Least significant qubit algorithm for quantum images
NASA Astrophysics Data System (ADS)
Sang, Jianzhi; Wang, Shen; Li, Qiong
2016-11-01
To study the feasibility of the classical image least significant bit (LSB) information hiding algorithm on quantum computer, a least significant qubit (LSQb) information hiding algorithm of quantum image is proposed. In this paper, we focus on a novel quantum representation for color digital images (NCQI). Firstly, by designing the three qubits comparator and unitary operators, the reasonability and feasibility of LSQb based on NCQI are presented. Then, the concrete LSQb information hiding algorithm is proposed, which can realize the aim of embedding the secret qubits into the least significant qubits of RGB channels of quantum cover image. Quantum circuit of the LSQb information hiding algorithm is also illustrated. Furthermore, the secrets extracting algorithm and circuit are illustrated through utilizing control-swap gates. The two merits of our algorithm are: (1) it is absolutely blind and (2) when extracting secret binary qubits, it does not need any quantum measurement operation or any other help from classical computer. Finally, simulation and comparative analysis show the performance of our algorithm.
Algorithms and Requirements for Measuring Network Bandwidth
Jin, Guojun
2002-12-08
This report unveils new algorithms for actively measuring (not estimating) available bandwidths with very low intrusion, computing cross traffic, thus estimating the physical bandwidth, provides mathematical proof that the algorithms are accurate, and addresses conditions, requirements, and limitations for new and existing algorithms for measuring network bandwidths. The paper also discusses a number of important terminologies and issues for network bandwidth measurement, and introduces a fundamental parameter -Maximum Burst Size that is critical for implementing algorithms based on multiple packets.
Discovering sequence similarity by the algorithmic significance method
Milosavljevic, A.
1993-02-01
The minimal-length encoding approach is applied to define concept of sequence similarity. A sequence is defined to be similar to another sequence or to a set of keywords if it can be encoded in a small number of bits by taking advantage of common subwords. Minimal-length encoding of a sequence is computed in linear time, using a data compression algorithm that is based on a dynamic programming strategy and the directed acyclic word graph data structure. No assumptions about common word ( k-tuple'') length are made in advance, and common words of any length are considered. The newly proposed algorithmic significance method provides an exact upper bound on the probability that sequence similarity has occurred by chance, thus eliminating the need for any arbitrary choice of similarity thresholds. Preliminary experiments indicate that a small number of keywords can positively identify a DNA sequence, which is extremely relevant in the context of partial sequencing by hybridization.
Discovering sequence similarity by the algorithmic significance method
Milosavljevic, A.
1993-02-01
The minimal-length encoding approach is applied to define concept of sequence similarity. A sequence is defined to be similar to another sequence or to a set of keywords if it can be encoded in a small number of bits by taking advantage of common subwords. Minimal-length encoding of a sequence is computed in linear time, using a data compression algorithm that is based on a dynamic programming strategy and the directed acyclic word graph data structure. No assumptions about common word (``k-tuple``) length are made in advance, and common words of any length are considered. The newly proposed algorithmic significance method provides an exact upper bound on the probability that sequence similarity has occurred by chance, thus eliminating the need for any arbitrary choice of similarity thresholds. Preliminary experiments indicate that a small number of keywords can positively identify a DNA sequence, which is extremely relevant in the context of partial sequencing by hybridization.
Algorithms for Detecting Significantly Mutated Pathways in Cancer
NASA Astrophysics Data System (ADS)
Vandin, Fabio; Upfal, Eli; Raphael, Benjamin J.
Recent genome sequencing studies have shown that the somatic mutations that drive cancer development are distributed across a large number of genes. This mutational heterogeneity complicates efforts to distinguish functional mutations from sporadic, passenger mutations. Since cancer mutations are hypothesized to target a relatively small number of cellular signaling and regulatory pathways, a common approach is to assess whether known pathways are enriched for mutated genes. However, restricting attention to known pathways will not reveal novel cancer genes or pathways. An alterative strategy is to examine mutated genes in the context of genome-scale interaction networks that include both well characterized pathways and additional gene interactions measured through various approaches. We introduce a computational framework for de novo identification of subnetworks in a large gene interaction network that are mutated in a significant number of patients. This framework includes two major features. First, we introduce a diffusion process on the interaction network to define a local neighborhood of "influence" for each mutated gene in the network. Second, we derive a two-stage multiple hypothesis test to bound the false discovery rate (FDR) associated with the identified subnetworks. We test these algorithms on a large human protein-protein interaction network using mutation data from two recent studies: glioblastoma samples from The Cancer Genome Atlas and lung adenocarcinoma samples from the Tumor Sequencing Project. We successfully recover pathways that are known to be important in these cancers, such as the p53 pathway. We also identify additional pathways, such as the Notch signaling pathway, that have been implicated in other cancers but not previously reported as mutated in these samples. Our approach is the first, to our knowledge, to demonstrate a computationally efficient strategy for de novo identification of statistically significant mutated subnetworks. We
The significance of requirements engineering for the medical domain.
Kossmann, Mario
2014-07-01
This paper aims to raise awareness of the importance of Requirements Engineering (RE) for the successful and efficient development of high-quality systems and products for the medical domain. It does so by providing an introduction to RE from the viewpoints of project and programme management and systems engineering in general and by illustrating the usefulness of a sound RE approach to the development of a local healthcare system in a deprived region in central Africa. The paper concludes that RE is just as crucial for the development of systems and products in the medical domain, as it is for the development of systems in the aerospace industry or software systems in the consumer electronics industry; while the degree of detail and formality of how RE is used has to be tailored to fit the context in question.
A Hybrid Swarm Intelligence Algorithm for Intrusion Detection Using Significant Features
Amudha, P.; Karthik, S.; Sivakumari, S.
2015-01-01
Intrusion detection has become a main part of network security due to the huge number of attacks which affects the computers. This is due to the extensive growth of internet connectivity and accessibility to information systems worldwide. To deal with this problem, in this paper a hybrid algorithm is proposed to integrate Modified Artificial Bee Colony (MABC) with Enhanced Particle Swarm Optimization (EPSO) to predict the intrusion detection problem. The algorithms are combined together to find out better optimization results and the classification accuracies are obtained by 10-fold cross-validation method. The purpose of this paper is to select the most relevant features that can represent the pattern of the network traffic and test its effect on the success of the proposed hybrid classification algorithm. To investigate the performance of the proposed method, intrusion detection KDDCup'99 benchmark dataset from the UCI Machine Learning repository is used. The performance of the proposed method is compared with the other machine learning algorithms and found to be significantly different. PMID:26221625
Significant Advances in the AIRS Science Team Version-6 Retrieval Algorithm
NASA Technical Reports Server (NTRS)
Susskind, Joel; Blaisdell, John; Iredell, Lena; Molnar, Gyula
2012-01-01
AIRS/AMSU is the state of the art infrared and microwave atmospheric sounding system flying aboard EOS Aqua. The Goddard DISC has analyzed AIRS/AMSU observations, covering the period September 2002 until the present, using the AIRS Science Team Version-S retrieval algorithm. These products have been used by many researchers to make significant advances in both climate and weather applications. The AIRS Science Team Version-6 Retrieval, which will become operation in mid-20l2, contains many significant theoretical and practical improvements compared to Version-5 which should further enhance the utility of AIRS products for both climate and weather applications. In particular, major changes have been made with regard to the algOrithms used to 1) derive surface skin temperature and surface spectral emissivity; 2) generate the initial state used to start the retrieval procedure; 3) compute Outgoing Longwave Radiation; and 4) determine Quality Control. This paper will describe these advances found in the AIRS Version-6 retrieval algorithm and demonstrate the improvement of AIRS Version-6 products compared to those obtained using Version-5,
NASA Technical Reports Server (NTRS)
Izumi, K. H.; Thompson, J. L.; Groce, J. L.; Schwab, R. W.
1986-01-01
The design requirements for a 4D path definition algorithm are described. These requirements were developed for the NASA ATOPS as an extension of the Local Flow Management/Profile Descent algorithm. They specify the processing flow, functional and data architectures, and system input requirements, and recommended the addition of a broad path revision (reinitialization) function capability. The document also summarizes algorithm design enhancements and the implementation status of the algorithm on an in-house PDP-11/70 computer. Finally, the requirements for the pilot-computer interfaces, the lateral path processor, and guidance and steering function are described.
Algorithmic requirements for swarm intelligence in differently coupled collective systems
Stradner, Jürgen; Thenius, Ronald; Zahadat, Payam; Hamann, Heiko; Crailsheim, Karl; Schmickl, Thomas
2013-01-01
Swarm systems are based on intermediate connectivity between individuals and dynamic neighborhoods. In natural swarms self-organizing principles bring their agents to that favorable level of connectivity. They serve as interesting sources of inspiration for control algorithms in swarm robotics on the one hand, and in modular robotics on the other hand. In this paper we demonstrate and compare a set of bio-inspired algorithms that are used to control the collective behavior of swarms and modular systems: BEECLUST, AHHS (hormone controllers), FGRN (fractal genetic regulatory networks), and VE (virtual embryogenesis). We demonstrate how such bio-inspired control paradigms bring their host systems to a level of intermediate connectivity, what delivers sufficient robustness to these systems for collective decentralized control. In parallel, these algorithms allow sufficient volatility of shared information within these systems to help preventing local optima and deadlock situations, this way keeping those systems flexible and adaptive in dynamic non-deterministic environments. PMID:23805030
New Classification Method Based on Support-Significant Association Rules Algorithm
NASA Astrophysics Data System (ADS)
Li, Guoxin; Shi, Wen
One of the most well-studied problems in data mining is mining for association rules. There was also research that introduced association rule mining methods to conduct classification tasks. These classification methods, based on association rule mining, could be applied for customer segmentation. Currently, most of the association rule mining methods are based on a support-confidence structure, where rules satisfied both minimum support and minimum confidence were returned as strong association rules back to the analyzer. But, this types of association rule mining methods lack of rigorous statistic guarantee, sometimes even caused misleading. A new classification model for customer segmentation, based on association rule mining algorithm, was proposed in this paper. This new model was based on the support-significant association rule mining method, where the measurement of confidence for association rule was substituted by the significant of association rule that was a better evaluation standard for association rules. Data experiment for customer segmentation from UCI indicated the effective of this new model.
NASA Astrophysics Data System (ADS)
Alexandre, E.; Cuadra, L.; Nieto-Borge, J. C.; Candil-García, G.; del Pino, M.; Salcedo-Sanz, S.
2015-08-01
Wave parameters computed from time series measured by buoys (significant wave height Hs, mean wave period, etc.) play a key role in coastal engineering and in the design and operation of wave energy converters. Storms or navigation accidents can make measuring buoys break down, leading to missing data gaps. In this paper we tackle the problem of locally reconstructing Hs at out-of-operation buoys by using wave parameters from nearby buoys, based on the spatial correlation among values at neighboring buoy locations. The novelty of our approach for its potential application to problems in coastal engineering is twofold. On one hand, we propose a genetic algorithm hybridized with an extreme learning machine that selects, among the available wave parameters from the nearby buoys, a subset FnSP with nSP parameters that minimizes the Hs reconstruction error. On the other hand, we evaluate to what extent the selected parameters in subset FnSP are good enough in assisting other machine learning (ML) regressors (extreme learning machines, support vector machines and gaussian process regression) to reconstruct Hs. The results show that all the ML method explored achieve a good Hs reconstruction in the two different locations studied (Caribbean Sea and West Atlantic).
Petillion, Saskia; Swinnen, Ans; Defraene, Gilles; Verhoeven, Karolien; Weltens, Caroline; Van den Heuvel, Frank
2014-07-08
The comparison of the pencil beam dose calculation algorithm with modified Batho heterogeneity correction (PBC-MB) and the analytical anisotropic algorithm (AAA) and the mutual comparison of advanced dose calculation algorithms used in breast radiotherapy have focused on the differences between the physical dose distributions. Studies on the radiobiological impact of the algorithm (both on the tumor control and the moderate breast fibrosis prediction) are lacking. We, therefore, investigated the radiobiological impact of the dose calculation algorithm in whole breast radiotherapy. The clinical dose distributions of 30 breast cancer patients, calculated with PBC-MB, were recalculated with fixed monitor units using more advanced algorithms: AAA and Acuros XB. For the latter, both dose reporting modes were used (i.e., dose-to-medium and dose-to-water). Next, the tumor control probability (TCP) and the normal tissue complication probability (NTCP) of each dose distribution were calculated with the Poisson model and with the relative seriality model, respectively. The endpoint for the NTCP calculation was moderate breast fibrosis five years post treatment. The differences were checked for significance with the paired t-test. The more advanced algorithms predicted a significantly lower TCP and NTCP of moderate breast fibrosis then found during the corresponding clinical follow-up study based on PBC calculations. The differences varied between 1% and 2.1% for the TCP and between 2.9% and 5.5% for the NTCP of moderate breast fibrosis. The significant differences were eliminated by determination of algorithm-specific model parameters using least square fitting. Application of the new parameters on a second group of 30 breast cancer patients proved their appropriateness. In this study, we assessed the impact of the dose calculation algorithms used in whole breast radiotherapy on the parameters of the radiobiological models. The radiobiological impact was eliminated by
Hunt, Simon; Meng, Qinggang; Hinde, Chris; Huang, Tingwen
2014-01-01
This paper looks at consensus algorithms for agent cooperation with unmanned aerial vehicles. The foundation is the consensus-based bundle algorithm, which is extended to allow multi-agent tasks requiring agents to cooperate in completing individual tasks. Inspiration is taken from the cognitive behaviours of eusocial animals for cooperation and improved assignments. Using the behaviours observed in bees and ants inspires decentralised algorithms for groups of agents to adapt to changing task demand. Further extensions are provided to improve task complexity handling by the agents with added equipment requirements and task dependencies. We address the problems of handling these challenges and improve the efficiency of the algorithm for these requirements, whilst decreasing the communication cost with a new data structure. The proposed algorithm converges to a conflict-free, feasible solution of which previous algorithms are unable to account for. Furthermore, the algorithm takes into account heterogeneous agents, deadlocking and a method to store assignments for a dynamical environment. Simulation results demonstrate reduced data usage and communication time to come to a consensus on multi-agent tasks.
Hira, Zena M; Trigeorgis, George; Gillies, Duncan F
2014-01-01
Microarray databases are a large source of genetic data, which, upon proper analysis, could enhance our understanding of biology and medicine. Many microarray experiments have been designed to investigate the genetic mechanisms of cancer, and analytical approaches have been applied in order to classify different types of cancer or distinguish between cancerous and non-cancerous tissue. However, microarrays are high-dimensional datasets with high levels of noise and this causes problems when using machine learning methods. A popular approach to this problem is to search for a set of features that will simplify the structure and to some degree remove the noise from the data. The most widely used approach to feature extraction is principal component analysis (PCA) which assumes a multivariate Gaussian model of the data. More recently, non-linear methods have been investigated. Among these, manifold learning algorithms, for example Isomap, aim to project the data from a higher dimensional space onto a lower dimension one. We have proposed a priori manifold learning for finding a manifold in which a representative set of microarray data is fused with relevant data taken from the KEGG pathway database. Once the manifold has been constructed the raw microarray data is projected onto it and clustering and classification can take place. In contrast to earlier fusion based methods, the prior knowledge from the KEGG databases is not used in, and does not bias the classification process--it merely acts as an aid to find the best space in which to search the data. In our experiments we have found that using our new manifold method gives better classification results than using either PCA or conventional Isomap.
Requirement to Publish All Significant Final Actions Under Title I of The Clean Air Act
This document may be of assistance in applying the New Source Review (NSR) air permitting regulations including the Prevention of Significant Deterioration (PSD) requirements. This document is part of the NSR Policy and Guidance Database. Some documents in the database are a scanned or retyped version of a paper photocopy of the original. Although we have taken considerable effort to quality assure the documents, some may contain typographical errors. Contact the office that issued the document if you need a copy of the original.
Kossobokov, V.G.; Romashkova, L.L.; Keilis-Borok, V. I.; Healy, J.H.
1999-01-01
Algorithms M8 and MSc (i.e., the Mendocino Scenario) were used in a real-time intermediate-term research prediction of the strongest earthquakes in the Circum-Pacific seismic belt. Predictions are made by M8 first. Then, the areas of alarm are reduced by MSc at the cost that some earthquakes are missed in the second approximation of prediction. In 1992-1997, five earthquakes of magnitude 8 and above occurred in the test area: all of them were predicted by M8 and MSc identified correctly the locations of four of them. The space-time volume of the alarms is 36% and 18%, correspondingly, when estimated with a normalized product measure of empirical distribution of epicenters and uniform time. The statistical significance of the achieved results is beyond 99% both for M8 and MSc. For magnitude 7.5 + , 10 out of 19 earthquakes were predicted by M8 in 40% and five were predicted by M8-MSc in 13% of the total volume considered. This implies a significance level of 81% for M8 and 92% for M8-MSc. The lower significance levels might result from a global change in seismic regime in 1993-1996, when the rate of the largest events has doubled and all of them become exclusively normal or reversed faults. The predictions are fully reproducible; the algorithms M8 and MSc in complete formal definitions were published before we started our experiment [Keilis-Borok, V.I., Kossobokov, V.G., 1990. Premonitory activation of seismic flow: Algorithm M8, Phys. Earth and Planet. Inter. 61, 73-83; Kossobokov, V.G., Keilis-Borok, V.I., Smith, S.W., 1990. Localization of intermediate-term earthquake prediction, J. Geophys. Res., 95, 19763-19772; Healy, J.H., Kossobokov, V.G., Dewey, J.W., 1992. A test to evaluate the earthquake prediction algorithm, M8. U.S. Geol. Surv. OFR 92-401]. M8 is available from the IASPEI Software Library [Healy, J.H., Keilis-Borok, V.I., Lee, W.H.K. (Eds.), 1997. Algorithms for Earthquake Statistics and Prediction, Vol. 6. IASPEI Software Library]. ?? 1999 Elsevier
IMAGE-BASED VERIFICATION: SOME ADVANTAGES, CHALLENGES, AND ALGORITHM-DRIVEN REQUIREMENTS
Seifert, Allen; McDonald, Benjamin S.; Jarman, Kenneth D.; Robinson, Sean M.; Misner, Alex C.; Miller, Erin A.; White, Timothy A.; Pitts, William K.
2011-06-10
ABSTRACT Imaging technologies may be a particularly useful technique that supports monitoring and verification of deployed and stockpiled nuclear weapons and dismantlement components. However, protecting the sensitive design information requires processing the image behind an information barrier and reporting only non-sensitive attributes related to the image. Reducing images to attributes may destroy some sensitive information, but the challenge remains. For example, reducing the measurement to an attribute such as defined shape and X-ray transmission of an edge might reveal sensitive information relating to shape, size, and material composition. If enough additional information is available to analyze with the attribute, it may still be possible to extract sensitive design information. In spite of these difficulties, the implementation of new treaty requirements may demand image technology as an option. Two fundamental questions are raised: What (minimal) information is needed from imaging to enable verification, and what imaging technologies are appropriate? PNNL is currently developing a suite of image analysis algorithms to define and extract attributes from images for dismantlement and warhead verification and counting scenarios. In this talk, we discuss imaging requirements from the perspective of algorithms operating behind information barriers, and review imaging technologies and their potential advantages for verification. Companion talks will concentrate on the technical aspects of the algorithms.
Zhang, Lei; Wang, Linlin; Du, Bochuan; Wang, Tianjiao; Tian, Pu
2016-01-01
Among non-small cell lung cancer (NSCLC), adenocarcinoma (AC), and squamous cell carcinoma (SCC) are two major histology subtypes, accounting for roughly 40% and 30% of all lung cancer cases, respectively. Since AC and SCC differ in their cell of origin, location within the lung, and growth pattern, they are considered as distinct diseases. Gene expression signatures have been demonstrated to be an effective tool for distinguishing AC and SCC. Gene set analysis is regarded as irrelevant to the identification of gene expression signatures. Nevertheless, we found that one specific gene set analysis method, significance analysis of microarray-gene set reduction (SAMGSR), can be adopted directly to select relevant features and to construct gene expression signatures. In this study, we applied SAMGSR to a NSCLC gene expression dataset. When compared with several novel feature selection algorithms, for example, LASSO, SAMGSR has equivalent or better performance in terms of predictive ability and model parsimony. Therefore, SAMGSR is a feature selection algorithm, indeed. Additionally, we applied SAMGSR to AC and SCC subtypes separately to discriminate their respective stages, that is, stage II versus stage I. Few overlaps between these two resulting gene signatures illustrate that AC and SCC are technically distinct diseases. Therefore, stratified analyses on subtypes are recommended when diagnostic or prognostic signatures of these two NSCLC subtypes are constructed. PMID:27446945
Zhang, Lei; Wang, Linlin; Du, Bochuan; Wang, Tianjiao; Tian, Pu; Tian, Suyan
2016-01-01
Among non-small cell lung cancer (NSCLC), adenocarcinoma (AC), and squamous cell carcinoma (SCC) are two major histology subtypes, accounting for roughly 40% and 30% of all lung cancer cases, respectively. Since AC and SCC differ in their cell of origin, location within the lung, and growth pattern, they are considered as distinct diseases. Gene expression signatures have been demonstrated to be an effective tool for distinguishing AC and SCC. Gene set analysis is regarded as irrelevant to the identification of gene expression signatures. Nevertheless, we found that one specific gene set analysis method, significance analysis of microarray-gene set reduction (SAMGSR), can be adopted directly to select relevant features and to construct gene expression signatures. In this study, we applied SAMGSR to a NSCLC gene expression dataset. When compared with several novel feature selection algorithms, for example, LASSO, SAMGSR has equivalent or better performance in terms of predictive ability and model parsimony. Therefore, SAMGSR is a feature selection algorithm, indeed. Additionally, we applied SAMGSR to AC and SCC subtypes separately to discriminate their respective stages, that is, stage II versus stage I. Few overlaps between these two resulting gene signatures illustrate that AC and SCC are technically distinct diseases. Therefore, stratified analyses on subtypes are recommended when diagnostic or prognostic signatures of these two NSCLC subtypes are constructed.
NASA Astrophysics Data System (ADS)
Kuschenerus, Mieke; Cullen, Robert
2016-08-01
To ensure reliability and precision of wave height estimates for future satellite altimetry missions such as Sentinel 6, reliable parameter retrieval algorithms that can extract significant wave heights up to 20 m have to be established. The retrieved parameters, i.e. the retrieval methods need to be validated extensively on a wide range of possible significant wave heights. Although current missions require wave height retrievals up to 20 m, there is little evidence of systematic validation of parameter retrieval methods for sea states with wave heights above 10 m. This paper provides a definition of a set of simulated sea states with significant wave height up to 20 m, that allow simulation of radar altimeter response echoes for extreme sea states in SAR and low resolution mode. The simulated radar responses are used to derive significant wave height estimates, which can be compared with the initial models, allowing precision estimations of the applied parameter retrieval methods. Thus we establish a validation method for significant wave height retrieval for sea states causing high significant wave heights, to allow improved understanding and planning of future satellite altimetry mission validation.
Violante-Carvalho, Nelson
2005-12-01
Synthetic Aperture Radar (SAR) onboard satellites is the only source of directional wave spectra with continuous and global coverage. Millions of SAR Wave Mode (SWM) imagettes have been acquired since the launch in the early 1990's of the first European Remote Sensing Satellite ERS-1 and its successors ERS-2 and ENVISAT, which has opened up many possibilities specially for wave data assimilation purposes. The main aim of data assimilation is to improve the forecasting introducing available observations into the modeling procedures in order to minimize the differences between model estimates and measurements. However there are limitations in the retrieval of the directional spectrum from SAR images due to nonlinearities in the mapping mechanism. The Max-Planck Institut (MPI) scheme, the first proposed and most widely used algorithm to retrieve directional wave spectra from SAR images, is employed to compare significant wave heights retrieved from ERS-1 SAR against buoy measurements and against the WAM wave model. It is shown that for periods shorter than 12 seconds the WAM model performs better than the MPI, despite the fact that the model is used as first guess to the MPI method, that is the retrieval is deteriorating the first guess. For periods longer than 12 seconds, the part of the spectrum that is directly measured by SAR, the performance of the MPI scheme is at least as good as the WAM model.
Code of Federal Regulations, 2010 CFR
2010-07-01
... REGULATIONS Enhanced Treatment for Cryptosporidium Requirements for Sanitary Surveys Performed by Epa § 141.723 Requirements to respond to significant deficiencies identified in sanitary surveys performed by... deficiencies identified in sanitary surveys performed by EPA. 141.723 Section 141.723 Protection of...
Code of Federal Regulations, 2011 CFR
2011-07-01
... REGULATIONS Enhanced Treatment for Cryptosporidium Requirements for Sanitary Surveys Performed by Epa § 141.723 Requirements to respond to significant deficiencies identified in sanitary surveys performed by... deficiencies identified in sanitary surveys performed by EPA. 141.723 Section 141.723 Protection of...
Code of Federal Regulations, 2013 CFR
2013-01-01
... 10 Energy 2 2013-01-01 2013-01-01 false Requirement to publish finding of no significant impact; limitation on Commission action. 51.35 Section 51.35 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED... Environmental Policy Act-Regulations Implementing Section 102(2) Finding of No Significant Impact §...
Code of Federal Regulations, 2011 CFR
2011-01-01
... 10 Energy 2 2011-01-01 2011-01-01 false Requirement to publish finding of no significant impact; limitation on Commission action. 51.35 Section 51.35 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED... Environmental Policy Act-Regulations Implementing Section 102(2) Finding of No Significant Impact §...
Code of Federal Regulations, 2010 CFR
2010-01-01
... 10 Energy 2 2010-01-01 2010-01-01 false Requirement to publish finding of no significant impact; limitation on Commission action. 51.35 Section 51.35 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED... Environmental Policy Act-Regulations Implementing Section 102(2) Finding of No Significant Impact §...
Code of Federal Regulations, 2014 CFR
2014-01-01
... 10 Energy 2 2014-01-01 2014-01-01 false Requirement to publish finding of no significant impact; limitation on Commission action. 51.35 Section 51.35 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED... Environmental Policy Act-Regulations Implementing Section 102(2) Finding of No Significant Impact §...
Code of Federal Regulations, 2012 CFR
2012-01-01
... 10 Energy 2 2012-01-01 2012-01-01 false Requirement to publish finding of no significant impact; limitation on Commission action. 51.35 Section 51.35 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED... Environmental Policy Act-Regulations Implementing Section 102(2) Finding of No Significant Impact §...
“Galileo Galilei-GG”: design, requirements, error budget and significance of the ground prototype
NASA Astrophysics Data System (ADS)
Nobili, A. M.; Bramanti, D.; Comandi, G. L.; Toncelli, R.; Polacco, E.; Chiofalo, M. L.
2003-11-01
“Galileo Galilei-GG” is a proposed experiment in low orbit around the Earth aiming to test the equivalence principle to the level of 1 part in 10 17 at room temperature. A unique feature of GG, which is pivotal to achieve high accuracy at room temperature, is fast rotation in supercritical regime around the symmetry axis of the test cylinders, with very weak coupling in the plane perpendicular to it. Another unique feature of GG is the possibility to fly 2 concentric pairs of test cylinders, the outer pair being made of the same material for detection of spurious effects. GG was originally designed for an equatorial orbit. The much lower launching cost for higher inclinations has made it worth redesigning the experiment for a sun-synchronous orbit. We report the main conclusions of this study, which confirms the feasibility of the original goal of the mission also at high inclination, and conclude by stressing the significance of the ground based prototype of the apparatus proposed for space.
Architectural and Algorithmic Requirements for a Next-Generation System Analysis Code
V.A. Mousseau
2010-05-01
This document presents high-level architectural and system requirements for a next-generation system analysis code (NGSAC) to support reactor safety decision-making by plant operators and others, especially in the context of light water reactor plant life extension. The capabilities of NGSAC will be different from those of current-generation codes, not only because computers have evolved significantly in the generations since the current paradigm was first implemented, but because the decision-making processes that need the support of next-generation codes are very different from the decision-making processes that drove the licensing and design of the current fleet of commercial nuclear power reactors. The implications of these newer decision-making processes for NGSAC requirements are discussed, and resulting top-level goals for the NGSAC are formulated. From these goals, the general architectural and system requirements for the NGSAC are derived.
Enhancements of evolutionary algorithm for the complex requirements of a nurse scheduling problem
NASA Astrophysics Data System (ADS)
Tein, Lim Huai; Ramli, Razamin
2014-12-01
Over the years, nurse scheduling is a noticeable problem that is affected by the global nurse turnover crisis. The more nurses are unsatisfied with their working environment the more severe the condition or implication they tend to leave. Therefore, the current undesirable work schedule is partly due to that working condition. Basically, there is a lack of complimentary requirement between the head nurse's liability and the nurses' need. In particular, subject to highly nurse preferences issue, the sophisticated challenge of doing nurse scheduling is failure to stimulate tolerance behavior between both parties during shifts assignment in real working scenarios. Inevitably, the flexibility in shifts assignment is hard to achieve for the sake of satisfying nurse diverse requests with upholding imperative nurse ward coverage. Hence, Evolutionary Algorithm (EA) is proposed to cater for this complexity in a nurse scheduling problem (NSP). The restriction of EA is discussed and thus, enhancement on the EA operators is suggested so that the EA would have the characteristic of a flexible search. This paper consists of three types of constraints which are the hard, semi-hard and soft constraints that can be handled by the EA with enhanced parent selection and specialized mutation operators. These operators and EA as a whole contribute to the efficiency of constraint handling, fitness computation as well as flexibility in the search, which correspond to the employment of exploration and exploitation principles.
Code of Federal Regulations, 2012 CFR
2012-04-01
... whether an amendment is a section 204(h) amendment. Thus, for example, provisions relating to the right to... amendments significantly reducing the rate of future benefit accrual. 54.4980F-1 Section 54.4980F-1 Internal... (CONTINUED) PENSION EXCISE TAXES § 54.4980F-1 Notice requirements for certain pension plan...
Code of Federal Regulations, 2013 CFR
2013-04-01
... whether an amendment is a section 204(h) amendment. Thus, for example, provisions relating to the right to... amendments significantly reducing the rate of future benefit accrual. 54.4980F-1 Section 54.4980F-1 Internal... (CONTINUED) PENSION EXCISE TAXES § 54.4980F-1 Notice requirements for certain pension plan...
NASA Astrophysics Data System (ADS)
Zhao, Wei; Niu, Tianye; Xing, Lei; Xie, Yaoqin; Xiong, Guanglei; Elmore, Kimberly; Zhu, Jun; Wang, Luyao; Min, James K.
2016-02-01
Increased noise is a general concern for dual-energy material decomposition. Here, we develop an image-domain material decomposition algorithm for dual-energy CT (DECT) by incorporating an edge-preserving filter into the Local HighlY constrained backPRojection reconstruction (HYPR-LR) framework. With effective use of the non-local mean, the proposed algorithm, which is referred to as HYPR-NLM, reduces the noise in dual-energy decomposition while preserving the accuracy of quantitative measurement and spatial resolution of the material-specific dual-energy images. We demonstrate the noise reduction and resolution preservation of the algorithm with an iodine concentrate numerical phantom by comparing the HYPR-NLM algorithm to the direct matrix inversion, HYPR-LR and iterative image-domain material decomposition (Iter-DECT). We also show the superior performance of the HYPR-NLM over the existing methods by using two sets of cardiac perfusing imaging data. The DECT material decomposition comparison study shows that all four algorithms yield acceptable quantitative measurements of iodine concentrate. Direct matrix inversion yields the highest noise level, followed by HYPR-LR and Iter-DECT. HYPR-NLM in an iterative formulation significantly reduces image noise and the image noise is comparable to or even lower than that generated using Iter-DECT. For the HYPR-NLM method, there are marginal edge effects in the difference image, suggesting the high-frequency details are well preserved. In addition, when the search window size increases from 11× 11 to 19× 19 , there are no significant changes or marginal edge effects in the HYPR-NLM difference images. The reference drawn from the comparison study includes: (1) HYPR-NLM significantly reduces the DECT material decomposition noise while preserving quantitative measurements and high-frequency edge information, and (2) HYPR-NLM is robust with respect to parameter selection.
This document may be of assistance in applying the New Source Review (NSR) air permitting regulations including the Prevention of Significant Deterioration (PSD) requirements. This document is part of the NSR Policy and Guidance Database. Some documents in the database are a scanned or retyped version of a paper photocopy of the original. Although we have taken considerable effort to quality assure the documents, some may contain typographical errors. Contact the office that issued the document if you need a copy of the original.
2001-09-01
distribution is unlimited. Vibration control is a very important issue in satellites. The new high-resolution digital imaging devices are especially...isolation applications. Recent advances in Digital Signal Processing techniques made the development of vibration control algorithms possible, but these...Unclassified Unclassified Unclassified UL i ii iv ABSTRACT Vibration control is a very important issue in satellites. The new high-resolution digital
Kang, Ki-woon; Chang, Hyuk-jae; Shim, Hackjoon; Kim, Young-jin; Choi, Byoung-wook; Yang, Woo-in; Shim, Jee-young; Ha, Jongwon; Chung, Namsik
2012-04-01
Automatic computer-assisted detection (auto-CAD) of significant coronary artery disease (CAD) in coronary computed tomography angiography (cCTA) has been shown to have relatively high accuracy. However, to date, scarce data are available regarding the performance of auto-CAD in the setting of acute chest pain. This study sought to demonstrate the feasibility of an auto-CAD algorithm for cCTA in patients presenting with acute chest pain. We retrospectively investigated 398 consecutive patients (229 male, mean age 50±21 years) who had acute chest pain and underwent cCTA between Apr 2007 and Jan 2011 in the emergency department (ED). All cCTA data were analyzed using an auto-CAD algorithm for the detection of >50% CAD on cCTA. The accuracy of auto-CAD was compared with the formal radiology report. In 380 of 398 patients (18 were excluded due to failure of data processing), per-patient analysis of auto-CAD revealed the following: sensitivity 94%, specificity 63%, positive predictive value (PPV) 76%, and negative predictive value (NPV) 89%. After the exclusion of 37 cases that were interpreted as invalid by the auto-CAD algorithm, the NPV was further increased up to 97%, considering the false-negative cases in the formal radiology report, and was confirmed by subsequent invasive angiogram during the index visit. We successfully demonstrated the high accuracy of an auto-CAD algorithm, compared with the formal radiology report, for the detection of >50% CAD on cCTA in the setting of acute chest pain. The auto-CAD algorithm can be used to facilitate the decision-making process in the ED.
Analytic Remote-Sensing Optical Algorithms Requiring Simple and Practical Field Parameter Inputs
NASA Astrophysics Data System (ADS)
Jerslev, Niels Kristian
2001-09-01
Spectral in-water measurements of downward irradiance (Ed ), upward irradiance (Eu ), and nadir radiance (Lu ) are sufficient to calculate the scalar irradiances E0 , E0d , andE0u , the average cosines ,d , and u , the light absorption coefficient a , the backscattering coefficientbb , and the so-called f factor that relates to R , a , and bb . The solar elevation of 42 is a special case in whichd is independent of all variables except solar elevation. The algorithms are valid for solar elevations between 12 and 81 for horizontally stratified clear and turbid deep waters.
Depth of colonization (Zc) is a useful seagrass growth metric that describes seagrass response to light attenuation. Similarly, percent surface irradiance (% SI) at Zc is a measure of seagrass light requirements with applications in seagrass ecology and management. Methods for ...
Quasi-Algorithm Methods and Techniques for Specifying Objective Job/Task Performance Requirements
1978-07-01
contradiction ( Carnap , 1962). Independence is a logical requirement and sometimes difficult to achieve in practical situations. To illustrate the... Carnap , R., Logical foundations of probability (2nd ed.), Chicago: Univ. of Chicago Press, 1962. Chambers, A. N., Development of a taxonomy of human
The maximum depth of colonization (Zc) is a useful measure of seagrass growth that describes response to light attenuation in the water column. However, lack of standardization among methods for estimating Zc has limited the description of habitat requirements at spatial scales m...
NASA Technical Reports Server (NTRS)
Heyward, Ann O.; Reilly, Charles H.; Walton, Eric K.; Mata, Fernando; Olen, Carl
1990-01-01
Creation of an Allotment Plan for the Fixed Satellite Service at the 1988 Space World Administrative Radio Conference (WARC) represented a complex satellite plan synthesis problem, involving a large number of planned and existing systems. Solutions to this problem at WARC-88 required the use of both automated and manual procedures to develop an acceptable set of system positions. Development of an Allotment Plan may also be attempted through solution of an optimization problem, known as the Satellite Location Problem (SLP). Three automated heuristic procedures, developed specifically to solve SLP, are presented. The heuristics are then applied to two specific WARC-88 scenarios. Solutions resulting from the fully automated heuristics are then compared with solutions obtained at WARC-88 through a combination of both automated and manual planning efforts.
Zhao, W; Niu, T; Xing, L; Xiong, G; Elmore, K; Min, J; Zhu, J; Wang, L
2015-06-15
Purpose: To significantly improve dual energy CT (DECT) imaging by establishing a new theoretical framework of image-domain material decomposition with incorporation of edge-preserving techniques. Methods: The proposed algorithm, HYPR-NLM, combines the edge-preserving non-local mean filter (NLM) with the HYPR-LR (Local HighlY constrained backPRojection Reconstruction) framework. Image denoising using HYPR-LR framework depends on the noise level of the composite image which is the average of the different energy images. For DECT, the composite image is the average of high- and low-energy images. To further reduce noise, one may want to increase the window size of the filter of the HYPR-LR, leading resolution degradation. By incorporating the NLM filtering and the HYPR-LR framework, HYPR-NLM reduces the boost material decomposition noise using energy information redundancies as well as the non-local mean. We demonstrate the noise reduction and resolution preservation of the algorithm with both iodine concentration numerical phantom and clinical patient data by comparing the HYPR-NLM algorithm to the direct matrix inversion, HYPR-LR and iterative image-domain material decomposition (Iter-DECT). Results: The results show iterative material decomposition method reduces noise to the lowest level and provides improved DECT images. HYPR-NLM significantly reduces noise while preserving the accuracy of quantitative measurement and resolution. For the iodine concentration numerical phantom, the averaged noise levels are about 2.0, 0.7, 0.2 and 0.4 for direct inversion, HYPR-LR, Iter- DECT and HYPR-NLM, respectively. For the patient data, the noise levels of the water images are about 0.36, 0.16, 0.12 and 0.13 for direct inversion, HYPR-LR, Iter-DECT and HYPR-NLM, respectively. Difference images of both HYPR-LR and Iter-DECT show edge effect, while no significant edge effect is shown for HYPR-NLM, suggesting spatial resolution is well preserved for HYPR-NLM. Conclusion: HYPR
NASA Astrophysics Data System (ADS)
Cook, K. A.; Albano, F.; Nevius, P. E.; Sastry, A. M.
We have expanded and implemented an algorithm for selecting power supplies into a turnkey MATLAB code, "POWER" (power optimization for wireless energy requirements). Our algorithm uses three approaches to system design, specifying either: (1) a single, aggregate power profile; (2) a power system designed to satisfy several power ranges (micro-, milli- and Watt); or (3) a power system designed to be housed within specified spaces within the system. POWER was verified by conducting two case studies on hearing prosthetics: the TICA (LZ 3001) (Baumann group at the Tübingen University) and Amadeus cochlear implant (CI) (WIMS-ERC at the University of Michigan) based on a volume constraint of 2 cm 3. The most suitable solution identified by POWER for the TICA device came from Approach 1, wherein one secondary cell provided 26,000 cycles of 16 h operation. POWER identified Approach 2 as the solution for the WIMS-ERC Amadeus CI, which consisted of 1 cell for the microWatt power range and 1 cell for the milliWatt range (4.43 cm 3, ∼55% higher than the target volume), and provided 3280 cycles of 16 h operation (including re-charge of the batteries). Future work will be focused on continuously improving our present tool.
Code of Federal Regulations, 2010 CFR
2010-04-01
... amendments significantly reducing the rate of future benefit accrual. 54.4980F-1 Section 54.4980F-1 Internal... significantly reducing the rate of future benefit accrual. The following questions and answers concern the... a plan amendment of an applicable pension plan that significantly reduces the rate of future...
NASA Technical Reports Server (NTRS)
Abrams, D.; Williams, C.
1999-01-01
This thesis describes several new quantum algorithms. These include a polynomial time algorithm that uses a quantum fast Fourier transform to find eigenvalues and eigenvectors of a Hamiltonian operator, and that can be applied in cases for which all know classical algorithms require exponential time.
NASA Technical Reports Server (NTRS)
Hinchey, Michael G. (Inventor); Margaria, Tiziana (Inventor); Rash, James L. (Inventor); Rouff, Christopher A. (Inventor); Steffen, Bernard (Inventor)
2010-01-01
Systems, methods and apparatus are provided through which in some embodiments, automata learning algorithms and techniques are implemented to generate a more complete set of scenarios for requirements based programming. More specifically, a CSP-based, syntax-oriented model construction, which requires the support of a theorem prover, is complemented by model extrapolation, via automata learning. This may support the systematic completion of the requirements, the nature of the requirement being partial, which provides focus on the most prominent scenarios. This may generalize requirement skeletons by extrapolation and may indicate by way of automatically generated traces where the requirement specification is too loose and additional information is required.
Code of Federal Regulations, 2013 CFR
2013-07-01
... before calling NRC. National Response Center—1-800-424-8802 or direct telephone: 202-267-2675. Were...) Piping rupture; (E) Piping leak, both under pressure and not under pressure, if applicable; (F) Explosion... resources necessary to provide aerial oil tracking capabilities required in this subpart. The oil...
Code of Federal Regulations, 2011 CFR
2011-07-01
... before calling NRC. National Response Center—1-800-424-8802 or direct telephone: 202-267-2675. Were...) Piping rupture; (E) Piping leak, both under pressure and not under pressure, if applicable; (F) Explosion... resources necessary to provide aerial oil tracking capabilities required in this subpart. The oil...
Code of Federal Regulations, 2014 CFR
2014-07-01
... before calling NRC. National Response Center—1-800-424-8802 or direct telephone: 202-267-2675. Were...) Piping rupture; (E) Piping leak, both under pressure and not under pressure, if applicable; (F) Explosion... resources necessary to provide aerial oil tracking capabilities required in this subpart. The oil...
Code of Federal Regulations, 2012 CFR
2012-07-01
... before calling NRC. National Response Center—1-800-424-8802 or direct telephone: 202-267-2675. Were...) Piping rupture; (E) Piping leak, both under pressure and not under pressure, if applicable; (F) Explosion... resources necessary to provide aerial oil tracking capabilities required in this subpart. The oil...
Code of Federal Regulations, 2010 CFR
2010-07-01
... Type—Above ground (Y/N) Below ground (Y/N) Unknown Facility Capacity Tank Capacity Latitude Degrees... Operations; (F) Planning; (G) Logistics support; and (H) Finance. (iv) This subsection of the plan must... required to support the effective daily application capacity (EDAC) of each dispersant-application...
NASA Technical Reports Server (NTRS)
1975-01-01
Energy consumption in the United States has risen in response to both increasing population and to increasing levels of affluence. Depletion of domestic energy reserves requires consumption modulation, production of fossil fuels, more efficient conversion techniques, and large scale transitions to non-fossile fuel energy sources. Widening disparity between the wealthy and poor nations of the world contributes to trends that increase the likelihood of group action by the lesser developed countries to achieve political and economic goals. The formation of anticartel cartels is envisioned.
Hummel, H E; Eisinger, M T; Hein, D F; Breuer, M; Schmid, S; Leithold, G
2012-01-01
Pheromone effects discovered some 130 years, but scientifically defined just half a century ago, are a great bonus for basic and applied biology. Specifically, pest management efforts have been advanced in many insect orders, either for purposes or monitoring, mass trapping, or for mating disruption. Finding and applying a new search algorithm, nearly 20,000 entries in the pheromone literature have been counted, a number much higher than originally anticipated. This compilation contains identified and thus synthesizable structures for all major orders of insects. Among them are hundreds of agriculturally significant insect pests whose aggregated damages and costly control measures range in the multibillions of dollars annually. Unfortunately, and despite a lot of effort within the international entomological scene, the number of efficient and cheap engineering solutions for dispensing pheromones under variable field conditions is uncomfortably lagging behind. Some innovative approaches are cited from the relevant literature in an attempt to rectify this situation. Recently, specifically designed electrospun organic nanofibers offer a lot of promise. With their use, the mating communication of vineyard insects like Lobesia botrana (Lep.: Tortricidae) can be disrupted for periods of seven weeks.
NASA Technical Reports Server (NTRS)
Rogers, David
1991-01-01
G/SPLINES are a hybrid of Friedman's Multivariable Adaptive Regression Splines (MARS) algorithm with Holland's Genetic Algorithm. In this hybrid, the incremental search is replaced by a genetic search. The G/SPLINE algorithm exhibits performance comparable to that of the MARS algorithm, requires fewer least squares computations, and allows significantly larger problems to be considered.
Best, J; Bilgi, H; Heider, D; Schotten, C; Manka, P; Bedreli, S; Gorray, M; Ertle, J; van Grunsven, L A; Dechêne, A
2016-12-01
Background: Hepatocellular carcinoma (HCC) is one of the leading causes of death in cirrhotic patients worldwide. The detection rate for early stage HCC remains low despite screening programs. Thus, the majority of HCC cases are detected at advanced tumor stages with limited treatment options. To facilitate earlier diagnosis, this study aims to validate the added benefit of the combination of AFP, the novel biomarkers AFP-L3, DCP, and an associated novel diagnostic algorithm called GALAD. Material and methods: Between 2007 and 2008 and from 2010 to 2012, 285 patients newly diagnosed with HCC and 402 control patients suffering from chronic liver disease were enrolled. AFP, AFP-L3, and DCP were measured using the µTASWako i30 automated immunoanalyzer. The diagnostic performance of biomarkers was measured as single parameters and in a logistic regression model. Furthermore, a diagnostic algorithm (GALAD) based on gender, age, and the biomarkers mentioned above was validated. Results: AFP, AFP-L3, and DCP showed comparable sensitivities and specifities for HCC detection. The combination of all biomarkers had the highest sensitivity with decreased specificity. In contrast, utilization of the biomarker-based GALAD score resulted in a superior specificity of 93.3 % and sensitivity of 85.6 %. In the scenario of BCLC 0/A stage HCC, the GALAD algorithm provided the highest overall AUROC with 0.9242, which was superior to any other marker combination. Conclusions: We could demonstrate in our cohort the superior detection of early stage HCC with the combined use of the respective biomarkers and in particular GALAD even in AFP-negative tumors.
NASA Astrophysics Data System (ADS)
Wood, Christopher J.; Spekkens, Robert W.
2015-03-01
An active area of research in the fields of machine learning and statistics is the development of causal discovery algorithms, the purpose of which is to infer the causal relations that hold among a set of variables from the correlations that these exhibit . We apply some of these algorithms to the correlations that arise for entangled quantum systems. We show that they cannot distinguish correlations that satisfy Bell inequalities from correlations that violate Bell inequalities, and consequently that they cannot do justice to the challenges of explaining certain quantum correlations causally. Nonetheless, by adapting the conceptual tools of causal inference, we can show that any attempt to provide a causal explanation of nonsignalling correlations that violate a Bell inequality must contradict a core principle of these algorithms, namely, that an observed statistical independence between variables should not be explained by fine-tuning of the causal parameters. In particular, we demonstrate the need for such fine-tuning for most of the causal mechanisms that have been proposed to underlie Bell correlations, including superluminal causal influences, superdeterminism (that is, a denial of freedom of choice of settings), and retrocausal influences which do not introduce causal cycles.
Gordon, Paul M. K.; Khan, Aneal; Sajid, Umair; Chang, Nicholas; Suresh, Varun; Dimnik, Leo; Lamont, Ryan E.; Parboosingh, Jillian S.; Martin, Steven R.; Pon, Richard T.; Weatherhead, Jene; Wegener, Shelly; Isaac, Debra; Greenway, Steven C.
2016-01-01
Cell-free DNA (cfDNA) has significant potential in the diagnosis and monitoring of clinical conditions. However, accurately and easily distinguishing the relative proportion of DNA molecules in a mixture derived from two different sources (i.e., donor and recipient tissues after transplantation) is challenging. In human cellular transplantation, there is currently no useable method to detect in vivo engraftment, and blood-based non-invasive tests for allograft rejection in solid organ transplantation are either non-specific or absent. Elevated levels of donor cfDNA have been shown to correlate with solid organ rejection, but complex methodology limits implementation of this promising biomarker. We describe a cost-effective method to quantify donor cfDNA in recipient plasma using a panel of high-frequency single nucleotide polymorphisms, next-generation (semiconductor) sequencing, and a novel mixture model algorithm. In vitro, our method accurately and rapidly determined donor:recipient DNA admixture. For in vivo testing, donor cfDNA was serially quantified in an infant with a urea cycle disorder after receiving six daily infusions of donor liver cells. Donor cfDNA isolated from 1 to 2 ml of recipient plasma was detected as late as 24 weeks after infusion suggesting engraftment. The percentage of circulating donor cfDNA was also assessed in pediatric and adult heart transplant recipients undergoing routine endomyocardial biopsy with levels observed to be stable over time and generally measuring <1% in cases without moderate or severe cellular rejection. Unlike existing non-invasive methods used to define the proportion of donor cfDNA in solid organ transplant patients, our assay does not require sex mismatch, donor genotyping, or whole-genome sequencing and potentially has broad application to detect cellular engraftment or allograft injury after transplantation. PMID:27713880
Klein, Kimberly
2010-01-01
The American Recovery and Reinvestment Act of 2009 (ARRA) has set forth legislation for the healthcare community to achieve adoption of electronic health records (EHR), as well as form data standards, health information exchanges (HIE) and compliance with more stringent security and privacy controls under the HITECH Act. While the Office of the National Coordinator for Health Information Technology (ONCHIT) works on the definition of both "meaningful use" and "certification" of information technology systems, providers in particular must move forward with their IT initiatives to achieve the basic requirements for Medicare and Medicaid incentives starting in 2011, and avoid penalties that will reduce reimbursement beginning in 2015. In addition, providers, payors, government and non-government stakeholders will all have to balance the implementation of EHRs, working with HIEs, at the same time that they must upgrade their systems to be in compliance with ICD-10 and HIPAA 5010 code sets. Compliance deadlines for EHRs and HIEs begin in 2011, while ICD-10 diagnosis and procedure code sets compliance is required by October 2013 and HIPAA 5010 transaction sets, with one exception, is required by January 1, 2012. In order to accomplish these strategic and mandatory initiatives successfully and simultaneously, healthcare organizations will require significant and thoughtful planning, prioritization and execution.
NASA Technical Reports Server (NTRS)
Lu, Yun-Chi; Chang, Hyo Duck; Krupp, Brian; Kumar, Ravindar; Swaroop, Anand
1992-01-01
Volume 3 assists Earth Observing System (EOS) investigators in locating required non-EOS data products by identifying their non-EOS input requirements and providing the information on data sets available at various Distributed Active Archive Centers (DAAC's), including those from Pathfinder Activities and Earth Probes. Volume 3 is intended to complement, not to duplicate, the the EOSDIS Science Data Plan (SDP) by providing detailed data set information which was not presented in the SDP. Section 9 of this volume discusses the algorithm summary tables containing information on retrieval algorithms, expected outputs and required input data. Section 10 describes the non-EOS input requirements of instrument teams and IDS investigators. Also described are the current and future data holdings of the original seven DAACS and data products planned from the future missions and projects including Earth Probes and Pathfinder Activities. Section 11 describes source of information used in compiling data set information presented in this volume. A list of data set attributes used to describe various data sets is presented in section 12 along with their descriptions. Finally, Section 13 presents the SPSO's future plan to improve this report .
NASA Astrophysics Data System (ADS)
Coudarcher, Rémi; Duculty, Florent; Serot, Jocelyn; Jurie, Frédéric; Derutin, Jean-Pierre; Dhome, Michel
2005-12-01
SKiPPER is a SKeleton-based Parallel Programming EnviRonment being developed since 1996 and running at LASMEA Laboratory, the Blaise-Pascal University, France. The main goal of the project was to demonstrate the applicability of skeleton-based parallel programming techniques to the fast prototyping of reactive vision applications. This paper deals with the special features embedded in the latest version of the project: algorithmic skeleton nesting capabilities and a fully dynamic operating model. Throughout the case study of a complete and realistic image processing application, in which we have pointed out the requirement for skeleton nesting, we are presenting the operating model of this feature. The work described here is one of the few reported experiments showing the application of skeleton nesting facilities for the parallelisation of a realistic application, especially in the area of image processing. The image processing application we have chosen is a 3D face-tracking algorithm from appearance.
Algorithms and Algorithmic Languages.
ERIC Educational Resources Information Center
Veselov, V. M.; Koprov, V. M.
This paper is intended as an introduction to a number of problems connected with the description of algorithms and algorithmic languages, particularly the syntaxes and semantics of algorithmic languages. The terms "letter, word, alphabet" are defined and described. The concept of the algorithm is defined and the relation between the algorithm and…
Shaikh, W A
1999-01-01
Budesonide, an inhaled corticosteroid is used routinely in the treatment of bronchial asthma and rhinitis. Although inhaled corticosteroids in therapeutic doses are unlikely to result in systemic side effects, there is as yet skepticism about their routine and prolonged use. The aim of this study was to determine whether budesonide inhalation through a metered dose inhaler, when exhaled through the nose could result in a reduction in the dose requirement of budesonide metered nasal spray in patients having perennial allergic asthma with rhinitis. This study was an open, parallel, comparative, crossover trial in which 49 young patients having perennial allergic asthma with rhinitis were divided into two groups and administered either a combination of budesonide metered dose inhaler with a budesonide nasal spray or a budesonide inhaler alone, which was to be exhaled through the nose. Both groups were later crossed over and weekly symptom scores and peak nasal inspiratory flow rates were monitored during each phase of the study. Finally, patients who volunteered from both groups were instructed to note the reduction in dose requirement of budesonide nasal spray while using a budesonide inhaler and exhaling it through the nose. The results of this study reveal that when a budesonide inhaler is exhaled through the nose, it results in an improvement in symptom scores and peak nasal inspiratory flow rates, which were significantly less than those obtained in the group using both a budesonide nasal spray and a metered dose inhaler. In addition, exhaling budesonide through the nose results in a 40.1% reduction in the dose requirement of a budesonide nasal spray, which is statistically significant (p < 0.001).
D' Antona, G.; Cirant, S.; Farina, D.; Gandini, F.; Lazzaro, E.; Treuterer, W.; Manini, A.
2008-03-12
The diagnostics requirements for the control of NTM instabilities is outlined stressing the importance of correctly managing the estimate uncertainty by the control system. A methodology for the Bayesian assimilation of model predictions and observations is outlined together with an example of application.
Tsui, Po-Hsiang
2012-04-01
The Nakagami image is a complementary imaging mode for pulse-echo ultrasound B-scan to characterize tissues. White noise in anechoic areas induces artifacts in the Nakagami image. Recently, we proposed a noise-assisted correlation algorithm (NCA) for suppressing the Nakagami artifact. In the NCA, artificial white noise is intentionally added twice to backscattered signals to produce two noisy data, which are used to establish a correlation profile for rejecting noise. This study explored the effects of artificial noise level on the NCA to suppress the artifact of the Nakagami image. Simulations were conducted to produce B-mode images of anechoic regions under signal-to-noise ratios (SNRs) of 20, 10 and 5 dB. Various artificial noise levels ranging from 0.1- to 1-fold of the intrinsic noise amplitude were used in the NCA for constructing the Nakagami images. Phantom experiments were conducted to validate the performance of using the optimal artificial noise level suggested by the simulation results to suppress the Nakagami artifacts by the NCA. The simulation results indicated that the artifacts of the Nakagami image in the anechoic regions can be gradually suppressed by increasing the artificial noise level used in the NCA to improve the image contrast-to-noise ratio (CNR). The CNR of the Nakagami image reached 20 dB when the artificial noise level was 0.7-fold of the intrinsic noise amplitude. This criterion was demonstrated by the phantom results to provide the NCA with an excellent ability to obtain artifact-free Nakagami images.
Inference from matrix products: a heuristic spin glass algorithm
Hastings, Matthew B
2008-01-01
We present an algorithm for finding ground states of two-dimensional spin-glass systems based on ideas from matrix product states in quantum information theory. The algorithm works directly at zero temperature and defines an approximation to the energy whose accuracy depends on a parameter k. We test the algorithm against exact methods on random field and random bond Ising models, and we find that accurate results require a k which scales roughly polynomially with the system size. The algorithm also performs well when tested on small systems with arbitrary interactions, where no fast, exact algorithms exist. The time required is significantly less than Monte Carlo schemes.
A new frame-based registration algorithm
NASA Technical Reports Server (NTRS)
Yan, C. H.; Whalen, R. T.; Beaupre, G. S.; Sumanaweera, T. S.; Yen, S. Y.; Napel, S.
1998-01-01
This paper presents a new algorithm for frame registration. Our algorithm requires only that the frame be comprised of straight rods, as opposed to the N structures or an accurate frame model required by existing algorithms. The algorithm utilizes the full 3D information in the frame as well as a least squares weighting scheme to achieve highly accurate registration. We use simulated CT data to assess the accuracy of our algorithm. We compare the performance of the proposed algorithm to two commonly used algorithms. Simulation results show that the proposed algorithm is comparable to the best existing techniques with knowledge of the exact mathematical frame model. For CT data corrupted with an unknown in-plane rotation or translation, the proposed technique is also comparable to the best existing techniques. However, in situations where there is a discrepancy of more than 2 mm (0.7% of the frame dimension) between the frame and the mathematical model, the proposed technique is significantly better (p < or = 0.05) than the existing techniques. The proposed algorithm can be applied to any existing frame without modification. It provides better registration accuracy and is robust against model mis-match. It allows greater flexibility on the frame structure. Lastly, it reduces the frame construction cost as adherence to a concise model is not required.
Algorithms for improved performance in cryptographic protocols.
Schroeppel, Richard Crabtree; Beaver, Cheryl Lynn
2003-11-01
Public key cryptographic algorithms provide data authentication and non-repudiation for electronic transmissions. The mathematical nature of the algorithms, however, means they require a significant amount of computation, and encrypted messages and digital signatures possess high bandwidth. Accordingly, there are many environments (e.g. wireless, ad-hoc, remote sensing networks) where public-key requirements are prohibitive and cannot be used. The use of elliptic curves in public-key computations has provided a means by which computations and bandwidth can be somewhat reduced. We report here on the research conducted in an LDRD aimed to find even more efficient algorithms and to make public-key cryptography available to a wider range of computing environments. We improved upon several algorithms, including one for which a patent has been applied. Further we discovered some new problems and relations on which future cryptographic algorithms may be based.
