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Sample records for aligned metallic-rich swcnts

  1. HOW TO FIND METAL-RICH ASTEROIDS

    SciTech Connect

    Harris, Alan W.; Drube, Line

    2014-04-10

    The metal content of asteroids is of great interest, not only for theories of their origins and the evolution of the solar system but, in the case of near-Earth objects (NEOs), also for impact mitigation planning and endeavors in the field of planetary resources. However, since the reflection spectra of metallic asteroids are largely featureless, it is difficult to identify them and relatively few are known. We show how data from the Wide-field Infrared Survey Explorer (WISE)/NEOWISE thermal-infrared survey and similar surveys, fitted with a simple thermal model, can reveal objects likely to be metal rich. We provide a list of candidate metal-rich NEOs. Our results imply that future infrared surveys with the appropriate instrumentation could discover many more metal-rich asteroids, providing valuable data for assessment of the impact hazard and the potential of NEOs as reservoirs of vital materials for future interplanetary space activities and, eventually perhaps, for use on Earth.

  2. New process hydrotreats metal-rich feedstocks

    SciTech Connect

    Langhout, W.C.V.Z.; Ouwerkerk, C.; Pronk, K.M.A.

    1980-01-01

    Shell Internationale Petroleum Maatschappij B.V. has developed a hydroprocessing procedure suitable for heavy residual feeds with metal contents of up to about 100 ppm, and Shell plans to introduce soon a process which will enable the catalytic hydrotreating of even the heaviest metal-rich feedstocks. This new process will be studied in an experimental unit expected to be on stream by the end of 1981 at a Venezuelan refinery. Also discussed are the catalytic hydroprocessing of residual material, including the roles of hydrodemetallization, h

  3. Biologically Inspired Purification and Dispersion of SWCNTs

    NASA Technical Reports Server (NTRS)

    Feeback, Daniel L.; Clarke, Mark S.; Nikolaev, Pavel

    2009-01-01

    A biologically inspired method has been developed for (1) separating single-wall carbon nanotubes (SWCNTs) from other materials (principally, amorphous carbon and metal catalysts) in raw production batches and (2) dispersing the SWCNTs as individual particles (in contradistinction to ropes and bundles) in suspension, as required for a number of applications. Prior methods of purification and dispersal of SWCNTs involve, variously, harsh physical processes (e.g., sonication) or harsh chemical processes (e.g., acid reflux). These processes do not completely remove the undesired materials and do not disperse bundles and ropes into individual suspended SWCNTs. Moreover, these processes cut long SWCNTs into shorter pieces, yielding typical nanotube lengths between 150 and 250 nm. In contrast, the present method does not involve harsh physical or chemical processes. The method involves the use of biologically derived dispersal agents (BDDAs) in an aqueous solution that is mechanically homogenized (but not sonicated) and centrifuged. The dense solid material remaining after centrifugation is resuspended by vortexing in distilled water, yielding an aqueous suspension of individual, separated SWCNTs having lengths from about 10 to about 15 microns.

  4. A new metal-rich chondrite grouplet

    NASA Astrophysics Data System (ADS)

    Weisberg, Michael K.; Prinz, Martin; Clayton, Robert N.; Mayeda, Toshiko K.; Sugiura, Naoji; Zashu, Shigeo; Ebihara, Mitsuru

    2001-03-01

    A new grouplet of primitive, metal-rich chondrites, here called the CB (bencubbinite) chondrites, has been recognized. It includes Bencubbin, Weatherford, HH 237 and QUE 94411, paired with QUE 94627. Their mineral compositions, as well as their oxygen and nitrogen isotopic compositions, indicate that they are closely related to the CR and CH chondrites, all of which are members of the more inclusive CR clan. CB chondrites have much greater metal/silicate ratios than any other chondrite group, widely increasing the range of metal/silicate fractionation recorded in solar nebular processes. They also have the greatest moderately volatile lithophile element depletions of any chondritic materials. Metal has compositional trends and zoning patterns that suggest a primitive condensation origin, in contrast with metal from other chondrite groups. CB chondrites, as well as other CR clan chondrites, have much heavier nitrogen (higher 15N/14N) than that in other chondrite groups. The primitive characteristics of the CB chondrites suggests that they contain one of the best records of early nebular processes. Another chondrite, GRO 95551, is petrographically similar to the CB chondrites, but its mineral and oxygen and nitrogen isotope compositions indicate that it formed from a different nebular reservoir.

  5. Raman scattering of linear chains of strongly coupled Ag nanoparticles on SWCNTs

    PubMed Central

    Valmalette, Jean-Christophe; Tan, Zhenquan; Abe, Hiroya; Ohara, Satoshi

    2014-01-01

    We compare the Raman scattering properties of hybrid nanostructures consisting of Ag nanoparticles (NPs) in disordered and aligned arrangements on single-walled carbon nanotubes (SWCNTs) as a result of chemical and photoreduction methods. In the latter case, the unique structure of the very small Ag NP (from 4 to 7 nm) chains generated an extremely large mode at 969 cm−1 that was assigned to the sulphate-silver interaction at the NP surface. Another strong mode was present at 1201 cm−1 and was assigned to an IR-active mode of sodium dodecyl sulphate (SDS); this mode was observed because the symmetry changes altered the selection rules. We demonstrate that both the UV photoreduction of silver and the presence of SWCNTs are necessary to produce this very strong Raman scattering. The Raman modes of the SWCNTs are also significantly modified by the presence of Ag NP chains along the nanotubes. PMID:24912409

  6. Variable Stars In the Unusual, Metal-Rich Globular Cluster

    NASA Technical Reports Server (NTRS)

    Pritzl, Barton J.; Smith, Horace A.; Catelan, Marcio; Sweigart, Allen V.; Oegerle, William R. (Technical Monitor)

    2002-01-01

    We have undertaken a search for variable stars in the metal-rich globular cluster NGC 6388 using time-series BV photometry. Twenty-eight new variables were found in this survey, increasing the total number of variables found near NGC 6388 to approx. 57. A significant number of the variables are RR Lyrae (approx. 14), most of which are probable cluster members. The periods of the fundamental mode RR Lyrae are shown to be unusually long compared to metal-rich field stars. The existence of these long period RRab stars suggests that the horizontal branch of NGC 6388 is unusually bright. This implies that the metallicity-luminosity relationship for RR Lyrae stars is not universal if the RR Lyrae in NGC 6388 are indeed metal-rich. We consider the alternative possibility that the stars in NGC 6388 may span a range in [Fe/H]. Four candidate Population II Cepheids were also found. If they are members of the cluster, NGC 6388 would be the most metal-rich globular cluster to contain Population II Cepheids. The mean V magnitude of the RR Lyrae is found to be 16.85 +/- 0.05 resulting in a distance of 9.0 to 10.3 kpc, for a range of assumed values of (M(sub V)) for RR Lyrae. We determine the reddening of the cluster to be E(B - V) = 0.40 +/- 0.03 mag, with differential reddening across the face of the cluster. We discuss the difficulty in determining the Oosterhoff classification of NGC 6388 and NGC 6441 due to the unusual nature of their RR Lyrae, and address evolutionary constraints on a recent suggestion that they are of Oosterhoff type II.

  7. Structure and Characterization of Vertically Aligned Single-Walled Carbon Nanotube Bundles

    DOE PAGES

    Márquez, Francisco; López, Vicente; Morant, Carmen; Roque-Malherbe, Rolando; Domingo, Concepción; Elizalde, Eduardo; Zamora, Félix

    2010-01-01

    Arrmore » ays of vertically aligned single-walled carbon nanotube bundles, SWCNTs, have been synthesized by simple alcohol catalytic chemical vapor deposition process, carried out at 800°C. The formed SWCNTs are organized in small groups perpendicularly aligned and attached to the substrate. These small bundles show a constant diameter of ca. 30 nm and are formed by the adhesion of no more than twenty individual SWCNTs perfectly aligned along their length.« less

  8. Catalytic CVD of SWCNTs at Low Temperatures and SWCNT Devices

    NASA Astrophysics Data System (ADS)

    Seidel, Robert; Liebau, Maik; Unger, Eugen; Graham, Andrew P.; Duesberg, Georg S.; Kreupl, Franz; Hoenlein, Wolfgang; Pompe, Wolfgang

    2004-09-01

    New results on the planar growth of single-walled carbon nanotubes (SWCNTs) by catalytic chemical vapor deposition (CVD) at low temperatures will be reported. Optimizing catalyst, catalyst support, and growth parameters yields SWCNTs at temperatures as low as 600 °C. Growth at such low temperatures largely affects the diameter distribution since coalescence of the catalyst is suppressed. A phenomenological growth model will be suggested for CVD growth at low temperatures. The model takes into account surface diffusion and is an alternative to the bulk diffusion based vapor-liquid-solid (VLS) model. Furthermore, carbon nanotubes field effect transistors based on substrate grown SWCNTs will be presented. In these devices good contact resistances could be achieved by electroless metal deposition or metal evaporation of the contacts.

  9. Multiple populations in more metal-rich galactic globular clusters

    NASA Astrophysics Data System (ADS)

    Cordero, Maria J.

    In this thesis we present chemical abundances for bright stars in the intermediate metallicity globular cluster (GC) M5, and the relatively metal-rich GCs M71 and 47 Tuc with the goal of improving the understanding of chemical evolution in the metallicity regime sampled by these three GCs. The first chapter presents a brief historical overview in light element abundance variations in globular clusters. In the second chapter we present the results obtained for 47 Tuc, the most-metal rich cluster of my sample. 47 Tuc is an ideal target to study chemical evolution and GC formation in massive more metal-rich GCs since it is the closest massive GC. Chemical abundances for O, Na, Al, Si, Ca, Ti, Fe, Ni, La, and Eu were determined for 164 red giant branch (RGB) stars in 47 Tuc using spectra obtained with both the Hydra multi-fiber spectrograph at the Blanco 4-m telescope and the FLAMES multi-object spectrograph at the ESO Very Large Telescope. The average [Fe/H]= --0.79+/-0.09 dex is consistent with literature values, as well as over-abundances of alpha-elements ([alpha/Fe] ~ 0.3 dex). The n-capture process elements indicate that 47 Tuc is r-process dominated ([Eu/La]=+0.24), and the light elements O, Na, and Al exhibit star-to-star variations. The Na-O anti-correlation, a signature typically seen in Galactic GCs, is present in 47 Tuc, and extends to include a small number of stars with [O/Fe] ~ --0.5. Additionally, the [O/Na] ratios of our sample reveal that the cluster stars can be separated into three distinct populations. A KS-test demonstrates that the O-poor/Na-rich stars are more centrally concentrated than the O-rich/Na-poor stars. The observed number and radial distribution of 47 Tuc's stellar populations, as distinguished by their light element composition, agrees closely with the results obtained from photometric data. We do not find evidence supporting a strong Na-Al correlation in 47 Tuc, which is consistent with current models of AGB nucleosynthesis yields

  10. The Sound Parameter Effect in Metal-Rich Globular Clusters

    NASA Technical Reports Server (NTRS)

    Hall, D. K

    1998-01-01

    Recent Hubble Space Telescope observations have found that the horizontal branches (HBs) in the metal-rich globular clusters NGC 6388 and NGC 6441 slope upward with decreasing B - V. Such a slope is not predicted by canonical HB models and cannot be produced by either a greater cluster age or enhanced mass loss along the red giant branch (RGB). The peculiar HB morphology in these clusters may provide an important clue for understanding the second-parameter effect. We have carried out extensive evolutionary calculations and numerical simulations in order to explore three noncanonical scenarios for explaining the sloped HBs in NGC 6388 and NGC 6441: (1) a high cluster helium abundance scenario, in which the HB evolution is characterized by long blue loops; (2) a rotation scenario, in which internal rotation during the RGB phase increases the HB core mass; and (3) a helium-mixing scenario, in which deep mixing on the RGB enhances the envelope helium abundance. All of these scenarios predict sloped HBs with anomalously bright RR Lyrae variables. We compare this prediction with the properties of the two known RR Lyrae variables in NGC 6388. Additional observational tests of these scenarios are suggested.

  11. Stellar Yields from Metal-rich Asymptotic Giant Branch Models

    NASA Astrophysics Data System (ADS)

    Karakas, Amanda I.; Lugaro, Maria

    2016-07-01

    We present new theoretical stellar yields and surface abundances for three grids of metal-rich asymptotic giant branch (AGB) models. Post-processing nucleosynthesis results are presented for stellar models with initial masses between 1 M ⊙ and 7.5 M ⊙ for Z = 0.007, and 1 M ⊙ and 8 M ⊙ for Z = 0.014 (solar) and Z = 0.03. We include stellar surface abundances as a function of thermal pulse on the AGB for elements from C to Bi and for a selection of isotopic ratios for elements up to Fe and Ni (e.g., {}12{{C}}/{}13{{C}}), which can be obtained from observations of molecules in stars and from the laboratory analysis of meteoritic stardust grains. Ratios of elemental abundances of He/H, C/O, and N/O are also included, which are useful for direct comparison to observations of AGB stars and their progeny, including planetary nebulae. The integrated elemental stellar yields are presented for each model in the grid for hydrogen, helium, and all stable elements from C to Bi. Yields of Li are also included for intermediate-mass models with hot bottom burning. We present the first slow neutron-capture (s-process) yields for super solar metallicity AGB stars with Z = 0.03, and the first complete s-process yields for models more massive than 6 M ⊙ at all three metallicities.

  12. Primordial Molecular Cloud Material in Metal-Rich Carbonaceous Chondrites

    NASA Astrophysics Data System (ADS)

    Taylor, G. J.

    2016-03-01

    The menagerie of objects that make up our Solar System reflects the composition of the huge molecular cloud in which the Sun formed, a late addition of short-lived isotopes from an exploding supernova or stellar winds from a neighboring massive star, heating and/or alteration by water in growing planetesimals that modified and segregated the primordial components, and mixing throughout the Solar System. Outer Solar System objects, such as comets, have always been cold, hence minimizing the changes experienced by more processed objects. They are thought to preserve information about the molecular cloud. Elishevah Van Kooten (Natural History Museum of Denmark and the University of Copenhagen) and co-authors in Denmark and at the University of Hawai'i, measured the isotopic compositions of magnesium and chromium in metal-rich carbonaceous chondrites. They found that the meteorites preserve an isotopic signature of primordial molecular cloud materials, providing a potentially detailed record of the molecular cloud's composition and of materials that formed in the outer Solar System.

  13. On the Radial Breathing Mode in SWCNTs dispersed within PVC

    NASA Astrophysics Data System (ADS)

    Flor, Fernando; Ajayan, Pullickel; Chipara, Alin; Lozano, Karen; Chipara, Dorina; Vajtai, Robert; Chipara, Mircea; Utrgv-Rice Collaboration

    The Radial Breathing Mode (RBM) is an unique set of Raman lines, characterized by shifts smaller than 500 cm-1, assigned to vibrations that affect the diameter of carbon nanotubes. The position of the RBM lines is inversely proportional to the diameter of nanotubes. RBM was reported in Single Walled Carbon Nanotubes (SWCNTs) and Double Walled Carbon Nanotubes. This mode is very sensitive being frequently used to obtain information regarding the stress transfer from the polymeric matrix. Nanocomposites have been prepared by loading the polyvinylchloride (PVC) purchased from Sigma Aldrich with SWCNTs from Cheap Tubes Inc., by melt mixing, using Haake Rheomix equipped with two counter rotating screws. The concentration of SWCNTs dispersed within PVC ranged from 0 % wt. up to 20 % wt. The as recorded spectra have been deconvoluted into several individual lines characterized by an extended Breit-Wigner-Fano line shape. A full analysis of the Raman spectra of the polymeric matrix and of the matrix is reported with emphasize on the RBM features. The spectra have been recorded by using a Renishaw InVia spectrometer equipped with Eclipse filters that allow the recording of Raman lines starting from about 25 cm-1.

  14. Feasibility study for sidewall fluorination of SWCNTs in CF{sub 4} plasma

    SciTech Connect

    Shoda, K.; Kohno, H.; Takeda, S.; Kobayashi, Y.; Takagi, D.

    2008-12-01

    Fluorination of single-wall carbon nanotubes (SWCNTs) was performed by using the CF{sub 4} radio-frequency plasma technique. The structural and bonding properties of the plasma-processed SWCNTs were investigated by transmission electron microscopy, x-ray photoelectron spectroscopy, and Raman spectroscopy. The plasma parameters, i.e., self-biased voltage, plasma ion density, and ion dose, substantially affected the structural and bonding properties of plasma-processed SWCNTs. We show that sidewall fluorination of SWCNTs occurs in CF{sub 4} plasma at low self-biased voltages. Plasma conditions for the sidewall fluorination of SWCNTs are discussed.

  15. Finding metal-rich asteroids - a NEOShield-2 Study

    NASA Astrophysics Data System (ADS)

    Drube, Line; Harris, Alan W.

    2015-11-01

    The 1.2 km diameter Barringer Crater in Arizona was produced by an impact of a metallic asteroid, whereas the impact of a similar sized stony asteroid in 1908 over Tunguska, Russia, resulted in a large airburst but no crater.Studies of the metal content of asteroids are relevant not only to estimations of their potential to wreak devastation on impacting the Earth, but also for theories of their origins and nature, and possibly in the future for endeavors in the field of planetary resources.However the reflection spectra of metallic asteroids are largely featureless, which makes it difficult to identify them and relatively few are therefore known. With reference to radar albedos and taxonomic classifications, we showed (Harris and Drube, 2014) that data from the WISE/NEOWISE thermal-infrared survey (Wright et al. 2010; Mainzer et al. 2011a) fitted with a simple thermal model (NEATM; Harris 1998), can reveal asteroids likely to be metal rich, based on the NEATM fitting parameter, η, which carries information on thermal inertia.To further explore the dependence of η and thermal inertia on taxonomic type, we are continuing analyses of WISE/NEOWISE data and expanding them to include IRAS data (Tedesco et al., 2002). We are calculating the angle between the spin vector and the solar direction, θ, for different sightings of asteroids having known spin vectors. The η values of objects with high thermal inertia and moderate to high spin rates should depend strongly on θ, whereas those with low thermal inertia and/or low spin rates should not. We will present the latest results of our work and provide a demonstration of its potential.References:Harris, A. W. and Drube, L, 2014, Ap. J. Letters, 785, L4Harris, A. W., 1998, Icarus, 131, 291Mainzer, A., et al. 2011a, ApJ, 743:156Tedesco, E. F. et al, 2002, Astron. J., 123, 1056Wright, E. L., et al. 2010, AJ, 140, 1868Acknowledgements:The research leading to these results has received funding from the EU's Seventh Framework

  16. The Gaia-ESO Survey: Metal-rich Bananas in the Bulge

    NASA Astrophysics Data System (ADS)

    Williams, Angus A.; Evans, N. W.; Molloy, Matthew; Kordopatis, Georges; Smith, M. C.; Shen, J.; Gilmore, G.; Randich, S.; Bensby, T.; Francois, P.; Koposov, S. E.; Recio-Blanco, A.; Bayo, A.; Carraro, G.; Casey, A.; Costado, T.; Franciosini, E.; Hourihane, A.; de Laverny, P.; Lewis, J.; Lind, K.; Magrini, L.; Monaco, L.; Morbidelli, L.; Sacco, G. G.; Worley, C.; Zaggia, S.; Mikolaitis, Š.

    2016-06-01

    We analyze the kinematics of ˜2000 giant stars in the direction of the Galactic bulge, extracted from the Gaia-ESO survey in the region -10^\\circ ≲ {\\ell }≲ 10^\\circ and -11^\\circ ≲ b≲ -3^\\circ . We find distinct kinematic trends in the metal-rich ([{{M}}/{{H}}]\\gt 0) and metal-poor ([{{M}}/{{H}}]\\lt 0) stars in the data. The velocity dispersion of the metal-rich stars drops steeply with latitude, compared to a flat profile in the metal-poor stars, as has been seen previously. We argue that the metal-rich stars in this region are mostly on orbits that support the boxy–peanut shape of the bulge, which naturally explains the drop in their velocity dispersion profile with latitude. The metal-rich stars also exhibit peaky features in their line of sight velocity histograms, particularly along the minor axis of the bulge. We propose that these features are due to stars on resonant orbits supporting the boxy–peanut bulge. This conjecture is strengthened through the comparison of the minor axis data with the velocity histograms of resonant orbits generated in simulations of buckled bars. The “banana” or 2:1:2 orbits provide strongly bimodal histograms with narrow velocity peaks that resemble the Gaia-ESO metal-rich data.

  17. The Gaia-ESO Survey: Metal-rich Bananas in the Bulge

    NASA Astrophysics Data System (ADS)

    Williams, Angus A.; Evans, N. W.; Molloy, Matthew; Kordopatis, Georges; Smith, M. C.; Shen, J.; Gilmore, G.; Randich, S.; Bensby, T.; Francois, P.; Koposov, S. E.; Recio-Blanco, A.; Bayo, A.; Carraro, G.; Casey, A.; Costado, T.; Franciosini, E.; Hourihane, A.; de Laverny, P.; Lewis, J.; Lind, K.; Magrini, L.; Monaco, L.; Morbidelli, L.; Sacco, G. G.; Worley, C.; Zaggia, S.; Mikolaitis, Š.

    2016-06-01

    We analyze the kinematics of ˜2000 giant stars in the direction of the Galactic bulge, extracted from the Gaia-ESO survey in the region -10^\\circ ≲ {\\ell }≲ 10^\\circ and -11^\\circ ≲ b≲ -3^\\circ . We find distinct kinematic trends in the metal-rich ([{{M}}/{{H}}]\\gt 0) and metal-poor ([{{M}}/{{H}}]\\lt 0) stars in the data. The velocity dispersion of the metal-rich stars drops steeply with latitude, compared to a flat profile in the metal-poor stars, as has been seen previously. We argue that the metal-rich stars in this region are mostly on orbits that support the boxy-peanut shape of the bulge, which naturally explains the drop in their velocity dispersion profile with latitude. The metal-rich stars also exhibit peaky features in their line of sight velocity histograms, particularly along the minor axis of the bulge. We propose that these features are due to stars on resonant orbits supporting the boxy-peanut bulge. This conjecture is strengthened through the comparison of the minor axis data with the velocity histograms of resonant orbits generated in simulations of buckled bars. The “banana” or 2:1:2 orbits provide strongly bimodal histograms with narrow velocity peaks that resemble the Gaia-ESO metal-rich data.

  18. Shock Effects in the Metal-rich Chondrites QUE 94411, Hammadah al Hamra 237 and Bencubbin

    NASA Technical Reports Server (NTRS)

    Meibom, A.; Righter, K.; Chabot, N.; Dehn, G.; Antignano, A. A.; McCoy, T. J.; Krot, A. N.; Zolensky, M. E.; Petaev, M. I.; Keil, K.

    2004-01-01

    We have studied the metal-rich chondrites QUE94411 (QUE), Hammadah al Hamra 237 (HH237) and Bencubbin with an emphasis on the petrographical and mineralogical effects of the shock processing that these meteorite assemblages have undergone. Iron-nickel metal and chondrule silicates are the main components in these meteorites. These high-temperature components are held together by shock melts consisting of droplets of dendritically intergrown FeNi metal/sulfide embedded in ferrous silicate glass. The silicate glass component of the shock melt is substantially more FeO-rich (FeO: 30 to 40 wt%) than the prevailing chondrule silicates (FeO less than 5 wt%). Fine-grained matrix material, which is a major component in most other chondritic assemblages, is extremely scarce in QUE4411 and HH237; it has not been observed in Bencubbin. This material occurs as rare, hydrated, and fine-grained matrix lumps with major and minor element abundances roughly similar to the ferrous silicate shock melts (and CI). We infer that hydrated, fine-grained material, compositionally similar to these matrix lumps, was originally present between the FeNi metal grains and chondrules, but was preferentially heated by the shock wave and melted. Other shock-related features in QUE94411, HH237, and Bencubbin include a distinct alignment and occasionally strong plastic deformation of metal and chondrule fragments. However, the existence of chemically zoned and metastable FeNi metal condensates condensates in direct contact with shock melts indicates that the shock did not substantially increase the average temperature of the aggregate. TEM analyses of the FeNi metal droplets embedded in the shock melts show martensitic crystal structures, indicating rapid cooling, essentially quenching, of the shock melts. These findings indicate that the preshock temperature of the assemblage was low. Because porphyritic olivine-pyroxene chondrules are absent in QUE94411, HH237, and Bencubbin, it is difficult to

  19. GIANT PLANETS ORBITING METAL-RICH STARS SHOW SIGNATURES OF PLANET-PLANET INTERACTIONS

    SciTech Connect

    Dawson, Rebekah I.; Murray-Clay, Ruth A.

    2013-04-20

    Gas giants orbiting interior to the ice line are thought to have been displaced from their formation locations by processes that remain debated. Here we uncover several new metallicity trends, which together may indicate that two competing mechanisms deliver close-in giant planets: gentle disk migration, operating in environments with a range of metallicities, and violent planet-planet gravitational interactions, primarily triggered in metal-rich systems in which multiple giant planets can form. First, we show with 99.1% confidence that giant planets with semimajor axes between 0.1 and 1 AU orbiting metal-poor stars ([Fe/H] < 0) are confined to lower eccentricities than those orbiting metal-rich stars. Second, we show with 93.3% confidence that eccentric proto-hot Jupiters undergoing tidal circularization primarily orbit metal-rich stars. Finally, we show that only metal-rich stars host a pile-up of hot Jupiters, helping account for the lack of such a pile-up in the overall Kepler sample. Migration caused by stellar perturbers (e.g., stellar Kozai) is unlikely to account for the trends. These trends further motivate follow-up theoretical work addressing which hot Jupiter migration theories can also produce the observed population of eccentric giant planets between 0.1 and 1 AU.

  20. Characterizing Covalently Sidewall-Functionalized SWCNTs by using 1H NMR Spectroscopy

    PubMed Central

    Nelson, Donna J.; Kumar, Ravi

    2013-01-01

    Unambiguous evidence for covalent sidewall functionalization of single-walled carbon nanotubes (SWCNTs) has been a difficult task, especially for nanomaterials in which slight differences in functionality structure produce significant changes in molecular characteristics. Nuclear magnetic resonance (NMR) spectroscopy provides clear information about the structural skeleton of molecules attached to SWCNTs. In order to establish the generality of proton NMR as an analytical technique for characterizing covalently functionalized SWCNTs, we have obtained and analyzed proton NMR data of SWCNT-substituted benzenes across a variety of para substituents. Trends obtained for differences in proton NMR chemical shifts and the impact of o-, p-, and m-directing effects of electrophilic aromatic substituents on phenyl groups covalently bonded to SWCNTs are discussed. PMID:24009779

  1. Macroscopic Ensembles of Aligned Carbon Nanotubes in Bubble Imprints Studied by Polarized Raman Microscopy

    DOE PAGES

    Ushiba, Shota; Hoyt, Jordan; Masui, Kyoko; Kono, Junichiro; Kawata, Satoshi; Shoji, Satoru

    2014-01-01

    We study the alignment of single-wall carbon nanotubes (SWCNTs) in bubble imprints through polarized Raman microscopy. A hemispherical bubble containing SWCNTs is pressed against a glass substrate, resulting in an imprint of the bubble membrane with a coffee ring on the substrate. We find that macroscopic ensembles of aligned SWCNTs are obtained in the imprints, in which there are three patterns of orientations: (i) azimuthal alignment on the coffee ring, (ii) radial alignment at the edge of the membrane, and (iii) random orientation at the center of the membrane. We also find that the alignment of SWCNTs in the imprintsmore » can be manipulated by spinning bubbles. The orientation of SWCNTs on the coffee ring is directed radially, which is orthogonal to the case of unspun bubbles. This approach enables one to align SWCNTs in large quantities and in a short time, potentially opening up a wide range of CNT-based electronic and optical applications.« less

  2. Single-walled carbon nanotubes (SWCNTs) induce vasodilation in isolated rat aortic rings.

    PubMed

    Gutiérrez-Hernández, J M; Ramirez-Lee, M A; Rosas-Hernandez, H; Salazar-García, S; Maldonado-Ortega, D A; González, F J; Gonzalez, C

    2015-06-01

    Single-walled carbon nanotubes (SWCNTs) are used in biological systems with impact in biomedicine in order to improve diagnostics and treatment of diseases. However, their effects upon the vascular system, are not fully understood. Endothelium and smooth muscle cells (SMC) communicate through release of vasoactive factors as nitric oxide (NO) to maintain vascular tone. The aim of this study was to evaluate the effect of SWCNTs on vascular tone using isolated rat aortic rings, which were exposed to SWCNTs (0.1, 1 and 10 μg/mL) in presence and absence of endothelium. SWCNTs induced vasodilation in both conditions, indicating that this effect was independent on endothelium; moreover that vasodilation was NO-independent, since its blockage with L-NAME did not modify the observed effect. Together, these results indicate that SWCNTs induce vasodilation in the macrovasculature, may be through a direct interaction with SMC rather than endothelium independent of NO production. Further investigation is required to fully understand the mechanisms of action and mediators involved in the signaling pathway induced by SWCNTs on the vascular system.

  3. Interfacial activity of acid functionalized single-walled carbon nanotubes (SWCNTs) at the fluid-fluid interface

    NASA Astrophysics Data System (ADS)

    Feng, Tao; Russell, Thomas; Hoagland, David

    2013-03-01

    Interfacial assembly of acid-functionalized single-walled carbon nanotubes at the oil/water interface is achieved by the addition of low molecular weight (MW) amino-terminated polystyrene in the oil phase. The surface activity of carboxylated SWCNTs is strongly influenced by the end-group chemistry and molecular weight of the polystyrene component, the concentrations of this component and the SWCNTs, along with the degree of functionalization of the SWCNTs. The prerequisites for interfacial trapping are amino termini on chains with MW less than 5K and 6 hours or longer incubation of pristine SWCNTs to achieve their carboxylation. Plummets in interfacial tension resembling those for surfactants were observed at critical bulk concentrations of both SWCNTs and PS-NH2. In dried droplets, SWCNTs densely packed with associated PS-NH2 form a bird nest-like interfacial structure, with the SWCNTs preferentially oriented perpendicular to the original interface. Advisor

  4. Discovery of a Cool, Massive, and Metal-rich DAZ White Dwarf

    NASA Astrophysics Data System (ADS)

    Gianninas, A.; Dufour, P.; Bergeron, P.

    2004-12-01

    We report the discovery of a new metal-rich DAZ white dwarf, GD 362. High signal-to-noise ratio optical spectroscopy reveals the presence of spectral lines from hydrogen as well as Ca I, Ca II, Mg I, and Fe I. A detailed model atmosphere analysis of this star yields an effective temperature of Teff=9740+/-50 K, a surface gravity of logg=9.12+/-0.07, and photospheric abundances of log(Ca/H)=-5.2+/-0.1, log(Mg/H)=-4.8+/-0.1, and log(Fe/H)=-4.5+/-0.1. White dwarf cooling models are used to derive a mass of 1.24 Msolar for GD 362, making it the most massive and metal-rich DAZ star uncovered to date. The problems related to the presence of such large metal abundances in a nearby (d~25 pc) white dwarf in terms of an accretion scenario are briefly discussed.

  5. The metal-rich sulfides and phosphides of the early transition metals

    SciTech Connect

    Franzen, H.F. |

    1996-06-01

    Early work on the preparation of refractory metal-rich compounds of the early transition metals resulted in the understanding that metal-metal bonding results in a structural variety that plays an important role in the high-temperature chemistry of these systems. The binary metal-rich systems have been thoroughly studied at high temperatures, and the structures of most, if not all, of the refractory sulfides and phosphides are known. More recently new ternary phases have been discovered, and these have been shown to result from distributed fractional site occupation of metal atom sites in complex structures. The extent of metal-metal bonding has been quantified by Extended-Hueckel Tight-Bonding calculations using Mullikan Overlap Populations. Correlations of site occupancy with MOP based upon the DFSO model have been observed. 44 refs.

  6. SEGUE-2 LIMITS ON METAL-RICH OLD-POPULATION HYPERVELOCITY STARS IN THE GALACTIC HALO

    SciTech Connect

    Kollmeier, Juna A.; Gould, Andrew; Johnson, Jennifer A.; Rockosi, Constance; Beers, Timothy C.; Lee, Young Sun; Knapp, Gillian; Morrison, Heather; Harding, Paul; Weaver, Benjamin A.

    2010-11-01

    We present new limits on the ejection of metal-rich old-population hypervelocity stars (HVSs) from the Galactic center (GC) as probed by the SEGUE-2 survey. Our limits are a factor of 3-10 more stringent than previously reported, depending on stellar type. Compared to the known population of B-star ejectees, there can be no more than 30 times more metal-rich old-population F/G stars ejected from the GC. Because B stars comprise a tiny fraction of a normal stellar population, this places significant limits on the combination of the GC mass function and the ejection mechanism for HVSs. In the presence of a normal GC mass function, our results require an ejection mechanism that is about 5.5 times more efficient at ejecting B stars compared to low-mass F/G stars.

  7. Color-magnitude diagrams for six metal-rich, low-latitude globular clusters

    NASA Technical Reports Server (NTRS)

    Armandroff, Taft E.

    1988-01-01

    Colors and magnitudes for stars on CCD frames for six metal-rich, low-latitude, previously unstudied globular clusters and one well-studied, metal-rich cluster (47 Tuc) have been derived and color-magnitude diagrams have been constructed. The photometry for stars in 47 Tuc are in good agreement with previous studies, while the V magnitudes of the horizontal-branch stars in the six program clusters do not agree with estimates based on secondary methods. The distances to these clusters are different from prior estimates. Redding values are derived for each program cluster. The horizontal branches of the program clusters all appear to lie entirely redwards of the red edge of the instability strip, as is normal for their metallicities.

  8. Pal 12 - A metal-rich globular cluster in the outer halo

    NASA Technical Reports Server (NTRS)

    Cohen, J. G.; Frogel, J. A.; Persson, S. E.; Zinn, R.

    1980-01-01

    New optical and infrared observations of several stars in the distant globular cluster Pal 12 show that they have CO strengths and heavy element abundances only slightly less than in M 71, one of the more metal-rich globular clusters. Pal 12 thus has a metal abundance near the high end of the range over which globular clusters exist and lies in the outer galactic halo. Its red horizontal branch is not anomalous in view of the abundance that has been found.

  9. Self-formation of highly aligned metallic, semiconducting and single chiral single-walled carbon nanotubes assemblies via a crystal template method

    SciTech Connect

    Kawai, Hideki; Hasegawa, Kai; Yanagi, Kazuhiro; Oyane, Ayako; Naitoh, Yasuhisa

    2014-09-01

    The fabrication of an aligned array of single-walled carbon nanotubes (SWCNTs) with a single chiral state has been a significant challenge for SWCNT applications as well as for basic science research. Here, we developed a simple, unique technique to produce assemblies in which metallic, semiconducting, and single chiral state SWCNTs were densely and highly aligned. We utilized a crystal of surfactant as a template on which mono-dispersed SWCNTs in solution self-assembled. Micro-Raman measurements and scanning electron microscopy measurements clearly showed that the SWCNTs were highly and densely aligned parallel to the crystal axis, indicating that approximately 70% of the SWCNTs were within 7° of being parallel. Moreover, the assemblies exhibited good field effect transistor characteristics with an on/off ratio of 1.3 × 10{sup 5}.

  10. High performance transistors via aligned polyfluorene-sorted carbon nanotubes

    SciTech Connect

    Brady, Gerald J.; Joo, Yongho; Singha Roy, Susmit; Gopalan, Padma; Arnold, Michael S.

    2014-02-24

    We evaluate the performance of exceptionally electronic-type sorted, semiconducting, aligned single-walled carbon nanotubes (s-SWCNTs) in field effect transistors (FETs). High on-conductance and high on/off conductance modulation are simultaneously achieved at channel lengths which are both shorter and longer than individual s-SWCNTs. The s-SWCNTs are isolated from heterogeneous mixtures using a polyfluorene-derivative as a selective agent and aligned on substrates via dose-controlled, floating evaporative self-assembly at densities of ∼50 s-SWCNTs μm{sup −1}. At a channel length of 9 μm the s-SWCNTs percolate to span the FET channel, and the on/off ratio and charge transport mobility are 2.2 × 10{sup 7} and 46 cm{sup 2} V{sup −1} s{sup −1}, respectively. At a channel length of 400 nm, a large fraction of the s-SWCNTs directly span the channel, and the on-conductance per width is 61 μS μm{sup −1} and the on/off ratio is 4 × 10{sup 5}. These results are considerably better than previous solution-processed FETs, which have suffered from poor on/off ratio due to spurious metallic nanotubes that bridge the channel. 4071 individual and small bundles of s-SWCNTs are tested in 400 nm channel length FETs, and all show semiconducting behavior, demonstrating the high fidelity of polyfluorenes as selective agents and the promise of assembling s-SWCNTs from solution to create high performance semiconductor electronic devices.

  11. Preparation and Properties of Nanocomposites from Pristine and Modified SWCNTs of Comparable Average Aspect Ratios

    NASA Technical Reports Server (NTRS)

    Smith, Joseph G.; Delozier, Donavon M.; Watson, Kent A.; Connell, John W.; Bekyarova, E.; Haddon, R.; Yu, A.

    2008-01-01

    Low color, flexible, space-durable polyimide films with inherent and robust electrical conductivity to dissipate electrostatic charge (ESC) have been under investigation as part of a materials development activity for future NASA space missions. The use of single-walled carbon nanotubes (SWCNTs) is one means to achieving this goal. Even though the concentration of SWCNTs needed to achieve ESC dissipation is typically low, it is dependent upon purity, size, dispersion, and functionalization. In this study, SWCNTs prepared by the electric arc discharge method were used to synthesize nanocomposites using the LaRC(TradeMark) CP2 backbone as the matrix. Pristine and functionalized SWCNTs were mixed with an alkoxysilane terminated amide acid of LaRC(TradeMark) CP2 and the soluble imide form of the polymer and the resultant nanocomposites evaluated for mechanical, thermal, and electrical properties. Due to the preparative conditions for the pristine and functionalized SWCNTs, the average aspect ratio for both was comparable. This permitted the assessment of SWCNT functionalization with respect to various interactions (e.g. van der Waals, hydrogen bonding, covalent bond formation, etc.) with the matrix and the macroscopic effects upon nanocomposite properties. The results of this study are described herein.

  12. Nanodrawing of Aligned Single Carbon Nanotubes with a Nanopen.

    PubMed

    Yeshua, Talia; Lehmann, Christian; Hübner, Uwe; Azoubel, Suzanna; Magdassi, Shlomo; Campbell, Eleanor E B; Reich, Stephanie; Lewis, Aaron

    2016-03-01

    Single-walled carbon nanotubes (SWCNTs) are considered pivotal components for molecular electronics. Techniques for SWCNT lithography today lack simplicity, flexibility, and speed of direct, oriented deposition at specific target locations. In this paper SWCNTs are directly drawn and placed with chemical identification and demonstrated orientation using fountain pen nanolithography (FPN) under ambient conditions. Placement across specific electrical contacts with such alignment is demonstrated and characterized. The fundamental basis of the drawing process with alignment has potential applications for other related systems such as inorganic nanotubes, polymers, and biological molecules.

  13. Isotopic evidence for primordial molecular cloud material in metal-rich carbonaceous chondrites

    PubMed Central

    Van Kooten, Elishevah M. M. E.; Wielandt, Daniel; Schiller, Martin; Nagashima, Kazuhide; Thomen, Aurélien; Olsen, Mia B.; Nordlund, Åke; Krot, Alexander N.; Bizzarro, Martin

    2016-01-01

    The short-lived 26Al radionuclide is thought to have been admixed into the initially 26Al-poor protosolar molecular cloud before or contemporaneously with its collapse. Bulk inner Solar System reservoirs record positively correlated variability in mass-independent 54Cr and 26Mg*, the decay product of 26Al. This correlation is interpreted as reflecting progressive thermal processing of in-falling 26Al-rich molecular cloud material in the inner Solar System. The thermally unprocessed molecular cloud matter reflecting the nucleosynthetic makeup of the molecular cloud before the last addition of stellar-derived 26Al has not been identified yet but may be preserved in planetesimals that accreted in the outer Solar System. We show that metal-rich carbonaceous chondrites and their components have a unique isotopic signature extending from an inner Solar System composition toward a 26Mg*-depleted and 54Cr-enriched component. This composition is consistent with that expected for thermally unprocessed primordial molecular cloud material before its pollution by stellar-derived 26Al. The 26Mg* and 54Cr compositions of bulk metal-rich chondrites require significant amounts (25–50%) of primordial molecular cloud matter in their precursor material. Given that such high fractions of primordial molecular cloud material are expected to survive only in the outer Solar System, we infer that, similarly to cometary bodies, metal-rich carbonaceous chondrites are samples of planetesimals that accreted beyond the orbits of the gas giants. The lack of evidence for this material in other chondrite groups requires isolation from the outer Solar System, possibly by the opening of disk gaps from the early formation of gas giants. PMID:26858438

  14. Isotopic evidence for primordial molecular cloud material in metal-rich carbonaceous chondrites.

    PubMed

    Van Kooten, Elishevah M M E; Wielandt, Daniel; Schiller, Martin; Nagashima, Kazuhide; Thomen, Aurélien; Larsen, Kirsten K; Olsen, Mia B; Nordlund, Åke; Krot, Alexander N; Bizzarro, Martin

    2016-02-23

    The short-lived (26)Al radionuclide is thought to have been admixed into the initially (26)Al-poor protosolar molecular cloud before or contemporaneously with its collapse. Bulk inner Solar System reservoirs record positively correlated variability in mass-independent (54)Cr and (26)Mg*, the decay product of (26)Al. This correlation is interpreted as reflecting progressive thermal processing of in-falling (26)Al-rich molecular cloud material in the inner Solar System. The thermally unprocessed molecular cloud matter reflecting the nucleosynthetic makeup of the molecular cloud before the last addition of stellar-derived (26)Al has not been identified yet but may be preserved in planetesimals that accreted in the outer Solar System. We show that metal-rich carbonaceous chondrites and their components have a unique isotopic signature extending from an inner Solar System composition toward a (26)Mg*-depleted and (54)Cr-enriched component. This composition is consistent with that expected for thermally unprocessed primordial molecular cloud material before its pollution by stellar-derived (26)Al. The (26)Mg* and (54)Cr compositions of bulk metal-rich chondrites require significant amounts (25-50%) of primordial molecular cloud matter in their precursor material. Given that such high fractions of primordial molecular cloud material are expected to survive only in the outer Solar System, we infer that, similarly to cometary bodies, metal-rich carbonaceous chondrites are samples of planetesimals that accreted beyond the orbits of the gas giants. The lack of evidence for this material in other chondrite groups requires isolation from the outer Solar System, possibly by the opening of disk gaps from the early formation of gas giants.

