed algorithm include: using the particle real number encoding method to decode the route to alleviate the computation burden, applying a linear decreasing function based on the number of the iterations to provide balance between global and local exploration abilities, and integrating with the crossover operator of genetic algorithm to avoid the premature convergence and the local minimum. The experimental results show that the proposed algorithm is not only more efficient and competitive with other published results but can also obtain more optimal solutions for solving the VRPTW issue. One new well-known solution for this benchmark problem is also outlined in the following.
Optimal design of optical reference signals by use of a genetic algorithm
NASA Astrophysics Data System (ADS)
Saez-Landete, José; Salcedo-Sanz, Sancho; Rosa-Zurera, Manuel; Alonso, José; Bernabeu, Eusebio
2005-10-01
A new technique for the generation of optical reference signals with optimal properties is presented. In grating measurement systems a reference signal is needed to achieve an absolute measurement of the position. The optical signal is the autocorrelation of two codes with binary transmittance. For a long time, the design of this type of code has required great computational effort, which limits the size of the code to ˜30 elements. Recently, the application of the dividing rectangles (DIRECT) algorithm has allowed the automatic design of codes up to 100 elements. Because of the binary nature of the problem and the parallel processing of the genetic algorithms, these algorithms are efficient tools for obtaining codes with particular autocorrelation properties. We design optimum zero reference codes with arbitrary length by means of a genetic algorithm enhanced with a restricted search operator.
Genetic algorithms and classifier systems: Foundations and future directions
Holland, J.H.
1987-01-01
Theoretical questions about classifier systems, with rare exceptions, apply equally to other adaptive nonlinear networks (ANNs) such as the connectionist models of cognitive psychology, the immune system, economic systems, ecologies, and genetic systems. This paper discusses pervasive properties of ANNs and the kinds of mathematics relevant to questions about these properties. It discusses relevant functional extensions of the basic classifier system and extensions of the extant mathematical theory. An appendix briefly reviews some of the key theorems about classifier systems. 6 refs.
Genetic programming and serial processing for time series classification.
Alfaro-Cid, Eva; Sharman, Ken; Esparcia-Alcázar, Anna I
2014-01-01
This work describes an approach devised by the authors for time series classification. In our approach genetic programming is used in combination with a serial processing of data, where the last output is the result of the classification. The use of genetic programming for classification, although still a field where more research in needed, is not new. However, the application of genetic programming to classification tasks is normally done by considering the input data as a feature vector. That is, to the best of our knowledge, there are not examples in the genetic programming literature of approaches where the time series data are processed serially and the last output is considered as the classification result. The serial processing approach presented here fills a gap in the existing literature. This approach was tested in three different problems. Two of them are real world problems whose data were gathered for online or conference competitions. As there are published results of these two problems this gives us the chance to compare the performance of our approach against top performing methods. The serial processing of data in combination with genetic programming obtained competitive results in both competitions, showing its potential for solving time series classification problems. The main advantage of our serial processing approach is that it can easily handle very large datasets.
Orozco-Monteagudo, Maykel; Taboada-Crispi, Alberto; Gutierrez-Hernandez, Liliana
2008-11-06
This paper deals with the controversial topic of the selection of the parameters of a genetic algorithm, in this case hierarchical, used for training of multilayer perceptron neural networks for the binary classification. The parameters to select are the crossover and mutation probabilities of the control and parametric genes and the permanency percent. The results can be considered as a guide for using this kind of algorithm.
Ugrinov, Krastyu G; Freed, Stefan D; Thomas, Clayton L; Lee, Shaun W
2015-01-01
Mucopolysaccharidosis type IIIA (MPS-IIIA, Sanfilippo syndrome) is a Lysosomal Storage Disease caused by cellular deficiency of N-sulfoglucosamine sulfohydrolase (SGSH). Given the large heterogeneity of genetic mutations responsible for the disease, a comprehensive understanding of the mechanisms by which these mutations affect enzyme function is needed to guide effective therapies. We developed a multiparametric computational algorithm to assess how patient genetic mutations in SGSH affect overall enzyme biogenesis, stability, and function. 107 patient mutations for the SGSH gene were obtained from the Human Gene Mutation Database representing all of the clinical mutations documented for Sanfilippo syndrome. We assessed each mutation individually using ten distinct parameters to give a comprehensive predictive score of the stability and misfolding capacity of the SGSH enzyme resulting from each of these mutations. The predictive score generated by our multiparametric algorithm yielded a standardized quantitative assessment of the severity of a given SGSH genetic mutation toward overall enzyme activity. Application of our algorithm has identified SGSH mutations in which enzymatic malfunction of the gene product is specifically due to impairments in protein folding. These scores provide an assessment of the degree to which a particular mutation could be treated using approaches such as chaperone therapies. Our multiparametric protein biogenesis algorithm advances a key understanding in the overall biochemical mechanism underlying Sanfilippo syndrome. Importantly, the design of our multiparametric algorithm can be tailored to many other diseases of genetic heterogeneity for which protein misfolding phenotypes may constitute a major component of disease manifestation.
NASA Astrophysics Data System (ADS)
Narwadi, Teguh; Subiyanto
2017-03-01
The Travelling Salesman Problem (TSP) is one of the best known NP-hard problems, which means that no exact algorithm to solve it in polynomial time. This paper present a new variant application genetic algorithm approach with a local search technique has been developed to solve the TSP. For the local search technique, an iterative hill climbing method has been used. The system is implemented on the Android OS because android is now widely used around the world and it is mobile system. It is also integrated with Google API that can to get the geographical location and the distance of the cities, and displays the route. Therefore, we do some experimentation to test the behavior of the application. To test the effectiveness of the application of hybrid genetic algorithm (HGA) is compare with the application of simple GA in 5 sample from the cities in Central Java, Indonesia with different numbers of cities. According to the experiment results obtained that in the average solution HGA shows in 5 tests out of 5 (100%) is better than simple GA. The results have shown that the hybrid genetic algorithm outperforms the genetic algorithm especially in the case with the problem higher complexity.