Ali, Imad; Ahmad, Salahuddin
2013-10-01
To compare the doses calculated using the BrainLAB pencil beam (PB) and Monte Carlo (MC) algorithms for tumors located in various sites including the lung and evaluate quality assurance procedures required for the verification of the accuracy of dose calculation. The dose-calculation accuracy of PB and MC was also assessed quantitatively with measurement using ionization chamber and Gafchromic films placed in solid water and heterogeneous phantoms. The dose was calculated using PB convolution and MC algorithms in the iPlan treatment planning system from BrainLAB. The dose calculation was performed on the patient's computed tomography images with lesions in various treatment sites including 5 lungs, 5 prostates, 4 brains, 2 head and necks, and 2 paraspinal tissues. A combination of conventional, conformal, and intensity-modulated radiation therapy plans was used in dose calculation. The leaf sequence from intensity-modulated radiation therapy plans or beam shapes from conformal plans and monitor units and other planning parameters calculated by the PB were identical for calculating dose with MC. Heterogeneity correction was considered in both PB and MC dose calculations. Dose-volume parameters such as V95 (volume covered by 95% of prescription dose), dose distributions, and gamma analysis were used to evaluate the calculated dose by PB and MC. The measured doses by ionization chamber and EBT GAFCHROMIC film in solid water and heterogeneous phantoms were used to quantitatively asses the accuracy of dose calculated by PB and MC. The dose-volume histograms and dose distributions calculated by PB and MC in the brain, prostate, paraspinal, and head and neck were in good agreement with one another (within 5%) and provided acceptable planning target volume coverage. However, dose distributions of the patients with lung cancer had large discrepancies. For a plan optimized with PB, the dose coverage was shown as clinically acceptable, whereas in reality, the MC showed a
Ali, Imad; Ahmad, Salahuddin
2013-01-01
To compare the doses calculated using the BrainLAB pencil beam (PB) and Monte Carlo (MC) algorithms for tumors located in various sites including the lung and evaluate quality assurance procedures required for the verification of the accuracy of dose calculation. The dose-calculation accuracy of PB and MC was also assessed quantitatively with measurement using ionization chamber and Gafchromic films placed in solid water and heterogeneous phantoms. The dose was calculated using PB convolution and MC algorithms in the iPlan treatment planning system from BrainLAB. The dose calculation was performed on the patient's computed tomography images with lesions in various treatment sites including 5 lungs, 5 prostates, 4 brains, 2 head and necks, and 2 paraspinal tissues. A combination of conventional, conformal, and intensity-modulated radiation therapy plans was used in dose calculation. The leaf sequence from intensity-modulated radiation therapy plans or beam shapes from conformal plans and monitor units and other planning parameters calculated by the PB were identical for calculating dose with MC. Heterogeneity correction was considered in both PB and MC dose calculations. Dose-volume parameters such as V95 (volume covered by 95% of prescription dose), dose distributions, and gamma analysis were used to evaluate the calculated dose by PB and MC. The measured doses by ionization chamber and EBT GAFCHROMIC film in solid water and heterogeneous phantoms were used to quantitatively asses the accuracy of dose calculated by PB and MC. The dose-volume histograms and dose distributions calculated by PB and MC in the brain, prostate, paraspinal, and head and neck were in good agreement with one another (within 5%) and provided acceptable planning target volume coverage. However, dose distributions of the patients with lung cancer had large discrepancies. For a plan optimized with PB, the dose coverage was shown as clinically acceptable, whereas in reality, the MC showed a
2008-06-01
concerns for fear of prejudicial treatment . The Army has instituted a program to provide ombudsmen to whom soldiers can bring medical concerns, but it...numerical designations they were assigned yet were reluctant to bring their concerns to their commanders for fear of prejudicial treatment . The Army...does not meet deployment standards and can receive medical treatment at deployed locations that will render them fit for duty.11 DOD guidance requires
Kásler, Miklós; Ottó, Szabolcs; Sólyom, Olimpia
2014-09-07
The authors summarize the basic objectives and scope of the Hungarian Cancer Registry. They review more than 100-year history of the national cancer database and its effects on current cancer data collection activities, which is outstanding in Europe. The compilation deals with the development of information technology, covers points of principle and practical issues such as parallel display and evaluation of mortality and morbidity statistics and their national and international importance concerning public health. The authors underline that reliable data collection and services of the National Cancer Registry are important for the society because they are public health issues with a critical importance for a better understanding of risk factors, prevention and patient care. Restructuring and European harmonization of the Hungarian cancer system are inevitable using a reliable information exchange and service, taking into account national specificities and international requirements.
Blair, C.; Simela, A. T.; Cross, B. J.
2015-01-01
Cases of limb salvage following skeletal trauma involving significant bone loss pose a particular challenge to the reconstructive surgeon. Certain techniques for addressing this complex issue have been advanced in recent years and have met with considerable success. The Masquelet technique involves a staged procedure in which a temporary skeletal stabilization is paired with implantation of an antibiotic spacer and left in place for 6–8 weeks, during which time a “pseudomembrane” forms around the cement spacer. During the second stage of the procedure, the pseudomembrane is incised, the antibiotic spacer removed, and bone graft is placed. We present a case of significant segmental femur loss in a 19-year-old male opting for limb salvage in which a 17-centimeter segmental loss of bone was essentially regrown using a combination of the Masquelet technique with supplemental endosteal fixation. PMID:25789190
Barzilai-Borwein method in graph drawing algorithm based on Kamada-Kawai algorithm
NASA Astrophysics Data System (ADS)
Hasal, Martin; Pospisil, Lukas; Nowakova, Jana
2016-06-01
Extension of Kamada-Kawai algorithm, which was designed for calculating layouts of simple undirected graphs, is presented in this paper. Graphs drawn by Kamada-Kawai algorithm exhibit symmetries, tend to produce aesthetically pleasing and crossing-free layouts for planar graphs. Minimization of Kamada-Kawai algorithm is based on Newton-Raphson method, which needs Hessian matrix of second derivatives of minimized node. Disadvantage of Kamada-Kawai embedder algorithm is computational requirements. This is caused by searching of minimal potential energy of the whole system, which is minimized node by node. The node with highest energy is minimized against all nodes till the local equilibrium state is reached. In this paper with Barzilai-Borwein (BB) minimization algorithm, which needs only gradient for minimum searching, instead of Newton-Raphson method, is worked. It significantly improves the computational time and requirements.
Overview of an Algorithm Plugin Package (APP)
NASA Astrophysics Data System (ADS)
Linda, M.; Tilmes, C.; Fleig, A. J.
2004-12-01
Science software that runs operationally is fundamentally different than software that runs on a scientist's desktop. There are complexities in hosting software for automated production that are necessary and significant. Identifying common aspects of these complexities can simplify algorithm integration. We use NASA's MODIS and OMI data production systems as examples. An Algorithm Plugin Package (APP) is science software that is combined with algorithm-unique elements that permit the algorithm to interface with, and function within, the framework of a data processing system. The framework runs algorithms operationally against large quantities of data. The extra algorithm-unique items are constrained by the design of the data processing system. APPs often include infrastructure that is vastly similar. When the common elements in APPs are identified and abstracted, the cost of APP development, testing, and maintenance will be reduced. This paper is an overview of the extra algorithm-unique pieces that are shared between MODAPS and OMIDAPS APPs. Our exploration of APP structure will help builders of other production systems identify their common elements and reduce algorithm integration costs. Our goal is to complete the development of a library of functions and a menu of implementation choices that reflect common needs of APPs. The library and menu will reduce the time and energy required for science developers to integrate algorithms into production systems.
A novel algorithm for Bluetooth ECG.
Pandya, Utpal T; Desai, Uday B
2012-11-01
In wireless transmission of ECG, data latency will be significant when battery power level and data transmission distance are not maintained. In applications like home monitoring or personalized care, to overcome the joint effect of previous issues of wireless transmission and other ECG measurement noises, a novel filtering strategy is required. Here, a novel algorithm, identified as peak rejection adaptive sampling modified moving average (PRASMMA) algorithm for wireless ECG is introduced. This algorithm first removes error in bit pattern of received data if occurred in wireless transmission and then removes baseline drift. Afterward, a modified moving average is implemented except in the region of each QRS complexes. The algorithm also sets its filtering parameters according to different sampling rate selected for acquisition of signals. To demonstrate the work, a prototyped Bluetooth-based ECG module is used to capture ECG with different sampling rate and in different position of patient. This module transmits ECG wirelessly to Bluetooth-enabled devices where the PRASMMA algorithm is applied on captured ECG. The performance of PRASMMA algorithm is compared with moving average and S-Golay algorithms visually as well as numerically. The results show that the PRASMMA algorithm can significantly improve the ECG reconstruction by efficiently removing the noise and its use can be extended to any parameters where peaks are importance for diagnostic purpose.
A reconstruction algorithm for photoacoustic imaging based on the nonuniform FFT.
Haltmeier, Markus; Scherzer, Otmar; Zangerl, Gerhard
2009-11-01
Fourier reconstruction algorithms significantly outperform conventional backprojection algorithms in terms of computation time. In photoacoustic imaging, these methods require interpolation in the Fourier space domain, which creates artifacts in reconstructed images. We propose a novel reconstruction algorithm that applies the one-dimensional nonuniform fast Fourier transform to photoacoustic imaging. It is shown theoretically and numerically that our algorithm avoids artifacts while preserving the computational effectiveness of Fourier reconstruction.
Advanced Imaging Algorithms for Radiation Imaging Systems
Marleau, Peter
2015-10-01
The intent of the proposed work, in collaboration with University of Michigan, is to develop the algorithms that will bring the analysis from qualitative images to quantitative attributes of objects containing SNM. The first step to achieving this is to develop an indepth understanding of the intrinsic errors associated with the deconvolution and MLEM algorithms. A significant new effort will be undertaken to relate the image data to a posited three-dimensional model of geometric primitives that can be adjusted to get the best fit. In this way, parameters of the model such as sizes, shapes, and masses can be extracted for both radioactive and non-radioactive materials. This model-based algorithm will need the integrated response of a hypothesized configuration of material to be calculated many times. As such, both the MLEM and the model-based algorithm require significant increases in calculation speed in order to converge to solutions in practical amounts of time.
NASA Technical Reports Server (NTRS)
Wang, Lui; Bayer, Steven E.
1991-01-01
Genetic algorithms are mathematical, highly parallel, adaptive search procedures (i.e., problem solving methods) based loosely on the processes of natural genetics and Darwinian survival of the fittest. Basic genetic algorithms concepts are introduced, genetic algorithm applications are introduced, and results are presented from a project to develop a software tool that will enable the widespread use of genetic algorithm technology.
NOSS altimeter algorithm specifications
NASA Technical Reports Server (NTRS)
Hancock, D. W.; Forsythe, R. G.; Mcmillan, J. D.
1982-01-01
A description of all algorithms required for altimeter processing is given. Each description includes title, description, inputs/outputs, general algebraic sequences and data volume. All required input/output data files are described and the computer resources required for the entire altimeter processing system were estimated. The majority of the data processing requirements for any radar altimeter of the Seasat-1 type are scoped. Additions and deletions could be made for the specific altimeter products required by other projects.
A fast and efficient algorithm for Slater determinant updates in quantum Monte Carlo simulations.
Nukala, Phani K V V; Kent, P R C
2009-05-28
We present an efficient low-rank updating algorithm for updating the trial wave functions used in quantum Monte Carlo (QMC) simulations. The algorithm is based on low-rank updating of the Slater determinants. In particular, the computational complexity of the algorithm is O(kN) during the kth step compared to traditional algorithms that require O(N(2)) computations, where N is the system size. For single determinant trial wave functions the new algorithm is faster than the traditional O(N(2)) Sherman-Morrison algorithm for up to O(N) updates. For multideterminant configuration-interaction-type trial wave functions of M+1 determinants, the new algorithm is significantly more efficient, saving both O(MN(2)) work and O(MN(2)) storage. The algorithm enables more accurate and significantly more efficient QMC calculations using configuration-interaction-type wave functions.
Investigation of registration algorithms for the automatic tile processing system
NASA Technical Reports Server (NTRS)
Tamir, Dan E.
1995-01-01
The Robotic Tile Inspection System (RTPS), under development in NASA-KSC, is expected to automate the processes of post-flight re-water-proofing and the process of inspection of the Shuttle heat absorbing tiles. An important task of the robot vision sub-system is to register the 'real-world' coordinates with the coordinates of the robot model of the Shuttle tiles. The model coordinates relate to a tile data-base and pre-flight tile-images. In the registration process, current (post-flight) images are aligned with pre-flight images to detect the rotation and translation displacement required for the coordinate systems rectification. The research activities performed this summer included study and evaluation of the registration algorithm that is currently implemented by the RTPS, as well as, investigation of the utility of other registration algorithms. It has been found that the current algorithm is not robust enough. This algorithm has a success rate of less than 80% and is, therefore, not suitable for complying with the requirements of the RTPS. Modifications to the current algorithm has been developed and tested. These modifications can improve the performance of the registration algorithm in a significant way. However, this improvement is not sufficient to satisfy system requirements. A new algorithm for registration has been developed and tested. This algorithm presented very high degree of robustness with success rate of 96%.
Totally parallel multilevel algorithms
NASA Technical Reports Server (NTRS)
Frederickson, Paul O.
1988-01-01
Four totally parallel algorithms for the solution of a sparse linear system have common characteristics which become quite apparent when they are implemented on a highly parallel hypercube such as the CM2. These four algorithms are Parallel Superconvergent Multigrid (PSMG) of Frederickson and McBryan, Robust Multigrid (RMG) of Hackbusch, the FFT based Spectral Algorithm, and Parallel Cyclic Reduction. In fact, all four can be formulated as particular cases of the same totally parallel multilevel algorithm, which are referred to as TPMA. In certain cases the spectral radius of TPMA is zero, and it is recognized to be a direct algorithm. In many other cases the spectral radius, although not zero, is small enough that a single iteration per timestep keeps the local error within the required tolerance.
Memory-hazard-aware k-buffer algorithm for order-independent transparency rendering.
Zhang, Nan
2014-02-01
The (k)-buffer algorithm is an efficient GPU-based fragment level sorting algorithm for rendering transparent surfaces. Because of the inherent massive parallelism of GPU stream processors, this algorithm suffers serious read-after-write memory hazards now. In this paper, we introduce an improved (k)-buffer algorithm with error correction coding to combat memory hazards. Our algorithm results in significantly reduced artifacts. While preserving all the merits of the original algorithm, it requires merely OpenGL 3.x support from the GPU, instead of the atomic operations appearing only in the latest OpenGL 4.2 standard. Our algorithm is simple to implement and efficient in performance. Future GPU support for improving this algorithm is also proposed.
Memory-Hazard-Aware K-Buffer Algorithm for Order-Independent Transparency Rendering.
Zhang, Nan
2013-04-04
The k-buffer algorithm is an efficient GPU based fragment level sorting algorithm for rendering transparent surfaces. Because of the inherent massive parallelism of GPU stream processors, this algorithm suffers serious read-after-write memory hazards now. In this paper, we introduce an improved k-buffer algorithm with error correction coding to combat memory hazards. Our algorithm results in significantly reduced artifacts. While preserving all the merits of the original algorithm, it requires merely OpenGL 3.x support from the GPU, instead of the atomic operations appearing only in the latest OpenGL 4.2 standard. Our algorithm is simple to implement and efficient in performance. Future GPU support for improving this algorithm is also proposed.
Automatic design of decision-tree algorithms with evolutionary algorithms.
Barros, Rodrigo C; Basgalupp, Márcio P; de Carvalho, André C P L F; Freitas, Alex A
2013-01-01
This study reports the empirical analysis of a hyper-heuristic evolutionary algorithm that is capable of automatically designing top-down decision-tree induction algorithms. Top-down decision-tree algorithms are of great importance, considering their ability to provide an intuitive and accurate knowledge representation for classification problems. The automatic design of these algorithms seems timely, given the large literature accumulated over more than 40 years of research in the manual design of decision-tree induction algorithms. The proposed hyper-heuristic evolutionary algorithm, HEAD-DT, is extensively tested using 20 public UCI datasets and 10 microarray gene expression datasets. The algorithms automatically designed by HEAD-DT are compared with traditional decision-tree induction algorithms, such as C4.5 and CART. Experimental results show that HEAD-DT is capable of generating algorithms which are significantly more accurate than C4.5 and CART.
Algorithms for the Markov entropy decomposition
NASA Astrophysics Data System (ADS)
Ferris, Andrew J.; Poulin, David
2013-05-01
The Markov entropy decomposition (MED) is a recently proposed, cluster-based simulation method for finite temperature quantum systems with arbitrary geometry. In this paper, we detail numerical algorithms for performing the required steps of the MED, principally solving a minimization problem with a preconditioned Newton's algorithm, as well as how to extract global susceptibilities and thermal responses. We demonstrate the power of the method with the spin-1/2 XXZ model on the 2D square lattice, including the extraction of critical points and details of each phase. Although the method shares some qualitative similarities with exact diagonalization, we show that the MED is both more accurate and significantly more flexible.
Fast autodidactic adaptive equalization algorithms
NASA Astrophysics Data System (ADS)
Hilal, Katia
Autodidactic equalization by adaptive filtering is addressed in a mobile radio communication context. A general method, using an adaptive stochastic gradient Bussgang type algorithm, to deduce two low cost computation algorithms is given: one equivalent to the initial algorithm and the other having improved convergence properties thanks to a block criteria minimization. Two start algorithms are reworked: the Godard algorithm and the decision controlled algorithm. Using a normalization procedure, and block normalization, the performances are improved, and their common points are evaluated. These common points are used to propose an algorithm retaining the advantages of the two initial algorithms. This thus inherits the robustness of the Godard algorithm and the precision and phase correction of the decision control algorithm. The work is completed by a study of the stable states of Bussgang type algorithms and of the stability of the Godard algorithms, initial and normalized. The simulation of these algorithms, carried out in a mobile radio communications context, and under severe conditions on the propagation channel, gave a 75% reduction in the number of samples required for the processing in relation with the initial algorithms. The improvement of the residual error was of a much lower return. These performances are close to making possible the use of autodidactic equalization in the mobile radio system.
Fast Combinatorial Algorithm for the Solution of Linearly Constrained Least Squares Problems
Van Benthem, Mark H.; Keenan, Michael R.
2008-11-11
A fast combinatorial algorithm can significantly reduce the computational burden when solving general equality and inequality constrained least squares problems with large numbers of observation vectors. The combinatorial algorithm provides a mathematically rigorous solution and operates at great speed by reorganizing the calculations to take advantage of the combinatorial nature of the problems to be solved. The combinatorial algorithm exploits the structure that exists in large-scale problems in order to minimize the number of arithmetic operations required to obtain a solution.
Helm, A T; Karski, M T; Parsons, S J; Sampath, J S; Bale, R S
2003-05-01
We prospectively audited 79 patients undergoing primary knee or hip arthroplasty (38 knees, 41 hips) and found that 66% (58% of knees, 73% of hips) had at least one unit of blood transfused postoperatively, with a mean transfusion requirement of 13 units per patient (1.1 for knees, 0 to 6; 1.5 for hips, 0 to 4). We then established a new protocol for postoperative blood transfusion. This requires the calculation of the maximum allowable blood loss (MABL) that each individual patient can safely lose based upon their weight and preoperative haematocrit. The total blood loss up to this volume is replaced with colloid. When a patient's total blood loss reaches their MABL their haematocrit is measured at the bedside using the Microspin system (Bayer plc, Newbury, UK). If their haematocrit is low (< 0.30 for men, < 0.27 for women), blood is transfused. As a safety net all patients have their haemoglobin formally checked on days 1, 2, and 3 after surgery and have a transfusion if the haemoglobin levels are less than 8.5 g/dl. We conducted a further audit of 82 patients (35 knees, 47 hips) after the introduction of this protocol. Under the new protocol only 24% of patients required blood (11% of knees, 34% of hips) with a mean transfusion requirement of 0.56 units per patient (0.26 for knees, 0 to 4; 0.79 for hips, 0 to 4). The use of clinical audit and the introduction of strict guidelines for transfusion can change transfusion practice and result in improved patient care. Our transfusion protocol is a simple and effective method of keeping transfusion to a minimum and is particularly useful in departments which do not have the facility to use autologous blood or reinfusion drains for relective orthopaedic surgery.
Tactical Synthesis Of Efficient Global Search Algorithms
NASA Technical Reports Server (NTRS)
Nedunuri, Srinivas; Smith, Douglas R.; Cook, William R.
2009-01-01
Algorithm synthesis transforms a formal specification into an efficient algorithm to solve a problem. Algorithm synthesis in Specware combines the formal specification of a problem with a high-level algorithm strategy. To derive an efficient algorithm, a developer must define operators that refine the algorithm by combining the generic operators in the algorithm with the details of the problem specification. This derivation requires skill and a deep understanding of the problem and the algorithmic strategy. In this paper we introduce two tactics to ease this process. The tactics serve a similar purpose to tactics used for determining indefinite integrals in calculus, that is suggesting possible ways to attack the problem.
NOSS Altimeter Detailed Algorithm specifications
NASA Technical Reports Server (NTRS)
Hancock, D. W.; Mcmillan, J. D.
1982-01-01
The details of the algorithms and data sets required for satellite radar altimeter data processing are documented in a form suitable for (1) development of the benchmark software and (2) coding the operational software. The algorithms reported in detail are those established for altimeter processing. The algorithms which required some additional development before documenting for production were only scoped. The algorithms are divided into two levels of processing. The first level converts the data to engineering units and applies corrections for instrument variations. The second level provides geophysical measurements derived from altimeter parameters for oceanographic users.
Fault Tolerant Algorithm for Structured Illumination Microscopy with Incoherent Light
NASA Astrophysics Data System (ADS)
Wang, Kun; Heidingsfelder, Philipp; Gao, Jun; Yu, Liandong; Ott, Peter
2015-04-01
In this contribution we present a new algorithm for structured illumination microscopy with incoherent light. Existing algorithms for determining the contrast values of the focal depth response require a high accurate phase shift of the fringe pattern illumination. The presented algorithm, which is robust against inaccurate phase shift of the fringe pattern, reduces significantly the requirements for the phase shift and consequently the costs of the microscope. The new algorithm was tested by a preliminary experiment, whereby the grating was shifted by an elastic guided micro-motion mechanism employing a low-cost stepper motor replacing the conventional expensive piezo drive. The determined focal depth response is very smooth and corresponds very well to the theoretical focal depth response.
NASA Astrophysics Data System (ADS)
Wolfe, William J.; Wood, David; Sorensen, Stephen E.
1996-12-01
This paper discusses automated scheduling as it applies to complex domains such as factories, transportation, and communications systems. The window-constrained-packing problem is introduced as an ideal model of the scheduling trade offs. Specific algorithms are compared in terms of simplicity, speed, and accuracy. In particular, dispatch, look-ahead, and genetic algorithms are statistically compared on randomly generated job sets. The conclusion is that dispatch methods are fast and fairly accurate; while modern algorithms, such as genetic and simulate annealing, have excessive run times, and are too complex to be practical.
Sobel, E.; Lange, K.; O`Connell, J.R.
1996-12-31
Haplotyping is the logical process of inferring gene flow in a pedigree based on phenotyping results at a small number of genetic loci. This paper formalizes the haplotyping problem and suggests four algorithms for haplotype reconstruction. These algorithms range from exhaustive enumeration of all haplotype vectors to combinatorial optimization by simulated annealing. Application of the algorithms to published genetic analyses shows that manual haplotyping is often erroneous. Haplotyping is employed in screening pedigrees for phenotyping errors and in positional cloning of disease genes from conserved haplotypes in population isolates. 26 refs., 6 figs., 3 tabs.
A Bi-objective Model Inspired Greedy Algorithm for Test Suite Minimization
NASA Astrophysics Data System (ADS)
Parsa, Saeed; Khalilian, Alireza
Regression testing is a critical activity which occurs during the maintenance stage of the software lifecycle. However, it requires large amounts of test cases to assure the attainment of a certain degree of quality. As a result, test suite sizes may grow significantly. To address this issue, Test Suite Reduction techniques have been proposed. However, suite size reduction may lead to significant loss of fault detection efficacy. To deal with this problem, a greedy algorithm is presented in this paper. This algorithm attempts to select a test case which satisfies the maximum number of testing requirements while having minimum overlap in requirements coverage with other test cases. In order to evaluate the proposed algorithm, experiments have been conducted on the Siemens suite and the Space program. The results demonstrate the effectiveness of the proposed algorithm by retaining the fault detection capability of the suites while achieving significant suite size reduction.
Xu, Z N
2014-12-01
In this study, an error analysis is performed to study real water drop images and the corresponding numerically generated water drop profiles for three widely used static contact angle algorithms: the circle- and ellipse-fitting algorithms and the axisymmetric drop shape analysis-profile (ADSA-P) algorithm. The results demonstrate the accuracy of the numerically generated drop profiles based on the Laplace equation. A significant number of water drop profiles with different volumes, contact angles, and noise levels are generated, and the influences of the three factors on the accuracies of the three algorithms are systematically investigated. The results reveal that the above-mentioned three algorithms are complementary. In fact, the circle- and ellipse-fitting algorithms show low errors and are highly resistant to noise for water drops with small/medium volumes and contact angles, while for water drop with large volumes and contact angles just the ADSA-P algorithm can meet accuracy requirement. However, this algorithm introduces significant errors in the case of small volumes and contact angles because of its high sensitivity to noise. The critical water drop volumes of the circle- and ellipse-fitting algorithms corresponding to a certain contact angle error are obtained through a significant amount of computation. To improve the precision of the static contact angle measurement, a more accurate algorithm based on a combination of the three algorithms is proposed. Following a systematic investigation, the algorithm selection rule is described in detail, while maintaining the advantages of the three algorithms and overcoming their deficiencies. In general, static contact angles over the entire hydrophobicity range can be accurately evaluated using the proposed algorithm. The ease of erroneous judgment in static contact angle measurements is avoided. The proposed algorithm is validated by a static contact angle evaluation of real and numerically generated water drop
NASA Astrophysics Data System (ADS)
Xu, Z. N.
2014-12-01
In this study, an error analysis is performed to study real water drop images and the corresponding numerically generated water drop profiles for three widely used static contact angle algorithms: the circle- and ellipse-fitting algorithms and the axisymmetric drop shape analysis-profile (ADSA-P) algorithm. The results demonstrate the accuracy of the numerically generated drop profiles based on the Laplace equation. A significant number of water drop profiles with different volumes, contact angles, and noise levels are generated, and the influences of the three factors on the accuracies of the three algorithms are systematically investigated. The results reveal that the above-mentioned three algorithms are complementary. In fact, the circle- and ellipse-fitting algorithms show low errors and are highly resistant to noise for water drops with small/medium volumes and contact angles, while for water drop with large volumes and contact angles just the ADSA-P algorithm can meet accuracy requirement. However, this algorithm introduces significant errors in the case of small volumes and contact angles because of its high sensitivity to noise. The critical water drop volumes of the circle- and ellipse-fitting algorithms corresponding to a certain contact angle error are obtained through a significant amount of computation. To improve the precision of the static contact angle measurement, a more accurate algorithm based on a combination of the three algorithms is proposed. Following a systematic investigation, the algorithm selection rule is described in detail, while maintaining the advantages of the three algorithms and overcoming their deficiencies. In general, static contact angles over the entire hydrophobicity range can be accurately evaluated using the proposed algorithm. The ease of erroneous judgment in static contact angle measurements is avoided. The proposed algorithm is validated by a static contact angle evaluation of real and numerically generated water drop
Efficient Algorithm for Rectangular Spiral Search
NASA Technical Reports Server (NTRS)
Brugarolas, Paul; Breckenridge, William
2008-01-01
An algorithm generates grid coordinates for a computationally efficient spiral search pattern covering an uncertain rectangular area spanned by a coordinate grid. The algorithm does not require that the grid be fixed; the algorithm can search indefinitely, expanding the grid and spiral, as needed, until the target of the search is found. The algorithm also does not require memory of coordinates of previous points on the spiral to generate the current point on the spiral.
Noise filtering algorithm for the MFTF-B computer based control system
Minor, E.G.
1983-11-30
An algorithm to reduce the message traffic in the MFTF-B computer based control system is described. The algorithm filters analog inputs to the control system. Its purpose is to distinguish between changes in the inputs due to noise and changes due to significant variations in the quantity being monitored. Noise is rejected while significant changes are reported to the control system data base, thus keeping the data base updated with a minimum number of messages. The algorithm is memory efficient, requiring only four bytes of storage per analog channel, and computationally simple, requiring only subtraction and comparison. Quantitative analysis of the algorithm is presented for the case of additive Gaussian noise. It is shown that the algorithm is stable and tends toward the mean value of the monitored variable over a wide variety of additive noise distributions.
The Superior Lambert Algorithm
NASA Astrophysics Data System (ADS)
der, G.
2011-09-01
Lambert algorithms are used extensively for initial orbit determination, mission planning, space debris correlation, and missile targeting, just to name a few applications. Due to the significance of the Lambert problem in Astrodynamics, Gauss, Battin, Godal, Lancaster, Gooding, Sun and many others (References 1 to 15) have provided numerous formulations leading to various analytic solutions and iterative methods. Most Lambert algorithms and their computer programs can only work within one revolution, break down or converge slowly when the transfer angle is near zero or 180 degrees, and their multi-revolution limitations are either ignored or barely addressed. Despite claims of robustness, many Lambert algorithms fail without notice, and the users seldom have a clue why. The DerAstrodynamics lambert2 algorithm, which is based on the analytic solution formulated by Sun, works for any number of revolutions and converges rapidly at any transfer angle. It provides significant capability enhancements over every other Lambert algorithm in use today. These include improved speed, accuracy, robustness, and multirevolution capabilities as well as implementation simplicity. Additionally, the lambert2 algorithm provides a powerful tool for solving the angles-only problem without artificial singularities (pointed out by Gooding in Reference 16), which involves 3 lines of sight captured by optical sensors, or systems such as the Air Force Space Surveillance System (AFSSS). The analytic solution is derived from the extended Godal’s time equation by Sun, while the iterative method of solution is that of Laguerre, modified for robustness. The Keplerian solution of a Lambert algorithm can be extended to include the non-Keplerian terms of the Vinti algorithm via a simple targeting technique (References 17 to 19). Accurate analytic non-Keplerian trajectories can be predicted for satellites and ballistic missiles, while performing at least 100 times faster in speed than most
NASA Astrophysics Data System (ADS)
Houchin, J. S.
2014-09-01
A common problem for the off-line validation of the calibration algorithms and algorithm coefficients is being able to run science data through the exact same software used for on-line calibration of that data. The Joint Polar Satellite System (JPSS) program solved part of this problem by making the Algorithm Development Library (ADL) available, which allows the operational algorithm code to be compiled and run on a desktop Linux workstation using flat file input and output. However, this solved only part of the problem, as the toolkit and methods to initiate the processing of data through the algorithms were geared specifically toward the algorithm developer, not the calibration analyst. In algorithm development mode, a limited number of sets of test data are staged for the algorithm once, and then run through the algorithm over and over as the software is developed and debugged. In calibration analyst mode, we are continually running new data sets through the algorithm, which requires significant effort to stage each of those data sets for the algorithm without additional tools. AeroADL solves this second problem by providing a set of scripts that wrap the ADL tools, providing both efficient means to stage and process an input data set, to override static calibration coefficient look-up-tables (LUT) with experimental versions of those tables, and to manage a library containing multiple versions of each of the static LUT files in such a way that the correct set of LUTs required for each algorithm are automatically provided to the algorithm without analyst effort. Using AeroADL, The Aerospace Corporation's analyst team has demonstrated the ability to quickly and efficiently perform analysis tasks for both the VIIRS and OMPS sensors with minimal training on the software tools.
Severson, Carl A; Pendharkar, Sachin R; Ronksley, Paul E; Tsai, Willis H
2015-01-01
OBJECTIVES: To assess the ability of electronic health data and existing screening tools to identify clinically significant obstructive sleep apnea (OSA), as defined by symptomatic or severe OSA. METHODS: The present retrospective cohort study of 1041 patients referred for sleep diagnostic testing was undertaken at a tertiary sleep centre in Calgary, Alberta. A diagnosis of clinically significant OSA or an alternative sleep diagnosis was assigned to each patient through blinded independent chart review by two sleep physicians. Predictive variables were identified from online questionnaire data, and diagnostic algorithms were developed. The performance of electronically derived algorithms for identifying patients with clinically significant OSA was determined. Diagnostic performance of these algorithms was compared with versions of the STOP-Bang questionnaire and adjusted neck circumference score (ANC) derived from electronic data. RESULTS: Electronic questionnaire data were highly sensitive (>95%) at identifying clinically significant OSA, but not specific. Sleep diagnostic testing-determined respiratory disturbance index was very specific (specificity ≥95%) for clinically relevant disease, but not sensitive (<35%). Derived algorithms had similar accuracy to the STOP-Bang or ANC, but required fewer questions and calculations. CONCLUSIONS: These data suggest that a two-step process using a small number of clinical variables (maximizing sensitivity) and objective diagnostic testing (maximizing specificity) is required to identify clinically significant OSA. When used in an online setting, simple algorithms can identify clinically relevant OSA with similar performance to existing decision rules such as the STOP-Bang or ANC. PMID:26083542
NASA Technical Reports Server (NTRS)
Barth, Timothy J.; Lomax, Harvard
1987-01-01
The past decade has seen considerable activity in algorithm development for the Navier-Stokes equations. This has resulted in a wide variety of useful new techniques. Some examples for the numerical solution of the Navier-Stokes equations are presented, divided into two parts. One is devoted to the incompressible Navier-Stokes equations, and the other to the compressible form.
Schulz, Andreas S.; Shmoys, David B.; Williamson, David P.
1997-01-01
Increasing global competition, rapidly changing markets, and greater consumer awareness have altered the way in which corporations do business. To become more efficient, many industries have sought to model some operational aspects by gigantic optimization problems. It is not atypical to encounter models that capture 106 separate “yes” or “no” decisions to be made. Although one could, in principle, try all 2106 possible solutions to find the optimal one, such a method would be impractically slow. Unfortunately, for most of these models, no algorithms are known that find optimal solutions with reasonable computation times. Typically, industry must rely on solutions of unguaranteed quality that are constructed in an ad hoc manner. Fortunately, for some of these models there are good approximation algorithms: algorithms that produce solutions quickly that are provably close to optimal. Over the past 6 years, there has been a sequence of major breakthroughs in our understanding of the design of approximation algorithms and of limits to obtaining such performance guarantees; this area has been one of the most flourishing areas of discrete mathematics and theoretical computer science. PMID:9370525
Che, Yanting; Wang, Qiuying; Gao, Wei; Yu, Fei
2015-10-05
In this paper, an improved inertial frame alignment algorithm for a marine SINS under mooring conditions is proposed, which significantly improves accuracy. Since the horizontal alignment is easy to complete, and a characteristic of gravity is that its component in the horizontal plane is zero, we use a clever method to improve the conventional inertial alignment algorithm. Firstly, a large misalignment angle model and a dimensionality reduction Gauss-Hermite filter are employed to establish the fine horizontal reference frame. Based on this, the projection of the gravity in the body inertial coordinate frame can be calculated easily. Then, the initial alignment algorithm is accomplished through an inertial frame alignment algorithm. The simulation and experiment results show that the improved initial alignment algorithm performs better than the conventional inertial alignment algorithm, and meets the accuracy requirements of a medium-accuracy marine SINS.
Higher-order force gradient symplectic algorithms
NASA Astrophysics Data System (ADS)
Chin, Siu A.; Kidwell, Donald W.
2000-12-01
We show that a recently discovered fourth order symplectic algorithm, which requires one evaluation of force gradient in addition to three evaluations of the force, when iterated to higher order, yielded algorithms that are far superior to similarly iterated higher order algorithms based on the standard Forest-Ruth algorithm. We gauge the accuracy of each algorithm by comparing the step-size independent error functions associated with energy conservation and the rotation of the Laplace-Runge-Lenz vector when solving a highly eccentric Kepler problem. For orders 6, 8, 10, and 12, the new algorithms are approximately a factor of 103, 104, 104, and 105 better.
Introductory Students, Conceptual Understanding, and Algorithmic Success.
ERIC Educational Resources Information Center
Pushkin, David B.
1998-01-01
Addresses the distinction between conceptual and algorithmic learning and the clarification of what is meant by a second-tier student. Explores why novice learners in chemistry and physics are able to apply algorithms without significant conceptual understanding. (DDR)
Irregular Applications: Architectures & Algorithms
Feo, John T.; Villa, Oreste; Tumeo, Antonino; Secchi, Simone
2012-02-06
Irregular applications are characterized by irregular data structures, control and communication patterns. Novel irregular high performance applications which deal with large data sets and require have recently appeared. Unfortunately, current high performance systems and software infrastructures executes irregular algorithms poorly. Only coordinated efforts by end user, area specialists and computer scientists that consider both the architecture and the software stack may be able to provide solutions to the challenges of modern irregular applications.
Basic cluster compression algorithm
NASA Technical Reports Server (NTRS)
Hilbert, E. E.; Lee, J.
1980-01-01
Feature extraction and data compression of LANDSAT data is accomplished by BCCA program which reduces costs associated with transmitting, storing, distributing, and interpreting multispectral image data. Algorithm uses spatially local clustering to extract features from image data to describe spectral characteristics of data set. Approach requires only simple repetitive computations, and parallel processing can be used for very high data rates. Program is written in FORTRAN IV for batch execution and has been implemented on SEL 32/55.
Diagnosis of monoclonal gammopathy of renal significance.
Bridoux, Frank; Leung, Nelson; Hutchison, Colin A; Touchard, Guy; Sethi, Sanjeev; Fermand, Jean-Paul; Picken, Maria M; Herrera, Guillermo A; Kastritis, Efstathios; Merlini, Giampaolo; Roussel, Murielle; Fervenza, Fernando C; Dispenzieri, Angela; Kyle, Robert A; Nasr, Samih H
2015-04-01
Monoclonal gammopathy of renal significance (MGRS) regroups all renal disorders caused by a monoclonal immunoglobulin (MIg) secreted by a nonmalignant B-cell clone. By definition, patients with MGRS do not meet the criteria for overt multiple myeloma/B-cell proliferation, and the hematologic disorder is generally consistent with monoclonal gammopathy of undetermined significance (MGUS). However, MGRS is associated with high morbidity due to the severity of renal and sometimes systemic lesions induced by the MIg. Early recognition is crucial, as suppression of MIg secretion by chemotherapy often improves outcomes. The spectrum of renal diseases in MGRS is wide, including old entities such as AL amyloidosis and newly described lesions, particularly proliferative glomerulonephritis with monoclonal Ig deposits and C3 glomerulopathy with monoclonal gammopathy. Kidney biopsy is indicated in most cases to determine the exact lesion associated with MGRS and evaluate its severity. Diagnosis requires integration of morphologic alterations by light microscopy, immunofluorescence (IF), electron microscopy, and in some cases by IF staining for Ig isotypes, immunoelectron microscopy, and proteomic analysis. Complete hematologic workup with serum and urine protein electrophoresis, immunofixation, and serum-free light-chain assay is required. This review addresses the pathologic and clinical features of MGRS lesions, indications of renal biopsy, and a proposed algorithm for the hematologic workup.
A new root-based direction-finding algorithm
NASA Astrophysics Data System (ADS)
Wasylkiwskyj, Wasyl; Kopriva, Ivica; DoroslovačKi, Miloš; Zaghloul, Amir I.
2007-04-01
Polynomial rooting direction-finding (DF) algorithms are a computationally efficient alternative to search-based DF algorithms and are particularly suitable for uniform linear arrays of physically identical elements provided that mutual interaction among the array elements can be either neglected or compensated for. A popular algorithm in such situations is Root Multiple Signal Classification (Root MUSIC (RM)), wherein the estimation of the directions of arrivals (DOA) requires the computation of the roots of a (2N - 2) -order polynomial, where N represents number of array elements. The DOA are estimated from the L pairs of roots closest to the unit circle, where L represents number of sources. In this paper we derive a modified root polynomial (MRP) algorithm requiring the calculation of only L roots in order to estimate the L DOA. We evaluate the performance of the MRP algorithm numerically and show that it is as accurate as the RM algorithm but with a significantly simpler algebraic structure. In order to demonstrate that the theoretically predicted performance can be achieved in an experimental setting, a decoupled array is emulated in hardware using phase shifters. The results are in excellent agreement with theory.
DNABIT Compress - Genome compression algorithm.
Rajarajeswari, Pothuraju; Apparao, Allam
2011-01-22
Data compression is concerned with how information is organized in data. Efficient storage means removal of redundancy from the data being stored in the DNA molecule. Data compression algorithms remove redundancy and are used to understand biologically important molecules. We present a compression algorithm, "DNABIT Compress" for DNA sequences based on a novel algorithm of assigning binary bits for smaller segments of DNA bases to compress both repetitive and non repetitive DNA sequence. Our proposed algorithm achieves the best compression ratio for DNA sequences for larger genome. Significantly better compression results show that "DNABIT Compress" algorithm is the best among the remaining compression algorithms. While achieving the best compression ratios for DNA sequences (Genomes),our new DNABIT Compress algorithm significantly improves the running time of all previous DNA compression programs. Assigning binary bits (Unique BIT CODE) for (Exact Repeats, Reverse Repeats) fragments of DNA sequence is also a unique concept introduced in this algorithm for the first time in DNA compression. This proposed new algorithm could achieve the best compression ratio as much as 1.58 bits/bases where the existing best methods could not achieve a ratio less than 1.72 bits/bases.
Temperature Corrected Bootstrap Algorithm
NASA Technical Reports Server (NTRS)
Comiso, Joey C.; Zwally, H. Jay
1997-01-01
A temperature corrected Bootstrap Algorithm has been developed using Nimbus-7 Scanning Multichannel Microwave Radiometer data in preparation to the upcoming AMSR instrument aboard ADEOS and EOS-PM. The procedure first calculates the effective surface emissivity using emissivities of ice and water at 6 GHz and a mixing formulation that utilizes ice concentrations derived using the current Bootstrap algorithm but using brightness temperatures from 6 GHz and 37 GHz channels. These effective emissivities are then used to calculate surface ice which in turn are used to convert the 18 GHz and 37 GHz brightness temperatures to emissivities. Ice concentrations are then derived using the same technique as with the Bootstrap algorithm but using emissivities instead of brightness temperatures. The results show significant improvement in the area where ice temperature is expected to vary considerably such as near the continental areas in the Antarctic, where the ice temperature is colder than average, and in marginal ice zones.
Improved LMS algorithm for adaptive beamforming
NASA Technical Reports Server (NTRS)
Godara, Lal C.
1990-01-01
Two adaptive algorithms which make use of all the available samples to estimate the required gradient are proposed and studied. The first algorithm is referred to as the recursive LMS (least mean squares) and is applicable to a general array. The second algorithm is referred to as the improved LMS algorithm and exploits the Toeplitz structure of the ACM (array correlation matrix); it can be used only for an equispaced linear array.
An Accelerated Recursive Doubling Algorithm for Block Tridiagonal Systems
Seal, Sudip K
2014-01-01
Block tridiagonal systems of linear equations arise in a wide variety of scientific and engineering applications. Recursive doubling algorithm is a well-known prefix computation-based numerical algorithm that requires O(M^3(N/P + log P)) work to compute the solution of a block tridiagonal system with N block rows and block size M on P processors. In real-world applications, solutions of tridiagonal systems are most often sought with multiple, often hundreds and thousands, of different right hand sides but with the same tridiagonal matrix. Here, we show that a recursive doubling algorithm is sub-optimal when computing solutions of block tridiagonal systems with multiple right hand sides and present a novel algorithm, called the accelerated recursive doubling algorithm, that delivers O(R) improvement when solving block tridiagonal systems with R distinct right hand sides. Since R is typically about 100 1000, this improvement translates to very significant speedups in practice. Detailed complexity analyses of the new algorithm with empirical confirmation of runtime improvements are presented. To the best of our knowledge, this algorithm has not been reported before in the literature.
An innovative localisation algorithm for railway vehicles
NASA Astrophysics Data System (ADS)
Allotta, B.; D'Adamio, P.; Malvezzi, M.; Pugi, L.; Ridolfi, A.; Rindi, A.; Vettori, G.
2014-11-01
In modern railway automatic train protection and automatic train control systems, odometry is a safety relevant on-board subsystem which estimates the instantaneous speed and the travelled distance of the train; a high reliability of the odometry estimate is fundamental, since an error on the train position may lead to a potentially dangerous overestimation of the distance available for braking. To improve the odometry estimate accuracy, data fusion of different inputs coming from a redundant sensor layout may be used. The aim of this work has been developing an innovative localisation algorithm for railway vehicles able to enhance the performances, in terms of speed and position estimation accuracy, of the classical odometry algorithms, such as the Italian Sistema Controllo Marcia Treno (SCMT). The proposed strategy consists of a sensor fusion between the information coming from a tachometer and an Inertial Measurements Unit (IMU). The sensor outputs have been simulated through a 3D multibody model of a railway vehicle. The work has provided the development of a custom IMU, designed by ECM S.p.a, in order to meet their industrial and business requirements. The industrial requirements have to be compliant with the European Train Control System (ETCS) standards: the European Rail Traffic Management System (ERTMS), a project developed by the European Union to improve the interoperability among different countries, in particular as regards the train control and command systems, fixes some standard values for the odometric (ODO) performance, in terms of speed and travelled distance estimation. The reliability of the ODO estimation has to be taken into account basing on the allowed speed profiles. The results of the currently used ODO algorithms can be improved, especially in case of degraded adhesion conditions; it has been verified in the simulation environment that the results of the proposed localisation algorithm are always compliant with the ERTMS requirements
Gouws, F.S.; Aldrich, C.
1996-11-01
By making use of machine learning techniques, the features of flotation froths and other plant variables can be used as a basis for the development of knowledge-based systems for plant monitoring and control. probabilistic induction and genetic algorithms were used to classify different froth structures from industrial copper and platinum flotation plants, as well as recoveries from a phosphate flotation plant. Both algorithms were equally capable of classifying the different froths at least as well as a human expert. The genetic algorithm performed significantly better than the inductive algorithm but required more tuning before optimum results could be obtained. The classification rules produced by both algorithms can easily be incorporated into a supervisory expert system shell or decision support system for plant operators and could consequently make a significant impact on the way flotation plants are currently being controlled.
Algorithm for reaction classification.
Kraut, Hans; Eiblmaier, Josef; Grethe, Guenter; Löw, Peter; Matuszczyk, Heinz; Saller, Heinz
2013-11-25
Reaction classification has important applications, and many approaches to classification have been applied. Our own algorithm tests all maximum common substructures (MCS) between all reactant and product molecules in order to find an atom mapping containing the minimum chemical distance (MCD). Recent publications have concluded that new MCS algorithms need to be compared with existing methods in a reproducible environment, preferably on a generalized test set, yet the number of test sets available is small, and they are not truly representative of the range of reactions that occur in real reaction databases. We have designed a challenging test set of reactions and are making it publicly available and usable with InfoChem's software or other classification algorithms. We supply a representative set of example reactions, grouped into different levels of difficulty, from a large number of reaction databases that chemists actually encounter in practice, in order to demonstrate the basic requirements for a mapping algorithm to detect the reaction centers in a consistent way. We invite the scientific community to contribute to the future extension and improvement of this data set, to achieve the goal of a common standard.
Programming the gradient projection algorithm
NASA Technical Reports Server (NTRS)
Hargrove, A.
1983-01-01
The gradient projection method of numerical optimization which is applied to problems having linear constraints but nonlinear objective functions is described and analyzed. The algorithm is found to be efficient and thorough for small systems, but requires the addition of auxiliary methods and programming for large scale systems with severe nonlinearities. In order to verify the theoretical results a digital computer is used to simulate the algorithm.
Using Strassen's algorithm to accelerate the solution of linear systems
NASA Technical Reports Server (NTRS)
Bailey, David H.; Lee, King; Simon, Horst D.
1990-01-01
Strassen's algorithm for fast matrix-matrix multiplication has been implemented for matrices of arbitrary shapes on the CRAY-2 and CRAY Y-MP supercomputers. Several techniques have been used to reduce the scratch space requirement for this algorithm while simultaneously preserving a high level of performance. When the resulting Strassen-based matrix multiply routine is combined with some routines from the new LAPACK library, LU decomposition can be performed with rates significantly higher than those achieved by conventional means. We succeeded in factoring a 2048 x 2048 matrix on the CRAY Y-MP at a rate equivalent to 325 MFLOPS.
Using DFX for Algorithm Evaluation
Beiriger, J.I.; Funkhouser, D.R.; Young, C.J.
1998-10-20
Evaluating whether or not a new seismic processing algorithm can improve the performance of the operational system can be problematic: it maybe difficult to isolate the comparable piece of the operational system it maybe necessary to duplicate ancillary timctions; and comparing results to the tuned, full-featured operational system maybe an unsat- isfactory basis on which to draw conclusions. Algorithm development and evaluation in an environment that more closely resembles the operational system can be achieved by integrating the algorithm with the custom user library of the Detection and Feature Extraction (DFX) code, developed by Science Applications kternational Corporation. This integration gives the seismic researcher access to all of the functionality of DFX, such as database access, waveform quality control, and station-specific tuning, and provides a more meaningfid basis for evaluation. The goal of this effort is to make the DFX environment more accessible to seismic researchers for algorithm evalua- tion. Typically, anew algorithm will be developed as a C-language progmm with an ASCII test parameter file. The integration process should allow the researcher to focus on the new algorithm developmen~ with minimum attention to integration issues. Customizing DFX, however, requires soflsvare engineering expertise, knowledge of the Scheme and C programming languages, and familiarity with the DFX source code. We use a C-language spatial coherence processing algorithm with a parameter and recipe file to develop a general process for integrating and evaluating a new algorithm in the DFX environment. To aid in configuring and managing the DFX environment, we develop a simple parameter management tool. We also identifi and examine capabilities that could simplify the process further, thus reducing the barriers facing researchers in using DFX..These capabilities include additional parameter manage- ment features, a Scheme-language template for algorithm testing, a
Algorithms on ensemble quantum computers.
Boykin, P Oscar; Mor, Tal; Roychowdhury, Vwani; Vatan, Farrokh
2010-06-01
In ensemble (or bulk) quantum computation, all computations are performed on an ensemble of computers rather than on a single computer. Measurements of qubits in an individual computer cannot be performed; instead, only expectation values (over the complete ensemble of computers) can be measured. As a result of this limitation on the model of computation, many algorithms cannot be processed directly on such computers, and must be modified, as the common strategy of delaying the measurements usually does not resolve this ensemble-measurement problem. Here we present several new strategies for resolving this problem. Based on these strategies we provide new versions of some of the most important quantum algorithms, versions that are suitable for implementing on ensemble quantum computers, e.g., on liquid NMR quantum computers. These algorithms are Shor's factorization algorithm, Grover's search algorithm (with several marked items), and an algorithm for quantum fault-tolerant computation. The first two algorithms are simply modified using a randomizing and a sorting strategies. For the last algorithm, we develop a classical-quantum hybrid strategy for removing measurements. We use it to present a novel quantum fault-tolerant scheme. More explicitly, we present schemes for fault-tolerant measurement-free implementation of Toffoli and σ(z)(¼) as these operations cannot be implemented "bitwise", and their standard fault-tolerant implementations require measurement.
Automatic Spike Removal Algorithm for Raman Spectra.
Tian, Yao; Burch, Kenneth S
2016-11-01
Raman spectroscopy is a powerful technique, widely used in both academia and industry. In part, the technique's extensive use stems from its ability to uniquely identify and image various material parameters: composition, strain, temperature, lattice/excitation symmetry, and magnetism in bulk, nano, solid, and organic materials. However, in nanomaterials and samples with low thermal conductivity, these measurements require long acquisition times. On the other hand, charge-coupled device (CCD) detectors used in Raman microscopes are vulnerable to cosmic rays. As a result, many spurious spikes occur in the measured spectra, which can distort the result or require the spectra to be ignored. In this paper, we outline a new method that significantly improves upon existing algorithms for removing these spikes. Specifically, we employ wavelet transform and data clustering in a new spike-removal algorithm. This algorithm results in spike-free spectra with negligible spectral distortion. The reduced dependence on the selection of wavelets and intuitive wavelet coefficient adjustment strategy enables non-experts to employ these powerful spectra-filtering techniques.
Statistically significant relational data mining :
Berry, Jonathan W.; Leung, Vitus Joseph; Phillips, Cynthia Ann; Pinar, Ali; Robinson, David Gerald; Berger-Wolf, Tanya; Bhowmick, Sanjukta; Casleton, Emily; Kaiser, Mark; Nordman, Daniel J.; Wilson, Alyson G.
2014-02-01
This report summarizes the work performed under the project (3z(BStatitically significant relational data mining.(3y (BThe goal of the project was to add more statistical rigor to the fairly ad hoc area of data mining on graphs. Our goal was to develop better algorithms and better ways to evaluate algorithm quality. We concetrated on algorithms for community detection, approximate pattern matching, and graph similarity measures. Approximate pattern matching involves finding an instance of a relatively small pattern, expressed with tolerance, in a large graph of data observed with uncertainty. This report gathers the abstracts and references for the eight refereed publications that have appeared as part of this work. We then archive three pieces of research that have not yet been published. The first is theoretical and experimental evidence that a popular statistical measure for comparison of community assignments favors over-resolved communities over approximations to a ground truth. The second are statistically motivated methods for measuring the quality of an approximate match of a small pattern in a large graph. The third is a new probabilistic random graph model. Statisticians favor these models for graph analysis. The new local structure graph model overcomes some of the issues with popular models such as exponential random graph models and latent variable models.
Algorithms versus architectures for computational chemistry
NASA Technical Reports Server (NTRS)
Partridge, H.; Bauschlicher, C. W., Jr.
1986-01-01
The algorithms employed are computationally intensive and, as a result, increased performance (both algorithmic and architectural) is required to improve accuracy and to treat larger molecular systems. Several benchmark quantum chemistry codes are examined on a variety of architectures. While these codes are only a small portion of a typical quantum chemistry library, they illustrate many of the computationally intensive kernels and data manipulation requirements of some applications. Furthermore, understanding the performance of the existing algorithm on present and proposed supercomputers serves as a guide for future programs and algorithm development. The algorithms investigated are: (1) a sparse symmetric matrix vector product; (2) a four index integral transformation; and (3) the calculation of diatomic two electron Slater integrals. The vectorization strategies are examined for these algorithms for both the Cyber 205 and Cray XMP. In addition, multiprocessor implementations of the algorithms are looked at on the Cray XMP and on the MIT static data flow machine proposed by DENNIS.
Fox, Christopher; Romeijn, H Edwin; Dempsey, James F
2006-05-01
We present work on combining three algorithms to improve ray-tracing efficiency in radiation therapy dose computation. The three algorithms include: An improved point-in-polygon algorithm, incremental voxel ray tracing algorithm, and stereographic projection of beamlets for voxel truncation. The point-in-polygon and incremental voxel ray-tracing algorithms have been used in computer graphics and nuclear medicine applications while the stereographic projection algorithm was developed by our group. These algorithms demonstrate significant improvements over the current standard algorithms in peer reviewed literature, i.e., the polygon and voxel ray-tracing algorithms of Siddon for voxel classification (point-in-polygon testing) and dose computation, respectively, and radius testing for voxel truncation. The presented polygon ray-tracing technique was tested on 10 intensity modulated radiation therapy (IMRT) treatment planning cases that required the classification of between 0.58 and 2.0 million voxels on a 2.5 mm isotropic dose grid into 1-4 targets and 5-14 structures represented as extruded polygons (a.k.a. Siddon prisms). Incremental voxel ray tracing and voxel truncation employing virtual stereographic projection was tested on the same IMRT treatment planning cases where voxel dose was required for 230-2400 beamlets using a finite-size pencil-beam algorithm. Between a 100 and 360 fold cpu time improvement over Siddon's method was observed for the polygon ray-tracing algorithm to perform classification of voxels for target and structure membership. Between a 2.6 and 3.1 fold reduction in cpu time over current algorithms was found for the implementation of incremental ray tracing. Additionally, voxel truncation via stereographic projection was observed to be 11-25 times faster than the radial-testing beamlet extent approach and was further improved 1.7-2.0 fold through point-classification using the method of translation over the cross product technique.
Tomasz Plawski, J. Hovater
2010-09-01
A digital low level radio frequency (RF) system typically incorporates either a heterodyne or direct sampling technique, followed by fast ADCs, then an FPGA, and finally a transmitting DAC. This universal platform opens up the possibilities for a variety of control algorithm implementations. The foremost concern for an RF control system is cavity field stability, and to meet the required quality of regulation, the chosen control system needs to have sufficient feedback gain. In this paper we will investigate the effectiveness of the regulation for three basic control system algorithms: I&Q (In-phase and Quadrature), Amplitude & Phase and digital SEL (Self Exciting Loop) along with the example of the Jefferson Lab 12 GeV cavity field control system.
Efficient demultiplexing algorithm for noncontiguous carriers
NASA Technical Reports Server (NTRS)
Thanawala, A. A.; Kwatra, S. C.; Jamali, M. M.; Budinger, J.
1992-01-01
A channel separation algorithm for the frequency division multiple access/time division multiplexing (FDMA/TDM) scheme is presented. It is shown that implementation using this algorithm can be more effective than the fast Fourier transform (FFT) algorithm when only a small number of carriers need to be selected from many, such as satellite Earth terminals. The algorithm is based on polyphase filtering followed by application of a generalized Walsh-Hadamard transform (GWHT). Comparison of the transform technique used in this algorithm with discrete Fourier transform (DFT) and FFT is given. Estimates of the computational rates and power requirements to implement this system are also given.
A generalized memory test algorithm
NASA Technical Reports Server (NTRS)
Milner, E. J.
1982-01-01
A general algorithm for testing digital computer memory is presented. The test checks that (1) every bit can be cleared and set in each memory work, and (2) bits are not erroneously cleared and/or set elsewhere in memory at the same time. The algorithm can be applied to any size memory block and any size memory word. It is concise and efficient, requiring the very few cycles through memory. For example, a test of 16-bit-word-size memory requries only 384 cycles through memory. Approximately 15 seconds were required to test a 32K block of such memory, using a microcomputer having a cycle time of 133 nanoseconds.
NASA Astrophysics Data System (ADS)
Southall, Hugh L.; O'Donnell, Teresa H.; Derov, John S.
2010-04-01
EGO is an evolutionary, data-adaptive algorithm which can be useful for optimization problems with expensive cost functions. Many antenna design problems qualify since complex computational electromagnetics (CEM) simulations can take significant resources. This makes evolutionary algorithms such as genetic algorithms (GA) or particle swarm optimization (PSO) problematic since iterations of large populations are required. In this paper we discuss multiparameter optimization of a wideband, single-element antenna over a metamaterial ground plane and the interfacing of EGO (optimization) with a full-wave CEM simulation (cost function evaluation).
NASA Astrophysics Data System (ADS)
Lambrakos, S. G.; Boris, J. P.; Oran, E. S.; Chandrasekhar, I.; Nagumo, M.