  15. Application of vitamin E to antagonize SWCNTs-induced exacerbation of allergic asthma.

    PubMed

    Li, Jinquan; Li, Li; Chen, Hanqing; Chang, Qing; Liu, Xudong; Wu, Yang; Wei, Chenxi; Li, Rui; Kwan, Joseph K C; Yeung, King Lun; Xi, Zhuge; Lu, Zhisong; Yang, Xu

    2014-01-01

    The aggravating effects of zero-dimensional, particle-shaped nanomaterials on allergic asthma have been previously investigated, but similar possible effects of one-dimensional shaped nanomaterials have not been reported. More importantly, there are no available means to counteract the adverse nanomaterial effects to allow for their safe use. In this study, an ovalbumin (OVA)-sensitized rat asthma model was established to investigate whether single walled carbon nanotubes (SWCNTs) aggravate allergic asthma. The results showed that SWCNTs in rats exacerbated OVA-induced allergic asthma and that this exacerbation was counteracted by concurrent administration vitamin E. A mechanism involving the elimination of reactive oxygen species, downregulation of Th2 responses, reduced Ig production, and the relief of allergic asthma symptoms was proposed to explain the antagonistic effects of vitamin E. This work could provide a universal strategy to effectively protect people with allergic asthma from SWCNTs or similar nanomaterial-induced aggravating effects. PMID:24589727

  16. Application of vitamin E to antagonize SWCNTs-induced exacerbation of allergic asthma

    PubMed Central

    Li, Jinquan; Li, Li; Chen, Hanqing; Chang, Qing; Liu, Xudong; Wu, Yang; Wei, Chenxi; Li, Rui; Kwan, Joseph K. C.; Yeung, King Lun; Xi, Zhuge; Lu, Zhisong; Yang, Xu

    2014-01-01

    The aggravating effects of zero-dimensional, particle-shaped nanomaterials on allergic asthma have been previously investigated, but similar possible effects of one-dimensional shaped nanomaterials have not been reported. More importantly, there are no available means to counteract the adverse nanomaterial effects to allow for their safe use. In this study, an ovalbumin (OVA)-sensitized rat asthma model was established to investigate whether single walled carbon nanotubes (SWCNTs) aggravate allergic asthma. The results showed that SWCNTs in rats exacerbated OVA-induced allergic asthma and that this exacerbation was counteracted by concurrent administration vitamin E. A mechanism involving the elimination of reactive oxygen species, downregulation of Th2 responses, reduced Ig production, and the relief of allergic asthma symptoms was proposed to explain the antagonistic effects of vitamin E. This work could provide a universal strategy to effectively protect people with allergic asthma from SWCNTs or similar nanomaterial-induced aggravating effects. PMID:24589727

  17. Metal-rich or misclassified? The case of four RR Lyrae stars

    NASA Astrophysics Data System (ADS)

    Molnar, L.; Juhasz, A. L.; Plachy, E.; Szabo, R.

    2016-06-01

    We analysed the light curve of four, apparently extremely metal-rich fundamenta-mode RR Lyrae stars. We identified two stars, MT Tel and ASAS J091803-3022.6 as RRc (first-overtone) pulsators that were misclassified as RRab ones in the ASAS survey. In the case of the other two stars, V397 Gem and ASAS J075127-4136.3, we could not decide conclusively, as they are outliers in the period-Fourier-coefficient space from the loci of both classes, but their photometric metallicities also favour the RRc classification.

  18. Chaunskij: The most highly metamorphosed, shock-modified and metal-rich mesosiderite

    NASA Technical Reports Server (NTRS)

    Petaev, M. I.; Clarke, R. S., Jr.; Olsen, E. J.; Jarosewich, E.; Davis, A. M.; Steele, I. M.; Lipschutz, M. E.; Wang, M.-S.; Clayton, R. N.; Mayeda, T. K.

    1993-01-01

    The 1990 g Chaunskij meteorite was found in 1985 and classified as an anomalous ungrouped iron. It contains approximately 10 vol. percent mono- and polymineralic troilite-phosphate-silicate inclusions, microns to centimeters in size. We proposed its affinity with mesosiderites; here we present mineralogical, chemical, and isotopic data establishing that Chaunskij is the most highly metamorphosed, shock-modified, and metal-rich of the mesosiderites. The most striking manifestation of metamorphism in Chaunskij is the presence in it of a cordierite-bearing assemblage substituting for basalt lithology.

  19. Blue Horizontal-Branch Stars in Old, Metal-rich Stellar Systems

    NASA Astrophysics Data System (ADS)

    Peterson, Ruth C.; Carney, Bruce W.; Dorman, Ben; Green, Elizabeth M.; Landsman, Wayne; Liebert, James; O'Connell, Robert W.; Rood, Robert T.

    2003-05-01

    Twenty years ago, Burstein et al. recognized that the metal-rich globular clusters in the Andromeda galaxy (M31) exhibited anomalously strong Balmer and CN lines compared to Milky Way clusters. They suggested that younger ages might be the cause, unless blue stars above the main-sequence turnoff or on the horizontal branch were uncommonly prominent. Here we test these suggestions by fitting the detailed mid-ultraviolet (2280-3120 Å) and optical (3850-4750 Å) spectra of one moderately metal-rich M31 globular cluster, G1. We explore the effects of a wide range of nonsolar temperatures and abundance ratios, by combining a small set of theoretical stellar spectra, such as those calculated by Peterson, Dorman, & Rood in 2001 using extensively updated atomic line constants. To match the mid-UV fluxes of G1, we find that hot components with Teff>=8000 K must be included. We obtain a very good fit with cool and hot blue horizontal-branch (BHB) stars, but less satisfactory fits for blue straggler stars, those hotter than the main-sequence turnoff. The G1 color-magnitude diagram does show cool BHB stars, and the color of its giant branch supports the metallicity of one-sixth the solar value deduced from the composite spectrum with BHB stars. The turnoff temperature of the best-fit model is consistent with that of turnoff stars in Galactic globular clusters and the field halo, indicating that G1 is comparably old. Because metal-rich cool BHB and extremely blue HB stars have now been found within our own Galaxy-in open clusters, globular clusters, and the field of the bulge-we suggest that these hot HB stars be considered in fitting spectra of metal-rich populations, such as the Andromeda globular clusters, to avoid possible underestimates of their ages. We plan to make the relevant spectral calculations available as part of our Hubble Treasury program. Based on observations with the Hubble Space Telescope, obtained at the Space Telescope Science Institute, which is operated

  20. Coronal Thermal Structure and Abundance of Super-Metal-Rich Late-Type Stars

    NASA Technical Reports Server (NTRS)

    Brickhouse, Nancy; Mushotzky, Richard F. (Technical Monitor)

    2002-01-01

    This report covers the NASA grant NAG5-9943 for Cycle 1 XMM Guest Observer Program. The project is entitled 'Coronal Thermal Structure and Abundances of Super-Metal-Rich Late-Type Stars.' This observation is for grating spectroscopy of 30 Ari, a late-type star with very high metallicity (about twice solar). The goal is to use extreme cases to help understand how abundances change from the photosphere to the corona. The target was obtained by XMM-Newton on 2001 January 16 for 28000 sec. Data processing could not proceed until last fall because the SAS RGS software did not work. A poster was presented at the conference 'New Visions of the X-ray Universe in the XMM-Newton and Chandra Era,' held in Noordwijk 26-30 November 2001. The paper was entitled,'Coronal Abundances and Thermal Structure of the Super-Metal-Rich Star 30 Ari,'. The poster presented analysis of EPIC and RGS data to determine the individual abundances from the star and the emission measure distribution as a function of temperature. Results were compared with previous results on this star by our team using ASCA data.

  1. The Second-Parameter Effect in Metal-Rich Globular Clusters

    NASA Technical Reports Server (NTRS)

    Sweigart, Allen V.

    1999-01-01

    Recent Hubble Space Telescope (HST) observations have shown that the metal-rich globular clusters (GCs) NGC 6388 and NGC 6441 exhibit a pronounced 2nd parameter effect. Ordinarily metal-rich GCs have only a red horizontal-branch (HB) clump. However, NGC 6388 and NGC 6441 also possess an unexpected population of blue HB stars, indicating that some 2nd parameter is operating in these clusters. Quite remarkably, the HBs in both clusters slope upward with decreasing B -V from the red clump to the top of the blue tail. We review the results of ongoing stellar evolution calculations which indicate (1) that NGC 6388 and NGC 6441 might provide a crucial diagnostic for understanding the origin of the 2nd parameter effect, (2) that differences in age or mass loss along the red-giant branch (RGB) - the two most prominent 2nd parameter candidates - cannot explain the HB morphology of these GCs, and (3) that noncanonical effects involving an enhanced helium abundance or rotation can produce upward sloping HBs. Finally we suggest a new metal-depletion scenario which might help to resolve a baffling conundrum concerning the surface gravities of the blue HB stars in these clusters.

  2. Possible discovery of the r-process characteristics in the abundances of metal-rich barium stars

    NASA Astrophysics Data System (ADS)

    Cui, W. Y.; Zhang, B.; Shi, J. R.; Zhao, G.; Wang, W. J.; Niu, P.

    2014-06-01

    Aims: We study the abundance distributions of a sample of metal-rich barium stars provided by Pereira et al. (2011, A&A, 533, A51) to investigate the s- and r-process nucleosynthesis in the metal-rich environment. Methods: We compared the theoretical results predicted by a parametric model with the observed abundances of the metal-rich barium stars. Results: We found that six barium stars have a significant r-process characteristic, and we divided the barium stars into two groups: r-rich barium stars (Cr > 5.0, [La/Nd] < 0) and normal barium stars. The behavior of the r-rich barium stars seems more like that of the metal-poor r-rich and CEMP-r/s stars. We suggest that the most possible formation mechanism for these stars is the s-process pollution, although their abundance patterns can be fitted very well when the pre-enrichment hypothesis is included. That we cannot explain them well using the s-process nucleosynthesis alone may be due to our incomplete knowledge on the production of Nd, Eu, and other relevant elements by the s-process in metal-rich and super metal-rich environments (see details in Pereira et al. 2011).

  3. Near-Infrared Imaging of Six Metal-rich Quasar Absorber Galaxy Fields

    NASA Astrophysics Data System (ADS)

    Straka, Lorrie A.; Kulkarni, Varsha P.; York, Donald G.

    2011-06-01

    Absorption lines in quasar spectra allow us to locate and study intervening galaxies. In order to obtain a clearer picture of these absorber galaxies, we have used the Near-Infrared Camera Fabry-Perot System at Apache Point Observatory to obtain near-infrared broadband images in one or more filters (J and Ks ) of six quasar fields containing metal-rich low-z damped or sub-damped Lyα systems. These data allow us to search for the galaxies and constrain their luminosities. Candidate absorber galaxies are detected at 2farcs01-7farcs38 separation from the quasar in three out of six fields in the J and Ks bands at >3σ level with luminosities ranging from log(L/L sun) = 10.44-10.36 in the J band (for E-Sc type galaxies) and log(L/L sun) = 11.59-10.03 in the Ks band for our detections. We place limits on the remaining fields with no detections of log(L/L sun) <10.83-9.75 for the J band and log(L/L sun) <10.43-10.05 for the Ks band. We are also able to utilize Sloan Digital Sky Survey spectra for each field to calculate optical fluxes and limits as well as limits on star formation rate via [O II]λ3727 emission in spectra. Our data, combined with other recent imaging results for metal-rich absorbers, suggest a possible positive correlation between absorber metallicity and galaxy luminosity, although the samples are still small.

  4. METAL-RICH PLANETARY NEBULAE IN THE OUTER REACHES OF M31

    SciTech Connect

    Balick, B.; Kwitter, K. B.; Corradi, R. L. M.; Henry, R. B. C. E-mail: kkwitter@williams.edu E-mail: henry@ou.edu

    2013-09-01

    Spectroscopic data of two relatively [O III]-luminous planetary nebulae (PNe) have been obtained with the 10.4 m Gran Telescopio Canarias. M174 and M2496 are each {approx}1 Degree-Sign from the center of M31 along opposite sides of its minor axis. The ensemble of these 2 distant PNe plus 16 similarly luminous outer-disk PNe published previously by Kwitter et al. forms a homogeneous group in luminosity, metal content, progenitor mass, age, and kinematics. The main factual findings of our work are (1) O/H (and other low-mass {alpha} elements and their ratios to O) is uniformly solar-like in all 18 PNe ((12 + log(O/H)) = 8.62 {+-} 0.14); (2) the general sky distribution and kinematics of the ensemble much more closely resemble the rotation pattern of the classical disk of M31 than its halo or bulge; (3) the O/H gradient is surprisingly flat beyond R{sub g} {approx} 20 kpc. The PNe are too metal-rich to be bona fide members of M31's disk or halo, and (4) the abundance patterns of the sample are distinct from those in the spiral galaxies M33, M81, and NGC 300. Using standard PN age diagnostic methods, we suggest that all of the PNe formed {approx}2 Gyr ago in a starburst of metal-rich interstellar medium that followed an M31-M33 encounter about 3 Gyr ago. We review supporting evidence from stellar studies. Other more prosaic explanations, such as dwarf galaxy assimilation, are unlikely.

  5. NEAR-INFRARED IMAGING OF SIX METAL-RICH QUASAR ABSORBER GALAXY FIELDS

    SciTech Connect

    Straka, Lorrie A.; Kulkarni, Varsha P.; York, Donald G.

    2011-06-15

    Absorption lines in quasar spectra allow us to locate and study intervening galaxies. In order to obtain a clearer picture of these absorber galaxies, we have used the Near-Infrared Camera Fabry-Perot System at Apache Point Observatory to obtain near-infrared broadband images in one or more filters (J and K{sub s} ) of six quasar fields containing metal-rich low-z damped or sub-damped Ly{alpha} systems. These data allow us to search for the galaxies and constrain their luminosities. Candidate absorber galaxies are detected at 2.''01-7.''38 separation from the quasar in three out of six fields in the J and K{sub s} bands at >3{sigma} level with luminosities ranging from log(L/L{sub sun}) = 10.44-10.36 in the J band (for E-Sc type galaxies) and log(L/L{sub sun}) = 11.59-10.03 in the K{sub s} band for our detections. We place limits on the remaining fields with no detections of log(L/L{sub sun}) <10.83-9.75 for the J band and log(L/L{sub sun}) <10.43-10.05 for the K{sub s} band. We are also able to utilize Sloan Digital Sky Survey spectra for each field to calculate optical fluxes and limits as well as limits on star formation rate via [O II]{lambda}3727 emission in spectra. Our data, combined with other recent imaging results for metal-rich absorbers, suggest a possible positive correlation between absorber metallicity and galaxy luminosity, although the samples are still small.

  6. AH Cam: A metal-rich RR Lyrae star with the shortest known Blazhko period

    NASA Technical Reports Server (NTRS)

    Smith, Horace A.; Matthews, Jaymie M.; Lee, Kevin M.; Williams, Jeffrey; Silbermann, N. A.; Bolte, Michael

    1994-01-01

    Analysis of 746 new V-band observations of the RR Lyrae star AH Cam obtained during 1989 - 1992 clearly show that its light curve cannot be described by a single period. In fact, at first glance, the Fourier spectrum of the photometry resembles that of a double-mode pulsator, with peaks at a fundamental period of 0.3686 d and an apparent secondary period of 0.2628 d. Nevertheless, the dual-mode solution is a poor fit to the data. Rather, we believe that AH Cam is a single-mode RR Lyrae star undergoing the Blazhko effect: periodic modulation of the amplitude and shape of its light curve. What was originally taken to be the period of the second mode is instead the 1-cycle/d alias of a modulation sidelobe in the Fourier spectrum. The data are well described by a modulation period of just under 11 d, which is the shortest Blazhko period reported to date in the literature and confirms the earlier suggestion by Goranskii. A low-resolution spectrum of AH Cam indicates that it is relatively metal rich, with delta-S less than or = 2. Its high metallicity and short modulation period may provide a critical test of at least one theory for the Blazhko effect. Moskalik's internal resonance model makes specific predictions of the growth rate of the fundamental model vs fundamental period. AH Cam falls outside the regime of other known Blazhko variables and resonance model predictions, but these are appropriate for metal-poor RR Lyrae stars. If the theory matches the behavior of AH Cam for a metal-rich stellar model, this would bolster the resonance hypothesis.

  7. Scalability of the Heat and Current Treatment on SWCNTs to Improve their Crystallinity and Thermal and Electrical Conductivities

    NASA Astrophysics Data System (ADS)

    Matsumoto, Naoyuki; Oshima, Azusa; Sakurai, Shunsuke; Yumura, Motoo; Hata, Kenji; Futaba, Don N.

    2015-05-01

    We have investigated the scalability of our post-synthesis graphitization process for single-walled carbon nanotubes (SWCNTs), which applies heat and current to SWCNTs to improve the thermal and electrical conductivities. This investigation was performed by examining the relationship between the processing conditions and the amount of treated SWCNTs. Characterization of all cases of treated SWCNTs showed the same level of improvement of ~3 times to both the thermal and electrical conductivities and that the SWCNTs remained SWCNTs, i.e., no change in diameter or wall number. These results provided evidence that the ability to improve the crystallinity of the SWCNTs was independent of the treatment amount. Further, our results showed that an increase in SWCNT amount required increased applied current density or increased in applied temperature to achieve optimum property improvement. Finally, we found a trade-off between the current density and temperature indicating that either a high current or high temperature was required to achieve the optimum process conditions. These results demonstrated that our heat and current SWCNT treatment was fundamentally scalable and applied towards larger scale (i.e., gram-level or more) amounts of SWCNT.

  8. Scalability of the Heat and Current Treatment on SWCNTs to Improve their Crystallinity and Thermal and Electrical Conductivities.

    PubMed

    Matsumoto, Naoyuki; Oshima, Azusa; Sakurai, Shunsuke; Yumura, Motoo; Hata, Kenji; Futaba, Don N

    2015-01-01

    We have investigated the scalability of our post-synthesis graphitization process for single-walled carbon nanotubes (SWCNTs), which applies heat and current to SWCNTs to improve the thermal and electrical conductivities. This investigation was performed by examining the relationship between the processing conditions and the amount of treated SWCNTs. Characterization of all cases of treated SWCNTs showed the same level of improvement of ~3 times to both the thermal and electrical conductivities and that the SWCNTs remained SWCNTs, i.e., no change in diameter or wall number. These results provided evidence that the ability to improve the crystallinity of the SWCNTs was independent of the treatment amount. Further, our results showed that an increase in SWCNT amount required increased applied current density or increased in applied temperature to achieve optimum property improvement. Finally, we found a trade-off between the current density and temperature indicating that either a high current or high temperature was required to achieve the optimum process conditions. These results demonstrated that our heat and current SWCNT treatment was fundamentally scalable and applied towards larger scale (i.e., gram-level or more) amounts of SWCNT. PMID:26019697

  9. The structure and continuous stoichiometry change of 1DTbBrx@SWCNTs.

    PubMed

    Kiselev, N A; Kumskov, A S; Zhigalina, V G; Vasiliev, A L; Sloan, J; Falaleev, N S; Verbitskiy, N I; Eliseev, A A

    2016-04-01

    HRTEM and HAADF STEM of 1DTbBrx@SWCNT meta-nanotubes reveal three structural modifications of 1D nanocrystals within single wall carbon nanotube channels attributed to a different stoichiometry of the guest crystal. For SWCNTs with diameters Dm > 1.4 nm a most complete tetragonal unit cell is observed. When crystallization occurs inside SWCNT with Dm < 1.4 nm 1D TbBrx crystal deforms a nanotube to elliptical shape in cross section. In this case the 1D crystal unit cell becomes monoclinic, with possible loss of a part of bromine atoms. Two modifications of a monoclinic unit cell appear. One of them is characterized by single or pair vacancies in the structure of the 1D crystal. Another structure is explained by peripheral and central bromine atoms loss. An appearance of such modifications can be stimulated by electron irradiation. The loss of bromine atoms is in agreement with chemical analysis data. Electronic properties of obtained meta-nanotubes are investigated using optical absorption and Raman spectroscopy. It is shown that intercalation of terbium bromide into SWCNTs leads to acceptor doping of SWCNTs. According to local EDX analysis and elemental mapping this doping can arise from significant stoichiometry change in 1D nanocrystal indicating an average Tb:Br atomic ratio of 1:2.8 ± 0.1.

  10. RESPIRATORY EFFECTS OF INHALED METAL-RICH PARTICULATE MATTER (PM) IN RATS: INFLUENCE OF SYSTEMIC ANTIOXIDANT DEPLETION

    EPA Science Inventory

    Metal-mediated generation of reactive oxygen species and resultant oxidative stress has been implicated in the pathogenesis of emission-source PM toxicity. We hypothesized that inducing an antioxidant deficit prior to inhalation of metal-rich PM would worsen adverse health outcom...

  11. A HOT URANUS ORBITING THE SUPER METAL-RICH STAR HD 77338 AND THE METALLICITY-MASS CONNECTION

    SciTech Connect

    Jenkins, J. S.; Hoyer, S.; Jones, M. I.; Rojo, P.; Day-Jones, A. C.; Ruiz, M. T.; Jones, H. R. A.; Tuomi, M.; Barnes, J. R.; Pavlenko, Y. V.; Pinfield, D. J.; Murgas, F.; Ivanyuk, O.; Jordan, A.

    2013-04-01

    We announce the discovery of a low-mass planet orbiting the super metal-rich K0V star HD 77338 as part of our ongoing Calan-Hertfordshire Extrasolar Planet Search. The best-fit planet solution has an orbital period of 5.7361 {+-} 0.0015 days and with a radial velocity semi-amplitude of only 5.96 {+-} 1.74 ms{sup -1}, we find a minimum mass of 15.9{sup +4.7}{sub -5.3} M{sub Circled-Plus }. The best-fit eccentricity from this solution is 0.09{sup +0.25}{sub -0.09}, and we find agreement for this data set using a Bayesian analysis and a periodogram analysis. We measure a metallicity for the star of +0.35 {+-} 0.06 dex, whereas another recent work finds +0.47 {+-} 0.05 dex. Thus HD 77338b is one of the most metal-rich planet-host stars known and the most metal-rich star hosting a sub-Neptune-mass planet. We searched for a transit signature of HD 77338b but none was detected. We also highlight an emerging trend where metallicity and mass seem to correlate at very low masses, a discovery that would be in agreement with the core accretion model of planet formation. The trend appears to show that for Neptune-mass planets and below, higher masses are preferred when the host star is more metal-rich. Also a lower boundary is apparent in the super metal-rich regime where there are no very low mass planets yet discovered in comparison to the sub-solar metallicity regime. A Monte Carlo analysis shows that this low-mass planet desert is statistically significant with the current sample of 36 planets at the {approx}4.5{sigma} level. In addition, results from Kepler strengthen the claim for this paucity of the lowest-mass planets in super metal-rich systems. Finally, this discovery adds to the growing population of low-mass planets around low-mass and metal-rich stars and shows that very low mass planets can now be discovered with a relatively small number of data points using stable instrumentation.

  12. Spitzer IRAC Observations of White Dwarfs. I. Warm Dust at Metal-Rich Degenerates

    NASA Astrophysics Data System (ADS)

    Farihi, J.; Zuckerman, B.; Becklin, E. E.

    2008-02-01

    This paper presents the results of a Spitzer IRAC 3-8 μm photometric search for warm dust orbiting 17 nearby, metal-rich white dwarfs, 15 of which apparently have hydrogen-dominated atmospheres (type DAZ). G166-58, G29-38, and GD 362 manifest excess emission in their IRAC fluxes and the latter two are known to harbor dust grains warm enough to radiate detectable emission at near-infrared wavelengths as short as 2 μm. Their IRAC fluxes display differences compatible with a relatively larger amount of cooler dust at GD 362. G166-58 is presently unique in that it appears to exhibit excess flux only at wavelengths longer than about 5 μm. Evidence is presented that this mid-infrared emission is most likely associated with the white dwarf, indicating that G166-58 bears circumstellar dust no warmer than T ~ 400 K. The remaining 14 targets reveal no reliable mid-infrared excess, indicating the majority of DAZ stars do not have warm debris disks sufficiently opaque to be detected by IRAC.

  13. Active diagenetic formation of metal-rich layers in N. E. Atlantic sediments

    NASA Astrophysics Data System (ADS)

    Wallace, H. E.; Thomson, J.; Wilson, T. R. S.; Weaver, P. P. E.; Higgs, N. C.; Hydes, D. J.

    1988-06-01

    Sediment cores from the Porcupine Abyssal Plain exhibit an indurated layer 0.5-3 cm thick at depths of approximately 50 cm. This is some 15-20 cm below the glacial/Holocene transition as interpreted by radiocarbon dating and the palaeontological criteria of RUDDIMAN and MCINTYRE (1981). The layer is forming currently at the oxic/post-oxic boundary in the sediments, as revealed by pore water data: O 2 and NO -3 are present in solution above the layer, while Fe 2+, Mn 2+, PO 3-4 and NH +4 are present in solution below, and all these species show concentration gradients indicating fluxes into the layer. These data are consistent with the hypothesis for the initiation and sustained formation of such layers proposed by WILSONet al. (1986a,b). The elements Mn, Ni, Co, Fe, P, V, Cu, Zn and U are all enriched to varying degrees in the vicinity of the layer. Some differential stratification of these elements in the vertical, consistent with a redox control, is observed at one site with a 0.5 cm layer, with Mn, Ni and Co above, Fe, P, V and Cu in the layer, and U below. At another site the metal-rich layer has higher Fe and P concentrations and is more indurated. Here all enrichments except Co are contained within a single layer sample, 3 cm thick.

  14. Qatar-1b: a hot Jupiter orbiting a metal-rich K dwarf star

    NASA Astrophysics Data System (ADS)

    Alsubai, K. A.; Parley, N. R.; Bramich, D. M.; West, R. G.; Sorensen, P. M.; Collier Cameron, A.; Latham, D. W.; Horne, K.; Anderson, D. R.; Bakos, G. Á.; Brown, D. J. A.; Buchhave, L. A.; Esquerdo, G. A.; Everett, M. E.; Fżrész, G.; Hartman, J. D.; Hellier, C.; Miller, G. M.; Pollacco, D.; Quinn, S. N.; Smith, J. C.; Stefanik, R. P.; Szentgyorgyi, A.

    2011-10-01

    We report the discovery and initial characterization of Qatar-1b, a hot Jupiter-orbiting metal-rich K dwarf star, the first planet discovered by the Qatar Exoplanet Survey. We describe the strategy used to select candidate transiting planets from photometry generated by the Qatar Exoplanet Survey camera array. We examine the rate of astrophysical and other false positives found during the spectroscopic reconnaissance of the initial batch of candidates. A simultaneous fit to the follow-up radial velocities and photometry of Qatar-1b yields a planetary mass of 1.09 ± 0.08 MJ and a radius of 1.16 ± 0.05 RJ. The orbital period and separation are 1.420 033 ± 0.000 016 d and 0.023 43 ± 0.000 26 au for an orbit assumed to be circular. The stellar density, effective temperature and rotation rate indicate an age greater than 4 Gyr for the system.

  15. A giant stream of metal-rich stars in the halo of the galaxy M31.

    PubMed

    Ibata, R; Irwin, M; Lewis, G; Ferguson, A M; Tanvir, N

    2001-07-01

    Recent observations have revealed streams of gas and stars in the halo of the Milky Way that are the debris from interactions between our Galaxy and some of its dwarf companion galaxies; the Sagittarius dwarf galaxy and the Magellanic clouds. Analysis of the material has shown that much of the halo is made up of cannibalized satellite galaxies, and that dark matter is distributed nearly spherically in the Milky Way. It remains unclear, however, whether cannibalized substructures are as common in the haloes of galaxies as predicted by galaxy-formation theory. Here we report the discovery of a giant stream of metal-rich stars within the halo of the nearest large galaxy, M31 (the Andromeda galaxy). The source of this stream could be the dwarf galaxies M32 and NGC205, which are close companions of M31 and which may have lost a substantial number of stars owing to tidal interactions. The results demonstrate that the epoch of galaxy building still continues, albeit at a modest rate, and that tidal streams may be a generic feature of galaxy haloes.

  16. INNER EDGES OF COMPACT DEBRIS DISKS AROUND METAL-RICH WHITE DWARFS

    SciTech Connect

    Rafikov, Roman R.; Garmilla, Jose A. E-mail: garmilla@astro.princeton.edu

    2012-12-01

    A number of metal-rich white dwarfs (WDs) are known to host compact, dense particle disks, which are thought to be responsible for metal pollution of these stars. In many such systems, the inner radii of disks inferred from their spectra are so close to the WD that particles directly exposed to starlight must be heated above 1500 K and are expected to be unstable against sublimation. To reconcile this expectation with observations, we explore particle sublimation in H-poor debris disks around WDs. We show that because of the high metal vapor pressure the characteristic sublimation temperature in these disks is 300-400 K higher than in their protoplanetary analogs, allowing particles to survive at higher temperatures. We then look at the structure of the inner edges of debris disks and show that they should generically feature superheated inner rims directly exposed to starlight with temperatures reaching 2500-3500 K. Particles migrating through the rim toward the WD (and rapidly sublimating) shield the disk behind them from strong stellar heating, making the survival of solids possible close to the WD. Our model agrees well with observations of WD+disk systems provided that disk particles are composed of Si-rich material such as olivine, and have sizes in the range {approx}0.03-30 cm.

  17. Variable stars in metal-rich globular clusters. IV. Long-period variables in NGC 6496

    SciTech Connect

    Abbas, Mohamad A.; Layden, Andrew C.; Guldenschuh, Katherine A.; Reichart, D. E.; Ivarsen, K. M.; Haislip, J. B.; Nysewander, M. C.; LaCluyze, A. P.; Welch, Douglas L. E-mail: laydena@bgsu.edu

    2015-02-01

    We present VI-band photometry for stars in the metal-rich globular cluster NGC 6496. Our time-series data were cadenced to search for long-period variables (LPVs) over a span of nearly two years, and our variability search yielded the discovery of 13 new variable stars, of which 6 are LPVs, 2 are suspected LPVs, and 5 are short-period eclipsing binaries. An additional star was found in the ASAS database, and we clarify its type and period. We argue that all of the eclipsing binaries are field stars, while five to six of the LPVs are members of NGC 6496. We compare the period–luminosity distribution of these LPVs with those of LPVs in the Large Magellanic Cloud and 47 Tucanae, and with theoretical pulsation models. We also present a VI color–magnitude diagram, display the evolutionary states of the variables, and match isochrones to determine a reddening of E(B−V)= 0.21±0.02 mag and apparent distance modulus of 15.60±0.15 mag.

  18. Variable Stars in the Unusual, Metal-Rich Globular Cluster NGC-6441

    NASA Technical Reports Server (NTRS)

    Pritzl, Barton J.; Smith, Horace A.; Catelan, Marcio; Sweigart, Allen V.; Fisher, Richard R. (Technical Monitor)

    2001-01-01

    We have undertaken a search for variable stars in the metal-rich globular cluster NGC 6441 using time-series BV photometry. The total number of variables found near NGC 6441 has been increased to approx. 104, with 48 new variables being found in this survey. A significant number of the variables are RR Lyrae stars (approx. 46), most of which are probable cluster members. As was noted by Layden et al. (1999), the periods of the fundamental mode RR Lyrae are unusually long compared to field stars of similar metallicity. The existence of these long period RRab stars is consistent with Sweigart & Catelan's (1998) prediction that the horizontal branch of NGC 6441 is unusually bright. This result implies that the metallicity-luminosity relationship for RR Lyrae stars is not universal. We discuss the difficulty in determining the Oosterhoff classification of NGC 6441 due to the unusual nature of its RR Lyrae. A number of ab-type RR Lyrae are found to be both brighter and redder than the other probable RRab found along the horizontal branch, which may be a result of blending with stars of redder color. A smaller than usual gap is found between the shortest period fundamental mode and the longest period first-overtone mode RR Lyrae. We determine the reddening of the cluster to be E(B - V) = 0.51 +/- 0.02 mag, with substantial differential reddening across the face of the cluster. The mean V magnitude of the RR Lyrae is found to be 17.51 +/- 0.02 resulting in a distance of 10.4 to 11.9 kpc, for a range of assumed values of < M(sub V)> for RR Lyrae stars. The possibility that stars in NGC 6441 may span a range in [Fe/H] is also discussed.

  19. On the Origin of Subdwarf B Stars and Related Metal-Rich Binaries

    NASA Astrophysics Data System (ADS)

    Green, E. M.; Liebert, J.; Saffer, R. A.

    2000-12-01

    Mounting evidence from subdwarf B (sdB) stars in the galactic field and their recently discovered counterparts in old open clusters indicates that at least two thirds of local disk sdB stars are binaries. Our recent radial velocity survey showed that binary sdB stars naturally divide into two groups with contrasting spectroscopic and kinematic properties. Those with detectable spectral lines from a cooler companion invariably have periods longer than a year. A larger number with periods on the order of hours or a few days have essentially invisible companions. We suggest that the long period sdB binaries must have been produced by Roche lobe overflow/mass transfer from low mass, metal-rich giants near the first red giant branch tip, without forming a common envelope. The same process should also occur at slightly lower red giant luminosities, producing a wide binary with a helium white dwarf instead of an sdB star. We present new evidence that most short period sdB's result from a common envelope following subsequent Roche lobe overflow of the initial secondary onto one of these white dwarfs. Rare post-common envelope sdB + main sequence (MS) binaries also exist, but available data suggest that most such systems involving lower MS companions probably merge. The two known MS survivors in short period sdB binaries have small and nearly identical masses, implying that the MS secondary must have lost a large fraction of its initial mass along with the envelope of the red giant sdB progenitor. This work was supported by NSF grant AST97-31655.

  20. Extraterrestrial amino acids identified in metal-rich CH and CB carbonaceous chondrites from Antarctica

    NASA Astrophysics Data System (ADS)

    Burton, Aaron S.; Elsila, Jamie E.; Hein, Jason E.; Glavin, Daniel P.; Dworkin, Jason P.

    2013-03-01

    Carbonaceous chondrites contain numerous indigenous organic compounds and could have been an important source of prebiotic compounds required for the origin of life on Earth or elsewhere. Extraterrestrial amino acids have been reported in five of the eight groups of carbonaceous chondrites and are most abundant in CI, CM, and CR chondrites but are also present in the more thermally altered CV and CO chondrites. We report the abundance, distribution, and enantiomeric and isotopic compositions of simple primary amino acids in six metal-rich CH and CB carbonaceous chondrites that have not previously been investigated for amino acids: Allan Hills (ALH) 85085 (CH3), Pecora Escarpment (PCA) 91467 (CH3), Patuxent Range (PAT) 91546 (CH3), MacAlpine Hills (MAC) 02675 (CBb), Miller Range (MIL) 05082 (CB), and Miller Range (MIL) 07411 (CB). Amino acid abundances and carbon isotopic values were obtained by using both liquid chromatography time-of-flight mass spectrometry and fluorescence, and gas chromatography isotope ratio mass spectrometry. The δ13C/12C ratios of multiple amino acids fall outside of the terrestrial range and support their extraterrestrial origin. Extracts of CH chondrites were found to be particularly rich in amino acids (13-16 parts per million, ppm) while CB chondrite extracts had much lower abundances (0.2-2 ppm). The amino acid distributions of the CH and CB chondrites were distinct from the distributions observed in type 2 and 3 CM and CR chondrites and contained elevated levels of β-, γ-, and δ-amino acids compared to the corresponding α-amino acids, providing evidence that multiple amino acid formation mechanisms were important in CH and CB chondrites.

  1. Extraterrestrial Amino Acids Identified in Metal-Rich CH and CB Carbonaceous Chondrites from Antarctica

    NASA Technical Reports Server (NTRS)

    Burton, Aaron S.; Elsila, Jamie E.; Hein, Jason E.; Glavin, Daniel P.; Dworkin, Jason P.

    2013-01-01

    Carbonaceous chondrites contain numerous indigenous organic compounds and could have been an important source of prebiotic compounds required for the origin of life on Earth or elsewhere. Extraterrestrial amino acids have been reported in five of the eight groups of carbonaceous chondrites and are most abundant in CI, CM, and CR chondritesbut are also present in the more thermally altered CV and CO chondrites. We report the abundance, distribution, and enantiomeric and isotopic compositions of simple primary amino acids in six metal-rich CH and CB carbonaceous chondrites that have not previously been investigated for amino acids: Allan Hills (ALH) 85085 (CH3), Pecora Escarpment(PCA) 91467 (CH3), Patuxent Range (PAT) 91546 (CH3), MacAlpine Hills (MAC) 02675(CBb), Miller Range (MIL) 05082 (CB), and Miller Range (MIL) 07411 (CB). Amino acid abundances and carbon isotopic values were obtained by using both liquid chromatography time-of-flight mass spectrometry and fluorescence, and gas chromatography isotope ratiomass spectrometry. The (delta D, delta C-13, delta N-15) ratios of multiple amino acids fall outside of the terrestrial range and support their extraterrestrial origin. Extracts of CH chondrites were found to be particularly rich in amino acids (1316 parts per million, ppm) while CB chondrite extracts had much lower abundances (0.22 ppm). The amino acid distributions of the CH and CB chondrites were distinct from the distributions observed in type 2 and 3 CM and CR chondrites and contained elevated levels of beta-, gamma-, and delta-amino acids compared to the corresponding alpha-amino acids, providing evidence that multiple amino acid formation mechanisms were important in CH and CB chondrites.

  2. Environmental assessment and management of metal-rich wastes generated in acid mine drainage passive remediation systems.

    PubMed

    Macías, Francisco; Caraballo, Manuel A; Nieto, José Miguel

    2012-08-30

    As acid mine drainage (AMD) remediation is increasingly faced by governments and mining industries worldwide, the generation of metal-rich solid residues from the treatments plants is concomitantly raising. A proper environmental management of these metal-rich wastes requires a detailed characterization of the metal mobility as well as an assessment of this new residues stability. The European standard leaching test EN 12457-2, the US EPA TCLP test and the BCR sequential extraction procedure were selected to address the environmental assessment of dispersed alkaline substrate (DAS) residues generated in AMD passive treatment systems. Significant discrepancies were observed in the hazardousness classification of the residues according to the TCLP or EN 12457-2 test. Furthermore, the absence of some important metals (like Fe or Al) in the regulatory limits employed in both leaching tests severely restricts their applicability for metal-rich wastes. The results obtained in the BCR sequential extraction suggest an important influence of the landfill environmental conditions on the metals released from the wastes. To ensure a complete stability of the pollutants in the studied DAS-wastes the contact with water or any other leaching solutions must be avoided and a dry environment needs to be provided in the landfill disposal selected. PMID:22717063

  3. New Feature Observed in the Raman Resonance Excitation Profiles of (6 , 5) -Enriched, Selectively Bundled SWCNTs

    NASA Astrophysics Data System (ADS)

    Hight Walker, A. R.; Simpson, J. R.; Roslyak, O.; Haroz, E.; Telg, H.; Duque, J. G.; Crochet, J. J.; Piryatinski, A.; Doorn, S. K.

    Understanding the photophysics of exciton behavior in single wall carbon nanotube (SWCNT) bundles remains important for opto-electronic device applications. We report resonance Raman spectroscopy (RRS) measurements on (6 , 5) -enriched SWCNTs, dispersed in aqueous solutions and separated using density gradient ultracentrifugation into fractions of increasing bundling. Near-IR to UV absorption spectroscopy shows a redshift and broadening of the main excitonic transitions with increasing bundling. A continuously tunable dye laser coupled to a triple-grating spectrometer affords measurement of Raman resonance excitation profiles (REPs) over a range of wavelengths covering the (6 , 5) -E22 range (505 to 585) nm. REPs of both the radial breathing mode (RBM) and G-band reveal a redshifting and broadening of the (6 , 5) E22 transition energy with increasing bundling. Additionally, we observe an unexpected peak in the REP of bundled SWCNTs, which is shifted lower in energy than the main E22 and is anomalously narrow. We compare these observations to a theoretical model that examines the origin of this peak in relation to bundle polarization-enhanced exciton response.

  4. An Updated Statistical Search for Super-Metal-Rich Stars of Types F, G, and K

    NASA Astrophysics Data System (ADS)

    Taylor, B. J.

    2001-05-01

    Results are reported for an updated version of a published statistical search for super-metal-rich (SMR) stars (Taylor 1996, ApJS 102, 105). By definition, [Fe/H] > +0.2 dex is required for such stars, with false-alarm probabilities p < 0.05. The search is based on two catalogs of homogenized high-dispersion values of [Fe/H] drawn from diverse literature sources. For dwarfs, an updated version of the Taylor (1995, PASP 107, 734) catalog is consulted. For evolved stars, the Taylor (1999, A&AS 143, 523) catalog is searched. A preliminary list of SMR subgiants and dwarfs is unchanged from 1996: ρ 1 Cnc: [Fe/H] = +0.41 +/- 0.046 dex (p = 7 x 10-4). HD 112164: [Fe/H] = +0.36 +/- 0.052 dex (p = 4 x 10-3). η Boo: [Fe/H] = +0.32 +/- 0.029 dex (p = 2 x 10-4). 14 Her: [Fe/H] = +0.39 +/- 0.046 dex (p = 2 x 10-4). μ Ara: [Fe/H] = +0.38 +/- 0.046 dex (p = 4 x 10-3). 31 Aql: [Fe/H] = +0.37 +/- 0.035 dex (p = 2 x 10-5). δ Pav: [Fe/H] = +0.41 +/- 0.046 dex (p = 7 x 10-4). The product of the stated values of p is 9 x 10-21. This is the formal probability that none of the stars are actually SMR. As in 1996, no statistically defensible examples of SMR giants are found. Mu Leo is not an exception to this statement (Taylor 1999, A&AS 344, 655; Taylor 2000, BAAS 32, 1472). The lack of known SMR giants may be due to neglect of promising candidates (listed, for example, by Deming & Butler 1979, AJ 84, 839). For this reason, the existence or nonexistence of SMR giants continues to be an open question. This research has been supported by the BYU College of Physical and Mathematical Sciences.

  5. Structural studies of the metal-rich region in the ternary Ta-Nb-S system

    SciTech Connect

    Yao, Xiaoqiang.

    1991-10-07

    Six new solid solution type compounds have been prepared using high temperature techniques and characterized by means of single crystal x-ray techniques during a study of the metal-rich region of the ternary Ta-Nb-S system. The structures of Nb{sub x}Ta{sub 11-x}S{sub 4} are reminiscent of niobium-rich sulfides, rather than of tantalum-rich sulfides. The coordinations of sulfur are capped trigonal prismatic while the metal coordinations are capped distorted cubic prismatic for Nb{sub x}Ta{sub 11-x}S{sub 4}, and capped distorted cubic prismatic and pentagonal prismatic for Nb{sub 12-x}Ta{sub x}S{sub 4}. The structures of Nb{sub x}Ta{sub 5-x}S{sub 2} contain homoatomic layers sequenced S-M3-M2-M1-M2-M3-S (M is mixed Nb, Ta) generating six-layer sheets, respectively. Weak S-S interactions at 3.26 and 3.19{Angstrom} between sheets contrast with the M-M binding within and between the sheets in these two novel layered compounds. The former are presumably responsible for the observed graphitic slippage of the samples. Nb{sub 21-x}Ta{sub x}S{sub 8} and Nb{sub x}Ta{sub 2-x}S are isostructural with Nb{sub 21}S{sub 8} and Ta{sub 2}S, respectively. Extended Hueckel band calculations were carried out for two layered compounds, Nb{sub x}Ta{sub 5-x}S{sub 2} (x {approx} 1.72) and Nb{sub x}ta{sub 2-x}S (x {approx} 0.95). Based upon band calculations metallic properties can be expected for these two layered compounds. The relative preference of the metal sites for the two metal elements (Ta, Nb) in two layered compounds is explained by the results of the band calculations. 17 figs., 31 tabs., 80 refs.