Optimization of a fermentation medium using neural networks and genetic algorithms.
Nagata, Yuko; Chu, Khim Hoong
2003-11-01
Artificial neural networks and genetic algorithms are used to model and optimize a fermentation medium for the production of the enzyme hydantoinase by Agrobacterium radiobacter. Experimental data reported in the literature were used to build two neural network models. The concentrations of four medium components served as inputs to the neural network models, and hydantoinase or cell concentration served as a single output of each model. Genetic algorithms were used to optimize the input space of the neural network models to find the optimum settings for maximum enzyme and cell production. Using this procedure, two artificial intelligence techniques have been effectively integrated to create a powerful tool for process modeling and optimization.
An Efficient Functional Test Generation Method For Processors Using Genetic Algorithms
NASA Astrophysics Data System (ADS)
Hudec, Ján; Gramatová, Elena
2015-07-01
The paper presents a new functional test generation method for processors testing based on genetic algorithms and evolutionary strategies. The tests are generated over an instruction set architecture and a processor description. Such functional tests belong to the software-oriented testing. Quality of the tests is evaluated by code coverage of the processor description using simulation. The presented test generation method uses VHDL models of processors and the professional simulator ModelSim. The rules, parameters and fitness functions were defined for various genetic algorithms used in automatic test generation. Functionality and effectiveness were evaluated using the RISC type processor DP32.
NASA Astrophysics Data System (ADS)
Turner, Giles W.; Tedesco, Emilio; Harris, Kenneth D. M.; Johnston, Roy L.; Kariuki, Benson M.
2000-04-01
Previous implementations of Genetic Algorithms in direct-space strategies for structure solution from powder diffraction data have employed the operations of mating, mutation and natural selection, with the fitness of each structure based on comparison between calculated and experimental powder diffraction patterns (we define fitness as a function of weighted-profile R-factor Rwp). We report an extension to this method, in which each structure generated in the Genetic Algorithm is subjected to local minimization of Rwp with respect to structural variables. This approach represents an implementation of Lamarckian concepts of evolution, and is found to give significant improvements in efficiency and reliability.
A Genetic Algorithm and Fuzzy Logic Approach for Video Shot Boundary Detection.
Thounaojam, Dalton Meitei; Khelchandra, Thongam; Manglem Singh, Kh; Roy, Sudipta
2016-01-01
This paper proposed a shot boundary detection approach using Genetic Algorithm and Fuzzy Logic. In this, the membership functions of the fuzzy system are calculated using Genetic Algorithm by taking preobserved actual values for shot boundaries. The classification of the types of shot transitions is done by the fuzzy system. Experimental results show that the accuracy of the shot boundary detection increases with the increase in iterations or generations of the GA optimization process. The proposed system is compared to latest techniques and yields better result in terms of F1score parameter.
Navigation of Autonomous Mobile Robot under Decision-making Strategy tuned by Genetic Algorithm
NASA Astrophysics Data System (ADS)
Wang, Fei; Kamano, Takuya; Yasuno, Takashi; Suzuki, Takayuki; Harada, Hironobu
This paper describes a novel application of genetic algorithm for navigation of an autonomous mobile robot (AMR) under unknown environments. In the navigation system, the AMR is controlled by the decision-making block, which consists of neural network. To achieve both successful navigation to the goal and the suitable obstacle avoidance, the connection weights of the neural network and speed gains for predefined actions are encoded as genotypes and are tuned simultaneously by genetic algorithm so that the static and dynamic danger-degrees, the energy consumption and the distance and direction errors decrease during the navigation. Experimental results demonstrate the validity of the proposed navigation system.
Chaotic queue-based genetic algorithm for design of a self-tuning fuzzy logic controller
NASA Astrophysics Data System (ADS)
Saini, Sanju; Saini, J. S.
2012-11-01
This paper employs a chaotic queue-based method using logistic equation in a non-canonical genetic algorithm for optimizing the performance of a self-tuning Fuzzy Logic Controller, used for controlling a nonlinear double-coupled system. A comparison has been made with a standard canonical genetic algorithm implemented on the same plant. It has been shown that chaotic queue-method brings an improvement in the performance of the FLC for wide range of set point changes by a more profound initial population spread in the search space.
Digit and command interpretation for electronic book using neural network and genetic algorithm.
Lam, H K; Leung, Frank H F
2004-12-01
This paper presents the interpretation of digits and commands using a modified neural network and the genetic algorithm. The modified neural network exhibits a node-to-node relationship which enhances its learning and generalization abilities. A digit-and-command interpreter constructed by the modified neural networks is proposed to recognize handwritten digits and commands. A genetic algorithm is employed to train the parameters of the modified neural networks of the digit-and-command interpreter. The proposed digit-and-command interpreter is successfully realized in an electronic book. Simulation and experimental results will be presented to show the applicability and merits of the proposed approach.
Optimal placement of tuning masses on truss structures by genetic algorithms
NASA Technical Reports Server (NTRS)
Ponslet, Eric; Haftka, Raphael T.; Cudney, Harley H.
1993-01-01
Optimal placement of tuning masses, actuators and other peripherals on large space structures is a combinatorial optimization problem. This paper surveys several techniques for solving this problem. The genetic algorithm approach to the solution of the placement problem is described in detail. An example of minimizing the difference between the two lowest frequencies of a laboratory truss by adding tuning masses is used for demonstrating some of the advantages of genetic algorithms. The relative efficiencies of different codings are compared using the results of a large number of optimization runs.