1989-12-01
We present a new modification of the SHAKE algorithm, MSHAKE, that maintains fixed distances in molecular dynamics simulations of polyatomic molecules. The MSHAKE algorithm, which is applied by modifying the leapfrog algorithm to include forces of constraint, computes an initial estimate of constraint forces, then iteratively corrects the constraint forces required to maintain the fixed distances. Thus MSHAKE should always converge more rapidly than SHAKE. Further, the explicit determination of the constraint forces at each timestep makes MSHAKE convenient for use in molecular dynamics simulations where bond stress is a significant dynamical quantity.
Fontana, W.
1990-12-13
In this paper complex adaptive systems are defined by a self- referential loop in which objects encode functions that act back on these objects. A model for this loop is presented. It uses a simple recursive formal language, derived from the lambda-calculus, to provide a semantics that maps character strings into functions that manipulate symbols on strings. The interaction between two functions, or algorithms, is defined naturally within the language through function composition, and results in the production of a new function. An iterated map acting on sets of functions and a corresponding graph representation are defined. Their properties are useful to discuss the behavior of a fixed size ensemble of randomly interacting functions. This function gas'', or Turning gas'', is studied under various conditions, and evolves cooperative interaction patterns of considerable intricacy. These patterns adapt under the influence of perturbations consisting in the addition of new random functions to the system. Different organizations emerge depending on the availability of self-replicators.
Dey, Swati; North, Justin A; Sriram, Jaya; Evans, Bradley S; Tabita, F Robert
2015-12-25
All organisms possess fundamental metabolic pathways to ensure that needed carbon and sulfur compounds are provided to the cell in the proper chemical form and oxidation state. For most organisms capable of using CO2 as sole source of carbon, ribulose-1,5-bisphosphate (RuBP) carboxylase/oxygenase (Rubisco) catalyzes primary carbon dioxide assimilation. In addition, sulfur salvage pathways are necessary to ensure that key sulfur-containing compounds are both available and, where necessary, detoxified in the cell. Using knock-out mutations and metabolomics in the bacterium Rhodospirillum rubrum, we show here that Rubisco concurrently catalyzes key and essential reactions for seemingly unrelated but physiologically essential central carbon and sulfur salvage metabolic pathways of the cell. In this study, complementation and mutagenesis studies indicated that representatives of all known extant functional Rubisco forms found in nature are capable of simultaneously catalyzing reactions required for both CO2-dependent growth as well as growth using 5-methylthioadenosine as sole sulfur source under anaerobic photosynthetic conditions. Moreover, specific inactivation of the CO2 fixation reaction did not affect the ability of Rubisco to support anaerobic 5-methylthioadenosine metabolism, suggesting that the active site of Rubisco has evolved to ensure that this enzyme maintains both key functions. Thus, despite the coevolution of both functions, the active site of this protein may be differentially modified to affect only one of its key functions.
Dey, Swati; North, Justin A.; Sriram, Jaya; Evans, Bradley S.; Tabita, F. Robert
2015-01-01
All organisms possess fundamental metabolic pathways to ensure that needed carbon and sulfur compounds are provided to the cell in the proper chemical form and oxidation state. For most organisms capable of using CO2 as sole source of carbon, ribulose-1,5-bisphosphate (RuBP) carboxylase/oxygenase (Rubisco) catalyzes primary carbon dioxide assimilation. In addition, sulfur salvage pathways are necessary to ensure that key sulfur-containing compounds are both available and, where necessary, detoxified in the cell. Using knock-out mutations and metabolomics in the bacterium Rhodospirillum rubrum, we show here that Rubisco concurrently catalyzes key and essential reactions for seemingly unrelated but physiologically essential central carbon and sulfur salvage metabolic pathways of the cell. In this study, complementation and mutagenesis studies indicated that representatives of all known extant functional Rubisco forms found in nature are capable of simultaneously catalyzing reactions required for both CO2-dependent growth as well as growth using 5-methylthioadenosine as sole sulfur source under anaerobic photosynthetic conditions. Moreover, specific inactivation of the CO2 fixation reaction did not affect the ability of Rubisco to support anaerobic 5-methylthioadenosine metabolism, suggesting that the active site of Rubisco has evolved to ensure that this enzyme maintains both key functions. Thus, despite the coevolution of both functions, the active site of this protein may be differentially modified to affect only one of its key functions. PMID:26511314
Benchmarking monthly homogenization algorithms
NASA Astrophysics Data System (ADS)
Venema, V. K. C.; Mestre, O.; Aguilar, E.; Auer, I.; Guijarro, J. A.; Domonkos, P.; Vertacnik, G.; Szentimrey, T.; Stepanek, P.; Zahradnicek, P.; Viarre, J.; Müller-Westermeier, G.; Lakatos, M.; Williams, C. N.; Menne, M.; Lindau, R.; Rasol, D.; Rustemeier, E.; Kolokythas, K.; Marinova, T.; Andresen, L.; Acquaotta, F.; Fratianni, S.; Cheval, S.; Klancar, M.; Brunetti, M.; Gruber, C.; Prohom Duran, M.; Likso, T.; Esteban, P.; Brandsma, T.
2011-08-01
The COST (European Cooperation in Science and Technology) Action ES0601: Advances in homogenization methods of climate series: an integrated approach (HOME) has executed a blind intercomparison and validation study for monthly homogenization algorithms. Time series of monthly temperature and precipitation were evaluated because of their importance for climate studies and because they represent two important types of statistics (additive and multiplicative). The algorithms were validated against a realistic benchmark dataset. The benchmark contains real inhomogeneous data as well as simulated data with inserted inhomogeneities. Random break-type inhomogeneities were added to the simulated datasets modeled as a Poisson process with normally distributed breakpoint sizes. To approximate real world conditions, breaks were introduced that occur simultaneously in multiple station series within a simulated network of station data. The simulated time series also contained outliers, missing data periods and local station trends. Further, a stochastic nonlinear global (network-wide) trend was added. Participants provided 25 separate homogenized contributions as part of the blind study as well as 22 additional solutions submitted after the details of the imposed inhomogeneities were revealed. These homogenized datasets were assessed by a number of performance metrics including (i) the centered root mean square error relative to the true homogeneous value at various averaging scales, (ii) the error in linear trend estimates and (iii) traditional contingency skill scores. The metrics were computed both using the individual station series as well as the network average regional series. The performance of the contributions depends significantly on the error metric considered. Contingency scores by themselves are not very informative. Although relative homogenization algorithms typically improve the homogeneity of temperature data, only the best ones improve precipitation data
A novel algorithm for notch detection
NASA Astrophysics Data System (ADS)
Acosta, C.; Salazar, D.; Morales, D.
2013-06-01
It is common knowledge that DFM guidelines require revisions to design data. These guidelines impose the need for corrections inserted into areas within the design data flow. At times, this requires rather drastic modifications to the data, both during the layer derivation or DRC phase, and especially within the RET phase. For example, OPC. During such data transformations, several polygon geometry changes are introduced, which can substantially increase shot count, geometry complexity, and eventually conversion to mask writer machine formats. In this resulting complex data, it may happen that notches are found that do not significantly contribute to the final manufacturing results, but do in fact contribute to the complexity of the surrounding geometry, and are therefore undesirable. Additionally, there are cases in which the overall figure count can be reduced with minimum impact in the quality of the corrected data, if notches are detected and corrected. Case in point, there are other cases where data quality could be improved if specific valley notches are filled in, or peak notches are cut out. Such cases generally satisfy specific geometrical restrictions in order to be valid candidates for notch correction. Traditional notch detection has been done for rectilinear data (Manhattan-style) and only in axis-parallel directions. The traditional approaches employ dimensional measurement algorithms that measure edge distances along the outside of polygons. These approaches are in general adaptations, and therefore ill-fitted for generalized detection of notches with strange shapes and in strange rotations. This paper covers a novel algorithm developed for the CATS MRCC tool that finds both valley and/or peak notches that are candidates for removal. The algorithm is generalized and invariant to data rotation, so that it can find notches in data rotated in any angle. It includes parameters to control the dimensions of detected notches, as well as algorithm tolerances
Eddy-current NDE inverse problem with sparse grid algorithm
NASA Astrophysics Data System (ADS)
Zhou, Liming; Sabbagh, Harold A.; Sabbagh, Elias H.; Murphy, R. Kim; Bernacchi, William; Aldrin, John C.; Forsyth, David; Lindgren, Eric
2016-02-01
In model-based inverse problems, the unknown parameters (such as length, width, depth) need to be estimated. When the unknown parameters are few, the conventional mathematical methods are suitable. But the increasing number of unknown parameters will make the computation become heavy. To reduce the burden of computation, the sparse grid algorithm was used in our work. As a result, we obtain a powerful interpolation method that requires significantly fewer support nodes than conventional interpolation on a full grid.
Computational and performance aspects of PCA-based face-recognition algorithms.
Moon, H; Phillips, P J
2001-01-01
Algorithms based on principal component analysis (PCA) form the basis of numerous studies in the psychological and algorithmic face-recognition literature. PCA is a statistical technique and its incorporation into a face-recognition algorithm requires numerous design decisions. We explicitly state the design decisions by introducing a generic modular PCA-algorithm. This allows us to investigate these decisions, including those not documented in the literature. We experimented with different implementations of each module, and evaluated the different implementations using the September 1996 FERET evaluation protocol (the de facto standard for evaluating face-recognition algorithms). We experimented with (i) changing the illumination normalization procedure; (ii) studying effects on algorithm performance of compressing images with JPEG and wavelet compression algorithms; (iii) varying the number of eigenvectors in the representation; and (iv) changing the similarity measure in the classification process. We performed two experiments. In the first experiment, we obtained performance results on the standard September 1996 FERET large-gallery image sets. In the second experiment, we examined the variability in algorithm performance on different sets of facial images. The study was performed on 100 randomly generated image sets (galleries) of the same size. Our two most significant results are (i) changing the similarity measure produced the greatest change in performance, and (ii) that difference in performance of +/- 10% is needed to distinguish between algorithms.
ALGORITHM FOR SORTING GROUPED DATA
NASA Technical Reports Server (NTRS)
Evans, J. D.
1994-01-01
It is often desirable to sort data sets in ascending or descending order. This becomes more difficult for grouped data, i.e., multiple sets of data, where each set of data involves several measurements or related elements. The sort becomes increasingly cumbersome when more than a few elements exist for each data set. In order to achieve an efficient sorting process, an algorithm has been devised in which the maximum most significant element is found, and then compared to each element in succession. The program was written to handle the daily temperature readings of the Voyager spacecraft, particularly those related to the special tracking requirements of Voyager 2. By reducing each data set to a single representative number, the sorting process becomes very easy. The first step in the process is to reduce the data set of width 'n' to a data set of width '1'. This is done by representing each data set by a polynomial of length 'n' based on the differences of the maximum and minimum elements. These single numbers are then sorted and converted back to obtain the original data sets. Required input data are the name of the data file to read and sort, and the starting and ending record numbers. The package includes a sample data file, containing 500 sets of data with 5 elements in each set. This program will perform a sort of the 500 data sets in 3 - 5 seconds on an IBM PC-AT with a hard disk; on a similarly equipped IBM PC-XT the time is under 10 seconds. This program is written in BASIC (specifically the Microsoft QuickBasic compiler) for interactive execution and has been implemented on the IBM PC computer series operating under PC-DOS with a central memory requirement of approximately 40K of 8 bit bytes. A hard disk is desirable for speed considerations, but is not required. This program was developed in 1986.
A fast DFT algorithm using complex integer transforms
NASA Technical Reports Server (NTRS)
Reed, I. S.; Truong, T. K.
1978-01-01
Winograd's algorithm for computing the discrete Fourier transform is extended considerably for certain large transform lengths. This is accomplished by performing the cyclic convolution, required by Winograd's method, by a fast transform over certain complex integer fields. This algorithm requires fewer multiplications than either the standard fast Fourier transform or Winograd's more conventional algorithms.
Genetic algorithms as discovery programs
Hilliard, M.R.; Liepins, G.
1986-01-01
Genetic algorithms are mathematical counterparts to natural selection and gene recombination. As such, they have provided one of the few significant breakthroughs in machine learning. Used with appropriate reward functions and apportionment of credit, they have been successfully applied to gas pipeline operation, x-ray registration and mathematical optimization problems. This paper discusses the basics of genetic algorithms, describes a few successes, and reports on current progress at Oak Ridge National Laboratory in applications to set covering and simulated robots.
Heinstein, M.W.
1997-10-01
A contact enforcement algorithm has been developed for matrix-free quasistatic finite element techniques. Matrix-free (iterative) solution algorithms such as nonlinear Conjugate Gradients (CG) and Dynamic Relaxation (DR) are distinctive in that the number of iterations required for convergence is typically of the same order as the number of degrees of freedom of the model. From iteration to iteration the contact normal and tangential forces vary significantly making contact constraint satisfaction tenuous. Furthermore, global determination and enforcement of the contact constraints every iteration could be questioned on the grounds of efficiency. This work addresses this situation by introducing an intermediate iteration for treating the active gap constraint and at the same time exactly (kinematically) enforcing the linearized gap rate constraint for both frictionless and frictional response.
Fast algorithm for computing complex number-theoretic transforms
NASA Technical Reports Server (NTRS)
Reed, I. S.; Liu, K. Y.; Truong, T. K.
1977-01-01
A high-radix FFT algorithm for computing transforms over FFT, where q is a Mersenne prime, is developed to implement fast circular convolutions. This new algorithm requires substantially fewer multiplications than the conventional FFT.
Algorithm Animation with Galant.
Stallmann, Matthias F
2017-01-01
Although surveys suggest positive student attitudes toward the use of algorithm animations, it is not clear that they improve learning outcomes. The Graph Algorithm Animation Tool, or Galant, challenges and motivates students to engage more deeply with algorithm concepts, without distracting them with programming language details or GUIs. Even though Galant is specifically designed for graph algorithms, it has also been used to animate other algorithms, most notably sorting algorithms.
Listless zerotree image compression algorithm
NASA Astrophysics Data System (ADS)
Lian, Jing; Wang, Ke
2006-09-01
In this paper, an improved zerotree structure and a new coding procedure are adopted, which improve the reconstructed image qualities. Moreover, the lists in SPIHT are replaced by flag maps, and lifting scheme is adopted to realize wavelet transform, which lowers the memory requirements and speeds up the coding process. Experimental results show that the algorithm is more effective and efficient compared with SPIHT.
Super-resolution reconstruction algorithm based on adaptive convolution kernel size selection
NASA Astrophysics Data System (ADS)
Gao, Hang; Chen, Qian; Sui, Xiubao; Zeng, Junjie; Zhao, Yao
2016-09-01
Restricted by the detector technology and optical diffraction limit, the spatial resolution of infrared imaging system is difficult to achieve significant improvement. Super-Resolution (SR) reconstruction algorithm is an effective way to solve this problem. Among them, the SR algorithm based on multichannel blind deconvolution (MBD) estimates the convolution kernel only by low resolution observation images, according to the appropriate regularization constraints introduced by a priori assumption, to realize the high resolution image restoration. The algorithm has been shown effective when each channel is prime. In this paper, we use the significant edges to estimate the convolution kernel and introduce an adaptive convolution kernel size selection mechanism, according to the uncertainty of the convolution kernel size in MBD processing. To reduce the interference of noise, we amend the convolution kernel in an iterative process, and finally restore a clear image. Experimental results show that the algorithm can meet the convergence requirement of the convolution kernel estimation.
The Structure and Evolution of LOCBURST: The BATSE Burst Location Algorithm
NASA Technical Reports Server (NTRS)
Pendleton, Geoffrey N.; Briggs, Michael S.; Kippen, R. Marc; Paciesas, William S.; Stollberg, Mark; Woods, Pete; Meegan, Charles A.; Fishman, Gerald J.; McCollough, Mike L.; Connaughton, Valerie
1999-01-01
The gamma-ray burst (GRB) location algorithm used to produce the BATSE GRB locations is described. The general flow of control of the current location algorithm is presented, and the significant properties of the various physical inputs required are identified. The development of the burst location algorithm during the releases of the BATSE IB, 2B, and 3B GRB catalogs is presented so that the reasons for the differences in the positions and error estimates between the catalogs can be understood. In particular, differences between the 2B and 3B locations are discussed for events that have moved significantly and the reasons for the changes explained. The locations of bursts located independently by the interplanetary network (IPN) are used to illustrate the effect on burst location accuracy of various components of the algorithm. IPN data and locations from other gamma-ray instruments are used to calculate estimates of the systematic errors on BATSE burst locations.
Large scale tracking algorithms
Hansen, Ross L.; Love, Joshua Alan; Melgaard, David Kennett; Karelitz, David B.; Pitts, Todd Alan; Zollweg, Joshua David; Anderson, Dylan Z.; Nandy, Prabal; Whitlow, Gary L.; Bender, Daniel A.; Byrne, Raymond Harry
2015-01-01
Low signal-to-noise data processing algorithms for improved detection, tracking, discrimination and situational threat assessment are a key research challenge. As sensor technologies progress, the number of pixels will increase signi cantly. This will result in increased resolution, which could improve object discrimination, but unfortunately, will also result in a significant increase in the number of potential targets to track. Many tracking techniques, like multi-hypothesis trackers, suffer from a combinatorial explosion as the number of potential targets increase. As the resolution increases, the phenomenology applied towards detection algorithms also changes. For low resolution sensors, "blob" tracking is the norm. For higher resolution data, additional information may be employed in the detection and classfication steps. The most challenging scenarios are those where the targets cannot be fully resolved, yet must be tracked and distinguished for neighboring closely spaced objects. Tracking vehicles in an urban environment is an example of such a challenging scenario. This report evaluates several potential tracking algorithms for large-scale tracking in an urban environment.
A quantum Algorithm for the Moebius Function
NASA Astrophysics Data System (ADS)
Love, Peter
We give an efficient quantum algorithm for the Moebius function from the natural numbers to -1,0,1. The cost of the algorithm is asymptotically quadratic in log n and does not require the computation of the prime factorization of n as an intermediate step.
New pole placement algorithm - Polynomial matrix approach
NASA Technical Reports Server (NTRS)
Shafai, B.; Keel, L. H.
1990-01-01
A simple and direct pole-placement algorithm is introduced for dynamical systems having a block companion matrix A. The algorithm utilizes well-established properties of matrix polynomials. Pole placement is achieved by appropriately assigning coefficient matrices of the corresponding matrix polynomial. This involves only matrix additions and multiplications without requiring matrix inversion. A numerical example is given for the purpose of illustration.
Efficient Learning Algorithms with Limited Information
ERIC Educational Resources Information Center
De, Anindya
2013-01-01
The thesis explores efficient learning algorithms in settings which are more restrictive than the PAC model of learning (Valiant) in one of the following two senses: (i) The learning algorithm has a very weak access to the unknown function, as in, it does not get labeled samples for the unknown function (ii) The error guarantee required from the…
Ocean observations with EOS/MODIS: Algorithm Development and Post Launch Studies
NASA Technical Reports Server (NTRS)
Gordon, Howard R.
1998-01-01
Significant accomplishments made during the present reporting period: (1) We expanded our "spectral-matching" algorithm (SMA), for identifying the presence of absorbing aerosols and simultaneously performing atmospheric correction and derivation of the ocean's bio-optical parameters, to the point where it could be added as a subroutine to the MODIS water-leaving radiance algorithm; (2) A modification to the SMA that does not require detailed aerosol models has been developed. This is important as the requirement for realistic aerosol models has been a weakness of the SMA; and (3) We successfully acquired micro pulse lidar data in a Saharan dust outbreak during ACE-2 in the Canary Islands.
Parallel algorithm development
Adams, T.F.
1996-06-01
Rapid changes in parallel computing technology are causing significant changes in the strategies being used for parallel algorithm development. One approach is simply to write computer code in a standard language like FORTRAN 77 or with the expectation that the compiler will produce executable code that will run in parallel. The alternatives are: (1) to build explicit message passing directly into the source code; or (2) to write source code without explicit reference to message passing or parallelism, but use a general communications library to provide efficient parallel execution. Application of these strategies is illustrated with examples of codes currently under development.
A fast algorithm for sparse matrix computations related to inversion
Li, S.; Wu, W.; Darve, E.
2013-06-01
We have developed a fast algorithm for computing certain entries of the inverse of a sparse matrix. Such computations are critical to many applications, such as the calculation of non-equilibrium Green’s functions G{sup r} and G{sup <} for nano-devices. The FIND (Fast Inverse using Nested Dissection) algorithm is optimal in the big-O sense. However, in practice, FIND suffers from two problems due to the width-2 separators used by its partitioning scheme. One problem is the presence of a large constant factor in the computational cost of FIND. The other problem is that the partitioning scheme used by FIND is incompatible with most existing partitioning methods and libraries for nested dissection, which all use width-1 separators. Our new algorithm resolves these problems by thoroughly decomposing the computation process such that width-1 separators can be used, resulting in a significant speedup over FIND for realistic devices — up to twelve-fold in simulation. The new algorithm also has the added advantage that desired off-diagonal entries can be computed for free. Consequently, our algorithm is faster than the current state-of-the-art recursive methods for meshes of any size. Furthermore, the framework used in the analysis of our algorithm is the first attempt to explicitly apply the widely-used relationship between mesh nodes and matrix computations to the problem of multiple eliminations with reuse of intermediate results. This framework makes our algorithm easier to generalize, and also easier to compare against other methods related to elimination trees. Finally, our accuracy analysis shows that the algorithms that require back-substitution are subject to significant extra round-off errors, which become extremely large even for some well-conditioned matrices or matrices with only moderately large condition numbers. When compared to these back-substitution algorithms, our algorithm is generally a few orders of magnitude more accurate, and our produced round
Unsupervised Cryo-EM Data Clustering through Adaptively Constrained K-Means Algorithm
Xu, Yaofang; Wu, Jiayi; Yin, Chang-Cheng; Mao, Youdong
2016-01-01
In single-particle cryo-electron microscopy (cryo-EM), K-means clustering algorithm is widely used in unsupervised 2D classification of projection images of biological macromolecules. 3D ab initio reconstruction requires accurate unsupervised classification in order to separate molecular projections of distinct orientations. Due to background noise in single-particle images and uncertainty of molecular orientations, traditional K-means clustering algorithm may classify images into wrong classes and produce classes with a large variation in membership. Overcoming these limitations requires further development on clustering algorithms for cryo-EM data analysis. We propose a novel unsupervised data clustering method building upon the traditional K-means algorithm. By introducing an adaptive constraint term in the objective function, our algorithm not only avoids a large variation in class sizes but also produces more accurate data clustering. Applications of this approach to both simulated and experimental cryo-EM data demonstrate that our algorithm is a significantly improved alterative to the traditional K-means algorithm in single-particle cryo-EM analysis. PMID:27959895
Unsupervised Cryo-EM Data Clustering through Adaptively Constrained K-Means Algorithm.
Xu, Yaofang; Wu, Jiayi; Yin, Chang-Cheng; Mao, Youdong
2016-01-01
In single-particle cryo-electron microscopy (cryo-EM), K-means clustering algorithm is widely used in unsupervised 2D classification of projection images of biological macromolecules. 3D ab initio reconstruction requires accurate unsupervised classification in order to separate molecular projections of distinct orientations. Due to background noise in single-particle images and uncertainty of molecular orientations, traditional K-means clustering algorithm may classify images into wrong classes and produce classes with a large variation in membership. Overcoming these limitations requires further development on clustering algorithms for cryo-EM data analysis. We propose a novel unsupervised data clustering method building upon the traditional K-means algorithm. By introducing an adaptive constraint term in the objective function, our algorithm not only avoids a large variation in class sizes but also produces more accurate data clustering. Applications of this approach to both simulated and experimental cryo-EM data demonstrate that our algorithm is a significantly improved alterative to the traditional K-means algorithm in single-particle cryo-EM analysis.
Relating Business Goals to Architecturally Significant Requirements for Software Systems
2010-05-01
Pittsburgh and in Amsterdam, which gave us forums for presenting our ideas and receiving useful feedback. We especially thank Eltjo Poort of Logica who...overview of business models and their use [Chesbrough 2007]. Seddon and Lewis provide a similarly helpful overview by way of distinguishing the concept...Management 9, 2: 77-81 1991. [Mitchell 2003] Mitchell, Donald W. & Coles, Carol Bruckner. ―Building Better Business Models.‖ Leader to Leader (Summer 2003
A simple suboptimal least-squares algorithm for attitude determination with multiple sensors
NASA Technical Reports Server (NTRS)
Brozenec, Thomas F.; Bender, Douglas J.
1994-01-01
faster than all but a similarly specialized version of the QUEST algorithm. We also introduce a novel measurement averaging technique which reduces the n-measurement case to the two measurement case for our particular application, a star tracker and earth sensor mounted on an earth-pointed geosynchronous communications satellite. Using this technique, many n-measurement problems reduce to less than or equal to 3 measurements; this reduces the amount of required calculation without significant degradation in accuracy. Finally, we present the results of some tests which compare the least-squares algorithm with the QUEST and FOAM algorithms in the two-measurement case. For our example case, all three algorithms performed with similar accuracy.
Fast Outlier Detection Using a Grid-Based Algorithm.
Lee, Jihwan; Cho, Nam-Wook
2016-01-01
As one of data mining techniques, outlier detection aims to discover outlying observations that deviate substantially from the reminder of the data. Recently, the Local Outlier Factor (LOF) algorithm has been successfully applied to outlier detection. However, due to the computational complexity of the LOF algorithm, its application to large data with high dimension has been limited. The aim of this paper is to propose grid-based algorithm that reduces the computation time required by the LOF algorithm to determine the k-nearest neighbors. The algorithm divides the data spaces in to a smaller number of regions, called as a "grid", and calculates the LOF value of each grid. To examine the effectiveness of the proposed method, several experiments incorporating different parameters were conducted. The proposed method demonstrated a significant computation time reduction with predictable and acceptable trade-off errors. Then, the proposed methodology was successfully applied to real database transaction logs of Korea Atomic Energy Research Institute. As a result, we show that for a very large dataset, the grid-LOF can be considered as an acceptable approximation for the original LOF. Moreover, it can also be effectively used for real-time outlier detection.
Block-Based Connected-Component Labeling Algorithm Using Binary Decision Trees
Chang, Wan-Yu; Chiu, Chung-Cheng; Yang, Jia-Horng
2015-01-01
In this paper, we propose a fast labeling algorithm based on block-based concepts. Because the number of memory access points directly affects the time consumption of the labeling algorithms, the aim of the proposed algorithm is to minimize neighborhood operations. Our algorithm utilizes a block-based view and correlates a raster scan to select the necessary pixels generated by a block-based scan mask. We analyze the advantages of a sequential raster scan for the block-based scan mask, and integrate the block-connected relationships using two different procedures with binary decision trees to reduce unnecessary memory access. This greatly simplifies the pixel locations of the block-based scan mask. Furthermore, our algorithm significantly reduces the number of leaf nodes and depth levels required in the binary decision tree. We analyze the labeling performance of the proposed algorithm alongside that of other labeling algorithms using high-resolution images and foreground images. The experimental results from synthetic and real image datasets demonstrate that the proposed algorithm is faster than other methods. PMID:26393597
Block-Based Connected-Component Labeling Algorithm Using Binary Decision Trees.
Chang, Wan-Yu; Chiu, Chung-Cheng; Yang, Jia-Horng
2015-09-18
In this paper, we propose a fast labeling algorithm based on block-based concepts. Because the number of memory access points directly affects the time consumption of the labeling algorithms, the aim of the proposed algorithm is to minimize neighborhood operations. Our algorithm utilizes a block-based view and correlates a raster scan to select the necessary pixels generated by a block-based scan mask. We analyze the advantages of a sequential raster scan for the block-based scan mask, and integrate the block-connected relationships using two different procedures with binary decision trees to reduce unnecessary memory access. This greatly simplifies the pixel locations of the block-based scan mask. Furthermore, our algorithm significantly reduces the number of leaf nodes and depth levels required in the binary decision tree. We analyze the labeling performance of the proposed algorithm alongside that of other labeling algorithms using high-resolution images and foreground images. The experimental results from synthetic and real image datasets demonstrate that the proposed algorithm is faster than other methods.
Matott, L Shawn; Bartelt-Hunt, Shannon L; Rabideau, Alan J; Fowler, K R
2006-10-15
Although heuristic optimization techniques are increasingly applied in environmental engineering applications, algorithm selection and configuration are often approached in an ad hoc fashion. In this study, the design of a multilayer sorptive barrier system served as a benchmark problem for evaluating several algorithm-tuning procedures, as applied to three global optimization techniques (genetic algorithms, simulated annealing, and particle swarm optimization). Each design problem was configured as a combinatorial optimization in which sorptive materials were selected for inclusion in a landfill liner to minimize the transport of three common organic contaminants. Relative to multilayer sorptive barrier design, study results indicate (i) the binary-coded genetic algorithm is highly efficient and requires minimal tuning, (ii) constraint violations must be carefully integrated to avoid poor algorithm convergence, and (iii) search algorithm performance is strongly influenced by the physical-chemical properties of the organic contaminants of concern. More generally, the results suggest that formal algorithm tuning, which has not been widely applied to environmental engineering optimization, can significantly improve algorithm performance and provide insight into the physical processes that control environmental systems.
A simple greedy algorithm for reconstructing pedigrees.
Cowell, Robert G
2013-02-01
This paper introduces a simple greedy algorithm for searching for high likelihood pedigrees using micro-satellite (STR) genotype information on a complete sample of related individuals. The core idea behind the algorithm is not new, but it is believed that putting it into a greedy search setting, and specifically the application to pedigree learning, is novel. The algorithm does not require age or sex information, but this information can be incorporated if desired. The algorithm is applied to human and non-human genetic data and in a simulation study.
Geist, G.A.; Howell, G.W.; Watkins, D.S.
1997-11-01
The BR algorithm, a new method for calculating the eigenvalues of an upper Hessenberg matrix, is introduced. It is a bulge-chasing algorithm like the QR algorithm, but, unlike the QR algorithm, it is well adapted to computing the eigenvalues of the narrowband, nearly tridiagonal matrices generated by the look-ahead Lanczos process. This paper describes the BR algorithm and gives numerical evidence that it works well in conjunction with the Lanczos process. On the biggest problems run so far, the BR algorithm beats the QR algorithm by a factor of 30--60 in computing time and a factor of over 100 in matrix storage space.
WDM Multicast Tree Construction Algorithms and Their Comparative Evaluations
NASA Astrophysics Data System (ADS)
Makabe, Tsutomu; Mikoshi, Taiju; Takenaka, Toyofumi
We propose novel tree construction algorithms for multicast communication in photonic networks. Since multicast communications consume many more link resources than unicast communications, effective algorithms for route selection and wavelength assignment are required. We propose a novel tree construction algorithm, called the Weighted Steiner Tree (WST) algorithm and a variation of the WST algorithm, called the Composite Weighted Steiner Tree (CWST) algorithm. Because these algorithms are based on the Steiner Tree algorithm, link resources among source and destination pairs tend to be commonly used and link utilization ratios are improved. Because of this, these algorithms can accept many more multicast requests than other multicast tree construction algorithms based on the Dijkstra algorithm. However, under certain delay constraints, the blocking characteristics of the proposed Weighted Steiner Tree algorithm deteriorate since some light paths between source and destinations use many hops and cannot satisfy the delay constraint. In order to adapt the approach to the delay-sensitive environments, we have devised the Composite Weighted Steiner Tree algorithm comprising the Weighted Steiner Tree algorithm and the Dijkstra algorithm for use in a delay constrained environment such as an IPTV application. In this paper, we also give the results of simulation experiments which demonstrate the superiority of the proposed Composite Weighted Steiner Tree algorithm compared with the Distributed Minimum Hop Tree (DMHT) algorithm, from the viewpoint of the light-tree request blocking.
An efficient parallel termination detection algorithm
Baker, A. H.; Crivelli, S.; Jessup, E. R.
2004-05-27
Information local to any one processor is insufficient to monitor the overall progress of most distributed computations. Typically, a second distributed computation for detecting termination of the main computation is necessary. In order to be a useful computational tool, the termination detection routine must operate concurrently with the main computation, adding minimal overhead, and it must promptly and correctly detect termination when it occurs. In this paper, we present a new algorithm for detecting the termination of a parallel computation on distributed-memory MIMD computers that satisfies all of those criteria. A variety of termination detection algorithms have been devised. Of these, the algorithm presented by Sinha, Kale, and Ramkumar (henceforth, the SKR algorithm) is unique in its ability to adapt to the load conditions of the system on which it runs, thereby minimizing the impact of termination detection on performance. Because their algorithm also detects termination quickly, we consider it to be the most efficient practical algorithm presently available. The termination detection algorithm presented here was developed for use in the PMESC programming library for distributed-memory MIMD computers. Like the SKR algorithm, our algorithm adapts to system loads and imposes little overhead. Also like the SKR algorithm, ours is tree-based, and it does not depend on any assumptions about the physical interconnection topology of the processors or the specifics of the distributed computation. In addition, our algorithm is easier to implement and requires only half as many tree traverses as does the SKR algorithm. This paper is organized as follows. In section 2, we define our computational model. In section 3, we review the SKR algorithm. We introduce our new algorithm in section 4, and prove its correctness in section 5. We discuss its efficiency and present experimental results in section 6.
NASA Technical Reports Server (NTRS)
Robinson, Michael; Steiner, Matthias; Wolff, David B.; Ferrier, Brad S.; Kessinger, Cathy; Einaudi, Franco (Technical Monitor)
2000-01-01
The primary function of the TRMM Ground Validation (GV) Program is to create GV rainfall products that provide basic validation of satellite-derived precipitation measurements for select primary sites. A fundamental and extremely important step in creating high-quality GV products is radar data quality control. Quality control (QC) processing of TRMM GV radar data is based on some automated procedures, but the current QC algorithm is not fully operational and requires significant human interaction to assure satisfactory results. Moreover, the TRMM GV QC algorithm, even with continuous manual tuning, still can not completely remove all types of spurious echoes. In an attempt to improve the current operational radar data QC procedures of the TRMM GV effort, an intercomparison of several QC algorithms has been conducted. This presentation will demonstrate how various radar data QC algorithms affect accumulated radar rainfall products. In all, six different QC algorithms will be applied to two months of WSR-88D radar data from Melbourne, Florida. Daily, five-day, and monthly accumulated radar rainfall maps will be produced for each quality-controlled data set. The QC algorithms will be evaluated and compared based on their ability to remove spurious echoes without removing significant precipitation. Strengths and weaknesses of each algorithm will be assessed based on, their abilit to mitigate both erroneous additions and reductions in rainfall accumulation from spurious echo contamination and true precipitation removal, respectively. Contamination from individual spurious echo categories will be quantified to further diagnose the abilities of each radar QC algorithm. Finally, a cost-benefit analysis will be conducted to determine if a more automated QC algorithm is a viable alternative to the current, labor-intensive QC algorithm employed by TRMM GV.
Online Pairwise Learning Algorithms.
Ying, Yiming; Zhou, Ding-Xuan
2016-04-01
Pairwise learning usually refers to a learning task that involves a loss function depending on pairs of examples, among which the most notable ones are bipartite ranking, metric learning, and AUC maximization. In this letter we study an online algorithm for pairwise learning with a least-square loss function in an unconstrained setting of a reproducing kernel Hilbert space (RKHS) that we refer to as the Online Pairwise lEaRning Algorithm (OPERA). In contrast to existing works (Kar, Sriperumbudur, Jain, & Karnick, 2013 ; Wang, Khardon, Pechyony, & Jones, 2012 ), which require that the iterates are restricted to a bounded domain or the loss function is strongly convex, OPERA is associated with a non-strongly convex objective function and learns the target function in an unconstrained RKHS. Specifically, we establish a general theorem that guarantees the almost sure convergence for the last iterate of OPERA without any assumptions on the underlying distribution. Explicit convergence rates are derived under the condition of polynomially decaying step sizes. We also establish an interesting property for a family of widely used kernels in the setting of pairwise learning and illustrate the convergence results using such kernels. Our methodology mainly depends on the characterization of RKHSs using its associated integral operators and probability inequalities for random variables with values in a Hilbert space.
ENAS-RIF algorithm for image restoration
NASA Astrophysics Data System (ADS)
Yang, Yang; Yang, Zhen-wen; Shen, Tian-shuang; Chen, Bo
2012-11-01
mage of objects is inevitably encountered by space-based working in the atmospheric turbulence environment, such as those used in astronomy, remote sensing and so on. The observed images are seriously blurred. The restoration is required for reconstruction turbulence degraded images. In order to enhance the performance of image restoration, a novel enhanced nonnegativity and support constants recursive inverse filtering(ENAS-RIF) algorithm was presented, which was based on the reliable support region and enhanced cost function. Firstly, the Curvelet denoising algorithm was used to weaken image noise. Secondly, the reliable object support region estimation was used to accelerate the algorithm convergence. Then, the average gray was set as the gray of image background pixel. Finally, an object construction limit and the logarithm function were add to enhance algorithm stability. The experimental results prove that the convergence speed of the novel ENAS-RIF algorithm is faster than that of NAS-RIF algorithm and it is better in image restoration.
Tajaldeen, A; Ramachandran, P; Geso, M
2015-06-15
Purpose: The purpose of this study was to investigate and quantify the variation in dose distributions in small field lung cancer radiotherapy using seven different dose calculation algorithms. Methods: The study was performed in 21 lung cancer patients who underwent Stereotactic Ablative Body Radiotherapy (SABR). Two different methods (i) Same dose coverage to the target volume (named as same dose method) (ii) Same monitor units in all algorithms (named as same monitor units) were used for studying the performance of seven different dose calculation algorithms in XiO and Eclipse treatment planning systems. The seven dose calculation algorithms include Superposition, Fast superposition, Fast Fourier Transform ( FFT) Convolution, Clarkson, Anisotropic Analytic Algorithm (AAA), Acurous XB and pencil beam (PB) algorithms. Prior to this, a phantom study was performed to assess the accuracy of these algorithms. Superposition algorithm was used as a reference algorithm in this study. The treatment plans were compared using different dosimetric parameters including conformity, heterogeneity and dose fall off index. In addition to this, the dose to critical structures like lungs, heart, oesophagus and spinal cord were also studied. Statistical analysis was performed using Prism software. Results: The mean±stdev with conformity index for Superposition, Fast superposition, Clarkson and FFT convolution algorithms were 1.29±0.13, 1.31±0.16, 2.2±0.7 and 2.17±0.59 respectively whereas for AAA, pencil beam and Acurous XB were 1.4±0.27, 1.66±0.27 and 1.35±0.24 respectively. Conclusion: Our study showed significant variations among the seven different algorithms. Superposition and AcurosXB algorithms showed similar values for most of the dosimetric parameters. Clarkson, FFT convolution and pencil beam algorithms showed large differences as compared to superposition algorithms. Based on our study, we recommend Superposition and AcurosXB algorithms as the first choice of
A region labeling algorithm based on block
NASA Astrophysics Data System (ADS)
Wang, Jing
2009-10-01
The time performance of region labeling algorithm is important for image process. However, common region labeling algorithms cannot meet the requirements of real-time image processing. In this paper, a technique using block to record the connective area is proposed. By this technique, connective closure and information related to the target can be computed during a one-time image scan. It records the edge pixel's coordinate, including outer side edges and inner side edges, as well as the label, and then it can calculate connecting area's shape center, area and gray. Compared to others, this block based region labeling algorithm is more efficient. It can well meet the time requirements of real-time processing. Experiment results also validate the correctness and efficiency of the algorithm. Experiment results show that it can detect any connecting areas in binary images, which contains various complex and quaint patterns. The block labeling algorithm is used in a real-time image processing program now.
Optimizing connected component labeling algorithms
NASA Astrophysics Data System (ADS)
Wu, Kesheng; Otoo, Ekow; Shoshani, Arie
2005-04-01
This paper presents two new strategies that can be used to greatly improve the speed of connected component labeling algorithms. To assign a label to a new object, most connected component labeling algorithms use a scanning step that examines some of its neighbors. The first strategy exploits the dependencies among them to reduce the number of neighbors examined. When considering 8-connected components in a 2D image, this can reduce the number of neighbors examined from four to one in many cases. The second strategy uses an array to store the equivalence information among the labels. This replaces the pointer based rooted trees used to store the same equivalence information. It reduces the memory required and also produces consecutive final labels. Using an array instead of the pointer based rooted trees speeds up the connected component labeling algorithms by a factor of 5 ~ 100 in our tests on random binary images.
Fighting Censorship with Algorithms
NASA Astrophysics Data System (ADS)
Mahdian, Mohammad
In countries such as China or Iran where Internet censorship is prevalent, users usually rely on proxies or anonymizers to freely access the web. The obvious difficulty with this approach is that once the address of a proxy or an anonymizer is announced for use to the public, the authorities can easily filter all traffic to that address. This poses a challenge as to how proxy addresses can be announced to users without leaking too much information to the censorship authorities. In this paper, we formulate this question as an interesting algorithmic problem. We study this problem in a static and a dynamic model, and give almost tight bounds on the number of proxy servers required to give access to n people k of whom are adversaries. We will also discuss how trust networks can be used in this context.
Motion Cueing Algorithm Development: Initial Investigation and Redesign of the Algorithms
NASA Technical Reports Server (NTRS)
Telban, Robert J.; Wu, Weimin; Cardullo, Frank M.; Houck, Jacob A. (Technical Monitor)
2000-01-01
In this project four motion cueing algorithms were initially investigated. The classical algorithm generated results with large distortion and delay and low magnitude. The NASA adaptive algorithm proved to be well tuned with satisfactory performance, while the UTIAS adaptive algorithm produced less desirable results. Modifications were made to the adaptive algorithms to reduce the magnitude of undesirable spikes. The optimal algorithm was found to have the potential for improved performance with further redesign. The center of simulator rotation was redefined. More terms were added to the cost function to enable more tuning flexibility. A new design approach using a Fortran/Matlab/Simulink setup was employed. A new semicircular canals model was incorporated in the algorithm. With these changes results show the optimal algorithm has some advantages over the NASA adaptive algorithm. Two general problems observed in the initial investigation required solutions. A nonlinear gain algorithm was developed that scales the aircraft inputs by a third-order polynomial, maximizing the motion cues while remaining within the operational limits of the motion system. A braking algorithm was developed to bring the simulator to a full stop at its motion limit and later release the brake to follow the cueing algorithm output.
Margolis, C Z
1983-02-04
The clinical algorithm (flow chart) is a text format that is specially suited for representing a sequence of clinical decisions, for teaching clinical decision making, and for guiding patient care. A representative clinical algorithm is described in detail; five steps for writing an algorithm and seven steps for writing a set of algorithms are outlined. Five clinical education and patient care uses of algorithms are then discussed, including a map for teaching clinical decision making and protocol charts for guiding step-by-step care of specific problems. Clinical algorithms are compared as to their clinical usefulness with decision analysis. Three objections to clinical algorithms are answered, including the one that they restrict thinking. It is concluded that methods should be sought for writing clinical algorithms that represent expert consensus. A clinical algorithm could then be written for any area of medical decision making that can be standardized. Medical practice could then be taught more effectively, monitored accurately, and understood better.
Significance of periodogram peaks
NASA Astrophysics Data System (ADS)
Süveges, Maria; Guy, Leanne; Zucker, Shay
2016-10-01
Three versions of significance measures or False Alarm Probabilities (FAPs) for periodogram peaks are presented and compared for sinusoidal and box-like signals, with specific application on large-scale surveys in mind.
Conflict-Aware Scheduling Algorithm
NASA Technical Reports Server (NTRS)
Wang, Yeou-Fang; Borden, Chester
2006-01-01
conflict-aware scheduling algorithm is being developed to help automate the allocation of NASA s Deep Space Network (DSN) antennas and equipment that are used to communicate with interplanetary scientific spacecraft. The current approach for scheduling DSN ground resources seeks to provide an equitable distribution of tracking services among the multiple scientific missions and is very labor intensive. Due to the large (and increasing) number of mission requests for DSN services, combined with technical and geometric constraints, the DSN is highly oversubscribed. To help automate the process, and reduce the DSN and spaceflight project labor effort required for initiating, maintaining, and negotiating schedules, a new scheduling algorithm is being developed. The scheduling algorithm generates a "conflict-aware" schedule, where all requests are scheduled based on a dynamic priority scheme. The conflict-aware scheduling algorithm allocates all requests for DSN tracking services while identifying and maintaining the conflicts to facilitate collaboration and negotiation between spaceflight missions. These contrast with traditional "conflict-free" scheduling algorithms that assign tracks that are not in conflict and mark the remainder as unscheduled. In the case where full schedule automation is desired (based on mission/event priorities, fairness, allocation rules, geometric constraints, and ground system capabilities/ constraints), a conflict-free schedule can easily be created from the conflict-aware schedule by removing lower priority items that are in conflict.
Algorithms for automated DNA assembly
Densmore, Douglas; Hsiau, Timothy H.-C.; Kittleson, Joshua T.; DeLoache, Will; Batten, Christopher; Anderson, J. Christopher
2010-01-01
Generating a defined set of genetic constructs within a large combinatorial space provides a powerful method for engineering novel biological functions. However, the process of assembling more than a few specific DNA sequences can be costly, time consuming and error prone. Even if a correct theoretical construction scheme is developed manually, it is likely to be suboptimal by any number of cost metrics. Modular, robust and formal approaches are needed for exploring these vast design spaces. By automating the design of DNA fabrication schemes using computational algorithms, we can eliminate human error while reducing redundant operations, thus minimizing the time and cost required for conducting biological engineering experiments. Here, we provide algorithms that optimize the simultaneous assembly of a collection of related DNA sequences. We compare our algorithms to an exhaustive search on a small synthetic dataset and our results show that our algorithms can quickly find an optimal solution. Comparison with random search approaches on two real-world datasets show that our algorithms can also quickly find lower-cost solutions for large datasets. PMID:20335162
Threshold extended ID3 algorithm
NASA Astrophysics Data System (ADS)
Kumar, A. B. Rajesh; Ramesh, C. Phani; Madhusudhan, E.; Padmavathamma, M.
2012-04-01
Information exchange over insecure networks needs to provide authentication and confidentiality to the database in significant problem in datamining. In this paper we propose a novel authenticated multiparty ID3 Algorithm used to construct multiparty secret sharing decision tree for implementation in medical transactions.
Experiments with a Parallel Multi-Objective Evolutionary Algorithm for Scheduling
NASA Technical Reports Server (NTRS)
Brown, Matthew; Johnston, Mark D.
2013-01-01
Evolutionary multi-objective algorithms have great potential for scheduling in those situations where tradeoffs among competing objectives represent a key requirement. One challenge, however, is runtime performance, as a consequence of evolving not just a single schedule, but an entire population, while attempting to sample the Pareto frontier as accurately and uniformly as possible. The growing availability of multi-core processors in end user workstations, and even laptops, has raised the question of the extent to which such hardware can be used to speed up evolutionary algorithms. In this paper we report on early experiments in parallelizing a Generalized Differential Evolution (GDE) algorithm for scheduling long-range activities on NASA's Deep Space Network. Initial results show that significant speedups can be achieved, but that performance does not necessarily improve as more cores are utilized. We describe our preliminary results and some initial suggestions from parallelizing the GDE algorithm. Directions for future work are outlined.
Wavelet based edge detection algorithm for web surface inspection of coated board web
NASA Astrophysics Data System (ADS)
Barjaktarovic, M.; Petricevic, S.
2010-07-01
This paper presents significant improvement of the already installed vision system. System was designed for real time coated board inspection. The improvement is achieved with development of a new algorithm for edge detection. The algorithm is based on the redundant (undecimated) wavelet transform. Compared to the existing algorithm better delineation of edges is achieved. This yields to better defect detection probability and more accurate geometrical classification, which will provide additional reduction of waste. Also, algorithm will provide detailed classification and more reliably tracking of defects. This improvement requires minimal changes in processing hardware, only a replacement of the graphic card would be needed, adding only negligibly to the system cost. Other changes are accomplished entirely in the image processing software.
An algorithm for the automatic synchronization of Omega receivers
NASA Technical Reports Server (NTRS)
Stonestreet, W. M.; Marzetta, T. L.
1977-01-01
The Omega navigation system and the requirement for receiver synchronization are discussed. A description of the synchronization algorithm is provided. The numerical simulation and its associated assumptions were examined and results of the simulation are presented. The suggested form of the synchronization algorithm and the suggested receiver design values were surveyed. A Fortran of the synchronization algorithm used in the simulation was also included.
Statistical Significance Testing.
ERIC Educational Resources Information Center
McLean, James E., Ed.; Kaufman, Alan S., Ed.
1998-01-01
The controversy about the use or misuse of statistical significance testing has become the major methodological issue in educational research. This special issue contains three articles that explore the controversy, three commentaries on these articles, an overall response, and three rejoinders by the first three authors. They are: (1)…
NASA Technical Reports Server (NTRS)
Black, D. C.
1986-01-01
The significance of brown dwarfs for resolving some major problems in astronomy is discussed. The importance of brown dwarfs for models of star formation by fragmentation of molecular clouds and for obtaining independent measurements of the ages of stars in binary systems is addressed. The relationship of brown dwarfs to planets is considered.
Adaptive-feedback control algorithm.
Huang, Debin
2006-06-01
This paper is motivated by giving the detailed proofs and some interesting remarks on the results the author obtained in a series of papers [Phys. Rev. Lett. 93, 214101 (2004); Phys. Rev. E 71, 037203 (2005); 69, 067201 (2004)], where an adaptive-feedback algorithm was proposed to effectively stabilize and synchronize chaotic systems. This note proves in detail the strictness of this algorithm from the viewpoint of mathematics, and gives some interesting remarks for its potential applications to chaos control & synchronization. In addition, a significant comment on synchronization-based parameter estimation is given, which shows some techniques proposed in literature less strict and ineffective in some cases.
Evaluation of an optimal aerocapture guidance algorithm for human Mars missions
NASA Astrophysics Data System (ADS)
Webb, Kyle
Aeroassist guidance is concerned with providing steering commands to a vehicle flying through a planetary atmosphere in the form of an aerodynamic roll angle, or bank angle, which results in appropriate direction of the aerodynamic lift force so that the vehicle will safely and accurately reach its designated final condition. Aerocapture guidance is a particular subcategory of aeroassist guidance that involves atmospheric entry from an interplanetary transfer orbit, a guided flight through the atmosphere, and a final condition consisting of a post-atmospheric exit target orbit around the planet. Using aerocapture guidance to establish this target orbit can provide significant propellant mass savings when compared to traditional propulsive maneuvers. No current aerocapture guidance algorithms can ensure truly optimal performance in minimizing post-exit orbit insertion ?V requirements. This thesis investigates the development of a two-phase optimal aerocapture guidance algorithm. This closed-loop guidance algorithm uses a mathematically optimal bang-bang bank angle profile structure, in which a vehicle first flies with the lift vector pointed straight up, and then flies full lift-down until atmospheric exit. The optimal trajectory is found by determining the switching time between full lift-up and full lift-down flight. Results from testing the algorithm in a high-fidelity NASA simulation environment are presented and compared with results from existing state-of-the-art aerocapture guidance algorithms. These results show that the developed algorithm provides the robustness and adaptability of a numerical predictor-corrector guidance algorithm while demonstrating a significant reduction in ?V requirements compared to other existing algorithms.
Software For Genetic Algorithms
NASA Technical Reports Server (NTRS)
Wang, Lui; Bayer, Steve E.
1992-01-01
SPLICER computer program is genetic-algorithm software tool used to solve search and optimization problems. Provides underlying framework and structure for building genetic-algorithm application program. Written in Think C.
Algorithm-development activities
NASA Technical Reports Server (NTRS)
Carder, Kendall L.
1994-01-01
The task of algorithm-development activities at USF continues. The algorithm for determining chlorophyll alpha concentration, (Chl alpha) and gelbstoff absorption coefficient for SeaWiFS and MODIS-N radiance data is our current priority.
Automatic control algorithm effects on energy production
NASA Technical Reports Server (NTRS)
Mcnerney, G. M.
1981-01-01
A computer model was developed using actual wind time series and turbine performance data to simulate the power produced by the Sandia 17-m VAWT operating in automatic control. The model was used to investigate the influence of starting algorithms on annual energy production. The results indicate that, depending on turbine and local wind characteristics, a bad choice of a control algorithm can significantly reduce overall energy production. The model can be used to select control algorithms and threshold parameters that maximize long term energy production. The results from local site and turbine characteristics were generalized to obtain general guidelines for control algorithm design.
Accurate Finite Difference Algorithms
NASA Technical Reports Server (NTRS)
Goodrich, John W.
1996-01-01
Two families of finite difference algorithms for computational aeroacoustics are presented and compared. All of the algorithms are single step explicit methods, they have the same order of accuracy in both space and time, with examples up to eleventh order, and they have multidimensional extensions. One of the algorithm families has spectral like high resolution. Propagation with high order and high resolution algorithms can produce accurate results after O(10(exp 6)) periods of propagation with eight grid points per wavelength.
Quantum algorithms: an overview
NASA Astrophysics Data System (ADS)
Montanaro, Ashley
2016-01-01
Quantum computers are designed to outperform standard computers by running quantum algorithms. Areas in which quantum algorithms can be applied include cryptography, search and optimisation, simulation of quantum systems and solving large systems of linear equations. Here we briefly survey some known quantum algorithms, with an emphasis on a broad overview of their applications rather than their technical details. We include a discussion of recent developments and near-term applications of quantum algorithms.
INSENS classification algorithm report
Hernandez, J.E.; Frerking, C.J.; Myers, D.W.
1993-07-28
This report describes a new algorithm developed for the Imigration and Naturalization Service (INS) in support of the INSENS project for classifying vehicles and pedestrians using seismic data. This algorithm is less sensitive to nuisance alarms due to environmental events than the previous algorithm. Furthermore, the algorithm is simple enough that it can be implemented in the 8-bit microprocessor used in the INSENS system.
On the convergence of the phase gradient autofocus algorithm for synthetic aperture radar imaging
Hicks, M.J.
1996-01-01
Synthetic Aperture Radar (SAR) imaging is a class of coherent range and Doppler signal processing techniques applied to remote sensing. The aperture is synthesized by recording and processing coherent signals at known positions along the flight path. Demands for greater image resolution put an extreme burden on requirements for inertial measurement units that are used to maintain accurate pulse-to-pulse position information. The recently developed Phase Gradient Autofocus algorithm relieves this burden by taking a data-driven digital signal processing approach to estimating the range-invariant phase aberrations due to either uncompensated motions of the SAR platform or to atmospheric turbulence. Although the performance of this four-step algorithm has been demonstrated, its convergence has not been modeled mathematically. A new sensitivity study of algorithm performance is a necessary step towards this model. Insights that are significant to the application of this algorithm to both SAR and to other coherent imaging applications are developed. New details on algorithm implementation identify an easily avoided biased phase estimate. A new algorithm for defining support of the point spread function is proposed, which promises to reduce the number of iterations required even for rural scenes with low signal-to-clutter ratios.
Composite Defect Significance.
1982-07-13
A12i 299 COMPOSITE DEFECT SIGNIFICANCE(U) MATERIALS SCIENCES 1/1 \\ CORP SPRING HOUSE PA S N CHATTERJEE ET AL. 13 JUL 82 MSC/TFR/1288/il87 NADC-80848...Directorate 30 Sensors & Avionics Technology Directorate 40 Communication & Navigation Technology Directorate 50 Software Computer Directorate 60 Aircraft ...instructions concerning commercial products herein do not constitute an endorsement by the Government nor do they convey or imply the license or right to use
NASA Astrophysics Data System (ADS)
Dunbar, P. K.; Furtney, M.; McLean, S. J.; Sweeney, A. D.
2014-12-01
Tsunamis have inflicted death and destruction on the coastlines of the world throughout history. The occurrence of tsunamis and the resulting effects have been collected and studied as far back as the second millennium B.C. The knowledge gained from cataloging and examining these events has led to significant changes in our understanding of tsunamis, tsunami sources, and methods to mitigate the effects of tsunamis. The most significant, not surprisingly, are often the most devastating, such as the 2011 Tohoku, Japan earthquake and tsunami. The goal of this poster is to give a brief overview of the occurrence of tsunamis and then focus specifically on several significant tsunamis. There are various criteria to determine the most significant tsunamis: the number of deaths, amount of damage, maximum runup height, had a major impact on tsunami science or policy, etc. As a result, descriptions will include some of the most costly (2011 Tohoku, Japan), the most deadly (2004 Sumatra, 1883 Krakatau), and the highest runup ever observed (1958 Lituya Bay, Alaska). The discovery of the Cascadia subduction zone as the source of the 1700 Japanese "Orphan" tsunami and a future tsunami threat to the U.S. northwest coast, contributed to the decision to form the U.S. National Tsunami Hazard Mitigation Program. The great Lisbon earthquake of 1755 marked the beginning of the modern era of seismology. Knowledge gained from the 1964 Alaska earthquake and tsunami helped confirm the theory of plate tectonics. The 1946 Alaska, 1952 Kuril Islands, 1960 Chile, 1964 Alaska, and the 2004 Banda Aceh, tsunamis all resulted in warning centers or systems being established.The data descriptions on this poster were extracted from NOAA's National Geophysical Data Center (NGDC) global historical tsunami database. Additional information about these tsunamis, as well as water level data can be found by accessing the NGDC website www.ngdc.noaa.gov/hazard/
Visualizing output for a data learning algorithm
NASA Astrophysics Data System (ADS)
Carson, Daniel; Graham, James; Ternovskiy, Igor
2016-05-01
This paper details the process we went through to visualize the output for our data learning algorithm. We have been developing a hierarchical self-structuring learning algorithm based around the general principles of the LaRue model. One example of a proposed application of this algorithm would be traffic analysis, chosen because it is conceptually easy to follow and there is a significant amount of already existing data and related research material with which to work with. While we choose the tracking of vehicles for our initial approach, it is by no means the only target of our algorithm. Flexibility is the end goal, however, we still need somewhere to start. To that end, this paper details our creation of the visualization GUI for our algorithm, the features we included and the initial results we obtained from our algorithm running a few of the traffic based scenarios we designed.
NASA Astrophysics Data System (ADS)
Graf, Norman A.
2001-07-01
An object-oriented framework for undertaking clustering algorithm studies has been developed. We present here the definitions for the abstract Cells and Clusters as well as the interface for the algorithm. We intend to use this framework to investigate the interplay between various clustering algorithms and the resulting jet reconstruction efficiency and energy resolutions to assist in the design of the calorimeter detector.
Distilling the Verification Process for Prognostics Algorithms
NASA Technical Reports Server (NTRS)
Roychoudhury, Indranil; Saxena, Abhinav; Celaya, Jose R.; Goebel, Kai
2013-01-01
The goal of prognostics and health management (PHM) systems is to ensure system safety, and reduce downtime and maintenance costs. It is important that a PHM system is verified and validated before it can be successfully deployed. Prognostics algorithms are integral parts of PHM systems. This paper investigates a systematic process of verification of such prognostics algorithms. To this end, first, this paper distinguishes between technology maturation and product development. Then, the paper describes the verification process for a prognostics algorithm as it moves up to higher maturity levels. This process is shown to be an iterative process where verification activities are interleaved with validation activities at each maturation level. In this work, we adopt the concept of technology readiness levels (TRLs) to represent the different maturity levels of a prognostics algorithm. It is shown that at each TRL, the verification of a prognostics algorithm depends on verifying the different components of the algorithm according to the requirements laid out by the PHM system that adopts this prognostics algorithm. Finally, using simplified examples, the systematic process for verifying a prognostics algorithm is demonstrated as the prognostics algorithm moves up TRLs.