  6. Analysis of adsorption properties of typical partial discharge gases on Ni-SWCNTs using density functional theory

    NASA Astrophysics Data System (ADS)

    Zhang, Xiaoxing; Gui, Yingang; Xiao, Hanyan; Zhang, Ying

    2016-08-01

    To develop novel nanomaterial for online detection and diagnosis of insulated faults in SF6 insulated equipment, the nickel-doped single wall carbon nanotubes (Ni-SWCNTs) are proposed and its sensing capabilities for the measurement of typical decomposition products (SO2, SOF2 and SO2F2) of SF6 insulated gas are investigated in this work. The geometric configurations of decomposition products and (8, 0) zigzag Ni-SWCNTs, and adsorption properties are studied based on the first-principle density functional theory (DFT) methods implemented in the DMol3 package of Materials Studio. Three interaction models, single molecule, double identical molecules and double foreign molecules adsorption, have been studied to fully characterize the gas sensing mechanism under different situations. Simulation results reveal that Ni-SWCNTs have different sensitivity and selectivity to SO2 than SOF2 and SO2F2. The conductivity of Ni-SWCNTs increases in the following order: SO2 > SOF2 after SO2 and SOF2 adsorption. Conversely, the adsorption of SO2F2 onto Ni-SWCNTs slightly decreases its conductivity.

  7. Long-term follow-up of lung biodistribution and effect of instilled SWCNTs using multiscale imaging techniques

    NASA Astrophysics Data System (ADS)

    Faraj, Achraf Al; Bessaad, Amine; Cieslar, Katarzyna; Lacroix, Ghislaine; Canet-Soulas, Emmanuelle; Crémillieux, Yannick

    2010-04-01

    Due to their distinctive properties, single-walled carbon nanotubes (SWCNTs) are being more and more extensively used in nanotechnology, with prospects in nanomedicine. It would therefore appear essential to develop and apply appropriate imaging tools for detecting and evaluating their biological impacts with the prospect of medical applications or in the situation of accidental occupational exposure. It has been shown recently that raw SWCNTs with metallic impurities can be noninvasively detected in the lungs by hyperpolarized 3helium (HP-3He) MRI. Moreover raw and purified SWCNTs had no acute biological effect. The purpose of the present longitudinal study was to investigate long-term follow-up by imaging, as well as chronic lung effects. In a 3-month follow-up study, multiscale imaging techniques combining noninvasive HP-3He and proton (H) MRI to ex vivo light (histopathological analysis) and transmission electron microscopy (TEM) were used to assess the biodistribution and biological effects of intrapulmonary instilled raw SWCNTs. Specific in vivo detection of carbon nanotubes with MRI relied on their intrinsic metal impurities. MRI also has the ability to evaluate tissue inflammation by the follow-up of local changes in signal intensity. MRI and ex vivo microscopy techniques showed that granulomatous and inflammatory reactions were produced in a time and dose dependent manner by instilled raw SWCNTs.

  8. Analysis of the world distribution of metal-rich subsea manganese nodules

    USGS Publications Warehouse

    McKelvey, Vincent Ellis; Wright, Nancy A.; Bowen, Roger W.

    1983-01-01

    principal metals present, but the three metal types described above do not include the maximum reported values for several other elements, such as titanium (8.9 percent), vanadium (0.5), zinc (9.0), and lead (0.75). It seems possible, therefore, that there may be other kinds of metal-rich types, some of which may have p6tential economic value. Many of the variations in nodule composition are in large part a function of variations in mineral composition, to which many factors contribute. Some of the regional variations can be broadly related to oceanic circulation, basin morphology, and depth, but a better understanding of ocean processes and regional oceanography and geology is needed to explain all the variations observed in the composition of manganese nodules.

  9. High-Resolution Spectroscopy of Metal-rich Giants in ω Centauri: First Indication of Type Ia Supernova Enrichment

    NASA Astrophysics Data System (ADS)

    Pancino, E.; Pasquini, L.; Hill, V.; Ferraro, F. R.; Bellazzini, M.

    2002-04-01

    We have obtained high-resolution, high signal-to-noise ratio spectra for six red giants in ω Centauri: three belong to the recently discovered metal-rich red giant branch (RGB-a as defined by Pancino et al.) and three to the metal-intermediate population (RGB-MInt). Accurate iron, copper, and α-element (Ca and Si) abundances have been derived and discussed. In particular, we have obtained the first direct abundance determination based on high-resolution spectroscopy for the RGB-a population, <[Fe/H]>=-0.60+/-0.15. Although this value is lower than previous estimates based on calcium triplet measurements, we confirm that this population is the most metal-rich in ω Cen. In addition, we have found a significant difference in the α-element enhancement of the two populations. The three RGB-MInt stars have the expected overabundance, typical of halo and globular cluster stars: <[α/Fe]>=0.29+/-0.01. The three RGB-a stars show, instead, a significantly lower α-enhancement: <[α/Fe]>=0.10+/-0.04. We have also detected an increasing trend of [Cu/Fe] with metallicity, similar to the one observed for field stars by Sneden et al. The observational facts presented in this Letter, if confirmed by larger samples of giants, are the first indication that supernovae Type Ia ejecta have contaminated the medium from which the metal-rich RGB-a stars have formed. The implications for current scenarios on the formation and evolution of ω Cen are briefly discussed. Based on Ultraviolet-Visual Echelle Spectrograph observations collected at the European Southern Observatory, Paranal, Chile, within the observing program 165.L-0263. Also based on Wide-Field Imager observations collected at La Silla, Chile, within the observing programs 62.L-0354 and 64.L-0439.

  10. An age difference of two billion years between a metal-rich and a metal-poor globular cluster.

    PubMed

    Hansen, B M S; Kalirai, J S; Anderson, J; Dotter, A; Richer, H B; Rich, R M; Shara, M M; Fahlman, G G; Hurley, J R; King, I R; Reitzel, D; Stetson, P B

    2013-08-01

    Globular clusters trace the formation history of the spheroidal components of our Galaxy and other galaxies, which represent the bulk of star formation over the history of the Universe. The clusters exhibit a range of metallicities (abundances of elements heavier than helium), with metal-poor clusters dominating the stellar halo of the Galaxy, and higher-metallicity clusters found within the inner Galaxy, associated with the stellar bulge, or the thick disk. Age differences between these clusters can indicate the sequence in which the components of the Galaxy formed, and in particular which clusters were formed outside the Galaxy and were later engulfed along with their original host galaxies, and which were formed within it. Here we report an absolute age of 9.9 ± 0.7 billion years (at 95 per cent confidence) for the metal-rich globular cluster 47 Tucanae, determined by modelling the properties of the cluster's white-dwarf cooling sequence. This is about two billion years younger than has been inferred for the metal-poor cluster NGC 6397 from the same models, and provides quantitative evidence that metal-rich clusters like 47 Tucanae formed later than metal-poor halo clusters like NGC 6397.

  11. Oxidative stress and reduced responsiveness of challenged circulating leukocytes following pulmonary instillation of metal-rich particulate matter in rats

    PubMed Central

    2014-01-01

    Welding fume is an exposure that consists of a mixture of metal-rich particulate matter with gases (ozone, carbon monoxide) and/or vapors (VOCs). Data suggests that welders are immune compromised. Given the inability of pulmonary leukocytes to properly respond to a secondary infection in animal models, the question arose whether the dysfunction persisted systemically. Our aim was to evaluate the circulating leukocyte population in terms of cellular activation, presence of oxidative stress, and functionality after a secondary challenge, following welding fume exposure. Rats were intratracheally instilled (ITI) with PBS or 2 mg of welding fume collected from a stainless steel weld. Rats were sacrificed 4 and 24 h post-exposure and whole blood was collected. Whole blood was used for cellular differential counts, RNA isolation with subsequent microarray and Ingenuity Pathway Analysis, and secondary stimulation with LPS utilizing TruCulture technology. In addition, mononuclear cells were isolated 24 h post-exposure to measure oxidative stress by flow cytometry and confocal microscopy. Welding fume exposure had rapid effects on the circulating leukocyte population as identified by relative mRNA expression changes. Instillation of welding fume reduced inflammatory protein production of circulating leukocytes when challenged with the secondary stimulus LPS. The effects were not related to transcription, but were observed in conjunction with oxidative stress. These findings support previous studies of an inadequate pulmonary immune response following a metal-rich exposure and extend those findings showing leukocyte dysfunction occurs systemically. PMID:25123171

  12. An age difference of two billion years between a metal-rich and a metal-poor globular cluster.

    PubMed

    Hansen, B M S; Kalirai, J S; Anderson, J; Dotter, A; Richer, H B; Rich, R M; Shara, M M; Fahlman, G G; Hurley, J R; King, I R; Reitzel, D; Stetson, P B

    2013-08-01

    Globular clusters trace the formation history of the spheroidal components of our Galaxy and other galaxies, which represent the bulk of star formation over the history of the Universe. The clusters exhibit a range of metallicities (abundances of elements heavier than helium), with metal-poor clusters dominating the stellar halo of the Galaxy, and higher-metallicity clusters found within the inner Galaxy, associated with the stellar bulge, or the thick disk. Age differences between these clusters can indicate the sequence in which the components of the Galaxy formed, and in particular which clusters were formed outside the Galaxy and were later engulfed along with their original host galaxies, and which were formed within it. Here we report an absolute age of 9.9 ± 0.7 billion years (at 95 per cent confidence) for the metal-rich globular cluster 47 Tucanae, determined by modelling the properties of the cluster's white-dwarf cooling sequence. This is about two billion years younger than has been inferred for the metal-poor cluster NGC 6397 from the same models, and provides quantitative evidence that metal-rich clusters like 47 Tucanae formed later than metal-poor halo clusters like NGC 6397. PMID:23903747

  13. Biogeochemical characterization of an undisturbed highly acidic, metal-rich bryophyte habitat, east-central Alaska, U.S.A.

    USGS Publications Warehouse

    Gough, L.P.; Eppinger, R.G.; Briggs, P.H.; Giles, S.

    2006-01-01

    We report on the geochemistry of soil and bryophyte-laden sediment and on the biogeochemistry of willows growing in an undisturbed volcanogenic massive sulfide deposit in the Alaska Range ecoregion of east-central Alaska. We also describe an unusual bryophyte assemblage found growing in the acidic metal-rich waters that drain the area. Ferricrete-cemented silty alluvial sediments within seeps and streams are covered with the liverwort Gymnocolea inflata whereas the mosses Polytrichum commune and P. juniperinum inhabit the area adjacent to the water and within the splash zone. Both the liverwort-encrusted sediment and Polytrichum thalli have high concentrations of major and trace metal cations (e.g., Al, As, Cu, Fe, Hg, La, Mn, Pb, and Zn). Soils in the area do not reflect the geochemical signature of the mineral deposit and we postulate they are influenced by the chemistry of eolian sediments derived from outside the deposit area. The willow, Salix pulchra, growing mostly within and adjacent to the larger streams, has much higher concentrations of Al, As, Cd, Cr, Fe, La, Pb, and Zn when compared to the same species collected in non-mineralized areas of Alaska. The Cd levels are especially high and are shown to exceed, by an order of magnitude, levels demonstrated to be toxic to ptarmigan in Colorado. Willow, growing in this naturally occurring metal-rich Red Mountain alteration zone, may adversely affect the health of browsing animals. ?? 2006 Regents of the University of Colorado.

  14. Studies of high temperature ternary phases in mixed-metal-rich early transition metal sulfide and phosphide systems

    SciTech Connect

    Marking, G.A.

    1994-01-04

    Investigations of ternary mixed early transition metal-rich sulfide and phosphide systems resulted in the discovery of new structures and new phases. A new series of Zr and Hf - group V transition metal - sulfur K-phases was synthesized and crystallographically characterized. When the group V transition metal was Nb or Ta, the unit cell volume was larger than any previously reported K-phase. The presence of adventitious oxygen was determined in two K-phases through a combination of neutron scattering and X-ray diffraction experiments. A compound Hf{sub 10}Ta{sub 3}S{sub 3} was found to crystallize in a new-structure type similar to the known gamma brasses. This structure is unique in that it is the only reported {open_quotes}stuffed{close_quotes} gamma-brass type structure. The metal components, Hf and Ta, are larger in size and more electropositive than the metals found in normal gamma brasses (e.g. Cu and Zn) and because of the larger metallic radii, sulfur can be incorporated into the structure where it plays an integral role in stabilizing this phase relative to others. X-ray single-crystal, X-ray powder and neutron powder refinements were performed on this structure. A new structure was found in the ternary Nb-Zr-P system which has characteristics in common with many known early transition metal-rich sulfides, selenides, and phosphides. This structure has the simplest known interconnection of the basic building blocks known for this structural class. Anomalous scattering was a powerful tool for differentiating between Zr and Nb when using Mo K{alpha} X-radiation. The compounds ZrNbP and HfNbP formed in the space group Prima with the simple Co{sub 2}Si structure which is among the most common structures found for crystalline solid materials. Solid solution compounds in the Ta-Nb-P, Ta-Zr-P, Nb-Zr-P, Hf-Nb-P, and Hf-Zr-S systems were crystallographically characterized. The structural information corroborated ideas about bonding in metal-rich compounds.

  15. Enhanced cold wall CVD reactor growth of horizontally aligned single-walled carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Mu, Wei; Kwak, Eun-Hye; Chen, Bingan; Huang, Shirong; Edwards, Michael; Fu, Yifeng; Jeppson, Kjell; Teo, Kenneth; Jeong, Goo-Hwan; Liu, Johan

    2016-05-01

    HASynthesis of horizontally-aligned single-walled carbon nanotubes (HA-SWCNTs) by chemical vapor deposition (CVD) directly on quartz seems very promising for the fabrication of future nanoelectronic devices. In comparison to hot-wall CVD, synthesis of HA-SWCNTs in a cold-wall CVD chamber not only means shorter heating, cooling and growth periods, but also prevents contamination of the chamber. However, since most synthesis of HA-SWCNTs is performed in hot-wall reactors, adapting this well-established process to a cold-wall chamber becomes extremely crucial. Here, in order to transfer the CVD growth technology from a hot-wall to a cold-wall chamber, a systematic investigation has been conducted to determine the influence of process parameters on the HA-SWCNT's growth. For two reasons, the cold-wall CVD chamber was upgraded with a top heater to complement the bottom substrate heater; the first reason to maintain a more uniform temperature profile during HA-SWCNTs growth, and the second reason to preheat the precursor gas flow before projecting it onto the catalyst. Our results show that the addition of a top heater had a significant effect on the synthesis. Characterization of the CNTs shows that the average density of HA-SWCNTs is around 1 - 2 tubes/ μm with high growth quality as shown by Raman analysis. [Figure not available: see fulltext.

  16. Endangered New Caledonian endemic mushroom coral Cantharellus noumeae in turbid, metal-rich, natural and artificial environments.

    PubMed

    Gilbert, Antoine; Heintz, Tom; Hoeksema, Bert W; Benzoni, Francesca; Fernandez, Jean Michel; Fauvelot, Cécile; Andréfouët, Serge

    2015-11-15

    Since its description in 1984, little attention has been paid to the New Caledonian endemic mushroom coral Cantharellus noumeae (Fungiidae), an IUCN Red-listed, endangered coral species. Our study presents the first ever quantitative assessment conducted on C. noumeae populations for two contrasting sites in the same turbid bay. Sites differed by their substrates of artificial or natural origins. Metal concentrations of superficial sediment were measured. C. noumeae was found in high densities in metal-rich and turbid environments at both locations, reaching up to 288 individuals per 50m(2). It was 3.5 times more abundant on natural rock than on artificial substrates. Recruitment was also higher proportionally on rock (47% vs 7-14%). The composition of the associated coral communities included 30-37 species occurring in low densities. Our findings clarify the environmental niche of this species and its colonization potential, in order to eventually better characterize its conservation status. PMID:26342390

  17. Endangered New Caledonian endemic mushroom coral Cantharellus noumeae in turbid, metal-rich, natural and artificial environments.

    PubMed

    Gilbert, Antoine; Heintz, Tom; Hoeksema, Bert W; Benzoni, Francesca; Fernandez, Jean Michel; Fauvelot, Cécile; Andréfouët, Serge

    2015-11-15

    Since its description in 1984, little attention has been paid to the New Caledonian endemic mushroom coral Cantharellus noumeae (Fungiidae), an IUCN Red-listed, endangered coral species. Our study presents the first ever quantitative assessment conducted on C. noumeae populations for two contrasting sites in the same turbid bay. Sites differed by their substrates of artificial or natural origins. Metal concentrations of superficial sediment were measured. C. noumeae was found in high densities in metal-rich and turbid environments at both locations, reaching up to 288 individuals per 50m(2). It was 3.5 times more abundant on natural rock than on artificial substrates. Recruitment was also higher proportionally on rock (47% vs 7-14%). The composition of the associated coral communities included 30-37 species occurring in low densities. Our findings clarify the environmental niche of this species and its colonization potential, in order to eventually better characterize its conservation status.

  18. A sweet spot for highly efficient growth of vertically aligned single-walled carbon nanotube forests enabling their unique structures and properties

    NASA Astrophysics Data System (ADS)

    Chen, Guohai; Davis, Robert C.; Futaba, Don N.; Sakurai, Shunsuke; Kobashi, Kazufumi; Yumura, Motoo; Hata, Kenji

    2015-12-01

    We investigated the correlation between growth efficiency and structural parameters of single-walled carbon nanotube (SWCNT) forests and report the existence of a SWCNT ``sweet spot'' in the CNT diameter and spacing domain for highly efficient synthesis. Only within this region could SWCNTs be grown efficiently. Through the investigation of the growth rates for ~340 CNT forests spanning diameters from 1.3 to 8.0 nm and average spacing from 5 to 80 nm, this ``sweet spot'' was found to exist because highly efficient growth was constrained by several mechanistic boundaries that either hindered the formation or reduced the growth rate of SWCNT forests. Specifically, with increased diameter SWCNTs transitioned to multiwalled CNTs (multiwall border), small diameter SWCNTs could only be grown at low growth rates (low efficiency border), sparse SWCNTs lacked the requirements to vertically align (lateral growth border), and high density catalysts could not be prepared (high catalyst density border). As a result, the SWCNTs synthesized within this ``sweet spot'' possessed a unique set of characteristics vital for the development applications, such as large diameter, long, aligned, defective, and high specific surface area.We investigated the correlation between growth efficiency and structural parameters of single-walled carbon nanotube (SWCNT) forests and report the existence of a SWCNT ``sweet spot'' in the CNT diameter and spacing domain for highly efficient synthesis. Only within this region could SWCNTs be grown efficiently. Through the investigation of the growth rates for ~340 CNT forests spanning diameters from 1.3 to 8.0 nm and average spacing from 5 to 80 nm, this ``sweet spot'' was found to exist because highly efficient growth was constrained by several mechanistic boundaries that either hindered the formation or reduced the growth rate of SWCNT forests. Specifically, with increased diameter SWCNTs transitioned to multiwalled CNTs (multiwall border), small

  19. Polarization-selective alignment of a carbon nanotube film by using femtosecond laser ablation

    NASA Astrophysics Data System (ADS)

    Choi, S. B.; Byeon, C. C.; Park, D. J.; Jeong, M. S.

    2016-01-01

    We report on a considerable alignment of single-walled carbon nanotubes (SWCNTs) in randomly oriented bundles, by using a simple drop-and-dry method and irradiation with high-intensity femtosecond laser pulses. A remarkable third-harmonic generation was observed after irradiation with the laser pulses, whereas a narrow-band white-light continuum was generated in the as-prepared films. This observation, combined with scanning electron microscopy images, confirmed the high degree of alignment of the SWCNTs. In contrast to the pulsed irradiation of carbon soot, the powerdependent laser irradiation of a highly-purified SWCNT film show polarization-dependent ablation of individual nanotubes caused by polarization-dependent absorption. Raman spectroscopy results confirmed the presence of fractured nanotubes caused by the ablation processes. Polarizationresolved absorption spectroscopy results revealed that the aligned SWCNT film had potential usage in optical polarizers.

  20. Single-Walled Carbon Nanotubes (SWCNTs), as a Novel Sorbent for Determination of Mercury in Air

    PubMed Central

    Golbabaei, Farideh; Ebrahimi, Ali; Shirkhanloo, Hamid; Koohpaei, Alireza; Faghihi-Zarandi, Ali

    2016-01-01

    Background: Based on the noticeable toxicity and numerous application of mercury in industries, removal of mercury vapor through sorbent is an important environmental challenge. Purpose of the Study: Due to their highly porous and hollow structure, large specific surface area, light mass density and strong interaction, Single-Walled Carbon Nanotubes (SWCNTs) sorbent were selected for this investigation. Methods: In this study, instrumental conditions, method procedure and different effective parameters such as adsorption efficiency, desorption capacity, time, temperature and repeatability as well as retention time of adsorbed mercury were studied and optimized. Also, mercury vapor was determined by cold vapor atomic absorption spectrometry (CV-AAS). Obtained data were analyzed by Independent T- test, Multivariate linear regression and one way–ANOVA finally. Results: For 80 mg nanotubes, working range of SWCNT were achieved 0.02-0.7 μg with linear range (R2=0.994). Our data revealed that maximum absorption capacity was 0.5 μg g-1 as well as limit of detection (LOD) for studied sorbent was 0.006 μg. Also, optimum time and temperature were reported, 10 min and 250 °C respectively. Retention time of mercury on CNTs for three weeks was over 90%. Results of repeated trials indicated that the CNTs had long life, so that after 30 cycles of experiments, efficiency was determined without performance loss. Conclusion: Results showed that carbon nanotubes have high potential for efficient extraction of mercury from air and can be used for occupational and environmental purposes. The study of adsorption properties of CNTs is recommended. PMID:26925918

  1. THE EFFECT OF SECOND-GENERATION POPULATIONS ON THE INTEGRATED COLORS OF METAL-RICH GLOBULAR CLUSTERS IN EARLY-TYPE GALAXIES

    SciTech Connect

    Chung, Chul; Lee, Sang-Yoon; Yoon, Suk-Jin; Lee, Young-Wook

    2013-05-20

    The mean color of globular clusters (GCs) in early-type galaxies is in general bluer than the integrated color of halo field stars in host galaxies. Metal-rich GCs often appear more associated with field stars than metal-poor GCs, yet show bluer colors than their host galaxy light. Motivated by the discovery of multiple stellar populations in Milky Way GCs, we present a new scenario in which the presence of second-generation (SG) stars in GCs is responsible for the color discrepancy between metal-rich GCs and field stars. The model assumes that the SG populations have an enhanced helium abundance as evidenced by observations, and it gives a good explanation of the bluer optical colors of metal-rich GCs than field stars as well as strong Balmer lines and blue UV colors of metal-rich GCs. Ours may be complementary to the recent scenario suggesting the difference in stellar mass functions (MFs) as an origin for the GC-to-star color offset. A quantitative comparison is given between the SG and MF models.

  2. Comparative Transcriptomic Analysis of the Response of Dunaliella acidophila (Chlorophyta) to Short-Term Cadmium and Chronic Natural Metal-Rich Water Exposures.

    PubMed

    Puente-Sánchez, Fernando; Olsson, Sanna; Aguilera, Angeles

    2016-10-01

    Heavy metals are toxic compounds known to cause multiple and severe cellular damage. However, acidophilic extremophiles are able to cope with very high concentrations of heavy metals. This study investigated the stress response under natural environmental heavy metal concentrations in an acidophilic Dunaliella acidophila. We employed Illumina sequencing for a de novo transcriptome assembly and to identify changes in response to high cadmium concentrations and natural metal-rich water. The photosynthetic performance was also estimated by pulse amplitude-modulated (PAM) fluorescence. Transcriptomic analysis highlights a number of processes mainly related to a high constitutive expression of genes involved in oxidative stress and response to reactive oxygen species (ROS), even in the absence of heavy metals. Photosynthetic activity seems to be unaltered under short-term exposition to Cd and chronic exposure to natural metal-rich water, probably due to an increase in the synthesis of structural photosynthetic components preserving their functional integrity. An overrepresentation of Gene Ontology (GO) terms related to metabolic activities, transcription, and proteosomal catabolic process was observed when D. acidophila grew under chronic exposure to natural metal-rich water. GO terms involved in carbohydrate metabolic process, reticulum endoplasmic and Golgi bodies, were also specifically overrepresented in natural metal-rich water library suggesting an endoplasmic reticulum stress response. PMID:27484342

  3. Improvement of the fracture toughness of hydroxyapatite (HAp) by incorporation of carboxyl functionalized single walled carbon nanotubes (CfSWCNTs) and nylon.

    PubMed

    Khanal, S P; Mahfuz, H; Rondinone, A J; Leventouri, Th

    2016-03-01

    The potential of improving the fracture toughness of synthetic hydroxyapatite (HAp) by incorporating carboxyl functionalized single walled carbon nanotubes (CfSWCNTs) and polymerized ε-caprolactam (nylon) was studied. A series of HAp samples with CfSWCNTs concentrations varying from 0 to 1.5 wt.%, without, and with nylon addition was prepared. X-ray diffraction (XRD), Scanning Electron Microscopy (SEM), and Transmission Electron Microscopy (TEM) were used to characterize the samples. The three point bending test was applied to measure the fracture toughness of the composites. A reproducible value of 3.6±0.3 MPa.√m was found for samples containing 1 wt.% CfSWCNTs and nylon. This value is in the range of the cortical bone fracture toughness. Increase of the CfSWCNTs content results to decrease of the fracture toughness, and formation of secondary phases.

  4. Improvement of the fracture toughness of hydroxyapatite (HAp) by incorporation of carboxyl functionalized single walled carbon nanotubes (CfSWCNTs) and nylon

    DOE PAGES

    Khanal, Suraj P.; Mahfuz, Hassan; Rondinone, Adam Justin; Leventouri, Th.

    2015-11-12

    The potential of improving the fracture toughness of synthetic hydroxyapatite (HAp) by incorporating carboxyl functionalized single walled carbon nanotubes (CfSWCNTs) and polymerized ε-caprolactam (nylon) was researched. A series of HAp samples with CfSWCNTs concentrations varying from 0 to 1.5 wt.%, without, and with nylon addition was prepared. X-ray diffraction (XRD), Scanning Electron Microscopy (SEM), and Transmission Electron Microscopy (TEM) were used to characterize the samples. The three point bending test was applied to measure the fracture toughness of the composites. A reproducible value of 3.6 ± 0.3 MPa.√m was found for samples containing 1 wt.% CfSWCNTs and nylon. This valuemore » is in the range of the cortical bone fracture toughness. Lastly, the increase of the CfSWCNTs content results to decrease of the fracture toughness, and formation of secondary phases.« less

  5. Improvement of the fracture toughness of hydroxyapatite (HAp) by incorporation of carboxyl functionalized single walled carbon nanotubes (CfSWCNTs) and nylon

    SciTech Connect

    Khanal, Suraj P.; Mahfuz, Hassan; Rondinone, Adam Justin; Leventouri, Th.

    2015-11-12

    The potential of improving the fracture toughness of synthetic hydroxyapatite (HAp) by incorporating carboxyl functionalized single walled carbon nanotubes (CfSWCNTs) and polymerized ε-caprolactam (nylon) was researched. A series of HAp samples with CfSWCNTs concentrations varying from 0 to 1.5 wt.%, without, and with nylon addition was prepared. X-ray diffraction (XRD), Scanning Electron Microscopy (SEM), and Transmission Electron Microscopy (TEM) were used to characterize the samples. The three point bending test was applied to measure the fracture toughness of the composites. A reproducible value of 3.6 ± 0.3 MPa.√m was found for samples containing 1 wt.% CfSWCNTs and nylon. This value is in the range of the cortical bone fracture toughness. Lastly, the increase of the CfSWCNTs content results to decrease of the fracture toughness, and formation of secondary phases.

  6. One-step electrochemically co-assembled redox-active [Ru(bpy)2(tatp)]2+-BSA-SWCNTs hybrid film for non-redox protein biosensors.

    PubMed

    Ji, Shi-Bo; Yan, Zhi-Hong; Wu, Jun-Wen; Chen, Lin-Lin; Li, Hong

    2013-01-15

    A redox-active [Ru(bpy)(2)(tatp)](2+)-BSA-SWCNTs (bpy=2,2'-bipyridine, tatp=1,4,8,9-tetra-aza-triphenylene, BSA=bovine serum albumin, SWCNTs=single-walled carbon nanotubes) hybrid film is fabricated on an indium-tin oxide (ITO) electrode via one-step electrochemical co-assembly approach. BSA is inherently dispersive and therefore served as the linking mediator of SWCNTs, which facilitate the redox reactions of [Ru(bpy)(2)(tatp)](2+) employed as a reporter of BSA. The evidences from differential pulse voltammetry, cyclic voltammetry, scanning electron microscope, emission spectroscopy and fluorescence microscope reveal that the [Ru(bpy)(2)(tatp)](2+)-BSA-SWCNTs hybrid can be electrochemically co-assembled on the ITO electrode, showing two pairs of well-defined Ru(II)-based redox waves. Furthermore, the electrochemical co-assembly of the [Ru(bpy)(2)(tatp)](2+)-BSA-SWCNTs hybrid is found to be strongly dependent on the simultaneous presence of BSA and SWCNTs, indicating a good linear response to BSA in the range from 6 to 50mgL(-1). The results from this study provide an electrochemical co-assembly method for the development of non-redox protein biosensors.

  7. One-step electrochemically co-assembled redox-active [Ru(bpy)2(tatp)]2+-BSA-SWCNTs hybrid film for non-redox protein biosensors.

    PubMed

    Ji, Shi-Bo; Yan, Zhi-Hong; Wu, Jun-Wen; Chen, Lin-Lin; Li, Hong

    2013-01-15

    A redox-active [Ru(bpy)(2)(tatp)](2+)-BSA-SWCNTs (bpy=2,2'-bipyridine, tatp=1,4,8,9-tetra-aza-triphenylene, BSA=bovine serum albumin, SWCNTs=single-walled carbon nanotubes) hybrid film is fabricated on an indium-tin oxide (ITO) electrode via one-step electrochemical co-assembly approach. BSA is inherently dispersive and therefore served as the linking mediator of SWCNTs, which facilitate the redox reactions of [Ru(bpy)(2)(tatp)](2+) employed as a reporter of BSA. The evidences from differential pulse voltammetry, cyclic voltammetry, scanning electron microscope, emission spectroscopy and fluorescence microscope reveal that the [Ru(bpy)(2)(tatp)](2+)-BSA-SWCNTs hybrid can be electrochemically co-assembled on the ITO electrode, showing two pairs of well-defined Ru(II)-based redox waves. Furthermore, the electrochemical co-assembly of the [Ru(bpy)(2)(tatp)](2+)-BSA-SWCNTs hybrid is found to be strongly dependent on the simultaneous presence of BSA and SWCNTs, indicating a good linear response to BSA in the range from 6 to 50mgL(-1). The results from this study provide an electrochemical co-assembly method for the development of non-redox protein biosensors. PMID:22824544

  8. UB CCD PHOTOMETRY OF THE OLD, METAL-RICH, OPEN CLUSTERS NGC 6791, NGC 6819, AND NGC 7142

    SciTech Connect

    Carraro, G.; Buzzoni, A.; Bertone, E.; Buson, L. E-mail: alberto.buzzoni@oabo.inaf.it E-mail: lucio.buson@oapd.inaf.it

    2013-11-01

    We report on a UV-oriented imaging survey in the fields of the old, metal-rich open clusters NGC 6791, NGC 6819, and NGC 7142. With their super-solar metallicity and ages ∼> 3-8 Gyr, these three clusters represent both very near and ideal stellar aggregates to match the distinctive properties of the evolved stellar populations, as in elliptical galaxies and bulges of spirals. Following a first discussion of NGC 6791 observations in an accompanying paper, here we complete our analysis, also presenting for NGC 6819 and NGC 7142 the first-ever U CCD photometry. The color-magnitude diagram of the three clusters is analyzed in detail, with special emphasis on the hot stellar component. We report, in this regard, one new extreme horizontal-branch star candidate in NGC 6791. For NGC 6819 and 7142, the stellar luminosity function clearly points to a looser radial distribution of faint lower main sequence stars, either as a consequence of cluster dynamical interaction with the Galaxy or as an effect of an increasing fraction of binary stars toward the cluster core, as also observed in NGC 6791. Compared to a reference theoretical model for the Galaxy disk, the analysis of the stellar field along the line of sight of each cluster indicates that a more centrally concentrated thick disk, on a scale length shorter than ∼2.8 kpc, might better reconcile the lower observed fraction of bright field stars and their white-dwarf progeny.

  9. UB CCD Photometry of the Old, Metal-rich, Open Clusters NGC 6791, NGC 6819, and NGC 7142

    NASA Astrophysics Data System (ADS)

    Carraro, G.; Buzzoni, A.; Bertone, E.; Buson, L.

    2013-11-01

    We report on a UV-oriented imaging survey in the fields of the old, metal-rich open clusters NGC 6791, NGC 6819, and NGC 7142. With their super-solar metallicity and ages >~ 3-8 Gyr, these three clusters represent both very near and ideal stellar aggregates to match the distinctive properties of the evolved stellar populations, as in elliptical galaxies and bulges of spirals. Following a first discussion of NGC 6791 observations in an accompanying paper, here we complete our analysis, also presenting for NGC 6819 and NGC 7142 the first-ever U CCD photometry. The color-magnitude diagram of the three clusters is analyzed in detail, with special emphasis on the hot stellar component. We report, in this regard, one new extreme horizontal-branch star candidate in NGC 6791. For NGC 6819 and 7142, the stellar luminosity function clearly points to a looser radial distribution of faint lower main sequence stars, either as a consequence of cluster dynamical interaction with the Galaxy or as an effect of an increasing fraction of binary stars toward the cluster core, as also observed in NGC 6791. Compared to a reference theoretical model for the Galaxy disk, the analysis of the stellar field along the line of sight of each cluster indicates that a more centrally concentrated thick disk, on a scale length shorter than ~2.8 kpc, might better reconcile the lower observed fraction of bright field stars and their white-dwarf progeny.

  10. NEW INSIGHT INTO THE SOLAR SYSTEM’S TRANSITION DISK PHASE PROVIDED BY THE METAL-RICH CARBONACEOUS CHONDRITE ISHEYEVO

    SciTech Connect

    Morris, Melissa A.; Garvie, Laurence A. J.; Knauth, L. Paul

    2015-03-10

    Many aspects of planet formation are controlled by the amount of gas remaining in the natal protoplanetary disks (PPDs). Infrared observations show that PPDs undergo a transition stage at several megayears, during which gas densities are reduced. Our Solar System would have experienced such a stage. However, there is currently no data that provides insight into this crucial time in our PPD’s evolution. We show that the Isheyevo meteorite contains the first definitive evidence for a transition disk stage in our Solar System. Isheyevo belongs to a class of metal-rich meteorites whose components have been dated at almost 5 Myr after formation of Ca, Al-rich inclusions, and exhibits unique sedimentary layers that imply formation through gentle sedimentation. We show that such layering can occur via the gentle sweep-up of material found in the impact plume resulting from the collision of two planetesimals. Such sweep-up requires gas densities consistent with observed transition disks (10{sup −12}–10{sup −11} g cm{sup −3}). As such, Isheyevo presents the first evidence of our own transition disk and provides new constraints on the evolution of our solar nebula.

  11. Mechanisms of iron photoreduction in a metal-rich, acidic stream (St. Kevin Gulch, Colorado, U.S.A.)

    USGS Publications Warehouse

    Kimball, B.A.; McKnight, Diane M.; Wetherbee, G.A.; Harnish, R.A.

    1992-01-01

    Iron photoreduction in metal-rich, acidic streams affected by mine drainage accounts for some of the variability in metal chemistry of such streams, producing diel variations in Fe(II). Differentiation of the mechanisms of the Fe photoreduction reaction by a series of in-stream experiments at St. Kevin Gulch, Colorado, indicates that a homogeneous, solution-phase reaction can occur in the absence of suspended particulate Fe and bacteria, and the rate of reaction is increased by the presence of Fe colloids in the stream water. In-stream Fe photoreduction is limited during the diel cycle by the available Fe(III) in the water column and streambed. The quantum yield of Fe(II) was reproducible in diel measurements: the quantum yield, in mol E-1 (from 300 to 400 nm) was 1.4 ?? 10-3 in 1986, 0.8 ?? 10-3 in 1988 and 1.2 ?? 10-3 in 1989, at the same location and under similar streamflow and stream-chemistry conditions. In a photolysis control experiment, there was no detectable production of Fe(II) above background concentrations in stream-water samples that were experimentally excluded from sunlight. ?? 1992.

  12. DISCOVERY OF A LOW-MASS COMPANION TO A METAL-RICH F STAR WITH THE MARVELS PILOT PROJECT

    SciTech Connect

    Fleming, Scott W.; Ge Jian; Mahadevan, Suvrath; Lee, Brian; Cuong Nguyen, Duy; Morehead, Robert C.; Wan Xiaoke; Zhao Bo; Liu Jian; Guo Pengcheng; Kane, Stephen R.; Eastman, Jason D.; Siverd, Robert J.; Scott Gaudi, B.; Niedzielski, Andrzej; Sivarani, Thirupathi; Stassun, Keivan G.; Gary, Bruce; Wolszczan, Alex; Barnes, Rory

    2010-08-01

    We report the discovery of a low-mass companion orbiting the metal-rich, main sequence F star TYC 2949-00557-1 during the Multi-object APO Radial Velocity Exoplanet Large-area Survey (MARVELS) pilot project. The host star has an effective temperature T{sub eff} = 6135 {+-} 40 K, logg = 4.4 {+-} 0.1, and [Fe/H] = 0.32 {+-} 0.01, indicating a mass of M = 1.25 {+-} 0.09 M{sub sun} and R = 1.15 {+-} 0.15 R{sub sun}. The companion has an orbital period of 5.69449 {+-} 0.00023 days and straddles the hydrogen burning limit with a minimum mass of 64 M{sub J} , and thus may be an example of the rare class of brown dwarfs orbiting at distances comparable to those of 'Hot Jupiters'. We present relative photometry that demonstrates that the host star is photometrically stable at the few millimagnitude level on time scales of hours to years, and rules out transits for a companion of radius {approx}>0.8 R{sub J} at the 95% confidence level. Tidal analysis of the system suggests that the star and companion are likely in a double synchronous state where both rotational and orbital synchronization have been achieved. This is the first low-mass companion detected with a multi-object, dispersed, fixed-delay interferometer.

  13. Alignment validation

    SciTech Connect

    ALICE; ATLAS; CMS; LHCb; Golling, Tobias

    2008-09-06

    The four experiments, ALICE, ATLAS, CMS and LHCb are currently under constructionat CERN. They will study the products of proton-proton collisions at the Large Hadron Collider. All experiments are equipped with sophisticated tracking systems, unprecedented in size and complexity. Full exploitation of both the inner detector andthe muon system requires an accurate alignment of all detector elements. Alignmentinformation is deduced from dedicated hardware alignment systems and the reconstruction of charged particles. However, the system is degenerate which means the data is insufficient to constrain all alignment degrees of freedom, so the techniques are prone to converging on wrong geometries. This deficiency necessitates validation and monitoring of the alignment. An exhaustive discussion of means to validate is subject to this document, including examples and plans from all four LHC experiments, as well as other high energy experiments.

  14. The Hubble Space Telescope quasar absorption line key project. 6: Properties of the metal-rich systems

    NASA Technical Reports Server (NTRS)

    Bergeron, Jacqueline; Petitjean, Patrick; Sargent, W. L. W.; Bahcall, John N.; Boksenberg, Alec; Hartig, George F.; Jannuzi, Buell T.; Kirhakos, Sofia; Savage, Blair D.; Schneider, Donald P.

    1994-01-01

    We present an analysis of the properties of a sample of 18 metal-rich, low-redshift z(sub abs) much less than z(sub em) absorbers seen in low- and medium-resolution spectra obtained for the Quasar Absorption Line Key Project with the Hubble Space Telescope Faint Object Spectrograph (HST/FOS). For most of the C IV and Lyman-limit systems, observations in the optical wavelength range of the expected associated Mg II absorption are available. As at high redshift (z approximately 2), there are two subclasses of absorbers which are characterized by the presence or absence of MG II absorption. However, some low-redshift Mg II and Fe absorptions originate from regions optically thin to UV ionizing photons and thus, at low redshift, the low-ionization systems do not always trace high opacities, as is the case at high redshift. This implies that the mean ionization state of metal-rich, optically thin absorbing clouds falls with decreasing redshift, which is consistent with the hypothesis that the gas is photoionized by the metagalactic UV background radiation field. Two main constraints are derived from the analysis of the Lyman-limit sample, assuming photoionization models are valid. First, a low opacity to ionizing photons (tau(sub LL) approximately less than 1), as observed for several Mg II-Fe II systems at z approximately 0.5, sets limits on the ionization level of hydrogen, thus on the total hydrogen column density and the heavy element abundances, (Z/H) approximately -0.5 to -0.3. Second, the dimensions of individual Mg II clouds are smaller than at high redshift by a factor 3-10. At z approximately greater than 0.6, the O VI absorption doublet is detected in four of the five z(sub abs) much less than z(sub em) systems for which the O VI wavelength range has been observed, whereas the associated N V doublet is detected in only two cases. This suggests that the presence of a high-ionization O VI phase is a general property of z approximately 0.6-1 absorption systems

  15. Long-Term Effects of Metal-Rich Sewage Sludge Application on Soil Populations of Bradyrhizobium japonicum.

    PubMed

    Kinkle, B K; Angle, J S; Keyser, H H

    1987-02-01

    The application of sewage sludge to land may increase the concentration of heavy metals in soil. Of considerable concern is the effect of heavy metals on soil microorganisms, especially those involved in the biocycling of elements important to soil productivity. Bradyrhizobium japonicum is a soil bacterium involved in symbiotic nitrogen fixation with Glycine max, the common soybean. To examine the effect of metal-rich sludge application on B. japonicum, the MICs for Pb, Cu, Al, Fe, Ni, Zn, Cd, and Hg were determined in minimal media by using laboratory reference strains representing 11 common serogroups of B. japonicum. Marked differences were found among the B. japonicum strains for sensitivity to Cu, Cd, Zn, and Ni. Strain USDA 123 was most sensitive to these metals, whereas strain USDA 122 was most resistant. In field studies, a silt loam soil amended 11 years ago with 0, 56, or 112 Mg of digested sludge per ha was examined for total numbers of B. japonicum by using the most probable number method. Nodule isolates from soybean nodules grown on this soil were serologically typed, and their metal sensitivity was determined. The number of soybean rhizobia in the sludge-amended soils was found to increase with increasing rates of sludge. Soybean rhizobia strains from 11 serogroups were identified in the soils; however, no differences in serogroup distribution or proportion of resistant strains were found between the soils. Thus, the application of heavy metal-containing sewage sludge did not have a long-term detrimental effect on soil rhizobial numbers, nor did it result in a shift in nodule serogroup distribution.

  16. Composition and mineralogy of refractory-metal-rich assemblages from a Ca,Al-rich inclusion in the Allende meteorite

    SciTech Connect

    Bischoff, A. Institut fuer Mineralogie, Muenster ); Palme, H. )

    1987-10-01

    The authors have separated four refractory metal-rich samples (10 {mu}g to 190 {mu}g) from a single Ca,Al-inclusion of the Allende meteorite. Chemical analyses were performed by INAA. From the analyzed samples polished sections were prepared. Mineral phases from six large Fremdlinge and the surrounding inclusion were analyzed by EDS. Three of the four separated samples have variable absolute but similar relative abundances of refractory metals. The pattern is controlled by volatility. The most refractory metals W, Os, and Re are enriched relative to the less refractory metals Ir, Mo, Ru, and Pt. This pattern can be reproduced by condensation calculations. A metal alloy in equilibrium with a gas of solar composition at a temperature of 1672 K, a pressure of 10{sup {minus}3} atm, and an H{sub 2}O/H{sub 2}-ratio of 5 {times} 10{sup {minus}3} would have the same abundance pattern. All six Fremdlinge have similar texture and mineralogy. They are composed of Ni-rich metal containing 2-9% Ir, surrounded by a fine-grained intergrowth of V-magnetite and FeS. The Ni-Fe metal poikilitically encloses tiny Os-particles, domains of a W- and Mo-rich solid solution (Ca(W,Mo)O{sub 4}) and V-magnetite. Based on chemical and textural information obtained in this study the formation of these aggregates in four steps is suggested: (1) condensation of a refractory metal alloys (W, Os, Re, Ir, Mo, Ru); (2) oxidation of the refractory metal alloy, allowing formation of Ca(W,Mo)O{sub 4}; (3) condensation of Ni-rich metal and V-magnetite at high oxygen fugacity (relative to the f{sub O{sub 2}} in a solar gas); (4) reaction of the existing assemblage with S to form FeS at lower temperatures.

  17. Extension of Empirical Color Calibration and Test using Cool and Metal-Rich Stars in NGC 6791

    NASA Astrophysics Data System (ADS)

    An, Deokkeun; Terndrup, Donald M.; Pinsonneault, Marc H.; Lee, Jae-woo

    2015-08-01

    We extend our effort to calibrate stellar isochrones in the Johnson-Cousins (BVIC) and the Two Micron All Sky Survey (JHKs) filter systems based on observations of well-studied open clusters. Using cool main-sequence (MS) stars in Praesepe, we define empirical corrections to the Lejeune et al. color-effective temperature (Teff) relations down to Teff ~ 3600 K, complementing our previous work based on the Hyades and the Pleiades. We apply empirically corrected isochrones to existing optical and near-infrared photometry of cool (Teff ~ 5500 K) and metal-rich ([Fe/H]=+0.37) MS stars in NGC 6791, and find that color-excess and distance estimates from color-magnitude diagrams with different color indices converge on each other at the precisely known metallicity of the cluster. Along with a satisfactory agreement with eclipsing binary data in the cluster, we view the improved internal consistency as a validation of our calibrated isochrones at super-solar metallicities. For very cool stars (Teff < 4800 K), however, we find that BV colors of our models are systematically redder than the cluster photometry by ~0.02 mag. We use color-Teff transformations from the infrared flux method (IRFM) and alternative photometry to examine a potential color-scale error in the input cluster photometry. After excluding BV photometry of these cool MS stars, we derive E(B-V)=0.105±0.014, [M/H]=+0.42±0.07, (m-M)0 = 13.04±0.09, and the age of 9.5±0.3 Gyr for NGC 6791.

  18. Long-Term Effects of Metal-Rich Sewage Sludge Application on Soil Populations of Bradyrhizobium japonicum

    PubMed Central

    Kinkle, B. K.; Angle, J. S.; Keyser, H. H.

    1987-01-01

    The application of sewage sludge to land may increase the concentration of heavy metals in soil. Of considerable concern is the effect of heavy metals on soil microorganisms, especially those involved in the biocycling of elements important to soil productivity. Bradyrhizobium japonicum is a soil bacterium involved in symbiotic nitrogen fixation with Glycine max, the common soybean. To examine the effect of metal-rich sludge application on B. japonicum, the MICs for Pb, Cu, Al, Fe, Ni, Zn, Cd, and Hg were determined in minimal media by using laboratory reference strains representing 11 common serogroups of B. japonicum. Marked differences were found among the B. japonicum strains for sensitivity to Cu, Cd, Zn, and Ni. Strain USDA 123 was most sensitive to these metals, whereas strain USDA 122 was most resistant. In field studies, a silt loam soil amended 11 years ago with 0, 56, or 112 Mg of digested sludge per ha was examined for total numbers of B. japonicum by using the most probable number method. Nodule isolates from soybean nodules grown on this soil were serologically typed, and their metal sensitivity was determined. The number of soybean rhizobia in the sludge-amended soils was found to increase with increasing rates of sludge. Soybean rhizobia strains from 11 serogroups were identified in the soils; however, no differences in serogroup distribution or proportion of resistant strains were found between the soils. Thus, the application of heavy metal-containing sewage sludge did not have a long-term detrimental effect on soil rhizobial numbers, nor did it result in a shift in nodule serogroup distribution. PMID:16347281

  19. Mobilization and transport of metal-rich colloidal particles from mine tailings into soil under transient chemical and physical conditions.

    PubMed

    Lu, Cong; Wu, Yaoguo; Hu, Sihai; Raza, Muhammad Ali; Fu, Yilin

    2016-04-01

    Exposed mine tailing wastes with considerable heavy metals can release hazardous colloidal particles into soil under transient chemical and physical conditions. Two-layered packed columns with tailings above and soils below were established to investigate mobilization and transport of colloidal particles from metal-rich mine tailings into soil under transient infiltration ionic strength (IS: 100, 20, 2 mM) and flow rate (FR: 20.7, 41, and 62.3 mm h(-1)), with Cu and Pb as representatives of the heavy metals. Results show that the tailing particles within the colloidal size (below 2 μm) were released from the columns. A step-decrease in infiltration IS and FR enhanced, whereas a step-increase in the IS and FR restrained the release of tailing particles from the column. The effects of step-changing FR were unexpected due to the small size of the released tailing particles (220-342 nm, being not sensitive to hydrodynamic shear force), the diffusion-controlled particle release process and the relatively compact pore structure. The tailing particles present in the solution with tested IS were found negatively charged and more stable than soil particles, which provides favorable conditions for tailing particles to be transported over a long distance in the soil. The mobilization and transport of Cu and Pb from the tailings into soil were mediated by the tailing particles. Therefore, the inherent toxic tailing particles could be considerably introduced into soil under certain conditions (IS reduction or FR decrease), which may result in serious environmental pollution. PMID:26780043

  20. Biological low pH Mn(II) oxidation in a manganese deposit influenced by metal-rich groundwater

    USGS Publications Warehouse

    Bohu, Tsing; Akob, Denise M.; Abratis, Michael; Lazar, Cassandre S.; Küsel, Kirsten

    2016-01-01

    The mechanisms, key organisms, and geochemical significance of biological low-pH Mn(II) oxidation are largely unexplored. Here, we investigated the structure of indigenous Mn(II)-oxidizing microbial communities in a secondary subsurface Mn oxide deposit influenced by acidic (pH 4.8) metal-rich groundwater in a former uranium mining area. Microbial diversity was highest in the Mn deposit compared to the adjacent soil layers and included the majority of known Mn(II)-oxidizing bacteria (MOB) and two genera of known Mn(II)-oxidizing fungi (MOF). Electron X-ray microanalysis showed that romanechite [(Ba,H2O)2(Mn4+,Mn3+)5O10] was conspicuously enriched in the deposit. Canonical correspondence analysis revealed that certain fungal, bacterial, and archaeal groups were firmly associated with the autochthonous Mn oxides. Eight MOB within the Proteobacteria, Actinobacteria, and Bacteroidetes and one MOF strain belonging to Ascomycota were isolated at pH 5.5 or 7.2 from the acidic Mn deposit. Soil-groundwater microcosms demonstrated 2.5-fold-faster Mn(II) depletion in the Mn deposit than adjacent soil layers. No depletion was observed in the abiotic controls, suggesting that biological contribution is the main driver for Mn(II) oxidation at low pH. The composition and species specificity of the native low-pH Mn(II) oxidizers were highly adapted to in situ conditions, and these organisms may play a central role in the fundamental biogeochemical processes (e.g., metal natural attenuation) occurring in the acidic, oligotrophic, and metalliferous subsoil ecosystems.

  1. Superemission in vertically-aligned single-wall carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Khmelinskii, Igor; Makarov, Vladimir

    2016-09-01

    Presently we used two samples of vertically aligned single-wall carbon nanotubes (VA SWCNTs) with parallelepiped geometry, sized 0.02 cm × 0.2 cm × 1.0 cm and 0.2 cm × 0.2 cm × 1.0 cm. We report absorption and emission properties of the VA SWCNTs, including strong anisotropy in both their absorption and emission spectra. We found that the emission spectra extend from the middle-IR range to the near-IR range, with such extended spectra being reported for the first time. Pumping the VA SWCNTs in the direction normal to their axis, superemission (SE) was observed in the direction along their axis. The SE band maximum is located at 7206 ± 0.4 cm-1. The energy and the power density of the superemission were estimated, along with the diffraction-limited divergence. At the pumping energy of 3 mJ/pulse, the SE energy measured by the detector was 0.74 mJ/pulse, corresponding to the total SE energy of 1.48 mJ/pulse, with the energy density of 18.5 mJ cm-2/pulse and the SE power density of 1.2 × 105 W cm-2/pulse. We report that a bundle of VA SWCNTs is an emitter with a relatively small divergence, not exceeding 3.9 × 10-3 rad. We developed a theoretical approach to explain such absorption and emission spectra. The developed theory is based on the earlier proposed SSH theory, which we extended to include the exchange interactions between the closest SWCNT neighbors. The developed theoretical ideas were implemented in a homemade FORTRAN code. This code was successfully used to calculate and reproduce the experimental spectra and to determine the SWCNT species that originate the respective absorption bands, with acceptable agreement between theory and experiment.

  2. A noble and single source precursor for the synthesis of metal-rich sulphides embedded in an N-doped carbon framework for highly active OER electrocatalysts.

    PubMed

    Barman, Barun Kumar; Nanda, Karuna Kar

    2016-04-21

    Here, we demonstrate a green and environment-friendly pyrolysis route for the synthesis of metal-rich sulphide embedded in an N-doped carbon (NC) framework in the absence of sulphide ions (S(2-)). The metal-chelate complex (tris(ethylenediamine) metal(ii) sulfate) serves as a new and single source precursor for the synthesis of earth abundant and non-precious hybrid structures such as metal-rich sulphides Co9S8@NC and Ni3S2@NC when M(II) = Co(2+) and Ni(2+) and counter sulphate (SO4(2-)) ions are the source of S. Both the hybrids show superior OER activity as compared to commercial RuO2.

  3. Multiple Metal-rich Sub-populations in Galaxies: the Star Formation/Assembly History of Galaxies Probed by Globular Clusters

    NASA Astrophysics Data System (ADS)

    Kissler-Patig, Markus

    Extragalactic globular clusters are used since a decade to probe the star formation and assembly history of nearby galaxies. In the early 90's, Zepf & Ashman (1993, MNRAS 264, 611) showed that several galaxies host at least two sub-populations of globular clusters. This fact was reinforced by subsequent studies (e. g. Gebhardt & Kissler-Patig 1999, AJ 118, 1526; Kundu 1999, PhD thesis), and many following studies dealt with the interpretation of the two main sub-populations (e. g. Kissler-Patig 2000, Reviews in Modern Astronomy, Vol. 13, p. 13 for a recent review) and their implications for galaxy formation scenarios. The nature of the metal-poor sub-populations is slowly understood as being a very uniform population in the nearby universe and most probably having formed in small fragments at the very beginning of galaxy formation and assembly. The nature of the metal-rich sub-populations is still hotly debated. It remains unclear whether its origin it mostly due to major mergers, whether it formed in situ during a monolithic bulge collapse, or whether it was accreted or cannibalized. The key to the answer lies in a more detailed analysis of the metal-rich sub-population. Is it itself composed by several sub-components? And can these sub-components tell us which mechanism dominated? First studies of extragalactic globular clusters in the optical and near-infrared show that the metal-rich sub-population might indeed be composed of several components. If confirmed, it would point to a significant contribution of hierarchical-like processes (accretion or mergers) to the metal-rich cluster and stellar component of galaxies.

  4. THE OPTICAL COLORS OF GIANT ELLIPTICAL GALAXIES AND THEIR METAL-RICH GLOBULAR CLUSTERS INDICATE A BOTTOM-HEAVY INITIAL MASS FUNCTION

    SciTech Connect

    Goudfrooij, Paul; Diederik Kruijssen, J. M. E-mail: kruijssen@mpa-garching.mpg.de

    2013-01-10

    We report a systematic and statistically significant offset between the optical (g - z or B - I) colors of seven massive elliptical galaxies and the mean colors of their associated massive metal-rich globular clusters (GCs) in the sense that the parent galaxies are redder by {approx}0.12-0.20 mag at a given galactocentric distance. However, spectroscopic indices in the blue indicate that the luminosity-weighted ages and metallicities of such galaxies are equal to that of their averaged massive metal-rich GCs at a given galactocentric distance, to within small uncertainties. The observed color differences between the red GC systems and their parent galaxies cannot be explained by the presence of multiple stellar generations in massive metal-rich GCs, as the impact of the latter to the populations' integrated g - z or B - I colors is found to be negligible. However, we show that this paradox can be explained if the stellar initial mass function (IMF) in these massive elliptical galaxies was significantly steeper at subsolar masses than canonical IMFs derived from star counts in the solar neighborhood, with the GC colors having become bluer due to dynamical evolution, causing a significant flattening of the stellar MF of the average surviving GC.

  5. Observations of the Hot Horizontal Branch Stars in the Metal-Rich Bulge Globular Cluster NGC 6388

    NASA Technical Reports Server (NTRS)

    Moehler, S.; Sweigart, A. V.

    2006-01-01

    The metal-rich bulge globular cluster NGC 6388 shows a distinct blue horizontal-branch tail in its colour-magnitude diagram (Rich et al. 1997) and is thus a strong case of the well-known 2nd Parameter Problem. In addition, its horizontal branch (HB) shows an upward tilt toward bluer colours, which cannot be explained by canonical evolutionary models. Several non-canonical scenarios have been proposed to explain these puzzling observations. In order to test the predictions of these scenarios, we have obtained medium resolution spectra to determine the atmospheric parameters of a sample of the blue HB stars in NGC 6388.Using the medium resolution spectra, we determine effective temperatures, surface gravities and helium abundances by fitting the observed Balmer and helium lines with appropriate theoretical stellar spectra. As we know the distance to the cluster, we can verify our results by determining masses for the stars. During the data reduction we took special care to correctly subtract the background, which is dominated by the overlapping spectra of cool stars. The cool blue tail stars in our sample with T(sub eff) approximately 10000 K have lower than canonical surface gravities, suggesting that these stars are, on average, approximately equal to 0.4 mag brighter than canonical HB stars in agreement with the observed upward slope of the HB in NGC 6388. Moreover, the mean mass of these stars agrees well with theoretical predictions. In contrast, the hot blue tail stars in our sample with T(sub eff) greater than or equal to 12000 K show significantly lower surface gravities than predicted by any scenario, which can reproduce the photometric observations. Their masses are also too low by about a factor of 2 compared to theoretical predictions. The physical parameters of the blue HB stars at about 10,000 K support the helium pollution scenario. The low gravities and masses of the hot blue tail stars, however, are probably caused by problems with the data reduction

  6. Accurate p-mode measurements of the G0V metal-rich CoRoT target HD 52265

    NASA Astrophysics Data System (ADS)

    Ballot, J.; Gizon, L.; Samadi, R.; Vauclair, G.; Benomar, O.; Bruntt, H.; Mosser, B.; Stahn, T.; Verner, G. A.; Campante, T. L.; García, R. A.; Mathur, S.; Salabert, D.; Gaulme, P.; Régulo, C.; Roxburgh, I. W.; Appourchaux, T.; Baudin, F.; Catala, C.; Chaplin, W. J.; Deheuvels, S.; Michel, E.; Bazot, M.; Creevey, O.; Dolez, N.; Elsworth, Y.; Sato, K. H.; Vauclair, S.; Auvergne, M.; Baglin, A.

    2011-06-01

    Context. The star HD 52265 is a G0V metal-rich exoplanet-host star observed in the seismology field of the CoRoT space telescope from November 2008 to March 2009. The satellite collected 117 days of high-precision photometric data on this star, showing that it presents solar-like oscillations. HD 52265 was also observed in spectroscopy with the Narval spectrograph at the same epoch. Aims: We characterise HD 52265 using both spectroscopic and seismic data. Methods: The fundamental stellar parameters of HD 52265 were derived with the semi-automatic software VWA, and the projected rotational velocity was estimated by fitting synthetic profiles to isolated lines in the observed spectrum. The parameters of the observed p modes were determined with a maximum-likelihood estimation. We performed a global fit of the oscillation spectrum, over about ten radial orders, for degrees l = 0 to 2. We also derived the properties of the granulation, and analysed a signature of the rotation induced by the photospheric magnetic activity. Results: Precise determinations of fundamental parameters have been obtained: Teff = 6100 ± 60 K, log g = 4.35 ± 0.09, [M/H] = 0.19 ± 0.05, as well as vsini=3.6+0.3-1.0kms. We have measured a mean rotation period Prot = 12.3 ± 0.15 days, and find a signature of differential rotation. The frequencies of 31 modes are reported in the range 1500-2550 μHz. The large separation exhibits a clear modulation around the mean value Dnu=98.3 ± 0.1 μHz. Mode widths vary with frequency along an S-shape with a clear local maximum around 1800 μHz. We deduce lifetimes ranging between 0.5 and 3 days for these modes. Finally, we find a maximal bolometric amplitude of about 3.96 ± 0.24 ppm for radial modes. The CoRoT space mission, launched on December 27th 2006, has been developed and is operated by CNES, with the contribution of Austria, Belgium, Brazil, ESA (RSSD and Science Programme), Germany and Spain.

  7. A global analysis of Spitzer and new HARPS data confirms the loneliness and metal-richness of GJ 436 b

    NASA Astrophysics Data System (ADS)

    Lanotte, A. A.; Gillon, M.; Demory, B.-O.; Fortney, J. J.; Astudillo, N.; Bonfils, X.; Magain, P.; Delfosse, X.; Forveille, T.; Lovis, C.; Mayor, M.; Neves, V.; Pepe, F.; Queloz, D.; Santos, N.; Udry, S.

    2014-12-01

    Context. GJ 436b is one of the few transiting warm Neptunes for which a detailed characterisation of the atmosphere is possible, whereas its non-negligible orbital eccentricity calls for further investigation. Independent analyses of several individual datasets obtained with Spitzer have led to contradicting results attributed to the different techniques used to treat the instrumental effects. Aims: We aim at investigating these previous controversial results and developing our knowledge of the system based on the full Spitzer photometry dataset combined with new Doppler measurements obtained with the HARPS spectrograph. We also want to search for additional planets. Methods: We optimise aperture photometry techniques and the photometric deconvolution algorithm DECPHOT to improve the data reduction of the Spitzer photometry spanning wavelengths from 3-24 μm. Adding the high-precision HARPS radial velocity data, we undertake a Bayesian global analysis of the system considering both instrumental and stellar effects on the flux variation. Results: We present a refined radius estimate of RP = 4.10 ± 0.16 R⊕ , mass MP = 25.4 ± 2.1 M⊕, and eccentricity e = 0.162 ± 0.004 for GJ 436b. Our measured transit depths remain constant in time and wavelength, in disagreement with the results of previous studies. In addition, we find that the post-occultation flare-like structure at 3.6 μm that led to divergent results on the occultation depth measurement is spurious. We obtain occultation depths at 3.6, 5.8, and 8.0 μm that are shallower than in previous works, in particular at 3.6 μm. However, these depths still appear consistent with a metal-rich atmosphere depleted in methane and enhanced in CO/CO2, although perhaps less than previously thought. We could not detect a significant orbital modulation in the 8 μm phase curve. We find no evidence of a potential planetary companion, stellar activity, or a stellar spin-orbit misalignment. Conclusions: Recent theoretical

  8. The subgiant branch of ω Centauri seen through high-resolution spectroscopy. II. The most metal-rich population

    NASA Astrophysics Data System (ADS)

    Pancino, E.; Mucciarelli, A.; Bonifacio, P.; Monaco, L.; Sbordone, L.

    2011-10-01

    We analyze spectra of 18 stars belonging to the faintest subgiant branch in ω Centauri (the SGB-a), obtained with GIRAFFE@VLT at a resolution of R ≃ 17 000 and a S/N ratio between 25 and 50. We measure abundances of Al, Ba, Ca, Fe, Ni, Si, and Ti and we find that these stars have ⟨[Fe/H]⟩ = -0.73 ± 0.14 dex, similarly to the corresponding red giant branch population (the RGB-a). We also measure ⟨[α/Fe]⟩ = + 0.40 ± 0.16 dex, and ⟨[Ba/Fe]⟩ = + 0.87 ± 0.23 dex, in general agreement with past studies. It is very interesting to note that we found a uniform Al abundance, ⟨[Al/Fe]⟩ = + 0.32 ± 0.14 dex, for all the 18 SGB-a stars analysed here, thus supporting past evidence that the usual (anti-)correlations are not present in this population, and suggesting a non globular cluster-like origin of this particular population. In the dwarf galaxy hypothesis for the formation of ω Cen, this population might be the best candidate for the field population of its putative parent galaxy, although some of its properties appear contradictory. It has also been suggested that the most metal-rich population in ω Cen is significantly enriched in helium. If this is true, the traditional abundance analysis techniques, based on model atmospheres with normal helium content, might lead to errors. We have computed helium enhanced atmospheres for three stars in our sample and verified that the abundance errors due to the use of non-enhanced atmospheres are negligible. Additional, indirect support to the enhanced helium content of the SGB-a population comes from our Li upper limits. Based on observations with the ESO GIRAFFE@VLT, under programme 079.D-0021(A). Also based on literature data obtained with WFI@VLT (programmes 62.L-0345 and 63.L-0439) and FORS@VLT (programme 68.D-0332). The following online databases were also extensively employed: NIST, VALD, Kurucz.Full Table 2 is only available at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via

  9. Alignment fixture

    DOEpatents

    Bell, Grover C.; Gibson, O. Theodore

    1980-01-01

    A part alignment fixture is provided which may be used for precise variable lateral and tilt alignment relative to the fixture base of various shaped parts. The fixture may be used as a part holder for machining or inspection of parts or alignment of parts during assembly and the like. The fixture includes a precisely machined diameter disc-shaped hub adapted to receive the part to be aligned. The hub is nested in a guide plate which is adapted to carry two oppositely disposed pairs of positioning wedges so that the wedges may be reciprocatively positioned by means of respective micrometer screws. The sloping faces of the wedges contact the hub at respective quadrants of the hub periphery. The lateral position of the hub relative to the guide plate is adjusted by positioning the wedges with the associated micrometer screws. The tilt of the part is adjusted relative to a base plate, to which the guide plate is pivotally connected by means of a holding plate. Two pairs of oppositely disposed wedges are mounted for reciprocative lateral positioning by means of separate micrometer screws between flanges of the guide plate and the base plate. Once the wedges are positioned to achieve the proper tilt of the part or hub on which the part is mounted relative to the base plate, the fixture may be bolted to a machining, inspection, or assembly device.

  10. Curriculum Alignment.

    ERIC Educational Resources Information Center

    Crowell, Ronald; Tissot, Paula

    Curriculum alignment (CA) refers to the congruence of all the elements of a school's curriculum: curriculum goals; instructional program--what is taught and the materials used; and tests used to judge outcomes. CA can be a very powerful can be a very powerful factor in improving schools. Although further research is needed on CA, there is…

  11. ALIGNING JIG

    DOEpatents

    Culver, J.S.; Tunnell, W.C.

    1958-08-01

    A jig or device is described for setting or aligning an opening in one member relative to another member or structure, with a predetermined offset, or it may be used for measuring the amount of offset with which the parts have previously been sct. This jig comprises two blocks rabbeted to each other, with means for securing thc upper block to the lower block. The upper block has fingers for contacting one of the members to be a1igmed, the lower block is designed to ride in grooves within the reference member, and calibration marks are provided to determine the amount of offset. This jig is specially designed to align the collimating slits of a mass spectrometer.

  12. Image alignment

    SciTech Connect

    Dowell, Larry Jonathan

    2014-04-22

    Disclosed is a method and device for aligning at least two digital images. An embodiment may use frequency-domain transforms of small tiles created from each image to identify substantially similar, "distinguishing" features within each of the images, and then align the images together based on the location of the distinguishing features. To accomplish this, an embodiment may create equal sized tile sub-images for each image. A "key" for each tile may be created by performing a frequency-domain transform calculation on each tile. A information-distance difference between each possible pair of tiles on each image may be calculated to identify distinguishing features. From analysis of the information-distance differences of the pairs of tiles, a subset of tiles with high discrimination metrics in relation to other tiles may be located for each image. The subset of distinguishing tiles for each image may then be compared to locate tiles with substantially similar keys and/or information-distance metrics to other tiles of other images. Once similar tiles are located for each image, the images may be aligned in relation to the identified similar tiles.

  13. Geologic and mineralogic controls on acid and metal-rich rock drainage in an alpine watershed, Handcart Gulch, Colorado

    USGS Publications Warehouse

    Bove, Dana J.; Caine, Jonathan S.; Lowers, Heather

    2012-01-01

    source of trace metals in other areas with acid rock drainage. Thus, elevated base-metal concentrations in the trunk stream and discrete springs in the study area, as determined in previous studies, are likely derived from discrete metal-rich sources, rather than the abundant pyrite veins or disseminations. Pyrite is oxidized in nearly all outcrops examined. Drill core data show that zones of pyrite oxidation range in depth from 100 meters below the surface at higher elevations to just a few meters depth at the lowest elevations in the study area. However, discrete pyrite oxidation zones are present in drill core to depths of several hundred meters below the pervasive near-surface oxidation zones. These deeper discrete oxidation zones, which are present where fresh pyrite predominates, are spatially associated with fractures, small faults, and breccias. Quartz-sericite-pyrite-altered rocks containing unoxidized pyrite likely have the highest acid-generating capacity of all alteration assemblages in the study area. Hydrothermal alteration has left these rocks base-cation leached and thus acid-neutralizing potential is negligible. In contrast, propylitic-altered felsic rocks commonly contain trace to minor calcite and abundant chlorite, which provide some amount of acid-neutralization despite the presence of a few percent pyrite.

  14. Comparing the removal of perchlorate when using single-walled carbon nanotubes (SWCNTs) or granular activated carbon: adsorption kinetics and thermodynamics.

    PubMed

    Lou, Jie C; Hsu, Yung S; Hsu, Kai L; Chou, Ming S; Han, Jia Y

    2014-01-01

    This study aims to remove perchlorate using single-walled carbon nanotubes (SWCNTs) or granular activated carbon (GAC). Dynamic and equilibrium adsorption experiments were performed to evaluate the thermodynamic behavior of perchlorate on SWCNTs and GAC. Key parameters affecting the adsorption, such as pH, ionic strength, and temperature were studied. The experimental results showed that the dynamic adsorption experiment achieved equilibrium in approximately eight hours. The adsorption capacity increased as the concentration of perchlorate increased or as the ionic strength decreased. The selected adsorption models were the modified Freundlich, the pseudo-1st-order, and the pseudo-2nd-order equations. The results showed that the modified Freundlich equation best described the kinetic adsorption processes. The maximal adsorption capacities of GAC and SWCNTs were 33.87-28.21 mg/g and 13.64 - 10.03 mg/g, respectively, at a constant temperature between 5°C and 45°C. The thermodynamic parameters, such as the equilibrium constant (K0 ), the standard free energy changes (ΔG°), the standard enthalpy change (ΔH°) and the standard entropy change (ΔS°), were obtained. The results of the isothermal equilibrium adsorption experiment showed that low pH levels, low ionic strength, and low-temperature conditions facilitated the perchlorate adsorption, indicating that GAC and SWCNTs are potential absorbents for water treatment. PMID:24410681

  15. Comparing the removal of perchlorate when using single-walled carbon nanotubes (SWCNTs) or granular activated carbon: adsorption kinetics and thermodynamics.

    PubMed

    Lou, Jie C; Hsu, Yung S; Hsu, Kai L; Chou, Ming S; Han, Jia Y

    2014-01-01

    This study aims to remove perchlorate using single-walled carbon nanotubes (SWCNTs) or granular activated carbon (GAC). Dynamic and equilibrium adsorption experiments were performed to evaluate the thermodynamic behavior of perchlorate on SWCNTs and GAC. Key parameters affecting the adsorption, such as pH, ionic strength, and temperature were studied. The experimental results showed that the dynamic adsorption experiment achieved equilibrium in approximately eight hours. The adsorption capacity increased as the concentration of perchlorate increased or as the ionic strength decreased. The selected adsorption models were the modified Freundlich, the pseudo-1st-order, and the pseudo-2nd-order equations. The results showed that the modified Freundlich equation best described the kinetic adsorption processes. The maximal adsorption capacities of GAC and SWCNTs were 33.87-28.21 mg/g and 13.64 - 10.03 mg/g, respectively, at a constant temperature between 5°C and 45°C. The thermodynamic parameters, such as the equilibrium constant (K0 ), the standard free energy changes (ΔG°), the standard enthalpy change (ΔH°) and the standard entropy change (ΔS°), were obtained. The results of the isothermal equilibrium adsorption experiment showed that low pH levels, low ionic strength, and low-temperature conditions facilitated the perchlorate adsorption, indicating that GAC and SWCNTs are potential absorbents for water treatment.

  16. THE OLD, SUPER-METAL-RICH OPEN CLUSTER, NGC 6791—ELEMENTAL ABUNDANCES IN TURN-OFF STARS FROM KECK/HIRES SPECTRA

    SciTech Connect

    Merchant Boesgaard, Ann; Lum, Michael G.; Deliyannis, Constantine P. E-mail: mikelum@ifa.hawaii.edu

    2015-02-01

    The study of star clusters has advanced our understanding of stellar evolution, Galactic chemical evolution, and nucleosynthesis. Here we investigate the composition of turn-off stars in the intriguing open cluster, NGC 6791, which is old, but super-metal-rich with high-resolution (R = 46,000) Keck/HIRES spectra. We find [Fe/H] = +0.30 ± 0.02 from measurements of some 40 unblended, unsaturated lines of both Fe I and Fe II in eight turn-off stars. Our O abundances come from the O I triplet near 7774 Å and we perform a differential analysis relative to the Sun from our Lunar spectrum also obtained with Keck/HIRES. The O results are corrected for small nLTE effects. We find consistent ratios of [O/Fe]{sub n} with a mean of –0.06 ± 0.02. This is low with respect to field stars that are also both old and metal-rich and continue the trend of decreasing [O/Fe] with increasing [Fe/H]. The small range in our oxygen abundances is consistent with a single population of stars. Our results for the alpha elements [Mg/Fe], [Si/Fe], [Ca/Fe], and [Ti/Fe] are near solar and compare well with those of the old, metal-rich field stars. The two Fe-peak elements, Cr and Ni, are consistent with Fe. These turn-off-star abundances provide benchmark abundances to investigate whether there are any observable abundance differences with the giants that might arise from nuclear-burning and dredge-up processes. Determinations of upper limits were found for Li by spectrum synthesis and are consistent with the upper limits in similar stars in the relatively old, super-metal-rich cluster NGC 6253. Our results support the prediction from standard theory that higher-metallicity stars deplete more Li. Probably no stars in NGC 6791 have retained their initial Li.

  17. The Old, Super-metal-rich Open Cluster, NGC 6791—Elemental Abundances in Turn-off Stars from Keck/HIRES Spectra

    NASA Astrophysics Data System (ADS)

    Boesgaard, Ann Merchant; Lum, Michael G.; Deliyannis, Constantine P.

    2015-02-01

    The study of star clusters has advanced our understanding of stellar evolution, Galactic chemical evolution, and nucleosynthesis. Here we investigate the composition of turn-off stars in the intriguing open cluster, NGC 6791, which is old, but super-metal-rich with high-resolution (R = 46,000) Keck/HIRES spectra. We find [Fe/H] = +0.30 ± 0.02 from measurements of some 40 unblended, unsaturated lines of both Fe I and Fe II in eight turn-off stars. Our O abundances come from the O I triplet near 7774 Å and we perform a differential analysis relative to the Sun from our Lunar spectrum also obtained with Keck/HIRES. The O results are corrected for small nLTE effects. We find consistent ratios of [O/Fe]n with a mean of -0.06 ± 0.02. This is low with respect to field stars that are also both old and metal-rich and continue the trend of decreasing [O/Fe] with increasing [Fe/H]. The small range in our oxygen abundances is consistent with a single population of stars. Our results for the alpha elements [Mg/Fe], [Si/Fe], [Ca/Fe], and [Ti/Fe] are near solar and compare well with those of the old, metal-rich field stars. The two Fe-peak elements, Cr and Ni, are consistent with Fe. These turn-off-star abundances provide benchmark abundances to investigate whether there are any observable abundance differences with the giants that might arise from nuclear-burning and dredge-up processes. Determinations of upper limits were found for Li by spectrum synthesis and are consistent with the upper limits in similar stars in the relatively old, super-metal-rich cluster NGC 6253. Our results support the prediction from standard theory that higher-metallicity stars deplete more Li. Probably no stars in NGC 6791 have retained their initial Li.

  18. ASYMMETRY IN THE OBSERVED METAL-RICH EJECTA OF THE GALACTIC TYPE IA SUPERNOVA REMNANT G299.2–2.9

    SciTech Connect

    Post, Seth; Park, Sangwook; Badenes, Carles; Burrows, David N.; Hughes, John P.; Lee, Jae-Joon; Mori, Koji; Slane, Patrick O. E-mail: badenes@pitt.edu E-mail: jph@physics.rutgers.edu E-mail: slane@cfa.harvard.edu

    2014-09-01

    We have performed a deep Chandra observation of the Galactic Type Ia supernova remnant G299.2–2.9. Here we report the initial results from our imaging and spectral analysis. The observed abundance ratios of the central ejecta are in good agreement with those predicted by delayed-detonation Type Ia supernovae models. We reveal inhomogeneous spatial and spectral structures of metal-rich ejecta in G299.2–2.9. The Fe/Si abundance ratio in the northern part of the central ejecta region is higher than that in the southern part. A significant continuous elongation of ejecta material extends out to the western outermost boundary of the remnant. In this western elongation, both the Si and Fe are enriched with a similar abundance ratio to that in the southern part of the central ejecta region. These structured distributions of metal-rich ejecta material suggest that this Type Ia supernova might have undergone a significantly asymmetric explosion and/or has been expanding into a structured medium.

  19. Characterizing the Effect of Salt and Surfactant Concentration on the Counterion Atmosphere around Surfactant Stabilized SWCNTs Using Analytical Ultracentrifugation.

    PubMed

    Lam, Stephanie; Zheng, Ming; Fagan, Jeffrey A

    2016-04-26

    Accurate characterization of dispersed-phase nanoparticle properties such as density, size, solvation, and charge is necessary for their utilization in applications such as medicine, energy, and materials. Herein, analytical ultracentrifugation (AUC) is used to quantify bile salt surfactant adsorption on length sorted (7,6) single-wall carbon nanotubes (SWCNTs) as a function of bulk surfactant concentration and in the presence of varying quantities of a monovalent salt-sodium chloride. These measurements provide high precision adsorbed surfactant density values in the literature for only the second SWCNT structure to date and report the quantity of adsorbed surfactant across a broad range of bulk surfactant concentrations utilized in SWCNT dispersion processing. Second, the measurements presented herein unambiguously demonstrate, via AUC, a direct relation between the size of the counterion cloud around a surfactant-stabilized SWCNT and solution ionic strength. The results show that changes in the size of the counterion cloud around surfactant-stabilized SWCNT are attributable to electrostatic phenomenon and not to changes in the quantity of adsorbed surfactant with salt addition. These results provide important reference values for projecting SWCNT dispersion behavior as a function of solution conditions and extend the range of nanoparticle properties measurable via AUC. PMID:27031248

  20. Global alignment: Finding rearrangements during alignment

    SciTech Connect

    Brudno, Michael; Malde, Sanket; Poliakov, Alexander; Do, Chuong B.; Couronne, Olivier; Dubchak, Inna; Batzoglou, Serafim

    2003-01-06

    Motivation: To compare entire genomes from different species, biologists increasingly need alignment methods that are efficient enough to handle long sequences, and accurate enough to correctly align the conserved biological features between distant species. The two main classes of pairwise alignments are global alignment, where one string is transformed into the other, and local alignment, where all locations of similarity between the two strings are returned. Global alignments are less prone to demonstrating false homology as each letter of one sequence is constrained to being aligned to only one letter of the other. Local alignments, on the other hand, can cope with rearrangements between non-syntenic, orthologous sequences by identifying similar regions in sequences; this, however, comes at the expense of a higher false positive rate due to the inability of local aligners to take into account overall conservation maps.

  1. Hydrogen Abundances in Metal Grains from the Hammadah Al Hamra (HaH) 237 Metal-rich Chondrite: A Test of the Nebular-Formation Theory

    NASA Technical Reports Server (NTRS)

    Lauretta, D. S.; Guan, Y.; Leshin, L. A.

    2005-01-01

    The Bencubbin-like (CB) chondrites are metal-rich, primitive meteorites [1,2]. Some of these chondrites (HaH 237, QUE 94411) contain compositionally zoned metal grains with near-chondritic bulk compositions. Thermodynamic modeling of the zoning patterns in these grains suggests that they were formed by condensation in a region of the solar nebula with enhanced dust/gas ratios and a total pressure of 10(exp -4) bars at temperatures between 1400 - 1500 K [3]. If these predictions are correct than the metal grains would have been exposed to abundant H2 gas, which comprises the bulk of nebular systems. Since Fe-based alloys can absorb significant quantities of H, metal grains formed in the solar nebula should contain measurable abundances of H.

  2. An approach to determination of phenolic compounds in seawater using SPME-GC-MS based on SWCNTs coating

    NASA Astrophysics Data System (ADS)

    Zhu, Jia; Wang, Ying; Zeng, Lin

    2016-08-01

    Phenolic compounds have become one kind of the important pollutants of the marine environment. Single-walled Carbon nanotubes, as one-dimensional nano materials, have light weight and perfect hexagonal structure of connections, with many unusual mechanical, chemical and electrical properties. In recent years, with the research of carbon nanotubes and other nano materials, the application prospect is also constantly discussed. In this paper, homemade single-walled carbon nanotubes (SWCNTs) coating was used for establishing an analytical approach to the determination of five kinds of phenolic compounds in seawater using SPME-GC-MS. Optimal conditions: After saturation was conducted with NaCl, and pH was adjusted to 2.0 with H2SO4, the extract was immersed in a water bath at 40°C for GC-MS determination through 40-min agitating extraction at 500 rmin-1 and 3-min desorption at 280°C. The liniearities ranged between 0.01-100 μg L-1, and the determination limits ranged between 1.5-10 ng L-1. The relative standard deviation (RSD, n = 5) was less than 6.5%. For the phenolic compounds obtained from the spiked recovery test for actual seawater samples, the rates of recovery were 87.5%-101.7%, and the RSDs were less than 8.8%, which met the requirements of determination. Due to its simplicity, high efficiency and low consumption, this approach is suitable for the analysis of trace amounts of phenolic compounds in marine waters.

  3. Interaction Dynamics in Inhibiting the Aggregation of Aβ Peptides by SWCNTs: A Combined Experimental and Coarse-Grained Molecular Dynamic Simulation Study.

    PubMed

    Lin, Dongdong; Qi, Ruxi; Li, Shujie; He, Ruoyu; Li, Pei; Wei, Guanghong; Yang, Xinju

    2016-09-21

    The aggregation of amyloid-β peptides (Aβ) is considered as the main possible cause of Alzheimer's disease (AD). How to suppress the formation of toxic Aβ aggregates has been an intensive concern over the past several decades. Increasing evidence shows that whether carbon nanomaterials can suppress or promote the aggregation depends on their physicochemical properties. However, their interaction dynamics remains elusive as amyloid fibrillation is a complex multistep process. In this paper, we utilized atomic force microscopy (AFM), electrostatic force microscopy (EFM), ThT/fluorescence spectroscopy, and cell viability measurements, combined with coarse-grained molecular dynamic (MD) simulations to study the dynamic interaction of full length Aβ with single-walled carbon nanotubes (SWCNT). At the single SWCNTs scale, it is found that the presence of SWCNTs would result in rapid and spontaneous adsorption of Aβ1-40 peptides on their surface and stacking into nonfibrillar aggregates with reduced toxicity, which plays an important role in inhibiting the formation of toxic oligomers and mature fibrils. Our results provide new clues for studying the interaction in amyloid/SWCNTs system as well as for seeking amyloidosis inhibitors with carbon nanomaterials. PMID:27441457

  4. Carbon and oxygen abundances in cool metal-rich exoplanet hosts: A case study of the C/O ratio of 55 Cancri

    SciTech Connect

    Teske, Johanna K.; Cunha, Katia; Schuler, Simon C.; Griffith, Caitlin A.; Smith, Verne V.

    2013-12-01

    The super-Earth exoplanet 55 Cnc e, the smallest member of a five-planet system, has recently been observed to transit its host star. The radius estimates from transit observations, coupled with spectroscopic determinations of mass, provide constraints on its interior composition. The composition of exoplanetary interiors and atmospheres are particularly sensitive to elemental C/O ratio, which to first order can be estimated from the host stars. Results from a recent spectroscopic study analyzing the 6300 Å [O I] line and two C I lines suggest that 55 Cnc has a carbon-rich composition (C/O = 1.12 ± 0.09). However, oxygen abundances derived using the 6300 Å [O I] line are highly sensitive to a Ni I blend, particularly in metal-rich stars such as 55 Cnc ([Fe/H] =0.34 ± 0.18). Here, we further investigate 55 Cnc's composition by deriving the carbon and oxygen abundances from these and additional C and O absorption features. We find that the measured C/O ratio depends on the oxygen lines used. The C/O ratio that we derive based on the 6300 Å [O I] line alone is consistent with the previous value. Yet, our investigation of additional abundance indicators results in a mean C/O ratio of 0.78 ± 0.08. The lower C/O ratio of 55 Cnc determined here may place this system at the sensitive boundary between protoplanetary disk compositions giving rise to planets with high (>0.8) versus low (<0.8) C/O ratios. This study illustrates the caution that must applied when determining planet host star C/O ratios, particularly in cool, metal-rich stars.