The remote sensing image segmentation mean shift algorithm parallel processing based on MapReduce
NASA Astrophysics Data System (ADS)
Chen, Xi; Zhou, Liqing
2015-12-01
With the development of satellite remote sensing technology and the remote sensing image data, traditional remote sensing image segmentation technology cannot meet the massive remote sensing image processing and storage requirements. This article put cloud computing and parallel computing technology in remote sensing image segmentation process, and build a cheap and efficient computer cluster system that uses parallel processing to achieve MeanShift algorithm of remote sensing image segmentation based on the MapReduce model, not only to ensure the quality of remote sensing image segmentation, improved split speed, and better meet the real-time requirements. The remote sensing image segmentation MeanShift algorithm parallel processing algorithm based on MapReduce shows certain significance and a realization of value.
Design and Optimization of Low-thrust Orbit Transfers Using Q-law and Evolutionary Algorithms
NASA Technical Reports Server (NTRS)
Lee, Seungwon; vonAllmen, Paul; Fink, Wolfgang; Petropoulos, Anastassios; Terrile, Richard
2005-01-01
Future space missions will depend more on low-thrust propulsion (such as ion engines) thanks to its high specific impulse. Yet, the design of low-thrust trajectories is complex and challenging. Third-body perturbations often dominate the thrust, and a significant change to the orbit requires a long duration of thrust. In order to guide the early design phases, we have developed an efficient and efficacious method to obtain approximate propellant and flight-time requirements (i.e., the Pareto front) for orbit transfers. A search for the Pareto-optimal trajectories is done in two levels: optimal thrust angles and locations are determined by Q-law, while the Q-law is optimized with two evolutionary algorithms: a genetic algorithm and a simulated-annealing-related algorithm. The examples considered are several types of orbit transfers around the Earth and the asteroid Vesta.
A denoising algorithm for projection measurements in cone-beam computed tomography.
Karimi, Davood; Ward, Rabab
2016-02-01
The ability to reduce the radiation dose in computed tomography (CT) is limited by the excessive quantum noise present in the projection measurements. Sinogram denoising is, therefore, an essential step towards reconstructing high-quality images, especially in low-dose CT. Effective denoising requires accurate modeling of the photon statistics and of the prior knowledge about the characteristics of the projection measurements. This paper proposes an algorithm for denoising low-dose sinograms in cone-beam CT. The proposed algorithm is based on minimizing a cost function that includes a measurement consistency term and two regularizations in terms of the gradient and the Hessian of the sinogram. This choice of the regularization is motivated by the nature of CT projections. We use a split Bregman algorithm to minimize the proposed cost function. We apply the algorithm on simulated and real cone-beam projections and compare the results with another algorithm based on bilateral filtering. Our experiments with simulated and real data demonstrate the effectiveness of the proposed algorithm. Denoising of the projections with the proposed algorithm leads to a significant reduction of the noise in the reconstructed images without oversmoothing the edges or introducing artifacts.
Testing block subdivision algorithms on block designs
NASA Astrophysics Data System (ADS)
Wiseman, Natalie; Patterson, Zachary
2016-01-01
Integrated land use-transportation models predict future transportation demand taking into account how households and firms arrange themselves partly as a function of the transportation system. Recent integrated models require parcels as inputs and produce household and employment predictions at the parcel scale. Block subdivision algorithms automatically generate parcel patterns within blocks. Evaluating block subdivision algorithms is done by way of generating parcels and comparing them to those in a parcel database. Three block subdivision algorithms are evaluated on how closely they reproduce parcels of different block types found in a parcel database from Montreal, Canada. While the authors who developed each of the algorithms have evaluated them, they have used their own metrics and block types to evaluate their own algorithms. This makes it difficult to compare their strengths and weaknesses. The contribution of this paper is in resolving this difficulty with the aim of finding a better algorithm suited to subdividing each block type. The proposed hypothesis is that given the different approaches that block subdivision algorithms take, it's likely that different algorithms are better adapted to subdividing different block types. To test this, a standardized block type classification is used that consists of mutually exclusive and comprehensive categories. A statistical method is used for finding a better algorithm and the probability it will perform well for a given block type. Results suggest the oriented bounding box algorithm performs better for warped non-uniform sites, as well as gridiron and fragmented uniform sites. It also produces more similar parcel areas and widths. The Generalized Parcel Divider 1 algorithm performs better for gridiron non-uniform sites. The Straight Skeleton algorithm performs better for loop and lollipop networks as well as fragmented non-uniform and warped uniform sites. It also produces more similar parcel shapes and patterns.
NASA Technical Reports Server (NTRS)
Scheller, J.
1979-01-01
Space Shuttle payload safety requirements are summarized. Consideration is given to NASA objectives on STS payloads, payload safety documents, STS payload safety management, safety implementation possibilities, the hazard control procedure, and significant technical requirements.
A novel hardware-friendly algorithm for hyperspectral linear unmixing
NASA Astrophysics Data System (ADS)
Guerra, Raúl; Santos, Lucana; López, Sebastián.; Sarmiento, Roberto
2015-10-01
Linear unmixing of hyperspectral images has rapidly become one of the most widely utilized tools for analyzing the content of hyperspectral images captured by state-of-the-art remote hyperspectral sensors. The aforementioned unmixing process consists of the following three sequential steps: dimensionality estimation, endmember extraction and abundances computation. Within this procedure, the first two steps are by far the most demanding from a computational point of view, since they involve a large amount of matrix operations. Moreover, the complex nature of these operations seriously difficult the hardware implementation of these two unmixing steps, leading to non-optimized implementations which are not able to satisfy the strict delay requirements imposed by those applications under real-time or near real-time requirements. This paper uncovers a new algorithm which is capable of estimating the number of endmembers and extracting them from a given hyperspectral image with at least the same accuracy than state-of-the-art approaches while demanding a much lower computational effort, with independence of the characteristics of the image under analysis. In particular, the proposed algorithm is based on the concept of orthogonal projections and allows performing the estimation of the number of end- members and their extraction simultaneously, using simple operations, which can be also easily parallelized. In this sense, it is worth to mention that our algorithm does not perform complex matrix operations, such as the inverse of a matrix or the extraction of eigenvalues and eigenvectors, which makes easier its ulterior hardware. The experimental results obtained with synthetic and real hyperspectral images demonstrate that the accuracy obtained with the proposed algorithm when estimating the number of endmembers and extracting them is similar or better than the one provided by well-known state-of-the-art algorithms, while the complexity of the overall process is
Exact significance test for Markov order
NASA Astrophysics Data System (ADS)
Pethel, S. D.; Hahs, D. W.
2014-02-01
We describe an exact significance test of the null hypothesis that a Markov chain is nth order. The procedure utilizes surrogate data to yield an exact test statistic distribution valid for any sample size. Surrogate data are generated using a novel algorithm that guarantees, per shot, a uniform sampling from the set of sequences that exactly match the nth order properties of the observed data. Using the test, the Markov order of Tel Aviv rainfall data is examined.
PSD Significance Levels for Monitoring
This document may be of assistance in applying the New Source Review (NSR) air permitting regulations including the Prevention of Significant Deterioration (PSD) requirements. This document is part of the NSR Policy and Guidance Database. Some documents in the database are a scanned or retyped version of a paper photocopy of the original. Although we have taken considerable effort to quality assure the documents, some may contain typographical errors. Contact the office that issued the document if you need a copy of the original.
A Parallel Rendering Algorithm for MIMD Architectures
NASA Technical Reports Server (NTRS)
Crockett, Thomas W.; Orloff, Tobias
1991-01-01
Applications such as animation and scientific visualization demand high performance rendering of complex three dimensional scenes. To deliver the necessary rendering rates, highly parallel hardware architectures are required. The challenge is then to design algorithms and software which effectively use the hardware parallelism. A rendering algorithm targeted to distributed memory MIMD architectures is described. For maximum performance, the algorithm exploits both object-level and pixel-level parallelism. The behavior of the algorithm is examined both analytically and experimentally. Its performance for large numbers of processors is found to be limited primarily by communication overheads. An experimental implementation for the Intel iPSC/860 shows increasing performance from 1 to 128 processors across a wide range of scene complexities. It is shown that minimal modifications to the algorithm will adapt it for use on shared memory architectures as well.
An efficient quantum algorithm for spectral estimation
NASA Astrophysics Data System (ADS)
Steffens, Adrian; Rebentrost, Patrick; Marvian, Iman; Eisert, Jens; Lloyd, Seth
2017-03-01
We develop an efficient quantum implementation of an important signal processing algorithm for line spectral estimation: the matrix pencil method, which determines the frequencies and damping factors of signals consisting of finite sums of exponentially damped sinusoids. Our algorithm provides a quantum speedup in a natural regime where the sampling rate is much higher than the number of sinusoid components. Along the way, we develop techniques that are expected to be useful for other quantum algorithms as well—consecutive phase estimations to efficiently make products of asymmetric low rank matrices classically accessible and an alternative method to efficiently exponentiate non-Hermitian matrices. Our algorithm features an efficient quantum–classical division of labor: the time-critical steps are implemented in quantum superposition, while an interjacent step, requiring much fewer parameters, can operate classically. We show that frequencies and damping factors can be obtained in time logarithmic in the number of sampling points, exponentially faster than known classical algorithms.
Algorithms for security in robotics and networks
NASA Astrophysics Data System (ADS)
Simov, Borislav Hristov
The dissertation presents algorithms for robotics and security. The first chapter gives an overview of the area of visibility-based pursuit-evasion. The following two chapters introduce two specific algorithms in that area. The algorithms are based on research done together with Dr. Giora Slutzki and Dr. Steven LaValle. Chapter 2 presents a polynomial-time algorithm for clearing a polygon by a single 1-searcher. The result is extended to a polynomial-time algorithm for a pair of 1-searchers in Chapter 3. Chapters 4 and 5 contain joint research with Dr. Srini Tridandapani, Dr. Jason Jue and Dr. Michael Borella in the area of computer networks. Chapter 4 presents a method of providing privacy over an insecure channel which does not require encryption. Chapter 5 gives approximate bounds for the link utilization in multicast traffic.
Scheduling with genetic algorithms
NASA Technical Reports Server (NTRS)
Fennel, Theron R.; Underbrink, A. J., Jr.; Williams, George P. W., Jr.
1994-01-01
In many domains, scheduling a sequence of jobs is an important function contributing to the overall efficiency of the operation. At Boeing, we develop schedules for many different domains, including assembly of military and commercial aircraft, weapons systems, and space vehicles. Boeing is under contract to develop scheduling systems for the Space Station Payload Planning System (PPS) and Payload Operations and Integration Center (POIC). These applications require that we respect certain sequencing restrictions among the jobs to be scheduled while at the same time assigning resources to the jobs. We call this general problem scheduling and resource allocation. Genetic algorithms (GA's) offer a search method that uses a population of solutions and benefits from intrinsic parallelism to search the problem space rapidly, producing near-optimal solutions. Good intermediate solutions are probabalistically recombined to produce better offspring (based upon some application specific measure of solution fitness, e.g., minimum flowtime, or schedule completeness). Also, at any point in the search, any intermediate solution can be accepted as a final solution; allowing the search to proceed longer usually produces a better solution while terminating the search at virtually any time may yield an acceptable solution. Many processes are constrained by restrictions of sequence among the individual jobs. For a specific job, other jobs must be completed beforehand. While there are obviously many other constraints on processes, it is these on which we focussed for this research: how to allocate crews to jobs while satisfying job precedence requirements and personnel, and tooling and fixture (or, more generally, resource) requirements.
Tectonic significance of serpentinites
NASA Astrophysics Data System (ADS)
Guillot, Stéphane; Schwartz, Stéphane; Reynard, Bruno; Agard, Philippe; Prigent, Cécile
2015-04-01
At plate boundaries, where deformation is localized along centimetre- to kilometre-scale shear zones, the influence of serpentinite on tectonic processes is linked to its unique rheological properties. In this paper we review the physical properties of serpentinites and their role in tectonic processes. At the ocean-continent transition, serpentinization weakens the upper mantle layer, promoting strain localization and allowing the normal faults in the distal margin to root at low angle. Similarly, at slow to ultra-slow spreading ridges, serpentinite is potentially very abundant at the seafloor and locally associated with domal structures. Extensional deformation is localized in a ~ 100 m thick shear zone at the footwall of detachment zones dominated by serpentine derived minerals. Within subduction zone, the depth of decoupling between the mantle wedge and the subducting slab corresponds to the stability depth of serpentine weak mineral. Dehydration of serpentine has also been hypothesized to play an important role in the origin of double seismic zones, however the exact mechanism through which dehydration promotes seismicity remains a matter of debate. During exhumation of high-pressure or ultrahigh-pressure rocks, the opposite trajectories of exhumation and subduction require a decoupling zone within the subducting slab. A serpentinized layer has the potential to become a decoupling zone between the oceanic crust and underlying lithosphere. The buoyancy of serpentinite also likely contributes to eclogite exhumation. Finally, along major strike-slip faults, serpentinites have been associated with fault creep, as well as low fault strength. The presence of serpentinite blocks along creeping segments of active faults worldwide is therefore likely to originate from fluids deriving from the progressive dehydration of the mantle wedge that move such bodies upward.
Algorithms for Automatic Alignment of Arrays
NASA Technical Reports Server (NTRS)
Chatterjee, Siddhartha; Gilbert, John R.; Oliker, Leonid; Schreiber, Robert; Sheffler, Thomas J.
1996-01-01
Aggregate data objects (such as arrays) are distributed across the processor memories when compiling a data-parallel language for a distributed-memory machine. The mapping determines the amount of communication needed to bring operands of parallel operations into alignment with each other. A common approach is to break the mapping into two stages: an alignment that maps all the objects to an abstract template, followed by a distribution that maps the template to the processors. This paper describes algorithms for solving the various facets of the alignment problem: axis and stride alignment, static and mobile offset alignment, and replication labeling. We show that optimal axis and stride alignment is NP-complete for general program graphs, and give a heuristic method that can explore the space of possible solutions in a number of ways. We show that some of these strategies can give better solutions than a simple greedy approach proposed earlier. We also show how local graph contractions can reduce the size of the problem significantly without changing the best solution. This allows more complex and effective heuristics to be used. We show how to model the static offset alignment problem using linear programming, and we show that loop-dependent mobile offset alignment is sometimes necessary for optimum performance. We describe an algorithm with for determining mobile alignments for objects within do loops. We also identify situations in which replicated alignment is either required by the program itself or can be used to improve performance. We describe an algorithm based on network flow that replicates objects so as to minimize the total amount of broadcast communication in replication.
GPU acceleration of simplex volume algorithm for hyperspectral endmember extraction
NASA Astrophysics Data System (ADS)
Qu, Haicheng; Zhang, Junping; Lin, Zhouhan; Chen, Hao; Huang, Bormin
2012-10-01
The simplex volume algorithm (SVA)1 is an endmember extraction algorithm based on the geometrical properties of a simplex in the feature space of hyperspectral image. By utilizing the relation between a simplex volume and its corresponding parallelohedron volume in the high-dimensional space, the algorithm extracts endmembers from the initial hyperspectral image directly without the need of dimension reduction. It thus avoids the drawback of the N-FINDER algorithm, which requires the dimension of the data to be reduced to one less than the number of the endmembers. In this paper, we take advantage of the large-scale parallelism of CUDA (Compute Unified Device Architecture) to accelerate the computation of SVA on the NVidia GeForce 560 GPU. The time for computing a simplex volume increases with the number of endmembers. Experimental results show that the proposed GPU-based SVA achieves a significant 112.56x speedup for extracting 16 endmembers, as compared to its CPU-based single-threaded counterpart.
Diagnostic Accuracy Comparison of Artificial Immune Algorithms for Primary Headaches
Çelik, Ufuk; Yurtay, Nilüfer; Koç, Emine Rabia; Tepe, Nermin; Güllüoğlu, Halil; Ertaş, Mustafa
2015-01-01
The present study evaluated the diagnostic accuracy of immune system algorithms with the aim of classifying the primary types of headache that are not related to any organic etiology. They are divided into four types: migraine, tension, cluster, and other primary headaches. After we took this main objective into consideration, three different neurologists were required to fill in the medical records of 850 patients into our web-based expert system hosted on our project web site. In the evaluation process, Artificial Immune Systems (AIS) were used as the classification algorithms. The AIS are classification algorithms that are inspired by the biological immune system mechanism that involves significant and distinct capabilities. These algorithms simulate the specialties of the immune system such as discrimination, learning, and the memorizing process in order to be used for classification, optimization, or pattern recognition. According to the results, the accuracy level of the classifier used in this study reached a success continuum ranging from 95% to 99%, except for the inconvenient one that yielded 71% accuracy. PMID:26075014
A MULTIRATE STOeRMER ALGORITHM FOR CLOSE ENCOUNTERS
Grazier, K. R.; Newman, W. I.; Sharp, P. W. E-mail: win@ucla.edu
2013-04-15
We present, analyze, and test a multirate Stoermer-based algorithm for integrating close encounters when performing N-body simulations of the Sun, planets, and a large number of test particles. The algorithm is intended primarily for accurate simulations of the outer solar system. The algorithm uses stepsizes H and h{sub i} , i = 1, ..., N{sub p} , where h{sub i} << H and N{sub p} is the number of planets. The stepsize H is used for the integration of the orbital motion of the Sun and planets at all times. H is also used as the stepsize for the integration of the orbital motion of test particles when they are not undergoing a close encounter. The stepsize h{sub i} is used to integrate the orbital motion of test particles during a close encounter with the ith planet. The position of the Sun and planets during a close encounter is calculated using Hermite interpolation. We tested the algorithm on two contrasting problems, and compared its performance with the existing method which uses the same stepsize for all bodies (this stepsize must be significantly smaller than H to ensure the close encounters are integrated accurately). Our tests show that the integration error for the new and existing methods are comparable when the stepsizes are chosen to minimize the error, and that for this choice of stepsizes the new method requires considerably less CPU time than the existing method.
QUEST: Eliminating Online Supervised Learning for Efficient Classification Algorithms
Zwartjes, Ardjan; Havinga, Paul J. M.; Smit, Gerard J. M.; Hurink, Johann L.
2016-01-01
In this work, we introduce QUEST (QUantile Estimation after Supervised Training), an adaptive classification algorithm for Wireless Sensor Networks (WSNs) that eliminates the necessity for online supervised learning. Online processing is important for many sensor network applications. Transmitting raw sensor data puts high demands on the battery, reducing network life time. By merely transmitting partial results or classifications based on the sampled data, the amount of traffic on the network can be significantly reduced. Such classifications can be made by learning based algorithms using sampled data. An important issue, however, is the training phase of these learning based algorithms. Training a deployed sensor network requires a lot of communication and an impractical amount of human involvement. QUEST is a hybrid algorithm that combines supervised learning in a controlled environment with unsupervised learning on the location of deployment. Using the SITEX02 dataset, we demonstrate that the presented solution works with a performance penalty of less than 10% in 90% of the tests. Under some circumstances, it even outperforms a network of classifiers completely trained with supervised learning. As a result, the need for on-site supervised learning and communication for training is completely eliminated by our solution. PMID:27706071
Synthesis of logic circuits with evolutionary algorithms
JONES,JAKE S.; DAVIDSON,GEORGE S.
2000-01-26
In the last decade there has been interest and research in the area of designing circuits with genetic algorithms, evolutionary algorithms, and genetic programming. However, the ability to design circuits of the size and complexity required by modern engineering design problems, simply by specifying required outputs for given inputs has as yet eluded researchers. This paper describes current research in the area of designing logic circuits using an evolutionary algorithm. The goal of the research is to improve the effectiveness of this method and make it a practical aid for design engineers. A novel method of implementing the algorithm is introduced, and results are presented for various multiprocessing systems. In addition to evolving standard arithmetic circuits, work in the area of evolving circuits that perform digital signal processing tasks is described.
Coagulation algorithms with size binning
NASA Technical Reports Server (NTRS)
Statton, David M.; Gans, Jason; Williams, Eric
1994-01-01
The Smoluchowski equation describes the time evolution of an aerosol particle size distribution due to aggregation or coagulation. Any algorithm for computerized solution of this equation requires a scheme for describing the continuum of aerosol particle sizes as a discrete set. One standard form of the Smoluchowski equation accomplishes this by restricting the particle sizes to integer multiples of a basic unit particle size (the monomer size). This can be inefficient when particle concentrations over a large range of particle sizes must be calculated. Two algorithms employing a geometric size binning convention are examined: the first assumes that the aerosol particle concentration as a function of size can be considered constant within each size bin; the second approximates the concentration as a linear function of particle size within each size bin. The output of each algorithm is compared to an analytical solution in a special case of the Smoluchowski equation for which an exact solution is known . The range of parameters more appropriate for each algorithm is examined.
Parallel Algorithms for Graph Optimization using Tree Decompositions
Sullivan, Blair D; Weerapurage, Dinesh P; Groer, Christopher S
2012-06-01
Although many $\\cal{NP}$-hard graph optimization problems can be solved in polynomial time on graphs of bounded tree-width, the adoption of these techniques into mainstream scientific computation has been limited due to the high memory requirements of the necessary dynamic programming tables and excessive runtimes of sequential implementations. This work addresses both challenges by proposing a set of new parallel algorithms for all steps of a tree decomposition-based approach to solve the maximum weighted independent set problem. A hybrid OpenMP/MPI implementation includes a highly scalable parallel dynamic programming algorithm leveraging the MADNESS task-based runtime, and computational results demonstrate scaling. This work enables a significant expansion of the scale of graphs on which exact solutions to maximum weighted independent set can be obtained, and forms a framework for solving additional graph optimization problems with similar techniques.
Combinatorial algorithm for counting small induced graphs and orbits
Hočevar, Tomaž; Demšar, Janez
2017-01-01
Graphlet analysis is an approach to network analysis that is particularly popular in bioinformatics. We show how to set up a system of linear equations that relate the orbit counts and can be used in an algorithm that is significantly faster than the existing approaches based on direct enumeration of graphlets. The approach presented in this paper presents a generalization of the currently fastest method for counting 5-node graphlets in bioinformatics. The algorithm requires existence of a vertex with certain properties; we show that such vertex exists for graphlets of arbitrary size, except for complete graphs and a cycle with four nodes, which are treated separately. Empirical analysis of running time agrees with the theoretical results. PMID:28182743
Use of synthetic data to test biometric algorithms
NASA Astrophysics Data System (ADS)
Murphy, Thomas M.; Broussard, Randy; Rakvic, Ryan; Ngo, Hau; Ives, Robert W.; Schultz, Robert; Aguayo, Joseph T.
2016-07-01
For digital imagery, face detection and identification are functions of great importance in wide-ranging applications, including full facial recognition systems. The development and evaluation of unique and existing face detection and face identification applications require a significant amount of data. Increased availability of such data volumes could benefit the formulation and advancement of many biometric algorithms. Here, the utility of using synthetically generated face data to evaluate facial biometry methodologies to a precision that would be unrealistic for a parametrically uncontrolled dataset, is demonstrated. Particular attention is given to similarity metrics, symmetry within and between recognition algorithms, discriminatory power and optimality of pan and/or tilt in reference images or libraries, susceptibilities to variations, identification confidence, meaningful identification mislabelings, sensitivity, specificity, and threshold values. The face identification results, in particular, could be generalized to address shortcomings in various applications and help to inform the design of future strategies.
Improved zerotree coding algorithm for wavelet image compression
NASA Astrophysics Data System (ADS)
Chen, Jun; Li, Yunsong; Wu, Chengke
2000-12-01
A listless minimum zerotree coding algorithm based on the fast lifting wavelet transform with lower memory requirement and higher compression performance is presented in this paper. Most state-of-the-art image compression techniques based on wavelet coefficients, such as EZW and SPIHT, exploit the dependency between the subbands in a wavelet transformed image. We propose a minimum zerotree of wavelet coefficients which exploits the dependency not only between the coarser and the finer subbands but also within the lowest frequency subband. And a ne listless significance map coding algorithm based on the minimum zerotree, using new flag maps and new scanning order different form Wen-Kuo Lin et al. LZC, is also proposed. A comparison reveals that the PSNR results of LMZC are higher than those of LZC, and the compression performance of LMZC outperforms that of SPIHT in terms of hard implementation.
A hierarchical algorithm for molecular similarity (H-FORMS).
Ramirez-Manzanares, Alonso; Peña, Joaquin; Azpiroz, Jon M; Merino, Gabriel
2015-07-15
A new hierarchical method to determine molecular similarity is introduced. The goal of this method is to detect if a pair of molecules has the same structure by estimating a rigid transformation that aligns the molecules and a correspondence function that matches their atoms. The algorithm firstly detect similarity based on the global spatial structure. If this analysis is not sufficient, the algorithm computes novel local structural rotation-invariant descriptors for the atom neighborhood and uses this information to match atoms. Two strategies (deterministic and stochastic) on the matching based alignment computation are tested. As a result, the atom-matching based on local similarity indexes decreases the number of testing trials and significantly reduces the dimensionality of the Hungarian assignation problem. The experiments on well-known datasets show that our proposal outperforms state-of-the-art methods in terms of the required computational time and accuracy.
NASA Astrophysics Data System (ADS)
Freiman, M.; Lamash, Y.; Gilboa, G.; Nickisch, H.; Prevrhal, S.; Schmitt, H.; Vembar, M.; Goshen, L.
2016-03-01
The determination of hemodynamic significance of coronary artery lesions from cardiac computed tomography angiography (CCTA) based on blood flow simulations has the potential to improve CCTA's specificity, thus resulting in improved clinical decision making. Accurate coronary lumen segmentation required for flow simulation is challenging due to several factors. Specifically, the partial-volume effect (PVE) in small-diameter lumina may result in overestimation of the lumen diameter that can lead to an erroneous hemodynamic significance assessment. In this work, we present a coronary artery segmentation algorithm tailored specifically for flow simulations by accounting for the PVE. Our algorithm detects lumen regions that may be subject to the PVE by analyzing the intensity values along the coronary centerline and integrates this information into a machine-learning based graph min-cut segmentation framework to obtain accurate coronary lumen segmentations. We demonstrate the improvement in hemodynamic significance assessment achieved by accounting for the PVE in the automatic segmentation of 91 coronary artery lesions from 85 patients. We compare hemodynamic significance assessments by means of fractional flow reserve (FFR) resulting from simulations on 3D models generated by our segmentation algorithm with and without accounting for the PVE. By accounting for the PVE we improved the area under the ROC curve for detecting hemodynamically significant CAD by 29% (N=91, 0.85 vs. 0.66, p<0.05, Delong's test) with invasive FFR threshold of 0.8 as the reference standard. Our algorithm has the potential to facilitate non-invasive hemodynamic significance assessment of coronary lesions.
A sensor node lossless compression algorithm for non-slowly varying data based on DMD transform
NASA Astrophysics Data System (ADS)
Ren, Xuejun; Liu, Jianping
2013-03-01
Efficient utilization of energy is a core area of research in wireless sensor networks. Data compression methods to reduce the number of bits to be transmitted by the communication module will significantly reduce the energy requirement and increase the lifetime of the sensor node. Based on the lifting scheme 2-point discrete cosine transform (DCT), this paper proposed a new reversible recursive algorithm named Difference-Median-Difference (DMD) transform for lossless data compression in sensor node. The DMD transform can significantly reduce the spatio-temporal correlations among sensor data and can smoothly run in resource limited sensor nodes. Through an entropy encoder, the results of DMD transform can be compressed more compactly based on their statistical characteristics to achieve compression. Compared with the typical lossless algorithms, the proposed algorithm indicated better compression ratios than others for non-slowly-varying data, despite a less computational effort.
Automated Antenna Design with Evolutionary Algorithms
NASA Technical Reports Server (NTRS)
Hornby, Gregory S.; Globus, Al; Linden, Derek S.; Lohn, Jason D.
2006-01-01
Current methods of designing and optimizing antennas by hand are time and labor intensive, and limit complexity. Evolutionary design techniques can overcome these limitations by searching the design space and automatically finding effective solutions. In recent years, evolutionary algorithms have shown great promise in finding practical solutions in large, poorly understood design spaces. In particular, spacecraft antenna design has proven tractable to evolutionary design techniques. Researchers have been investigating evolutionary antenna design and optimization since the early 1990s, and the field has grown in recent years as computer speed has increased and electromagnetic simulators have improved. Two requirements-compliant antennas, one for ST5 and another for TDRS-C, have been automatically designed by evolutionary algorithms. The ST5 antenna is slated to fly this year, and a TDRS-C phased array element has been fabricated and tested. Such automated evolutionary design is enabled by medium-to-high quality simulators and fast modern computers to evaluate computer-generated designs. Evolutionary algorithms automate cut-and-try engineering, substituting automated search though millions of potential designs for intelligent search by engineers through a much smaller number of designs. For evolutionary design, the engineer chooses the evolutionary technique, parameters and the basic form of the antenna, e.g., single wire for ST5 and crossed-element Yagi for TDRS-C. Evolutionary algorithms then search for optimal configurations in the space defined by the engineer. NASA's Space Technology 5 (ST5) mission will launch three small spacecraft to test innovative concepts and technologies. Advanced evolutionary algorithms were used to automatically design antennas for ST5. The combination of wide beamwidth for a circularly-polarized wave and wide impedance bandwidth made for a challenging antenna design problem. From past experience in designing wire antennas, we chose to
Internal labelling problem: an algorithmic procedure
NASA Astrophysics Data System (ADS)
Campoamor-Stursberg, Rutwig
2011-01-01
Combining the decomposition of Casimir operators induced by the embedding of a subalgebra into a semisimple Lie algebra with the properties of commutators of subgroup scalars, an analytical algorithm for the computation of missing label operators with the commutativity requirement is proposed. Two new criteria for subgroups scalars to commute are given. The algorithm is completed with a recursive method to construct orthonormal bases of states. As examples to illustrate the procedure, four labelling problems are explicitly studied.
Cellular interconnects optimization algorithm for optoelectronic single-instruction multiple data.
Hoanca, B; Sawchuk, A A
1998-02-10
We present a novel algorithm for designing optimal cellular interconnects (OCI's), which can significantly accelerate the communications among processors in single-instruction multiple-data machines with optoelectronic interconnections. We present the foundations of the OCI architecture and show that the optoelectronic OCI is the optimal topology for a space-invariant interconnect pattern. The OCI is optimal in achieving a minimum number of clock cycles per data shift for a given number of optoelectronic links. In addition, our algorithm for designing the OCI is deterministic, whereas previous designs required a trial-and-error procedure.
Complexity of the Quantum Adiabatic Algorithm
NASA Technical Reports Server (NTRS)
Hen, Itay
2013-01-01
The Quantum Adiabatic Algorithm (QAA) has been proposed as a mechanism for efficiently solving optimization problems on a quantum computer. Since adiabatic computation is analog in nature and does not require the design and use of quantum gates, it can be thought of as a simpler and perhaps more profound method for performing quantum computations that might also be easier to implement experimentally. While these features have generated substantial research in QAA, to date there is still a lack of solid evidence that the algorithm can outperform classical optimization algorithms.
Recursive algorithms for vector extrapolation methods
NASA Technical Reports Server (NTRS)
Ford, William F.; Sidi, Avram
1988-01-01
Three classes of recursion relations are devised for implementing some extrapolation methods for vector sequences. One class of recursion relations can be used to implement methods like the modified minimal polynomial extrapolation and the topological epsilon algorithm; another allows implementation of methods like minimal polynomial and reduced rank extrapolation; while the remaining class can be employed in the implementation of the vector E-algorithm. Operation counts and storage requirements for these methods are also discussed, and some related techniques for special applications are also presented. Included are methods for the rapid evaluations of the vector E-algorithm.
Analysis of dissection algorithms for vector computers
NASA Technical Reports Server (NTRS)
George, A.; Poole, W. G., Jr.; Voigt, R. G.
1978-01-01
Recently two dissection algorithms (one-way and incomplete nested dissection) have been developed for solving the sparse positive definite linear systems arising from n by n grid problems. Concurrently, vector computers (such as the CDC STAR-100 and TI ASC) have been developed for large scientific applications. An analysis of the use of dissection algorithms on vector computers dictates that vectors of maximum length be utilized thereby implying little or no dissection; on the other hand, minimizing operation counts suggest that considerable dissection be performed. In this paper we discuss the resolution of this conflict by minimizing the total time required by vectorized versions of the two algorithms.
Iterative phase retrieval algorithms. I: optimization.
Guo, Changliang; Liu, Shi; Sheridan, John T
2015-05-20
Two modified Gerchberg-Saxton (GS) iterative phase retrieval algorithms are proposed. The first we refer to as the spatial phase perturbation GS algorithm (SPP GSA). The second is a combined GS hybrid input-output algorithm (GS/HIOA). In this paper (Part I), it is demonstrated that the SPP GS and GS/HIO algorithms are both much better at avoiding stagnation during phase retrieval, allowing them to successfully locate superior solutions compared with either the GS or the HIO algorithms. The performances of the SPP GS and GS/HIO algorithms are also compared. Then, the error reduction (ER) algorithm is combined with the HIO algorithm (ER/HIOA) to retrieve the input object image and the phase, given only some knowledge of its extent and the amplitude in the Fourier domain. In Part II, the algorithms developed here are applied to carry out known plaintext and ciphertext attacks on amplitude encoding and phase encoding double random phase encryption systems. Significantly, ER/HIOA is then used to carry out a ciphertext-only attack on AE DRPE systems.
Fungi producing significant mycotoxins.
2012-01-01
Mycotoxins are secondary metabolites of microfungi that are known to cause sickness or death in humans or animals. Although many such toxic metabolites are known, it is generally agreed that only a few are significant in causing disease: aflatoxins, fumonisins, ochratoxin A, deoxynivalenol, zearalenone, and ergot alkaloids. These toxins are produced by just a few species from the common genera Aspergillus, Penicillium, Fusarium, and Claviceps. All Aspergillus and Penicillium species either are commensals, growing in crops without obvious signs of pathogenicity, or invade crops after harvest and produce toxins during drying and storage. In contrast, the important Fusarium and Claviceps species infect crops before harvest. The most important Aspergillus species, occurring in warmer climates, are A. flavus and A. parasiticus, which produce aflatoxins in maize, groundnuts, tree nuts, and, less frequently, other commodities. The main ochratoxin A producers, A. ochraceus and A. carbonarius, commonly occur in grapes, dried vine fruits, wine, and coffee. Penicillium verrucosum also produces ochratoxin A but occurs only in cool temperate climates, where it infects small grains. F. verticillioides is ubiquitous in maize, with an endophytic nature, and produces fumonisins, which are generally more prevalent when crops are under drought stress or suffer excessive insect damage. It has recently been shown that Aspergillus niger also produces fumonisins, and several commodities may be affected. F. graminearum, which is the major producer of deoxynivalenol and zearalenone, is pathogenic on maize, wheat, and barley and produces these toxins whenever it infects these grains before harvest. Also included is a short section on Claviceps purpurea, which produces sclerotia among the seeds in grasses, including wheat, barley, and triticale. The main thrust of the chapter contains information on the identification of these fungi and their morphological characteristics, as well as factors
40 CFR 1508.27 - Significantly.
Code of Federal Regulations, 2010 CFR
2010-07-01
... 40 Protection of Environment 32 2010-07-01 2010-07-01 false Significantly. 1508.27 Section 1508.27 Protection of Environment COUNCIL ON ENVIRONMENTAL QUALITY TERMINOLOGY AND INDEX § 1508.27 Significantly. Significantly as used in NEPA requires considerations of both context and intensity: (a) Context. This...
48 CFR 2110.7003 - Significant events.
Code of Federal Regulations, 2014 CFR
2014-10-01
... 48 Federal Acquisition Regulations System 6 2014-10-01 2014-10-01 false Significant events. 2110..., AND OTHER PURCHASE DESCRIPTIONS Contract Specifications 2110.7003 Significant events. The contractor is required to inform the contracting officer of all significant events....
48 CFR 2110.7003 - Significant events.
Code of Federal Regulations, 2013 CFR
2013-10-01
... 48 Federal Acquisition Regulations System 6 2013-10-01 2013-10-01 false Significant events. 2110..., AND OTHER PURCHASE DESCRIPTIONS Contract Specifications 2110.7003 Significant events. The contractor is required to inform the contracting officer of all significant events....
48 CFR 2110.7003 - Significant events.
Code of Federal Regulations, 2011 CFR
2011-10-01
... 48 Federal Acquisition Regulations System 6 2011-10-01 2011-10-01 false Significant events. 2110..., AND OTHER PURCHASE DESCRIPTIONS Contract Specifications 2110.7003 Significant events. The contractor is required to inform the contracting officer of all significant events....
48 CFR 2110.7003 - Significant events.
Code of Federal Regulations, 2010 CFR
2010-10-01
... 48 Federal Acquisition Regulations System 6 2010-10-01 2010-10-01 true Significant events. 2110..., AND OTHER PURCHASE DESCRIPTIONS Contract Specifications 2110.7003 Significant events. The contractor is required to inform the contracting officer of all significant events....
48 CFR 2110.7003 - Significant events.
Code of Federal Regulations, 2012 CFR
2012-10-01
... 48 Federal Acquisition Regulations System 6 2012-10-01 2012-10-01 false Significant events. 2110..., AND OTHER PURCHASE DESCRIPTIONS Contract Specifications 2110.7003 Significant events. The contractor is required to inform the contracting officer of all significant events....
Optimal algorithm for fluorescence suppression of modulated Raman spectroscopy.
Mazilu, Michael; De Luca, Anna Chiara; Riches, Andrew; Herrington, C Simon; Dholakia, Kishan
2010-05-24
Raman spectroscopy permits probing of the molecular and chemical properties of the analyzed sample. However, its applicability has been seriously limited to specific applications by the presence of a strong fluorescence background. In our recent paper [Anal. Chem. 82, 738 (2010)], we reported a new modulation method for separating Raman scattering from fluorescence. By continuously changing the excitation wavelength, we demonstrated that it is possible to continuously shift the Raman peaks while the fluorescence background remains essentially constant. In this way, our method allows separation of the modulated Raman peaks from the static fluorescence background with important advantages when compared to previous work using only two [Appl. Spectrosc. 46, 707 (1992)] or a few shifted excitation wavelengths [Opt. Express 16, 10975 (2008)]. The purpose of the present work is to demonstrate a significant improvement of the efficacy of the modulated method by using different processing algorithms. The merits of each algorithm (Standard Deviation analysis, Fourier Filtering, Least-Squares fitting and Principal Component Analysis) are discussed and the dependence of the modulated Raman signal on several parameters, such as the amplitude and the modulation rate of the Raman excitation wavelength, is analyzed. The results of both simulation and experimental data demonstrate that Principal Component Analysis is the best processing algorithm. It improves the signal-to-noise ratio in the treated Raman spectra, reducing required acquisition times. Additionally, this approach does not require any synchronization procedure, reduces user intervention and renders it suitable for real-time applications.
Novel fracturing algorithm to reduce shot count for curvy shape
NASA Astrophysics Data System (ADS)
Tao, Takuya; Takahashi, Nobuyasu; Hamaji, Masakazu
2013-09-01
The increasing complexity of RET solutions has increased the shot count for advanced photomasks. In particular, the introduction of the inverse lithography technique (ILT) brings a significant increase in mask complexity and conventional fracturing algorithms generate much more shots because they are not optimized for curvilinear shapes. Several methods have been proposed to reduce shot count for ILT photomasks. One of the stronger approaches is the model-based fracturing, which utilizes precise dose control, shot overlaps and many other techniques. However, it requires much more computation resource and upgrades to the EB mask writer to support user-level dose modulation and shot overlaps. The algorithm proposed here is not model-based but based on geometry processing, the combination of shape extraction and direct manhattanization. Because it is not based on physical simulation, its processing speed is as fast as a conventional fracturing algorithm. It can generate both non-overlapping shots and overlapping shots and does not require user-level dose modulation. As the result, it can be utilized for the current standard VSB mask writers.
Requirements for multidisciplinary design of aerospace vehicles on high performance computers
NASA Technical Reports Server (NTRS)
Voigt, Robert G.
1989-01-01
The design of aerospace vehicles is becoming increasingly complex as the various contributing disciplines and physical components become more tightly coupled. This coupling leads to computational problems that will be tractable only if significant advances in high performance computing systems are made. Some of the modeling, algorithmic and software requirements generated by the design problem are discussed.
Cao, Jianfang; Cui, Hongyan; Shi, Hao; Jiao, Lijuan
2016-01-01
A back-propagation (BP) neural network can solve complicated random nonlinear mapping problems; therefore, it can be applied to a wide range of problems. However, as the sample size increases, the time required to train BP neural networks becomes lengthy. Moreover, the classification accuracy decreases as well. To improve the classification accuracy and runtime efficiency of the BP neural network algorithm, we proposed a parallel design and realization method for a particle swarm optimization (PSO)-optimized BP neural network based on MapReduce on the Hadoop platform using both the PSO algorithm and a parallel design. The PSO algorithm was used to optimize the BP neural network's initial weights and thresholds and improve the accuracy of the classification algorithm. The MapReduce parallel programming model was utilized to achieve parallel processing of the BP algorithm, thereby solving the problems of hardware and communication overhead when the BP neural network addresses big data. Datasets on 5 different scales were constructed using the scene image library from the SUN Database. The classification accuracy of the parallel PSO-BP neural network algorithm is approximately 92%, and the system efficiency is approximately 0.85, which presents obvious advantages when processing big data. The algorithm proposed in this study demonstrated both higher classification accuracy and improved time efficiency, which represents a significant improvement obtained from applying parallel processing to an intelligent algorithm on big data.
Cao, Jianfang; Cui, Hongyan; Shi, Hao; Jiao, Lijuan
2016-01-01
A back-propagation (BP) neural network can solve complicated random nonlinear mapping problems; therefore, it can be applied to a wide range of problems. However, as the sample size increases, the time required to train BP neural networks becomes lengthy. Moreover, the classification accuracy decreases as well. To improve the classification accuracy and runtime efficiency of the BP neural network algorithm, we proposed a parallel design and realization method for a particle swarm optimization (PSO)-optimized BP neural network based on MapReduce on the Hadoop platform using both the PSO algorithm and a parallel design. The PSO algorithm was used to optimize the BP neural network’s initial weights and thresholds and improve the accuracy of the classification algorithm. The MapReduce parallel programming model was utilized to achieve parallel processing of the BP algorithm, thereby solving the problems of hardware and communication overhead when the BP neural network addresses big data. Datasets on 5 different scales were constructed using the scene image library from the SUN Database. The classification accuracy of the parallel PSO-BP neural network algorithm is approximately 92%, and the system efficiency is approximately 0.85, which presents obvious advantages when processing big data. The algorithm proposed in this study demonstrated both higher classification accuracy and improved time efficiency, which represents a significant improvement obtained from applying parallel processing to an intelligent algorithm on big data. PMID:27304987
NASA Astrophysics Data System (ADS)
Habarulema, J. B.; McKinnell, L.-A.
2012-05-01
In this work, results obtained by investigating the application of different neural network backpropagation training algorithms are presented. This was done to assess the performance accuracy of each training algorithm in total electron content (TEC) estimations using identical datasets in models development and verification processes. Investigated training algorithms are standard backpropagation (SBP), backpropagation with weight delay (BPWD), backpropagation with momentum (BPM) term, backpropagation with chunkwise weight update (BPC) and backpropagation for batch (BPB) training. These five algorithms are inbuilt functions within the Stuttgart Neural Network Simulator (SNNS) and the main objective was to find out the training algorithm that generates the minimum error between the TEC derived from Global Positioning System (GPS) observations and the modelled TEC data. Another investigated algorithm is the MatLab based Levenberg-Marquardt backpropagation (L-MBP), which achieves convergence after the least number of iterations during training. In this paper, neural network (NN) models were developed using hourly TEC data (for 8 years: 2000-2007) derived from GPS observations over a receiver station located at Sutherland (SUTH) (32.38° S, 20.81° E), South Africa. Verification of the NN models for all algorithms considered was performed on both "seen" and "unseen" data. Hourly TEC values over SUTH for 2003 formed the "seen" dataset. The "unseen" dataset consisted of hourly TEC data for 2002 and 2008 over Cape Town (CPTN) (33.95° S, 18.47° E) and SUTH, respectively. The models' verification showed that all algorithms investigated provide comparable results statistically, but differ significantly in terms of time required to achieve convergence during input-output data training/learning. This paper therefore provides a guide to neural network users for choosing appropriate algorithms based on the availability of computation capabilities used for research.
A fast meteor detection algorithm
NASA Astrophysics Data System (ADS)
Gural, P.
2016-01-01
A low latency meteor detection algorithm for use with fast steering mirrors had been previously developed to track and telescopically follow meteors in real-time (Gural, 2007). It has been rewritten as a generic clustering and tracking software module for meteor detection that meets both the demanding throughput requirements of a Raspberry Pi while also maintaining a high probability of detection. The software interface is generalized to work with various forms of front-end video pre-processing approaches and provides a rich product set of parameterized line detection metrics. Discussion will include the Maximum Temporal Pixel (MTP) compression technique as a fast thresholding option for feeding the detection module, the detection algorithm trade for maximum processing throughput, details on the clustering and tracking methodology, processing products, performance metrics, and a general interface description.
Algorithm for Autonomous Landing
NASA Technical Reports Server (NTRS)
Kuwata, Yoshiaki
2011-01-01
Because of their small size, high maneuverability, and easy deployment, micro aerial vehicles (MAVs) are used for a wide variety of both civilian and military missions. One of their current drawbacks is the vast array of sensors (such as GPS, altimeter, radar, and the like) required to make a landing. Due to the MAV s small payload size, this is a major concern. Replacing the imaging sensors with a single monocular camera is sufficient to land a MAV. By applying optical flow algorithms to images obtained from the camera, time-to-collision can be measured. This is a measurement of position and velocity (but not of absolute distance), and can avoid obstacles as well as facilitate a landing on a flat surface given a set of initial conditions. The key to this approach is to calculate time-to-collision based on some image on the ground. By holding the angular velocity constant, horizontal speed decreases linearly with the height, resulting in a smooth landing. Mathematical proofs show that even with actuator saturation or modeling/ measurement uncertainties, MAVs can land safely. Landings of this nature may have a higher velocity than is desirable, but this can be compensated for by a cushioning or dampening system, or by using a system of legs to grab onto a surface. Such a monocular camera system can increase vehicle payload size (or correspondingly reduce vehicle size), increase speed of descent, and guarantee a safe landing by directly correlating speed to height from the ground.
License plate detection algorithm
NASA Astrophysics Data System (ADS)
Broitman, Michael; Klopovsky, Yuri; Silinskis, Normunds
2013-12-01
A novel algorithm for vehicle license plates localization is proposed. The algorithm is based on pixel intensity transition gradient analysis. Near to 2500 natural-scene gray-level vehicle images of different backgrounds and ambient illumination was tested. The best set of algorithm's parameters produces detection rate up to 0.94. Taking into account abnormal camera location during our tests and therefore geometrical distortion and troubles from trees this result could be considered as passable. Correlation between source data, such as license Plate dimensions and texture, cameras location and others, and parameters of algorithm were also defined.
Distributed Minimum Hop Algorithms
1982-01-01
acknowledgement), node d starts iteration i+1, and otherwise the algorithm terminates. A detailed description of the algorithm is given in pidgin algol...precise behavior of the algorithm under these circumstances is described by the pidgin algol program in the appendix which is executed by each node. The...l) < N!(2) for each neighbor j, and thus by induction,J -1 N!(2-1) < n-i + (Z-1) + N!(Z-1), completing the proof. Algorithm Dl in Pidgin Algol It is
Duval, Céline; de Tayrac, Marie; Michaud, Karine; Cabillic, Florian; Paquet, Claudie; Gould, Peter Vincent; Saikali, Stéphan
2015-01-01
Objective To propose a new algorithm facilitating automated analysis of 1p and 19q status by FISH technique in oligodendroglial tumors with software packages available in the majority of institutions using this technique. Methods We documented all green/red (G/R) probe signal combinations in a retrospective series of 53 oligodendroglial tumors according to literature guidelines (Algorithm 1) and selected only the most significant combinations for a new algorithm (Algorithm 2). This second algorithm was then validated on a prospective internal series of 45 oligodendroglial tumors and on an external series of 36 gliomas. Results Algorithm 2 utilizes 24 G/R combinations which represent less than 40% of combinations observed with Algorithm 1. The new algorithm excludes some common G/R combinations (1/1, 3/2) and redefines the place of others (defining 1/2 as compatible with normal and 3/3, 4/4 and 5/5 as compatible with imbalanced chromosomal status). The new algorithm uses the combination + ratio method of signal probe analysis to give the best concordance between manual and automated analysis on samples of 100 tumor cells (91% concordance for 1p and 89% concordance for 19q) and full concordance on samples of 200 tumor cells. This highlights the value of automated analysis as a means to identify cases in which a larger number of tumor cells should be studied by manual analysis. Validation of this algorithm on a second series from another institution showed a satisfactory concordance (89%, κ = 0.8). Conclusion Our algorithm can be easily implemented on all existing FISH analysis software platforms and should facilitate multicentric evaluation and standardization of 1p/19q assessment in gliomas with reduction of the professional and technical time required. PMID:26135922
Algorithm Development Library for Environmental Satellite Missions
NASA Astrophysics Data System (ADS)
Smith, D. C.; Grant, K. D.; Miller, S. W.; Jamilkowski, M. L.
2012-12-01
science will need to migrate into the operational system. In addition, as new techniques are found to improve, supplement, or replace existing products, these changes will also require implementation into the operational system. In the past, operationalizing science algorithms and integrating them into active systems often required months of work. In order to significantly shorten the time and effort required for this activity, Raytheon has developed the Algorithm Development Library (ADL). The ADL enables scientist and researchers to develop algorithms on their own platforms, and provide these to Raytheon in a form that can be rapidly integrated directly into the operational baseline. As the JPSS CGS is a multi-mission ground system, algorithms are not restricted to Suomi NPP or JPSS missions. The ADL provides a development environment that any environmental remote sensing mission scientist can use to create algorithms that will plug into a JPSS CGS instantiation. This paper describes the ADL and how scientists and researchers can use it in their own environments.
Passive microwave algorithm development and evaluation
NASA Technical Reports Server (NTRS)
Petty, Grant W.
1995-01-01
The scientific objectives of this grant are: (1) thoroughly evaluate, both theoretically and empirically, all available Special Sensor Microwave Imager (SSM/I) retrieval algorithms for column water vapor, column liquid water, and surface wind speed; (2) where both appropriate and feasible, develop, validate, and document satellite passive microwave retrieval algorithms that offer significantly improved performance compared with currently available algorithms; and (3) refine and validate a novel physical inversion scheme for retrieving rain rate over the ocean. This report summarizes work accomplished or in progress during the first year of a three year grant. The emphasis during the first year has been on the validation and refinement of the rain rate algorithm published by Petty and on the analysis of independent data sets that can be used to help evaluate the performance of rain rate algorithms over remote areas of the ocean. Two articles in the area of global oceanic precipitation are attached.
Algorithms for radio networks with dynamic topology
NASA Astrophysics Data System (ADS)
Shacham, Nachum; Ogier, Richard; Rutenburg, Vladislav V.; Garcia-Luna-Aceves, Jose
1991-08-01
The objective of this project was the development of advanced algorithms and protocols that efficiently use network resources to provide optimal or nearly optimal performance in future communication networks with highly dynamic topologies and subject to frequent link failures. As reflected by this report, we have achieved our objective and have significantly advanced the state-of-the-art in this area. The research topics of the papers summarized include the following: efficient distributed algorithms for computing shortest pairs of disjoint paths; minimum-expected-delay alternate routing algorithms for highly dynamic unreliable networks; algorithms for loop-free routing; multipoint communication by hierarchically encoded data; efficient algorithms for extracting the maximum information from event-driven topology updates; methods for the neural network solution of link scheduling and other difficult problems arising in communication networks; and methods for robust routing in networks subject to sophisticated attacks.
Optimal reservoir operation policies using novel nested algorithms
NASA Astrophysics Data System (ADS)
Delipetrev, Blagoj; Jonoski, Andreja; Solomatine, Dimitri
2015-04-01
Historically, the two most widely practiced methods for optimal reservoir operation have been dynamic programming (DP) and stochastic dynamic programming (SDP). These two methods suffer from the so called "dual curse" which prevents them to be used in reasonably complex water systems. The first one is the "curse of dimensionality" that denotes an exponential growth of the computational complexity with the state - decision space dimension. The second one is the "curse of modelling" that requires an explicit model of each component of the water system to anticipate the effect of each system's transition. We address the problem of optimal reservoir operation concerning multiple objectives that are related to 1) reservoir releases to satisfy several downstream users competing for water with dynamically varying demands, 2) deviations from the target minimum and maximum reservoir water levels and 3) hydropower production that is a combination of the reservoir water level and the reservoir releases. Addressing such a problem with classical methods (DP and SDP) requires a reasonably high level of discretization of the reservoir storage volume, which in combination with the required releases discretization for meeting the demands of downstream users leads to computationally expensive formulations and causes the curse of dimensionality. We present a novel approach, named "nested" that is implemented in DP, SDP and reinforcement learning (RL) and correspondingly three new algorithms are developed named nested DP (nDP), nested SDP (nSDP) and nested RL (nRL). The nested algorithms are composed from two algorithms: 1) DP, SDP or RL and 2) nested optimization algorithm. Depending on the way we formulate the objective function related to deficits in the allocation problem in the nested optimization, two methods are implemented: 1) Simplex for linear allocation problems, and 2) quadratic Knapsack method in the case of nonlinear problems. The novel idea is to include the nested
A genetic algorithm for solving supply chain network design model
NASA Astrophysics Data System (ADS)
Firoozi, Z.; Ismail, N.; Ariafar, S. H.; Tang, S. H.; Ariffin, M. K. M. A.
2013-09-01
Network design is by nature costly and optimization models play significant role in reducing the unnecessary cost components of a distribution network. This study proposes a genetic algorithm to solve a distribution network design model. The structure of the chromosome in the proposed algorithm is defined in a novel way that in addition to producing feasible solutions, it also reduces the computational complexity of the algorithm. Computational results are presented to show the algorithm performance.
Advancements to the planogram frequency–distance rebinning algorithm
Champley, Kyle M; Raylman, Raymond R; Kinahan, Paul E
2010-01-01
In this paper we consider the task of image reconstruction in positron emission tomography (PET) with the planogram frequency–distance rebinning (PFDR) algorithm. The PFDR algorithm is a rebinning algorithm for PET systems with panel detectors. The algorithm is derived in the planogram coordinate system which is a native data format for PET systems with panel detectors. A rebinning algorithm averages over the redundant four-dimensional set of PET data to produce a three-dimensional set of data. Images can be reconstructed from this rebinned three-dimensional set of data. This process enables one to reconstruct PET images more quickly than reconstructing directly from the four-dimensional PET data. The PFDR algorithm is an approximate rebinning algorithm. We show that implementing the PFDR algorithm followed by the (ramp) filtered backprojection (FBP) algorithm in linogram coordinates from multiple views reconstructs a filtered version of our image. We develop an explicit formula for this filter which can be used to achieve exact reconstruction by means of a modified FBP algorithm applied to the stack of rebinned linograms and can also be used to quantify the errors introduced by the PFDR algorithm. This filter is similar to the filter in the planogram filtered backprojection algorithm derived by Brasse et al. The planogram filtered backprojection and exact reconstruction with the PFDR algorithm require complete projections which can be completed with a reprojection algorithm. The PFDR algorithm is similar to the rebinning algorithm developed by Kao et al. By expressing the PFDR algorithm in detector coordinates, we provide a comparative analysis between the two algorithms. Numerical experiments using both simulated data and measured data from a positron emission mammography/tomography (PEM/PET) system are performed. Images are reconstructed by PFDR+FBP (PFDR followed by 2D FBP reconstruction), PFDRX (PFDR followed by the modified FBP algorithm for exact
Combining ptychographical algorithms with the Hybrid Input-Output (HIO) algorithm.
Konijnenberg, A P; Coene, W M J; Pereira, S F; Urbach, H P
2016-12-01
In this article we combine the well-known Ptychographical Iterative Engine (PIE) with the Hybrid Input-Output (HIO) algorithm. The important insight is that the HIO feedback function should be kept strictly separate from the reconstructed object, which is done by introducing a separate feedback function per probe position. We have also combined HIO with floating PIE (fPIE) and extended PIE (ePIE). Simulations indicate that the combined algorithm performs significantly better in many situations. Although we have limited our research to a combination with HIO, the same insight can be used to combine ptychographical algorithms with any phase retrieval algorithm that uses a feedback function.
Novel biomedical tetrahedral mesh methods: algorithms and applications
NASA Astrophysics Data System (ADS)
Yu, Xiao; Jin, Yanfeng; Chen, Weitao; Huang, Pengfei; Gu, Lixu
2007-12-01
Tetrahedral mesh generation algorithm, as a prerequisite of many soft tissue simulation methods, becomes very important in the virtual surgery programs because of the real-time requirement. Aiming to speed up the computation in the simulation, we propose a revised Delaunay algorithm which makes a good balance of quality of tetrahedra, boundary preservation and time complexity, with many improved methods. Another mesh algorithm named Space-Disassembling is also presented in this paper, and a comparison of Space-Disassembling, traditional Delaunay algorithm and the revised Delaunay algorithm is processed based on clinical soft-tissue simulation projects, including craniofacial plastic surgery and breast reconstruction plastic surgery.
Algorithm That Synthesizes Other Algorithms for Hashing
NASA Technical Reports Server (NTRS)
James, Mark
2010-01-01
An algorithm that includes a collection of several subalgorithms has been devised as a means of synthesizing still other algorithms (which could include computer code) that utilize hashing to determine whether an element (typically, a number or other datum) is a member of a set (typically, a list of numbers). Each subalgorithm synthesizes an algorithm (e.g., a block of code) that maps a static set of key hashes to a somewhat linear monotonically increasing sequence of integers. The goal in formulating this mapping is to cause the length of the sequence thus generated to be as close as practicable to the original length of the set and thus to minimize gaps between the elements. The advantage of the approach embodied in this algorithm is that it completely avoids the traditional approach of hash-key look-ups that involve either secondary hash generation and look-up or further searching of a hash table for a desired key in the event of collisions. This algorithm guarantees that it will never be necessary to perform a search or to generate a secondary key in order to determine whether an element is a member of a set. This algorithm further guarantees that any algorithm that it synthesizes can be executed in constant time. To enforce these guarantees, the subalgorithms are formulated to employ a set of techniques, each of which works very effectively covering a certain class of hash-key values. These subalgorithms are of two types, summarized as follows: Given a list of numbers, try to find one or more solutions in which, if each number is shifted to the right by a constant number of bits and then masked with a rotating mask that isolates a set of bits, a unique number is thereby generated. In a variant of the foregoing procedure, omit the masking. Try various combinations of shifting, masking, and/or offsets until the solutions are found. From the set of solutions, select the one that provides the greatest compression for the representation and is executable in the
Protein-fold recognition using an improved single-source K diverse shortest paths algorithm.
Lhota, John; Xie, Lei
2016-04-01
Protein structure prediction, when construed as a fold recognition problem, is one of the most important applications of similarity search in bioinformatics. A new protein-fold recognition method is reported which combines a single-source K diverse shortest path (SSKDSP) algorithm with Enrichment of Network Topological Similarity (ENTS) algorithm to search a graphic feature space generated using sequence similarity and structural similarity metrics. A modified, more efficient SSKDSP algorithm is developed to improve the performance of graph searching. The new implementation of the SSKDSP algorithm empirically requires 82% less memory and 61% less time than the current implementation, allowing for the analysis of larger, denser graphs. Furthermore, the statistical significance of fold ranking generated from SSKDSP is assessed using ENTS. The reported ENTS-SSKDSP algorithm outperforms original ENTS that uses random walk with restart for the graph search as well as other state-of-the-art protein structure prediction algorithms HHSearch and Sparks-X, as evaluated by a benchmark of 600 query proteins. The reported methods may easily be extended to other similarity search problems in bioinformatics and chemoinformatics. The SSKDSP software is available at http://compsci.hunter.cuny.edu/~leixie/sskdsp.html.
NASA Astrophysics Data System (ADS)
Sekihara, Kensuke; Kawabata, Yuya; Ushio, Shuta; Sumiya, Satoshi; Kawabata, Shigenori; Adachi, Yoshiaki; Nagarajan, Srikantan S.
2016-06-01
Objective. In functional electrophysiological imaging, signals are often contaminated by interference that can be of considerable magnitude compared to the signals of interest. This paper proposes a novel algorithm for removing such interferences that does not require separate noise measurements. Approach. The algorithm is based on a dual definition of the signal subspace in the spatial- and time-domains. Since the algorithm makes use of this duality, it is named the dual signal subspace projection (DSSP). The DSSP algorithm first projects the columns of the measured data matrix onto the inside and outside of the spatial-domain signal subspace, creating a set of two preprocessed data matrices. The intersection of the row spans of these two matrices is estimated as the time-domain interference subspace. The original data matrix is projected onto the subspace that is orthogonal to this interference subspace. Main results. The DSSP algorithm is validated by using the computer simulation, and using two sets of real biomagnetic data: spinal cord evoked field data measured from a healthy volunteer and magnetoencephalography data from a patient with a vagus nerve stimulator. Significance. The proposed DSSP algorithm is effective for removing overlapped interference in a wide variety of biomagnetic measurements.
New image compression algorithm based on improved reversible biorthogonal integer wavelet transform
NASA Astrophysics Data System (ADS)
Zhang, Libao; Yu, Xianchuan
2012-10-01
The low computational complexity and high coding efficiency are the most significant requirements for image compression and transmission. Reversible biorthogonal integer wavelet transform (RB-IWT) supports the low computational complexity by lifting scheme (LS) and allows both lossy and lossless decoding using a single bitstream. However, RB-IWT degrades the performances and peak signal noise ratio (PSNR) of the image coding for image compression. In this paper, a new IWT-based compression scheme based on optimal RB-IWT and improved SPECK is presented. In this new algorithm, the scaling parameter of each subband is chosen for optimizing the transform coefficient. During coding, all image coefficients are encoding using simple, efficient quadtree partitioning method. This scheme is similar to the SPECK, but the new method uses a single quadtree partitioning instead of set partitioning and octave band partitioning of original SPECK, which reduces the coding complexity. Experiment results show that the new algorithm not only obtains low computational complexity, but also provides the peak signal-noise ratio (PSNR) performance of lossy coding to be comparable to the SPIHT algorithm using RB-IWT filters, and better than the SPECK algorithm. Additionally, the new algorithm supports both efficiently lossy and lossless compression using a single bitstream. This presented algorithm is valuable for future remote sensing image compression.
NASA Astrophysics Data System (ADS)
Yueh, Simon; Tang, Wenqing; Fore, Alexander; Hayashi, Akiko; Song, Yuhe T.; Lagerloef, Gary
2014-08-01
This paper describes the updated Combined Active-Passive (CAP) retrieval algorithm for simultaneous retrieval of surface salinity and wind from Aquarius' brightness temperature and radar backscatter. Unlike the algorithm developed by Remote Sensing Systems (RSS), implemented in the Aquarius Data Processing System (ADPS) to produce Aquarius standard products, the Jet Propulsion Laboratory's CAP algorithm does not require monthly climatology SSS maps for the salinity retrieval. Furthermore, the ADPS-RSS algorithm fully uses the National Center for Environmental Predictions (NCEP) wind for data correction, while the CAP algorithm uses the NCEP wind only as a constraint. The major updates to the CAP algorithm include the galactic reflection correction, Faraday rotation, Antenna Pattern Correction, and geophysical model functions of wind or wave impacts. Recognizing the limitation of geometric optics scattering, we improve the modeling of the reflection of galactic radiation; the results are better salinity accuracy and significantly reduced ascending-descending bias. We assess the accuracy of CAP's salinity by comparison with ARGO monthly gridded salinity products provided by the Asia-Pacific Data-Research Center (APDRC) and Japan Agency for Marine-Earth Science and Technology (JAMSTEC). The RMS differences between Aquarius CAP and APDRC's or JAMSTEC's ARGO salinities are less than 0.2 psu for most parts of the ocean, except for the regions in the Intertropical Convergence Zone, near the outflow of major rivers and at high latitudes.
NASA Astrophysics Data System (ADS)
Kourakos, George; Mantoglou, Aristotelis
2013-02-01
SummaryThe demand for fresh water in coastal areas and islands can be very high due to increased local needs and tourism. A multi-objective optimization methodology is developed, involving minimization of economic and environmental costs while satisfying water demand. The methodology considers desalinization of pumped water and injection of treated water into the aquifer. Variable density aquifer models are computationally intractable when integrated in optimization algorithms. In order to alleviate this problem, a multi-objective optimization algorithm is developed combining surrogate models based on Modular Neural Networks [MOSA(MNNs)]. The surrogate models are trained adaptively during optimization based on a genetic algorithm. In the crossover step, each pair of parents generates a pool of offspring which are evaluated using the fast surrogate model. Then, the most promising offspring are evaluated using the exact numerical model. This procedure eliminates errors in Pareto solution due to imprecise predictions of the surrogate model. The method has important advancements compared to previous methods such as precise evaluation of the Pareto set and alleviation of propagation of errors due to surrogate model approximations. The method is applied to an aquifer in the Greek island of Santorini. The results show that the new MOSA(MNN) algorithm offers significant reduction in computational time compared to previous methods (in the case study it requires only 5% of the time required by other methods). Further, the Pareto solution is better than the solution obtained by alternative algorithms.
A fast rank-reduction algorithm for three-dimensional seismic data interpolation
NASA Astrophysics Data System (ADS)
Jia, Yongna; Yu, Siwei; Liu, Lina; Ma, Jianwei
2016-09-01
Rank-reduction methods have been successfully used for seismic data interpolation and noise attenuation. However, highly intense computation is required for singular value decomposition (SVD) in most rank-reduction methods. In this paper, we propose a simple yet efficient interpolation algorithm, which is based on the Hankel matrix, for randomly missing traces. Following the multichannel singular spectrum analysis (MSSA) technique, we first transform the seismic data into a low-rank block Hankel matrix for each frequency slice. Then, a fast orthogonal rank-one matrix pursuit (OR1MP) algorithm is employed to minimize the low-rank constraint of the block Hankel matrix. In the new algorithm, only the left and right top singular vectors are needed to be computed, thereby, avoiding the complexity of computation required for SVD. Thus, we improve the calculation efficiency significantly. Finally, we anti-average the rank-reduction block Hankel matrix and obtain the reconstructed data in the frequency domain. Numerical experiments on 3D seismic data show that the proposed interpolation algorithm provides much better performance than the traditional MSSA algorithm in computational speed, especially for large-scale data processing.
GAMPMS: Genetic algorithm managed peptide mutant screening.
Long, Thomas; McDougal, Owen M; Andersen, Tim
2015-06-30
The prominence of endogenous peptide ligands targeted to receptors makes peptides with the desired binding activity good molecular scaffolds for drug development. Minor modifications to a peptide's primary sequence can significantly alter its binding properties with a receptor, and screening collections of peptide mutants is a useful technique for probing the receptor-ligand binding domain. Unfortunately, the combinatorial growth of such collections can limit the number of mutations which can be explored using structure-based molecular docking techniques. Genetic algorithm managed peptide mutant screening (GAMPMS) uses a genetic algorithm to conduct a heuristic search of the peptide's mutation space for peptides with optimal binding activity, significantly reducing the computational requirements of the virtual screening. The GAMPMS procedure was implemented and used to explore the binding domain of the nicotinic acetylcholine receptor (nAChR) α3β2-isoform with a library of 64,000 α-conotoxin (α-CTx) MII peptide mutants. To assess GAMPMS's performance, it was compared with a virtual screening procedure that used AutoDock to predict the binding affinity of each of the α-CTx MII peptide mutants with the α3β2-nAChR. The GAMPMS implementation performed AutoDock simulations for as few as 1140 of the 64,000 α-CTx MII peptide mutants and could consistently identify a set of 10 peptides with an aggregated binding energy that was at least 98% of the aggregated binding energy of the 10 top peptides from the exhaustive AutoDock screening.
Social significance of community structure: Statistical view
NASA Astrophysics Data System (ADS)
Li, Hui-Jia; Daniels, Jasmine J.
2015-01-01
Community structure analysis is a powerful tool for social networks that can simplify their topological and functional analysis considerably. However, since community detection methods have random factors and real social networks obtained from complex systems always contain error edges, evaluating the significance of a partitioned community structure is an urgent and important question. In this paper, integrating the specific characteristics of real society, we present a framework to analyze the significance of a social community. The dynamics of social interactions are modeled by identifying social leaders and corresponding hierarchical structures. Instead of a direct comparison with the average outcome of a random model, we compute the similarity of a given node with the leader by the number of common neighbors. To determine the membership vector, an efficient community detection algorithm is proposed based on the position of the nodes and their corresponding leaders. Then, using a log-likelihood score, the tightness of the community can be derived. Based on the distribution of community tightness, we establish a connection between p -value theory and network analysis, and then we obtain a significance measure of statistical form . Finally, the framework is applied to both benchmark networks and real social networks. Experimental results show that our work can be used in many fields, such as determining the optimal number of communities, analyzing the social significance of a given community, comparing the performance among various algorithms, etc.
Social significance of community structure: statistical view.
Li, Hui-Jia; Daniels, Jasmine J
2015-01-01
Community structure analysis is a powerful tool for social networks that can simplify their topological and functional analysis considerably. However, since community detection methods have random factors and real social networks obtained from complex systems always contain error edges, evaluating the significance of a partitioned community structure is an urgent and important question. In this paper, integrating the specific characteristics of real society, we present a framework to analyze the significance of a social community. The dynamics of social interactions are modeled by identifying social leaders and corresponding hierarchical structures. Instead of a direct comparison with the average outcome of a random model, we compute the similarity of a given node with the leader by the number of common neighbors. To determine the membership vector, an efficient community detection algorithm is proposed based on the position of the nodes and their corresponding leaders. Then, using a log-likelihood score, the tightness of the community can be derived. Based on the distribution of community tightness, we establish a connection between p-value theory and network analysis, and then we obtain a significance measure of statistical form . Finally, the framework is applied to both benchmark networks and real social networks. Experimental results show that our work can be used in many fields, such as determining the optimal number of communities, analyzing the social significance of a given community, comparing the performance among various algorithms, etc.
Transitional Division Algorithms.
ERIC Educational Resources Information Center
Laing, Robert A.; Meyer, Ruth Ann
1982-01-01
A survey of general mathematics students whose teachers were taking an inservice workshop revealed that they had not yet mastered division. More direct introduction of the standard division algorithm is favored in elementary grades, with instruction of transitional processes curtailed. Weaknesses in transitional algorithms appear to outweigh…
Ultrametric Hierarchical Clustering Algorithms.
ERIC Educational Resources Information Center
Milligan, Glenn W.
1979-01-01
Johnson has shown that the single linkage and complete linkage hierarchical clustering algorithms induce a metric on the data known as the ultrametric. Johnson's proof is extended to four other common clustering algorithms. Two additional methods also produce hierarchical structures which can violate the ultrametric inequality. (Author/CTM)
The Training Effectiveness Algorithm.
ERIC Educational Resources Information Center
Cantor, Jeffrey A.
1988-01-01
Describes the Training Effectiveness Algorithm, a systematic procedure for identifying the cause of reported training problems which was developed for use in the U.S. Navy. A two-step review by subject matter experts is explained, and applications of the algorithm to other organizations and training systems are discussed. (Author/LRW)
JavaGenes and Condor: Cycle-Scavenging Genetic Algorithms
NASA Technical Reports Server (NTRS)
Globus, Al; Langhirt, Eric; Livny, Miron; Ramamurthy, Ravishankar; Soloman, Marvin; Traugott, Steve
2000-01-01
A genetic algorithm code, JavaGenes, was written in Java and used to evolve pharmaceutical drug molecules and digital circuits. JavaGenes was run under the Condor cycle-scavenging batch system managing 100-170 desktop SGI workstations. Genetic algorithms mimic biological evolution by evolving solutions to problems using crossover and mutation. While most genetic algorithms evolve strings or trees, JavaGenes evolves graphs representing (currently) molecules and circuits. Java was chosen as the implementation language because the genetic algorithm requires random splitting and recombining of graphs, a complex data structure manipulation with ample opportunities for memory leaks, loose pointers, out-of-bound indices, and other hard to find bugs. Java garbage-collection memory management, lack of pointer arithmetic, and array-bounds index checking prevents these bugs from occurring, substantially reducing development time. While a run-time performance penalty must be paid, the only unacceptable performance we encountered was using standard Java serialization to checkpoint and restart the code. This was fixed by a two-day implementation of custom checkpointing. JavaGenes is minimally integrated with Condor; in other words, JavaGenes must do its own checkpointing and I/O redirection. A prototype Java-aware version of Condor was developed using standard Java serialization for checkpointing. For the prototype to be useful, standard Java serialization must be significantly optimized. JavaGenes is approximately 8700 lines of code and a few thousand JavaGenes jobs have been run. Most jobs ran for a few days. Results include proof that genetic algorithms can evolve directed and undirected graphs, development of a novel crossover operator for graphs, a paper in the journal Nanotechnology, and another paper in preparation.
Distributed autonomous systems: resource management, planning, and control algorithms
NASA Astrophysics Data System (ADS)
Smith, James F., III; Nguyen, ThanhVu H.
2005-05-01
Distributed autonomous systems, i.e., systems that have separated distributed components, each of which, exhibit some degree of autonomy are increasingly providing solutions to naval and other DoD problems. Recently developed control, planning and resource allocation algorithms for two types of distributed autonomous systems will be discussed. The first distributed autonomous system (DAS) to be discussed consists of a collection of unmanned aerial vehicles (UAVs) that are under fuzzy logic control. The UAVs fly and conduct meteorological sampling in a coordinated fashion determined by their fuzzy logic controllers to determine the atmospheric index of refraction. Once in flight no human intervention is required. A fuzzy planning algorithm determines the optimal trajectory, sampling rate and pattern for the UAVs and an interferometer platform while taking into account risk, reliability, priority for sampling in certain regions, fuel limitations, mission cost, and related uncertainties. The real-time fuzzy control algorithm running on each UAV will give the UAV limited autonomy allowing it to change course immediately without consulting with any commander, request other UAVs to help it, alter its sampling pattern and rate when observing interesting phenomena, or to terminate the mission and return to base. The algorithms developed will be compared to a resource manager (RM) developed for another DAS problem related to electronic attack (EA). This RM is based on fuzzy logic and optimized by evolutionary algorithms. It allows a group of dissimilar platforms to use EA resources distributed throughout the group. For both DAS types significant theoretical and simulation results will be presented.
Faster Algorithms on Branch and Clique Decompositions
NASA Astrophysics Data System (ADS)
Bodlaender, Hans L.; van Leeuwen, Erik Jan; van Rooij, Johan M. M.; Vatshelle, Martin
We combine two techniques recently introduced to obtain faster dynamic programming algorithms for optimization problems on graph decompositions. The unification of generalized fast subset convolution and fast matrix multiplication yields significant improvements to the running time of previous algorithms for several optimization problems. As an example, we give an O^{*}(3^{ω/2k}) time algorithm for Minimum Dominating Set on graphs of branchwidth k, improving on the previous O *(4 k ) algorithm. Here ω is the exponent in the running time of the best matrix multiplication algorithm (currently ω< 2.376). For graphs of cliquewidth k, we improve from O *(8 k ) to O *(4 k ). We also obtain an algorithm for counting the number of perfect matchings of a graph, given a branch decomposition of width k, that runs in time O^{*}(2^{ω/2k}). Generalizing these approaches, we obtain faster algorithms for all so-called [ρ,σ]-domination problems on branch decompositions if ρ and σ are finite or cofinite. The algorithms presented in this paper either attain or are very close to natural lower bounds for these problems.
Oscillation Detection Algorithm Development Summary Report and Test Plan
Zhou, Ning; Huang, Zhenyu; Tuffner, Francis K.; Jin, Shuangshuang
2009-10-03
Small signal stability problems are one of the major threats to grid stability and reliability in California and the western U.S. power grid. An unstable oscillatory mode can cause large-amplitude oscillations and may result in system breakup and large-scale blackouts. There have been several incidents of system-wide oscillations. Of them, the most notable is the August 10, 1996 western system breakup produced as a result of undamped system-wide oscillations. There is a great need for real-time monitoring of small-signal oscillations in the system. In power systems, a small-signal oscillation is the result of poor electromechanical damping. Considerable understanding and literature have been developed on the small-signal stability problem over the past 50+ years. These studies have been mainly based on a linearized system model and eigenvalue analysis of its characteristic matrix. However, its practical feasibility is greatly limited as power system models have been found inadequate in describing real-time operating conditions. Significant efforts have been devoted to monitoring system oscillatory behaviors from real-time measurements in the past 20 years. The deployment of phasor measurement units (PMU) provides high-precision time-synchronized data needed for estimating oscillation modes. Measurement-based modal analysis, also known as ModeMeter, uses real-time phasor measure-ments to estimate system oscillation modes and their damping. Low damping indicates potential system stability issues. Oscillation alarms can be issued when the power system is lightly damped. A good oscillation alarm tool can provide time for operators to take remedial reaction and reduce the probability of a system breakup as a result of a light damping condition. Real-time oscillation monitoring requires ModeMeter algorithms to have the capability to work with various kinds of measurements: disturbance data (ringdown signals), noise probing data, and ambient data. Several measurement
Fast Formal Analysis of Requirements via "Topoi Diagrams"
NASA Technical Reports Server (NTRS)
Menzies, Tim; Powell, John; Houle, Michael E.; Kelly, John C. (Technical Monitor)
2001-01-01
Early testing of requirements can decrease the cost of removing errors in software projects. However, unless done carefully, that testing process can significantly add to the cost of requirements analysis. We show here that requirements expressed as topoi diagrams can be built and tested cheaply using our SP2 algorithm, the formal temporal properties of a large class of topoi can be proven very quickly, in time nearly linear in the number of nodes and edges in the diagram. There are two limitations to our approach. Firstly, topoi diagrams cannot express certain complex concepts such as iteration and sub-routine calls. Hence, our approach is more useful for requirements engineering than for traditional model checking domains. Secondly, out approach is better for exploring the temporal occurrence of properties than the temporal ordering of properties. Within these restrictions, we can express a useful range of concepts currently seen in requirements engineering, and a wide range of interesting temporal properties.
A fast, robust algorithm for power line interference cancellation in neural recording
NASA Astrophysics Data System (ADS)
Keshtkaran, Mohammad Reza; Yang, Zhi
2014-04-01
Objective. Power line interference may severely corrupt neural recordings at 50/60 Hz and harmonic frequencies. The interference is usually non-stationary and can vary in frequency, amplitude and phase. To retrieve the gamma-band oscillations at the contaminated frequencies, it is desired to remove the interference without compromising the actual neural signals at the interference frequency bands. In this paper, we present a robust and computationally efficient algorithm for removing power line interference from neural recordings. Approach. The algorithm includes four steps. First, an adaptive notch filter is used to estimate the fundamental frequency of the interference. Subsequently, based on the estimated frequency, harmonics are generated by using discrete-time oscillators, and then the amplitude and phase of each harmonic are estimated by using a modified recursive least squares algorithm. Finally, the estimated interference is subtracted from the recorded data. Main results. The algorithm does not require any reference signal, and can track the frequency, phase and amplitude of each harmonic. When benchmarked with other popular approaches, our algorithm performs better in terms of noise immunity, convergence speed and output signal-to-noise ratio (SNR). While minimally affecting the signal bands of interest, the algorithm consistently yields fast convergence (<100 ms) and substantial interference rejection (output SNR >30 dB) in different conditions of interference strengths (input SNR from -30 to 30 dB), power line frequencies (45-65 Hz) and phase and amplitude drifts. In addition, the algorithm features a straightforward parameter adjustment since the parameters are independent of the input SNR, input signal power and the sampling rate. A hardware prototype was fabricated in a 65 nm CMOS process and tested. Software implementation of the algorithm has been made available for open access at https://github.com/mrezak/removePLI. Significance. The proposed
Algorithm Optimally Allocates Actuation of a Spacecraft
NASA Technical Reports Server (NTRS)
Motaghedi, Shi
2007-01-01
A report presents an algorithm that solves the following problem: Allocate the force and/or torque to be exerted by each thruster and reaction-wheel assembly on a spacecraft for best performance, defined as minimizing the error between (1) the total force and torque commanded by the spacecraft control system and (2) the total of forces and torques actually exerted by all the thrusters and reaction wheels. The algorithm incorporates the matrix vector relationship between (1) the total applied force and torque and (2) the individual actuator force and torque values. It takes account of such constraints as lower and upper limits on the force or torque that can be applied by a given actuator. The algorithm divides the aforementioned problem into two optimization problems that it solves sequentially. These problems are of a type, known in the art as semi-definite programming problems, that involve linear matrix inequalities. The algorithm incorporates, as sub-algorithms, prior algorithms that solve such optimization problems very efficiently. The algorithm affords the additional advantage that the solution requires the minimum rate of consumption of fuel for the given best performance.
Passive MMW algorithm performance characterization using MACET
NASA Astrophysics Data System (ADS)
Williams, Bradford D.; Watson, John S.; Amphay, Sengvieng A.
1997-06-01
As passive millimeter wave sensor technology matures, algorithms which are tailored to exploit the benefits of this technology are being developed. The expedient development of such algorithms requires an understanding of not only the gross phenomenology, but also specific quirks and limitations inherent in sensors and the data gathering methodology specific to this regime. This level of understanding is approached as the technology matures and increasing amounts of data become available for analysis. The Armament Directorate of Wright Laboratory, WL/MN, has spearheaded the advancement of passive millimeter-wave technology in algorithm development tools and modeling capability as well as sensor development. A passive MMW channel is available within WL/MNs popular multi-channel modeling program Irma, and a sample passive MMW algorithm is incorporated into the Modular Algorithm Concept Evaluation Tool, an algorithm development and evaluation system. The Millimeter Wave Analysis of Passive Signatures system provides excellent data collection capability in the 35, 60, and 95 GHz MMW bands. This paper exploits these assets for the study of the PMMW signature of a High Mobility Multi- Purpose Wheeled Vehicle in the three bands mentioned, and the effect of camouflage upon this signature and autonomous target recognition algorithm performance.
Speed and convergence properties of gradient algorithms for optimization of IMRT.
Zhang, Xiaodong; Liu, Helen; Wang, Xiaochun; Dong, Lei; Wu, Qiuwen; Mohan, Radhe
2004-05-01
Gradient algorithms are the most commonly employed search methods in the routine optimization of IMRT plans. It is well known that local minima can exist for dose-volume-based and biology-based objective functions. The purpose of this paper is to compare the relative speed of different gradient algorithms, to investigate the strategies for accelerating the optimization process, to assess the validity of these strategies, and to study the convergence properties of these algorithms for dose-volume and biological objective functions. With these aims in mind, we implemented Newton's, conjugate gradient (CG), and the steepest decent (SD) algorithms for dose-volume- and EUD-based objective functions. Our implementation of Newton's algorithm approximates the second derivative matrix (Hessian) by its diagonal. The standard SD algorithm and the CG algorithm with "line minimization" were also implemented. In addition, we investigated the use of a variation of the CG algorithm, called the "scaled conjugate gradient" (SCG) algorithm. To accelerate the optimization process, we investigated the validity of the use of a "hybrid optimization" strategy, in which approximations to calculated dose distributions are used during most of the iterations. Published studies have indicated that getting trapped in local minima is not a significant problem. To investigate this issue further, we first obtained, by trial and error, and starting with uniform intensity distributions, the parameters of the dose-volume- or EUD-based objective functions which produced IMRT plans that satisfied the clinical requirements. Using the resulting optimized intensity distributions as the initial guess, we investigated the possibility of getting trapped in a local minimum. For most of the results presented, we used a lung cancer case. To illustrate the generality of our methods, the results for a prostate case are also presented. For both dose-volume and EUD based objective functions, Newton's method far
Algorithms for optimal dyadic decision trees
Hush, Don; Porter, Reid
2009-01-01
A new algorithm for constructing optimal dyadic decision trees was recently introduced, analyzed, and shown to be very effective for low dimensional data sets. This paper enhances and extends this algorithm by: introducing an adaptive grid search for the regularization parameter that guarantees optimal solutions for all relevant trees sizes, revising the core tree-building algorithm so that its run time is substantially smaller for most regularization parameter values on the grid, and incorporating new data structures and data pre-processing steps that provide significant run time enhancement in practice.
Scheduling Earth Observing Satellites with Evolutionary Algorithms
NASA Technical Reports Server (NTRS)
Globus, Al; Crawford, James; Lohn, Jason; Pryor, Anna
2003-01-01
We hypothesize that evolutionary algorithms can effectively schedule coordinated fleets of Earth observing satellites. The constraints are complex and the bottlenecks are not well understood, a condition where evolutionary algorithms are often effective. This is, in part, because evolutionary algorithms require only that one can represent solutions, modify solutions, and evaluate solution fitness. To test the hypothesis we have developed a representative set of problems, produced optimization software (in Java) to solve them, and run experiments comparing techniques. This paper presents initial results of a comparison of several evolutionary and other optimization techniques; namely the genetic algorithm, simulated annealing, squeaky wheel optimization, and stochastic hill climbing. We also compare separate satellite vs. integrated scheduling of a two satellite constellation. While the results are not definitive, tests to date suggest that simulated annealing is the best search technique and integrated scheduling is superior.
Non-Manhattan layout extraction algorithm
NASA Astrophysics Data System (ADS)
Satkhozhina, Aziza; Ahmadullin, Ildus; Allebach, Jan P.; Lin, Qian; Liu, Jerry; Tretter, Daniel; O'Brien-Strain, Eamonn; Hunter, Andrew
2013-03-01
Automated publishing requires large databases containing document page layout templates. The number of layout templates that need to be created and stored grows exponentially with the complexity of the document layouts. A better approach for automated publishing is to reuse layout templates of existing documents for the generation of new documents. In this paper, we present an algorithm for template extraction from a docu- ment page image. We use the cost-optimized segmentation algorithm (COS) to segment the image, and Voronoi decomposition to cluster the text regions. Then, we create a block image where each block represents a homo- geneous region of the document page. We construct a geometrical tree that describes the hierarchical structure of the document page. We also implement a font recognition algorithm to analyze the font of each text region. We present a detailed description of the algorithm and our preliminary results.
Parallelization of a blind deconvolution algorithm
NASA Astrophysics Data System (ADS)
Matson, Charles L.; Borelli, Kathy J.
2006-09-01
Often it is of interest to deblur imagery in order to obtain higher-resolution images. Deblurring requires knowledge of the blurring function - information that is often not available separately from the blurred imagery. Blind deconvolution algorithms overcome this problem by jointly estimating both the high-resolution image and the blurring function from the blurred imagery. Because blind deconvolution algorithms are iterative in nature, they can take minutes to days to deblur an image depending how many frames of data are used for the deblurring and the platforms on which the algorithms are executed. Here we present our progress in parallelizing a blind deconvolution algorithm to increase its execution speed. This progress includes sub-frame parallelization and a code structure that is not specialized to a specific computer hardware architecture.
A smoothing algorithm using cubic spline functions
NASA Technical Reports Server (NTRS)
Smith, R. E., Jr.; Price, J. M.; Howser, L. M.
1974-01-01
Two algorithms are presented for smoothing arbitrary sets of data. They are the explicit variable algorithm and the parametric variable algorithm. The former would be used where large gradients are not encountered because of the smaller amount of calculation required. The latter would be used if the data being smoothed were double valued or experienced large gradients. Both algorithms use a least-squares technique to obtain a cubic spline fit to the data. The advantage of the spline fit is that the first and second derivatives are continuous. This method is best used in an interactive graphics environment so that the junction values for the spline curve can be manipulated to improve the fit.
Cryptanalysis of optical security systems with significant output images.
Situ, Guohai; Gopinathan, Unnikrishnan; Monaghan, David S; Sheridan, John T
2007-08-01
The security of the encryption and verification techniques with significant output images is examined by a known-plaintext attack. We introduce an iterative phase-retrieval algorithm based on multiple intensity measurements to heuristically estimate the phase key in the Fourier domain by several plaintext-cyphertext pairs. We obtain correlation output images with very low error by correlating the estimated key with corresponding random phase masks. Our studies show that the convergence behavior of this algorithm sensitively depends on the starting point. We also demonstrate that this algorithm can be used to attack the double random phase encoding technique.
Algorithm for in-flight gyroscope calibration
NASA Technical Reports Server (NTRS)
Davenport, P. B.; Welter, G. L.
1988-01-01
An optimal algorithm for the in-flight calibration of spacecraft gyroscope systems is presented. Special consideration is given to the selection of the loss function weight matrix in situations in which the spacecraft attitude sensors provide significantly more accurate information in pitch and yaw than in roll, such as will be the case in the Hubble Space Telescope mission. The results of numerical tests that verify the accuracy of the algorithm are discussed.
Numerical linear algebra algorithms and software
NASA Astrophysics Data System (ADS)
Dongarra, Jack J.; Eijkhout, Victor
2000-11-01
The increasing availability of advanced-architecture computers has a significant effect on all spheres of scientific computation, including algorithm research and software development in numerical linear algebra. Linear algebra - in particular, the solution of linear systems of equations - lies at the heart of most calculations in scientific computing. This paper discusses some of the recent developments in linear algebra designed to exploit these advanced-architecture computers. We discuss two broad classes of algorithms: those for dense, and those for sparse matrices.
An enhanced mode shape identification algorithm
NASA Technical Reports Server (NTRS)
Roemer, Michael J.; Mook, D. Joseph
1989-01-01
A mode shape identification algorithm is developed which is characterized by a low sensitivity to measurement noise and a high accuracy of mode identification. The algorithm proposed here is also capable of identifying the mode shapes of structures with significant damping. The combined results indicate that mode shape identification is much more dependent on measurement noise than identification of natural frequencies. Accurate detection of modal parameters and mode shapes is demonstrated for modes with damping ratios exceeding 15 percent.
Self-organization and clustering algorithms
NASA Technical Reports Server (NTRS)
Bezdek, James C.
1991-01-01
Kohonen's feature maps approach to clustering is often likened to the k or c-means clustering algorithms. Here, the author identifies some similarities and differences between the hard and fuzzy c-Means (HCM/FCM) or ISODATA algorithms and Kohonen's self-organizing approach. The author concludes that some differences are significant, but at the same time there may be some important unknown relationships between the two methodologies. Several avenues of research are proposed.
Bhave, Sampada; Lingala, Sajan Goud; Jacob, Mathews
2014-01-01
Recent work on blind compressed sensing (BCS) has shown that exploiting sparsity in dictionaries that are learnt directly from the data at hand can outperform compressed sensing (CS) that uses fixed dictionaries. A challenge with BCS however is the large computational complexity during its optimization, which limits its practical use in several MRI applications. In this paper, we propose a novel optimization algorithm that utilize variable splitting strategies to significantly improve the convergence speed of the BCS optimization. The splitting allows us to efficiently decouple the sparse coefficient, and dictionary update steps from the data fidelity term, resulting in subproblems that take closed form analytical solutions, which otherwise require slower iterative conjugate gradient algorithms. Through experiments on multi coil parametric MRI data, we demonstrate the superior performance of BCS over conventional CS schemes, while achieving convergence speed up factors of over 10 fold over the previously proposed implementation of the BCS algorithm.
An item-oriented recommendation algorithm on cold-start problem
NASA Astrophysics Data System (ADS)
Qiu, Tian; Chen, Guang; Zhang, Zi-Ke; Zhou, Tao
2011-09-01
Based on a hybrid algorithm incorporating the heat conduction and probability spreading processes (Proc. Natl. Acad. Sci. U.S.A., 107 (2010) 4511), in this letter, we propose an improved method by introducing an item-oriented function, focusing on solving the dilemma of the recommendation accuracy between the cold and popular items. Differently from previous works, the present algorithm does not require any additional information (e.g., tags). Further experimental results obtained in three real datasets, RYM, Netflix and MovieLens, show that, compared with the original hybrid method, the proposed algorithm significantly enhances the recommendation accuracy of the cold items, while it keeps the recommendation accuracy of the overall and the popular items. This work might shed some light on both understanding and designing effective methods for long-tailed online applications of recommender systems.
Ouroboros: A Tool for Building Generic, Hybrid, Divide& Conquer Algorithms
Johnson, J R; Foster, I
2003-05-01
A hybrid divide and conquer algorithm is one that switches from a divide and conquer to an iterative strategy at a specified problem size. Such algorithms can provide significant performance improvements relative to alternatives that use a single strategy. However, the identification of the optimal problem size at which to switch for a particular algorithm and platform can be challenging. We describe an automated approach to this problem that first conducts experiments to explore the performance space on a particular platform and then uses the resulting performance data to construct an optimal hybrid algorithm on that platform. We implement this technique in a tool, ''Ouroboros'', that automatically constructs a high-performance hybrid algorithm from a set of registered algorithms. We present results obtained with this tool for several classical divide and conquer algorithms, including matrix multiply and sorting, and report speedups of up to six times achieved over non-hybrid algorithms.
[An Algorithm for Correcting Fetal Heart Rate Baseline].
Li, Xiaodong; Lu, Yaosheng
2015-10-01
Fetal heart rate (FHR) baseline estimation is of significance for the computerized analysis of fetal heart rate and the assessment of fetal state. In our work, a fetal heart rate baseline correction algorithm was presented to make the existing baseline more accurate and fit to the tracings. Firstly, the deviation of the existing FHR baseline was found and corrected. And then a new baseline was obtained finally after treatment with some smoothing methods. To assess the performance of FHR baseline correction algorithm, a new FHR baseline estimation algorithm that combined baseline estimation algorithm and the baseline correction algorithm was compared with two existing FHR baseline estimation algorithms. The results showed that the new FHR baseline estimation algorithm did well in both accuracy and efficiency. And the results also proved the effectiveness of the FHR baseline correction algorithm.
Systematic identification of statistically significant network measures
NASA Astrophysics Data System (ADS)
Ziv, Etay; Koytcheff, Robin; Middendorf, Manuel; Wiggins, Chris
2005-01-01
We present a graph embedding space (i.e., a set of measures on graphs) for performing statistical analyses of networks. Key improvements over existing approaches include discovery of “motif hubs” (multiple overlapping significant subgraphs), computational efficiency relative to subgraph census, and flexibility (the method is easily generalizable to weighted and signed graphs). The embedding space is based on scalars, functionals of the adjacency matrix representing the network. Scalars are global, involving all nodes; although they can be related to subgraph enumeration, there is not a one-to-one mapping between scalars and subgraphs. Improvements in network randomization and significance testing—we learn the distribution rather than assuming Gaussianity—are also presented. The resulting algorithm establishes a systematic approach to the identification of the most significant scalars and suggests machine-learning techniques for network classification.
The Algorithm Selection Problem
NASA Technical Reports Server (NTRS)
Minton, Steve; Allen, John; Deiss, Ron (Technical Monitor)
1994-01-01
Work on NP-hard problems has shown that many instances of these theoretically computationally difficult problems are quite easy. The field has also shown that choosing the right algorithm for the problem can have a profound effect on the time needed to find a solution. However, to date there has been little work showing how to select the right algorithm for solving any particular problem. The paper refers to this as the algorithm selection problem. It describes some of the aspects that make this problem difficult, as well as proposes a technique for addressing it.
Jimenez, Edward Steven,
2013-09-01
The goal of this work is to develop a fast computed tomography (CT) reconstruction algorithm based on graphics processing units (GPU) that achieves significant improvement over traditional central processing unit (CPU) based implementations. The main challenge in developing a CT algorithm that is capable of handling very large datasets is parallelizing the algorithm in such a way that data transfer does not hinder performance of the reconstruction algorithm. General Purpose Graphics Processing (GPGPU) is a new technology that the Science and Technology (S&T) community is starting to adopt in many fields where CPU-based computing is the norm. GPGPU programming requires a new approach to algorithm development that utilizes massively multi-threaded environments. Multi-threaded algorithms in general are difficult to optimize since performance bottlenecks occur that are non-existent in single-threaded algorithms such as memory latencies. If an efficient GPU-based CT reconstruction algorithm can be developed; computational times could be improved by a factor of 20. Additionally, cost benefits will be realized as commodity graphics hardware could potentially replace expensive supercomputers and high-end workstations. This project will take advantage of the CUDA programming environment and attempt to parallelize the task in such a way that multiple slices of the reconstruction volume are computed simultaneously. This work will also take advantage of the GPU memory by utilizing asynchronous memory transfers, GPU texture memory, and (when possible) pinned host memory so that the memory transfer bottleneck inherent to GPGPU is amortized. Additionally, this work will take advantage of GPU-specific hardware (i.e. fast texture memory, pixel-pipelines, hardware interpolators, and varying memory hierarchy) that will allow for additional performance improvements.
A single TLD dose algorithm to satisfy federal standards and typical field conditions
Stanford, N.; McCurdy, D.E. )
1990-06-01
Modern whole-body dosimeters are often required to accurately measure the absorbed dose in a wide range of radiation fields. While programs are commonly developed around the fields tested as part of the National Voluntary Accreditation Program (NVLAP), the actual fields of application may be significantly different. Dose algorithms designed to meet the NVLAP standard, which emphasizes photons and high-energy beta radiation, may not be capable of the beta-energy discrimination necessary for accurate assessment of absorbed dose in the work environment. To address this problem, some processors use one algorithm for NVLAP testing and one or more different algorithms for the work environments. After several years of experience with a multiple algorithm approach, the Dosimetry Services Group of Yankee Atomic Electric Company (YAEC) developed a one-algorithm system for use with a four-element TLD badge using Li2B4O7 and CaSO4 phosphors. The design of the dosimeter allows the measurement of the effective energies of both photon and beta components of the radiation field, resulting in excellent mixed-field capability. The algorithm was successfully tested in all of the NVLAP photon and beta fields, as well as several non-NVLAP fields representative of the work environment. The work environment fields, including low- and medium-energy beta radiation and mixed fields of low-energy photons and beta particles, are often more demanding than the NVLAP fields. This paper discusses the development of the algorithm as well as some results of the system testing including: mixed-field irradiations, angular response, and a unique test to demonstrate the stability of the algorithm. An analysis of the uncertainty of the reported doses under various irradiation conditions is also presented.
A single TLD dose algorithm to satisfy federal standards and typical field conditions.
Stanford, N; McCurdy, D E
1990-06-01
Modern whole-body dosimeters are often required to accurately measure the absorbed dose in a wide range of radiation fields. While programs are commonly developed around the fields tested as part of the National Voluntary Accreditation Program (NVLAP), the actual fields of application may be significantly different. Dose algorithms designed to meet the NVLAP standard, which emphasizes photons and high-energy beta radiation, may not be capable of the beta-energy discrimination necessary for accurate assessment of absorbed dose in the work environment. To address this problem, some processors use one algorithm for NVLAP testing and one or more different algorithms for the work environments. After several years of experience with a multiple algorithm approach, the Dosimetry Services Group of Yankee Atomic Electric Company (YAEC) developed a one-algorithm system for use with a four-element TLD badge using Li2B4O7 and CaSO4 phosphors. The design of the dosimeter allows the measurement of the effective energies of both photon and beta components of the radiation field, resulting in excellent mixed-field capability. The algorithm was successfully tested in all of the NVLAP photon and beta fields, as well as several non-NVLAP fields representative of the work environment. The work environment fields, including low- and medium-energy beta radiation and mixed fields of low-energy photons and beta particles, are often more demanding than the NVLAP fields. This paper discusses the development of the algorithm as well as some results of the system testing including: mixed-field irradiations, angular response, and a unique test to demonstrate the stability of the algorithm. An analysis of the uncertainty of the reported doses under various irradiation conditions is also presented.
Bouallègue, Fayçal Ben; Crouzet, Jean-François; Comtat, Claude; Fourcade, Marjolaine; Mohammadi, Bijan; Mariano-Goulart, Denis
2007-07-01
This paper presents an extended 3-D exact rebinning formula in the Fourier space that leads to an iterative reprojection algorithm (iterative FOREPROJ), which enables the estimation of unmeasured oblique projection data on the basis of the whole set of measured data. In first approximation, this analytical formula also leads to an extended Fourier rebinning equation that is the basis for an approximate reprojection algorithm (extended FORE). These algorithms were evaluated on numerically simulated 3-D positron emission tomography (PET) data for the solution of the truncation problem, i.e., the estimation of the missing portions in the oblique projection data, before the application of algorithms that require complete projection data such as some rebinning methods (FOREX) or 3-D reconstruction algorithms (3DRP or direct Fourier methods). By taking advantage of all the 3-D data statistics, the iterative FOREPROJ reprojection provides a reliable alternative to the classical FOREPROJ method, which only exploits the low-statistics nonoblique data. It significantly improves the quality of the external reconstructed slices without loss of spatial resolution. As for the approximate extended FORE algorithm, it clearly exhibits limitations due to axial interpolations, but will require clinical studies with more realistic measured data in order to decide on its pertinence.
Liu, Kai-Chun; Chan, Chia-Tai
2017-01-01
The proportion of the aging population is rapidly increasing around the world, which will cause stress on society and healthcare systems. In recent years, advances in technology have created new opportunities for automatic activities of daily living (ADL) monitoring to improve the quality of life and provide adequate medical service for the elderly. Such automatic ADL monitoring requires reliable ADL information on a fine-grained level, especially for the status of interaction between body gestures and the environment in the real-world. In this work, we propose a significant change spotting mechanism for periodic human motion segmentation during cleaning task performance. A novel approach is proposed based on the search for a significant change of gestures, which can manage critical technical issues in activity recognition, such as continuous data segmentation, individual variance, and category ambiguity. Three typical machine learning classification algorithms are utilized for the identification of the significant change candidate, including a Support Vector Machine (SVM), k-Nearest Neighbors (kNN), and Naive Bayesian (NB) algorithm. Overall, the proposed approach achieves 96.41% in the F1-score by using the SVM classifier. The results show that the proposed approach can fulfill the requirement of fine-grained human motion segmentation for automatic ADL monitoring. PMID:28106853
An automatic editing algorithm for GPS data
NASA Technical Reports Server (NTRS)
Blewitt, Geoffrey
1990-01-01
An algorithm has been developed to edit automatically Global Positioning System data such that outlier deletion, cycle slip identification, and correction are independent of clock instability, selective availability, receiver-satellite kinematics, and tropospheric conditions. This algorithm, called TurboEdit, operates on undifferenced, dual frequency carrier phase data, and requires the use of P code pseudorange data and a smoothly varying ionospheric electron content. TurboEdit was tested on the large data set from the CASA Uno experiment, which contained over 2500 cycle slips.Analyst intervention was required on 1 percent of the station-satellite passes, almost all of these problems being due to difficulties in extrapolating variations in the ionospheric delay. The algorithm is presently being adapted for real time data editing in the Rogue receiver for continuous monitoring applications.
A Scalable Gaussian Process Analysis Algorithm for Biomass Monitoring
Chandola, Varun; Vatsavai, Raju
2011-01-01
Biomass monitoring is vital for studying the carbon cycle of earth's ecosystem and has several significant implications, especially in the context of understanding climate change and its impacts. Recently, several change detection methods have been proposed to identify land cover changes in temporal profiles (time series) of vegetation collected using remote sensing instruments, but do not satisfy one or both of the two requirements of the biomass monitoring problem, i.e., {\\em operating in online mode} and {\\em handling periodic time series}. In this paper, we adapt Gaussian process regression to detect changes in such time series in an online fashion. While Gaussian process (GP) have been widely used as a kernel based learning method for regression and classification, their applicability to massive spatio-temporal data sets, such as remote sensing data, has been limited owing to the high computational costs involved. We focus on addressing the scalability issues associated with the proposed GP based change detection algorithm. This paper makes several significant contributions. First, we propose a GP based online time series change detection algorithm and demonstrate its effectiveness in detecting different types of changes in {\\em Normalized Difference Vegetation Index} (NDVI) data obtained from a study area in Iowa, USA. Second, we propose an efficient Toeplitz matrix based solution which significantly improves the computational complexity and memory requirements of the proposed GP based method. Specifically, the proposed solution can analyze a time series of length $t$ in $O(t^2)$ time while maintaining a $O(t)$ memory footprint, compared to the $O(t^3)$ time and $O(t^2)$ memory requirement of standard matrix manipulation based methods. Third, we describe a parallel version of the proposed solution which can be used to simultaneously analyze a large number of time series. We study three different parallel implementations: using threads, MPI, and a hybrid
Filtered refocusing: a volumetric reconstruction algorithm for plenoptic-PIV
NASA Astrophysics Data System (ADS)
Fahringer, Timothy W.; Thurow, Brian S.
2016-09-01
A new algorithm for reconstruction of 3D particle fields from plenoptic image data is presented. The algorithm is based on the technique of computational refocusing with the addition of a post reconstruction filter to remove the out of focus particles. This new algorithm is tested in terms of reconstruction quality on synthetic particle fields as well as a synthetically generated 3D Gaussian ring vortex. Preliminary results indicate that the new algorithm performs as well as the MART algorithm (used in previous work) in terms of the reconstructed particle position accuracy, but produces more elongated particles. The major advantage to the new algorithm is the dramatic reduction in the computational cost required to reconstruct a volume. It is shown that the new algorithm takes 1/9th the time to reconstruct the same volume as MART while using minimal resources. Experimental results are presented in the form of the wake behind a cylinder at a Reynolds number of 185.
An Algorithm to Find Minimum Cost Flow in a Network.
The paper describes an algorithm to find a flow of minimum cost in a network and a computer program which performs this algorithm. The principle of...optimal. What might make this algorithm efficient is the fact that the information which has been gathered at some iteration to find a negative...circuit will be used to find a negative circuit at next iteration so that each iteration requires a relatively small amount of work. (Author)
Diagnostic Algorithm Benchmarking
NASA Technical Reports Server (NTRS)
Poll, Scott
2011-01-01
A poster for the NASA Aviation Safety Program Annual Technical Meeting. It describes empirical benchmarking on diagnostic algorithms using data from the ADAPT Electrical Power System testbed and a diagnostic software framework.
Inclusive Flavour Tagging Algorithm
NASA Astrophysics Data System (ADS)
Likhomanenko, Tatiana; Derkach, Denis; Rogozhnikov, Alex
2016-10-01
Identifying the flavour of neutral B mesons production is one of the most important components needed in the study of time-dependent CP violation. The harsh environment of the Large Hadron Collider makes it particularly hard to succeed in this task. We present an inclusive flavour-tagging algorithm as an upgrade of the algorithms currently used by the LHCb experiment. Specifically, a probabilistic model which efficiently combines information from reconstructed vertices and tracks using machine learning is proposed. The algorithm does not use information about underlying physics process. It reduces the dependence on the performance of lower level identification capacities and thus increases the overall performance. The proposed inclusive flavour-tagging algorithm is applicable to tag the flavour of B mesons in any proton-proton experiment.
Control algorithms for autonomous robot navigation
Jorgensen, C.C.
1985-09-20
This paper examines control algorithm requirements for autonomous robot navigation outside laboratory environments. Three aspects of navigation are considered: navigation control in explored terrain, environment interactions with robot sensors, and navigation control in unanticipated situations. Major navigation methods are presented and relevance of traditional human learning theory is discussed. A new navigation technique linking graph theory and incidental learning is introduced.
Problem Solving with Generic Algorithms and Computers.
ERIC Educational Resources Information Center
Larson, Jay
Success in using a computer in education as a problem-solving tool requires a change in the way of thinking or of approaching a problem. An algorithm, i.e., a finite step-by-step solution to a problem, can be designed around the data processing concepts of input, processing, and output to provide a basis for classifying problems. If educators…
NASA Technical Reports Server (NTRS)
Fijany, Amir
1993-01-01
In this paper, parallel O(log n) algorithms for computation of rigid multibody dynamics are developed. These parallel algorithms are derived by parallelization of new O(n) algorithms for the problem. The underlying feature of these O(n) algorithms is a drastically different strategy for decomposition of interbody force which leads to a new factorization of the mass matrix (M). Specifically, it is shown that a factorization of the inverse of the mass matrix in the form of the Schur Complement is derived as M(exp -1) = C - B(exp *)A(exp -1)B, wherein matrices C, A, and B are block tridiagonal matrices. The new O(n) algorithm is then derived as a recursive implementation of this factorization of M(exp -1). For the closed-chain systems, similar factorizations and O(n) algorithms for computation of Operational Space Mass Matrix lambda and its inverse lambda(exp -1) are also derived. It is shown that these O(n) algorithms are strictly parallel, that is, they are less efficient than other algorithms for serial computation of the problem. But, to our knowledge, they are the only known algorithms that can be parallelized and that lead to both time- and processor-optimal parallel algorithms for the problem, i.e., parallel O(log n) algorithms with O(n) processors. The developed parallel algorithms, in addition to their theoretical significance, are also practical from an implementation point of view due to their simple architectural requirements.
Facial Skin Segmentation Using Bacterial Foraging Optimization Algorithm
Bakhshali, Mohamad Amin; Shamsi, Mousa
2012-01-01
Nowadays, analyzing human facial image has gained an ever-increasing importance due to its various applications. Image segmentation is required as a very important and fundamental operation for significant analysis and interpretation of images. Among the segmentation methods, image thresholding technique is one of the most well-known methods due to its simplicity, robustness, and high precision. Thresholding based on optimization of the objective function is among the best methods. Numerous methods exist for the optimization process and bacterial foraging optimization (BFO) is among the most efficient and novel ones. Using this method, optimal threshold is extracted and then segmentation of facial skin is performed. In the proposed method, first, the color facial image is converted from RGB color space to Improved Hue-Luminance-Saturation (IHLS) color space, because IHLS has a great mapping of the skin color. To perform thresholding, the entropy-based method is applied. In order to find the optimum threshold, BFO is used. In order to analyze the proposed algorithm, color images of the database of Sahand University of Technology of Tabriz, Iran were used. Then, using Otsu and Kapur methods, thresholding was performed. In order to have a better understanding from the proposed algorithm; genetic algorithm (GA) is also used for finding the optimum threshold. The proposed method shows the better results than other thresholding methods. These results include misclassification error accuracy (88%), non-uniformity accuracy (89%), and the accuracy of region's area error (89%). PMID:23724370
Facial skin segmentation using bacterial foraging optimization algorithm.
Bakhshali, Mohamad Amin; Shamsi, Mousa
2012-10-01
Nowadays, analyzing human facial image has gained an ever-increasing importance due to its various applications. Image segmentation is required as a very important and fundamental operation for significant analysis and interpretation of images. Among the segmentation methods, image thresholding technique is one of the most well-known methods due to its simplicity, robustness, and high precision. Thresholding based on optimization of the objective function is among the best methods. Numerous methods exist for the optimization process and bacterial foraging optimization (BFO) is among the most efficient and novel ones. Using this method, optimal threshold is extracted and then segmentation of facial skin is performed. In the proposed method, first, the color facial image is converted from RGB color space to Improved Hue-Luminance-Saturation (IHLS) color space, because IHLS has a great mapping of the skin color. To perform thresholding, the entropy-based method is applied. In order to find the optimum threshold, BFO is used. In order to analyze the proposed algorithm, color images of the database of Sahand University of Technology of Tabriz, Iran were used. Then, using Otsu and Kapur methods, thresholding was performed. In order to have a better understanding from the proposed algorithm; genetic algorithm (GA) is also used for finding the optimum threshold. The proposed method shows the better results than other thresholding methods. These results include misclassification error accuracy (88%), non-uniformity accuracy (89%), and the accuracy of region's area error (89%).
Improving CMD Areal Density Analysis: Algorithms and Strategies
NASA Astrophysics Data System (ADS)
Wilson, R. E.
2014-06-01
Essential ideas, successes, and difficulties of Areal Density Analysis (ADA) for color-magnitude diagrams (CMDÂ¡Â¯s) of resolved stellar populations are examined, with explanation of various algorithms and strategies for optimal performance. A CMDgeneration program computes theoretical datasets with simulated observational error and a solution program inverts the problem by the method of Differential Corrections (DC) so as to compute parameter values from observed magnitudes and colors, with standard error estimates and correlation coefficients. ADA promises not only impersonal results, but also significant saving of labor, especially where a given dataset is analyzed with several evolution models. Observational errors and multiple star systems, along with various single star characteristics and phenomena, are modeled directly via the Functional Statistics Algorithm (FSA). Unlike Monte Carlo, FSA is not dependent on a random number generator. Discussions include difficulties and overall requirements, such as need for fast evolutionary computation and realization of goals within machine memory limits. Degradation of results due to influence of pixelization on derivatives, Initial Mass Function (IMF) quantization, IMF steepness, low Areal Densities (A ), and large variation in A are reduced or eliminated through a variety of schemes that are explained sufficiently for general application. The Levenberg-Marquardt and MMS algorithms for improvement of solution convergence are contained within the DC program. An example of convergence, which typically is very good, is shown in tabular form. A number of theoretical and practical solution issues are discussed, as are prospects for further development.
2013-07-29
The OpenEIS Algorithm package seeks to provide a low-risk path for building owners, service providers and managers to explore analytical methods for improving building control and operational efficiency. Users of this software can analyze building data, and learn how commercial implementations would provide long-term value. The code also serves as a reference implementation for developers who wish to adapt the algorithms for use in commercial tools or service offerings.
Implementation of Parallel Algorithms
1993-06-30
their socia ’ relations or to achieve some goals. For example, we define a pair-wise force law of i epulsion and attraction for a group of identical...quantization based compression schemes. Photo-refractive crystals, which provide high density recording in real time, are used as our holographic media . The...of Parallel Algorithms (J. Reif, ed.). Kluwer Academic Pu’ ishers, 1993. (4) "A Dynamic Separator Algorithm", D. Armon and J. Reif. To appear in
Parallel Wolff Cluster Algorithms
NASA Astrophysics Data System (ADS)
Bae, S.; Ko, S. H.; Coddington, P. D.
The Wolff single-cluster algorithm is the most efficient method known for Monte Carlo simulation of many spin models. Due to the irregular size, shape and position of the Wolff clusters, this method does not easily lend itself to efficient parallel implementation, so that simulations using this method have thus far been confined to workstations and vector machines. Here we present two parallel implementations of this algorithm, and show that one gives fairly good performance on a MIMD parallel computer.
Algorithmic quantum simulation of memory effects
NASA Astrophysics Data System (ADS)
Alvarez-Rodriguez, U.; Di Candia, R.; Casanova, J.; Sanz, M.; Solano, E.
2017-02-01
We propose a method for the algorithmic quantum simulation of memory effects described by integrodifferential evolution equations. It consists in the systematic use of perturbation theory techniques and a Markovian quantum simulator. Our method aims to efficiently simulate both completely positive and nonpositive dynamics without the requirement of engineering non-Markovian environments. Finally, we find that small error bounds can be reached with polynomially scaling resources, evaluated as the time required for the simulation.
An innovative algorithm for panoramic representation in observation systems
NASA Astrophysics Data System (ADS)
Luison, Cristian; Aquilanti, Valeria; Riccobono, Aldo; Liberace, Claudio
2013-06-01
This document presents the study and test carried out for the development of an innovative algorithm designed to create a panoramic representation of the scene scanned by observation systems operating with passive sensors. The purpose of the algorithm is to represent 360° of scene using staring sensors mounted on stabilized or semi-stabilized platforms, without requirements on video output, both in terms of the transmission format and in terms of frame rate. The algorithm is real-time and does not require step-and-stare technique or special systems to scan the scene. The architecture of the algorithm requires a very low computational cost for the electronics contained in a Multi-Functional Display (MDP) used in defense applications. The algorithm has been implemented and tested on the JANUS NAVAL system, where the results were very satisfactory. Today, a patent is pendent.
Versatility of the CFR algorithm for limited angle reconstruction
Fujieda, I.; Heiskanen, K.; Perez-Mendez, V. )
1990-04-01
The constrained Fourier reconstruction (CFR) algorithm and the iterative reconstruction-reprojection (IRR) algorithm are evaluated based on their accuracy for three types of limited angle reconstruction problems. The cFR algorithm performs better for problems such as Xray CT imaging of a nuclear reactor core with one large data gap due to structural blocking of the source and detector pair. For gated heart imaging by Xray CT, radioisotope distribution imaging by PET or SPECT, using a polygonal array of gamma cameras with insensitive gaps between camera boundaries, the IRR algorithm has a slight advantage over the CFR algorithm but the difference is not significant.
Linear-scaling and parallelisable algorithms for stochastic quantum chemistry
NASA Astrophysics Data System (ADS)
Booth, George H.; Smart, Simon D.; Alavi, Ali
2014-07-01
For many decades, quantum chemical method development has been dominated by algorithms which involve increasingly complex series of tensor contractions over one-electron orbital spaces. Procedures for their derivation and implementation have evolved to require the minimum amount of logic and rely heavily on computationally efficient library-based matrix algebra and optimised paging schemes. In this regard, the recent development of exact stochastic quantum chemical algorithms to reduce computational scaling and memory overhead requires a contrasting algorithmic philosophy, but one which when implemented efficiently can achieve higher accuracy/cost ratios with small random errors. Additionally, they can exploit the continuing trend for massive parallelisation which hinders the progress of deterministic high-level quantum chemical algorithms. In the Quantum Monte Carlo community, stochastic algorithms are ubiquitous but the discrete Fock space of quantum chemical methods is often unfamiliar, and the methods introduce new concepts required for algorithmic efficiency. In this paper, we explore these concepts and detail an algorithm used for Full Configuration Interaction Quantum Monte Carlo (FCIQMC), which is implemented and available in MOLPRO and as a standalone code, and is designed for high-level parallelism and linear-scaling with walker number. Many of the algorithms are also in use in, or can be transferred to, other stochastic quantum chemical methods and implementations. We apply these algorithms to the strongly correlated chromium dimer to demonstrate their efficiency and parallelism.