  5. THE DOMINANCE OF METAL-RICH STREAMS IN STELLAR HALOS: A COMPARISON BETWEEN SUBSTRUCTURE IN M31 AND {lambda}CDM MODELS

    SciTech Connect

    Gilbert, Karoline M.; Font, Andreea S.; Johnston, Kathryn V.; Guhathakurta, Puragra E-mail: andreea.font@durham.ac.uk E-mail: raja@ucolick.org

    2009-08-10

    Extensive photometric and spectroscopic surveys of the Andromeda galaxy (M31) have discovered tidal debris features throughout M31's stellar halo. We present stellar kinematics and metallicities in fields with identified substructure from our on-going SPLASH survey of M31 red giant branch stars with the DEIMOS spectrograph on the Keck II 10 m telescope. Radial velocity criteria are used to isolate members of the kinematically cold substructures. The substructures are shown to be metal-rich relative to the rest of the dynamically hot stellar population in the fields in which they are found. We calculate the mean metallicity and average surface brightness of the various kinematical components in each field, and show that, on average, higher surface brightness features tend to be more metal-rich than lower surface brightness features. Simulations of stellar halo formation via accretion in a cosmological context are used to illustrate that the observed trend can be explained as a natural consequence of the observed dwarf galaxy mass-metallicity relation. A significant spread in metallicity at a given surface brightness is seen in the data; we show that this is due to time effects, namely, the variation in the time since accretion of the tidal streams' progenitor onto the host halo. We show that in this theoretical framework a relationship between the alpha-enhancement and surface brightness of tidal streams is expected, which arises from the varying times of accretion of the progenitor satellites onto the host halo. Thus, measurements of the alpha-enrichment, metallicity, and surface brightness of tidal debris can be used to reconstruct the luminosity and time of accretion onto the host halo of the progenitors of tidal streams.

  6. Transcriptional effects of metal-rich acid drainage water from the abandoned Løkken Mine on Atlantic salmon (Salmo salar) smolt.

    PubMed

    Olsvik, Pål A; Ulvund, John B; Teien, Hans C; Urke, Henning A; Lie, Kai K; Kristensen, Torstein

    2016-01-01

    Runoff of metals represents one of the major environmental challenges related to historic and ongoing mining activity. In this study, transcriptomics (direct RNA sequencing [RNA-seq] and reverse-transcription quantitative polymerase chain reaction [RT-qPCR]) was used to predict toxicity of metal-rich acid mine drainage (AMD) water collected in the abandoned copper (Cu) mine called Løkken Mine on Atlantic salmon liver and kidney, the main target organs of Cu-induced toxicity in fish. Smolts were exposed to control and diluted AMD water, which contains a mixture of metals but is especially enriched with Cu, at 4 concentrations in freshwater (FW) for 96 h, and then were transferred to and kept in seawater (SW) for another 24 h. Significant accumulation of Cu was observed in the gills, but not liver and kidney tissues, after 96 h of exposure. Short-term exposure to metal-rich ADM (high exposure group) significantly upregulated 3201 transcripts and downregulated 3782 transcripts in liver. The strongest effect attributed to exposure was observed on the KEGG pathway "protein processing in endoplasmic reticulum," followed by "steroid biosynthesis." Gene ontology (GO) analysis suggested that exposure predominantly affected "protein folding," possibly by disrupting disulfide bonds as a result of endoplasmic-reticulum-generated stress, and "sterol biosynthetic processes." Transfer to uncontaminated SW for 24 h amended the transcription of several genes, suggesting a transient effect of treatment on some mechanisms. In conclusion, the data show that trace metals in AMD from abandoned pyrite mines might disturb molecular mechanisms linked to protein folding in Atlantic salmon smolt endoplasmic reticulum. PMID:27484142

  7. Corrosion of calcite crystals by metal-rich mud in caves: Study case in Crovassa Ricchi in Argento Cave (SW Sardinia, Italy)

    NASA Astrophysics Data System (ADS)

    Gázquez, Fernando; Calaforra, José-María; Forti, Paolo; De Waele, Jo; Sanna, Laura; Rull, Fernando; Sanz, Aurelio

    2013-09-01

    Unusual orange ochre crusts were recently discovered in Crovassa Ricchi in Argento Cave (San Giovanni Mine, SW Sardinia). These speleothems appear covering the cave walls on hydrothermal calcite spars as well as filling widened spaces between calcite crystals. Planar crusts display geometrical forms following the boundaries between the calcite spars. EDX-SEM microanalyses reveal that these deposits comprise substances of Fe, Mn, Pb, Zn and O that occur as solid inclusions in pits on the surface of altered calcite microcrystals. Micro-Raman spectroscopy analyses suggest the presence of calcite and ferromanganese oxides with a low degree of crystallinity. The genetic mechanism proposed for these speleothems describes an initial stage of precipitation of euhedral calcite crystals from warm water under subaqueous conditions. The crystal surfaces were eroded and corroded by colder aggressive water that smoothed the surfaces of the crystals and slightly widened the spaces between calcite spars. Metal-rich mud coming from alteration of bedrock and ore bodies filled the cave, also penetrating along the spaces between the calcite spars. When the water table fell below the cave level, part of the sediments was eroded but the cave walls remained covered with metal-rich clayey sediments. Under aerobic conditions, metals - which were reduced in previous stages - oxidized to oxides, lowering the pH and thus the crystal surface and the calcite planes between the spars were corroded. Subsequently, the polymetallic crusts became harder through evaporation within the cave, "fossilizing" the products of this process within the planes between spars. Finally, the exposed calcite surfaces continued to be altered due to CO2 diffusion into condensation water, while the boundaries between crystals were preserved against corrosion thanks to the crust coating. As a result, the external crystal edges protrude by several centimeters from the current cave wall, while the crystal surfaces are

  8. Langmuir-Schaefer films for aligned carbon nanotubes functionalized with a conjugate polymer and photoelectrochemical response enhancement.

    PubMed

    Sgobba, Vito; Giancane, Gabriele; Cannoletta, Donato; Operamolla, Alessandra; Omar, Omar Hassan; Farinola, Gianluca M; Guldi, Dirk M; Valli, Ludovico

    2014-01-01

    Single-walled carbon nanotubes (SWCNTs) were suspended in 1,2-dichloroethane by noncovalent functionalization with a low-band-gap conjugated polymer 1 alternating dialkoxyphenylene-bisthiophene units with benzo[c][2,1,3]thiadiazole monomeric units. The suspended 1/SWCNT blend was transferred onto different solid substrates by the Langmuir-Schaefer deposition method, resulting in films with a high percentage of aligned nanotubes. Photoelectrochemical characterization of 1/SWCNT thin films on indium-tin oxide showed the benefits of SWCNT alignment for photoconversion efficiency. PMID:24328296

  9. Third Harmonic Generation from Aligned Single-Wall Carbon Nanotubes

    NASA Astrophysics Data System (ADS)

    Morris, Darius T., Jr.

    Optical properties of single-wall carbon nanotubes (SWCNTs) have been extensively studied during the last decade, and much basic knowledge has been accumulated on how light emission, scattering, and absorption occur in the realm of linear optics. However, their nonlinear optical properties remain largely unexplored. Here, we have observed strong third harmonic generation from highly aligned SWCNTs with intense mid-infrared radiation. Through power dependent experiments, we have determined the absolute value of the third-order nonlinear optical susceptibility, chi(3), of our SWCNT film to be 6.92 x 10--12 esu, which is three orders of magnitude larger than that of the fused silica reference sample we used. Furthermore, through polarization-dependent third harmonic generation experiments, all the nonzero tensor elements of chi(3) have also been extracted. The contribution of the weaker tensor elements to the overall chi (3) signal has been calculated to be approximately 1/6 of that of the dominant c3z zzz component. These results open up new possibilities for application of carbon nanotubes in optoelectronics.

  10. Rainbow channeling of protons in very short carbon nanotubes with aligned Stone-Wales defects

    NASA Astrophysics Data System (ADS)

    Ćosić, M.; Petrović, S.; Bellucci, S.

    2016-01-01

    In this paper proton channeling through armchair single-walled-carbon-nanotubes (SWCNTs) with aligned Stone-Wales defects has been investigated. The energy of the proton beam was 1 GeV, while the lengths of the SWCNTs have been varied from 200 nm up to 1000 nm. The linear density of aligned defects has been varied in the whole range, from minimally up to maximally possible values. Here are presented results of a detailed morphological analysis concerning: the formation, evolution and interaction of the nanotube rainbows. The potential of the SWCNT has been constructed from Molère's expression of the Thomas-Fermi's proton-carbon interaction-energy, using the approximation of the continuous atomic string. Trajectories of the channeled protons were obtained by solving the corresponding classical equations of motions. Distributions of the transmitted protons were obtained by the Monte-Carlo simulation. The shape of angular distributions has been explained in the framework of the theory of nanotube rainbows. The aim of this study is also to investigate the applicability of the proton rainbow channeling for the characterization of nanotubes with aligned Stone-Wales defects.

  11. Microwave and Millimeter Wave Properties of Vertically-Aligned Single Wall Carbon Nanotubes Films

    NASA Astrophysics Data System (ADS)

    Haddadi, K.; Tripon-Canseliet, C.; Hivin, Q.; Ducournau, G.; Teo, E.; Coquet, P.; Tay, B. K.; Lepilliet, S.; Avramovic, V.; Chazelas, J.; Decoster, D.

    2016-05-01

    We present the experimental determination of the complex permittivity of vertically aligned single wall carbon nanotubes (SWCNTs) films grown on quartz substrates in the microwave regime from 10 MHz up to 67 GHz, with the electrical field perpendicular to the main axis of the carbon nanotubes (CNTs), based on coplanar waveguide transmission line approach together with the measurement of the microwave impedance of top metalized vertically—aligned SWCNTs grown on conductive silicon substrates up to 26 GHz. From coplanar waveguide measurements, we obtain a real part of the permittivity almost equal to unity, which is interpreted in terms of low carbon atom density (3 × 1019 at/cm3) associated with a very low imaginary part of permittivity (<10-3) in the frequency range considered due to a very small perpendicular conductivity. The microwave impedance of a vertically aligned CNTs bundle equivalent to a low resistance reveals a good conductivity (3 S/cm) parallel to the CNTs axis. From these two kinds of data, we experimentally demonstrate the tensor nature of the vertically grown CNTs bundles.

  12. An Ultra-luminous Quasar at z = 5.363 with a Ten Billion Solar Mass Black Hole and a Metal-rich DLA at z ∼ 5

    NASA Astrophysics Data System (ADS)

    Wang, Feige; Wu, Xue-Bing; Fan, Xiaohui; Yang, Jinyi; Cai, Zheng; Yi, Weimin; Zuo, Wenwen; Wang, Ran; McGreer, Ian D.; Ho, Luis C.; Kim, Minjin; Yang, Qian; Bian, Fuyan; Jiang, Linhua

    2015-07-01

    We report the discovery of an ultra-luminous quasar J030642.51+185315.8 (hereafter J0306+1853) at redshift 5.363, which hosts a supermassive black hole with {M}{BH}=(1.07+/- 0.27)× {10}10 {M}ȯ . With an absolute magnitude {M}1450=-28.92 and a bolometric luminosity {L}{bol}∼ 3.4× {10}14{L}ȯ , J0306+1853 is one of the most luminous objects in the early universe. It is not likely to be a beamed source based on its small flux variability, low radio loudness, and normal broad emission lines. In addition, a z=4.986 damped Lyα system (DLA) with [{{M}}/{{H}}]=-1.3+/- 0.1, among the most metal-rich DLAs at z≳ 5, is detected in the absorption spectrum of this quasar. This ultra-luminous quasar puts strong constraints on the bright end of the quasar luminosity function and massive end of the black hole mass function. It will provide a unique laboratory for the study of BH growth and the co-evolution between a BH and the host galaxy with multi-wavelength follow-up observations. The future high-resolution spectra will give more insight into the DLA and other absorption systems along the line of sight of J0306+1853.

  13. Heavily-hydrated lithic clasts in CH chondrites and the related, metal-rich chondrites Queen Alexandra Range 94411 and Hammadah al Hamra 237

    NASA Astrophysics Data System (ADS)

    Greshake, A.; Krot, A. N.; Meibom, A.; Weisberg, M. K.; Zolensky, M. E.; Keil, K.

    2002-02-01

    Fine-grained, heavily-hydrated lithic clasts in the metal-rich (CB) chondrites Queen Alexandra Range (QUE) 94411 and Hammadah al Hamra 237 and CH chondrites, such as Patuxent Range (PAT) 91546 and Allan Hills (ALH) 85085, are mineralogically similar suggesting genetic relationship between these meteorites. These clasts contain no anhydrous silicates and consist of framboidal and platelet magnetite, prismatic sulfides (pentlandite and pyrrhotite), and Fe-Mn-Mg-bearing Ca-carbonates set in a phyllosilicate-rich matrix. Two types of phyllosilicates were identified: serpentine, with basal spacing of ?0.73 nm, and saponite, with basal spacings of about 1.1-1.2 nm. Chondrules and FeNi-metal grains in CB and CH chondrites are believed to have formed at high temperature (>1300 K) by condensation in a solar nebula region that experienced complete vaporization. The absence of aqueous alteration of chondrules and metal grains in CB and CH chondrites indicates that the clasts experienced hydration in an asteroidal setting prior to incorporation into the CH and CB parent bodies. The hydrated clasts were either incorporated during regolith gardening or accreted together with chondrules and FeNi-metal grains after these high-temperature components had been transported from their hot formation region to a much colder region of the solar nebula.

  14. MAVID multiple alignment server.

    PubMed

    Bray, Nicolas; Pachter, Lior

    2003-07-01

    MAVID is a multiple alignment program suitable for many large genomic regions. The MAVID web server allows biomedical researchers to quickly obtain multiple alignments for genomic sequences and to subsequently analyse the alignments for conserved regions. MAVID has been successfully used for the alignment of closely related species such as primates and also for the alignment of more distant organisms such as human and fugu. The server is fast, capable of aligning hundreds of kilobases in less than a minute. The multiple alignment is used to build a phylogenetic tree for the sequences, which is subsequently used as a basis for identifying conserved regions in the alignment. The server can be accessed at http://baboon.math.berkeley.edu/mavid/.

  15. Nearest Alignment Space Termination

    2006-07-13

    Near Alignment Space Termination (NAST) is the Greengenes algorithm that matches up submitted sequences with the Greengenes database to look for similarities and align the submitted sequences based on those similarities.

  16. SPITZER OBSERVATIONS OF GJ 3470 b: A VERY LOW-DENSITY NEPTUNE-SIZE PLANET ORBITING A METAL-RICH M DWARF

    SciTech Connect

    Demory, Brice-Olivier; Seager, Sara; Torres, Guillermo; Neves, Vasco; Santos, Nuno; Rogers, Leslie; Gillon, Michaeel; Horch, Elliott; Sullivan, Peter; Bonfils, Xavier; Delfosse, Xavier; Forveille, Thierry; Smalley, Barry

    2013-05-10

    We present Spitzer/IRAC 4.5 {mu}m transit photometry of GJ 3470 b, a Neptune-size planet orbiting an M1.5 dwarf star with a 3.3 day period recently discovered in the course of the HARPS M-dwarf survey. We refine the stellar parameters by employing purely empirical mass-luminosity and surface brightness relations constrained by our updated value for the mean stellar density, and additional information from new near-infrared spectroscopic observations. We derive a stellar mass of M{sub *}= 0.539{sup +0.047}{sub -0.043} M{sub sun} and a radius of R{sub *}= 0.568{sup +0.037}{sub -0.031} R{sub sun}. We determine the host star of GJ 3470 b to be metal-rich, with a metallicity of [Fe/H] = +0.20 {+-} 0.10 and an effective temperature of T{sub eff} = 3600 {+-} 100 K. The revised stellar parameters yield a planetary radius R{sub p}= 4.83{sub -0.21}{sup +0.22} R{sub Circled-Plus} that is 13% larger than the value previously reported in the literature. We find a planetary mass M{sub p}= 13.9{sup +1.5}{sub -1.4} M{sub Circled-Plus} that translates to a very low planetary density, {rho}{sub p}= 0.72{sup +0.13}{sub -0.12} g cm{sup -3}, which is 33% smaller than the original value. With a mean density half of that of GJ 436 b, GJ 3470 b is an example of a very low-density low-mass planet, similar to Kepler-11 d, Kepler-11 e, and Kepler-18 c, but orbiting a much brighter nearby star that is more conducive to follow-up studies.

  17. STELLAR LIFETIME AND ULTRAVIOLET PROPERTIES OF THE OLD METAL-RICH GALACTIC OPEN CLUSTER NGC 6791: A PATHWAY TO UNDERSTAND THE ULTRAVIOLET UPTURN OF ELLIPTICAL GALAXIES

    SciTech Connect

    Buzzoni, Alberto; Bertone, Emanuele; Carraro, Giovanni; Buson, Lucio

    2012-04-10

    The evolutionary properties of the old metal-rich Galactic open cluster NGC 6791 are assessed based on deep UB photometry and Two Micron All Sky Survey JK data. For the 4739 stars in the cluster, bolometric luminosity and effective temperature have been derived from theoretical (U - B) and (J - K) color fitting. The derived H-R diagram has been matched with the UVBLUE grid of synthetic stellar spectra to obtain the integrated spectral energy distribution (SED) of the system, together with a full set of UV (Fanelli) and optical (Lick) narrowband indices. The total bolometric magnitude of NGC 6791 is M{sup bol}{sub 6791} = -6.29, with a color (B - V){sub 6791} = 0.97. The cluster appears to be a fairly good proxy of standard elliptical galaxies, although with significantly bluer infrared colors, a shallower 4000 A Balmer break, and a lower Mg{sub 2} index. The confirmed presence of a dozen hot stars along their extreme horizontal-branch evolution leads the cluster SED to consistently match the properties of the most active UV-upturn galaxies, with 1.7% {+-} 0.4% of the total bolometric luminosity emitted shortward of 2500 Angstrom-Sign . The cluster helium abundance results in Y{sub 6791} = 0.30 {+-} 0.04, while the post-main-sequence (PMS) implied stellar lifetime from star number counts fairly agrees with the theoretical expectations from both the PADOVA and BASTI stellar tracks. A PMS fuel consumption of 0.43 {+-} 0.01 M{sub Sun} is found for NGC 6791 stars, in close agreement with the estimated mass of cluster He-rich white dwarfs. Such a tight figure may lead one to suspect that a fraction of the cluster stellar population does not actually reach the minimum mass required to effectively ignite He in the stellar core.

  18. Stellar Lifetime and Ultraviolet Properties of the Old Metal-rich Galactic Open Cluster NGC 6791: A Pathway to Understand the Ultraviolet Upturn of Elliptical Galaxies

    NASA Astrophysics Data System (ADS)

    Buzzoni, Alberto; Bertone, Emanuele; Carraro, Giovanni; Buson, Lucio

    2012-04-01

    The evolutionary properties of the old metal-rich Galactic open cluster NGC 6791 are assessed based on deep UB photometry and Two Micron All Sky Survey JK data. For the 4739 stars in the cluster, bolometric luminosity and effective temperature have been derived from theoretical (U - B) and (J - K) color fitting. The derived H-R diagram has been matched with the UVBLUE grid of synthetic stellar spectra to obtain the integrated spectral energy distribution (SED) of the system, together with a full set of UV (Fanelli) and optical (Lick) narrowband indices. The total bolometric magnitude of NGC 6791 is M bol 6791 = -6.29, with a color (B - V)6791 = 0.97. The cluster appears to be a fairly good proxy of standard elliptical galaxies, although with significantly bluer infrared colors, a shallower 4000 Å Balmer break, and a lower Mg2 index. The confirmed presence of a dozen hot stars along their extreme horizontal-branch evolution leads the cluster SED to consistently match the properties of the most active UV-upturn galaxies, with 1.7% ± 0.4% of the total bolometric luminosity emitted shortward of 2500 Å. The cluster helium abundance results in Y 6791 = 0.30 ± 0.04, while the post-main-sequence (PMS) implied stellar lifetime from star number counts fairly agrees with the theoretical expectations from both the PADOVA and BASTI stellar tracks. A PMS fuel consumption of 0.43 ± 0.01 M ⊙ is found for NGC 6791 stars, in close agreement with the estimated mass of cluster He-rich white dwarfs. Such a tight figure may lead one to suspect that a fraction of the cluster stellar population does not actually reach the minimum mass required to effectively ignite He in the stellar core. Based on observations carried out at the Italian Telescopio Nazionale Galileo, operated by INAF at the Roque de los Muchachos Observatory (La Palma, Spain).

  19. The Distances to Open Clusters from Main-sequence Fitting. V. Extension of Color Calibration and Test Using Cool and Metal-rich Stars in NGC 6791

    NASA Astrophysics Data System (ADS)

    An, Deokkeun; Terndrup, Donald M.; Pinsonneault, Marc H.; Lee, Jae-Woo

    2015-09-01

    We extend our effort to calibrate stellar isochrones in the Johnson-Cousins ({{BVI}}C) and the 2MASS ({{JHK}}s) filter systems based on observations of well-studied open clusters. Using cool main-sequence (MS) stars in Praesepe, we define empirical corrections to the Lejeune et al. color-effective temperature ({T}{eff}) relations down to {T}{eff}˜ 3600 {{K}}, complementing our previous work based on the Hyades and the Pleiades. We apply empirically corrected isochrones to existing optical and near-infrared photometry of cool ({T}{eff}≲ 5500 {{K}}) and metal-rich ([{Fe}/{{H}}]= +0.37) MS stars in NGC 6791. The current methodology relies on an assumption that color-{T}{eff} corrections are independent of metallicity, but we find that estimates of color excess and distance from color-magnitude diagrams with different color indices converge on each other at the precisely known metallicity of the cluster. Along with a satisfactory agreement with eclipsing binary data in the cluster, we view the improved internal consistency as a validation of our calibrated isochrones at super-solar metallicities. For very cool stars ({T}{eff}≲ 4800 {{K}}), however, we find that B - V colors of our models are systematically redder than the cluster photometry by ˜0.02 mag. We use color-{T}{eff} transformations from the infrared flux method and alternative photometry to examine a potential color-scale error in the input cluster photometry. After excluding B - V photometry of these cool MS stars, we derive E(B\\-\\V)=0.105+/- 0.014, [M/H]\\=\\+0.42+/- 0.07, {(m\\-\\M)}0=13.04+/- 0.08, and the age of 9.5 ± 0.3 Gyr for NGC 6791.

  20. Girder Alignment Plan

    SciTech Connect

    Wolf, Zackary; Ruland, Robert; LeCocq, Catherine; Lundahl, Eric; Levashov, Yurii; Reese, Ed; Rago, Carl; Poling, Ben; Schafer, Donald; Nuhn, Heinz-Dieter; Wienands, Uli; /SLAC

    2010-11-18

    The girders for the LCLS undulator system contain components which must be aligned with high accuracy relative to each other. The alignment is one of the last steps before the girders go into the tunnel, so the alignment must be done efficiently, on a tight schedule. This note documents the alignment plan which includes efficiency and high accuracy. The motivation for girder alignment involves the following considerations. Using beam based alignment, the girder position will be adjusted until the beam goes through the center of the quadrupole and beam finder wire. For the machine to work properly, the undulator axis must be on this line and the center of the undulator beam pipe must be on this line. The physics reasons for the undulator axis and undulator beam pipe axis to be centered on the beam are different, but the alignment tolerance for both are similar. In addition, the beam position monitor must be centered on the beam to preserve its calibration. Thus, the undulator, undulator beam pipe, quadrupole, beam finder wire, and beam position monitor axes must all be aligned to a common line. All relative alignments are equally important, not just, for example, between quadrupole and undulator. We begin by making the common axis the nominal beam axis in the girder coordinate system. All components will be initially aligned to this axis. A more accurate alignment will then position the components relative to each other, without incorporating the girder itself.

  1. Interstellar Dust Grain Alignment

    NASA Astrophysics Data System (ADS)

    Andersson, B.-G.; Lazarian, A.; Vaillancourt, John E.

    2015-08-01

    Interstellar polarization at optical-to-infrared wavelengths is known to arise from asymmetric dust grains aligned with the magnetic field. This effect provides a potentially powerful probe of magnetic field structure and strength if the details of the grain alignment can be reliably understood. Theory and observations have recently converged on a quantitative, predictive description of interstellar grain alignment based on radiative processes. The development of a general, analytical model for this radiative alignment torque (RAT) theory has allowed specific, testable predictions for realistic interstellar conditions. We outline the theoretical and observational arguments in favor of RAT alignment, as well as reasons the "classical" paramagnetic alignment mechanism is unlikely to work, except possibly for the very smallest grains. With further detailed characterization of the RAT mechanism, grain alignment and polarimetry promise to not only better constrain the interstellar magnetic field but also provide new information on the dust characteristics.

  2. Charge trapping in aligned single-walled carbon nanotube arrays induced by ionizing radiation exposure

    SciTech Connect

    Esqueda, Ivan S.; Cress, Cory D.; Che, Yuchi; Cao, Yu; Zhou, Chongwu

    2014-02-07

    The effects of near-interfacial trapping induced by ionizing radiation exposure of aligned single-walled carbon nanotube (SWCNT) arrays are investigated via measurements of gate hysteresis in the transfer characteristics of aligned SWCNT field-effect transistors. Gate hysteresis is attributed to charge injection (i.e., trapping) from the SWCNTs into radiation-induced traps in regions near the SWCNT/dielectric interface. Self-consistent calculations of surface-potential, carrier density, and trapped charge are used to describe hysteresis as a function of ionizing radiation exposure. Hysteresis width (h) and its dependence on gate sweep range are investigated analytically. The effects of non-uniform trap energy distributions on the relationship between hysteresis, gate sweep range, and total ionizing dose are demonstrated with simulations and verified experimentally.

  3. The K2-ESPRINT Project III: A Close-in Super-Earth around a Metal-rich Mid-M Dwarf

    NASA Astrophysics Data System (ADS)

    Hirano, Teruyuki; Fukui, Akihiko; Mann, Andrew W.; Sanchis-Ojeda, Roberto; Gaidos, Eric; Narita, Norio; Dai, Fei; Van Eylen, Vincent; Lee, Chien-Hsiu; Onozato, Hiroki; Ryu, Tsuguru; Kusakabe, Nobuhiko; Ito, Ayaka; Kuzuhara, Masayuki; Onitsuka, Masahiro; Tatsuuma, Misako; Nowak, Grzegorz; Pallè, Enric; Ribas, Ignasi; Tamura, Motohide; Yu, Liang

    2016-03-01

    We validate a {R}p=2.32+/- 0.24{R}\\oplus planet on a close-in orbit (P = 2.260455 ± 0.000041 days) around K2-28 (EPIC 206318379), a metal-rich M4-type dwarf in the Campaign 3 field of the K2 mission. Our follow-up observations included multi-band transit observations from the optical to the near-infrared, low-resolution spectroscopy, and high-resolution adaptive optics (AO) imaging. We perform a global fit to all of the observed transits using a Gaussian process-based method and show that the transit depths in all of the passbands adopted for the ground-based transit follow-ups ({r}2\\prime ,{z}s,2,J,H,{K}s) are within ˜2σ of the K2 value. Based on a model of the background stellar population and the absence of nearby sources in our AO imaging, we estimate the probability that a background eclipsing binary could cause a false positive to be <2 × 10-5. We also show that K2-28 cannot have a physically associated companion of stellar type later than M4, based on the measurement of almost identical transit depths in multiple passbands. There is a low probability for an M4 dwarf companion (≈ {0.072}-0.04+0.02), but even if this were the case, the size of K2-28b falls within the planetary regime. K2-28b has the same radius (within 1σ) and experiences irradiation from its host star similar to the well-studied GJ 1214b. Given the relative brightness of K2-28 in the near-infrared ({m}{Kep}=14.85 mag and mH = 11.03 mag) and relatively deep transit (0.6%-0.7%), a comparison between the atmospheric properties of these two planets with future observations would be especially interesting.

  4. Rare earth metal-rich indides RE14Rh 3-xIn 3 ( RE=Y, Dy, Ho, Er, Tm, Lu)

    NASA Astrophysics Data System (ADS)

    Zaremba, Roman; Pöttgen, Rainer

    2007-09-01

    The rare earth ( RE) metal-rich indides RE14Rh 3-xIn 3 ( RE=Y, Dy, Ho, Er, Tm, Lu) can be synthesized from the elements by arc-melting or induction melting in tantalum crucibles. They were investigated by X-ray diffraction on powders and single crystals: Lu 14Co 3In 3 type, space group P4 2/ nmc, Z=4, a=961.7(1), c=2335.5(5) pm, w R2=0.052, 2047 F2 values, 62 variables for Y 14Rh 3In 3, a=956.8(1), c=2322.5(5) pm, w R2=0.068, 1730 F2 values, 63 variables for Dy 14Rh 2.89(1)In 3, a=952.4(1), c=2309.2(5) pm, w R2=0.041, 1706 F2 values, 63 variables for Ho 14Rh 2.85(1)In 3, a=948.6(1), c=2302.8(5) pm, w R2=0.053, 1977 F2 values, 63 variables for Er 14Rh 2.86(1)In 3, a=943.8(1), c=2291.5(5) pm, w R2=0.065, 1936 F2 values, 63 variables for Tm 14Rh 2.89(1)In 3, and a=937.8(1), c=2276.5(5) pm, w R2=0.050, 1637 F2 values, 63 variables for Lu 14Rh 2.74(1)In 3. Except Yb 14Rh 3In 3, the 8 g Rh1 sites show small defects. Striking structural motifs are rhodium-centered trigonal prisms formed by the RE atoms with comparatively short Rh- RE distances (271-284 pm in Y 14Rh 3In 3). These prisms are condensed via common corners and edges building two-dimensional polyhedral units. Both crystallographically independent indium sites show distorted icosahedral coordination. The icosahedra around In2 are interpenetrating, leading to In2-In2 pairs (309 pm in Y 14Rh 3In 3).

  5. Inhalable Metal-Rich Air Particles and Histone H3K4 Dimethylation and H3K9 Acetylation in a Cross-sectional Study of Steel Workers

    PubMed Central

    Cantone, Laura; Nordio, Francesco; Hou, Lifang; Apostoli, Pietro; Bonzini, Matteo; Tarantini, Letizia; Angelici, Laura; Bollati, Valentina; Zanobetti, Antonella; Schwartz, Joel; Bertazzi, Pier A.

    2011-01-01

    Background: Epidemiology investigations have linked exposure to ambient and occupational air particulate matter (PM) with increased risk of lung cancer. PM contains carcinogenic and toxic metals, including arsenic and nickel, which have been shown in in vitro studies to induce histone modifications that activate gene expression by inducing open-chromatin states. Whether inhalation of metal components of PM induces histone modifications in human subjects is undetermined. Objectives: We investigated whether the metal components of PM determined activating histone modifications in 63 steel workers with well-characterized exposure to metal-rich PM. Methods: We determined histone 3 lysine 4 dimethylation (H3K4me2) and histone 3 lysine 9 acetylation (H3K9ac) on histones from blood leukocytes. Exposure to inhalable metal components (aluminum, manganese, nickel, zinc, arsenic, lead, iron) and to total PM was estimated for each study subject. Results: Both H3K4me2 and H3K9ac increased in association with years of employment in the plant (p-trend = 0.04 and 0.006, respectively). H3K4me2 increased in association with air levels of nickel [β = 0.16; 95% confidence interval (CI), 0.03–0.3], arsenic (β = 0.16; 95% CI, 0.02–0.3), and iron (β = 0.14; 95% CI, 0.01–0.26). H3K9ac showed nonsignificant positive associations with air levels of nickel (β = 0.24; 95% CI, –0.02 to 0.51), arsenic (β = 0.21; 95% CI, –0.06 to 0.48), and iron (β = 0.22; 95% CI, –0.03 to 0.47). Cumulative exposures to nickel and arsenic, defined as the product of years of employment by metal air levels, were positively correlated with both H3K4me2 (nickel: β = 0.16; 95% CI, 0.01–0.3; arsenic: β = 0.16; 95% CI, 0.03–0.29) and H3K9ac (nickel: β = 0.27; 95% CI, 0.01–0.54; arsenic: β = 0.28; 95% CI, 0.04–0.51). Conclusions: Our results indicate histone modifications as a novel epigenetic mechanism induced in human subjects by long-term exposure to inhalable nickel and arsenic. PMID

  6. Horizontal carbon nanotube alignment.

    PubMed

    Cole, Matthew T; Cientanni, Vito; Milne, William I

    2016-09-21

    The production of horizontally aligned carbon nanotubes offers a rapid means of realizing a myriad of self-assembled near-atom-scale technologies - from novel photonic crystals to nanoscale transistors. The ability to reproducibly align anisotropic nanostructures has huge technological value. Here we review the present state-of-the-art in horizontal carbon nanotube alignment. For both in and ex situ approaches, we quantitatively assess the reported linear packing densities alongside the degree of alignment possible for each of these core methodologies. PMID:27546174

  7. Horizontal carbon nanotube alignment.

    PubMed

    Cole, Matthew T; Cientanni, Vito; Milne, William I

    2016-09-21

    The production of horizontally aligned carbon nanotubes offers a rapid means of realizing a myriad of self-assembled near-atom-scale technologies - from novel photonic crystals to nanoscale transistors. The ability to reproducibly align anisotropic nanostructures has huge technological value. Here we review the present state-of-the-art in horizontal carbon nanotube alignment. For both in and ex situ approaches, we quantitatively assess the reported linear packing densities alongside the degree of alignment possible for each of these core methodologies.

  8. Orthodontics and Aligners

    MedlinePlus

    ... Repairing Chipped Teeth Teeth Whitening Tooth-Colored Fillings Orthodontics and Aligners Straighten teeth for a healthier smile. Orthodontics When consumers think about orthodontics, braces are the ...

  9. Tidal alignment of galaxies

    NASA Astrophysics Data System (ADS)

    Blazek, Jonathan; Vlah, Zvonimir; Seljak, Uroš

    2015-08-01

    We develop an analytic model for galaxy intrinsic alignments (IA) based on the theory of tidal alignment. We calculate all relevant nonlinear corrections at one-loop order, including effects from nonlinear density evolution, galaxy biasing, and source density weighting. Contributions from density weighting are found to be particularly important and lead to bias dependence of the IA amplitude, even on large scales. This effect may be responsible for much of the luminosity dependence in IA observations. The increase in IA amplitude for more highly biased galaxies reflects their locations in regions with large tidal fields. We also consider the impact of smoothing the tidal field on halo scales. We compare the performance of this consistent nonlinear model in describing the observed alignment of luminous red galaxies with the linear model as well as the frequently used "nonlinear alignment model," finding a significant improvement on small and intermediate scales. We also show that the cross-correlation between density and IA (the "GI" term) can be effectively separated into source alignment and source clustering, and we accurately model the observed alignment down to the one-halo regime using the tidal field from the fully nonlinear halo-matter cross correlation. Inside the one-halo regime, the average alignment of galaxies with density tracers no longer follows the tidal alignment prediction, likely reflecting nonlinear processes that must be considered when modeling IA on these scales. Finally, we discuss tidal alignment in the context of cosmic shear measurements.

  10. Alignability of Optical Interconnects

    NASA Astrophysics Data System (ADS)

    Beech, Russell Scott

    With the continuing drive towards higher speed, density, and functionality in electronics, electrical interconnects become inadequate. Due to optics' high speed and bandwidth, freedom from capacitive loading effects, and freedom from crosstalk, optical interconnects can meet more stringent interconnect requirements. But, an optical interconnect requires additional components, such as an optical source and detector, lenses, holographic elements, etc. Fabrication and assembly of an optical interconnect requires precise alignment of these components. The successful development and deployment of optical interconnects depend on how easily the interconnect components can be aligned and/or how tolerant the interconnect is to misalignments. In this thesis, a method of quantitatively specifying the relative difficulty of properly aligning an optical interconnect is described. Ways of using this theory of alignment to obtain design and packaging guidelines for optical interconnects are examined. The measure of the ease with which an optical interconnect can be aligned, called the alignability, uses the efficiency of power transfer as a measure of alignment quality. The alignability is related to interconnect package design through the overall cost measure, which depends upon various physical parameters of the interconnect, such as the cost of the components and the time required for fabrication and alignment. Through a mutual dependence on detector size, the relationship between an interconnect's alignability and its bandwidth, signal-to-noise ratio, and bit-error -rate is examined. The results indicate that a range of device sizes exists for which given performance threshold values are satisfied. Next, the alignability of integrated planar-optic backplanes is analyzed in detail. The resulting data show that the alignability can be optimized by varying the substrate thickness or the angle of reflection. By including the effects of crosstalk, in a multi-channel backplane, the

  11. Hole-Aligning Tool

    NASA Technical Reports Server (NTRS)

    Collins, Frank A.; Saude, Frank; Sep, Martin J.

    1996-01-01

    Tool designed for use in aligning holes in plates or other structural members to be joined by bolt through holes. Holes aligned without exerting forces perpendicular to planes of holes. Tool features screw-driven-wedge design similar to (but simpler than) that of some automotive exhaust-pipe-expanding tools.

  12. Kepler-77b: a very low albedo, Saturn-mass transiting planet around a metal-rich solar-like star

    NASA Astrophysics Data System (ADS)

    Gandolfi, D.; Parviainen, H.; Fridlund, M.; Hatzes, A. P.; Deeg, H. J.; Frasca, A.; Lanza, A. F.; Prada Moroni, P. G.; Tognelli, E.; McQuillan, A.; Aigrain, S.; Alonso, R.; Antoci, V.; Cabrera, J.; Carone, L.; Csizmadia, Sz.; Djupvik, A. A.; Guenther, E. W.; Jessen-Hansen, J.; Ofir, A.; Telting, J.

    2013-09-01

    We report the discovery of Kepler-77b (alias KOI-127.01), a Saturn-mass transiting planet in a 3.6-day orbit around a metal-rich solar-like star. We combined the publicly available Kepler photometry (quarters 1-13) with high-resolution spectroscopy from the Sandiford at McDonald and FIES at NOT spectrographs. We derived the system parameters via a simultaneous joint fit to the photometric and radial velocity measurements. Our analysis is based on the Bayesian approach and is carried out by sampling the parameter posterior distributions using a Markov chain Monte Carlo simulation. Kepler-77b is a moderately inflated planet with a mass of Mp = 0.430 ± 0.032 MJup, a radius of Rp = 0.960 ± 0.016 RJup, and a bulk density of ρp = 0.603 ± 0.055 g cm-3. It orbits a slowly rotating (Prot = 36 ± 6 days) G5 V star with M⋆ = 0.95 ± 0.04 M⊙, R⋆ = 0.99 ± 0.02 R⊙, Teff = 5520 ± 60 K, [M/H] = 0.20 ± 0.05 dex, that has an age of 7.5 ± 2.0 Gyr. The lack of detectable planetary occultation with a depth higher than ~10 ppm implies a planet geometric and Bond albedo of Ag ≤ 0.087 ± 0.008 and AB ≤ 0.058 ± 0.006, respectively, placing Kepler-77b among the gas-giant planets with the lowest albedo known so far. We found neither additional planetary transit signals nor transit-timing variations at a level of ~0.5 min, in accordance with the trend that close-in gas giant planets seem to belong to single-planet systems. The 106 transitsobserved in short-cadence mode by Kepler for nearly 1.2 years show no detectable signatures of the planet's passage in front of starspots. We explored the implications of the absence of detectable spot-crossing events for the inclination of the stellar spin-axis, the sky-projected spin-orbit obliquity, and the latitude of magnetically active regions. Based on observations obtained with the 2.1-m Otto Struve telescope at McDonald Observatory, Texas, USA.Based on observations obtained with the Nordic Optical Telescope, operated on the

  13. Precision alignment device

    DOEpatents

    Jones, Nelson E.

    1990-01-01

    Apparatus for providing automatic alignment of beam devices having an associated structure for directing, collimating, focusing, reflecting, or otherwise modifying the main beam. A reference laser is attached to the structure enclosing the main beam producing apparatus and produces a reference beam substantially parallel to the main beam. Detector modules containing optical switching devices and optical detectors are positioned in the path of the reference beam and are effective to produce an electrical output indicative of the alignment of the main beam. This electrical output drives servomotor operated adjustment screws to adjust the position of elements of the structure associated with the main beam to maintain alignment of the main beam.

  14. Precision alignment device

    DOEpatents

    Jones, N.E.

    1988-03-10

    Apparatus for providing automatic alignment of beam devices having an associated structure for directing, collimating, focusing, reflecting, or otherwise modifying the main beam. A reference laser is attached to the structure enclosing the main beam producing apparatus and produces a reference beam substantially parallel to the main beam. Detector modules containing optical switching devices and optical detectors are positioned in the path of the reference beam and are effective to produce an electrical output indicative of the alignment of the main beam. This electrical output drives servomotor operated adjustment screws to adjust the position of elements of the structure associated with the main beam to maintain alignment of the main beam. 5 figs.

  15. Galaxy Alignments: An Overview

    NASA Astrophysics Data System (ADS)

    Joachimi, Benjamin; Cacciato, Marcello; Kitching, Thomas D.; Leonard, Adrienne; Mandelbaum, Rachel; Schäfer, Björn Malte; Sifón, Cristóbal; Hoekstra, Henk; Kiessling, Alina; Kirk, Donnacha; Rassat, Anais

    2015-11-01

    The alignments between galaxies, their underlying matter structures, and the cosmic web constitute vital ingredients for a comprehensive understanding of gravity, the nature of matter, and structure formation in the Universe. We provide an overview on the state of the art in the study of these alignment processes and their observational signatures, aimed at a non-specialist audience. The development of the field over the past one hundred years is briefly reviewed. We also discuss the impact of galaxy alignments on measurements of weak gravitational lensing, and discuss avenues for making theoretical and observational progress over the coming decade.

  16. Radiative Grain Alignment

    NASA Astrophysics Data System (ADS)

    Andersson, B. G.

    2015-12-01

    Polarization due to aligned dust grains was discovered in the interstellar medium more than 60 years ago. A quantitative, observationally well tested theory of the phenomenon has finally emerged in the last decade, promising not only an improved understanding of interstellar magnetic fields, but new tools for studying the dust environments and grain characteristics. This Radiative Alignment Torque (RAT) theory also has many potential applications in solar system physics, including for comet dust characteristics. I will review the main aspects of the theory and the observational tests performed to date, as well as some of the new possibilities for using polarization as a tool to study dust and its environment, with RAT alignment.

  17. Hybrid vehicle motor alignment

    DOEpatents

    Levin, Michael Benjamin

    2001-07-03

    A rotor of an electric motor for a motor vehicle is aligned to an axis of rotation for a crankshaft of an internal combustion engine having an internal combustion engine and an electric motor. A locator is provided on the crankshaft, a piloting tool is located radially by the first locator to the crankshaft. A stator of the electric motor is aligned to a second locator provided on the piloting tool. The stator is secured to the engine block. The rotor is aligned to the crankshaft and secured thereto.