An Algorithm for Producing Course and Lecture Timetables.
ERIC Educational Resources Information Center
Selim, S. M.
1983-01-01
Describes an improved method for solving typical timetabling problems which was developed for the American University in Cairo. The article outlines the 26-step algorithm, indicates computer storage requirements, shows how the algorithm copes with conflicts, and explains how to obtain the final output in convenient format. (EAO)
On an algorithm for solving parabolic and elliptic equations
NASA Astrophysics Data System (ADS)
D'Ascenzo, N.; Saveliev, V. I.; Chetverushkin, B. N.
2015-08-01
The present-day rapid growth of computer power, in particular, parallel computing systems of ultrahigh performance requires a new approach to the creation of models and solution algorithms for major problems. An algorithm for solving parabolic and elliptic equations is proposed. The capabilities of the method are demonstrated by solving astrophysical problems on high-performance computer systems with massive parallelism.
A Modified Adiabatic Quantum Algorithm for Evaluation of Boolean Functions
NASA Astrophysics Data System (ADS)
Sun, Jie; Lu, Songfeng; Liu, Fang
2015-09-01
In this paper, we propose a modified construction of the quantum adiabatic algorithm for Boolean functions studied by M. Andrecut et al. [13, 14]. Our algorithm has the time complexity O(1) for the evaluation of Boolean functions, without additional computational cost of implementing the driving Hamiltonian, which is required by the adiabatic evolution described in [13, 14].
A general algorithm for the construction of contour plots
NASA Technical Reports Server (NTRS)
Johnson, W.; Silva, F.
1981-01-01
An algorithm is described that performs the task of drawing equal level contours on a plane, which requires interpolation in two dimensions based on data prescribed at points distributed irregularly over the plane. The approach is described in detail. The computer program that implements the algorithm is documented and listed.
DETECTORS AND EXPERIMENTAL METHODS: BESIII track fitting algorithm
NASA Astrophysics Data System (ADS)
Wang, Ji-Ke; Mao, Ze-Pu; Bian, Jian-Ming; Cao, Guo-Fu; Cao, Xue-Xiang; Chen, Shen-Jian; Deng, Zi-Yan; Fu, Cheng-Dong; Gao, Yuan-Ning; He, Kang-Lin; He, Miao; Hua, Chun-Fei; Huang, Bin; Huang, Xing-Tao; Ji, Xiao-Bin; Li, Fei; Li, Bai-Bo; Li, Wei-Dong; Liang, Yu-Tie; Liu, Chun-Xiu; Liu, Huai-Min; Liu, Suo; Liu, Ying-Jie; Ma, Qiu-Mei; Ma, Xiang; Mao, Ya-Jun; Mo, Xiao-Hu; Pan, Ming-Hua; Pang, Cai-Ying; Ping, Rong-Gang; Qin, Ya-Hong; Qiu, Jin-Fa; Sun, Sheng-Sen; Sun, Yong-Zhao; Wang, Liang-Liang; Wen, Shuo-Pin; Wu, Ling-Hui; Xie, Yu-Guang; Xu, Min; Yan, Liang; You, Zheng-Yun; Yuan, Chang-Zheng; Yuan, Ye; Zhang, Bing-Yun; Zhang, Chang-Chun; Zhang, Jian-Yong; Zhang, Xue-Yao; Zhang, Yao; Zheng, Yang-Heng; Zhu, Ke-Jun; Zhu, Yong-Sheng; Zhu, Zhi-Li; Zou, Jia-Heng
2009-10-01
A track fitting algorithm based on the Kalman filter method has been developed for BESIII of BEPCII. The effects of multiple scattering and energy loss when the charged particles go through the detector, non-uniformity of magnetic field (NUMF) and wire sag, etc., have been carefully handled. This algorithm works well and the performance satisfies the physical requirements tested by the simulation data.
An improved algorithm for evaluating trellis phase codes
NASA Technical Reports Server (NTRS)
Mulligan, M. G.; Wilson, S. G.
1984-01-01
A method is described for evaluating the minimum distance parameters of trellis phase codes, including CPFSK, partial response FM, and more importantly, coded CPM (continuous phase modulation) schemes. The algorithm provides dramatically faster execution times and lesser memory requirements than previous algorithms. Results of sample calculations and timing comparisons are included.
An improved algorithm for evaluating trellis phase codes
NASA Technical Reports Server (NTRS)
Mulligan, M. G.; Wilson, S. G.
1982-01-01
A method is described for evaluating the minimum distance parameters of trellis phase codes, including CPFSK, partial response FM, and more importantly, coded CPM (continuous phase modulation) schemes. The algorithm provides dramatically faster execution times and lesser memory requirements than previous algorithms. Results of sample calculations and timing comparisons are included.
Approximation algorithms for planning and control
NASA Technical Reports Server (NTRS)
Boddy, Mark; Dean, Thomas
1989-01-01
A control system operating in a complex environment will encounter a variety of different situations, with varying amounts of time available to respond to critical events. Ideally, such a control system will do the best possible with the time available. In other words, its responses should approximate those that would result from having unlimited time for computation, where the degree of the approximation depends on the amount of time it actually has. There exist approximation algorithms for a wide variety of problems. Unfortunately, the solution to any reasonably complex control problem will require solving several computationally intensive problems. Algorithms for successive approximation are a subclass of the class of anytime algorithms, algorithms that return answers for any amount of computation time, where the answers improve as more time is allotted. An architecture is described for allocating computation time to a set of anytime algorithms, based on expectations regarding the value of the answers they return. The architecture described is quite general, producing optimal schedules for a set of algorithms under widely varying conditions.
A segmentation algorithm for noisy images
Xu, Y.; Olman, V.; Uberbacher, E.C.
1996-12-31
This paper presents a 2-D image segmentation algorithm and addresses issues related to its performance on noisy images. The algorithm segments an image by first constructing a minimum spanning tree representation of the image and then partitioning the spanning tree into sub-trees representing different homogeneous regions. The spanning tree is partitioned in such a way that the sum of gray-level variations over all partitioned subtrees is minimized under the constraints that each subtree has at least a specified number of pixels and two adjacent subtrees have significantly different ``average`` gray-levels. Two types of noise, transmission errors and Gaussian additive noise. are considered and their effects on the segmentation algorithm are studied. Evaluation results have shown that the segmentation algorithm is robust in the presence of these two types of noise.
A Comprehensive Review of Swarm Optimization Algorithms
2015-01-01
Many swarm optimization algorithms have been introduced since the early 60’s, Evolutionary Programming to the most recent, Grey Wolf Optimization. All of these algorithms have demonstrated their potential to solve many optimization problems. This paper provides an in-depth survey of well-known optimization algorithms. Selected algorithms are briefly explained and compared with each other comprehensively through experiments conducted using thirty well-known benchmark functions. Their advantages and disadvantages are also discussed. A number of statistical tests are then carried out to determine the significant performances. The results indicate the overall advantage of Differential Evolution (DE) and is closely followed by Particle Swarm Optimization (PSO), compared with other considered approaches. PMID:25992655
A comprehensive review of swarm optimization algorithms.
Ab Wahab, Mohd Nadhir; Nefti-Meziani, Samia; Atyabi, Adham
2015-01-01
Many swarm optimization algorithms have been introduced since the early 60's, Evolutionary Programming to the most recent, Grey Wolf Optimization. All of these algorithms have demonstrated their potential to solve many optimization problems. This paper provides an in-depth survey of well-known optimization algorithms. Selected algorithms are briefly explained and compared with each other comprehensively through experiments conducted using thirty well-known benchmark functions. Their advantages and disadvantages are also discussed. A number of statistical tests are then carried out to determine the significant performances. The results indicate the overall advantage of Differential Evolution (DE) and is closely followed by Particle Swarm Optimization (PSO), compared with other considered approaches.
NASA Technical Reports Server (NTRS)
Roelof, Edmond C.; Mauk, Barry H.; Meier, Robert R.
1992-01-01
Scientific requirements for He(+)(304 A) and energetic neutral atom (ENA) magnetospheric imaging, as well as the derived instrumental requirements are presented. Both ENA imaging of the hot plasma and EUV imaging of the cold plasma are highlighted. The question of the accuracy with which physically significant parameters can be extracted from actual images using computerized algorithms is addressed. An example of an ENA image analyzed by means of the Powell minimization algorithm is given. Automated unfolding of global magnetospheric images is also discussed. A Mercator projection of a model INA image is shown.
NASA Astrophysics Data System (ADS)
Roelof, Edmond C.; Mauk, Barry H.; Meier, Robert R.
Scientific requirements for He(+)(304 A) and energetic neutral atom (ENA) magnetospheric imaging, as well as the derived instrumental requirements are presented. Both ENA imaging of the hot plasma and EUV imaging of the cold plasma are highlighted. The question of the accuracy with which physically significant parameters can be extracted from actual images using computerized algorithms is addressed. An example of an ENA image analyzed by means of the Powell minimization algorithm is given. Automated unfolding of global magnetospheric images is also discussed. A Mercator projection of a model INA image is shown.
Advances in Significance Testing for Cluster Detection
NASA Astrophysics Data System (ADS)
Coleman, Deidra Andrea
Over the past two decades, much attention has been given to data driven project goals such as the Human Genome Project and the development of syndromic surveillance systems. A major component of these types of projects is analyzing the abundance of data. Detecting clusters within the data can be beneficial as it can lead to the identification of specified sequences of DNA nucleotides that are related to important biological functions or the locations of epidemics such as disease outbreaks or bioterrorism attacks. Cluster detection techniques require efficient and accurate hypothesis testing procedures. In this dissertation, we improve upon the hypothesis testing procedures for cluster detection by enhancing distributional theory and providing an alternative method for spatial cluster detection using syndromic surveillance data. In Chapter 2, we provide an efficient method to compute the exact distribution of the number and coverage of h-clumps of a collection of words. This method involves defining a Markov chain using a minimal deterministic automaton to reduce the number of states needed for computation. We allow words of the collection to contain other words of the collection making the method more general. We use our method to compute the distributions of the number and coverage of h-clumps in the Chi motif of H. influenza.. In Chapter 3, we provide an efficient algorithm to compute the exact distribution of multiple window discrete scan statistics for higher-order, multi-state Markovian sequences. This algorithm involves defining a Markov chain to efficiently keep track of probabilities needed to compute p-values of the statistic. We use our algorithm to identify cases where the available approximation does not perform well. We also use our algorithm to detect unusual clusters of made free throw shots by National Basketball Association players during the 2009-2010 regular season. In Chapter 4, we give a procedure to detect outbreaks using syndromic
Sampling Within k-Means Algorithm to Cluster Large Datasets
Bejarano, Jeremy; Bose, Koushiki; Brannan, Tyler; Thomas, Anita; Adragni, Kofi; Neerchal, Nagaraj; Ostrouchov, George
2011-08-01
Due to current data collection technology, our ability to gather data has surpassed our ability to analyze it. In particular, k-means, one of the simplest and fastest clustering algorithms, is ill-equipped to handle extremely large datasets on even the most powerful machines. Our new algorithm uses a sample from a dataset to decrease runtime by reducing the amount of data analyzed. We perform a simulation study to compare our sampling based k-means to the standard k-means algorithm by analyzing both the speed and accuracy of the two methods. Results show that our algorithm is significantly more efficient than the existing algorithm with comparable accuracy. Further work on this project might include a more comprehensive study both on more varied test datasets as well as on real weather datasets. This is especially important considering that this preliminary study was performed on rather tame datasets. Also, these datasets should analyze the performance of the algorithm on varied values of k. Lastly, this paper showed that the algorithm was accurate for relatively low sample sizes. We would like to analyze this further to see how accurate the algorithm is for even lower sample sizes. We could find the lowest sample sizes, by manipulating width and confidence level, for which the algorithm would be acceptably accurate. In order for our algorithm to be a success, it needs to meet two benchmarks: match the accuracy of the standard k-means algorithm and significantly reduce runtime. Both goals are accomplished for all six datasets analyzed. However, on datasets of three and four dimension, as the data becomes more difficult to cluster, both algorithms fail to obtain the correct classifications on some trials. Nevertheless, our algorithm consistently matches the performance of the standard algorithm while becoming remarkably more efficient with time. Therefore, we conclude that analysts can use our algorithm, expecting accurate results in considerably less time.
A survey of DNA motif finding algorithms
Das, Modan K; Dai, Ho-Kwok
2007-01-01
Background Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especially the binding sites in deoxyribonucleic acid (DNA) for transcription factors. These binding sites are short DNA segments that are called motifs. Recent advances in genome sequence availability and in high-throughput gene expression analysis technologies have allowed for the development of computational methods for motif finding. As a result, a large number of motif finding algorithms have been implemented and applied to various motif models over the past decade. This survey reviews the latest developments in DNA motif finding algorithms. Results Earlier algorithms use promoter sequences of coregulated genes from single genome and search for statistically overrepresented motifs. Recent algorithms are designed to use phylogenetic footprinting or orthologous sequences and also an integrated approach where promoter sequences of coregulated genes and phylogenetic footprinting are used. All the algorithms studied have been reported to correctly detect the motifs that have been previously detected by laboratory experimental approaches, and some algorithms were able to find novel motifs. However, most of these motif finding algorithms have been shown to work successfully in yeast and other lower organisms, but perform significantly worse in higher organisms. Conclusion Despite considerable efforts to date, DNA motif finding remains a complex challenge for biologists and computer scientists. Researchers have taken many different approaches in developing motif discovery tools and the progress made in this area of research is very encouraging. Performance comparison of different motif finding tools and identification of the best tools have proven to be a difficult task because tools are designed based on algorithms and motif models that are diverse and complex and our incomplete understanding of
Efficient Grammar Induction Algorithm with Parse Forests from Real Corpora
NASA Astrophysics Data System (ADS)
Kurihara, Kenichi; Kameya, Yoshitaka; Sato, Taisuke
The task of inducing grammar structures has received a great deal of attention. The reasons why researchers have studied are different; to use grammar induction as the first stage in building large treebanks or to make up better language models. However, grammar induction has inherent computational complexity. To overcome it, some grammar induction algorithms add new production rules incrementally. They refine the grammar while keeping their computational complexity low. In this paper, we propose a new efficient grammar induction algorithm. Although our algorithm is similar to algorithms which learn a grammar incrementally, our algorithm uses the graphical EM algorithm instead of the Inside-Outside algorithm. We report results of learning experiments in terms of learning speeds. The results show that our algorithm learns a grammar in constant time regardless of the size of the grammar. Since our algorithm decreases syntactic ambiguities in each step, our algorithm reduces required time for learning. This constant-time learning considerably affects learning time for larger grammars. We also reports results of evaluation of criteria to choose nonterminals. Our algorithm refines a grammar based on a nonterminal in each step. Since there can be several criteria to decide which nonterminal is the best, we evaluate them by learning experiments.
Sensor network algorithms and applications.
Trigoni, Niki; Krishnamachari, Bhaskar
2012-01-13
A sensor network is a collection of nodes with processing, communication and sensing capabilities deployed in an area of interest to perform a monitoring task. There has now been about a decade of very active research in the area of sensor networks, with significant accomplishments made in terms of both designing novel algorithms and building exciting new sensing applications. This Theme Issue provides a broad sampling of the central challenges and the contributions that have been made towards addressing these challenges in the field, and illustrates the pervasive and central role of sensor networks in monitoring human activities and the environment.
Kidney-inspired algorithm for optimization problems
NASA Astrophysics Data System (ADS)
Jaddi, Najmeh Sadat; Alvankarian, Jafar; Abdullah, Salwani
2017-01-01
In this paper, a population-based algorithm inspired by the kidney process in the human body is proposed. In this algorithm the solutions are filtered in a rate that is calculated based on the mean of objective functions of all solutions in the current population of each iteration. The filtered solutions as the better solutions are moved to filtered blood and the rest are transferred to waste representing the worse solutions. This is a simulation of the glomerular filtration process in the kidney. The waste solutions are reconsidered in the iterations if after applying a defined movement operator they satisfy the filtration rate, otherwise it is expelled from the waste solutions, simulating the reabsorption and excretion functions of the kidney. In addition, a solution assigned as better solution is secreted if it is not better than the worst solutions simulating the secreting process of blood in the kidney. After placement of all the solutions in the population, the best of them is ranked, the waste and filtered blood are merged to become a new population and the filtration rate is updated. Filtration provides the required exploitation while generating a new solution and reabsorption gives the necessary exploration for the algorithm. The algorithm is assessed by applying it on eight well-known benchmark test functions and compares the results with other algorithms in the literature. The performance of the proposed algorithm is better on seven out of eight test functions when it is compared with the most recent researches in literature. The proposed kidney-inspired algorithm is able to find the global optimum with less function evaluations on six out of eight test functions. A statistical analysis further confirms the ability of this algorithm to produce good-quality results.
A New Component Labelling And Merging Algorithm
NASA Astrophysics Data System (ADS)
Lochovsky, Amelia F.
1987-10-01
Component labelling is an important part of region analysis in image processing. Component labelling consists of assigning labels to pixels in the image such that adjacent pixels are given the same labels. There are various approaches to component labelling. Some require random access to the processed image; some assume special structure of the image such as a quad tree. Algorithms based on sequential scan of the image are attractive to hardware implementation. One method of labelling is based on a fixed size local window which includes the previous line. Due to the fixed size window and the sequential fashion of the labelling process, different branches of the same object may be given different labels and later found to be connected to each other. These labels are con-sidered to be equivalent and must later be collected to correctly represent one single object. This approach can be found in [F,FE,R]. Assume an input binary image of size NxM. Using these labelling algorithms, the number of equivalent pair generated is bounded by O(N*M). The number of distinct labels is also bounded by O(N*M). There is no known algorithm that merge the equivalent label pairs in time linear to the number of pairs, that is in time bounded by O(N*M). We propose a new labelling algorithm which interleaves the labelling with the merging process. The labelling and the merging are combined in one algorithm. Merged label information is kept in an equivalent table which is used to guide the labelling. In general , the algorithm produces fewer equivalent label pairs. The combined labelling and merging algorithm is O(N*M), where NxM is the size of the image. Section II describes the algorithm. Section III gives some examples We discuss implementation issues in section IV and further discussion and conclusion are given in Section V.
Optimisation of nonlinear motion cueing algorithm based on genetic algorithm
NASA Astrophysics Data System (ADS)
Asadi, Houshyar; Mohamed, Shady; Rahim Zadeh, Delpak; Nahavandi, Saeid
2015-04-01
Motion cueing algorithms (MCAs) are playing a significant role in driving simulators, aiming to deliver the most accurate human sensation to the simulator drivers compared with a real vehicle driver, without exceeding the physical limitations of the simulator. This paper provides the optimisation design of an MCA for a vehicle simulator, in order to find the most suitable washout algorithm parameters, while respecting all motion platform physical limitations, and minimising human perception error between real and simulator driver. One of the main limitations of the classical washout filters is that it is attuned by the worst-case scenario tuning method. This is based on trial and error, and is effected by driving and programmers experience, making this the most significant obstacle to full motion platform utilisation. This leads to inflexibility of the structure, production of false cues and makes the resulting simulator fail to suit all circumstances. In addition, the classical method does not take minimisation of human perception error and physical constraints into account. Production of motion cues and the impact of different parameters of classical washout filters on motion cues remain inaccessible for designers for this reason. The aim of this paper is to provide an optimisation method for tuning the MCA parameters, based on nonlinear filtering and genetic algorithms. This is done by taking vestibular sensation error into account between real and simulated cases, as well as main dynamic limitations, tilt coordination and correlation coefficient. Three additional compensatory linear blocks are integrated into the MCA, to be tuned in order to modify the performance of the filters successfully. The proposed optimised MCA is implemented in MATLAB/Simulink software packages. The results generated using the proposed method show increased performance in terms of human sensation, reference shape tracking and exploiting the platform more efficiently without reaching
Evolutionary pattern search algorithms
Hart, W.E.
1995-09-19
This paper defines a class of evolutionary algorithms called evolutionary pattern search algorithms (EPSAs) and analyzes their convergence properties. This class of algorithms is closely related to evolutionary programming, evolutionary strategie and real-coded genetic algorithms. EPSAs are self-adapting systems that modify the step size of the mutation operator in response to the success of previous optimization steps. The rule used to adapt the step size can be used to provide a stationary point convergence theory for EPSAs on any continuous function. This convergence theory is based on an extension of the convergence theory for generalized pattern search methods. An experimental analysis of the performance of EPSAs demonstrates that these algorithms can perform a level of global search that is comparable to that of canonical EAs. We also describe a stopping rule for EPSAs, which reliably terminated near stationary points in our experiments. This is the first stopping rule for any class of EAs that can terminate at a given distance from stationary points.
NASA Technical Reports Server (NTRS)
Dongarra, Jack
1998-01-01
This exploratory study initiated our inquiry into algorithms and applications that would benefit by latency tolerant approach to algorithm building, including the construction of new algorithms where appropriate. In a multithreaded execution, when a processor reaches a point where remote memory access is necessary, the request is sent out on the network and a context--switch occurs to a new thread of computation. This effectively masks a long and unpredictable latency due to remote loads, thereby providing tolerance to remote access latency. We began to develop standards to profile various algorithm and application parameters, such as the degree of parallelism, granularity, precision, instruction set mix, interprocessor communication, latency etc. These tools will continue to develop and evolve as the Information Power Grid environment matures. To provide a richer context for this research, the project also focused on issues of fault-tolerance and computation migration of numerical algorithms and software. During the initial phase we tried to increase our understanding of the bottlenecks in single processor performance. Our work began by developing an approach for the automatic generation and optimization of numerical software for processors with deep memory hierarchies and pipelined functional units. Based on the results we achieved in this study we are planning to study other architectures of interest, including development of cost models, and developing code generators appropriate to these architectures.
Algorithmization in Learning and Instruction.
ERIC Educational Resources Information Center
Landa, L. N.
An introduction to the theory of algorithms reviews the theoretical issues of teaching algorithms, the logical and psychological problems of devising algorithms of identification, and the selection of efficient algorithms; and then relates all of these to the classroom teaching process. It also descirbes some major research on the effectiveness of…
Genetic Algorithms for Digital Quantum Simulations.
Las Heras, U; Alvarez-Rodriguez, U; Solano, E; Sanz, M
2016-06-10
We propose genetic algorithms, which are robust optimization techniques inspired by natural selection, to enhance the versatility of digital quantum simulations. In this sense, we show that genetic algorithms can be employed to increase the fidelity and optimize the resource requirements of digital quantum simulation protocols while adapting naturally to the experimental constraints. Furthermore, this method allows us to reduce not only digital errors but also experimental errors in quantum gates. Indeed, by adding ancillary qubits, we design a modular gate made out of imperfect gates, whose fidelity is larger than the fidelity of any of the constituent gates. Finally, we prove that the proposed modular gates are resilient against different gate errors.
A Parallel Point Matching Algorithm for Landmark Based Image Registration Using Multicore Platform
Yang, Lin; Gong, Leiguang; Zhang, Hong; Nosher, John L.; Foran, David J.
2013-01-01
Point matching is crucial for many computer vision applications. Establishing the correspondence between a large number of data points is a computationally intensive process. Some point matching related applications, such as medical image registration, require real time or near real time performance if applied to critical clinical applications like image assisted surgery. In this paper, we report a new multicore platform based parallel algorithm for fast point matching in the context of landmark based medical image registration. We introduced a non-regular data partition algorithm which utilizes the K-means clustering algorithm to group the landmarks based on the number of available processing cores, which optimize the memory usage and data transfer. We have tested our method using the IBM Cell Broadband Engine (Cell/B.E.) platform. The results demonstrated a significant speed up over its sequential implementation. The proposed data partition and parallelization algorithm, though tested only on one multicore platform, is generic by its design. Therefore the parallel algorithm can be extended to other computing platforms, as well as other point matching related applications. PMID:24308014
NASA Astrophysics Data System (ADS)
Jafari, Hamed; Salmasi, Nasser
2015-04-01
The nurse scheduling problem (NSP) has received a great amount of attention in recent years. In the NSP, the goal is to assign shifts to the nurses in order to satisfy the hospital's demand during the planning horizon by considering different objective functions. In this research, we focus on maximizing the nurses' preferences for working shifts and weekends off by considering several important factors such as hospital's policies, labor laws, governmental regulations, and the status of nurses at the end of the previous planning horizon in one of the largest hospitals in Iran i.e., Milad Hospital. Due to the shortage of available nurses, at first, the minimum total number of required nurses is determined. Then, a mathematical programming model is proposed to solve the problem optimally. Since the proposed research problem is NP-hard, a meta-heuristic algorithm based on simulated annealing (SA) is applied to heuristically solve the problem in a reasonable time. An initial feasible solution generator and several novel neighborhood structures are applied to enhance performance of the SA algorithm. Inspired from our observations in Milad hospital, random test problems are generated to evaluate the performance of the SA algorithm. The results of computational experiments indicate that the applied SA algorithm provides solutions with average percentage gap of 5.49 % compared to the upper bounds obtained from the mathematical model. Moreover, the applied SA algorithm provides significantly better solutions in a reasonable time than the schedules provided by the head nurses.
Tsoi, Y H; Xie, S Q
2011-02-01
The kinematics of the human ankle is commonly modeled as a biaxial hinge joint model. However, significant variations in axis orientations have been found between different individuals and also between different foot configurations. For ankle rehabilitation robots, information regarding the ankle kinematic parameters can be used to estimate the ankle and subtalar joint displacements. This can in turn be used as auxiliary variables in adaptive control schemes to allow modification of the robot stiffness and damping parameters to reduce the forces applied at stiffer foot configurations. Due to the large variations observed in the ankle kinematic parameters, an online identification algorithm is required to provide estimates of the model parameters. An online parameter estimation routine based on the recursive least-squares (RLS) algorithm was therefore developed in this research. An extension of the conventional biaxial ankle kinematic model, which allows variation in axis orientations with different foot configurations had also been developed and utilized in the estimation algorithm. Simulation results showed that use of the extended model in the online algorithm is effective in capturing the foot orientation of a biaxial ankle model with variable joint axis orientations. Experimental results had also shown that a modified RLS algorithm that penalizes a deviation of model parameters from their nominal values can be used to obtain more realistic parameter estimates while maintaining a level of estimation accuracy comparable to that of the conventional RLS routine.
An Example-Based Super-Resolution Algorithm for Selfie Images.
William, Jino Hans; Venkateswaran, N; Narayanan, Srinath; Ramachandran, Sandeep
2016-01-01
A selfie is typically a self-portrait captured using the front camera of a smartphone. Most state-of-the-art smartphones are equipped with a high-resolution (HR) rear camera and a low-resolution (LR) front camera. As selfies are captured by front camera with limited pixel resolution, the fine details in it are explicitly missed. This paper aims to improve the resolution of selfies by exploiting the fine details in HR images captured by rear camera using an example-based super-resolution (SR) algorithm. HR images captured by rear camera carry significant fine details and are used as an exemplar to train an optimal matrix-value regression (MVR) operator. The MVR operator serves as an image-pair priori which learns the correspondence between the LR-HR patch-pairs and is effectively used to super-resolve LR selfie images. The proposed MVR algorithm avoids vectorization of image patch-pairs and preserves image-level information during both learning and recovering process. The proposed algorithm is evaluated for its efficiency and effectiveness both qualitatively and quantitatively with other state-of-the-art SR algorithms. The results validate that the proposed algorithm is efficient as it requires less than 3 seconds to super-resolve LR selfie and is effective as it preserves sharp details without introducing any counterfeit fine details.
Fast algorithm for scaling analysis with higher-order detrending moving average method
NASA Astrophysics Data System (ADS)
Tsujimoto, Yutaka; Miki, Yuki; Shimatani, Satoshi; Kiyono, Ken
2016-05-01
Among scaling analysis methods based on the root-mean-square deviation from the estimated trend, it has been demonstrated that centered detrending moving average (DMA) analysis with a simple moving average has good performance when characterizing long-range correlation or fractal scaling behavior. Furthermore, higher-order DMA has also been proposed; it is shown to have better detrending capabilities, removing higher-order polynomial trends than original DMA. However, a straightforward implementation of higher-order DMA requires a very high computational cost, which would prevent practical use of this method. To solve this issue, in this study, we introduce a fast algorithm for higher-order DMA, which consists of two techniques: (1) parallel translation of moving averaging windows by a fixed interval; (2) recurrence formulas for the calculation of summations. Our algorithm can significantly reduce computational cost. Monte Carlo experiments show that the computational time of our algorithm is approximately proportional to the data length, although that of the conventional algorithm is proportional to the square of the data length. The efficiency of our algorithm is also shown by a systematic study of the performance of higher-order DMA, such as the range of detectable scaling exponents and detrending capability for removing polynomial trends. In addition, through the analysis of heart-rate variability time series, we discuss possible applications of higher-order DMA.
NASA Astrophysics Data System (ADS)
Sohrabi, Foad; Davidson, Timothy N.
2016-06-01
We consider the problem of power allocation for the single-cell multi-user (MU) multiple-input single-output (MISO) downlink with quality-of-service (QoS) constraints. The base station acquires an estimate of the channels and, for a given beamforming structure, designs the power allocation so as to minimize the total transmission power required to ensure that target signal-to-interference-and-noise ratios at the receivers are met, subject to a specified outage probability. We consider scenarios in which the errors in the base station's channel estimates can be modelled as being zero-mean and Gaussian. Such a model is particularly suitable for time division duplex (TDD) systems with quasi-static channels, in which the base station estimates the channel during the uplink phase. Under that model, we employ a precise deterministic characterization of the outage probability to transform the chance-constrained formulation to a deterministic one. Although that deterministic formulation is not convex, we develop a coordinate descent algorithm that can be shown to converge to a globally optimal solution when the starting point is feasible. Insight into the structure of the deterministic formulation yields approximations that result in coordinate update algorithms with good performance and significantly lower computational cost. The proposed algorithms provide better performance than existing robust power loading algorithms that are based on tractable conservative approximations, and can even provide better performance than robust precoding algorithms based on such approximations.
An Example-Based Super-Resolution Algorithm for Selfie Images
William, Jino Hans; Venkateswaran, N.; Narayanan, Srinath; Ramachandran, Sandeep
2016-01-01
A selfie is typically a self-portrait captured using the front camera of a smartphone. Most state-of-the-art smartphones are equipped with a high-resolution (HR) rear camera and a low-resolution (LR) front camera. As selfies are captured by front camera with limited pixel resolution, the fine details in it are explicitly missed. This paper aims to improve the resolution of selfies by exploiting the fine details in HR images captured by rear camera using an example-based super-resolution (SR) algorithm. HR images captured by rear camera carry significant fine details and are used as an exemplar to train an optimal matrix-value regression (MVR) operator. The MVR operator serves as an image-pair priori which learns the correspondence between the LR-HR patch-pairs and is effectively used to super-resolve LR selfie images. The proposed MVR algorithm avoids vectorization of image patch-pairs and preserves image-level information during both learning and recovering process. The proposed algorithm is evaluated for its efficiency and effectiveness both qualitatively and quantitatively with other state-of-the-art SR algorithms. The results validate that the proposed algorithm is efficient as it requires less than 3 seconds to super-resolve LR selfie and is effective as it preserves sharp details without introducing any counterfeit fine details. PMID:27064500
Li, Jing; Sun, Yi; Zhu, Peiping
2013-08-21
Differential phase-contrast computed tomography (DPC-CT) reconstruction problems are usually solved by using parallel-, fan- or cone-beam algorithms. For rod-shaped objects, the x-ray beams cannot recover all the slices of the sample at the same time. Thus, if a rod-shaped sample is required to be reconstructed by the above algorithms, one should alternately perform translation and rotation on this sample, which leads to lower efficiency. The helical cone-beam CT may significantly improve scanning efficiency for rod-shaped objects over other algorithms. In this paper, we propose a theoretically exact filter-backprojection algorithm for helical cone-beam DPC-CT, which can be applied to reconstruct the refractive index decrement distribution of the samples directly from two-dimensional differential phase-contrast images. Numerical simulations are conducted to verify the proposed algorithm. Our work provides a potential solution for inspecting the rod-shaped samples using DPC-CT, which may be applicable with the evolution of DPC-CT equipments.
Acceleration of the Smith-Waterman algorithm using single and multiple graphics processors
NASA Astrophysics Data System (ADS)
Khajeh-Saeed, Ali; Poole, Stephen; Blair Perot, J.
2010-06-01
Finding regions of similarity between two very long data streams is a computationally intensive problem referred to as sequence alignment. Alignment algorithms must allow for imperfect sequence matching with different starting locations and some gaps and errors between the two data sequences. Perhaps the most well known application of sequence matching is the testing of DNA or protein sequences against genome databases. The Smith-Waterman algorithm is a method for precisely characterizing how well two sequences can be aligned and for determining the optimal alignment of those two sequences. Like many applications in computational science, the Smith-Waterman algorithm is constrained by the memory access speed and can be accelerated significantly by using graphics processors (GPUs) as the compute engine. In this work we show that effective use of the GPU requires a novel reformulation of the Smith-Waterman algorithm. The performance of this new version of the algorithm is demonstrated using the SSCA#1 (Bioinformatics) benchmark running on one GPU and on up to four GPUs executing in parallel. The results indicate that for large problems a single GPU is up to 45 times faster than a CPU for this application, and the parallel implementation shows linear speed up on up to 4 GPUs.
A Fast Sphere Decoding Algorithm for Space-Frequency Block Codes
NASA Astrophysics Data System (ADS)
Safar, Zoltan; Su, Weifeng; Liu, K. J. Ray
2006-12-01
The recently proposed space-frequency-coded MIMO-OFDM systems have promised considerable performance improvement over single-antenna systems. However, in order to make multiantenna OFDM systems an attractive choice for practical applications, implementation issues such as decoding complexity must be addressed successfully. In this paper, we propose a computationally efficient decoding algorithm for space-frequency block codes. The central part of the algorithm is a modulation-independent sphere decoding framework formulated in the complex domain. We develop three decoding approaches: a modulation-independent approach applicable to any memoryless modulation method, a QAM-specific and a PSK-specific fast decoding algorithm performing nearest-neighbor signal point search. The computational complexity of the algorithms is investigated via both analysis and simulation. The simulation results demonstrate that the proposed algorithm can significantly reduce the decoding complexity. We observe up to 75% reduction in the required FLOP count per code block compared to previously existing methods without noticeable performance degradation.
Description of the AILS Alerting Algorithm
NASA Technical Reports Server (NTRS)
Samanant, Paul; Jackson, Mike
2000-01-01
This document provides a complete description of the Airborne Information for Lateral Spacing (AILS) alerting algorithms. The purpose of AILS is to provide separation assurance between aircraft during simultaneous approaches to closely spaced parallel runways. AILS will allow independent approaches to be flown in such situations where dependent approaches were previously required (typically under Instrument Meteorological Conditions (IMC)). This is achieved by providing multiple levels of alerting for pairs of aircraft that are in parallel approach situations. This document#s scope is comprehensive and covers everything from general overviews, definitions, and concepts down to algorithmic elements and equations. The entire algorithm is presented in complete and detailed pseudo-code format. This can be used by software programmers to program AILS into a software language. Additional supporting information is provided in the form of coordinate frame definitions, data requirements, calling requirements as well as all necessary pre-processing and post-processing requirements. This is important and required information for the implementation of AILS into an analysis, a simulation, or a real-time system.
Region counting algorithm based on region labeling automaton
NASA Astrophysics Data System (ADS)
Yang, Sudi; Gu, Guoqing
2007-12-01
Region counting is a conception in computer graphics and image analysis, and it has many applications in medical area recently. The existing region-counting algorithms are almost based on filling method. Although filling algorithm has been improved well, the speed of these algorithms used to count regions is not satisfied. A region counting algorithm based on region labeling automaton is proposed in this paper. By tracing the boundaries of the regions, the number of the region can be obtained fast. And the proposed method was found to be fastest and requiring less memory.
An Image Encryption Algorithm Based on Information Hiding
NASA Astrophysics Data System (ADS)
Ge, Xin; Lu, Bin; Liu, Fenlin; Gong, Daofu
Aiming at resolving the conflict between security and efficiency in the design of chaotic image encryption algorithms, an image encryption algorithm based on information hiding is proposed based on the “one-time pad” idea. A random parameter is introduced to ensure a different keystream for each encryption, which has the characteristics of “one-time pad”, improving the security of the algorithm rapidly without significant increase in algorithm complexity. The random parameter is embedded into the ciphered image with information hiding technology, which avoids negotiation for its transport and makes the application of the algorithm easier. Algorithm analysis and experiments show that the algorithm is secure against chosen plaintext attack, differential attack and divide-and-conquer attack, and has good statistical properties in ciphered images.
Power spectral estimation algorithms
NASA Technical Reports Server (NTRS)
Bhatia, Manjit S.
1989-01-01
Algorithms to estimate the power spectrum using Maximum Entropy Methods were developed. These algorithms were coded in FORTRAN 77 and were implemented on the VAX 780. The important considerations in this analysis are: (1) resolution, i.e., how close in frequency two spectral components can be spaced and still be identified; (2) dynamic range, i.e., how small a spectral peak can be, relative to the largest, and still be observed in the spectra; and (3) variance, i.e., how accurate the estimate of the spectra is to the actual spectra. The application of the algorithms based on Maximum Entropy Methods to a variety of data shows that these criteria are met quite well. Additional work in this direction would help confirm the findings. All of the software developed was turned over to the technical monitor. A copy of a typical program is included. Some of the actual data and graphs used on this data are also included.
Optical rate sensor algorithms
NASA Technical Reports Server (NTRS)
Uhde-Lacovara, Jo A.
1989-01-01
Optical sensors, in particular Charge Coupled Device (CCD) arrays, will be used on Space Station to track stars in order to provide inertial attitude reference. Algorithms are presented to derive attitude rate from the optical sensors. The first algorithm is a recursive differentiator. A variance reduction factor (VRF) of 0.0228 was achieved with a rise time of 10 samples. A VRF of 0.2522 gives a rise time of 4 samples. The second algorithm is based on the direct manipulation of the pixel intensity outputs of the sensor. In 1-dimensional simulations, the derived rate was with 0.07 percent of the actual rate in the presence of additive Gaussian noise with a signal to noise ratio of 60 dB.
Kernel Affine Projection Algorithms
NASA Astrophysics Data System (ADS)
Liu, Weifeng; Príncipe, José C.
2008-12-01
The combination of the famed kernel trick and affine projection algorithms (APAs) yields powerful nonlinear extensions, named collectively here, KAPA. This paper is a follow-up study of the recently introduced kernel least-mean-square algorithm (KLMS). KAPA inherits the simplicity and online nature of KLMS while reducing its gradient noise, boosting performance. More interestingly, it provides a unifying model for several neural network techniques, including kernel least-mean-square algorithms, kernel adaline, sliding-window kernel recursive-least squares (KRLS), and regularization networks. Therefore, many insights can be gained into the basic relations among them and the tradeoff between computation complexity and performance. Several simulations illustrate its wide applicability.
Research on Formation of Microsatellite Communication with Genetic Algorithm
Wu, Guoqiang; Bai, Yuguang; Sun, Zhaowei
2013-01-01
For the formation of three microsatellites which fly in the same orbit and perform three-dimensional solid mapping for terra, this paper proposes an optimizing design method of space circular formation order based on improved generic algorithm and provides an intersatellite direct spread spectrum communication system. The calculating equation of LEO formation flying satellite intersatellite links is guided by the special requirements of formation-flying microsatellite intersatellite links, and the transmitter power is also confirmed throughout the simulation. The method of space circular formation order optimizing design based on improved generic algorithm is given, and it can keep formation order steady for a long time under various absorb impetus. The intersatellite direct spread spectrum communication system is also provided. It can be found that, when the distance is 1 km and the data rate is 1 Mbps, the input wave matches preferably with the output wave. And LDPC code can improve the communication performance. The correct capability of (512, 256) LDPC code is better than (2, 1, 7) convolution code, distinctively. The design system can satisfy the communication requirements of microsatellites. So, the presented method provides a significant theory foundation for formation-flying and intersatellite communication. PMID:24078796
Research on formation of microsatellite communication with genetic algorithm.
Wu, Guoqiang; Bai, Yuguang; Sun, Zhaowei
2013-01-01
For the formation of three microsatellites which fly in the same orbit and perform three-dimensional solid mapping for terra, this paper proposes an optimizing design method of space circular formation order based on improved generic algorithm and provides an intersatellite direct spread spectrum communication system. The calculating equation of LEO formation flying satellite intersatellite links is guided by the special requirements of formation-flying microsatellite intersatellite links, and the transmitter power is also confirmed throughout the simulation. The method of space circular formation order optimizing design based on improved generic algorithm is given, and it can keep formation order steady for a long time under various absorb impetus. The intersatellite direct spread spectrum communication system is also provided. It can be found that, when the distance is 1 km and the data rate is 1 Mbps, the input wave matches preferably with the output wave. And LDPC code can improve the communication performance. The correct capability of (512, 256) LDPC code is better than (2, 1, 7) convolution code, distinctively. The design system can satisfy the communication requirements of microsatellites. So, the presented method provides a significant theory foundation for formation-flying and intersatellite communication.
Khan, Rao F. Villarreal-Barajas, Eduardo; Lau, Harold; Liu, Hong-Wei
2014-04-01
Stereotactic body radiotherapy (SBRT) is a curative regimen that uses hypofractionated radiation-absorbed dose to achieve a high degree of local control in early stage non–small cell lung cancer (NSCLC). In the presence of heterogeneities, the dose calculation for the lungs becomes challenging. We have evaluated the dosimetric effect of the recently introduced advanced dose-calculation algorithm, Acuros XB (AXB), for SBRT of NSCLC. A total of 97 patients with early-stage lung cancer who underwent SBRT at our cancer center during last 4 years were included. Initial clinical plans were created in Aria Eclipse version 8.9 or prior, using 6 to 10 fields with 6-MV beams, and dose was calculated using the anisotropic analytic algorithm (AAA) as implemented in Eclipse treatment planning system. The clinical plans were recalculated in Aria Eclipse 11.0.21 using both AAA and AXB algorithms. Both sets of plans were normalized to the same prescription point at the center of mass of the target. A secondary monitor unit (MU) calculation was performed using commercial program RadCalc for all of the fields. For the planning target volumes ranging from 19 to 375 cm{sup 3}, a comparison of MUs was performed for both set of algorithms on field and plan basis. In total, variation of MUs for 677 treatment fields was investigated in terms of equivalent depth and the equivalent square of the field. Overall, MUs required by AXB to deliver the prescribed dose are on an average 2% higher than AAA. Using a 2-tailed paired t-test, the MUs from the 2 algorithms were found to be significantly different (p < 0.001). The secondary independent MU calculator RadCalc underestimates the required MUs (on an average by 4% to 5%) in the lung relative to either of the 2 dose algorithms.
Graff, Mario; Poli, Riccardo; Flores, Juan J
2013-01-01
Modeling the behavior of algorithms is the realm of evolutionary algorithm theory. From a practitioner's point of view, theory must provide some guidelines regarding which algorithm/parameters to use in order to solve a particular problem. Unfortunately, most theoretical models of evolutionary algorithms are difficult to apply to realistic situations. However, in recent work (Graff and Poli, 2008, 2010), where we developed a method to practically estimate the performance of evolutionary program-induction algorithms (EPAs), we started addressing this issue. The method was quite general; however, it suffered from some limitations: it required the identification of a set of reference problems, it required hand picking a distance measure in each particular domain, and the resulting models were opaque, typically being linear combinations of 100 features or more. In this paper, we propose a significant improvement of this technique that overcomes the three limitations of our previous method. We achieve this through the use of a novel set of features for assessing problem difficulty for EPAs which are very general, essentially based on the notion of finite difference. To show the capabilities or our technique and to compare it with our previous performance models, we create models for the same two important classes of problems-symbolic regression on rational functions and Boolean function induction-used in our previous work. We model a variety of EPAs. The comparison showed that for the majority of the algorithms and problem classes, the new method produced much simpler and more accurate models than before. To further illustrate the practicality of the technique and its generality (beyond EPAs), we have also used it to predict the performance of both autoregressive models and EPAs on the problem of wind speed forecasting, obtaining simpler and more accurate models that outperform in all cases our previous performance models.
Highly Scalable Matching Pursuit Signal Decomposition Algorithm
NASA Technical Reports Server (NTRS)
Christensen, Daniel; Das, Santanu; Srivastava, Ashok N.
2009-01-01
Matching Pursuit Decomposition (MPD) is a powerful iterative algorithm for signal decomposition and feature extraction. MPD decomposes any signal into linear combinations of its dictionary elements or atoms . A best fit atom from an arbitrarily defined dictionary is determined through cross-correlation. The selected atom is subtracted from the signal and this procedure is repeated on the residual in the subsequent iterations until a stopping criterion is met. The reconstructed signal reveals the waveform structure of the original signal. However, a sufficiently large dictionary is required for an accurate reconstruction; this in return increases the computational burden of the algorithm, thus limiting its applicability and level of adoption. The purpose of this research is to improve the scalability and performance of the classical MPD algorithm. Correlation thresholds were defined to prune insignificant atoms from the dictionary. The Coarse-Fine Grids and Multiple Atom Extraction techniques were proposed to decrease the computational burden of the algorithm. The Coarse-Fine Grids method enabled the approximation and refinement of the parameters for the best fit atom. The ability to extract multiple atoms within a single iteration enhanced the effectiveness and efficiency of each iteration. These improvements were implemented to produce an improved Matching Pursuit Decomposition algorithm entitled MPD++. Disparate signal decomposition applications may require a particular emphasis of accuracy or computational efficiency. The prominence of the key signal features required for the proper signal classification dictates the level of accuracy necessary in the decomposition. The MPD++ algorithm may be easily adapted to accommodate the imposed requirements. Certain feature extraction applications may require rapid signal decomposition. The full potential of MPD++ may be utilized to produce incredible performance gains while extracting only slightly less energy than the
Highly parallel consistent labeling algorithm suitable for optoelectronic implementation.
Marsden, G C; Kiamilev, F; Esener, S; Lee, S H
1991-01-10
Constraint satisfaction problems require a search through a large set of possibilities. Consistent labeling is a method by which search spaces can be drastically reduced. We present a highly parallel consistent labeling algorithm, which achieves strong k-consistency for any value k and which can include higher-order constraints. The algorithm uses vector outer product, matrix summation, and matrix intersection operations. These operations require local computation with global communication and, therefore, are well suited to a optoelectronic implementation.
Klein, Daniel J; Baym, Michael; Eckhoff, Philip
2014-01-01
Decision makers in epidemiology and other disciplines are faced with the daunting challenge of designing interventions that will be successful with high probability and robust against a multitude of uncertainties. To facilitate the decision making process in the context of a goal-oriented objective (e.g., eradicate polio by [Formula: see text]), stochastic models can be used to map the probability of achieving the goal as a function of parameters. Each run of a stochastic model can be viewed as a Bernoulli trial in which "success" is returned if and only if the goal is achieved in simulation. However, each run can take a significant amount of time to complete, and many replicates are required to characterize each point in parameter space, so specialized algorithms are required to locate desirable interventions. To address this need, we present the Separatrix Algorithm, which strategically locates parameter combinations that are expected to achieve the goal with a user-specified probability of success (e.g. 95%). Technically, the algorithm iteratively combines density-corrected binary kernel regression with a novel information-gathering experiment design to produce results that are asymptotically correct and work well in practice. The Separatrix Algorithm is demonstrated on several test problems, and on a detailed individual-based simulation of malaria.
Parallel Algorithms and Patterns
Robey, Robert W.
2016-06-16
This is a powerpoint presentation on parallel algorithms and patterns. A parallel algorithm is a well-defined, step-by-step computational procedure that emphasizes concurrency to solve a problem. Examples of problems include: Sorting, searching, optimization, matrix operations. A parallel pattern is a computational step in a sequence of independent, potentially concurrent operations that occurs in diverse scenarios with some frequency. Examples are: Reductions, prefix scans, ghost cell updates. We only touch on parallel patterns in this presentation. It really deserves its own detailed discussion which Gabe Rockefeller would like to develop.
Improved Chaff Solution Algorithm
2009-03-01
Programme de démonstration de technologies (PDT) sur l’intégration de capteurs et de systèmes d’armes embarqués (SISWS), un algorithme a été élaboré...technologies (PDT) sur l’intégration de capteurs et de systèmes d’armes embarqués (SISWS), un algorithme a été élaboré pour déterminer automatiquement...0Z4 2. SECURITY CLASSIFICATION (Overall security classification of the document including special warning terms if applicable .) UNCLASSIFIED
Finding Statistically Significant Communities in Networks
Lancichinetti, Andrea; Radicchi, Filippo; Ramasco, José J.; Fortunato, Santo
2011-01-01
Community structure is one of the main structural features of networks, revealing both their internal organization and the similarity of their elementary units. Despite the large variety of methods proposed to detect communities in graphs, there is a big need for multi-purpose techniques, able to handle different types of datasets and the subtleties of community structure. In this paper we present OSLOM (Order Statistics Local Optimization Method), the first method capable to detect clusters in networks accounting for edge directions, edge weights, overlapping communities, hierarchies and community dynamics. It is based on the local optimization of a fitness function expressing the statistical significance of clusters with respect to random fluctuations, which is estimated with tools of Extreme and Order Statistics. OSLOM can be used alone or as a refinement procedure of partitions/covers delivered by other techniques. We have also implemented sequential algorithms combining OSLOM with other fast techniques, so that the community structure of very large networks can be uncovered. Our method has a comparable performance as the best existing algorithms on artificial benchmark graphs. Several applications on real networks are shown as well. OSLOM is implemented in a freely available software (http://www.oslom.org), and we believe it will be a valuable tool in the analysis of networks. PMID:21559480
A Polynomial Time, Numerically Stable Integer Relation Algorithm
NASA Technical Reports Server (NTRS)
Ferguson, Helaman R. P.; Bailey, Daivd H.; Kutler, Paul (Technical Monitor)
1998-01-01
Let x = (x1, x2...,xn be a vector of real numbers. X is said to possess an integer relation if there exist integers a(sub i) not all zero such that a1x1 + a2x2 + ... a(sub n)Xn = 0. Beginning in 1977 several algorithms (with proofs) have been discovered to recover the a(sub i) given x. The most efficient of these existing integer relation algorithms (in terms of run time and the precision required of the input) has the drawback of being very unstable numerically. It often requires a numeric precision level in the thousands of digits to reliably recover relations in modest-sized test problems. We present here a new algorithm for finding integer relations, which we have named the "PSLQ" algorithm. It is proved in this paper that the PSLQ algorithm terminates with a relation in a number of iterations that is bounded by a polynomial in it. Because this algorithm employs a numerically stable matrix reduction procedure, it is free from the numerical difficulties, that plague other integer relation algorithms. Furthermore, its stability admits an efficient implementation with lower run times oil average than other algorithms currently in Use. Finally, this stability can be used to prove that relation bounds obtained from computer runs using this algorithm are numerically accurate.
Ligand Identification Scoring Algorithm (LISA)
Zheng, Zheng; Merz, Kenneth M.
2011-01-01
A central problem in de novo drug design is determining the binding affinity of a ligand with a receptor. A new scoring algorithm is presented that estimates the binding affinity of a protein-ligand complex given a three-dimensional structure. The method, LISA (Ligand Identification Scoring Algorithm), uses an empirical scoring function to describe the binding free energy. Interaction terms have been designed to account for van der Waals (VDW) contacts, hydrogen bonding, desolvation effects and metal chelation to model the dissociation equilibrium constants using a linear model. Atom types have been introduced to differentiate the parameters for VDW, H-bonding interactions and metal chelation between different atom pairs. A training set of 492 protein-ligand complexes was selected for the fitting process. Different test sets have been examined to evaluate its ability to predict experimentally measured binding affinities. By comparing with other well known scoring functions, the results show that LISA has advantages over many existing scoring functions in simulating protein-ligand binding affinity, especially metalloprotein-ligand binding affinity. Artificial Neural Network (ANN) was also used in order to demonstrate that the energy terms in LISA are well designed and do not require extra cross terms. PMID:21561101
Filter selection using genetic algorithms
NASA Astrophysics Data System (ADS)
Patel, Devesh
1996-03-01
Convolution operators act as matched filters for certain types of variations found in images and have been extensively used in the analysis of images. However, filtering through a bank of N filters generates N filtered images, consequently increasing the amount of data considerably. Moreover, not all these filters have the same discriminatory capabilities for the individual images, thus making the task of any classifier difficult. In this paper, we use genetic algorithms to select a subset of relevant filters. Genetic algorithms represent a class of adaptive search techniques where the processes are similar to natural selection of biological evolution. The steady state model (GENITOR) has been used in this paper. The reduction of filters improves the performance of the classifier (which in this paper is the multi-layer perceptron neural network) and furthermore reduces the computational requirement. In this study we use the Laws filters which were proposed for the analysis of texture images. Our aim is to recognize the different textures on the images using the reduced filter set.
Ligand Identification Scoring Algorithm (LISA).
Zheng, Zheng; Merz, Kenneth M
2011-06-27
A central problem in de novo drug design is determining the binding affinity of a ligand with a receptor. A new scoring algorithm is presented that estimates the binding affinity of a protein-ligand complex given a three-dimensional structure. The method, LISA (Ligand Identification Scoring Algorithm), uses an empirical scoring function to describe the binding free energy. Interaction terms have been designed to account for van der Waals (VDW) contacts, hydrogen bonding, desolvation effects, and metal chelation to model the dissociation equilibrium constants using a linear model. Atom types have been introduced to differentiate the parameters for VDW, H-bonding interactions, and metal chelation between different atom pairs. A training set of 492 protein-ligand complexes was selected for the fitting process. Different test sets have been examined to evaluate its ability to predict experimentally measured binding affinities. By comparing with other well-known scoring functions, the results show that LISA has advantages over many existing scoring functions in simulating protein-ligand binding affinity, especially metalloprotein-ligand binding affinity. Artificial Neural Network (ANN) was also used in order to demonstrate that the energy terms in LISA are well designed and do not require extra cross terms.
Efficient Homotopy Continuation Algorithms with Application to Computational Fluid Dynamics
NASA Astrophysics Data System (ADS)
Brown, David A.
New homotopy continuation algorithms are developed and applied to a parallel implicit finite-difference Newton-Krylov-Schur external aerodynamic flow solver for the compressible Euler, Navier-Stokes, and Reynolds-averaged Navier-Stokes equations with the Spalart-Allmaras one-equation turbulence model. Many new analysis tools, calculations, and numerical algorithms are presented for the study and design of efficient and robust homotopy continuation algorithms applicable to solving very large and sparse nonlinear systems of equations. Several specific homotopies are presented and studied and a methodology is presented for assessing the suitability of specific homotopies for homotopy continuation. . A new class of homotopy continuation algorithms, referred to as monolithic homotopy continuation algorithms, is developed. These algorithms differ from classical predictor-corrector algorithms by combining the predictor and corrector stages into a single update, significantly reducing the amount of computation and avoiding wasted computational effort resulting from over-solving in the corrector phase. The new algorithms are also simpler from a user perspective, with fewer input parameters, which also improves the user's ability to choose effective parameters on the first flow solve attempt. Conditional convergence is proved analytically and studied numerically for the new algorithms. The performance of a fully-implicit monolithic homotopy continuation algorithm is evaluated for several inviscid, laminar, and turbulent flows over NACA 0012 airfoils and ONERA M6 wings. The monolithic algorithm is demonstrated to be more efficient than the predictor-corrector algorithm for all applications investigated. It is also demonstrated to be more efficient than the widely-used pseudo-transient continuation algorithm for all inviscid and laminar cases investigated, and good performance scaling with grid refinement is demonstrated for the inviscid cases. Performance is also demonstrated
Evolutionary algorithm for vehicle driving cycle generation.
Perhinschi, Mario G; Marlowe, Christopher; Tamayo, Sergio; Tu, Jun; Wayne, W Scott
2011-09-01
Modeling transit bus emissions and fuel economy requires a large amount of experimental data over wide ranges of operational conditions. Chassis dynamometer tests are typically performed using representative driving cycles defined based on vehicle instantaneous speed as sequences of "microtrips", which are intervals between consecutive vehicle stops. Overall significant parameters of the driving cycle, such as average speed, stops per mile, kinetic intensity, and others, are used as independent variables in the modeling process. Performing tests at all the necessary combinations of parameters is expensive and time consuming. In this paper, a methodology is proposed for building driving cycles at prescribed independent variable values using experimental data through the concatenation of "microtrips" isolated from a limited number of standard chassis dynamometer test cycles. The selection of the adequate "microtrips" is achieved through a customized evolutionary algorithm. The genetic representation uses microtrip definitions as genes. Specific mutation, crossover, and karyotype alteration operators have been defined. The Roulette-Wheel selection technique with elitist strategy drives the optimization process, which consists of minimizing the errors to desired overall cycle parameters. This utility is part of the Integrated Bus Information System developed at West Virginia University.
A hierarchical exact accelerated stochastic simulation algorithm
NASA Astrophysics Data System (ADS)
Orendorff, David; Mjolsness, Eric
2012-12-01
A new algorithm, "HiER-leap" (hierarchical exact reaction-leaping), is derived which improves on the computational properties of the ER-leap algorithm for exact accelerated simulation of stochastic chemical kinetics. Unlike ER-leap, HiER-leap utilizes a hierarchical or divide-and-conquer organization of reaction channels into tightly coupled "blocks" and is thereby able to speed up systems with many reaction channels. Like ER-leap, HiER-leap is based on the use of upper and lower bounds on the reaction propensities to define a rejection sampling algorithm with inexpensive early rejection and acceptance steps. But in HiER-leap, large portions of intra-block sampling may be done in parallel. An accept/reject step is used to synchronize across blocks. This method scales well when many reaction channels are present and has desirable asymptotic properties. The algorithm is exact, parallelizable and achieves a significant speedup over the stochastic simulation algorithm and ER-leap on certain problems. This algorithm offers a potentially important step towards efficient in silico modeling of entire organisms.
TrackEye tracking algorithm characterization
NASA Astrophysics Data System (ADS)
Valley, Michael T.; Shields, Robert W.; Reed, Jack M.
2004-10-01
TrackEye is a film digitization and target tracking system that offers the potential for quantitatively measuring the dynamic state variables (e.g., absolute and relative position, orientation, linear and angular velocity/acceleration, spin rate, trajectory, angle of attack, etc.) for moving objects using captured single or dual view image sequences. At the heart of the system is a set of tracking algorithms that automatically find and quantify the location of user selected image details such as natural test article features or passive fiducials that have been applied to cooperative test articles. This image position data is converted into real world coordinates and rates with user specified information such as the image scale and frame rate. Though tracking methods such as correlation algorithms are typically robust by nature, the accuracy and suitability of each TrackEye tracking algorithm is in general unknown even under good imaging conditions. The challenges of optimal algorithm selection and algorithm performance/measurement uncertainty are even more significant for long range tracking of high-speed targets where temporally varying atmospheric effects degrade the imagery. This paper will present the preliminary results from a controlled test sequence used to characterize the performance of the TrackEye tracking algorithm suite.