  18. Pairwise Sequence Alignment Library

    SciTech Connect

    Jeff Daily, PNNL

    2015-05-20

    Vector extensions, such as SSE, have been part of the x86 CPU since the 1990s, with applications in graphics, signal processing, and scientific applications. Although many algorithms and applications can naturally benefit from automatic vectorization techniques, there are still many that are difficult to vectorize due to their dependence on irregular data structures, dense branch operations, or data dependencies. Sequence alignment, one of the most widely used operations in bioinformatics workflows, has a computational footprint that features complex data dependencies. The trend of widening vector registers adversely affects the state-of-the-art sequence alignment algorithm based on striped data layouts. Therefore, a novel SIMD implementation of a parallel scan-based sequence alignment algorithm that can better exploit wider SIMD units was implemented as part of the Parallel Sequence Alignment Library (parasail). Parasail features: Reference implementations of all known vectorized sequence alignment approaches. Implementations of Smith Waterman (SW), semi-global (SG), and Needleman Wunsch (NW) sequence alignment algorithms. Implementations across all modern CPU instruction sets including AVX2 and KNC. Language interfaces for C/C++ and Python.

  19. Pairwise Sequence Alignment Library

    2015-05-20

    Vector extensions, such as SSE, have been part of the x86 CPU since the 1990s, with applications in graphics, signal processing, and scientific applications. Although many algorithms and applications can naturally benefit from automatic vectorization techniques, there are still many that are difficult to vectorize due to their dependence on irregular data structures, dense branch operations, or data dependencies. Sequence alignment, one of the most widely used operations in bioinformatics workflows, has a computational footprintmore » that features complex data dependencies. The trend of widening vector registers adversely affects the state-of-the-art sequence alignment algorithm based on striped data layouts. Therefore, a novel SIMD implementation of a parallel scan-based sequence alignment algorithm that can better exploit wider SIMD units was implemented as part of the Parallel Sequence Alignment Library (parasail). Parasail features: Reference implementations of all known vectorized sequence alignment approaches. Implementations of Smith Waterman (SW), semi-global (SG), and Needleman Wunsch (NW) sequence alignment algorithms. Implementations across all modern CPU instruction sets including AVX2 and KNC. Language interfaces for C/C++ and Python.« less

  20. PDV Probe Alignment Technique

    SciTech Connect

    Whitworth, T L; May, C M; Strand, O T

    2007-10-26

    This alignment technique was developed while performing heterodyne velocimetry measurements at LLNL. There are a few minor items needed, such as a white card with aperture in center, visible alignment laser, IR back reflection meter, and a microscope to view the bridge surface. The work was performed on KCP flyers that were 6 and 8 mils wide. The probes used were Oz Optics manufactured with focal distances of 42mm and 26mm. Both probes provide a spot size of approximately 80?m at 1550nm. The 42mm probes were specified to provide an internal back reflection of -35 to -40dB, and the probe back reflections were measured to be -37dB and -33dB. The 26mm probes were specified as -30dB and both measured -30.5dB. The probe is initially aligned normal to the flyer/bridge surface. This provides a very high return signal, up to -2dB, due to the bridge reflectivity. A white card with a hole in the center as an aperture can be used to check the reflected beam position relative to the probe and launch beam, and the alignment laser spot centered on the bridge, see Figure 1 and Figure 2. The IR back reflection meter is used to measure the dB return from the probe and surface, and a white card or similar object is inserted between the probe and surface to block surface reflection. It may take several iterations between the visible alignment laser and the IR back reflection meter to complete this alignment procedure. Once aligned normal to the surface, the probe should be tilted to position the visible alignment beam as shown in Figure 3, and the flyer should be translated in the X and Y axis to reposition the alignment beam onto the flyer as shown in Figure 4. This tilting of the probe minimizes the amount of light from the bridge reflection into the fiber within the probe while maintaining the alignment as near normal to the flyer surface as possible. When the back reflection is measured after the tilt adjustment, the level should be about -3dB to -6dB higher than the probes

  1. Curriculum Alignment Research Suggests that Alignment Can Improve Student Achievement

    ERIC Educational Resources Information Center

    Squires, David

    2012-01-01

    Curriculum alignment research has developed showing the relationship among three alignment categories: the taught curriculum, the tested curriculum and the written curriculum. Each pair (for example, the taught and the written curriculum) shows a positive impact for aligning those results. Following this, alignment results from the Third…

  2. Optics Alignment Panel

    NASA Technical Reports Server (NTRS)

    Schroeder, Daniel J.

    1992-01-01

    The Optics Alignment Panel (OAP) was commissioned by the HST Science Working Group to determine the optimum alignment of the OTA optics. The goal was to find the position of the secondary mirror (SM) for which there is no coma or astigmatism in the camera images due to misaligned optics, either tilt or decenter. The despace position was reviewed of the SM and the optimum focus was sought. The results of these efforts are as follows: (1) the best estimate of the aligned position of the SM in the notation of HDOS is (DZ,DY,TZ,TY) = (+248 microns, +8 microns, +53 arcsec, -79 arcsec), and (2) the best focus, defined to be that despace which maximizes the fractional energy at 486 nm in a 0.1 arcsec radius of a stellar image, is 12.2 mm beyond paraxial focus. The data leading to these conclusions, and the estimated uncertainties in the final results, are presented.

  3. Barrel alignment fixture

    NASA Astrophysics Data System (ADS)

    Sheeley, J. D.

    1981-04-01

    Fabrication of slapper type detonator cables requires bonding of a thin barrel over a bridge. Location of the barrel hole with respect to the bridge is critical: the barrel hole must be centered over the bridge uniform spacing on each side. An alignment fixture which permits rapid adjustment of the barrel position with respect to the bridge is described. The barrel is manipulated by pincer-type fingers which are mounted on a small x-y table equipped with micrometer adjustments. Barrel positioning, performed under a binocular microscopy, is rapid and accurate. After alignment, the microscope is moved out of position and an infrared (IR) heat source is aimed at the barrel. A 5-second pulse of infrared heat flows the adhesive under the barrel and bonds it to the cable. Sapphire and Fotoform glass barrels were bonded successfully with the alignment fixture.

  4. Magnetically aligned supramolecular hydrogels.

    PubMed

    Wallace, Matthew; Cardoso, Andre Zamith; Frith, William J; Iggo, Jonathan A; Adams, Dave J

    2014-12-01

    The magnetic-field-induced alignment of the fibrillar structures present in an aqueous solution of a dipeptide gelator, and the subsequent retention of this alignment upon transformation to a hydrogel upon the addition of CaCl2 or upon a reduction in solution pH is reported. Utilising the switchable nature of the magnetic field coupled with the slow diffusion of CaCl2 , it is possible to precisely control the extent of anisotropy across a hydrogel, something that is generally very difficult to do using alternative methods. The approach is readily extended to other compounds that form viscous solutions at high pH. It is expected that this work will greatly expand the utility of such low-molecular-weight gelators (LMWG) in areas where alignment is key. PMID:25345918

  5. MUSE optical alignment procedure

    NASA Astrophysics Data System (ADS)

    Laurent, Florence; Renault, Edgard; Loupias, Magali; Kosmalski, Johan; Anwand, Heiko; Bacon, Roland; Boudon, Didier; Caillier, Patrick; Daguisé, Eric; Dubois, Jean-Pierre; Dupuy, Christophe; Kelz, Andreas; Lizon, Jean-Louis; Nicklas, Harald; Parès, Laurent; Remillieux, Alban; Seifert, Walter; Valentin, Hervé; Xu, Wenli

    2012-09-01

    MUSE (Multi Unit Spectroscopic Explorer) is a second generation VLT integral field spectrograph (1x1arcmin² Field of View) developed for the European Southern Observatory (ESO), operating in the visible wavelength range (0.465-0.93 μm). A consortium of seven institutes is currently assembling and testing MUSE in the Integration Hall of the Observatoire de Lyon for the Preliminary Acceptance in Europe, scheduled for 2013. MUSE is composed of several subsystems which are under the responsibility of each institute. The Fore Optics derotates and anamorphoses the image at the focal plane. A Splitting and Relay Optics feed the 24 identical Integral Field Units (IFU), that are mounted within a large monolithic instrument mechanical structure. Each IFU incorporates an image slicer, a fully refractive spectrograph with VPH-grating and a detector system connected to a global vacuum and cryogenic system. During 2011, all MUSE subsystems were integrated, aligned and tested independently in each institute. After validations, the systems were shipped to the P.I. institute at Lyon and were assembled in the Integration Hall This paper describes the end-to-end optical alignment procedure of the MUSE instrument. The design strategy, mixing an optical alignment by manufacturing (plug and play approach) and few adjustments on key components, is presented. We depict the alignment method for identifying the optical axis using several references located in pupil and image planes. All tools required to perform the global alignment between each subsystem are described. The success of this alignment approach is demonstrated by the good results for the MUSE image quality. MUSE commissioning at the VLT (Very Large Telescope) is planned for 2013.

  6. Segment alignment control system

    NASA Technical Reports Server (NTRS)

    Aubrun, JEAN-N.; Lorell, Ken R.

    1988-01-01

    The segmented primary mirror for the LDR will require a special segment alignment control system to precisely control the orientation of each of the segments so that the resulting composite reflector behaves like a monolith. The W.M. Keck Ten Meter Telescope will utilize a primary mirror made up of 36 actively controlled segments. Thus the primary mirror and its segment alignment control system are directly analogous to the LDR. The problems of controlling the segments in the face of disturbances and control/structures interaction, as analyzed for the TMT, are virtually identical to those for the LDR. The two systems are briefly compared.

  7. PILOT optical alignment

    NASA Astrophysics Data System (ADS)

    Longval, Y.; Mot, B.; Ade, P.; André, Y.; Aumont, J.; Baustista, L.; Bernard, J.-Ph.; Bray, N.; de Bernardis, P.; Boulade, O.; Bousquet, F.; Bouzit, M.; Buttice, V.; Caillat, A.; Charra, M.; Chaigneau, M.; Crane, B.; Crussaire, J.-P.; Douchin, F.; Doumayrou, E.; Dubois, J.-P.; Engel, C.; Etcheto, P.; Gélot, P.; Griffin, M.; Foenard, G.; Grabarnik, S.; Hargrave, P..; Hughes, A.; Laureijs, R.; Lepennec, Y.; Leriche, B.; Maestre, S.; Maffei, B.; Martignac, J.; Marty, C.; Marty, W.; Masi, S.; Mirc, F.; Misawa, R.; Montel, J.; Montier, L.; Narbonne, J.; Nicot, J.-M.; Pajot, F.; Parot, G.; Pérot, E.; Pimentao, J.; Pisano, G.; Ponthieu, N.; Ristorcelli, I.; Rodriguez, L.; Roudil, G.; Salatino, M.; Savini, G.; Simonella, O.; Saccoccio, M.; Tapie, P.; Tauber, J.; Torre, J.-P.; Tucker, C.

    2016-07-01

    PILOT is a balloon-borne astronomy experiment designed to study the polarization of dust emission in the diffuse interstellar medium in our Galaxy at wavelengths 240 μm with an angular resolution about two arcminutes. Pilot optics is composed an off-axis Gregorian type telescope and a refractive re-imager system. All optical elements, except the primary mirror, are in a cryostat cooled to 3K. We combined the optical, 3D dimensional measurement methods and thermo-elastic modeling to perform the optical alignment. The talk describes the system analysis, the alignment procedure, and finally the performances obtained during the first flight in September 2015.

  8. Curriculum Alignment: Establishing Coherence

    ERIC Educational Resources Information Center

    Gagné, Philippe; Dumont, Laurence; Brunet, Sabine; Boucher, Geneviève

    2013-01-01

    In this paper, we present a step-by-step guide to implement a curricular alignment project, directed at professional development and student support, and developed in a higher education French as a second language department. We outline best practices and preliminary results from our experience and provide ways to adapt our experience to other…

  9. Optically Aligned Drill Press

    NASA Technical Reports Server (NTRS)

    Adderholdt, Bruce M.

    1994-01-01

    Precise drill press equipped with rotary-indexing microscope. Microscope and drill exchange places when turret rotated. Microscope axis first aligned over future hole, then rotated out of way so drill axis assumes its precise position. New procedure takes less time to locate drilling positions and produces more accurate results. Apparatus adapted to such other machine tools as milling and measuring machines.

  10. Aligning brains and minds

    PubMed Central

    Tong, Frank

    2012-01-01

    In this issue of Neuron, Haxby and colleagues describe a new method for aligning functional brain activity patterns across participants. Their study demonstrates that objects are similarly represented across different brains, allowing for reliable classification of one person’s brain activity based on another’s. PMID:22017984

  11. Aligned-or Not?

    ERIC Educational Resources Information Center

    Roseman, Jo Ellen; Koppal, Mary

    2015-01-01

    When state leaders and national partners in the development of the Next Generation Science Standards met to consider implementation strategies, states and school districts wanted to know which materials were aligned to the new standards. The answer from the developers was short but not sweet: You won't find much now, and it's going to…

  12. MUSE alignment onto VLT

    NASA Astrophysics Data System (ADS)

    Laurent, Florence; Renault, Edgard; Boudon, Didier; Caillier, Patrick; Daguisé, Eric; Dupuy, Christophe; Jarno, Aurélien; Lizon, Jean-Louis; Migniau, Jean-Emmanuel; Nicklas, Harald; Piqueras, Laure

    2014-07-01

    MUSE (Multi Unit Spectroscopic Explorer) is a second generation Very Large Telescope (VLT) integral field spectrograph developed for the European Southern Observatory (ESO). It combines a 1' x 1' field of view sampled at 0.2 arcsec for its Wide Field Mode (WFM) and a 7.5"x7.5" field of view for its Narrow Field Mode (NFM). Both modes will operate with the improved spatial resolution provided by GALACSI (Ground Atmospheric Layer Adaptive Optics for Spectroscopic Imaging), that will use the VLT deformable secondary mirror and 4 Laser Guide Stars (LGS) foreseen in 2015. MUSE operates in the visible wavelength range (0.465-0.93 μm). A consortium of seven institutes is currently commissioning MUSE in the Very Large Telescope for the Preliminary Acceptance in Chile, scheduled for September, 2014. MUSE is composed of several subsystems which are under the responsibility of each institute. The Fore Optics derotates and anamorphoses the image at the focal plane. A Splitting and Relay Optics feed the 24 identical Integral Field Units (IFU), that are mounted within a large monolithic structure. Each IFU incorporates an image slicer, a fully refractive spectrograph with VPH-grating and a detector system connected to a global vacuum and cryogenic system. During 2012 and 2013, all MUSE subsystems were integrated, aligned and tested to the P.I. institute at Lyon. After successful PAE in September 2013, MUSE instrument was shipped to the Very Large Telescope in Chile where that was aligned and tested in ESO integration hall at Paranal. After, MUSE was directly transported, fully aligned and without any optomechanical dismounting, onto VLT telescope where the first light was overcame the 7th of February, 2014. This paper describes the alignment procedure of the whole MUSE instrument with respect to the Very Large Telescope (VLT). It describes how 6 tons could be move with accuracy better than 0.025mm and less than 0.25 arcmin in order to reach alignment requirements. The success

  13. Inflation by alignment

    SciTech Connect

    Burgess, C.P.; Roest, Diederik

    2015-06-08

    Pseudo-Goldstone bosons (pGBs) can provide technically natural inflatons, as has been comparatively well-explored in the simplest axion examples. Although inflationary success requires trans-Planckian decay constants, f≳M{sub p}, several mechanisms have been proposed to obtain this, relying on (mis-)alignments between potential and kinetic energies in multiple-field models. We extend these mechanisms to a broader class of inflationary models, including in particular the exponential potentials that arise for pGB potentials based on noncompact groups (and so which might apply to moduli in an extra-dimensional setting). The resulting potentials provide natural large-field inflationary models and can predict a larger primordial tensor signal than is true for simpler single-field versions of these models. In so doing we provide a unified treatment of several alignment mechanisms, showing how each emerges as a limit of the more general setup.

  14. Orbit IMU alignment: Error analysis

    NASA Technical Reports Server (NTRS)

    Corson, R. W.

    1980-01-01

    A comprehensive accuracy analysis of orbit inertial measurement unit (IMU) alignments using the shuttle star trackers was completed and the results are presented. Monte Carlo techniques were used in a computer simulation of the IMU alignment hardware and software systems to: (1) determine the expected Space Transportation System 1 Flight (STS-1) manual mode IMU alignment accuracy; (2) investigate the accuracy of alignments in later shuttle flights when the automatic mode of star acquisition may be used; and (3) verify that an analytical model previously used for estimating the alignment error is a valid model. The analysis results do not differ significantly from expectations. The standard deviation in the IMU alignment error for STS-1 alignments was determined to the 68 arc seconds per axis. This corresponds to a 99.7% probability that the magnitude of the total alignment error is less than 258 arc seconds.

  15. Nuclear reactor alignment plate configuration

    DOEpatents

    Altman, David A; Forsyth, David R; Smith, Richard E; Singleton, Norman R

    2014-01-28

    An alignment plate that is attached to a core barrel of a pressurized water reactor and fits within slots within a top plate of a lower core shroud and upper core plate to maintain lateral alignment of the reactor internals. The alignment plate is connected to the core barrel through two vertically-spaced dowel pins that extend from the outside surface of the core barrel through a reinforcement pad and into corresponding holes in the alignment plate. Additionally, threaded fasteners are inserted around the perimeter of the reinforcement pad and into the alignment plate to further secure the alignment plate to the core barrel. A fillet weld also is deposited around the perimeter of the reinforcement pad. To accomodate thermal growth between the alignment plate and the core barrel, a gap is left above, below and at both sides of one of the dowel pins in the alignment plate holes through with the dowel pins pass.

  16. Alignment reference device

    DOEpatents

    Patton, Gail Y.; Torgerson, Darrel D.

    1987-01-01

    An alignment reference device provides a collimated laser beam that minimizes angular deviations therein. A laser beam source outputs the beam into a single mode optical fiber. The output end of the optical fiber acts as a source of radiant energy and is positioned at the focal point of a lens system where the focal point is positioned within the lens. The output beam reflects off a mirror back to the lens that produces a collimated beam.

  17. Dynamic Alignment at SLS

    SciTech Connect

    Ruland, Robert E.

    2003-04-23

    The relative alignment of components in the storage ring of the Swiss Light Source (SLS) is guaranteed by mechanical means. The magnets are rigidly fixed to 48 girders by means of alignment rails with tolerances of less than {+-}15 {micro}m. The bending magnets, supported by 3 point ball bearings, overlap adjacent girders and thus establish virtual train links between the girders, located near the bending magnet centres. Keeping the distortion of the storage ring geometry within a tolerance of {+-}100 {micro}m in order to guarantee sufficient dynamic apertures, requires continuous monitoring and correction of the girder locations. Two monitoring systems for the horizontal and the vertical direction will be installed to measure displacements of the train link between girders, which are due to ground settings and temperature effects: The hydrostatic levelling system (HLS) gives an absolute vertical reference, while the horizontal positioning system (HPS), which employs low cost linear encoders with sub-micron resolution, measures relative horizontal movements. The girder mover system based on five DC motors per girder allows a dynamic realignment of the storage ring within a working window of more than {+-}1 mm for girder translations and {+-}1 mrad for rotations. We will describe both monitoring systems (HLS and HPS) as well as the applied correction scheme based on the girder movers. We also show simulations indicating that beam based girder alignment takes care of most of the static closed orbit correction.

  18. Alignment and alignment transition of bent core nematics

    NASA Astrophysics Data System (ADS)

    Elamain, Omaima; Hegde, Gurumurthy; Komitov, Lachezar

    2013-07-01

    We report on the alignment of nematics consisting of bimesogen bent core molecules of chlorine substituent of benzene derivative and their binary mixture with rod like nematics. It was found that the alignment layer made from polyimide material, which is usually used for promoting vertical (homeotropic) alignment of rod like nematics, promotes instead a planar alignment of the bent core nematic and its nematic mixtures. At higher concentration of the rod like nematic component in these mixtures, a temperature driven transition from vertical to planar alignment was found near the transition to isotropic phase.

  19. Polar cap arcs: Sun-aligned or cusp-aligned?

    NASA Astrophysics Data System (ADS)

    Zhang, Y.; Paxton, L. J.; Zhang, Qinghe; Xing, Zanyang

    2016-08-01

    Polar cap arcs are often called sun-aligned arcs. Satellite observations reveal that polar cap arcs join together at the cusp and are actually cusp aligned. Strong ionospheric plasma velocity shears, thus field aligned currents, were associated with polar arcs and they were likely caused by Kelvin-Helmholtz waves around the low-latitude magnetopause under a northward IMF Bz. The magnetic field lines around the magnetopause join together in the cusp region so are the field aligned currents and particle precipitation. This explains why polar arcs are cusp aligned.

  20. Improving ASM stepper alignment accuracy by alignment signal intensity simulation

    NASA Astrophysics Data System (ADS)

    Li, Gerald; Pushpala, Sagar M.; Bradford, Bradley; Peng, Zezhong; Gottipati, Mohan

    1993-08-01

    As photolithography technology advances into submicron regime, the requirement for alignment accuracy also becomes much tighter. The alignment accuracy is a function of the strength of the alignment signal. Therefore, a detailed alignment signal intensity simulation for 0.8 micrometers EPROM poly-1 layer on ASM stepper was done based on the process of record in the fab to reduce misalignment and improve die yield. Oxide thickness variation did not have significant impact on the alignment signal intensity. However, poly-1 thickness was the most important parameter to affect optical alignments. The real alignment intensity data versus resist thickness on production wafers was collected and it showed good agreement with the simulated results. Similar results were obtained for ONO dielectric layer at a different fab.

  1. AVID: A global alignment program.

    PubMed

    Bray, Nick; Dubchak, Inna; Pachter, Lior

    2003-01-01

    In this paper we describe a new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long. We present numerous applications of the method, ranging from the comparison of assemblies to alignment of large syntenic genomic regions and whole genome human/mouse alignments. We have also performed a quantitative comparison of AVID with other popular alignment tools. To this end, we have established a format for the representation of alignments and methods for their comparison. These formats and methods should be useful for future studies. The tools we have developed for the alignment comparisons, as well as the AVID program, are publicly available. See Web Site References section for AVID Web address and Web addresses for other programs discussed in this paper. PMID:12529311

  2. Engineering cell alignment in vitro.

    PubMed

    Li, Yuhui; Huang, Guoyou; Zhang, Xiaohui; Wang, Lin; Du, Yanan; Lu, Tian Jian; Xu, Feng

    2014-01-01

    Cell alignment plays a critical role in various cell behaviors including cytoskeleton reorganization, membrane protein relocation, nucleus gene expression, and ECM remodeling. Cell alignment is also known to exert significant effects on tissue regeneration (e.g., neuron) and modulate mechanical properties of tissues including skeleton, cardiac muscle and tendon. Therefore, it is essential to engineer cell alignment in vitro for biomechanics, cell biology, tissue engineering and regenerative medicine applications. With advances in nano- and micro-scale technologies, a variety of approaches have been developed to engineer cell alignment in vitro, including mechanical loading, topographical patterning, and surface chemical treatment. In this review, we first present alignments of various cell types and their functionality in different tissues in vivo including muscle and nerve tissues. Then, we provide an overview of recent approaches for engineering cell alignment in vitro. Finally, concluding remarks and perspectives are addressed for future improvement of engineering cell alignment.

  3. AVID: A global alignment program.

    PubMed

    Bray, Nick; Dubchak, Inna; Pachter, Lior

    2003-01-01

    In this paper we describe a new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long. We present numerous applications of the method, ranging from the comparison of assemblies to alignment of large syntenic genomic regions and whole genome human/mouse alignments. We have also performed a quantitative comparison of AVID with other popular alignment tools. To this end, we have established a format for the representation of alignments and methods for their comparison. These formats and methods should be useful for future studies. The tools we have developed for the alignment comparisons, as well as the AVID program, are publicly available. See Web Site References section for AVID Web address and Web addresses for other programs discussed in this paper.

  4. TSGC and JSC Alignment

    NASA Technical Reports Server (NTRS)

    Sanchez, Humberto

    2013-01-01

    NASA and the SGCs are, by design, intended to work closely together and have synergistic Vision, Mission, and Goals. The TSGC affiliates and JSC have been working together, but not always in a concise, coordinated, nor strategic manner. Today we have a couple of simple ideas to present about how TSGC and JSC have started to work together in a more concise, coordinated, and strategic manner, and how JSC and non-TSG Jurisdiction members have started to collaborate: Idea I: TSGC and JSC Technical Alignment Idea II: Concept of Clusters.

  5. CELT optics Alignment Procedure

    NASA Astrophysics Data System (ADS)

    Mast, Terry S.; Nelson, Jerry E.; Chanan, Gary A.; Noethe, Lothar

    2003-01-01

    The California Extremely Large Telescope (CELT) is a project to build a 30-meter diameter telescope for research in astronomy at visible and infrared wavelengths. The current optical design calls for a primary, secondary, and tertiary mirror with Ritchey-Chretién foci at two Nasmyth platforms. The primary mirror is a mosaic of 1080 actively-stabilized hexagonal segments. This paper summarizes a CELT report that describes a step-by-step procedure for aligning the many degrees of freedom of the CELT optics.

  6. Overcoming low-alignment signal contrast induced alignment failure by alignment signal enhancement

    NASA Astrophysics Data System (ADS)

    Lee, Byeong Soo; Kim, Young Ha; Hwang, Hyunwoo; Lee, Jeongjin; Kong, Jeong Heung; Kang, Young Seog; Paarhuis, Bart; Kok, Haico; de Graaf, Roelof; Weichselbaum, Stefan; Droste, Richard; Mason, Christopher; Aarts, Igor; de Boeij, Wim P.

    2016-03-01

    Overlay is one of the key factors which enables optical lithography extension to 1X node DRAM manufacturing. It is natural that accurate wafer alignment is a prerequisite for good device overlay. However, alignment failures or misalignments are commonly observed in a fab. There are many factors which could induce alignment problems. Low alignment signal contrast is one of the main issues. Alignment signal contrast can be degraded by opaque stack materials or by alignment mark degradation due to processes like CMP. This issue can be compounded by mark sub-segmentation from design rules in combination with double or quadruple spacer process. Alignment signal contrast can be improved by applying new material or process optimization, which sometimes lead to the addition of another process-step with higher costs. If we can amplify the signal components containing the position information and reduce other unwanted signal and background contributions then we can improve alignment performance without process change. In this paper we use ASML's new alignment sensor (as was introduced and released on the NXT:1980Di) and sample wafers with special stacks which can induce poor alignment signal to demonstrate alignment and overlay improvement.

  7. Pareto optimal pairwise sequence alignment.

    PubMed

    DeRonne, Kevin W; Karypis, George

    2013-01-01

    Sequence alignment using evolutionary profiles is a commonly employed tool when investigating a protein. Many profile-profile scoring functions have been developed for use in such alignments, but there has not yet been a comprehensive study of Pareto optimal pairwise alignments for combining multiple such functions. We show that the problem of generating Pareto optimal pairwise alignments has an optimal substructure property, and develop an efficient algorithm for generating Pareto optimal frontiers of pairwise alignments. All possible sets of two, three, and four profile scoring functions are used from a pool of 11 functions and applied to 588 pairs of proteins in the ce_ref data set. The performance of the best objective combinations on ce_ref is also evaluated on an independent set of 913 protein pairs extracted from the BAliBASE RV11 data set. Our dynamic-programming-based heuristic approach produces approximated Pareto optimal frontiers of pairwise alignments that contain comparable alignments to those on the exact frontier, but on average in less than 1/58th the time in the case of four objectives. Our results show that the Pareto frontiers contain alignments whose quality is better than the alignments obtained by single objectives. However, the task of identifying a single high-quality alignment among those in the Pareto frontier remains challenging.

  8. Nanoscale optical and electrical characterization of horizontally aligned single-walled carbon nanotubes.

    PubMed

    Rodriguez, Raul D; Toader, Marius; Hermann, Sascha; Sheremet, Evgeniya; Müller, Susanne; Gordan, Ovidiu D; Yu, Haibo; Schulz, Stefan E; Hietschold, Michael; Zahn, Dietrich Rt

    2012-01-01

    During the recent years, a significant amount of research has been performed on single-walled carbon nanotubes (SWCNTs) as a channel material in thin-film transistors (Pham et al. IEEE Trans Nanotechnol 11:44-50, 2012). This has prompted the application of advanced characterization techniques based on combined atomic force microscopy (AFM) and Raman spectroscopy studies (Mureau et al. Electrophoresis 29:2266-2271, 2008). In this context, we use confocal Raman microscopy and current sensing atomic force microscopy (CS-AFM) to study phonons and the electronic transport in semiconducting SWCNTs, which were aligned between palladium electrodes using dielectrophoresis (Kuzyk Electrophoresis 32:2307-2313, 2011). Raman imaging was performed in the region around the electrodes on the suspended CNTs using several laser excitation wavelengths. Analysis of the G+/G- splitting in the Raman spectra (Sgobba and Guldi Chem Soc Rev 38:165-184, 2009) shows CNT diameters of 2.5 ± 0.3 nm. Neither surface modification nor increase in defect density or stress at the CNT-electrode contact could be detected, but rather a shift in G+ and G- peak positions in regions with high CNT density between the electrodes. Simultaneous topographical and electrical characterization of the CNT transistor by CS-AFM confirms the presence of CNT bundles having a stable electrical contact with the transistor electrodes. For a similar load force, reproducible current-voltage (I/V) curves for the same CNT regions verify the stability of the electrical contact between the nanotube and the electrodes as well as the nanotube and the AFM tip over different experimental sessions using different AFM tips. Strong variations observed in the I/V response at different regions of the CNT transistor are discussed.

  9. Nova laser alignment control system

    SciTech Connect

    Van Arsdall, P.J.; Holloway, F.W.; McGuigan, D.L.; Shelton, R.T.

    1984-03-29

    Alignment of the Nova laser requires control of hundreds of optical components in the ten beam paths. Extensive application of computer technology makes daily alignment practical. The control system is designed in a manner which provides both centralized and local manual operator controls integrated with automatic closed loop alignment. Menudriven operator consoles using high resolution color graphics displays overlaid with transport touch panels allow laser personnel to interact efficiently with the computer system. Automatic alignment is accomplished by using image analysis techniques to determine beam references points from video images acquired along the laser chain. A major goal of the design is to contribute substantially to rapid experimental turnaround and consistent alignment results. This paper describes the computer-based control structure and the software methods developed for aligning this large laser system.

  10. Dust alignment in astrophysical environments

    NASA Astrophysics Data System (ADS)

    Lazarian, Alex; Thiem Hoang, Chi

    Dust is known to be aligned in interstellar medium and the arising polarization is extensively used to trace magnetic fields. What process aligns dust grains was one of the most long-standing problems of astrophysics in spite of the persistent efforts to solve it. For years the Davis-Greenstein paramagnetic alignment was the primary candidate for explaining grain alignment. However, the situation is different now and the most promising mechanism is associated with radiative torques (RATs) acting on irregular grains. I shall present the analytical theory of RAT alignment, discuss the observational tests that support this theory. I shall also discuss in what situations we expect to see the dominance of paramagnetic alignment.

  11. Nuclear reactor internals alignment configuration

    DOEpatents

    Gilmore, Charles B.; Singleton, Norman R.

    2009-11-10

    An alignment system that employs jacking block assemblies and alignment posts around the periphery of the top plate of a nuclear reactor lower internals core shroud to align an upper core plate with the lower internals and the core shroud with the core barrel. The distal ends of the alignment posts are chamfered and are closely received within notches machined in the upper core plate at spaced locations around the outer circumference of the upper core plate. The jacking block assemblies are used to center the core shroud in the core barrel and the alignment posts assure the proper orientation of the upper core plate. The alignment posts may alternately be formed in the upper core plate and the notches may be formed in top plate.

  12. Onorbit IMU alignment error budget

    NASA Technical Reports Server (NTRS)

    Corson, R. W.

    1980-01-01

    The Star Tracker, Crew Optical Alignment Sight (COAS), and Inertial Measurement Unit (IMU) from a complex navigation system with a multitude of error sources were combined. A complete list of the system errors is presented. The errors were combined in a rational way to yield an estimate of the IMU alignment accuracy for STS-1. The expected standard deviation in the IMU alignment error for STS-1 type alignments was determined to be 72 arc seconds per axis for star tracker alignments and 188 arc seconds per axis for COAS alignments. These estimates are based on current knowledge of the star tracker, COAS, IMU, and navigation base error specifications, and were partially verified by preliminary Monte Carlo analysis.

  13. [Alignment of malpositioned canines].

    PubMed

    Wagner, L

    1991-03-01

    This article presents a system for aligning impacted canines. The base of this system is the lingual arch, a rigid reaction unit of four teeth, molars and premolars. From this base unit an impacted canine can be extruded, moved distally, jumped over the occlusion and derotated by segment arches, coil springs and elastic ligatures. The efficiency of this appliance is due to the elimination of undesired reactive forces, the safe moving of teeth, the possibility of an exact force application and the simple manipulation; also the esthetic inconvenience is minimal. All this results in a better prognosis and an essentially shorter treatment time. This appliance can be used in the upper and the lower jaw. Schematic drawings and clinical examples demonstrate this method.

  14. Lunar Alignments - Identification and Analysis

    NASA Astrophysics Data System (ADS)

    González-García, A. César

    Lunar alignments are difficult to establish given the apparent lack of written accounts clearly pointing toward lunar alignments for individual temples. While some individual cases are reviewed and highlighted, the weight of the proof must fall on statistical sampling. Some definitions for the lunar alignments are provided in order to clarify the targets, and thus, some new tools are provided to try to test the lunar hypothesis in several cases, especially in megalithic astronomy.

  15. Lexical alignment in triadic communication.

    PubMed

    Foltz, Anouschka; Gaspers, Judith; Thiele, Kristina; Stenneken, Prisca; Cimiano, Philipp

    2015-01-01

    Lexical alignment refers to the adoption of one's interlocutor's lexical items. Accounts of the mechanisms underlying such lexical alignment differ (among other aspects) in the role assigned to addressee-centered behavior. In this study, we used a triadic communicative situation to test which factors may modulate the extent to which participants' lexical alignment reflects addressee-centered behavior. Pairs of naïve participants played a picture matching game and received information about the order in which pictures were to be matched from a voice over headphones. On critical trials, participants did or did not hear a name for the picture to be matched next over headphones. Importantly, when the voice over headphones provided a name, it did not match the name that the interlocutor had previously used to describe the object. Participants overwhelmingly used the word that the voice over headphones provided. This result points to non-addressee-centered behavior and is discussed in terms of disrupting alignment with the interlocutor as well as in terms of establishing alignment with the voice over headphones. In addition, the type of picture (line drawing vs. tangram shape) independently modulated lexical alignment, such that participants showed more lexical alignment to their interlocutor for (more ambiguous) tangram shapes compared to line drawings. Overall, the results point to a rather large role for non-addressee-centered behavior during lexical alignment.

  16. Drive alignment pays maintenance dividends

    SciTech Connect

    Fedder, R.

    2008-12-15

    Proper alignment of the motor and gear drive on conveying and processing equipment will result in longer bearing and coupling life, along with lower maintenance costs. Selecting an alignment free drive package instead of a traditional foot mounted drive and motor is a major advancement toward these goals. 4 photos.

  17. CATO: The Clone Alignment Tool.

    PubMed

    Henstock, Peter V; LaPan, Peter

    2016-01-01

    High-throughput cloning efforts produce large numbers of sequences that need to be aligned, edited, compared with reference sequences, and organized as files and selected clones. Different pieces of software are typically required to perform each of these tasks. We have designed a single piece of software, CATO, the Clone Alignment Tool, that allows a user to align, evaluate, edit, and select clone sequences based on comparisons to reference sequences. The input and output are designed to be compatible with standard data formats, and thus suitable for integration into a clone processing pipeline. CATO provides both sequence alignment and visualizations to facilitate the analysis of cloning experiments. The alignment algorithm matches each of the relevant candidate sequences against each reference sequence. The visualization portion displays three levels of matching: 1) a top-level summary of the top candidate sequences aligned to each reference sequence, 2) a focused alignment view with the nucleotides of matched sequences displayed against one reference sequence, and 3) a pair-wise alignment of a single reference and candidate sequence pair. Users can select the minimum matching criteria for valid clones, edit or swap reference sequences, and export the results to a summary file as part of the high-throughput cloning workflow.

  18. Transformation and Alignment in Similarity

    ERIC Educational Resources Information Center

    Hodgetts, Carl J.; Hahn, Ulrike; Chater, Nick

    2009-01-01

    This paper contrasts two structural accounts of psychological similarity: structural alignment (SA) and Representational Distortion (RD). SA proposes that similarity is determined by how readily the structures of two objects can be brought into alignment; RD measures similarity by the complexity of the transformation that "distorts" one…

  19. CATO: The Clone Alignment Tool.

    PubMed

    Henstock, Peter V; LaPan, Peter

    2016-01-01

    High-throughput cloning efforts produce large numbers of sequences that need to be aligned, edited, compared with reference sequences, and organized as files and selected clones. Different pieces of software are typically required to perform each of these tasks. We have designed a single piece of software, CATO, the Clone Alignment Tool, that allows a user to align, evaluate, edit, and select clone sequences based on comparisons to reference sequences. The input and output are designed to be compatible with standard data formats, and thus suitable for integration into a clone processing pipeline. CATO provides both sequence alignment and visualizations to facilitate the analysis of cloning experiments. The alignment algorithm matches each of the relevant candidate sequences against each reference sequence. The visualization portion displays three levels of matching: 1) a top-level summary of the top candidate sequences aligned to each reference sequence, 2) a focused alignment view with the nucleotides of matched sequences displayed against one reference sequence, and 3) a pair-wise alignment of a single reference and candidate sequence pair. Users can select the minimum matching criteria for valid clones, edit or swap reference sequences, and export the results to a summary file as part of the high-throughput cloning workflow. PMID:27459605

  20. CATO: The Clone Alignment Tool

    PubMed Central

    Henstock, Peter V.; LaPan, Peter

    2016-01-01

    High-throughput cloning efforts produce large numbers of sequences that need to be aligned, edited, compared with reference sequences, and organized as files and selected clones. Different pieces of software are typically required to perform each of these tasks. We have designed a single piece of software, CATO, the Clone Alignment Tool, that allows a user to align, evaluate, edit, and select clone sequences based on comparisons to reference sequences. The input and output are designed to be compatible with standard data formats, and thus suitable for integration into a clone processing pipeline. CATO provides both sequence alignment and visualizations to facilitate the analysis of cloning experiments. The alignment algorithm matches each of the relevant candidate sequences against each reference sequence. The visualization portion displays three levels of matching: 1) a top-level summary of the top candidate sequences aligned to each reference sequence, 2) a focused alignment view with the nucleotides of matched sequences displayed against one reference sequence, and 3) a pair-wise alignment of a single reference and candidate sequence pair. Users can select the minimum matching criteria for valid clones, edit or swap reference sequences, and export the results to a summary file as part of the high-throughput cloning workflow. PMID:27459605

  1. Lexical alignment in triadic communication

    PubMed Central

    Foltz, Anouschka; Gaspers, Judith; Thiele, Kristina; Stenneken, Prisca; Cimiano, Philipp

    2015-01-01

    Lexical alignment refers to the adoption of one’s interlocutor’s lexical items. Accounts of the mechanisms underlying such lexical alignment differ (among other aspects) in the role assigned to addressee-centered behavior. In this study, we used a triadic communicative situation to test which factors may modulate the extent to which participants’ lexical alignment reflects addressee-centered behavior. Pairs of naïve participants played a picture matching game and received information about the order in which pictures were to be matched from a voice over headphones. On critical trials, participants did or did not hear a name for the picture to be matched next over headphones. Importantly, when the voice over headphones provided a name, it did not match the name that the interlocutor had previously used to describe the object. Participants overwhelmingly used the word that the voice over headphones provided. This result points to non-addressee-centered behavior and is discussed in terms of disrupting alignment with the interlocutor as well as in terms of establishing alignment with the voice over headphones. In addition, the type of picture (line drawing vs. tangram shape) independently modulated lexical alignment, such that participants showed more lexical alignment to their interlocutor for (more ambiguous) tangram shapes compared to line drawings. Overall, the results point to a rather large role for non-addressee-centered behavior during lexical alignment. PMID:25762955

  2. Curriculum Alignment: Theory to Practice.

    ERIC Educational Resources Information Center

    Leitzel, Thomas C.; Vogler, Daniel E.

    Curriculum alignment is the conscious congruence of three educational elements: curriculum, instruction, and assessment. Alignment is rooted in the belief that instructional plans are established through outcomes-based content goals and the goal of assuring that delivery and assessment are congruent. Platform unity, based on the Principles of…

  3. Well-pump alignment system

    DOEpatents

    Drumheller, Douglas S.

    1998-01-01

    An improved well-pump for geothermal wells, an alignment system for a well-pump, and to a method for aligning a rotor and stator within a well-pump, wherein the well-pump has a whistle assembly formed at a bottom portion thereof, such that variations in the frequency of the whistle, indicating misalignment, may be monitored during pumping.

  4. Assembly, physics, and application of highly electronic-type purified semiconducting carbon nanotubes in aligned array field effect transistors and photovoltaics

    NASA Astrophysics Data System (ADS)

    Arnold, Michael

    2015-03-01

    Recent advances in (1) achieving highly monodisperse semiconducting carbon nanotubes without problematic metallic nanotubes and (2) depositing these nanotubes into useful, organized arrays and assemblies on substrates have created new opportunities for studying the physics of these one-dimensional conductors and for applying them in electronics and photonics technologies. In this talk, I will present on two topics that are along these lines. In the first, we have pioneered a scalable approach for depositing aligned arrays of ultrahigh purity semiconducting SWCNTs (prepared using polyfluorene-derivatives) called floating evaporative self-assembly (FESA). FESA is exploited to create FETs with exceptionally high combined on-conductance and on-off ratio of 261 μS/ μm and 2 x105, respectively, for a channel length of 240 nm. This is 1400 x greater on-off ratio than SWCNT FETs fabricated by other methods, at comparable on-conductance per width of 250 μS/ μm, and 30-100 x greater on-conductance per width, at comparable on-off ratio of 105-107. In the second, we have discovered how to efficiently harvest photons using semiconducting SWCNTs by driving the dissociation of excitons using donor/acceptor heterojunctions. The flow of energy in SWCNT films occurs across a complex energy landscape, temporally resolved using two-dimensional white light ultrafast spectroscopy. We have demonstrated simple solar cells driven by SWCNT excitons, based on bilayers between C60 and ultrathin (5 nm) films of SWCNTs that achieve a 1% solar power conversion efficiency (7% at the bandgap). High internal quantum efficiency indicates that future blended or multijunction cells exploiting multiple layers will be many times more efficient.

  5. Botulinum alignment for congenital esotropia.

    PubMed Central

    Ing, M R

    1992-01-01

    This is the first report of a group of patients with congenital esotropia examined for motor and sensory evidence of binocularity a minimum of 3 years after alignment by botulinum. Evidence for binocularity was clearly present in approximately one half of the patients. Lag time to satisfactory alignment was at least 1 month (average, 5 months) following the initial botulinum injection. The results must be considered preliminary. However, when these results are compared with those of patients with congenital esotropia aligned by incisional surgery by age 2 years and examined with the same testing devices by this same investigator, botulinum alignment appears to be less effective than surgical alignment in establishing evidence for binocularity (P < 0.005). PMID:1494828

  6. Space Mirror Alignment System

    NASA Technical Reports Server (NTRS)

    Jau, Bruno M.; McKinney, Colin; Smythe, Robert F.; Palmer, Dean L.

    2011-01-01

    An optical alignment mirror mechanism (AMM) has been developed with angular positioning accuracy of +/-0.2 arcsec. This requires the mirror s linear positioning actuators to have positioning resolutions of +/-112 nm to enable the mirror to meet the angular tip/tilt accuracy requirement. Demonstrated capabilities are 0.1 arc-sec angular mirror positioning accuracy, which translates into linear positioning resolutions at the actuator of 50 nm. The mechanism consists of a structure with sets of cross-directional flexures that enable the mirror s tip and tilt motion, a mirror with its kinematic mount, and two linear actuators. An actuator comprises a brushless DC motor, a linear ball screw, and a piezoelectric brake that holds the mirror s position while the unit is unpowered. An interferometric linear position sensor senses the actuator s position. The AMMs were developed for an Astrometric Beam Combiner (ABC) optical bench, which is part of an interferometer development. Custom electronics were also developed to accommodate the presence of multiple AMMs within the ABC and provide a compact, all-in-one solution to power and control the AMMs.

  7. Magnetic alignment and the Poisson alignment reference system

    NASA Astrophysics Data System (ADS)

    Griffith, L. V.; Schenz, R. F.; Sommargren, G. E.

    1990-08-01

    Three distinct metrological operations are necessary to align a free-electron laser (FEL): the magnetic axis must be located, a straight line reference (SLR) must be generated, and the magnetic axis must be related to the SLR. This article begins with a review of the motivation for developing an alignment system that will assure better than 100-μm accuracy in the alignment of the magnetic axis throughout an FEL. The 100-μm accuracy is an error circle about an ideal axis for 300 m or more. The article describes techniques for identifying the magnetic axes of solenoids, quadrupoles, and wiggler poles. Propagation of a laser beam is described to the extent of revealing sources of nonlinearity in the beam. Development of a straight-line reference based on the Poisson line, a diffraction effect, is described in detail. Spheres in a large-diameter laser beam create Poisson lines and thus provide a necessary mechanism for gauging between the magnetic axis and the SLR. Procedures for installing FEL components and calibrating alignment fiducials to the magnetic axes of the components are also described. The Poisson alignment reference system should be accurate to 25 μm over 300 m, which is believed to be a factor-of-4 improvement over earlier techniques. An error budget shows that only 25% of the total budgeted tolerance is used for the alignment reference system, so the remaining tolerances should fall within the allowable range for FEL alignment.

  8. Alignment technology for backside integration

    NASA Astrophysics Data System (ADS)

    Bauer, J.; Kulse, P.; Haak, U.; Old, G.; Scheuring, G.; Döbereiner, St.; Hillmann, F.; Brück, H.-J.; Kaynak, M.; Ehwald, K.-E.; Marschmeyer, St.; Birkholz, M.; Schulz, K.

    2011-03-01

    This paper presents a backside-to-frontside alignment technique for the backside processing of Si wafers. Integrated MEMS components like BiCMOS-embedded RF-MEMS switches require accurate (1-2μm) alignment. We demonstrate an alignment technique providing overlay values of less than 500 nm by using a backside alignment layer. The approach is enabled by a new non-contact wafer pre-alignment system of the Nikon Scanner S207D allowing precise loading (<5μm) of the wafer onto the exposure stage. Before starting the back-side MEMS process, the misalignment between frontside devices and backside alignment layer has to be measured. The alignment errors are applied as lithography overlay corrections to the backside MEMS process. For the specific application of deep Si etching (Bosch process), moreover, one has to consider the etch profile angle deviation across the wafer (tilting), which turned out in our experiments to amount up to 8 μm. During initial experiments with a Nikon i-line stepper NSR-2205 i- 11D the overlay has been corrected by the stepper offset parameters. These parameters have been obtained by summing up both the wafer and intra-field scaling errors caused by deep Si etching and backside-to-frontside alignment errors. Misalignments and tilting errors were all measured with a MueTec MT 3000 IR optical metrology system using overlay marks. The developed alignment technique is applied to BiCMOS-embedded MEMS devices, i.e. mm-wave RF switches and a viscosity sensor chip based on the IHP's high-speed SiGe technology. It turned out to be very promising for backside processed MEMS components with critical alignment requirements.

  9. Testing the tidal alignment model of galaxy intrinsic alignment

    SciTech Connect

    Blazek, Jonathan; Seljak, Uroš; McQuinn, Matthew E-mail: mmcquinn@berkeley.edu

    2011-05-01

    Weak gravitational lensing has become a powerful probe of large-scale structure and cosmological parameters. Precision weak lensing measurements require an understanding of the intrinsic alignment of galaxy ellipticities, which can in turn inform models of galaxy formation. It is hypothesized that elliptical galaxies align with the background tidal field and that this alignment mechanism dominates the correlation between ellipticities on cosmological scales (in the absence of lensing). We use recent large-scale structure measurements from the Sloan Digital Sky Survey to test this picture with several statistics: (1) the correlation between ellipticity and galaxy overdensity, w{sub g+}; (2) the intrinsic alignment auto-correlation functions; (3) the correlation functions of curl-free, E, and divergence-free, B, modes, the latter of which is zero in the linear tidal alignment theory; (4) the alignment correlation function, w{sub g}(r{sub p},θ), a recently developed statistic that generalizes the galaxy correlation function to account for the angle between the galaxy separation vector and the principle axis of ellipticity. We show that recent measurements are largely consistent with the tidal alignment model and discuss dependence on galaxy luminosity. In addition, we show that at linear order the tidal alignment model predicts that the angular dependence of w{sub g}(r{sub p},θ) is simply w{sub g+}(r{sub p})cos (2θ) and that this dependence is consistent with recent measurements. We also study how stochastic nonlinear contributions to galaxy ellipticity impact these statistics. We find that a significant fraction of the observed LRG ellipticity can be explained by alignment with the tidal field on scales ∼> 10 \\hMpc. These considerations are relevant to galaxy formation and evolution.

  10. CMP-compatible alignment strategy

    NASA Astrophysics Data System (ADS)

    Rouchouze, Eric; Darracq, Jean-Michel; Gemen, Jack

    1997-07-01

    As semiconductor technology continues its way towards smaller geometries, CMP has gained acceptance as the planarization technique for interconnect layers. Its benefits are well known, especially in terms of imaging. However, one of its major drawbacks is to make difficult the alignment of interconnect layers, since a planarized alignment mark is less visible for the stepper's alignment system. Usual workarounds include the clearing of process layers from the alignment mark before exposing the product layer. Although these workarounds provide a temporary solution, they are too costly to be viable in a mass production environment. In this experiment, a non-zero alignment strategy using new mark designs has been tested on the backend layers of a 0.35 micrometers CMOS process. New mark designs have been evaluated, where the space part of the gratings has been filled with 'segments' of various width, the purpose being to minimize the planarization effect of the metallization process. For the selection of the best mark design, several criteria have been taken into account: the stepper's built-in alignment diagnostic software provides information on the quality of the alignment signal. The most important criterion is the product overlay measurement and its repeatability. Marks cross sections using a FIB/SEM tool give indications on the mark profile after metal deposition.

  11. Galaxy Alignments: Theory, Modelling & Simulations

    NASA Astrophysics Data System (ADS)

    Kiessling, Alina; Cacciato, Marcello; Joachimi, Benjamin; Kirk, Donnacha; Kitching, Thomas D.; Leonard, Adrienne; Mandelbaum, Rachel; Schäfer, Björn Malte; Sifón, Cristóbal; Brown, Michael L.; Rassat, Anais

    2015-11-01

    The shapes of galaxies are not randomly oriented on the sky. During the galaxy formation and evolution process, environment has a strong influence, as tidal gravitational fields in the large-scale structure tend to align nearby galaxies. Additionally, events such as galaxy mergers affect the relative alignments of both the shapes and angular momenta of galaxies throughout their history. These "intrinsic galaxy alignments" are known to exist, but are still poorly understood. This review will offer a pedagogical introduction to the current theories that describe intrinsic galaxy alignments, including the apparent difference in intrinsic alignment between early- and late-type galaxies and the latest efforts to model them analytically. It will then describe the ongoing efforts to simulate intrinsic alignments using both N-body and hydrodynamic simulations. Due to the relative youth of this field, there is still much to be done to understand intrinsic galaxy alignments and this review summarises the current state of the field, providing a solid basis for future work.

  12. Advanced Mask Aligner Lithography (AMALITH)

    NASA Astrophysics Data System (ADS)

    Voelkel, Reinhard; Vogler, Uwe; Bramati, Arianna

    2015-03-01

    Mask aligner lithography is very attractive for less-critical lithography layers and is widely used for LED, display, CMOS image sensor, micro-fluidics and MEMS manufacturing. Mask aligner lithography is also a preferred choice the semiconductor back-end for 3D-IC, TSV interconnects, advanced packaging (AdP) and wafer-level-packaging (WLP). Mask aligner lithography is a mature technique based on shadow printing and has not much changed since the 1980s. In shadow printing lithography a geometric pattern is transferred by free-space propagation from a photomask to a photosensitive layer on a wafer. The inherent simplicity of the pattern transfer offers ease of operation, low maintenance, moderate capital expenditure, high wafers-per-hour (WPH) throughput, and attractive cost-of-ownership (COO). Advanced mask aligner lithography (AMALITH) comprises different measures to improve shadow printing lithography beyond current limits. The key enabling technology for AMALITH is a novel light integrator systems, referred to as MO Exposure Optics® (MOEO). MOEO allows to fully control and shape the properties of the illumination light in a mask aligner. Full control is the base for accurate simulation and optimization of the shadow printing process (computational lithography). Now photolithography enhancement techniques like customized illumination, optical proximity correction (OPC), phase masks (AAPSM), half-tone lithography and Talbot lithography could be used in mask aligner lithography. We summarize the recent progress in advanced mask aligner lithography (AMALITH) and discuss possible measures to further improve shadow printing lithography.

  13. Aligning for Innovation - Alignment Strategy to Drive Innovation

    NASA Technical Reports Server (NTRS)

    Johnson, Hurel; Teltschik, David; Bussey, Horace, Jr.; Moy, James

    2010-01-01

    With the sudden need for innovation that will help the country achieve its long-term space exploration objectives, the question of whether NASA is aligned effectively to drive the innovation that it so desperately needs to take space exploration to the next level should be entertained. Authors such as Robert Kaplan and David North have noted that companies that use a formal system for implementing strategy consistently outperform their peers. They have outlined a six-stage management systems model for implementing strategy, which includes the aligning of the organization towards its objectives. This involves the alignment of the organization from the top down. This presentation will explore the impacts of existing U.S. industrial policy on technological innovation; assess the current NASA organizational alignment and its impacts on driving technological innovation; and finally suggest an alternative approach that may drive the innovation needed to take the world to the next level of space exploration, with NASA truly leading the way.

  14. Fusion bonding and alignment fixture

    DOEpatents

    Ackler, Harold D.; Swierkowski, Stefan P.; Tarte, Lisa A.; Hicks, Randall K.

    2000-01-01

    An improved vacuum fusion bonding structure and process for aligned bonding of large area glass plates, patterned with microchannels and access holes and slots, for elevated glass fusion temperatures. Vacuum pumpout of all the components is through the bottom platform which yields an untouched, defect free top surface which greatly improves optical access through this smooth surface. Also, a completely non-adherent interlayer, such as graphite, with alignment and location features is located between the main steel platform and the glass plate pair, which makes large improvements in quality, yield, and ease of use, and enables aligned bonding of very large glass structures.

  15. Multiple sequence alignment with DIALIGN.

    PubMed

    Morgenstern, Burkhard

    2014-01-01

    DIALIGN is a software tool for multiple sequence alignment by combining global and local alignment features. It composes multiple alignments from local pairwise sequence similarities. This approach is particularly useful to discover conserved functional regions in sequences that share only local homologies but are otherwise unrelated. An anchoring option allows to use external information and expert knowledge in addition to primary-sequence similarity alone. The latest version of DIALIGN optionally uses matches to the PFAM database to detect weak homologies. Various versions of the program are available through Göttingen Bioinformatics Compute Server (GOBICS) at http://www.gobics.de/department/software.

  16. Magnetic axis alignment and the Poisson alignment reference system

    NASA Astrophysics Data System (ADS)

    Griffith, Lee V.; Schenz, Richard F.; Sommargren, Gary E.

    1989-01-01

    Three distinct metrological operations are necessary to align a free-electron laser (FEL): the magnetic axis must be located, a straight line reference (SLR) must be generated, and the magnetic axis must be related to the SLR. This paper begins with a review of the motivation for developing an alignment system that will assure better than 100 micrometer accuracy in the alignment of the magnetic axis throughout an FEL. The paper describes techniques for identifying the magnetic axis of solenoids, quadrupoles, and wiggler poles. Propagation of a laser beam is described to the extent of revealing sources of nonlinearity in the beam. Development and use of the Poisson line, a diffraction effect, is described in detail. Spheres in a large-diameter laser beam create Poisson lines and thus provide a necessary mechanism for gauging between the magnetic axis and the SLR. Procedures for installing FEL components and calibrating alignment fiducials to the magnetic axes of the components are also described. An error budget shows that the Poisson alignment reference system will make it possible to meet the alignment tolerances for an FEL.

  17. Visual attitude orientation and alignment system

    NASA Technical Reports Server (NTRS)

    Beam, R. A.; Morris, D. B.

    1967-01-01

    Active vehicle optical alignment aid and a passive vehicle three-dimensional alignment target ensure proper orientation and alignment plus control of the closure range and rate between two bodies, one in controlled motion and one at rest.

  18. Laser beam alignment apparatus and method

    DOEpatents

    Gruhn, Charles R.; Hammond, Robert B.

    1981-01-01

    The disclosure relates to an apparatus and method for laser beam alignment. Thermoelectric properties of a disc in a laser beam path are used to provide an indication of beam alignment and/or automatic laser alignment.

  19. Theory of grain alignment in molecular clouds

    NASA Technical Reports Server (NTRS)

    Roberge, Wayne G.

    1993-01-01

    Research accomplishments are presented and include the following: (1) mathematical theory of grain alignment; (2) super-paramagnetic alignment of molecular cloud grains; and (3) theory of grain alignment by ambipolar diffusion.

  20. Laser beam alignment apparatus and method

    DOEpatents

    Gruhn, C.R.; Hammond, R.B.

    The disclosure related to an apparatus and method for laser beam alignment. Thermoelectric properties of a disc in a laser beam path are used to provide an indication of beam alignment and/or automatic laser alignment.

  1. Protein structure alignment beyond spatial proximity.

    PubMed

    Wang, Sheng; Ma, Jianzhu; Peng, Jian; Xu, Jinbo

    2013-01-01

    Protein structure alignment is a fundamental problem in computational structure biology. Many programs have been developed for automatic protein structure alignment, but most of them align two protein structures purely based upon geometric similarity without considering evolutionary and functional relationship. As such, these programs may generate structure alignments which are not very biologically meaningful from the evolutionary perspective. This paper presents a novel method DeepAlign for automatic pairwise protein structure alignment. DeepAlign aligns two protein structures using not only spatial proximity of equivalent residues (after rigid-body superposition), but also evolutionary relationship and hydrogen-bonding similarity. Experimental results show that DeepAlign can generate structure alignments much more consistent with manually-curated alignments than other automatic tools especially when proteins under consideration are remote homologs. These results imply that in addition to geometric similarity, evolutionary information and hydrogen-bonding similarity are essential to aligning two protein structures.

  2. Fixture for aligning motor assembly

    DOEpatents

    Shervington, Roger M.; Vaghani, Vallabh V.; Vanek, Laurence D.; Christensen, Scott A.

    2009-12-08

    An alignment fixture includes a rotor fixture, a stator fixture and a sensor system which measures a rotational displacement therebetween. The fixture precisely measures rotation of a generator stator assembly away from a NULL position referenced by a unique reference spline on the rotor shaft. By providing an adjustable location of the stator assembly within the housing, the magnetic axes within each generator shall be aligned to a predetermined and controlled tolerance between the generator interface mounting pin and the reference spline on the rotor shaft. Once magnetically aligned, each generator is essentially a line replaceable unit which may be readily mounted to any input of a multi-generator gearbox assembly with the assurance that the magnetic alignment will be within a predetermined tolerance.

  3. Well-pump alignment system

    DOEpatents

    Drumheller, D.S.

    1998-10-20

    An improved well-pump for geothermal wells, an alignment system for a well-pump, and to a method for aligning a rotor and stator within a well-pump are disclosed, wherein the well-pump has a whistle assembly formed at a bottom portion thereof, such that variations in the frequency of the whistle, indicating misalignment, may be monitored during pumping. 6 figs.

  4. BinAligner: a heuristic method to align biological networks

    PubMed Central

    2013-01-01

    The advances in high throughput omics technologies have made it possible to characterize molecular interactions within and across various species. Alignments and comparison of molecular networks across species will help detect orthologs and conserved functional modules and provide insights on the evolutionary relationships of the compared species. However, such analyses are not trivial due to the complexity of network and high computational cost. Here we develop a mixture of global and local algorithm, BinAligner, for network alignments. Based on the hypotheses that the similarity between two vertices across networks would be context dependent and that the information from the edges and the structures of subnetworks can be more informative than vertices alone, two scoring schema, 1-neighborhood subnetwork and graphlet, were introduced to derive the scoring matrices between networks, besides the commonly used scoring scheme from vertices. Then the alignment problem is formulated as an assignment problem, which is solved by the combinatorial optimization algorithm, such as the Hungarian method. The proposed algorithm was applied and validated in aligning the protein-protein interaction network of Kaposi's sarcoma associated herpesvirus (KSHV) and that of varicella zoster virus (VZV). Interestingly, we identified several putative functional orthologous proteins with similar functions but very low sequence similarity between the two viruses. For example, KSHV open reading frame 56 (ORF56) and VZV ORF55 are helicase-primase subunits with sequence identity 14.6%, and KSHV ORF75 and VZV ORF44 are tegument proteins with sequence identity 15.3%. These functional pairs can not be identified if one restricts the alignment into orthologous protein pairs. In addition, BinAligner identified a conserved pathway between two viruses, which consists of 7 orthologous protein pairs and these proteins are connected by conserved links. This pathway might be crucial for virus packing and

  5. DIDA: Distributed Indexing Dispatched Alignment

    PubMed Central

    Mohamadi, Hamid; Vandervalk, Benjamin P; Raymond, Anthony; Jackman, Shaun D; Chu, Justin; Breshears, Clay P; Birol, Inanc

    2015-01-01

    One essential application in bioinformatics that is affected by the high-throughput sequencing data deluge is the sequence alignment problem, where nucleotide or amino acid sequences are queried against targets to find regions of close similarity. When queries are too many and/or targets are too large, the alignment process becomes computationally challenging. This is usually addressed by preprocessing techniques, where the queries and/or targets are indexed for easy access while searching for matches. When the target is static, such as in an established reference genome, the cost of indexing is amortized by reusing the generated index. However, when the targets are non-static, such as contigs in the intermediate steps of a de novo assembly process, a new index must be computed for each run. To address such scalability problems, we present DIDA, a novel framework that distributes the indexing and alignment tasks into smaller subtasks over a cluster of compute nodes. It provides a workflow beyond the common practice of embarrassingly parallel implementations. DIDA is a cost-effective, scalable and modular framework for the sequence alignment problem in terms of memory usage and runtime. It can be employed in large-scale alignments to draft genomes and intermediate stages of de novo assembly runs. The DIDA source code, sample files and user manual are available through http://www.bcgsc.ca/platform/bioinfo/software/dida. The software is released under the British Columbia Cancer Agency License (BCCA), and is free for academic use. PMID:25923767

  6. Global Alignment System for Large Genomic Sequencing

    2002-03-01

    AVID is a global alignment system tailored for the alignment of large genomic sequences up to megabases in length. Features include the possibility of one sequence being in draft form, fast alignment, robustness and accuracy. The method is an anchor based alignment using maximal matches derived from suffix trees.

  7. Photosensitive Polymers for Liquid Crystal Alignment

    NASA Astrophysics Data System (ADS)

    Mahilny, U. V.; Stankevich, A. I.; Trofimova, A. V.; Muravsky, A. A.; Murauski, A. A.

    The peculiarities of alignment of liquid crystal (LC) materials by the layers of photocrosslinkable polymers with side benzaldehyde groups are considered. The investigation of mechanism of photostimulated alignment by rubbed benzaldehyde layer is performed. The methods of creation of multidomain aligning layers on the basis of photostimulated rubbing alignment are described.

  8. Alignment method for parabolic trough solar concentrators

    DOEpatents

    Diver, Richard B.

    2010-02-23

    A Theoretical Overlay Photographic (TOP) alignment method uses the overlay of a theoretical projected image of a perfectly aligned concentrator on a photographic image of the concentrator to align the mirror facets of a parabolic trough solar concentrator. The alignment method is practical and straightforward, and inherently aligns the mirror facets to the receiver. When integrated with clinometer measurements for which gravity and mechanical drag effects have been accounted for and which are made in a manner and location consistent with the alignment method, all of the mirrors on a common drive can be aligned and optimized for any concentrator orientation.

  9. Combining Multiple Pairwise Structure-based Alignments

    SciTech Connect

    2014-11-12

    CombAlign is a new Python code that generates a gapped, one-to-many, multiple structure-based sequence alignment(MSSA) given a set of pairwise structure-based alignments. In order to better define regions of similarity among related protein structures, it is useful to detect the residue-residue correspondences among a set of pairwise structure alignments. Few codes exist for constructing a one-to-many, multiple sequence alignment derived from a set of structure alignments, and we perceived a need for creating a new tool for combing pairwise structure alignments that would allow for insertion of gaps in the reference structure.

  10. Grain Alignment in Starless Cores

    NASA Astrophysics Data System (ADS)

    Jones, T. J.; Bagley, M.; Krejny, M.; Andersson, B.-G.; Bastien, P.

    2015-01-01

    We present near-IR polarimetry data of background stars shining through a selection of starless cores taken in the K band, probing visual extinctions up to {{A}V}˜ 48. We find that {{P}K}/{{τ }K} continues to decline with increasing AV with a power law slope of roughly -0.5. Examination of published submillimeter (submm) polarimetry of starless cores suggests that by {{A}V}≳ 20 the slope for P versus τ becomes ˜-1, indicating no grain alignment at greater optical depths. Combining these two data sets, we find good evidence that, in the absence of a central illuminating source, the dust grains in dense molecular cloud cores with no internal radiation source cease to become aligned with the local magnetic field at optical depths greater than {{A}V}˜ 20. A simple model relating the alignment efficiency to the optical depth into the cloud reproduces the observations well.

  11. Transformation and alignment in similarity.

    PubMed

    Hodgetts, Carl J; Hahn, Ulrike; Chater, Nick

    2009-10-01

    This paper contrasts two structural accounts of psychological similarity: structural alignment (SA) and Representational Distortion (RD). SA proposes that similarity is determined by how readily the structures of two objects can be brought into alignment; RD measures similarity by the complexity of the transformation that "distorts" one representation into the other. We assess RD by defining a simple coding scheme of psychological transformations for the experimental materials. In two experiments, this "concrete" version of RD provides compelling fits of the data and compares favourably with SA. Finally, stepping back from particular models, we argue that perceptual theory suggests that transformations and alignment processes should generally be viewed as complementary, in contrast to the current distinction in the literature. PMID:19720370

  12. Measurements of magnetic field alignment

    SciTech Connect

    Kuchnir, M.; Schmidt, E.E.

    1987-11-06

    The procedure for installing Superconducting Super Collider (SSC) dipoles in their respective cryostats involves aligning the average direction of their field with the vertical to an accuracy of 0.5 mrad. The equipment developed for carrying on these measurements is described and the measurements performed on the first few prototypes SSC magnets are presented. The field angle as a function of position in these 16.6 m long magnets is a characteristic of the individual magnet with possible feedback information to its manufacturing procedure. A comparison of this vertical alignment characteristic with a magnetic field intensity (by NMR) characteristic for one of the prototypes is also presented. 5 refs., 7 figs.

  13. Alignment Tool For Inertia Welding

    NASA Technical Reports Server (NTRS)

    Snyder, Gary L.

    1991-01-01

    Compact, easy-to-use tool aligns drive bar of inertia welder over hole in stub. Ensures drive bar concentric to hole within 0.002 in. (0.051 mm.). Holds two batteries and light bulb. Electrical circuit completed, providing current to bulb when pin in contact with post. When pin centered in post hole, it does not touch post, and lamp turns off. Built for use in making repair welds on liquid-oxygen-injector posts in Space Shuttle main engine. Version having suitably modified dimensions used to facilitate alignment in other forests of post.

  14. XUV ionization of aligned molecules

    NASA Astrophysics Data System (ADS)

    Kelkensberg, F.; Rouzée, A.; Siu, W.; Gademann, G.; Johnsson, P.; Lucchini, M.; Lucchese, R. R.; Vrakking, M. J. J.

    2011-11-01

    New extreme-ultraviolet (XUV) light sources such as high-order-harmonic generation (HHG) and free-electron lasers (FELs), combined with laser-induced alignment techniques, enable novel methods for making molecular movies based on measuring molecular frame photoelectron angular distributions. Experiments are presented where CO2 molecules were impulsively aligned using a near-infrared laser and ionized using femtosecond XUV pulses obtained by HHG. Measured electron angular distributions reveal contributions from four orbitals and the onset of the influence of the molecular structure.

  15. XUV ionization of aligned molecules

    SciTech Connect

    Kelkensberg, F.; Siu, W.; Gademann, G.; Rouzee, A.; Vrakking, M. J. J.; Johnsson, P.; Lucchini, M.; Lucchese, R. R.

    2011-11-15

    New extreme-ultraviolet (XUV) light sources such as high-order-harmonic generation (HHG) and free-electron lasers (FELs), combined with laser-induced alignment techniques, enable novel methods for making molecular movies based on measuring molecular frame photoelectron angular distributions. Experiments are presented where CO{sub 2} molecules were impulsively aligned using a near-infrared laser and ionized using femtosecond XUV pulses obtained by HHG. Measured electron angular distributions reveal contributions from four orbitals and the onset of the influence of the molecular structure.

  16. The alignment-distribution graph

    NASA Technical Reports Server (NTRS)

    Chatterjee, Siddhartha; Gilbert, John R.; Schreiber, Robert

    1993-01-01

    Implementing a data-parallel language such as Fortran 90 on a distributed-memory parallel computer requires distributing aggregate data objects (such as arrays) among the memory modules attached to the processors. The mapping of objects to the machine determines the amount of residual communication needed to bring operands of parallel operations into alignment with each other. We present a program representation called the alignment-distribution graph that makes these communication requirements explicit. We describe the details of the representation, show how to model communication cost in this framework, and outline several algorithms for determining object mappings that approximately minimize residual communication.

  17. The alignment-distribution graph

    NASA Technical Reports Server (NTRS)

    Chatterjee, Siddhartha; Gilbert, John R.; Schreiber, Robert

    1993-01-01

    Implementing a data-parallel language such as Fortran 90 on a distributed-memory parallel computer requires distributing aggregate data objects (such as arrays) among the memory modules attached to the processors. The mapping of objects to the machine determines the amount of residual communication needed to bring operands of parallel operations into alignment with each other. We present a program representation called the alignment distribution graph that makes these communication requirements explicit. We describe the details of the representation, show how to model communication cost in this framework, and outline several algorithms for determining object mappings that approximately minimize residual communication.

  18. Aligning Assessments for COSMA Accreditation

    ERIC Educational Resources Information Center

    Laird, Curt; Johnson, Dennis A.; Alderman, Heather

    2015-01-01

    Many higher education sport management programs are currently in the process of seeking accreditation from the Commission on Sport Management Accreditation (COSMA). This article provides a best-practice method for aligning student learning outcomes with a sport management program's mission and goals. Formative and summative assessment procedures…

  19. Aligned natural inflation with modulations

    NASA Astrophysics Data System (ADS)

    Choi, Kiwoon; Kim, Hyungjin

    2016-08-01

    The weak gravity conjecture applied for the aligned natural inflation indicates that generically there can be a modulation of the inflaton potential, with a period determined by sub-Planckian axion scale. We study the oscillations in the primordial power spectrum induced by such modulation, and discuss the resulting observational constraints on the model.

  20. Laser-Beam-Alignment Controller

    NASA Technical Reports Server (NTRS)

    Krasowski, M. J.; Dickens, D. E.

    1995-01-01

    In laser-beam-alignment controller, images from video camera compared to reference patterns by fuzzy-logic pattern comparator. Results processed by fuzzy-logic microcontroller, which sends control signals to motor driver adjusting lens and pinhole in spatial filter.

  1. Tonal Alignment in Irish Dialects

    ERIC Educational Resources Information Center

    Dalton, Martha; Ni Chasaide, Ailbhe

    2005-01-01

    A comparison of the contour alignment of nuclear and initial prenuclear accents was carried out for the Irish dialects of Gaoth Dobhair in Ulster (GD-U) and Cois Fharraige in Connaught (CF-C). This was done across conditions where the number of unstressed syllables following the nuclear and preceding the initial prenuclear accents was varied from…

  2. Methods to temporally align gait cycle data.

    PubMed

    Helwig, Nathaniel E; Hong, Sungjin; Hsiao-Wecksler, Elizabeth T; Polk, John D

    2011-02-01

    The need for the temporal alignment of gait cycle data is well known; however, there is little consensus concerning which alignment method to use. In this paper, we discuss the pros and cons of some methods commonly applied to temporally align gait cycle data (normalization to percent gait cycle, dynamic time warping, derivative dynamic time warping, and piecewise alignment methods). In addition, we empirically evaluate these different methods' abilities to produce successful temporal alignment when mapping a test gait cycle trajectory to a target trajectory. We demonstrate that piecewise temporal alignment techniques outperform other commonly used alignment methods (normalization to percent gait cycle, dynamic time warping, and derivative dynamic time warping) in typical biomechanical and clinical alignment tasks. Lastly, we present an example of how these piecewise alignment techniques make it possible to separately examine intensity and temporal differences between gait cycle data throughout the entire gait cycle, which can provide greater insight into the complexities of movement patterns.

  3. Rare earth metal rich magnesium compounds RE{sub 4}NiMg (RE=Y, Pr-Nd, Sm, Gd-Tm, Lu)-Synthesis, structure, and hydrogenation behavior

    SciTech Connect

    Tuncel, Selcan; Roquefere, Jean Gabriel; Stan, Cristina; Bobet, Jean-Louis Chevalier, Bernard Gaudin, Etienne; Hoffmann, Rolf-Dieter; Rodewald, Ute Ch; Poettgen, Rainer

    2009-02-15

    The rare earth metal rich compounds RE{sub 4}NiMg (RE=Y, Pr-Nd, Sm, Gd-Tm, Lu) were synthesized from the elements in sealed tantalum tubes in an induction furnace. All compounds were investigated by X-ray diffraction on powders and single crystals: Gd{sub 4}RhIn type, space group F4-bar 3m, Z=16, a=1367.6(2) pm for Y{sub 4}NiMg, a=1403.7(3) pm for Pr{sub 4}NiMg, a=1400.7(1) pm for Nd{sub 4}NiMg, a=1386.5(2) pm for Sm{sub 4}NiMg, a=1376.1(2) pm for Gd{sub 4}NiMg, a=1362.1(1) pm for Tb{sub 4}NiMg, a=1355.1(2) pm for Dy{sub 4}NiMg, a=1355.2(1) pm for Ho{sub 4}NiMg, a=1354.3(2) pm for Er{sub 4}NiMg, a=1342.9(3) pm for Tm{sub 4}NiMg, and a=1336.7(3) pm for Lu{sub 4}NiMg. The nickel atoms have trigonal prismatic rare earth coordination. These NiRE{sub 6} prisms are condensed via common edges to a three-dimensional network which leaves voids for Mg{sub 4} tetrahedra and the RE1 atoms which show only weak coordination to the nickel atoms. The single crystal data indicate two kinds of solid solutions. The RE1 positions reveal small RE1/Mg mixing and some compounds also show Ni/Mg mixing within the Mg{sub 4} tetrahedra. Y{sub 4}NiMg and Gd{sub 4}NiMg have been tested for hydrogenation. These compounds absorb up to eleven hydrogen atoms per formula unit under a hydrogen pressure of 1 MPa at room temperature. The structure of the metal atoms is maintained with only an increase of the lattice parameters ({delta}V/V{approx}22%) if the absorption is done at T<363 K as at higher temperature a decomposition into REH{sub 2}-REH{sub 3} hydrides occurred. Moreover, the hydrogenation affects drastically the magnetic properties of these intermetallics. For instance, Gd{sub 4}NiMg exhibits an antiferromagnetic behavior below T{sub N}=92 K whereas its hydride Gd{sub 4}NiMgH{sub 11} is paramagnetic down to 1.8 K. - Graphical abstract: The Mg{sub 4} and NiGd{sub 6} units in Gd{sub 4}NiMg and Gd{sub 4}NiMgH{sub x}.

  4. Prism Window for Optical Alignment

    NASA Technical Reports Server (NTRS)

    Tang, Hong

    2008-01-01

    A prism window has been devised for use, with an autocollimator, in aligning optical components that are (1) required to be oriented parallel to each other and/or at a specified angle of incidence with respect to a common optical path and (2) mounted at different positions along the common optical path. The prism window can also be used to align a single optical component at a specified angle of incidence. Prism windows could be generally useful for orienting optical components in manufacture of optical instruments. "Prism window" denotes an application-specific unit comprising two beam-splitter windows that are bonded together at an angle chosen to obtain the specified angle of incidence.

  5. Aligned mesoporous architectures and devices.

    SciTech Connect

    Brinker, C. Jeffrey; Lu, Yunfeng

    2011-03-01

    This is the final report for the Presidential Early Career Award for Science and Engineering - PECASE (LDRD projects 93369 and 118841) awarded to Professor Yunfeng Lu (Tulane University and University of California-Los Angeles). During the last decade, mesoporous materials with tunable periodic pores have been synthesized using surfactant liquid crystalline as templates, opening a new avenue for a wide spectrum of applications. However, the applications are somewhat limited by the unfavorabe pore orientation of these materials. Although substantial effort has been devoted to align the pore channels, fabrication of mesoporous materials with perpendicular pore channels remains challenging. This project focused on fabrication of mesoporous materials with perpendicularly aligned pore channels. We demonstrated structures for use in water purification, separation, sensors, templated synthesis, microelectronics, optics, controlled release, and highly selective catalysts.

  6. Shuttle onboard IMU alignment methods

    NASA Technical Reports Server (NTRS)

    Henderson, D. M.

    1976-01-01

    The current approach to the shuttle IMU alignment is based solely on the Apollo Deterministic Method. This method is simple, fast, reliable and provides an accurate estimate for the present cluster to mean of 1,950 transformation matrix. If four or more star sightings are available, the application of least squares analysis can be utilized. The least squares method offers the next level of sophistication to the IMU alignment solution. The least squares method studied shows that a more accurate estimate for the misalignment angles is computed, and the IMU drift rates are a free by-product of the analysis. Core storage requirements are considerably more; estimated 20 to 30 times the core required for the Apollo Deterministic Method. The least squares method offers an intermediate solution utilizing as much data that is available without a complete statistical analysis as in Kalman filtering.

  7. SIM Lite: Ground Alignment of the Instrument

    NASA Technical Reports Server (NTRS)

    Dekens, Frank G.; Goullioud, Renaud; Nicaise, Fabien; Kuan, Gary; Morales, Mauricio

    2010-01-01

    We present the start of the ground alignment plan for the SIM Lite Instrument. We outline the integration and alignment of the individual benches on which all the optics are mounted, and then the alignment of the benches to form the Science and Guide interferometers. The Instrument has a guide interferometer with only a 40 arc-seconds field of regard, and 200 arc-seconds of alignment adjustability. This requires each sides of the interferometer to be aligned to a fraction of that, while at the same time be orthogonal to the baseline defined by the External Metrology Truss. The baselines of the Science and Guide interferometers must also be aligned to be parallel. The start of these alignment plans is captured in a SysML Instrument System model, in the form of activity diagrams. These activity diagrams are then related to the hardware design and requirements. We finish with future plans for the alignment and integration activities and requirements.

  8. Threaded pilot insures cutting tool alignment

    NASA Technical Reports Server (NTRS)

    Goldman, R.; Schneider, W. E.

    1966-01-01

    Threaded pilot allows machining of a port component, or boss, after the reciprocating hole has been threaded. It is used to align cutting surfaces with the boss threads, thus insuring precision alignment.

  9. Synthetic approach to designing optical alignment systems.

    PubMed

    Whang, A J; Gallagher, N C

    1988-08-15

    The objective of this study is twofold: to design reticle patterns with desirable alignment properties; to build an automatic alignment system using these patterns. We design such reticle patterns via a synthetic approach; the resultant patterns, so-called pseudonoise arrays, are binary and their autocorrelation functions are bilevel. Both properties are desirable in optical alignment. Besides, these arrays have attractive signal-to-noise ratio performance when employed in alignment. We implement the pseudonoise array as a 2-D cross-grating structure of which the grating period is much less than the wavelength of impinging light used for alignment. The short grating period feature, together with the use of polarized light, enables us to perform essentially 2-D optical alignment in one dimension. This alignment separability allows us to build a system that performs alignment automatically according to a simple 1-D algorithm. PMID:20539412

  10. Fiber alignment apparatus and method

    DOEpatents

    Kravitz, S.H.; Warren, M.E.; Snipes, M.B. Jr.; Armendariz, M.G.; Word, J.C. V

    1997-08-19

    A fiber alignment apparatus includes a micro-machined nickel spring that captures and locks arrays of single mode fibers into position. The design consists of a movable nickel leaf shaped spring and a fixed pocket where fibers are held. The fiber is slid between the spring and a fixed block, which tensions the spring. When the fiber reaches the pocket, it automatically falls into the pocket and is held by the pressure of the leaf spring. 8 figs.

  11. Fiber alignment apparatus and method

    DOEpatents

    Kravitz, Stanley H.; Warren, Mial Evans; Snipes, Jr., Morris Burton; Armendariz, Marcelino Guadalupe; Word, V., James Cole

    1997-01-01

    A fiber alignment apparatus includes a micro-machined nickel spring that captures and locks arrays of single mode fibers into position. The design consists of a movable nickel leaf shaped spring and a fixed pocket where fibers are held. The fiber is slid between the spring and a fixed block, which tensions the spring. When the fiber reaches the pocket, it automatically falls into the pocket and is held by the pressure of the leaf spring.

  12. Alignment Tool For Welding Sensor

    NASA Technical Reports Server (NTRS)

    Gilbert, Jeffrey L.; Steffins, Alfred P.

    1992-01-01

    Alignment tool enables accurate positioning of optoelectronic sensor measuring weld penetration. Designed for use on tungsten/inert-gas welding apparatus, used to adjust position of sensor so photodiode puts out maximum signal. Tangs of slotted cap bent slightly inward to provide spring force holding cap snugly on sensor mount. Tool installed and removed without aid of other tools. Length of pointer adjusted with set-screws. Used with variety of gas cup and electrode lengths.

  13. Experience in Aligning Anatomical Ontologies.

    PubMed

    Zhang, Songmao; Bodenreider, Olivier

    2007-01-01

    An ontology is a formal representation of a domain modeling the entities in the domain and their relations. When a domain is represented by multiple ontologies, there is need for creating mappings among these ontologies in order to facilitate the integration of data annotated with these ontologies and reasoning across ontologies. The objective of this paper is to recapitulate our experience in aligning large anatomical ontologies and to reflect on some of the issues and challenges encountered along the way. The four anatomical ontologies under investigation are the Foundational Model of Anatomy, GALEN, the Adult Mouse Anatomical Dictionary and the NCI Thesaurus. Their underlying representation formalisms are all different. Our approach to aligning concepts (directly) is automatic, rule-based, and operates at the schema level, generating mostly point-to-point mappings. It uses a combination of domain-specific lexical techniques and structural and semantic techniques (to validate the mappings suggested lexically). It also takes advantage of domain-specific knowledge (lexical knowledge from external resources such as the Unified Medical Language System, as well as knowledge augmentation and inference techniques). In addition to point-to-point mapping of concepts, we present the alignment of relationships and the mapping of concepts group-to-group. We have also successfully tested an indirect alignment through a domain-specific reference ontology. We present an evaluation of our techniques, both against a gold standard established manually and against a generic schema matching system. The advantages and limitations of our approach are analyzed and discussed throughout the paper.

  14. Grain alignment in starless cores

    SciTech Connect

    Jones, T. J.; Bagley, M.; Krejny, M.; Andersson, B.-G.; Bastien, P.

    2015-01-01

    We present near-IR polarimetry data of background stars shining through a selection of starless cores taken in the K band, probing visual extinctions up to A{sub V}∼48. We find that P{sub K}/τ{sub K} continues to decline with increasing A{sub V} with a power law slope of roughly −0.5. Examination of published submillimeter (submm) polarimetry of starless cores suggests that by A{sub V}≳20 the slope for P versus τ becomes ∼−1, indicating no grain alignment at greater optical depths. Combining these two data sets, we find good evidence that, in the absence of a central illuminating source, the dust grains in dense molecular cloud cores with no internal radiation source cease to become aligned with the local magnetic field at optical depths greater than A{sub V}∼20. A simple model relating the alignment efficiency to the optical depth into the cloud reproduces the observations well.

  15. Structural analysis of aligned RNAs.

    PubMed

    Voss, Björn

    2006-01-01

    The knowledge about classes of non-coding RNAs (ncRNAs) is growing very fast and it is mainly the structure which is the common characteristic property shared by members of the same class. For correct characterization of such classes it is therefore of great importance to analyse the structural features in great detail. In this manuscript I present RNAlishapes which combines various secondary structure analysis methods, such as suboptimal folding and shape abstraction, with a comparative approach known as RNA alignment folding. RNAlishapes makes use of an extended thermodynamic model and covariance scoring, which allows to reward covariation of paired bases. Applying the algorithm to a set of bacterial trp-operon leaders using shape abstraction it was able to identify the two alternating conformations of this attenuator. Besides providing in-depth analysis methods for aligned RNAs, the tool also shows a fairly well prediction accuracy. Therefore, RNAlishapes provides the community with a powerful tool for structural analysis of classes of RNAs and is also a reasonable method for consensus structure prediction based on sequence alignments. RNAlishapes is available for online use and download at http://rna.cyanolab.de. PMID:17020924

  16. Aligning Plasma-Arc Welding Oscillations

    NASA Technical Reports Server (NTRS)

    Norris, Jeff; Fairley, Mike

    1989-01-01

    Tool aids in alignment of oscillator probe on variable-polarity plasma-arc welding torch. Probe magnetically pulls arc from side to side as it moves along joint. Tensile strength of joint depends on alignment of weld bead and on alignment of probe. Operator installs new tool on front of torch body, levels it with built-in bubble glass, inserts probe in slot on tool, and locks probe in place. Procedure faster and easier and resulting alignment more accurate and repeatable.