TrackEye tracking algorithm characterization.
Reed, Jack W.; Shields, Rob W; Valley, Michael T.
2004-08-01
TrackEye is a film digitization and target tracking system that offers the potential for quantitatively measuring the dynamic state variables (e.g., absolute and relative position, orientation, linear and angular velocity/acceleration, spin rate, trajectory, angle of attack, etc.) for moving objects using captured single or dual view image sequences. At the heart of the system is a set of tracking algorithms that automatically find and quantify the location of user selected image details such as natural test article features or passive fiducials that have been applied to cooperative test articles. This image position data is converted into real world coordinates and rates with user specified information such as the image scale and frame rate. Though tracking methods such as correlation algorithms are typically robust by nature, the accuracy and suitability of each TrackEye tracking algorithm is in general unknown even under good imaging conditions. The challenges of optimal algorithm selection and algorithm performance/measurement uncertainty are even more significant for long range tracking of high-speed targets where temporally varying atmospheric effects degrade the imagery. This paper will present the preliminary results from a controlled test sequence used to characterize the performance of the TrackEye tracking algorithm suite.
An Impact-Location Estimation Algorithm for Subsonic Uninhabited Aircraft
NASA Technical Reports Server (NTRS)
Bauer, Jeffrey E.; Teets, Edward
1997-01-01
An impact-location estimation algorithm is being used at the NASA Dryden Flight Research Center to support range safety for uninhabited aerial vehicle flight tests. The algorithm computes an impact location based on the descent rate, mass, and altitude of the vehicle and current wind information. The predicted impact location is continuously displayed on the range safety officer's moving map display so that the flightpath of the vehicle can be routed to avoid ground assets if the flight must be terminated. The algorithm easily adapts to different vehicle termination techniques and has been shown to be accurate to the extent required to support range safety for subsonic uninhabited aerial vehicles. This paper describes how the algorithm functions, how the algorithm is used at NASA Dryden, and how various termination techniques are handled by the algorithm. Other approaches to predicting the impact location and the reasons why they were not selected for real-time implementation are also discussed.
SeqCompress: an algorithm for biological sequence compression.
Sardaraz, Muhammad; Tahir, Muhammad; Ikram, Ataul Aziz; Bajwa, Hassan
2014-10-01
The growth of Next Generation Sequencing technologies presents significant research challenges, specifically to design bioinformatics tools that handle massive amount of data efficiently. Biological sequence data storage cost has become a noticeable proportion of total cost in the generation and analysis. Particularly increase in DNA sequencing rate is significantly outstripping the rate of increase in disk storage capacity, which may go beyond the limit of storage capacity. It is essential to develop algorithms that handle large data sets via better memory management. This article presents a DNA sequence compression algorithm SeqCompress that copes with the space complexity of biological sequences. The algorithm is based on lossless data compression and uses statistical model as well as arithmetic coding to compress DNA sequences. The proposed algorithm is compared with recent specialized compression tools for biological sequences. Experimental results show that proposed algorithm has better compression gain as compared to other existing algorithms.
Turbopump Performance Improved by Evolutionary Algorithms
NASA Technical Reports Server (NTRS)
Oyama, Akira; Liou, Meng-Sing
2002-01-01
The development of design optimization technology for turbomachinery has been initiated using the multiobjective evolutionary algorithm under NASA's Intelligent Synthesis Environment and Revolutionary Aeropropulsion Concepts programs. As an alternative to the traditional gradient-based methods, evolutionary algorithms (EA's) are emergent design-optimization algorithms modeled after the mechanisms found in natural evolution. EA's search from multiple points, instead of moving from a single point. In addition, they require no derivatives or gradients of the objective function, leading to robustness and simplicity in coupling any evaluation codes. Parallel efficiency also becomes very high by using a simple master-slave concept for function evaluations, since such evaluations often consume the most CPU time, such as computational fluid dynamics. Application of EA's to multiobjective design problems is also straightforward because EA's maintain a population of design candidates in parallel. Because of these advantages, EA's are a unique and attractive approach to real-world design optimization problems.
Bootstrap performance profiles in stochastic algorithms assessment
Costa, Lino; Espírito Santo, Isabel A.C.P.; Oliveira, Pedro
2015-03-10
Optimization with stochastic algorithms has become a relevant research field. Due to its stochastic nature, its assessment is not straightforward and involves integrating accuracy and precision. Performance profiles for the mean do not show the trade-off between accuracy and precision, and parametric stochastic profiles require strong distributional assumptions and are limited to the mean performance for a large number of runs. In this work, bootstrap performance profiles are used to compare stochastic algorithms for different statistics. This technique allows the estimation of the sampling distribution of almost any statistic even with small samples. Multiple comparison profiles are presented for more than two algorithms. The advantages and drawbacks of each assessment methodology are discussed.
Genetic Algorithm Approaches for Actuator Placement
NASA Technical Reports Server (NTRS)
Crossley, William A.
2000-01-01
This research investigated genetic algorithm approaches for smart actuator placement to provide aircraft maneuverability without requiring hinged flaps or other control surfaces. The effort supported goals of the Multidisciplinary Design Optimization focus efforts in NASA's Aircraft au program. This work helped to properly identify various aspects of the genetic algorithm operators and parameters that allow for placement of discrete control actuators/effectors. An improved problem definition, including better definition of the objective function and constraints, resulted from this research effort. The work conducted for this research used a geometrically simple wing model; however, an increasing number of potential actuator placement locations were incorporated to illustrate the ability of the GA to determine promising actuator placement arrangements. This effort's major result is a useful genetic algorithm-based approach to assist in the discrete actuator/effector placement problem.
ERIC Educational Resources Information Center
Janko, Edmund
2002-01-01
In this article, the author insists that those seeking public office prove their literary mettle. As an English teacher, he does have a litmus test for all public officials, judges and senators included--a reading litmus test. He would require that all candidates and nominees have read and reflected on a nucleus of works whose ideas and insights…
1990-01-01
Real-Time Systems Specifications 11 Convenient Auto Rental System Marea82 12 Systems Architecture Marca , D. A., and C. L. McGowan. "Static and...Requirements Marca88 Structured Analysis. Orr’s work is worthy of study Marca , D. A., and C. L. McGowan. SADT: Struc- by the instructor, since it enjoys
The evaluation of the OSGLR algorithm for restructurable controls
NASA Technical Reports Server (NTRS)
Bonnice, W. F.; Wagner, E.; Hall, S. R.; Motyka, P.
1986-01-01
The detection and isolation of commercial aircraft control surface and actuator failures using the orthogonal series generalized likelihood ratio (OSGLR) test was evaluated. The OSGLR algorithm was chosen as the most promising algorithm based on a preliminary evaluation of three failure detection and isolation (FDI) algorithms (the detection filter, the generalized likelihood ratio test, and the OSGLR test) and a survey of the literature. One difficulty of analytic FDI techniques and the OSGLR algorithm in particular is their sensitivity to modeling errors. Therefore, methods of improving the robustness of the algorithm were examined with the incorporation of age-weighting into the algorithm being the most effective approach, significantly reducing the sensitivity of the algorithm to modeling errors. The steady-state implementation of the algorithm based on a single cruise linear model was evaluated using a nonlinear simulation of a C-130 aircraft. A number of off-nominal no-failure flight conditions including maneuvers, nonzero flap deflections, different turbulence levels and steady winds were tested. Based on the no-failure decision functions produced by off-nominal flight conditions, the failure detection performance at the nominal flight condition was determined. The extension of the algorithm to a wider flight envelope by scheduling the linear models used by the algorithm on dynamic pressure and flap deflection was also considered. Since simply scheduling the linear models over the entire flight envelope is unlikely to be adequate, scheduling of the steady-state implentation of the algorithm was briefly investigated.
Digital signal processing algorithms for automatic voice recognition
NASA Technical Reports Server (NTRS)
Botros, Nazeih M.
1987-01-01
The current digital signal analysis algorithms are investigated that are implemented in automatic voice recognition algorithms. Automatic voice recognition means, the capability of a computer to recognize and interact with verbal commands. The digital signal is focused on, rather than the linguistic, analysis of speech signal. Several digital signal processing algorithms are available for voice recognition. Some of these algorithms are: Linear Predictive Coding (LPC), Short-time Fourier Analysis, and Cepstrum Analysis. Among these algorithms, the LPC is the most widely used. This algorithm has short execution time and do not require large memory storage. However, it has several limitations due to the assumptions used to develop it. The other 2 algorithms are frequency domain algorithms with not many assumptions, but they are not widely implemented or investigated. However, with the recent advances in the digital technology, namely signal processors, these 2 frequency domain algorithms may be investigated in order to implement them in voice recognition. This research is concerned with real time, microprocessor based recognition algorithms.
NASA Technical Reports Server (NTRS)
Nobbs, Steven G.
1995-01-01
An overview of the performance seeking control (PSC) algorithm and details of the important components of the algorithm are given. The onboard propulsion system models, the linear programming optimization, and engine control interface are described. The PSC algorithm receives input from various computers on the aircraft including the digital flight computer, digital engine control, and electronic inlet control. The PSC algorithm contains compact models of the propulsion system including the inlet, engine, and nozzle. The models compute propulsion system parameters, such as inlet drag and fan stall margin, which are not directly measurable in flight. The compact models also compute sensitivities of the propulsion system parameters to change in control variables. The engine model consists of a linear steady state variable model (SSVM) and a nonlinear model. The SSVM is updated with efficiency factors calculated in the engine model update logic, or Kalman filter. The efficiency factors are used to adjust the SSVM to match the actual engine. The propulsion system models are mathematically integrated to form an overall propulsion system model. The propulsion system model is then optimized using a linear programming optimization scheme. The goal of the optimization is determined from the selected PSC mode of operation. The resulting trims are used to compute a new operating point about which the optimization process is repeated. This process is continued until an overall (global) optimum is reached before applying the trims to the controllers.
Comprehensive eye evaluation algorithm
NASA Astrophysics Data System (ADS)
Agurto, C.; Nemeth, S.; Zamora, G.; Vahtel, M.; Soliz, P.; Barriga, S.
2016-03-01
In recent years, several research groups have developed automatic algorithms to detect diabetic retinopathy (DR) in individuals with diabetes (DM), using digital retinal images. Studies have indicated that diabetics have 1.5 times the annual risk of developing primary open angle glaucoma (POAG) as do people without DM. Moreover, DM patients have 1.8 times the risk for age-related macular degeneration (AMD). Although numerous investigators are developing automatic DR detection algorithms, there have been few successful efforts to create an automatic algorithm that can detect other ocular diseases, such as POAG and AMD. Consequently, our aim in the current study was to develop a comprehensive eye evaluation algorithm that not only detects DR in retinal images, but also automatically identifies glaucoma suspects and AMD by integrating other personal medical information with the retinal features. The proposed system is fully automatic and provides the likelihood of each of the three eye disease. The system was evaluated in two datasets of 104 and 88 diabetic cases. For each eye, we used two non-mydriatic digital color fundus photographs (macula and optic disc centered) and, when available, information about age, duration of diabetes, cataracts, hypertension, gender, and laboratory data. Our results show that the combination of multimodal features can increase the AUC by up to 5%, 7%, and 8% in the detection of AMD, DR, and glaucoma respectively. Marked improvement was achieved when laboratory results were combined with retinal image features.
Quantum gate decomposition algorithms.
Slepoy, Alexander
2006-07-01
Quantum computing algorithms can be conveniently expressed in a format of a quantum logical circuits. Such circuits consist of sequential coupled operations, termed ''quantum gates'', or quantum analogs of bits called qubits. We review a recently proposed method [1] for constructing general ''quantum gates'' operating on an qubits, as composed of a sequence of generic elementary ''gates''.
The Xmath Integration Algorithm
ERIC Educational Resources Information Center
Bringslid, Odd
2009-01-01
The projects Xmath (Bringslid and Canessa, 2002) and dMath (Bringslid, de la Villa and Rodriguez, 2007) were supported by the European Commission in the so called Minerva Action (Xmath) and The Leonardo da Vinci programme (dMath). The Xmath eBook (Bringslid, 2006) includes algorithms into a wide range of undergraduate mathematical issues embedded…
2005-03-30
The Robotic Follow Algorithm enables allows any robotic vehicle to follow a moving target while reactively choosing a route around nearby obstacles. The robotic follow behavior can be used with different camera systems and can be used with thermal or visual tracking as well as other tracking methods such as radio frequency tags.
Coastal Zone Color Scanner atmospheric correction algorithm: multiple scattering effects.
Gordon, H R; Castaño, D J
1987-06-01
An analysis of the errors due to multiple scattering which are expected to be encountered in application of the current Coastal Zone Color Scanner (CZCS) atmospheric correction algorithm is presented in detail. This was prompted by the observations of others that significant errors would be encountered if the present algorithm were applied to a hypothetical instrument possessing higher radiometric sensitivity than the present CZCS. This study provides CZCS users sufficient information with which to judge the efficacy of the current algorithm with the current sensor and enables them to estimate the impact of the algorithm-induced errors on their applications in a variety of situations. The greatest source of error is the assumption that the molecular and aerosol contributions to the total radiance observed at the sensor can be computed separately. This leads to the requirement that a value epsilon'(lambda,lambda(0)) for the atmospheric correction parameter, which bears little resemblance to its theoretically meaningful counterpart, must usually be employed in the algorithm to obtain an accurate atmospheric correction. The behavior of '(lambda,lambda(0)) with the aerosol optical thickness and aerosol phase function is thoroughly investigated through realistic modeling of radiative transfer in a stratified atmosphere over a Fresnel reflecting ocean. A unique feature of the analysis is that it is carried out in scan coordinates rather than typical earth-sun coordinates allowing elucidation of the errors along typical CZCS scan lines; this is important since, in the normal application of the algorithm, it is assumed that the same value of can be used for an entire CZCS scene or at least for a reasonably large subscene. Two types of variation of ' are found in models for which it would be constant in the single scattering approximation: (1) variation with scan angle in scenes in which a relatively large portion of the aerosol scattering phase function would be examined
Boundary-detection algorithm for locating edges in digital imagery
NASA Technical Reports Server (NTRS)
Myers, V. I. (Principal Investigator); Russell, M. J.; Moore, D. G.; Nelson, G. D.
1975-01-01
The author has identified the following significant results. Initial development of a computer program which implements a boundary detection algorithm to detect edges in digital images is described. An evaluation of the boundary detection algorithm was conducted to locate boundaries of lakes from LANDSAT-1 imagery. The accuracy of the boundary detection algorithm was determined by comparing the area within boundaries of lakes located using digitized LANDSAT imagery with the area of the same lakes planimetered from imagery collected from an aircraft platform.
Sanitary Surveys & Significant Deficiencies Presentation
The Sanitary Surveys & Significant Deficiencies Presentation highlights some of the things EPA looks for during drinking water system site visits, how to avoid significant deficiencies and what to do if you receive one.
A Battery-Aware Algorithm for Supporting Collaborative Applications
NASA Astrophysics Data System (ADS)
Rollins, Sami; Chang-Yit, Cheryl
Battery-powered devices such as laptops, cell phones, and MP3 players are becoming ubiquitous. There are several significant ways in which the ubiquity of battery-powered technology impacts the field of collaborative computing. First, applications such as collaborative data gathering, become possible. Also, existing applications that depend on collaborating devices to maintain the system infrastructure must be reconsidered. Fundamentally, the problem lies in the fact that collaborative applications often require end-user computing devices to perform tasks that happen in the background and are not directly advantageous to the user. In this work, we seek to better understand how laptop users use the batteries attached to their devices and analyze a battery-aware alternative to Gnutella’s ultrapeer selection algorithm. Our algorithm provides insight into how system maintenance tasks can be allocated to battery-powered nodes. The most significant result of our study indicates that a large portion of laptop users can participate in system maintenance without sacrificing any of their battery. These results show great promise for existing collaborative applications as well as new applications, such as collaborative data gathering, that rely upon battery-powered devices.
Flocking algorithm for autonomous flying robots.
Virágh, Csaba; Vásárhelyi, Gábor; Tarcai, Norbert; Szörényi, Tamás; Somorjai, Gergő; Nepusz, Tamás; Vicsek, Tamás
2014-06-01
Animal swarms displaying a variety of typical flocking patterns would not exist without the underlying safe, optimal and stable dynamics of the individuals. The emergence of these universal patterns can be efficiently reconstructed with agent-based models. If we want to reproduce these patterns with artificial systems, such as autonomous aerial robots, agent-based models can also be used in their control algorithms. However, finding the proper algorithms and thus understanding the essential characteristics of the emergent collective behaviour requires thorough and realistic modeling of the robot and also the environment. In this paper, we first present an abstract mathematical model of an autonomous flying robot. The model takes into account several realistic features, such as time delay and locality of communication, inaccuracy of the on-board sensors and inertial effects. We present two decentralized control algorithms. One is based on a simple self-propelled flocking model of animal collective motion, the other is a collective target tracking algorithm. Both algorithms contain a viscous friction-like term, which aligns the velocities of neighbouring agents parallel to each other. We show that this term can be essential for reducing the inherent instabilities of such a noisy and delayed realistic system. We discuss simulation results on the stability of the control algorithms, and perform real experiments to show the applicability of the algorithms on a group of autonomous quadcopters. In our case, bio-inspiration works in two ways. On the one hand, the whole idea of trying to build and control a swarm of robots comes from the observation that birds tend to flock to optimize their behaviour as a group. On the other hand, by using a realistic simulation framework and studying the group behaviour of autonomous robots we can learn about the major factors influencing the flight of bird flocks.
Lahanas, M; Baltas, D; Giannouli, S
2003-03-07
We consider the problem of the global convergence of gradient-based optimization algorithms for interstitial high-dose-rate (HDR) brachytherapy dose optimization using variance-based objectives. Possible local minima could lead to only sub-optimal solutions. We perform a configuration space analysis using a representative set of the entire non-dominated solution space. A set of three prostate implants is used in this study. We compare the results obtained by conjugate gradient algorithms, two variable metric algorithms and fast-simulated annealing. For the variable metric algorithm BFGS from numerical recipes, large fluctuations are observed. The limited memory L-BFGS algorithm and the conjugate gradient algorithm FRPR are globally convergent. Local minima or degenerate states are not observed. We study the possibility of obtaining a representative set of non-dominated solutions using optimal solution rearrangement and a warm start mechanism. For the surface and volume dose variance and their derivatives, a method is proposed which significantly reduces the number of required operations. The optimization time, ignoring a preprocessing step, is independent of the number of sampling points in the planning target volume. Multiobjective dose optimization in HDR brachytherapy using L-BFGS and a new modified computation method for the objectives and derivatives has been accelerated, depending on the number of sampling points, by a factor in the range 10-100.
Self-calibration algorithm in an asynchronous P300-based brain-computer interface
NASA Astrophysics Data System (ADS)
Schettini, F.; Aloise, F.; Aricò, P.; Salinari, S.; Mattia, D.; Cincotti, F.
2014-06-01
Objective. Reliability is a desirable characteristic of brain-computer interface (BCI) systems when they are intended to be used under non-experimental operating conditions. In addition, their overall usability is influenced by the complex and frequent procedures that are required for configuration and calibration. Earlier studies examined the issue of asynchronous control in P300-based BCIs, introducing dynamic stopping and automatic control suspension features. This report proposes and evaluates an algorithm for the automatic recalibration of the classifier's parameters using unsupervised data. Approach. Ten healthy subjects participated in five P300-based BCI sessions throughout a single day. First, we examined whether continuous adaptation of control parameters improved the accuracy of the asynchronous system over time. Then, we assessed the performance of the self-calibration algorithm with respect to the no-recalibration and supervised calibration conditions with regard to system accuracy and communication efficiency. Main results. Offline tests demonstrated that continuous adaptation of the control parameters significantly increased the communication efficiency of asynchronous P300-based BCIs. The self-calibration algorithm correctly assigned labels to unsupervised data with 95% accuracy, effecting communication efficiency that was comparable with that of supervised repeated calibration. Significance. Although additional online tests that involve end-users under non-experimental conditions are needed, these preliminary results are encouraging, from which we conclude that the self-calibration algorithm is a promising solution to improve P300-based BCI usability and reliability.
Adaptive path planning: Algorithm and analysis
Chen, Pang C.
1993-03-01
Path planning has to be fast to support real-time robot programming. Unfortunately, current planning techniques are still too slow to be effective, as they often require several minutes, if not hours of computation. To alleviate this problem, we present a learning algorithm that uses past experience to enhance future performance. The algorithm relies on an existing path planner to provide solutions to difficult tasks. From these solutions, an evolving sparse network of useful subgoals is learned to support faster planning. The algorithm is suitable for both stationary and incrementally-changing environments. To analyze our algorithm, we use a previously developed stochastic model that quantifies experience utility. Using this model, we characterize the situations in which the adaptive planner is useful, and provide quantitative bounds to predict its behavior. The results are demonstrated with problems in manipulator planning. Our algorithm and analysis are sufficiently general that they may also be applied to task planning or other planning domains in which experience is useful.
Evaluating Algorithm Performance Metrics Tailored for Prognostics
NASA Technical Reports Server (NTRS)
Saxena, Abhinav; Celaya, Jose; Saha, Bhaskar; Saha, Sankalita; Goebel, Kai
2009-01-01
Prognostics has taken a center stage in Condition Based Maintenance (CBM) where it is desired to estimate Remaining Useful Life (RUL) of the system so that remedial measures may be taken in advance to avoid catastrophic events or unwanted downtimes. Validation of such predictions is an important but difficult proposition and a lack of appropriate evaluation methods renders prognostics meaningless. Evaluation methods currently used in the research community are not standardized and in many cases do not sufficiently assess key performance aspects expected out of a prognostics algorithm. In this paper we introduce several new evaluation metrics tailored for prognostics and show that they can effectively evaluate various algorithms as compared to other conventional metrics. Specifically four algorithms namely; Relevance Vector Machine (RVM), Gaussian Process Regression (GPR), Artificial Neural Network (ANN), and Polynomial Regression (PR) are compared. These algorithms vary in complexity and their ability to manage uncertainty around predicted estimates. Results show that the new metrics rank these algorithms in different manner and depending on the requirements and constraints suitable metrics may be chosen. Beyond these results, these metrics offer ideas about how metrics suitable to prognostics may be designed so that the evaluation procedure can be standardized. 1
Carbon export algorithm advancements in models
NASA Astrophysics Data System (ADS)
Çağlar Yumruktepe, Veli; Salihoğlu, Barış
2015-04-01
The rate at which anthropogenic CO2 is absorbed by the oceans remains a critical question under investigation by climate researchers. Construction of a complete carbon budget, requires better understanding of air-sea exchanges and the processes controlling the vertical and horizontal transport of carbon in the ocean, particularly the biological carbon pump. Improved parameterization of carbon sequestration within ecosystem models is vital to better understand and predict changes in the global carbon cycle. Due to the complexity of processes controlling particle aggregation, sinking and decomposition, existing ecosystem models necessarily parameterize carbon sequestration using simple algorithms. Development of improved algorithms describing carbon export and sequestration, suitable for inclusion in numerical models is an ongoing work. Existing unique algorithms used in the state-of-the art ecosystem models and new experimental results obtained from mesocosm experiments and open ocean observations have been inserted into a common 1D pelagic ecosystem model for testing purposes. The model was implemented to the timeseries stations in the North Atlantic (BATS, PAP and ESTOC) and were evaluated with datasets of carbon export. Targetted topics of algorithms were PFT functional types, grazing and vertical movement of zooplankton, and remineralization, aggregation and ballasting dynamics of organic matter. Ultimately it is intended to feed improved algorithms to the 3D modelling community, for inclusion in coupled numerical models.
High rate pulse processing algorithms for microcalorimeters
Rabin, Michael; Hoover, Andrew S; Bacrania, Mnesh K; Tan, Hui; Breus, Dimitry; Henning, Wolfgang; Sabourov, Konstantin; Collins, Jeff; Warburton, William K; Dorise, Bertrand; Ullom, Joel N
2009-01-01
It has been demonstrated that microcalorimeter spectrometers based on superconducting transition-edge-sensor can readily achieve sub-100 eV energy resolution near 100 keV. However, the active volume of a single microcalorimeter has to be small to maintain good energy resolution, and pulse decay times are normally in the order of milliseconds due to slow thermal relaxation. Consequently, spectrometers are typically built with an array of microcalorimeters to increase detection efficiency and count rate. Large arrays, however, require as much pulse processing as possible to be performed at the front end of the readout electronics to avoid transferring large amounts of waveform data to a host computer for processing. In this paper, they present digital filtering algorithms for processing microcalorimeter pulses in real time at high count rates. The goal for these algorithms, which are being implemented in the readout electronics that they are also currently developing, is to achieve sufficiently good energy resolution for most applications while being (a) simple enough to be implemented in the readout electronics and (b) capable of processing overlapping pulses and thus achieving much higher output count rates than the rates that existing algorithms are currently achieving. Details of these algorithms are presented, and their performance was compared to that of the 'optimal filter' that is the dominant pulse processing algorithm in the cryogenic-detector community.
2012-01-01
Background Multi-target therapeutics has been shown to be effective for treating complex diseases, and currently, it is a common practice to combine multiple drugs to treat such diseases to optimize the therapeutic outcomes. However, considering the huge number of possible ways to mix multiple drugs at different concentrations, it is practically difficult to identify the optimal drug combination through exhaustive testing. Results In this paper, we propose a novel stochastic search algorithm, called the adaptive reference update (ARU) algorithm, that can provide an efficient and systematic way for optimizing multi-drug cocktails. The ARU algorithm iteratively updates the drug combination to improve its response, where the update is made by comparing the response of the current combination with that of a reference combination, based on which the beneficial update direction is predicted. The reference combination is continuously updated based on the drug response values observed in the past, thereby adapting to the underlying drug response function. To demonstrate the effectiveness of the proposed algorithm, we evaluated its performance based on various multi-dimensional drug functions and compared it with existing algorithms. Conclusions Simulation results show that the ARU algorithm significantly outperforms existing stochastic search algorithms, including the Gur Game algorithm. In fact, the ARU algorithm can more effectively identify potent drug combinations and it typically spends fewer iterations for finding effective combinations. Furthermore, the ARU algorithm is robust to random fluctuations and noise in the measured drug response, which makes the algorithm well-suited for practical drug optimization applications. PMID:23134742
Genetic Algorithms and Local Search
NASA Technical Reports Server (NTRS)
Whitley, Darrell
1996-01-01
The first part of this presentation is a tutorial level introduction to the principles of genetic search and models of simple genetic algorithms. The second half covers the combination of genetic algorithms with local search methods to produce hybrid genetic algorithms. Hybrid algorithms can be modeled within the existing theoretical framework developed for simple genetic algorithms. An application of a hybrid to geometric model matching is given. The hybrid algorithm yields results that improve on the current state-of-the-art for this problem.
Evaluation of Algorithms for Compressing Hyperspectral Data
NASA Technical Reports Server (NTRS)
Cook, Sid; Harsanyi, Joseph; Faber, Vance
2003-01-01
With EO-1 Hyperion in orbit NASA is showing their continued commitment to hyperspectral imaging (HSI). As HSI sensor technology continues to mature, the ever-increasing amounts of sensor data generated will result in a need for more cost effective communication and data handling systems. Lockheed Martin, with considerable experience in spacecraft design and developing special purpose onboard processors, has teamed with Applied Signal & Image Technology (ASIT), who has an extensive heritage in HSI spectral compression and Mapping Science (MSI) for JPEG 2000 spatial compression expertise, to develop a real-time and intelligent onboard processing (OBP) system to reduce HSI sensor downlink requirements. Our goal is to reduce the downlink requirement by a factor > 100, while retaining the necessary spectral and spatial fidelity of the sensor data needed to satisfy the many science, military, and intelligence goals of these systems. Our compression algorithms leverage commercial-off-the-shelf (COTS) spectral and spatial exploitation algorithms. We are currently in the process of evaluating these compression algorithms using statistical analysis and NASA scientists. We are also developing special purpose processors for executing these algorithms onboard a spacecraft.
[The diagnostic algorithm in twin pregnancy].
Ropacka-Lesiak, Mariola; Szaflik, Krzysztof; Breborowicz, Grzegorz H
2015-03-01
This paper presents the diagnostic algorithm in twin pregnancy. The most important sonographic parameters in the assessment of twins have been discussed. Moreover, the most significant complications of twin pregnancy as well as diagnostic possibilities and management, have been also presented and defined.
NASA Technical Reports Server (NTRS)
Vo, San C.; Biegel, Bryan (Technical Monitor)
2001-01-01
Scalar multiplication is an essential operation in elliptic curve cryptosystems because its implementation determines the speed and the memory storage requirements. This paper discusses some improvements on two popular signed window algorithms for implementing scalar multiplications of an elliptic curve point - Morain-Olivos's algorithm and Koyarna-Tsuruoka's algorithm.
A MEDLINE categorization algorithm
Darmoni, Stefan J; Névéol, Aurelie; Renard, Jean-Marie; Gehanno, Jean-Francois; Soualmia, Lina F; Dahamna, Badisse; Thirion, Benoit
2006-01-01
Background Categorization is designed to enhance resource description by organizing content description so as to enable the reader to grasp quickly and easily what are the main topics discussed in it. The objective of this work is to propose a categorization algorithm to classify a set of scientific articles indexed with the MeSH thesaurus, and in particular those of the MEDLINE bibliographic database. In a large bibliographic database such as MEDLINE, finding materials of particular interest to a specialty group, or relevant to a particular audience, can be difficult. The categorization refines the retrieval of indexed material. In the CISMeF terminology, metaterms can be considered as super-concepts. They were primarily conceived to improve recall in the CISMeF quality-controlled health gateway. Methods The MEDLINE categorization algorithm (MCA) is based on semantic links existing between MeSH terms and metaterms on the one hand and between MeSH subheadings and metaterms on the other hand. These links are used to automatically infer a list of metaterms from any MeSH term/subheading indexing. Medical librarians manually select the semantic links. Results The MEDLINE categorization algorithm lists the medical specialties relevant to a MEDLINE file by decreasing order of their importance. The MEDLINE categorization algorithm is available on a Web site. It can run on any MEDLINE file in a batch mode. As an example, the top 3 medical specialties for the set of 60 articles published in BioMed Central Medical Informatics & Decision Making, which are currently indexed in MEDLINE are: information science, organization and administration and medical informatics. Conclusion We have presented a MEDLINE categorization algorithm in order to classify the medical specialties addressed in any MEDLINE file in the form of a ranked list of relevant specialties. The categorization method introduced in this paper is based on the manual indexing of resources with MeSH (terms
Reactive Collision Avoidance Algorithm
NASA Technical Reports Server (NTRS)
Scharf, Daniel; Acikmese, Behcet; Ploen, Scott; Hadaegh, Fred
2010-01-01
The reactive collision avoidance (RCA) algorithm allows a spacecraft to find a fuel-optimal trajectory for avoiding an arbitrary number of colliding spacecraft in real time while accounting for acceleration limits. In addition to spacecraft, the technology can be used for vehicles that can accelerate in any direction, such as helicopters and submersibles. In contrast to existing, passive algorithms that simultaneously design trajectories for a cluster of vehicles working to achieve a common goal, RCA is implemented onboard spacecraft only when an imminent collision is detected, and then plans a collision avoidance maneuver for only that host vehicle, thus preventing a collision in an off-nominal situation for which passive algorithms cannot. An example scenario for such a situation might be when a spacecraft in the cluster is approaching another one, but enters safe mode and begins to drift. Functionally, the RCA detects colliding spacecraft, plans an evasion trajectory by solving the Evasion Trajectory Problem (ETP), and then recovers after the collision is avoided. A direct optimization approach was used to develop the algorithm so it can run in real time. In this innovation, a parameterized class of avoidance trajectories is specified, and then the optimal trajectory is found by searching over the parameters. The class of trajectories is selected as bang-off-bang as motivated by optimal control theory. That is, an avoiding spacecraft first applies full acceleration in a constant direction, then coasts, and finally applies full acceleration to stop. The parameter optimization problem can be solved offline and stored as a look-up table of values. Using a look-up table allows the algorithm to run in real time. Given a colliding spacecraft, the properties of the collision geometry serve as indices of the look-up table that gives the optimal trajectory. For multiple colliding spacecraft, the set of trajectories that avoid all spacecraft is rapidly searched on
Ehsan, Shoaib; Clark, Adrian F.; ur Rehman, Naveed; McDonald-Maier, Klaus D.
2015-01-01
The integral image, an intermediate image representation, has found extensive use in multi-scale local feature detection algorithms, such as Speeded-Up Robust Features (SURF), allowing fast computation of rectangular features at constant speed, independent of filter size. For resource-constrained real-time embedded vision systems, computation and storage of integral image presents several design challenges due to strict timing and hardware limitations. Although calculation of the integral image only consists of simple addition operations, the total number of operations is large owing to the generally large size of image data. Recursive equations allow substantial decrease in the number of operations but require calculation in a serial fashion. This paper presents two new hardware algorithms that are based on the decomposition of these recursive equations, allowing calculation of up to four integral image values in a row-parallel way without significantly increasing the number of operations. An efficient design strategy is also proposed for a parallel integral image computation unit to reduce the size of the required internal memory (nearly 35% for common HD video). Addressing the storage problem of integral image in embedded vision systems, the paper presents two algorithms which allow substantial decrease (at least 44.44%) in the memory requirements. Finally, the paper provides a case study that highlights the utility of the proposed architectures in embedded vision systems. PMID:26184211
Ehsan, Shoaib; Clark, Adrian F; Naveed ur Rehman; McDonald-Maier, Klaus D
2015-07-10
The integral image, an intermediate image representation, has found extensive use in multi-scale local feature detection algorithms, such as Speeded-Up Robust Features (SURF), allowing fast computation of rectangular features at constant speed, independent of filter size. For resource-constrained real-time embedded vision systems, computation and storage of integral image presents several design challenges due to strict timing and hardware limitations. Although calculation of the integral image only consists of simple addition operations, the total number of operations is large owing to the generally large size of image data. Recursive equations allow substantial decrease in the number of operations but require calculation in a serial fashion. This paper presents two new hardware algorithms that are based on the decomposition of these recursive equations, allowing calculation of up to four integral image values in a row-parallel way without significantly increasing the number of operations. An efficient design strategy is also proposed for a parallel integral image computation unit to reduce the size of the required internal memory (nearly 35% for common HD video). Addressing the storage problem of integral image in embedded vision systems, the paper presents two algorithms which allow substantial decrease (at least 44.44%) in the memory requirements. Finally, the paper provides a case study that highlights the utility of the proposed architectures in embedded vision systems.
Algorithm Visualization System for Teaching Spatial Data Algorithms
ERIC Educational Resources Information Center
Nikander, Jussi; Helminen, Juha; Korhonen, Ari
2010-01-01
TRAKLA2 is a web-based learning environment for data structures and algorithms. The system delivers automatically assessed algorithm simulation exercises that are solved using a graphical user interface. In this work, we introduce a novel learning environment for spatial data algorithms, SDA-TRAKLA2, which has been implemented on top of the…
Extreme-scale Algorithms and Solver Resilience
Dongarra, Jack
2016-12-10
A widening gap exists between the peak performance of high-performance computers and the performance achieved by complex applications running on these platforms. Over the next decade, extreme-scale systems will present major new challenges to algorithm development that could amplify this mismatch in such a way that it prevents the productive use of future DOE Leadership computers due to the following; Extreme levels of parallelism due to multicore processors; An increase in system fault rates requiring algorithms to be resilient beyond just checkpoint/restart; Complex memory hierarchies and costly data movement in both energy and performance; Heterogeneous system architectures (mixing CPUs, GPUs, etc.); and Conflicting goals of performance, resilience, and power requirements.
Load-balancing algorithms for climate models
NASA Astrophysics Data System (ADS)
Foster, I. T.; Toonen, B. R.
Implementations of climate models on scalable parallel computer systems can suffer from load imbalances due to temporal and spatial variations in the amount of computation required for physical parameterizations such as solar radiation and convective adjustment. We have developed specialized techniques for correcting such imbalances. These techniques are incorporated in a general-purpose, programmable load-balancing library that allows the mapping of computation to processors to be specified as a series of maps generated by a programmer-supplied load-balancing module. The communication required to move from one map to another is performed automatically by the library, without programmer intervention. In this paper, we describe the load-balancing problem and the techniques that we have developed to solve it. We also describe specific load-balancing algorithms that we have developed for PCCM2, a scalable parallel implementation of the community climate model, and present experimental results that demonstrate the effectiveness of these algorithms on parallel computers.
Algorithms, games, and evolution
Chastain, Erick; Livnat, Adi; Papadimitriou, Christos; Vazirani, Umesh
2014-01-01
Even the most seasoned students of evolution, starting with Darwin himself, have occasionally expressed amazement that the mechanism of natural selection has produced the whole of Life as we see it around us. There is a computational way to articulate the same amazement: “What algorithm could possibly achieve all this in a mere three and a half billion years?” In this paper we propose an answer: We demonstrate that in the regime of weak selection, the standard equations of population genetics describing natural selection in the presence of sex become identical to those of a repeated game between genes played according to multiplicative weight updates (MWUA), an algorithm known in computer science to be surprisingly powerful and versatile. MWUA maximizes a tradeoff between cumulative performance and entropy, which suggests a new view on the maintenance of diversity in evolution. PMID:24979793
NASA Astrophysics Data System (ADS)
Tsoukalas, Ioannis; Kossieris, Panagiotis; Efstratiadis, Andreas; Makropoulos, Christos
2015-04-01
In water resources optimization problems, the calculation of the objective function usually presumes to first run a simulation model and then evaluate its outputs. In several cases, however, long simulation times may pose significant barriers to the optimization procedure. Often, to obtain a solution within a reasonable time, the user has to substantially restrict the allowable number of function evaluations, thus terminating the search much earlier than required by the problem's complexity. A promising novel strategy to address these shortcomings is the use of surrogate modelling techniques within global optimization algorithms. Here we introduce the Surrogate-Enhanced Evolutionary Annealing-Simplex (SE-EAS) algorithm that couples the strengths of surrogate modelling with the effectiveness and efficiency of the EAS method. The algorithm combines three different optimization approaches (evolutionary search, simulated annealing and the downhill simplex search scheme), in which key decisions are partially guided by numerical approximations of the objective function. The performance of the proposed algorithm is benchmarked against other surrogate-assisted algorithms, in both theoretical and practical applications (i.e. test functions and hydrological calibration problems, respectively), within a limited budget of trials (from 100 to 1000). Results reveal the significant potential of using SE-EAS in challenging optimization problems, involving time-consuming simulations.
Fink, Nir; Furst, Miriam; Muchnik, Chava
2012-09-01
A common complaint of the hearing impaired is the inability to understand speech in noisy environments even with their hearing assistive devices. Only a few single-channel algorithms have significantly improved speech intelligibility in noise for hearing-impaired listeners. The current study introduces a cochlear noise reduction algorithm. It is based on a cochlear representation of acoustic signals and real-time derivation of a binary speech mask. The contribution of the algorithm for enhancing word recognition in noise was evaluated on a group of 42 normal-hearing subjects, 35 hearing-aid users, 8 cochlear implant recipients, and 14 participants with bimodal devices. Recognition scores of Hebrew monosyllabic words embedded in Gaussian noise at several signal-to-noise ratios (SNRs) were obtained with processed and unprocessed signals. The algorithm was not effective among the normal-hearing participants. However, it yielded a significant improvement in some of the hearing-impaired subjects under different listening conditions. Its most impressive benefit appeared among cochlear implant recipients. More than 20% improvement in recognition score of noisy words was obtained by 12, 16, and 26 hearing-impaired at SNR of 30, 24, and 18 dB, respectively. The algorithm has a potential to improve speech intelligibility in background noise, yet further research is required to improve its performances.
A comparison of three inverse treatment planning algorithms.
Holmes, T; Mackie, T R
1994-01-01
Three published inverse treatment planning algorithms for physical optimization of external beam radiotherapy are compared. All three algorithms attempt to minimize a quadratic objective function of the dose distribution. It is shown that the algorithms are based on the common framework of Newton's method of multi-dimensional function minimization. The approximations used within this framework to obtain the different algorithms are described. The use of these algorithms requires that the number of weights of elemental dose distributions be equal to the number of sample points taken in the dose volume. The primary factor in determining how the algorithms are implemented is the dose computation model. Two of the algorithms use pencil beam dose models and therefore directly optimize individual pencil beam weights, whereas the third algorithm is implemented to optimize groups of pencil beams, each group converging upon a common point. All dose computation models assume that the irradiated medium is homogeneous. It is shown that the two different implementations produce similar results for the simple optimization problem of conforming dose to a convex target shape. Complex optimization problems consisting of non-convex target shapes and dose limiting structures are shown to require a pencil beam optimization method.
Algorithms for quad-double precision floating pointarithmetic
Hida, Yozo; Li, Xiaoye S.; Bailey, David H.
2000-10-30
A quad-double number is an unevaluated sum of four IEEE double precision numbers, capable of representing at least 212 bits of significance. We present the algorithms for various arithmetic operations (including the four basic operations and various algebraic and transcendental operations) on quad-double numbers. The performance of the algorithms, implemented in C++, is also presented.
A fast and memory-sparing probabilistic selection algorithm for the GPU
Monroe, Laura M; Wendelberger, Joanne; Michalak, Sarah
2010-09-29
A fast and memory-sparing probabilistic top-N selection algorithm is implemented on the GPU. This probabilistic algorithm gives a deterministic result and always terminates. The use of randomization reduces the amount of data that needs heavy processing, and so reduces both the memory requirements and the average time required for the algorithm. This algorithm is well-suited to more general parallel processors with multiple layers of memory hierarchy. Probabilistic Las Vegas algorithms of this kind are a form of stochastic optimization and can be especially useful for processors having a limited amount of fast memory available.
NASA Astrophysics Data System (ADS)
Reda, Ibrahim; Andreas, Afshin
2015-04-01
The Solar Position Algorithm (SPA) calculates the solar zenith and azimuth angles in the period from the year -2000 to 6000, with uncertainties of +/- 0.0003 degrees based on the date, time, and location on Earth. SPA is implemented in C; in addition to being available for download, an online calculator using this code is available at http://www.nrel.gov/midc/solpos/spa.html.
Algorithmic Complexity. Volume II.
1982-06-01
works, give an example, and discuss the inherent weaknesses and their causes. Electrical Network Analysis Knuth mentions the applicability of...of these 3 products of 2-coefficient 2 1 polynomials can be found by a repeated application of the 3 multiplication W Ascheme, only 3.3-9 scalar...see another application of this paradigm later. We now investigate the efficiency of the divide-and-conquer polynomial multiplication algorithm. Let M(n
ARPANET Routing Algorithm Improvements
1978-10-01
IMPROVEMENTS . .PFOnINI ORG. REPORT MUNDER -- ) _ .. .... 3940 7, AUT(c) .. .. .. CONTRACT Of GRANT NUMSlet e) SJ. M. /Mc~uillan E. C./Rosen I...8217), this problem may persist for a very long time, causing extremely bad performance throughout the whole network (for instance, if w’ reports that one of...algorithm may naturally tend to oscillate between bad routing paths and become itself a major contributor to network congestion. These examples show
1983-10-13
determining the solu- tion using the Moore - Penrose inverse . An expression for the mean square error is derived [8,9]. The expression indicates that...Proc. 10. "An Iterative Algorithm for Finding the Minimum Eigenvalue of a Class of Symmetric Matrices," D. Fuhrmann and B. Liu, submitted to 1984 IEEE...Int. Conf. Acous. Sp. 5V. Proc. 11. "Approximating the Eigenvectors of a Symmetric Toeplitz Matrix," by D. Fuhrmann and B. Liu, 1983 Allerton Conf. an
2016-06-07
XBT’s sound speed values instead of temperature values. Studies show that the sound speed at the surface in a specific location varies less than...be entered at the terminal in metric or English temperatures or sound speeds. The algorithm automatically determines which form each data point was... sound speeds. Leroy’s equation is used to derive sound speed from temperature or temperature from sound speed. The previous, current, and next months
Adaptive continuous twisting algorithm
NASA Astrophysics Data System (ADS)
Moreno, Jaime A.; Negrete, Daniel Y.; Torres-González, Victor; Fridman, Leonid
2016-09-01
In this paper, an adaptive continuous twisting algorithm (ACTA) is presented. For double integrator, ACTA produces a continuous control signal ensuring finite time convergence of the states to zero. Moreover, the control signal generated by ACTA compensates the Lipschitz perturbation in finite time, i.e. its value converges to the opposite value of the perturbation. ACTA also keeps its convergence properties, even in the case that the upper bound of the derivative of the perturbation exists, but it is unknown.
Genetic Algorithm for Optimization: Preprocessor and Algorithm
NASA Technical Reports Server (NTRS)
Sen, S. K.; Shaykhian, Gholam A.
2006-01-01
Genetic algorithm (GA) inspired by Darwin's theory of evolution and employed to solve optimization problems - unconstrained or constrained - uses an evolutionary process. A GA has several parameters such the population size, search space, crossover and mutation probabilities, and fitness criterion. These parameters are not universally known/determined a priori for all problems. Depending on the problem at hand, these parameters need to be decided such that the resulting GA performs the best. We present here a preprocessor that achieves just that, i.e., it determines, for a specified problem, the foregoing parameters so that the consequent GA is a best for the problem. We stress also the need for such a preprocessor both for quality (error) and for cost (complexity) to produce the solution. The preprocessor includes, as its first step, making use of all the information such as that of nature/character of the function/system, search space, physical/laboratory experimentation (if already done/available), and the physical environment. It also includes the information that can be generated through any means - deterministic/nondeterministic/graphics. Instead of attempting a solution of the problem straightway through a GA without having/using the information/knowledge of the character of the system, we would do consciously a much better job of producing a solution by using the information generated/created in the very first step of the preprocessor. We, therefore, unstintingly advocate the use of a preprocessor to solve a real-world optimization problem including NP-complete ones before using the statistically most appropriate GA. We also include such a GA for unconstrained function optimization problems.
A scalable parallel algorithm for multiple objective linear programs
NASA Technical Reports Server (NTRS)
Wiecek, Malgorzata M.; Zhang, Hong
1994-01-01
This paper presents an ADBASE-based parallel algorithm for solving multiple objective linear programs (MOLP's). Job balance, speedup and scalability are of primary interest in evaluating efficiency of the new algorithm. Implementation results on Intel iPSC/2 and Paragon multiprocessors show that the algorithm significantly speeds up the process of solving MOLP's, which is understood as generating all or some efficient extreme points and unbounded efficient edges. The algorithm gives specially good results for large and very large problems. Motivation and justification for solving such large MOLP's are also included.
A fast algorithm for numerical solutions to Fortet's equation
NASA Astrophysics Data System (ADS)
Brumen, Gorazd
2008-10-01
A fast algorithm for computation of default times of multiple firms in a structural model is presented. The algorithm uses a multivariate extension of the Fortet's equation and the structure of Toeplitz matrices to significantly improve the computation time. In a financial market consisting of M[not double greater-than sign]1 firms and N discretization points in every dimension the algorithm uses O(nlogn·M·M!·NM(M-1)/2) operations, where n is the number of discretization points in the time domain. The algorithm is applied to firm survival probability computation and zero coupon bond pricing.
Stubbs, Allston Julius; Atilla, Halis Atil
2016-01-01
Summary Background Despite the rapid advancement of imaging and arthroscopic techniques about the hip joint, missed diagnoses are still common. As a deep joint and compared to the shoulder and knee joints, localization of hip symptoms is difficult. Hip pathology is not easily isolated and is often related to intra and extra-articular abnormalities. In light of these diagnostic challenges, we recommend an algorithmic approach to effectively diagnoses and treat hip pain. Methods In this review, hip pain is evaluated from diagnosis to treatment in a clear decision model. First we discuss emergency hip situations followed by the differentiation of intra and extra-articular causes of the hip pain. We differentiate the intra-articular hip as arthritic and non-arthritic and extra-articular pain as surrounding or remote tissue generated. Further, extra-articular hip pain is evaluated according to pain location. Finally we summarize the surgical treatment approach with an algorithmic diagram. Conclusion Diagnosis of hip pathology is difficult because the etiologies of pain may be various. An algorithmic approach to hip restoration from diagnosis to rehabilitation is crucial to successfully identify and manage hip pathologies. Level of evidence: V. PMID:28066734
Baudoin, T; Grgić, M V; Zadravec, D; Geber, G; Tomljenović, D; Kalogjera, L
2013-12-01
ENT navigation has given new opportunities in performing Endoscopic Sinus Surgery (ESS) and improving surgical outcome of the patients` treatment. ESS assisted by a navigation system could be called Navigated Endoscopic Sinus Surgery (NESS). As it is generally accepted that the NESS should be performed only in cases of complex anatomy and pathology, it has not yet been established as a state-of-the-art procedure and thus not used on a daily basis. This paper presents an algorithm for use of a navigation system for basic ESS in the treatment of chronic rhinosinusitis (CRS). The algorithm includes five units that should be highlighted using a navigation system. They are as follows: 1) nasal vestibule unit, 2) OMC unit, 3) anterior ethmoid unit, 4) posterior ethmoid unit, and 5) sphenoid unit. Each unit has a shape of a triangular pyramid and consists of at least four reference points or landmarks. As many landmarks as possible should be marked when determining one of the five units. Navigated orientation in each unit should always precede any surgical intervention. The algorithm should improve the learning curve of trainees and enable surgeons to use the navigation system routinely and systematically.
Symbalisty, E.M.D.; Zinn, J.; Whitaker, R.W.
1995-09-01
This paper describes the history, physics, and algorithms of the computer code RADFLO and its extension HYCHEM. RADFLO is a one-dimensional, radiation-transport hydrodynamics code that is used to compute early-time fireball behavior for low-altitude nuclear bursts. The primary use of the code is the prediction of optical signals produced by nuclear explosions. It has also been used to predict thermal and hydrodynamic effects that are used for vulnerability and lethality applications. Another closely related code, HYCHEM, is an extension of RADFLO which includes the effects of nonequilibrium chemistry. Some examples of numerical results will be shown, along with scaling expressions derived from those results. We describe new computations of the structures and luminosities of steady-state shock waves and radiative thermal waves, which have been extended to cover a range of ambient air densities for high-altitude applications. We also describe recent modifications of the codes to use a one-dimensional analog of the CAVEAT fluid-dynamics algorithm in place of the former standard Richtmyer-von Neumann algorithm.
Chirp Scaling Algorithms for SAR Processing
NASA Technical Reports Server (NTRS)
Jin, M.; Cheng, T.; Chen, M.
1993-01-01
The chirp scaling SAR processing algorithm is both accurate and efficient. Successful implementation requires proper selection of the interval of output samples, which is a function of the chirp interval, signal sampling rate, and signal bandwidth. Analysis indicates that for both airborne and spaceborne SAR applications in the slant range domain a linear chirp scaling is sufficient. To perform nonlinear interpolation process such as to output ground range SAR images, one can use a nonlinear chirp scaling interpolator presented in this paper.
Faster Parameterized Algorithms for Minor Containment
NASA Astrophysics Data System (ADS)
Adler, Isolde; Dorn, Frederic; Fomin, Fedor V.; Sau, Ignasi; Thilikos, Dimitrios M.
The theory of Graph Minors by Robertson and Seymour is one of the deepest and significant theories in modern Combinatorics. This theory has also a strong impact on the recent development of Algorithms, and several areas, like Parameterized Complexity, have roots in Graph Minors. Until very recently it was a common belief that Graph Minors Theory is mainly of theoretical importance. However, it appears that many deep results from Robertson and Seymour's theory can be also used in the design of practical algorithms. Minor containment testing is one of algorithmically most important and technical parts of the theory, and minor containment in graphs of bounded branchwidth is a basic ingredient of this algorithm. In order to implement minor containment testing on graphs of bounded branchwidth, Hicks [NETWORKS 04] described an algorithm, that in time O(3^{k^2}\\cdot (h+k-1)!\\cdot m) decides if a graph G with m edges and branchwidth k, contains a fixed graph H on h vertices as a minor. That algorithm follows the ideas introduced by Robertson and Seymour in [J'CTSB 95]. In this work we improve the dependence on k of Hicks' result by showing that checking if H is a minor of G can be done in time O(2^{(2k +1 )\\cdot log k} \\cdot h^{2k} \\cdot 2^{2h^2} \\cdot m). Our approach is based on a combinatorial object called rooted packing, which captures the properties of the potential models of subgraphs of H that we seek in our dynamic programming algorithm. This formulation with rooted packings allows us to speed up the algorithm when G is embedded in a fixed surface, obtaining the first single-exponential algorithm for minor containment testing. Namely, it runs in time 2^{O(k)} \\cdot h^{2k} \\cdot 2^{O(h)} \\cdot n, with n = |V(G)|. Finally, we show that slight modifications of our algorithm permit to solve some related problems within the same time bounds, like induced minor or contraction minor containment.
An Improved Back Propagation Neural Network Algorithm on Classification Problems
NASA Astrophysics Data System (ADS)
Nawi, Nazri Mohd; Ransing, R. S.; Salleh, Mohd Najib Mohd; Ghazali, Rozaida; Hamid, Norhamreeza Abdul
The back propagation algorithm is one the most popular algorithms to train feed forward neural networks. However, the convergence of this algorithm is slow, it is mainly because of gradient descent algorithm. Previous research demonstrated that in 'feed forward' algorithm, the slope of the activation function is directly influenced by a parameter referred to as 'gain'. This research proposed an algorithm for improving the performance of the back propagation algorithm by introducing the adaptive gain of the activation function. The gain values change adaptively for each node. The influence of the adaptive gain on the learning ability of a neural network is analysed. Multi layer feed forward neural networks have been assessed. Physical interpretation of the relationship between the gain value and the learning rate and weight values is given. The efficiency of the proposed algorithm is compared with conventional Gradient Descent Method and verified by means of simulation on four classification problems. In learning the patterns, the simulations result demonstrate that the proposed method converged faster on Wisconsin breast cancer with an improvement ratio of nearly 2.8, 1.76 on diabetes problem, 65% better on thyroid data sets and 97% faster on IRIS classification problem. The results clearly show that the proposed algorithm significantly improves the learning speed of the conventional back-propagation algorithm.
Dual key speech encryption algorithm based underdetermined BSS.
Zhao, Huan; He, Shaofang; Chen, Zuo; Zhang, Xixiang
2014-01-01
When the number of the mixed signals is less than that of the source signals, the underdetermined blind source separation (BSS) is a significant difficult problem. Due to the fact that the great amount data of speech communications and real-time communication has been required, we utilize the intractability of the underdetermined BSS problem to present a dual key speech encryption method. The original speech is mixed with dual key signals which consist of random key signals (one-time pad) generated by secret seed and chaotic signals generated from chaotic system. In the decryption process, approximate calculation is used to recover the original speech signals. The proposed algorithm for speech signals encryption can resist traditional attacks against the encryption system, and owing to approximate calculation, decryption becomes faster and more accurate. It is demonstrated that the proposed method has high level of security and can recover the original signals quickly and efficiently yet maintaining excellent audio quality.
On the Formal Verification of Conflict Detection Algorithms
NASA Technical Reports Server (NTRS)
Munoz, Cesar; Butler, Ricky W.; Carreno, Victor A.; Dowek, Gilles
2001-01-01
Safety assessment of new air traffic management systems is a main issue for civil aviation authorities. Standard techniques such as testing and simulation have serious limitations in new systems that are significantly more autonomous than the older ones. In this paper, we present an innovative approach, based on formal verification, for establishing the correctness of conflict detection systems. Fundamental to our approach is the concept of trajectory, which is a continuous path in the x-y plane constrained by physical laws and operational requirements. From the Model of trajectories, we extract, and formally prove, high level properties that can serve as a framework to analyze conflict scenarios. We use the Airborne Information for Lateral Spacing (AILS) alerting algorithm as a case study of our approach.
Merging of synchrotron serial crystallographic data by a genetic algorithm
Zander, Ulrich; Cianci, Michele; Foos, Nicolas; Silva, Catarina S.; Mazzei, Luca; Zubieta, Chloe; de Maria, Alejandro; Nanao, Max H.
2016-01-01
Recent advances in macromolecular crystallography have made it practical to rapidly collect hundreds of sub-data sets consisting of small oscillations of incomplete data. This approach, generally referred to as serial crystallography, has many uses, including an increased effective dose per data set, the collection of data from crystals without harvesting (in situ data collection) and studies of dynamic events such as catalytic reactions. However, selecting which data sets from this type of experiment should be merged can be challenging and new methods are required. Here, it is shown that a genetic algorithm can be used for this purpose, and five case studies are presented in which the merging statistics are significantly improved compared with conventional merging of all data. PMID:27599735
ADART: an adaptive algebraic reconstruction algorithm for discrete tomography.
Maestre-Deusto, F Javier; Scavello, Giovanni; Pizarro, Joaquín; Galindo, Pedro L
2011-08-01
In this paper we suggest an algorithm based on the Discrete Algebraic Reconstruction Technique (DART) which is capable of computing high quality reconstructions from substantially fewer projections than required for conventional continuous tomography. Adaptive DART (ADART) goes a step further than DART on the reduction of the number of unknowns of the associated linear system achieving a significant reduction in the pixel error rate of reconstructed objects. The proposed methodology automatically adapts the border definition criterion at each iteration, resulting in a reduction of the number of pixels belonging to the border, and consequently of the number of unknowns in the general algebraic reconstruction linear system to be solved, being this reduction specially important at the final stage of the iterative process. Experimental results show that reconstruction errors are considerably reduced using ADART when compared to original DART, both in clean and noisy environments.
Analysis of image thresholding segmentation algorithms based on swarm intelligence
NASA Astrophysics Data System (ADS)
Zhang, Yi; Lu, Kai; Gao, Yinghui; Yang, Bo
2013-03-01
Swarm intelligence-based image thresholding segmentation algorithms are playing an important role in the research field of image segmentation. In this paper, we briefly introduce the theories of four existing image segmentation algorithms based on swarm intelligence including fish swarm algorithm, artificial bee colony, bacteria foraging algorithm and particle swarm optimization. Then some image benchmarks are tested in order to show the differences of the segmentation accuracy, time consumption, convergence and robustness for Salt & Pepper noise and Gaussian noise of these four algorithms. Through these comparisons, this paper gives qualitative analyses for the performance variance of the four algorithms. The conclusions in this paper would give a significant guide for the actual image segmentation.
Algorithm for Constructing Contour Plots
NASA Technical Reports Server (NTRS)
Johnson, W.; Silva, F.
1984-01-01
General computer algorithm developed for construction of contour plots. algorithm accepts as input data values at set of points irregularly distributed over plane. Algorithm based on interpolation scheme: points in plane connected by straight-line segments to form set of triangles. Program written in FORTRAN IV.
Two Meanings of Algorithmic Mathematics.
ERIC Educational Resources Information Center
Maurer, Stephen B.
1984-01-01
Two mathematical topics are interpreted from the viewpoints of traditional (performing algorithms) and contemporary (creating algorithms and thinking in terms of them for solving problems and developing theory) algorithmic mathematics. The two topics are Horner's method for evaluating polynomials and Gauss's method for solving systems of linear…
Greedy algorithms in disordered systems
NASA Astrophysics Data System (ADS)
Duxbury, P. M.; Dobrin, R.
1999-08-01
We discuss search, minimal path and minimal spanning tree algorithms and their applications to disordered systems. Greedy algorithms solve these problems exactly, and are related to extremal dynamics in physics. Minimal cost path (Dijkstra) and minimal cost spanning tree (Prim) algorithms provide extremal dynamics for a polymer in a random medium (the KPZ universality class) and invasion percolation (without trapping) respectively.
Grammar Rules as Computer Algorithms.
ERIC Educational Resources Information Center
Rieber, Lloyd
1992-01-01
One college writing teacher engaged his class in the revision of a computer program to check grammar, focusing on improvement of the algorithms for identifying inappropriate uses of the passive voice. Process and problems of constructing new algorithms, effects on student writing, and other algorithm applications are discussed. (MSE)
Verifying a Computer Algorithm Mathematically.
ERIC Educational Resources Information Center
Olson, Alton T.
1986-01-01
Presents an example of mathematics from an algorithmic point of view, with emphasis on the design and verification of this algorithm. The program involves finding roots for algebraic equations using the half-interval search algorithm. The program listing is included. (JN)
Parallel algorithms and architecture for computation of manipulator forward dynamics
NASA Technical Reports Server (NTRS)
Fijany, Amir; Bejczy, Antal K.
1989-01-01
Parallel computation of manipulator forward dynamics is investigated. Considering three classes of algorithms for the solution of the problem, that is, the O(n), the O(n exp 2), and the O(n exp 3) algorithms, parallelism in the problem is analyzed. It is shown that the problem belongs to the class of NC and that the time and processors bounds are of O(log2/2n) and O(n exp 4), respectively. However, the fastest stable parallel algorithms achieve the computation time of O(n) and can be derived by parallelization of the O(n exp 3) serial algorithms. Parallel computation of the O(n exp 3) algorithms requires the development of parallel algorithms for a set of fundamentally different problems, that is, the Newton-Euler formulation, the computation of the inertia matrix, decomposition of the symmetric, positive definite matrix, and the solution of triangular systems. Parallel algorithms for this set of problems are developed which can be efficiently implemented on a unique architecture, a triangular array of n(n+2)/2 processors with a simple nearest-neighbor interconnection. This architecture is particularly suitable for VLSI and WSI implementations. The developed parallel algorithm, compared to the best serial O(n) algorithm, achieves an asymptotic speedup of more than two orders-of-magnitude in the computation the forward dynamics.
Improved Global Ocean Color Using Polymer Algorithm
NASA Astrophysics Data System (ADS)
Steinmetz, Francois; Ramon, Didier; Deschamps, ierre-Yves; Stum, Jacques
2010-12-01
A global ocean color product has been developed based on the use of the POLYMER algorithm to correct atmospheric scattering and sun glint and to process the data to a Level 2 ocean color product. Thanks to the use of this algorithm, the coverage and accuracy of the MERIS ocean color product have been significantly improved when compared to the standard product, therefore increasing its usefulness for global ocean monitor- ing applications like GLOBCOLOUR. We will present the latest developments of the algorithm, its first application to MODIS data and its validation against in-situ data from the MERMAID database. Examples will be shown of global NRT chlorophyll maps produced by CLS with POLYMER for operational applications like fishing or oil and gas industry, as well as its use by Scripps for a NASA study of the Beaufort and Chukchi seas.
Parallelism of the SANDstorm hash algorithm.
Torgerson, Mark Dolan; Draelos, Timothy John; Schroeppel, Richard Crabtree
2009-09-01
Mainstream cryptographic hashing algorithms are not parallelizable. This limits their speed and they are not able to take advantage of the current trend of being run on multi-core platforms. Being limited in speed limits their usefulness as an authentication mechanism in secure communications. Sandia researchers have created a new cryptographic hashing algorithm, SANDstorm, which was specifically designed to take advantage of multi-core processing and be parallelizable on a wide range of platforms. This report describes a late-start LDRD effort to verify the parallelizability claims of the SANDstorm designers. We have shown, with operating code and bench testing, that the SANDstorm algorithm may be trivially parallelized on a wide range of hardware platforms. Implementations using OpenMP demonstrates a linear speedup with multiple cores. We have also shown significant performance gains with optimized C code and the use of assembly instructions to exploit particular platform capabilities.
Neural-Network-Biased Genetic Algorithms for Materials Design: Evolutionary Algorithms That Learn.
Patra, Tarak K; Meenakshisundaram, Venkatesh; Hung, Jui-Hsiang; Simmons, David S
2017-02-13
Machine learning has the potential to dramatically accelerate high-throughput approaches to materials design, as demonstrated by successes in biomolecular design and hard materials design. However, in the search for new soft materials exhibiting properties and performance beyond those previously achieved, machine learning approaches are frequently limited by two shortcomings. First, because they are intrinsically interpolative, they are better suited to the optimization of properties within the known range of accessible behavior than to the discovery of new materials with extremal behavior. Second, they require large pre-existing data sets, which are frequently unavailable and prohibitively expensive to produce. Here we describe a new strategy, the neural-network-biased genetic algorithm (NBGA), for combining genetic algorithms, machine learning, and high-throughput computation or experiment to discover materials with extremal properties in the absence of pre-existing data. Within this strategy, predictions from a progressively constructed artificial neural network are employed to bias the evolution of a genetic algorithm, with fitness evaluations performed via direct simulation or experiment. In effect, this strategy gives the evolutionary algorithm the ability to "learn" and draw inferences from its experience to accelerate the evolutionary process. We test this algorithm against several standard optimization problems and polymer design problems and demonstrate that it matches and typically exceeds the efficiency and reproducibility of standard approaches including a direct-evaluation genetic algorithm and a neural-network-evaluated genetic algorithm. The success of this algorithm in a range of test problems indicates that the NBGA provides a robust strategy for employing informatics-accelerated high-throughput methods to accelerate materials design in the absence of pre-existing data.
Genetic algorithms for route discovery.
Gelenbe, Erol; Liu, Peixiang; Lainé, Jeremy
2006-12-01
Packet routing in networks requires knowledge about available paths, which can be either acquired dynamically while the traffic is being forwarded, or statically (in advance) based on prior information of a network's topology. This paper describes an experimental investigation of path discovery using genetic algorithms (GAs). We start with the quality-of-service (QoS)-driven routing protocol called "cognitive packet network" (CPN), which uses smart packets (SPs) to dynamically select routes in a distributed autonomic manner based on a user's QoS requirements. We extend it by introducing a GA at the source routers, which modifies and filters the paths discovered by the CPN. The GA can combine the paths that were previously discovered to create new untested but valid source-to-destination paths, which are then selected on the basis of their "fitness." We present an implementation of this approach, where the GA runs in background mode so as not to overload the ingress routers. Measurements conducted on a network test bed indicate that when the background-traffic load of the network is light to medium, the GA can result in improved QoS. When the background-traffic load is high, it appears that the use of the GA may be detrimental to the QoS experienced by users as compared to CPN routing because the GA uses less timely state information in its decision making.
An efficient algorithm for incompressible N-phase flows
Dong, S.
2014-11-01
We present an efficient algorithm within the phase field framework for simulating the motion of a mixture of N (N⩾2) immiscible incompressible fluids, with possibly very different physical properties such as densities, viscosities, and pairwise surface tensions. The algorithm employs a physical formulation for the N-phase system that honors the conservations of mass and momentum and the second law of thermodynamics. We present a method for uniquely determining the mixing energy density coefficients involved in the N-phase model based on the pairwise surface tensions among the N fluids. Our numerical algorithm has several attractive properties that make it computationally very efficient: (i) it has completely de-coupled the computations for different flow variables, and has also completely de-coupled the computations for the (N−1) phase field functions; (ii) the algorithm only requires the solution of linear algebraic systems after discretization, and no nonlinear algebraic solve is needed; (iii) for each flow variable the linear algebraic system involves only constant and time-independent coefficient matrices, which can be pre-computed during pre-processing, despite the variable density and variable viscosity of the N-phase mixture; (iv) within a time step the semi-discretized system involves only individual de-coupled Helmholtz-type (including Poisson) equations, despite the strongly-coupled phase–field system of fourth spatial order at the continuum level; (v) the algorithm is suitable for large density contrasts and large viscosity contrasts among the N fluids. Extensive numerical experiments have been presented for several problems involving multiple fluid phases, large density contrasts and large viscosity contrasts. In particular, we compare our simulations with the de Gennes theory, and demonstrate that our method produces physically accurate results for multiple fluid phases. We also demonstrate the significant and sometimes dramatic effects of the
Selfish Gene Algorithm Vs Genetic Algorithm: A Review
NASA Astrophysics Data System (ADS)
Ariff, Norharyati Md; Khalid, Noor Elaiza Abdul; Hashim, Rathiah; Noor, Noorhayati Mohamed
2016-11-01
Evolutionary algorithm is one of the algorithms inspired by the nature. Within little more than a decade hundreds of papers have reported successful applications of EAs. In this paper, the Selfish Gene Algorithms (SFGA), as one of the latest evolutionary algorithms (EAs) inspired from the Selfish Gene Theory which is an interpretation of Darwinian Theory ideas from the biologist Richards Dawkins on 1989. In this paper, following a brief introduction to the Selfish Gene Algorithm (SFGA), the chronology of its evolution is presented. It is the purpose of this paper is to present an overview of the concepts of Selfish Gene Algorithm (SFGA) as well as its opportunities and challenges. Accordingly, the history, step involves in the algorithm are discussed and its different applications together with an analysis of these applications are evaluated.
Filter banks and the EM algorithm
Mair, B.A.; Carroll, R.B.; Anderson, J.M.M.
1996-12-31
In this paper, we present a wavelet based modification of the ML-EM algorithm for reconstructing positron emission tomography images. By using the filter bank implementation of the wavelet transform, this algorithm has the flexibility to incorporate a priori information, while maintaining the same computational complexity as the standard ML-EM algorithm. Thus, it has a significant computational advantage over usual Bayesian methods. It differs from recent wavelet-based Bayesian methods as it achieves {open_quotes}regularization{close_quotes} by an adaptive, wavelet-based method of thresholding which minimizes Stein`s Unbiased Estimate of Risk. The basic method consists of applying Donoho and Johnstone`s SureShrink wavelet denoising of the Poisson data, and then applying the standard ML-EM algorithm to the denoised data. A more elaborate method is discussed in which a wavelet denoising step is inserted after each EM iteration. This technique differs from previous smoothing techniques applied to the ML-EM algorithm since it is able to recover edges in discontinuous images.
Benchmarking homogenization algorithms for monthly data
NASA Astrophysics Data System (ADS)
Venema, V. K. C.; Mestre, O.; Aguilar, E.; Auer, I.; Guijarro, J. A.; Domonkos, P.; Vertacnik, G.; Szentimrey, T.; Stepanek, P.; Zahradnicek, P.; Viarre, J.; Müller-Westermeier, G.; Lakatos, M.; Williams, C. N.; Menne, M. J.; Lindau, R.; Rasol, D.; Rustemeier, E.; Kolokythas, K.; Marinova, T.; Andresen, L.; Acquaotta, F.; Fratiannil, S.; Cheval, S.; Klancar, M.; Brunetti, M.; Gruber, C.; Prohom Duran, M.; Likso, T.; Esteban, P.; Brandsma, T.; Willett, K.
2013-09-01
The COST (European Cooperation in Science and Technology) Action ES0601: Advances in homogenization methods of climate series: an integrated approach (HOME) has executed a blind intercomparison and validation study for monthly homogenization algorithms. Time series of monthly temperature and precipitation were evaluated because of their importance for climate studies. The algorithms were validated against a realistic benchmark dataset. Participants provided 25 separate homogenized contributions as part of the blind study as well as 22 additional solutions submitted after the details of the imposed inhomogeneities were revealed. These homogenized datasets were assessed by a number of performance metrics including i) the centered root mean square error relative to the true homogeneous values at various averaging scales, ii) the error in linear trend estimates and iii) traditional contingency skill scores. The metrics were computed both using the individual station series as well as the network average regional series. The performance of the contributions depends significantly on the error metric considered. Although relative homogenization algorithms typically improve the homogeneity of temperature data, only the best ones improve precipitation data. Moreover, state-of-the-art relative homogenization algorithms developed to work with an inhomogeneous reference are shown to perform best. The study showed that currently automatic algorithms can perform as well as manual ones.
Combinatorial Multiobjective Optimization Using Genetic Algorithms
NASA Technical Reports Server (NTRS)
Crossley, William A.; Martin. Eric T.
2002-01-01
The research proposed in this document investigated multiobjective optimization approaches based upon the Genetic Algorithm (GA). Several versions of the GA have been adopted for multiobjective design, but, prior to this research, there had not been significant comparisons of the most popular strategies. The research effort first generalized the two-branch tournament genetic algorithm in to an N-branch genetic algorithm, then the N-branch GA was compared with a version of the popular Multi-Objective Genetic Algorithm (MOGA). Because the genetic algorithm is well suited to combinatorial (mixed discrete / continuous) optimization problems, the GA can be used in the conceptual phase of design to combine selection (discrete variable) and sizing (continuous variable) tasks. Using a multiobjective formulation for the design of a 50-passenger aircraft to meet the competing objectives of minimizing takeoff gross weight and minimizing trip time, the GA generated a range of tradeoff designs that illustrate which aircraft features change from a low-weight, slow trip-time aircraft design to a heavy-weight, short trip-time aircraft design. Given the objective formulation and analysis methods used, the results of this study identify where turboprop-powered aircraft and turbofan-powered aircraft become more desirable for the 50 seat passenger application. This aircraft design application also begins to suggest how a combinatorial multiobjective optimization technique could be used to assist in the design of morphing aircraft.
Novel MRC algorithms using GPGPU
NASA Astrophysics Data System (ADS)
Kato, Kokoro; Taniguchi, Yoshiyuki; Inoue, Tadao; Kadota, Kazuya
2012-06-01
GPGPU (General Purpose Graphic Processor Unit) has been attracting many engineers and scientists who develop their own software for massive numerical computation. With hundreds of core-processors and tens of thousands of threads operating concurrently, GPGPU programs can run significantly fast if their software architecture is well optimized. The basic program model used in GPGPU is SIMD (Single Instruction Multiple Data stream), and one must adapt his programming model to SIMD. However, conditional branching is fundamentally not allowed in SIMD and this limitation is quite challenging to apply GPGPU to photomask related software such as MDP or MRC. In this paper unique methods are proposed to utilize GPU for MRC operation. We explain novel algorithms of mask layout verification by GPGPU.
Algorithms to Automate LCLS Undulator Tuning
Wolf, Zachary
2010-12-03
Automation of the LCLS undulator tuning offers many advantages to the project. Automation can make a substantial reduction in the amount of time the tuning takes. Undulator tuning is fairly complex and automation can make the final tuning less dependent on the skill of the operator. Also, algorithms are fixed and can be scrutinized and reviewed, as opposed to an individual doing the tuning by hand. This note presents algorithms implemented in a computer program written for LCLS undulator tuning. The LCLS undulators must meet the following specifications. The maximum trajectory walkoff must be less than 5 {micro}m over 10 m. The first field integral must be below 40 x 10{sup -6} Tm. The second field integral must be below 50 x 10{sup -6} Tm{sup 2}. The phase error between the electron motion and the radiation field must be less than 10 degrees in an undulator. The K parameter must have the value of 3.5000 {+-} 0.0005. The phase matching from the break regions into the undulator must be accurate to better than 10 degrees. A phase change of 113 x 2{pi} must take place over a distance of 3.656 m centered on the undulator. Achieving these requirements is the goal of the tuning process. Most of the tuning is done with Hall probe measurements. The field integrals are checked using long coil measurements. An analysis program written in Matlab takes the Hall probe measurements and computes the trajectories, phase errors, K value, etc. The analysis program and its calculation techniques were described in a previous note. In this note, a second Matlab program containing tuning algorithms is described. The algorithms to determine the required number and placement of the shims are discussed in detail. This note describes the operation of a computer program which was written to automate LCLS undulator tuning. The algorithms used to compute the shim sizes and locations are discussed.
[Clinical algorithms in the treatment of status epilepticus in children].
Zubcević, S; Buljina, A; Gavranović, M; Uzicanin, S; Catibusić, F
1999-01-01
The clinical algorithm is a text format that is specially suited for presenting a sequence of clinical decisions, for teaching clinical decision making, and for guiding patient care. Clinical algorithms are compared as to their clinical usefulness with decision analysis. We have tried to make clinical algorithm for managing status epilepticus in children that can be applicable to our conditions. Most of the algorithms that are made on this subject include drugs and procedures that are not available at our hospital. We identified performance requirement, defined the set of problems to be solved as well as who would solve them, developed drafts in several versions and put them in the discussion with experts in this field. Algorithm was tested and revised and graphical acceptability was achieved. In the algorithm we tried to clearly define how the clinician should make the decision and to be provided with appropriate feedback. In one year period of experience in working we found this algorithm very useful in managing status epilepticus in children, as well as in teaching young doctors the specifities of algorithms and this specific issue. Their feedback is that they find that it provides the framework for facilitating thinking about clinical problems. Sometimes we hear objection that algorithms may not apply to a specific patient. This objection is based on misunderstanding how algorithms are used and should be corrected by a proper explanation of their use. We conclude that methods should be sought for writing clinical algorithms that represent expert consensus. A clinical algorithm can then be written for many areas of medical decision making that can be standardized. Medical practice would then be presented to students more effectively, accurately and understood better.
On-orbit flight control algorithm description
NASA Technical Reports Server (NTRS)
1975-01-01
Algorithms are presented for rotational and translational control of the space shuttle orbiter in the orbital mission phases, which are external tank separation, orbit insertion, on-orbit and de-orbit. The program provides a versatile control system structure while maintaining uniform communications with other programs, sensors, and control effectors by using an executive routine/functional subroutine format. Software functional requirements are described using block diagrams where feasible, and input--output tables, and the software implementation of each function is presented in equations and structured flow charts. Included are a glossary of all symbols used to define the requirements, and an appendix of supportive material.
Significant Decisions in Labor Cases.
ERIC Educational Resources Information Center
Monthly Labor Review, 1979
1979-01-01
Several significant court decisions involving labor cases are discussed including a series of decisions concerning constitutional protections afforded aliens; the First Amendment and national labor relations laws; and the bifurcated backpay rule. (BM)
Significant Scales in Community Structure
Traag, V. A.; Krings, G.; Van Dooren, P.
2013-01-01
Many complex networks show signs of modular structure, uncovered by community detection. Although many methods succeed in revealing various partitions, it remains difficult to detect at what scale some partition is significant. This problem shows foremost in multi-resolution methods. We here introduce an efficient method for scanning for resolutions in one such method. Additionally, we introduce the notion of “significance” of a partition, based on subgraph probabilities. Significance is independent of the exact method used, so could also be applied in other methods, and can be interpreted as the gain in encoding a graph by making use of a partition. Using significance, we can determine “good” resolution parameters, which we demonstrate on benchmark networks. Moreover, optimizing significance itself also shows excellent performance. We demonstrate our method on voting data from the European Parliament. Our analysis suggests the European Parliament has become increasingly ideologically divided and that nationality plays no role. PMID:24121597
Astronomical Significance of Ancient Monuments
NASA Astrophysics Data System (ADS)
Simonia, I.
2011-06-01
Astronomical significance of Gokhnari megalithic monument (eastern Georgia) is considered. Possible connection of Amirani ancient legend with Gokhnari monument is discussed. Concepts of starry practicality and solar stations are proposed.
An adaptive multi-level simulation algorithm for stochastic biological systems.
Lester, C; Yates, C A; Giles, M B; Baker, R E
2015-01-14
Discrete-state, continuous-time Markov models are widely used in the modeling of biochemical reaction networks. Their complexity often precludes analytic solution, and we rely on stochastic simulation algorithms (SSA) to estimate system statistics. The Gillespie algorithm is exact, but computationally costly as it simulates every single reaction. As such, approximate stochastic simulation algorithms such as the tau-leap algorithm are often used. Potentially computationally more efficient, the system statistics generated suffer from significant bias unless tau is relatively small, in which case the computational time can be comparable to that of the Gillespie algorithm. The multi-level method [Anderson and Higham, "Multi-level Monte Carlo for continuous time Markov chains, with applications in biochemical kinetics," SIAM Multiscale Model. Simul. 10(1), 146-179 (2012)] tackles this problem. A base estimator is computed using many (cheap) sample paths at low accuracy. The bias inherent in this estimator is then reduced using a number of corrections. Each correction term is estimated using a collection of paired sample paths where one path of each pair is generated at a higher accuracy compared to the other (and so more expensive). By sharing random variables between these paired paths, the variance of each correction estimator can be reduced. This renders the multi-level method very efficient as only a relatively small number of paired paths are required to calculate each correction term. In the original multi-level method, each sample path is simulated using the tau-leap algorithm with a fixed value of τ. This approach can result in poor performance when the reaction activity of a system changes substantially over the timescale of interest. By introducing a novel adaptive time-stepping approach where τ is chosen according to the stochastic behaviour of each sample path, we extend the applicability of the multi-level method to such cases. We demonstrate the
NASA Technical Reports Server (NTRS)
Kocurek, Michael J.
2005-01-01
The HARVIST project seeks to automatically provide an accurate, interactive interface to predict crop yield over the entire United States. In order to accomplish this goal, large images must be quickly and automatically classified by crop type. Current trained and untrained classification algorithms, while accurate, are highly inefficient when operating on large datasets. This project sought to develop new variants of two standard trained and untrained classification algorithms that are optimized to take advantage of the spatial nature of image data. The first algorithm, harvist-cluster, utilizes divide-and-conquer techniques to precluster an image in the hopes of increasing overall clustering speed. The second algorithm, harvistSVM, utilizes support vector machines (SVMs), a type of trained classifier. It seeks to increase classification speed by applying a "meta-SVM" to a quick (but inaccurate) SVM to approximate a slower, yet more accurate, SVM. Speedups were achieved by tuning the algorithm to quickly identify when the quick SVM was incorrect, and then reclassifying low-confidence pixels as necessary. Comparing the classification speeds of both algorithms to known baselines showed a slight speedup for large values of k (the number of clusters) for harvist-cluster, and a significant speedup for harvistSVM. Future work aims to automate the parameter tuning process required for harvistSVM, and further improve classification accuracy and speed. Additionally, this research will move documents created in Canvas into ArcGIS. The launch of the Mars Reconnaissance Orbiter (MRO) will provide a wealth of image data such as global maps of Martian weather and high resolution global images of Mars. The ability to store this new data in a georeferenced format will support future Mars missions by providing data for landing site selection and the search for water on Mars.
NASA Astrophysics Data System (ADS)
Egbert, Gary D.
2012-07-01
We describe novel hybrid algorithms for inversion of electromagnetic geophysical data, combining the computational and storage efficiency of a conjugate gradient approach with an Occam scheme for regularization and step-length control. The basic algorithm is based on the observation that iterative solution of the symmetric (Gauss-Newton) normal equations with conjugate gradients effectively generates a sequence of sensitivities for different linear combinations of the data, allowing construction of the Jacobian for a projection of the original full data space. The Occam scheme can then be applied to this projected problem, with the tradeoff parameter chosen by assessing fit to the full data set. For EM geophysical problems with multiple transmitters (either multiple frequencies or source geometries) an extension of the basic hybrid algorithm is possible. In this case multiple forward and adjoint solutions (one each for each transmitter) are required for each step in the iterative normal equation solver, and each corresponds to the sensitivity for a separate linear combination of data. From the perspective of the hybrid approach, with conjugate gradients generating an approximation to the full Jacobian, it is advantageous to save all of the component sensitivities, and use these to solve the projected problem in a larger subspace. We illustrate the algorithms on a simple problem, 2-D magnetotelluric inversion, using synthetic data. Both the basic and modified hybrid schemes produce essentially the same result as an Occam inversion based on a full calculation of the Jacobian, and the modified scheme requires significantly fewer steps (relative to the basic hybrid scheme) to converge to an adequate solution to the normal equations. The algorithms are expected to be useful primarily for 3-D inverse problems for which the computational burden is heavily dominated by solution to the forward and adjoint problems.
Nonlinear inversion of potential-field data using a hybrid-encoding genetic algorithm
Chen, C.; Xia, J.; Liu, J.; Feng, G.
2006-01-01
Using a genetic algorithm to solve an inverse problem of complex nonlinear geophysical equations is advantageous because it does not require computer gradients of models or "good" initial models. The multi-point search of a genetic algorithm makes it easier to find the globally optimal solution while avoiding falling into a local extremum. As is the case in other optimization approaches, the search efficiency for a genetic algorithm is vital in finding desired solutions successfully in a multi-dimensional model space. A binary-encoding genetic algorithm is hardly ever used to resolve an optimization problem such as a simple geophysical inversion with only three unknowns. The encoding mechanism, genetic operators, and population size of the genetic algorithm greatly affect search processes in the evolution. It is clear that improved operators and proper population size promote the convergence. Nevertheless, not all genetic operations perform perfectly while searching under either a uniform binary or a decimal encoding system. With the binary encoding mechanism, the crossover scheme may produce more new individuals than with the decimal encoding. On the other hand, the mutation scheme in a decimal encoding system will create new genes larger in scope than those in the binary encoding. This paper discusses approaches of exploiting the search potential of genetic operations in the two encoding systems and presents an approach with a hybrid-encoding mechanism, multi-point crossover, and dynamic population size for geophysical inversion. We present a method that is based on the routine in which the mutation operation is conducted in the decimal code and multi-point crossover operation in the binary code. The mix-encoding algorithm is called the hybrid-encoding genetic algorithm (HEGA). HEGA provides better genes with a higher probability by a mutation operator and improves genetic algorithms in resolving complicated geophysical inverse problems. Another significant
Sharma, Subhash; Ott, Joseph Williams, Jamone; Dickow, Danny
2011-01-01
Monte Carlo dose calculation algorithms have the potential for greater accuracy than traditional model-based algorithms. This enhanced accuracy is particularly evident in regions of lateral scatter disequilibrium, which can develop during treatments incorporating small field sizes and low-density tissue. A heterogeneous slab phantom was used to evaluate the accuracy of several commercially available dose calculation algorithms, including Monte Carlo dose calculation for CyberKnife, Analytical Anisotropic Algorithm and Pencil Beam convolution for the Eclipse planning system, and convolution-superposition for the Xio planning system. The phantom accommodated slabs of varying density; comparisons between planned and measured dose distributions were accomplished with radiochromic film. The Monte Carlo algorithm provided the most accurate comparison between planned and measured dose distributions. In each phantom irradiation, the Monte Carlo predictions resulted in gamma analysis comparisons >97%, using acceptance criteria of 3% dose and 3-mm distance to agreement. In general, the gamma analysis comparisons for the other algorithms were <95%. The Monte Carlo dose calculation algorithm for CyberKnife provides more accurate dose distribution calculations in regions of lateral electron disequilibrium than commercially available model-based algorithms. This is primarily because of the ability of Monte Carlo algorithms to implicitly account for tissue heterogeneities, density scaling functions; and/or effective depth correction factors are not required.
Sharma, Subhash; Ott, Joseph; Williams, Jamone; Dickow, Danny
2011-01-01
Monte Carlo dose calculation algorithms have the potential for greater accuracy than traditional model-based algorithms. This enhanced accuracy is particularly evident in regions of lateral scatter disequilibrium, which can develop during treatments incorporating small field sizes and low-density tissue. A heterogeneous slab phantom was used to evaluate the accuracy of several commercially available dose calculation algorithms, including Monte Carlo dose calculation for CyberKnife, Analytical Anisotropic Algorithm and Pencil Beam convolution for the Eclipse planning system, and convolution-superposition for the Xio planning system. The phantom accommodated slabs of varying density; comparisons between planned and measured dose distributions were accomplished with radiochromic film. The Monte Carlo algorithm provided the most accurate comparison between planned and measured dose distributions. In each phantom irradiation, the Monte Carlo predictions resulted in gamma analysis comparisons >97%, using acceptance criteria of 3% dose and 3-mm distance to agreement. In general, the gamma analysis comparisons for the other algorithms were <95%. The Monte Carlo dose calculation algorithm for CyberKnife provides more accurate dose distribution calculations in regions of lateral electron disequilibrium than commercially available model-based algorithms. This is primarily because of the ability of Monte Carlo algorithms to implicitly account for tissue heterogeneities, density scaling functions; and/or effective depth correction factors are not required.
Statistical Significance vs. Practical Significance: An Exploration through Health Education
ERIC Educational Resources Information Center
Rosen, Brittany L.; DeMaria, Andrea L.
2012-01-01
The purpose of this paper is to examine the differences between statistical and practical significance, including strengths and criticisms of both methods, as well as provide information surrounding the application of various effect sizes and confidence intervals within health education research. Provided are recommendations, explanations and…
Study of image matching algorithm and sub-pixel fitting algorithm in target tracking
NASA Astrophysics Data System (ADS)
Yang, Ming-dong; Jia, Jianjun; Qiang, Jia; Wang, Jian-yu
2015-03-01
Image correlation matching is a tracking method that searched a region most approximate to the target template based on the correlation measure between two images. Because there is no need to segment the image, and the computation of this method is little. Image correlation matching is a basic method of target tracking. This paper mainly studies the image matching algorithm of gray scale image, which precision is at sub-pixel level. The matching algorithm used in this paper is SAD (Sum of Absolute Difference) method. This method excels in real-time systems because of its low computation complexity. The SAD method is introduced firstly and the most frequently used sub-pixel fitting algorithms are introduced at the meantime. These fitting algorithms can't be used in real-time systems because they are too complex. However, target tracking often requires high real-time performance, we put forward a fitting algorithm named paraboloidal fitting algorithm based on the consideration above, this algorithm is simple and realized easily in real-time system. The result of this algorithm is compared with that of surface fitting algorithm through image matching simulation. By comparison, the precision difference between these two algorithms is little, it's less than 0.01pixel. In order to research the influence of target rotation on precision of image matching, the experiment of camera rotation was carried on. The detector used in the camera is a CMOS detector. It is fixed to an arc pendulum table, take pictures when the camera rotated different angles. Choose a subarea in the original picture as the template, and search the best matching spot using image matching algorithm mentioned above. The result shows that the matching error is bigger when the target rotation angle is larger. It's an approximate linear relation. Finally, the influence of noise on matching precision was researched. Gaussian noise and pepper and salt noise were added in the image respectively, and the image
Significance Analysis of Prognostic Signatures
Beck, Andrew H.; Knoblauch, Nicholas W.; Hefti, Marco M.; Kaplan, Jennifer; Schnitt, Stuart J.; Culhane, Aedin C.; Schroeder, Markus S.; Risch, Thomas; Quackenbush, John; Haibe-Kains, Benjamin
2013-01-01
A major goal in translational cancer research is to identify biological signatures driving cancer progression and metastasis. A common technique applied in genomics research is to cluster patients using gene expression data from a candidate prognostic gene set, and if the resulting clusters show statistically significant outcome stratification, to associate the gene set with prognosis, suggesting its biological and clinical importance. Recent work has questioned the validity of this approach by showing in several breast cancer data sets that “random” gene sets tend to cluster patients into prognostically variable subgroups. This work suggests that new rigorous statistical methods are needed to identify biologically informative prognostic gene sets. To address this problem, we developed Significance Analysis of Prognostic Signatures (SAPS) which integrates standard prognostic tests with a new prognostic significance test based on stratifying patients into prognostic subtypes with random gene sets. SAPS ensures that a significant gene set is not only able to stratify patients into prognostically variable groups, but is also enriched for genes showing strong univariate associations with patient prognosis, and performs significantly better than random gene sets. We use SAPS to perform a large meta-analysis (the largest completed to date) of prognostic pathways in breast and ovarian cancer and their molecular subtypes. Our analyses show that only a small subset of the gene sets found statistically significant using standard measures achieve significance by SAPS. We identify new prognostic signatures in breast and ovarian cancer and their corresponding molecular subtypes, and we show that prognostic signatures in ER negative breast cancer are more similar to prognostic signatures in ovarian cancer than to prognostic signatures in ER positive breast cancer. SAPS is a powerful new method for deriving robust prognostic biological signatures from clinically annotated
Parallel algorithms for placement and routing in VLSI design. Ph.D. Thesis
NASA Technical Reports Server (NTRS)
Brouwer, Randall Jay
1991-01-01
The computational requirements for high quality synthesis, analysis, and verification of very large scale integration (VLSI) designs have rapidly increased with the fast growing complexity of these designs. Research in the past has focused on the development of heuristic algorithms, special purpose hardware accelerators, or parallel algorithms for the numerous design tasks to decrease the time required for solution. Two new parallel algorithms are proposed for two VLSI synthesis tasks, standard cell placement and global routing. The first algorithm, a parallel algorithm for global routing, uses hierarchical techniques to decompose the routing problem into independent routing subproblems that are solved in parallel. Results are then presented which compare the routing quality to the results of other published global routers and which evaluate the speedups attained. The second algorithm, a parallel algorithm for cell placement and global routing, hierarchically integrates a quadrisection placement algorithm, a bisection placement algorithm, and the previous global routing algorithm. Unique partitioning techniques are used to decompose the various stages of the algorithm into independent tasks which can be evaluated in parallel. Finally, results are presented which evaluate the various algorithm alternatives and compare the algorithm performance to other placement programs. Measurements are presented on the parallel speedups available.
A fast quantum algorithm for the affine Boolean function identification
NASA Astrophysics Data System (ADS)
Younes, Ahmed
2015-02-01
Bernstein-Vazirani algorithm (the one-query algorithm) can identify a completely specified linear Boolean function using a single query to the oracle with certainty. The first aim of the paper is to show that if the provided Boolean function is affine, then one more query to the oracle (the two-query algorithm) is required to identify the affinity of the function with certainty. The second aim of the paper is to show that if the provided Boolean function is incompletely defined, then the one-query and the two-query algorithms can be used as bounded-error quantum polynomial algorithms to identify certain classes of incompletely defined linear and affine Boolean functions respectively with probability of success at least 2/3.
Technical Report: Scalable Parallel Algorithms for High Dimensional Numerical Integration
Masalma, Yahya; Jiao, Yu
2010-10-01
We implemented a scalable parallel quasi-Monte Carlo numerical high-dimensional integration for tera-scale data points. The implemented algorithm uses the Sobol s quasi-sequences to generate random samples. Sobol s sequence was used to avoid clustering effects in the generated random samples and to produce low-discrepancy random samples which cover the entire integration domain. The performance of the algorithm was tested. Obtained results prove the scalability and accuracy of the implemented algorithms. The implemented algorithm could be used in different applications where a huge data volume is generated and numerical integration is required. We suggest using the hyprid MPI and OpenMP programming model to improve the performance of the algorithms. If the mixed model is used, attention should be paid to the scalability and accuracy.
A hybrid algorithm for Caputo fractional differential equations
NASA Astrophysics Data System (ADS)
Salgado, G. H. O.; Aguirre, L. A.
2016-04-01
This paper is concerned with the numerical solution of fractional initial value problems (FIVP) in sense of Caputo's definition for dynamical systems. Unlike for integer-order derivatives that have a single definition, there is more than one definition of non integer-order derivatives and the solution of an FIVP is definition-dependent. In this paper, the chief differences of the main definitions of fractional derivatives are revisited and a numerical algorithm to solve an FIVP for Caputo derivative is proposed. The main advantages of the algorithm are twofold: it can be initialized with integer-order derivatives, and it is faster than the corresponding standard algorithm. The performance of the proposed algorithm is illustrated with examples which suggest that it requires about half the computation time to achieve the same accuracy than the standard algorithm.
Simple-random-sampling-based multiclass text classification algorithm.
Liu, Wuying; Wang, Lin; Yi, Mianzhu
2014-01-01
Multiclass text classification (MTC) is a challenging issue and the corresponding MTC algorithms can be used in many applications. The space-time overhead of the algorithms must be concerned about the era of big data. Through the investigation of the token frequency distribution in a Chinese web document collection, this paper reexamines the power law and proposes a simple-random-sampling-based MTC (SRSMTC) algorithm. Supported by a token level memory to store labeled documents, the SRSMTC algorithm uses a text retrieval approach to solve text classification problems. The experimental results on the TanCorp data set show that SRSMTC algorithm can achieve the state-of-the-art performance at greatly reduced space-time requirements.
Dimensionality Reduction Particle Swarm Algorithm for High Dimensional Clustering
Cui, Xiaohui; ST Charles, Jesse Lee; Potok, Thomas E; Beaver, Justin M
2008-01-01
The Particle Swarm Optimization (PSO) clustering algorithm can generate more compact clustering results than the traditional K-means clustering algorithm. However, when clustering high dimensional datasets, the PSO clustering algorithm is notoriously slow because its computation cost increases exponentially with the size of the dataset dimension. Dimensionality reduction techniques offer solutions that both significantly improve the computation time, and yield reasonably accurate clustering results in high dimensional data analysis. In this paper, we introduce research that combines different dimensionality reduction techniques with the PSO clustering algorithm in order to reduce the complexity of high dimensional datasets and speed up the PSO clustering process. We report significant improvements in total runtime. Moreover, the clustering accuracy of the dimensionality reduction PSO clustering algorithm is comparable to the one that uses full dimension space.
Formal verification of an oral messages algorithm for interactive consistency
NASA Technical Reports Server (NTRS)
Rushby, John
1992-01-01
The formal specification and verification of an algorithm for Interactive Consistency based on the Oral Messages algorithm for Byzantine Agreement is described. We compare our treatment with that of Bevier and Young, who presented a formal specification and verification for a very similar algorithm. Unlike Bevier and Young, who observed that 'the invariant maintained in the recursive subcases of the algorithm is significantly more complicated than is suggested by the published proof' and who found its formal verification 'a fairly difficult exercise in mechanical theorem proving,' our treatment is very close to the previously published analysis of the algorithm, and our formal specification and verification are straightforward. This example illustrates how delicate choices in the formulation of the problem can have significant impact on the readability of its formal specification and on the tractability of its formal verification.
Join-Graph Propagation Algorithms
Mateescu, Robert; Kask, Kalev; Gogate, Vibhav; Dechter, Rina
2010-01-01
The paper investigates parameterized approximate message-passing schemes that are based on bounded inference and are inspired by Pearl's belief propagation algorithm (BP). We start with the bounded inference mini-clustering algorithm and then move to the iterative scheme called Iterative Join-Graph Propagation (IJGP), that combines both iteration and bounded inference. Algorithm IJGP belongs to the class of Generalized Belief Propagation algorithms, a framework that allowed connections with approximate algorithms from statistical physics and is shown empirically to surpass the performance of mini-clustering and belief propagation, as well as a number of other state-of-the-art algorithms on several classes of networks. We also provide insight into the accuracy of iterative BP and IJGP by relating these algorithms to well known classes of constraint propagation schemes. PMID:20740057
Direct Fourier Inversion Reconstruction Algorithm for Computed Laminography.
Voropaev, Alexey; Myagotin, Anton; Helfen, Lukas; Baumbach, Tilo
2016-05-01
Synchrotron radiation computed laminography (CL) was developed to complement the conventional computed tomography as a non-destructive 3D imaging method for the inspection of flat thin objects. Recent progress in hardware at synchrotron sources allows one to record internal evolution of specimens at the micrometer scale and sub-second range but also requires increased reconstruction speed to follow structural changes online. A 3D image of the sample interior is usually reconstructed by the well-established filtered backprojection (FBP) approach. Despite of a great success in the reduction of reconstruction time via parallel computations, the FBP algorithm still remains a time-consuming procedure. A promising way to significantly shorten computation time is to directly perform backprojection in frequency domain (a direct Fourier inversion approach). The corresponding algorithms are rarely considered in the literature because of a poor performance or inferior reconstruction quality resulted from inaccurate interpolation in Fourier domain. In this paper, we derive a Fourier-based reconstruction equation designed for the CL scanning geometry. Furthermore, we outline the translation of the continuous solution to a discrete version, which utilizes 3D sinc interpolation. A projection resampling technique allowing for the reduction of the expensive interpolation to its 1D version is proposed. A series of numerical experiments confirms that the resulting image quality is well comparable with the FBP approach while reconstruction time is drastically reduced.
Statistical algorithms for ontology-based annotation of scientific literature
2014-01-01
Background Ontologies encode relationships within a domain in robust data structures that can be used to annotate data objects, including scientific papers, in ways that ease tasks such as search and meta-analysis. However, the annotation process requires significant time and effort when performed by humans. Text mining algorithms can facilitate this process, but they render an analysis mainly based upon keyword, synonym and semantic matching. They do not leverage information embedded in an ontology's structure. Methods We present a probabilistic framework that facilitates the automatic annotation of literature by indirectly modeling the restrictions among the different classes in the ontology. Our research focuses on annotating human functional neuroimaging literature within the Cognitive Paradigm Ontology (CogPO). We use an approach that combines the stochastic simplicity of naïve Bayes with the formal transparency of decision trees. Our data structure is easily modifiable to reflect changing domain knowledge. Results We compare our results across naïve Bayes, Bayesian Decision Trees, and Constrained Decision Tree classifiers that keep a human expert in the loop, in terms of the quality measure of the F1-mirco score. Conclusions Unlike traditional text mining algorithms, our framework can model the knowledge encoded by the dependencies in an ontology, albeit indirectly. We successfully exploit the fact that CogPO has explicitly stated restrictions, and implicit dependencies in the form of patterns in the expert curated annotations. PMID:25093071
Algorithm performance evaluation
NASA Astrophysics Data System (ADS)
Smith, Richard N.; Greci, Anthony M.; Bradley, Philip A.
1995-03-01
Traditionally, the performance of adaptive antenna systems is measured using automated antenna array pattern measuring equipment. This measurement equipment produces a plot of the receive gain of the antenna array as a function of angle. However, communications system users more readily accept and understand bit error rate (BER) as a performance measure. The work reported on here was conducted to characterize adaptive antenna receiver performance in terms of overall communications system performance using BER as a performance measure. The adaptive antenna system selected for this work featured a linear array, least mean square (LMS) adaptive algorithm and a high speed phase shift keyed (PSK) communications modem.
A New Distributed Algorithm for Side-Chain Positioning in the Process of Protein Docking*
Moghadasi, Mohammad; Kozakov, Dima; Vakili, Pirooz; Vajda, Sandor; Paschalidis, Ioannis Ch.
2014-01-01
Side-chain positioning (SCP) is an important component of computational protein docking methods. Existing SCP methods and available software have been designed for protein folding applications where side-chain positioning is also important. As a result they do not take into account significant special structure that SCP for docking exhibits. We propose a new algorithm which poses SCP as a Maximum Weighted Independent Set (MWIS) problem on an appropriately constructed graph. We develop an approximate algorithm which solves a relaxation of the MWIS and then rounds the solution to obtain a high-quality feasible solution to the problem. The algorithm is fully distributed and can be executed on a large network of processing nodes requiring only local information and message-passing between neighboring nodes. Motivated by the special structure in docking, we establish optimality guarantees for a certain class of graphs. Our results on a benchmark set of enzyme-inhibitor protein complexes show that our predictions are close to the native structure and are comparable to the ones obtained by a state-of-the-art method. The results are substantially improved if rotamers from unbound protein structures are included in the search. We also establish that the use of our SCP algorithm substantially improves docking results. PMID:24844567
NASA Astrophysics Data System (ADS)
Zatarain Salazar, Jazmin; Reed, Patrick M.; Herman, Jonathan D.; Giuliani, Matteo; Castelletti, Andrea
2016-06-01
Globally, the pressures of expanding populations, climate change, and increased energy demands are motivating significant investments in re-operationalizing existing reservoirs or designing operating policies for new ones. These challenges require an understanding of the tradeoffs that emerge across the complex suite of multi-sector demands in river basin systems. This study benchmarks our current capabilities to use Evolutionary Multi-Objective Direct Policy Search (EMODPS), a decision analytic framework in which reservoirs' candidate operating policies are represented using parameterized global approximators (e.g., radial basis functions) then those parameterized functions are optimized using multi-objective evolutionary algorithms to discover the Pareto approximate operating policies. We contribute a comprehensive diagnostic assessment of modern MOEAs' abilities to support EMODPS using the Conowingo reservoir in the Lower Susquehanna River Basin, Pennsylvania, USA. Our diagnostic results highlight that EMODPS can be very challenging for some modern MOEAs and that epsilon dominance, time-continuation, and auto-adaptive search are helpful for attaining high levels of performance. The ɛ-MOEA, the auto-adaptive Borg MOEA, and ɛ-NSGAII all yielded superior results for the six-objective Lower Susquehanna benchmarking test case. The top algorithms show low sensitivity to different MOEA parameterization choices and high algorithmic reliability in attaining consistent results for different random MOEA trials. Overall, EMODPS poses a promising method for discovering key reservoir management tradeoffs; however algorithmic choice remains a key concern for problems of increasing complexity.
Sideband Algorithm for Automatic Wind Turbine Gearbox Fault Detection and Diagnosis: Preprint
Zappala, D.; Tavner, P.; Crabtree, C.; Sheng, S.
2013-01-01
Improving the availability of wind turbines (WT) is critical to minimize the cost of wind energy, especially for offshore installations. As gearbox downtime has a significant impact on WT availabilities, the development of reliable and cost-effective gearbox condition monitoring systems (CMS) is of great concern to the wind industry. Timely detection and diagnosis of developing gear defects within a gearbox is an essential part of minimizing unplanned downtime of wind turbines. Monitoring signals from WT gearboxes are highly non-stationary as turbine load and speed vary continuously with time. Time-consuming and costly manual handling of large amounts of monitoring data represent one of the main limitations of most current CMSs, so automated algorithms are required. This paper presents a fault detection algorithm for incorporation into a commercial CMS for automatic gear fault detection and diagnosis. The algorithm allowed the assessment of gear fault severity by tracking progressive tooth gear damage during variable speed and load operating conditions of the test rig. Results show that the proposed technique proves efficient and reliable for detecting gear damage. Once implemented into WT CMSs, this algorithm can automate data interpretation reducing the quantity of information that WT operators must handle.
A novel load-balanced fixed routing (LBFR) algorithm for wavelength routed optical networks
NASA Astrophysics Data System (ADS)
Shen, Gangxiang; Li, Yongcheng; Peng, Limei
2011-11-01
In the wavelength-routed optical transport networks, fixed shortest path routing is one of major lightpath service provisioning strategies, which shows simplicity in network control and operation. Specifically, once a shortest route is found for a node pair, the route is always used for any future lightpath service provisioning, which therefore does not require network control and management system to maintain any active network-wide link state database. On the other hand, the fixed shortest path routing strategy suffers from the disadvantage of unbalanced network traffic load distribution and network congestion because it keeps on employing the same fixed shortest route between each pair of nodes. To avoid the network congestion and meanwhile retain the operational simplicity, in this study we develop a Load-Balanced Fixed Routing (LBFR) algorithm. Through a training process based on a forecasted network traffic load matrix, the proposed algorithm finds a fixed (or few) route(s) for each node pair and employs the fixed route(s) for lightpath service provisioning. Different from the fixed shortest path routes between node pairs, these routes can well balance traffic load within the network when they are used for lightpath service provisioning. Compared to the traditional fixed shortest path routing algorithm, the LBFR algorithm can achieve much better lightpath blocking performance according to our simulation and analytical studies. Moreover, the performance improvement is more significant with the increase of network nodal degree.
Volume reconstruction optimization for tomo-PIV algorithms applied to experimental data
NASA Astrophysics Data System (ADS)
Martins, Fabio J. W. A.; Foucaut, Jean-Marc; Thomas, Lionel; Azevedo, Luis F. A.; Stanislas, Michel
2015-08-01
Tomographic PIV is a three-component volumetric velocity measurement technique based on the tomographic reconstruction of a particle distribution imaged by multiple camera views. In essence, the performance and accuracy of this technique is highly dependent on the parametric adjustment and the reconstruction algorithm used. Although synthetic data have been widely employed to optimize experiments, the resulting reconstructed volumes might not have optimal quality. The purpose of the present study is to offer quality indicators that can be applied to data samples in order to improve the quality of velocity results obtained by the tomo-PIV technique. The methodology proposed can potentially lead to significantly reduction in the time required to optimize a tomo-PIV reconstruction, also leading to better quality velocity results. Tomo-PIV data provided by a six-camera turbulent boundary-layer experiment were used to optimize the reconstruction algorithms according to this methodology. Velocity statistics measurements obtained by optimized BIMART, SMART and MART algorithms were compared with hot-wire anemometer data and velocity measurement uncertainties were computed. Results indicated that BIMART and SMART algorithms produced reconstructed volumes with equivalent quality as the standard MART with the benefit of reduced computational time.
Surpassing Humans and Computers with JellyBean: Crowd-Vision-Hybrid Counting Algorithms
Sarma, Akash Das; Jain, Ayush; Nandi, Arnab; Parameswaran, Aditya; Widom, Jennifer
2015-01-01
Counting objects is a fundamental image processisng primitive, and has many scientific, health, surveillance, security, and military applications. Existing supervised computer vision techniques typically require large quantities of labeled training data, and even with that, fail to return accurate results in all but the most stylized settings. Using vanilla crowd-sourcing, on the other hand, can lead to significant errors, especially on images with many objects. In this paper, we present our JellyBean suite of algorithms, that combines the best of crowds and computer vision to count objects in images, and uses judicious decomposition of images to greatly improve accuracy at low cost. Our algorithms have several desirable properties: (i) they are theoretically optimal or near-optimal, in that they ask as few questions as possible to humans (under certain intuitively reasonable assumptions that we justify in our paper experimentally); (ii) they operate under stand-alone or hybrid modes, in that they can either work independent of computer vision algorithms, or work in concert with them, depending on whether the computer vision techniques are available or useful for the given setting; (iii) they perform very well in practice, returning accurate counts on images that no individual worker or computer vision algorithm can count correctly, while not incurring a high cost. PMID:26844304
Burst suppression probability algorithms: state-space methods for tracking EEG burst suppression
NASA Astrophysics Data System (ADS)
Chemali, Jessica; Ching, ShiNung; Purdon, Patrick L.; Solt, Ken; Brown, Emery N.
2013-10-01
Objective. Burst suppression is an electroencephalogram pattern in which bursts of electrical activity alternate with an isoelectric state. This pattern is commonly seen in states of severely reduced brain activity such as profound general anesthesia, anoxic brain injuries, hypothermia and certain developmental disorders. Devising accurate, reliable ways to quantify burst suppression is an important clinical and research problem. Although thresholding and segmentation algorithms readily identify burst suppression periods, analysis algorithms require long intervals of data to characterize burst suppression at a given time and provide no framework for statistical inference. Approach. We introduce the concept of the burst suppression probability (BSP) to define the brain's instantaneous propensity of being in the suppressed state. To conduct dynamic analyses of burst suppression we propose a state-space model in which the observation process is a binomial model and the state equation is a Gaussian random walk. We estimate the model using an approximate expectation maximization algorithm and illustrate its application in the analysis of rodent burst suppression recordings under general anesthesia and a patient during induction of controlled hypothermia. Main result. The BSP algorithms track burst suppression on a second-to-second time scale, and make possible formal statistical comparisons of burst suppression at different times. Significance. The state-space approach suggests a principled and informative way to analyze burst suppression that can be used to monitor, and eventually to control, the brain states of patients in the operating room and in the intensive care unit.
Surpassing Humans and Computers with JellyBean: Crowd-Vision-Hybrid Counting Algorithms.
Sarma, Akash Das; Jain, Ayush; Nandi, Arnab; Parameswaran, Aditya; Widom, Jennifer
2015-11-01
Counting objects is a fundamental image processisng primitive, and has many scientific, health, surveillance, security, and military applications. Existing supervised computer vision techniques typically require large quantities of labeled training data, and even with that, fail to return accurate results in all but the most stylized settings. Using vanilla crowd-sourcing, on the other hand, can lead to significant errors, especially on images with many objects. In this paper, we present our JellyBean suite of algorithms, that combines the best of crowds and computer vision to count objects in images, and uses judicious decomposition of images to greatly improve accuracy at low cost. Our algorithms have several desirable properties: (i) they are theoretically optimal or near-optimal, in that they ask as few questions as possible to humans (under certain intuitively reasonable assumptions that we justify in our paper experimentally); (ii) they operate under stand-alone or hybrid modes, in that they can either work independent of computer vision algorithms, or work in concert with them, depending on whether the computer vision techniques are available or useful for the given setting; (iii) they perform very well in practice, returning accurate counts on images that no individual worker or computer vision algorithm can count correctly, while not incurring a high cost.
Experimental realization of Shor's quantum factoring algorithm using nuclear magnetic resonance.
Vandersypen, L M; Steffen, M; Breyta, G; Yannoni, C S; Sherwood, M H; Chuang, I L
The number of steps any classical computer requires in order to find the prime factors of an l-digit integer N increases exponentially with l, at least using algorithms known at present. Factoring large integers is therefore conjectured to be intractable classically, an observation underlying the security of widely used cryptographic codes. Quantum computers, however, could factor integers in only polynomial time, using Shor's quantum factoring algorithm. Although important for the study of quantum computers, experimental demonstration of this algorithm has proved elusive. Here we report an implementation of the simplest instance of Shor's algorithm: factorization of N = 15 (whose prime factors are 3 and 5). We use seven spin-1/2 nuclei in a molecule as quantum bits, which can be manipulated with room temperature liquid-state nuclear magnetic resonance techniques. This method of using nuclei to store quantum information is in principle scalable to systems containing many quantum bits, but such scalability is not implied by the present work. The significance of our work lies in the demonstration of experimental and theoretical techniques for precise control and modelling of complex quantum computers. In particular, we present a simple, parameter-free but predictive model of decoherence effects in our system.
A fast rebinning algorithm for 3D positron emission tomography using John's equation
NASA Astrophysics Data System (ADS)
Defrise, Michel; Liu, Xuan
1999-08-01
Volume imaging in positron emission tomography (PET) requires the inversion of the three-dimensional (3D) x-ray transform. The usual solution to this problem is based on 3D filtered-backprojection (FBP), but is slow. Alternative methods have been proposed which factor the 3D data into independent 2D data sets corresponding to the 2D Radon transforms of a stack of parallel slices. Each slice is then reconstructed using 2D FBP. These so-called rebinning methods are numerically efficient but are approximate. In this paper a new exact rebinning method is derived by exploiting the fact that the 3D x-ray transform of a function is the solution to the second-order partial differential equation first studied by John. The method is proposed for two sampling schemes, one corresponding to a pair of infinite plane detectors and another one corresponding to a cylindrical multi-ring PET scanner. The new FORE-J algorithm has been implemented for this latter geometry and was compared with the approximate Fourier rebinning algorithm FORE and with another exact rebinning algorithm, FOREX. Results with simulated data demonstrate a significant improvement in accuracy compared to FORE, while the reconstruction time is doubled. Compared to FOREX, the FORE-J algorithm is slightly less accurate but more than three times faster.
A Dynamic Noise Level Algorithm for Spectral Screening of Peptide MS/MS Spectra
2010-01-01
Background High-throughput shotgun proteomics data contain a significant number of spectra from non-peptide ions or spectra of too poor quality to obtain highly confident peptide identifications. These spectra cannot be identified with any positive peptide matches in some database search programs or are identified with false positives in others. Removing these spectra can improve the database search results and lower computational expense. Results A new algorithm has been developed to filter tandem mass spectra of poor quality from shotgun proteomic experiments. The algorithm determines the noise level dynamically and independently for each spectrum in a tandem mass spectrometric data set. Spectra are filtered based on a minimum number of required signal peaks with a signal-to-noise ratio of 2. The algorithm was tested with 23 sample data sets containing 62,117 total spectra. Conclusions The spectral screening removed 89.0% of the tandem mass spectra that did not yield a peptide match when searched with the MassMatrix database search software. Only 6.0% of tandem mass spectra that yielded peptide matches considered to be true positive matches were lost after spectral screening. The algorithm was found to be very effective at removal of unidentified spectra in other database search programs including Mascot, OMSSA, and X!Tandem (75.93%-91.00%) with a small loss (3.59%-9.40%) of true positive matches. PMID:20731867
A Real-Time Algorithm for the Approximation of Level-Set-Based Curve Evolution
Shi, Yonggang; Karl, William Clem
2010-01-01
In this paper, we present a complete and practical algorithm for the approximation of level-set-based curve evolution suitable for real-time implementation. In particular, we propose a two-cycle algorithm to approximate level-set-based curve evolution without the need of solving partial differential equations (PDEs). Our algorithm is applicable to a broad class of evolution speeds that can be viewed as composed of a data-dependent term and a curve smoothness regularization term. We achieve curve evolution corresponding to such evolution speeds by separating the evolution process into two different cycles: one cycle for the data-dependent term and a second cycle for the smoothness regularization. The smoothing term is derived from a Gaussian filtering process. In both cycles, the evolution is realized through a simple element switching mechanism between two linked lists, that implicitly represents the curve using an integer valued level-set function. By careful construction, all the key evolution steps require only integer operations. A consequence is that we obtain significant computation speedups compared to exact PDE-based approaches while obtaining excellent agreement with these methods for problems of practical engineering interest. In particular, the resulting algorithm is fast enough for use in real-time video processing applications, which we demonstrate through several image segmentation and video tracking experiments. PMID:18390371
Optimized simulations of Olami-Feder-Christensen systems using parallel algorithms
NASA Astrophysics Data System (ADS)
Dominguez, Rachele; Necaise, Rance; Montag, Eric
The sequential nature of the Olami-Feder-Christensen (OFC) model for earthquake simulations limits the benefits of parallel computing approaches because of the frequent communication required between processors. We developed a parallel version of the OFC algorithm for multi-core processors. Our data, even for relatively small system sizes and low numbers of processors, indicates that increasing the number of processors provides significantly faster simulations; producing more efficient results than previous attempts that used network-based Beowulf clusters. Our algorithm optimizes performance by exploiting the multi-core processor architecture, minimizing communication time in contrast to the networked Beowulf-cluster approaches. Our multi-core algorithm is the basis for a new algorithm using GPUs that will drastically increase the number of processors available. Previous studies incorporating realistic structural features of faults into OFC models have revealed spatial and temporal patterns observed in real earthquake systems. The computational advances presented here will allow for studying interacting networks of faults, rather than individual faults, further enhancing our understanding of the relationship between the earth's structure and the triggering process. Support for this project comes from the Chenery Research Fund, the Rashkind Family Endowment, the Walter Williams Craigie Teaching Endowment, and the Schapiro Undergraduate Research Fellowship.