  17. Uniaxial alignment of nanoconfined columnar mesophases.

    PubMed

    Mouthuy, Pierre-Olivier; Melinte, Sorin; Geerts, Yves H; Jonas, Alain M

    2007-09-01

    By confining discotic phthalocyanines in a network of crisscrossed nanogrooves, we obtain a uniaxial alignment of the columnar mesophase. The alignment process is based on the anisotropy of interface tension between the mesophase and the nanogrooves' walls. Preferential mesophase alignment results from this nonhomogeneity combined with the anisotropy of the network cell dimensions. A simple model is proposed to explain the experimental observations.

  18. Vertically aligned nanostructure scanning probe microscope tips

    DOEpatents

    Guillorn, Michael A.; Ilic, Bojan; Melechko, Anatoli V.; Merkulov, Vladimir I.; Lowndes, Douglas H.; Simpson, Michael L.

    2006-12-19

    Methods and apparatus are described for cantilever structures that include a vertically aligned nanostructure, especially vertically aligned carbon nanofiber scanning probe microscope tips. An apparatus includes a cantilever structure including a substrate including a cantilever body, that optionally includes a doped layer, and a vertically aligned nanostructure coupled to the cantilever body.

  19. Ultrafast electron diffraction from aligned molecules

    SciTech Connect

    Centurion, Martin

    2015-08-17

    The aim of this project was to record time-resolved electron diffraction patterns of aligned molecules and to reconstruct the 3D molecular structure. The molecules are aligned non-adiabatically using a femtosecond laser pulse. A femtosecond electron pulse then records a diffraction pattern while the molecules are aligned. The diffraction patterns are then be processed to obtain the molecular structure.

  20. Aligning Performance: Improving People, Systems, and Organizations.

    ERIC Educational Resources Information Center

    Langdon, Danny

    Performance is the actual work that is done to assure that an organization achieves its mission, and aligning that performance assures that the path to the mission is harmonious. Alignment exists when all people involved understand the dimensions of the work and want to achieve and improve alignment. This book presents the "Language of Work" model…

  1. Physician-Hospital Alignment in Orthopedic Surgery.

    PubMed

    Bushnell, Brandon D

    2015-09-01

    The concept of "alignment" between physicians and hospitals is a popular buzzword in the age of health care reform. Despite their often tumultuous histories, physicians and hospitals find themselves under increasing pressures to work together toward common goals. However, effective alignment is more than just simple cooperation between parties. The process of achieving alignment does not have simple, universal steps. Alignment will differ based on individual situational factors and the type of specialty involved. Ultimately, however, there are principles that underlie the concept of alignment and should be a part of any physician-hospital alignment efforts. In orthopedic surgery, alignment involves the clinical, administrative, financial, and even personal aspects of a surgeon's practice. It must be based on the principles of financial interest, clinical authority, administrative participation, transparency, focus on the patient, and mutual necessity. Alignment can take on various forms as well, with popular models consisting of shared governance and comanagement, gainsharing, bundled payments, accountable care organizations, and other methods. As regulatory and financial pressures continue to motivate physicians and hospitals to develop alignment relationships, new and innovative methods of alignment will also appear. Existing models will mature and evolve, with individual variability based on local factors. However, certain trends seem to be appearing as time progresses and alignment relationships deepen, including regional and national collaboration, population management, and changes in the legal system. This article explores the history, principles, and specific methods of physician-hospital alignment and its critical importance for the future of health care delivery.

  2. Alignment of lower-limb prostheses.

    PubMed

    Zahedi, M S; Spence, W D; Solomonidis, S E; Paul, J P

    1986-04-01

    Alignment of a prosthesis is defined as the position of the socket relative to the other prosthetic components of the limb. During dynamic alignment the prosthetist, using subjective judgment and feedback from the patient, aims to achieve the most suitable limb geometry for best function and comfort. Until recently it was generally believed that a patient could only be satisfied with a unique "optimum alignment." The purpose of this systematic study of lower-limb alignment parameters was to gain an understanding of the factors that make a limb configuration or optimum alignment, acceptable to the patient, and to obtain a measure of the variation of this alignment that would be acceptable to the amputee. In this paper, the acceptable range of alignments for 10 below- and 10 above-knee amputees are established. Three prosthetists were involved in the majority of the 183 below-knee and 100 above-knee fittings, although several other prosthetists were also involved. The effects of each different prosthetist on the established range of alignment for each patient are reported to be significant. It is now established that an amputee can tolerate several alignments ranging in some parameters by as much as 148 mm in shifts and 17 degrees in tilts. This paper describes the method of defining and measuring the alignment of lower-limb prostheses. It presents quantitatively established values for bench alignment position and the range of adjustment required for incorporation into the design of new alignment units.

  3. Accelerator and transport line survey and alignment

    SciTech Connect

    Ruland, R.E.

    1991-10-01

    This paper summarizes the survey and alignment processes of accelerators and transport lines and discusses the propagation of errors associated with these processes. The major geodetic principles governing the survey and alignment measurement space are introduced and their relationship to a lattice coordinate system shown. The paper continues with a broad overview about the activities involved in the step sequence from initial absolute alignment to final smoothing. Emphasis is given to the relative alignment of components, in particular to the importance of incorporating methods to remove residual systematic effects in surveying and alignment operations. Various approaches to smoothing used at major laboratories are discussed. 47 refs., 19 figs., 1 tab.

  4. Simultaneous Alignment and Folding of Protein Sequences

    PubMed Central

    Waldispühl, Jérôme; O'Donnell, Charles W.; Will, Sebastian; Devadas, Srinivas; Backofen, Rolf

    2014-01-01

    Abstract Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding problems. We present partiFold-Align, the first algorithm for simultaneous alignment and consensus folding of unaligned protein sequences; the algorithm's complexity is polynomial in time and space. Algorithmically, partiFold-Align exploits sparsity in the set of super-secondary structure pairings and alignment candidates to achieve an effectively cubic running time for simultaneous pairwise alignment and folding. We demonstrate the efficacy of these techniques on transmembrane β-barrel proteins, an important yet difficult class of proteins with few known three-dimensional structures. Testing against structurally derived sequence alignments, partiFold-Align significantly outperforms state-of-the-art pairwise and multiple sequence alignment tools in the most difficult low-sequence homology case. It also improves secondary structure prediction where current approaches fail. Importantly, partiFold-Align requires no prior training. These general techniques are widely applicable to many more protein families (partiFold-Align is available at http://partifold.csail.mit.edu/). PMID:24766258

  5. Alignment method for solar collector arrays

    DOEpatents

    Driver, Jr., Richard B

    2012-10-23

    The present invention is directed to an improved method for establishing camera fixture location for aligning mirrors on a solar collector array (SCA) comprising multiple mirror modules. The method aligns the mirrors on a module by comparing the location of the receiver image in photographs with the predicted theoretical receiver image location. To accurately align an entire SCA, a common reference is used for all of the individual module images within the SCA. The improved method can use relative pixel location information in digital photographs along with alignment fixture inclinometer data to calculate relative locations of the fixture between modules. The absolute locations are determined by minimizing alignment asymmetry for the SCA. The method inherently aligns all of the mirrors in an SCA to the receiver, even with receiver position and module-to-module alignment errors.

  6. Target alignment in the National Ignition Facility

    SciTech Connect

    Vann, C.S.; Bliss, E.S.; Murray, J.E.

    1994-06-06

    Accurate placement of hundreds of focused laser beams on target is necessary to achieve success in the National Ignition Facility (NIF). The current system requirement is {le}7 {mu}rad error in output pointing and {le}1 mm error in focusing. To accommodate several system shots per day, a target alignment system must be able to align the target to chamber center, inject an alignment beam to represent each shot beam, and point and focus the alignment beams onto the target in about one hour. At Lawrence Livermore National Laboratory, we have developed a target alignment concept and built a prototype to validate the approach. The concept comprises three systems: the chamber center reference, target alignment sensor, and target alignment beams.

  7. Antares beam-alignment-system performance

    SciTech Connect

    Appert, Q.D.; Bender, S.C.

    1983-01-01

    The beam alignment system for the 24-beam-sector Antares CO/sub 2/ fusion laser automatically aligns more than 200 optical elements. A visible-wavelength alignment technique is employed which uses a telescope/TV system to view point-light sources appropriately located down the beamline. The centroids of the light spots are determined by a video tracker, which generates error signals used by the computer control system to move appropriate mirrors in a closed-loop system. Final touch-up alignment is accomplished by projecting a CO/sub 2/ alignment laser beam through the system and sensing its position at the target location. The techniques and control algorithms employed have resulted in alignment accuracies exceeding design requirements. By employing video processing to determine the centroids of diffraction images and by averaging over multiple TV frames, we achieve alignment accuracies better than 0.1 times system diffraction limits in the presence of air turbulence.

  8. Combining Multiple Pairwise Structure-based Alignments

    2014-11-12

    CombAlign is a new Python code that generates a gapped, one-to-many, multiple structure-based sequence alignment(MSSA) given a set of pairwise structure-based alignments. In order to better define regions of similarity among related protein structures, it is useful to detect the residue-residue correspondences among a set of pairwise structure alignments. Few codes exist for constructing a one-to-many, multiple sequence alignment derived from a set of structure alignments, and we perceived a need for creating a newmore » tool for combing pairwise structure alignments that would allow for insertion of gaps in the reference structure.« less

  9. Pupil Alignment Measuring Technique and Alignment Reference for Instruments or Optical Systems

    NASA Technical Reports Server (NTRS)

    Hagopian, John G.

    2010-01-01

    A technique was created to measure the pupil alignment of instruments in situ by measuring calibrated pupil alignment references (PARs) in instruments. The PAR can also be measured using an alignment telescope or an imaging system. PAR allows the verification of the science instrument (SI) pupil alignment at the integrated science instrument module (ISIM) level of assembly at ambient and cryogenic operating temperature. This will allow verification of the ISIM+SI alignment, and provide feedback to realign the SI if necessary.

  10. Aligned interactions in cosmic rays

    SciTech Connect

    Kempa, J.

    2015-12-15

    The first clean Centauro was found in cosmic rays years many ago at Mt Chacaltaya experiment. Since that time, many people have tried to find this type of interaction, both in cosmic rays and at accelerators. But no one has found a clean cases of this type of interaction.It happened finally in the last exposure of emulsion at Mt Chacaltaya where the second clean Centauro has been found. The experimental data for both the Centauros and STRANA will be presented and discussed in this paper. We also present our comments to the intriguing question of the existence of a type of nuclear interactions at high energy with alignment.

  11. MEANS FOR DETERMINING CENTRIFUGE ALIGNMENT

    DOEpatents

    Smith, W.Q.

    1958-08-26

    An apparatus is presented for remotely determining the alignment of a centrifuge. The centrifage shaft is provided with a shoulder, upon which two followers ride, one for detecting radial movements, and one upon the shoulder face for determining the axial motion. The followers are attached to separate liquid filled bellows, and a tube connects each bellows to its respective indicating gage at a remote location. Vibrations produced by misalignment of the centrifuge shaft are transmitted to the bellows, and tbence through the tubing to the indicator gage. This apparatus is particularly useful for operation in a hot cell where the materials handled are dangerous to the operating personnel.

  12. Aligned interactions in cosmic rays

    NASA Astrophysics Data System (ADS)

    Kempa, J.

    2015-12-01

    The first clean Centauro was found in cosmic rays years many ago at Mt Chacaltaya experiment. Since that time, many people have tried to find this type of interaction, both in cosmic rays and at accelerators. But no one has found a clean cases of this type of interaction.It happened finally in the last exposure of emulsion at Mt Chacaltaya where the second clean Centauro has been found. The experimental data for both the Centauros and STRANA will be presented and discussed in this paper. We also present our comments to the intriguing question of the existence of a type of nuclear interactions at high energy with alignment.

  13. Ridge effect and alignment phenomenon

    SciTech Connect

    Lokhtin, I. P. Managadze, A. K. Snigirev, A. M.

    2013-05-15

    It is assumed that the ridge effect observed by the CMS Collaboration in proton-proton collisions at the LHC and the phenomenon observed by the Pamir Collaboration in emulsion experiments with cosmic rays and characterized by the alignment of spots on a film is a manifestation of the same as-yet-unknown mechanism of the emergence of a coplanar structure of events. A large coplanar effect at the LHC in the region of forward rapidities is predicted on the basis of this hypothesis and an analysis of experimental data.

  14. Method for protein structure alignment

    DOEpatents

    Blankenbecler, Richard; Ohlsson, Mattias; Peterson, Carsten; Ringner, Markus

    2005-02-22

    This invention provides a method for protein structure alignment. More particularly, the present invention provides a method for identification, classification and prediction of protein structures. The present invention involves two key ingredients. First, an energy or cost function formulation of the problem simultaneously in terms of binary (Potts) assignment variables and real-valued atomic coordinates. Second, a minimization of the energy or cost function by an iterative method, where in each iteration (1) a mean field method is employed for the assignment variables and (2) exact rotation and/or translation of atomic coordinates is performed, weighted with the corresponding assignment variables.

  15. Strategies for active alignment of lenses

    NASA Astrophysics Data System (ADS)

    Langehanenberg, Patrik; Heinisch, Josef; Wilde, Chrisitan; Hahne, Felix; Lüerß, Bernd

    2015-10-01

    Today's optical systems require up-to-date assembly and joining technology. The trend of keeping dimensions as small as possible while maintaining or increasing optical imaging performance leaves little to no room for mechanical lens adjustment equipment that may remain in the final product. In this context active alignment of optical elements opens up possibilities for the fast and cost-economic manufacturing of lenses and lens assemblies with highest optical performance. Active alignment for lens manufacturing is the precise alignment of the optical axis of a lens with respect to an optical or mechanical reference axis (e.g. housing) including subsequent fixation by glue. In this contribution we will describe different approaches for active alignment and outline strengths and limitations of the different methods. Using the SmartAlign principle, highest quality cemented lenses can be manufactured without the need for high precision prealignment, while the reduction to a single alignment step greatly reduces the cycle time. The same strategies can also be applied to bonding processes. Lenses and lens groups can be aligned to both mechanical and optical axes to maximize the optical performance of a given assembly. In hybrid assemblies using both mechanical tolerances and active alignment, SmartAlign can be used to align critical lens elements anywhere inside the system for optimized total performance. Since all geometrical parameters are re-measured before each alignment, this process is especially suited for complex and time-consuming production processes where the stability of the reference axis would otherwise be critical. For highest performance, lenses can be actively aligned using up to five degrees of freedom. In this way, SmartAlign enables the production of ultra-precise mounted lenses with an alignment precision below 1 μm.

  16. Measuring alignment of loading fixture

    DOEpatents

    Scavone, Donald W.

    1989-01-01

    An apparatus and method for measuring the alignment of a clevis and pin type loading fixture for compact tension specimens include a pair of substantially identical flat loading ligaments. Each loading ligament has two apertures for the reception of a respective pin of the loading fixture and a thickness less than one-half of a width of the clevis opening. The pair of loading ligaments are mounted in the clevis openings at respective sides thereof. The loading ligaments are then loaded by the pins of the loading fixture and the strain in each loading ligament is measured. By comparing the relative strain of each loading ligament, the alignment of the loading fixture is determined. Preferably, a suitable strain gage device is located at each longitudinal edge of a respective loading ligament equidistant from the two apertures in order to determine the strain thereat and hence the strain of each ligament. The loading ligaments are made substantially identical by jig grinding the loading ligaments as a matched set. Each loading ligament can also be individually calibrated prior to the measurement.

  17. Galaxy alignment on large and small scales

    NASA Astrophysics Data System (ADS)

    Kang, X.; Lin, W. P.; Dong, X.; Wang, Y. O.; Dutton, A.; Macciò, A.

    2016-10-01

    Galaxies are not randomly distributed across the universe but showing different kinds of alignment on different scales. On small scales satellite galaxies have a tendency to distribute along the major axis of the central galaxy, with dependence on galaxy properties that both red satellites and centrals have stronger alignment than their blue counterparts. On large scales, it is found that the major axes of Luminous Red Galaxies (LRGs) have correlation up to 30Mpc/h. Using hydro-dynamical simulation with star formation, we investigate the origin of galaxy alignment on different scales. It is found that most red satellite galaxies stay in the inner region of dark matter halo inside which the shape of central galaxy is well aligned with the dark matter distribution. Red centrals have stronger alignment than blue ones as they live in massive haloes and the central galaxy-halo alignment increases with halo mass. On large scales, the alignment of LRGs is also from the galaxy-halo shape correlation, but with some extent of mis-alignment. The massive haloes have stronger alignment than haloes in filament which connect massive haloes. This is contrary to the naive expectation that cosmic filament is the cause of halo alignment.

  18. Automated interferometric alignment system for paraboloidal mirrors

    DOEpatents

    Maxey, L.C.

    1993-09-28

    A method is described for a systematic method of interpreting interference fringes obtained by using a corner cube retroreflector as an alignment aid when aligning a paraboloid to a spherical wavefront. This is applicable to any general case where such alignment is required, but is specifically applicable in the case of aligning an autocollimating test using a diverging beam wavefront. In addition, the method provides information which can be systematically interpreted such that independent information about pitch, yaw and focus errors can be obtained. Thus, the system lends itself readily to automation. Finally, although the method is developed specifically for paraboloids, it can be seen to be applicable to a variety of other aspheric optics when applied in combination with a wavefront corrector that produces a wavefront which, when reflected from the correctly aligned aspheric surface will produce a collimated wavefront like that obtained from the paraboloid when it is correctly aligned to a spherical wavefront. 14 figures.

  19. Droplet Vorticity Alignment in Model Polymer Blends

    NASA Astrophysics Data System (ADS)

    Migler, Kalman

    2000-03-01

    The shear induced deformation of polymeric droplets in an immiscible polymeric matrix is studied using a transparent rotating plate-plate device. We consider the case where the viscosity ratio of the two phases is near unity, but the elasticity ratio of the droplet to the matrix is of order 10^2. This is achieved by using a matrix of PDMS and a droplet of a PIB based Boger fluid. In the limit of weak shear and small droplets, the droplet alignment is along the shear direction, whereas for strong shear and large droplets, the alignment is along the vorticity direction. There is a range of conditions for which alignment can be along either axis. For droplets aligned along the vorticity axis, the distribution of aspect ratios is broad. The transformation from flow alignment to vorticity alignment upon commencement of shear flow has been observed and correlates with the time scale for development of normal forces in the Boger fluid.

  20. Multiple alignment using hidden Markov models

    SciTech Connect

    Eddy, S.R.

    1995-12-31

    A simulated annealing method is described for training hidden Markov models and producing multiple sequence alignments from initially unaligned protein or DNA sequences. Simulated annealing in turn uses a dynamic programming algorithm for correctly sampling suboptimal multiple alignments according to their probability and a Boltzmann temperature factor. The quality of simulated annealing alignments is evaluated on structural alignments of ten different protein families, and compared to the performance of other HMM training methods and the ClustalW program. Simulated annealing is better able to find near-global optima in the multiple alignment probability landscape than the other tested HMM training methods. Neither ClustalW nor simulated annealing produce consistently better alignments compared to each other. Examination of the specific cases in which ClustalW outperforms simulated annealing, and vice versa, provides insight into the strengths and weaknesses of current hidden Maxkov model approaches.

  1. IAIMFAST: Alignment Implementation for Manufacturing

    2013-08-29

    AIMFAST is a software code used to align facets on a dish concentrator to a specific aimpoint strategy to minimize peak fluxes and maximize system optical performance. AIM FAST uses a large monitor to display fringe patterns, and a machine vision camera to image the reflection of these patterns in the subject dish mirrors. From these images, a detailed map of surface normals can be generated and compared to design or fitted mirror shapes. Thismore » fitted comparison is then used to develop a single vector representing the orientation of the facets relative to the design orientation, and provide near-real-time adjustment information to a communicating computer. The communicating computer can display adjustments or directly interface with adjustment tools.« less

  2. AIMFAST: Alignment Implementation for Manufacturing

    2012-09-13

    AIMFAST is a software code used to align facets on a dish concentrator to a specific aimpoint strategy to minimize peak fluxes and maximize system optical performance. AIMFAST uses a large monitor or projections screen to display fringe patterns, and a machine vision camera to image the reflection of these patterns in the subject dish mirrors. From these images, a detailed map of surface normals can be generated and compared to design or fitted mirrormore » shapes. This fitted comparison is then used to develop a single vector representing the orientation of the facets relative to the design orientation, and provide near-real-time adjustment information to a communicating computer. The communicating computer can display adjustments or directly interface with adjustment tools. The software for the communicating computer is specific to the implementation and is not a part of AIMFAST.« less

  3. IAIMFAST: Alignment Implementation for Manufacturing

    SciTech Connect

    Andraka, Charles E.

    2013-08-29

    AIMFAST is a software code used to align facets on a dish concentrator to a specific aimpoint strategy to minimize peak fluxes and maximize system optical performance. AIM FAST uses a large monitor to display fringe patterns, and a machine vision camera to image the reflection of these patterns in the subject dish mirrors. From these images, a detailed map of surface normals can be generated and compared to design or fitted mirror shapes. This fitted comparison is then used to develop a single vector representing the orientation of the facets relative to the design orientation, and provide near-real-time adjustment information to a communicating computer. The communicating computer can display adjustments or directly interface with adjustment tools.

  4. AIMFAST: Alignment Implementation for Manufacturing

    SciTech Connect

    2012-09-13

    AIMFAST is a software code used to align facets on a dish concentrator to a specific aimpoint strategy to minimize peak fluxes and maximize system optical performance. AIMFAST uses a large monitor or projections screen to display fringe patterns, and a machine vision camera to image the reflection of these patterns in the subject dish mirrors. From these images, a detailed map of surface normals can be generated and compared to design or fitted mirror shapes. This fitted comparison is then used to develop a single vector representing the orientation of the facets relative to the design orientation, and provide near-real-time adjustment information to a communicating computer. The communicating computer can display adjustments or directly interface with adjustment tools. The software for the communicating computer is specific to the implementation and is not a part of AIMFAST.

  5. The Alignment of Galaxy Structures

    NASA Astrophysics Data System (ADS)

    Biernacka, M.; Panko, E.; Bajan, K.; Godłowski, W.; Flin, P.

    2015-11-01

    We analyzed the orientation of the sample of ACO galaxy clusters. We examined the alignment in a subsample of 1056 galaxy structures taken from the Panko-Flin (2006) Catalog with known BM morphological types. We were looking for a correlation between the orientation of the cluster and the positions of neighboring clusters. The Binggeli effect (the excess of small values of the Δθ angles between the direction toward neighboring clusters and the cluster position angle) is observed, having a range up to about 45 h-1 Mpc. The strongest effect was found for elongated BM type I clusters. This is probably connected with the origins of the supergiant galaxy and with cluster formation along a long filament or plane in a supercluster.

  6. Alignment performance monitoring for ASML systems

    NASA Astrophysics Data System (ADS)

    Chung, Woong-Jae; Temchenko, Vlad; Hauck, Tarja; Schmidt, Sebastian

    2006-03-01

    In today's semiconductor industry downscaling of the IC design puts a stringent requirement on pattern overlay control. Tighter overlay requirements lead to exceedingly higher rework rates, meaning additional costs to manufacturing. Better alignment control became a target of engineering efforts to decrease rework rate for high-end technologies. Overlay performance is influenced by known parameters such as "Shift, Scaling, Rotation, etc", and unknown parameters defined as "Process Induced Variation", which are difficult to control by means of a process automation system. In reality, this process-induced variation leads to a strong wafer to wafer, or lot to lot variation, which are not easy to detect in the mass-production environment which uses sampling overlay measurements for only several wafers in a lot. An engineering task of finding and correcting a root cause for Process Induced Variations of overlay performance will be greatly simplified if the unknown parameters could be tracked for each wafer. This paper introduces an alignment performance monitoring method based on analysis of automatically generated "AWE" files for ASML scanner systems. Because "AWE" files include alignment results for each aligned wafer, it is possible to use them for monitoring, controlling and correcting the causes of "process induced" overlay performance without requiring extra measurement time. Since "AWE" files include alignment information for different alignment marks, it is also possible to select and optimize the best alignment recipe for each alignment strategy. Several case studies provided in our paper will demonstrate how AWE file analysis can be used to assist engineer in interpreting pattern alignment data. Since implementing our alignment data monitoring method, we were able to achieve significant improvement of alignment and overlay performance without additional overlay measurement time. We also noticed that the rework rate coming from alignment went down and

  7. COS to FGS Alignment {NUV}

    NASA Astrophysics Data System (ADS)

    Hartig, George

    2009-07-01

    DESCRIPTION: In order to determine the location of the COS reference frame with respect to the FGS reference frames, NUV MIRRORA images will be obtained of an astrometric target and field. Astrometric guide stars and targets must be employed for this activity in order to facilitate the alignment wth the FGS. Images will be obtained at the initial pointing and at positions offset in V2 and in V3. Starting with the original blind pointing, obtain MIRRORA image exposures in a 5x5 POS-TARG grid centered on initial pointing; repeat the image sequence at two bracketing focus positions in same visit. Following completion of third pattern, return to nominal focus and perform 5x5 ACQ/SEARCH target acquisition and obtain one TIME-TAG MIRRORA image and one ACCUM verification exposure. Next perform an ACQ/IMAGE target acquisition followed by an ACCUM verification exposure. Also obtain ACCUM verification exposure for each of the two alternate focus positions used previously. Using MIRRORB obtain ACCUM confirmation image at nominal focus and ACCUM images at alternate focus positions and then perform an ACQ/IMAGE and confirming image at nominal focus. Analyze imagery, uplink pointing offset as offset 11469A and adjust nominal focus via patchable constant uplinked with subsequent visit of this program; update aperture locations via modified SIAF file uplinked with subsequent SMS. Use updated focus and offset pointing as input for COS 09 {program 11469 - NUV Optics Alignment and Focus} {note the SIAF update is not a prerequisite for COS 09 to proceed, but the pointing offset and focus update are}.

  8. The complex metal-rich boride Ti{sub 1+x}Rh{sub 2-x+y}Ir{sub 3-y}B{sub 3} (x=0.68, y=1.06) with a new structure type containing B{sub 4} zigzag fragments: Synthesis, crystal chemistry and theoretical calculations

    SciTech Connect

    Goerens, Christian; Fokwa, Boniface P.T.

    2012-08-15

    Polycrystalline samples and single crystals of the new complex boride Ti{sub 1+x}Rh{sub 2-x+y}Ir{sub 3-y}B{sub 3} (x=0.68; y=1.06) were synthesized by arc-melting the elements in a water-cooled copper crucible under an argon atmosphere and characterized by X-Ray diffraction as well as EDX measurements. The crystal structure was refined on the basis of single crystal data. The new phase, which represents a new structure type containing trans zigzag B{sub 4} fragments as well as isolated boron atoms crystallizes in the orthorhombic space group Pbam (Nr. 55) with the lattice parameters a=8.620(1) A, b=14.995(2) A and c=3.234(1) A. First-principles density functional theory calculations using the Vienna ab-initio simulation package (VASP) were performed on an appropriate structural model (using a supercell approach) and the experimental crystallographic data could be reproduced accurately. Based on this model, the density of states and crystal orbital Hamilton population (for bonding analysis) were calculated, using the linear muffin-tin orbital atomic sphere approximation (LMTO-ASA) method. According to these calculations, this metal-rich compound should be metallic, as expected. Furthermore, very strong boron-boron interactions are observed in the trans zigzag B{sub 4} fragment, which induce a clear differentiation of two types of metal-boron contacts with different strength. The observed three-dimensional metal-metal interaction is in good agreement with the predicted metallic behavior. - graphical abstract: The structure of Ti{sub 1.68(2)}Rh{sub 2.38(6)}Ir{sub 1.94(4)} B{sub 3}, a new structure type containing planar trans zigzag B{sub 4} units, is another example which illustrates the tendency of metal-rich borides to form B-B bonds with increasing boron content. Beside the B{sub 4} fragment it exhibits one-dimensional chains of titanium atoms and hold one-dimensional strings of face-sharing empty tetrahedral and square pyramidal clusters (see figure). Highlights

  9. VIRUS spectrograph assembly and alignment procedures

    NASA Astrophysics Data System (ADS)

    Prochaska, Travis; Allen, Richard D.; Boster, Emily; DePoy, D. L.; Herbig, Benjamin; Hill, Gary J.; Lee, Hanshin; Marshall, Jennifer L.; Martin, Emily C.; Meador, William; Rheault, Jean-Philippe; Tuttle, Sarah E.; Vattiat, Brian L.

    2012-09-01

    We describe the mechanical assembly and optical alignment processes used to construct the Visual Integral-Field Replicable Unit Spectrograph (VIRUS) instrument. VIRUS is a set of 150+ optical spectrographs designed to support observations for the Hobby-Eberly Telescope Dark Energy Experiment (HETDEX). To meet the instrument's manufacturing constraints, a production line will be set up to build subassemblies in parallel. To aid in the instrument's assembly and alignment, specialized fixtures and adjustment apparatuses have been developed. We describe the design and operations of the various optics alignment apparatuses, as well as the mirrors' alignment and bonding fixtures.

  10. Advancements of vertically aligned liquid crystal displays.

    PubMed

    Kumar, Pankaj; Jaggi, Chinky; Sharma, Vandna; Raina, Kuldeep Kumar

    2016-02-01

    This review describes the recent advancements in the field of the vertical aligned (VA) liquid crystal displays. The process and formation of different vertical alignment modes such as conventional VA, patterned VA, multi-domain VA, and polymer stabilised VA etc are widely discussed. Vertical alignment of liquid crystal due to nano particle dispersion in LC host, bifunctional PR-SAM formed by silane coupling reaction to oxide surfaces, azo dye etc., are also highlighted and discussed. Overall, the article highlights the advances in the research of vertical aligned liquid crystal in terms of their scientific and technological aspects.

  11. The twilight zone of cis element alignments.

    PubMed

    Sebastian, Alvaro; Contreras-Moreira, Bruno

    2013-02-01

    Sequence alignment of proteins and nucleic acids is a routine task in bioinformatics. Although the comparison of complete peptides, genes or genomes can be undertaken with a great variety of tools, the alignment of short DNA sequences and motifs entails pitfalls that have not been fully addressed yet. Here we confront the structural superposition of transcription factors with the sequence alignment of their recognized cis elements. Our goals are (i) to test TFcompare (http://floresta.eead.csic.es/tfcompare), a structural alignment method for protein-DNA complexes; (ii) to benchmark the pairwise alignment of regulatory elements; (iii) to define the confidence limits and the twilight zone of such alignments and (iv) to evaluate the relevance of these thresholds with elements obtained experimentally. We find that the structure of cis elements and protein-DNA interfaces is significantly more conserved than their sequence and measures how this correlates with alignment errors when only sequence information is considered. Our results confirm that DNA motifs in the form of matrices produce better alignments than individual sequences. Finally, we report that empirical and theoretically derived twilight thresholds are useful for estimating the natural plasticity of regulatory sequences, and hence for filtering out unreliable alignments.

  12. DNAAlignEditor: DNA alignment editor tool

    PubMed Central

    Sanchez-Villeda, Hector; Schroeder, Steven; Flint-Garcia, Sherry; Guill, Katherine E; Yamasaki, Masanori; McMullen, Michael D

    2008-01-01

    Background With advances in DNA re-sequencing methods and Next-Generation parallel sequencing approaches, there has been a large increase in genomic efforts to define and analyze the sequence variability present among individuals within a species. For very polymorphic species such as maize, this has lead to a need for intuitive, user-friendly software that aids the biologist, often with naïve programming capability, in tracking, editing, displaying, and exporting multiple individual sequence alignments. To fill this need we have developed a novel DNA alignment editor. Results We have generated a nucleotide sequence alignment editor (DNAAlignEditor) that provides an intuitive, user-friendly interface for manual editing of multiple sequence alignments with functions for input, editing, and output of sequence alignments. The color-coding of nucleotide identity and the display of associated quality score aids in the manual alignment editing process. DNAAlignEditor works as a client/server tool having two main components: a relational database that collects the processed alignments and a user interface connected to database through universal data access connectivity drivers. DNAAlignEditor can be used either as a stand-alone application or as a network application with multiple users concurrently connected. Conclusion We anticipate that this software will be of general interest to biologists and population genetics in editing DNA sequence alignments and analyzing natural sequence variation regardless of species, and will be particularly useful for manual alignment editing of sequences in species with high levels of polymorphism. PMID:18366684

  13. Liquid crystal alignment in cylindrical microcapillaries

    NASA Astrophysics Data System (ADS)

    Chychłowski, M.; Yaroshchuk, O.; Kravchuk, R.; Woliński, T.

    2011-09-01

    A variety of alignment configurations of liquid crystals (LCs) inside the glassy cylindrical capillaries is realized by using alignment materials providing different anchoring. The radial configuration with central disclination line is obtained for homeotropic boundary conditions. In turn, the axial, transversal and tilted alignment structures are realized by using materials for planar anchoring. The uniformity and controlling of the latter structures were provided by photoalignment method. This approach can be further used to control LC alignment in the photonic crystal fibers recognized as advanced elements for different optical devices.

  14. Liquid crystal alignment in cylindrical microcapillaries

    NASA Astrophysics Data System (ADS)

    Chychłowski, M.; Yaroshchuk, O.; Kravchuk, R.; Woliński, T.

    2012-03-01

    A variety of alignment configurations of liquid crystals (LCs) inside the glassy cylindrical capillaries is realized by using alignment materials providing different anchoring. The radial configuration with central disclination line is obtained for homeotropic boundary conditions. In turn, the axial, transversal and tilted alignment structures are realized by using materials for planar anchoring. The uniformity and controlling of the latter structures were provided by photoalignment method. This approach can be further used to control LC alignment in the photonic crystal fibers recognized as advanced elements for different optical devices.

  15. Anisotropic light emission from aligned luminophores

    NASA Astrophysics Data System (ADS)

    Verbunt, Paul P. C.; de Jong, Ties M.; de Boer, Dick K. G.; Broer, Dirk J.; Debije, Michael G.

    2014-07-01

    The emission of aligned dichroic dyes in a luminescent solar concentrator (LSC) illuminated from one side with collimated light results in a non-isotropic light distribution. We develop a model to describe emission profiles for dichroic dyes aligned at a general tilt angle with respect to a lightguide surface (including planar and homeotropic alignments) for various order parameters. We compare calculations with experimental results, demonstrating the dichroic nature of the dyes can have significant impact on the surface loss of luminescent solar concentrators. Including this dichroic nature is essential in correctly simulating the preferred edge emissions demonstrated experimentally in dyes aligned planarly on the surface of a lightguide.

  16. Optimal Network Alignment with Graphlet Degree Vectors

    PubMed Central

    Milenković, Tijana; Ng, Weng Leong; Hayes, Wayne; Pržulj, Nataša

    2010-01-01

    Important biological information is encoded in the topology of biological networks. Comparative analyses of biological networks are proving to be valuable, as they can lead to transfer of knowledge between species and give deeper insights into biological function, disease, and evolution. We introduce a new method that uses the Hungarian algorithm to produce optimal global alignment between two networks using any cost function. We design a cost function based solely on network topology and use it in our network alignment. Our method can be applied to any two networks, not just biological ones, since it is based only on network topology. We use our new method to align protein-protein interaction networks of two eukaryotic species and demonstrate that our alignment exposes large and topologically complex regions of network similarity. At the same time, our alignment is biologically valid, since many of the aligned protein pairs perform the same biological function. From the alignment, we predict function of yet unannotated proteins, many of which we validate in the literature. Also, we apply our method to find topological similarities between metabolic networks of different species and build phylogenetic trees based on our network alignment score. The phylogenetic trees obtained in this way bear a striking resemblance to the ones obtained by sequence alignments. Our method detects topologically similar regions in large networks that are statistically significant. It does this independent of protein sequence or any other information external to network topology. PMID:20628593

  17. Triangular Alignment (TAME). A Tensor-based Approach for Higher-order Network Alignment

    SciTech Connect

    Mohammadi, Shahin; Gleich, David F.; Kolda, Tamara G.; Grama, Ananth

    2015-11-01

    Network alignment is an important tool with extensive applications in comparative interactomics. Traditional approaches aim to simultaneously maximize the number of conserved edges and the underlying similarity of aligned entities. We propose a novel formulation of the network alignment problem that extends topological similarity to higher-order structures and provide a new objective function that maximizes the number of aligned substructures. This objective function corresponds to an integer programming problem, which is NP-hard. Consequently, we approximate this objective function as a surrogate function whose maximization results in a tensor eigenvalue problem. Based on this formulation, we present an algorithm called Triangular AlignMEnt (TAME), which attempts to maximize the number of aligned triangles across networks. We focus on alignment of triangles because of their enrichment in complex networks; however, our formulation and resulting algorithms can be applied to general motifs. Using a case study on the NAPABench dataset, we show that TAME is capable of producing alignments with up to 99% accuracy in terms of aligned nodes. We further evaluate our method by aligning yeast and human interactomes. Our results indicate that TAME outperforms the state-of-art alignment methods both in terms of biological and topological quality of the alignments.

  18. GramAlign: fast alignment driven by grammar-based phylogeny.

    PubMed

    Russell, David J

    2014-01-01

    Multiple sequence alignment involves identifying related subsequences among biological sequences. When matches are found, the associated pieces are shifted so that when sequences are presented as successive rows-one sequence per row-homologous residues line-up in columns. Exact alignment of more than a few sequences is known to be computationally prohibitive. Thus many heuristic algorithms have been developed to produce good alignments in an efficient amount of time by determining an order by which pairs of sequences are progressively aligned and merged. GRAMALIGN is such a progressive alignment algorithm that uses a grammar-based relative complexity distance metric to determine the alignment order. This technique allows for a computationally efficient and scalable program useful for aligning both large numbers of sequences and sets of long sequences quickly. The GRAMALIGN software is available at http://bioinfo.unl.edu/gramalign.php for both source code download and a web-based alignment server.

  19. GASSST: global alignment short sequence search tool

    PubMed Central

    Rizk, Guillaume; Lavenier, Dominique

    2010-01-01

    Motivation: The rapid development of next-generation sequencing technologies able to produce huge amounts of sequence data is leading to a wide range of new applications. This triggers the need for fast and accurate alignment software. Common techniques often restrict indels in the alignment to improve speed, whereas more flexible aligners are too slow for large-scale applications. Moreover, many current aligners are becoming inefficient as generated reads grow ever larger. Our goal with our new aligner GASSST (Global Alignment Short Sequence Search Tool) is thus 2-fold—achieving high performance with no restrictions on the number of indels with a design that is still effective on long reads. Results: We propose a new efficient filtering step that discards most alignments coming from the seed phase before they are checked by the costly dynamic programming algorithm. We use a carefully designed series of filters of increasing complexity and efficiency to quickly eliminate most candidate alignments in a wide range of configurations. The main filter uses a precomputed table containing the alignment score of short four base words aligned against each other. This table is reused several times by a new algorithm designed to approximate the score of the full dynamic programming algorithm. We compare the performance of GASSST against BWA, BFAST, SSAHA2 and PASS. We found that GASSST achieves high sensitivity in a wide range of configurations and faster overall execution time than other state-of-the-art aligners. Availability: GASSST is distributed under the CeCILL software license at http://www.irisa.fr/symbiose/projects/gassst/ Contact: guillaume.rizk@irisa.fr; dominique.lavenier@irisa.fr Supplementary information: Supplementary data are available at Bioinformatics online. PMID:20739310

  20. Alignments between galaxies, satellite systems and haloes

    NASA Astrophysics Data System (ADS)

    Shao, Shi; Cautun, Marius; Frenk, Carlos S.; Gao, Liang; Crain, Robert A.; Schaller, Matthieu; Schaye, Joop; Theuns, Tom

    2016-08-01

    The spatial distribution of the satellite populations of the Milky Way and Andromeda are puzzling in that they are nearly perpendicular to the discs of their central galaxies. To understand the origin of such configurations we study the alignment of the central galaxy, satellite system and dark matter halo in the largest of the `Evolution and Assembly of GaLaxies and their Environments' (EAGLE) simulation. We find that centrals and their satellite systems tend to be well aligned with their haloes, with a median misalignment angle of 33° in both cases. While the centrals are better aligned with the inner 10 kpc halo, the satellite systems are better aligned with the entire halo indicating that satellites preferentially trace the outer halo. The central-satellite alignment is weak (median misalignment angle of 52°) and we find that around 20 per cent of systems have a misalignment angle larger than 78°, which is the value for the Milky Way. The central-satellite alignment is a consequence of the tendency of both components to align with the dark matter halo. As a consequence, when the central is parallel to the satellite system, it also tends to be parallel to the halo. In contrast, if the central is perpendicular to the satellite system, as in the case of the Milky Way and Andromeda, then the central-halo alignment is much weaker. Dispersion-dominated (spheroidal) centrals have a stronger alignment with both their halo and their satellites than rotation-dominated (disc) centrals. We also found that the halo, the central galaxy and the satellite system tend to be aligned with the surrounding large-scale distribution of matter, with the halo being the better aligned of the three.

  1. Instructional Alignment under No Child Left Behind

    ERIC Educational Resources Information Center

    Polikoff, Morgan S.

    2012-01-01

    The alignment of instruction with the content of standards and assessments is the key mediating variable separating the policy of standards-based reform (SBR) from the outcome of improved student achievement. Few studies have investigated SBR's effects on instructional alignment, and most have serious methodological limitations. This research uses…

  2. X-ray determination of parts alignment

    NASA Technical Reports Server (NTRS)

    Nelson, C. W.

    1985-01-01

    A method for determining the alignment of adjoining metal objects is provided. The method comprises producing an X-ray image of adjoining surfaces of the two metal objects. The X-ray beam is tangential to the point the surfaces are joined. The method is particularly applicable where the alignment of the two metal objects is not readily susceptible to visual inspection.

  3. Phylogenetic Inference From Conserved sites Alignments

    SciTech Connect

    grundy, W.N.; Naylor, G.J.P.

    1999-08-15

    Molecular sequences provide a rich source of data for inferring the phylogenetic relationships among species. However, recent work indicates that even an accurate multiple alignment of a large sequence set may yield an incorrect phylogeny and that the quality of the phylogenetic tree improves when the input consists only of the highly conserved, motif regions of the alignment. This work introduces two methods of producing multiple alignments that include only the conserved regions of the initial alignment. The first method retains conserved motifs, whereas the second retains individual conserved sites in the initial alignment. Using parsimony analysis on a mitochondrial data set containing 19 species among which the phylogenetic relationships are widely accepted, both conserved alignment methods produce better phylogenetic trees than the complete alignment. Unlike any of the 19 inference methods used before to analyze this data, both methods produce trees that are completely consistent with the known phylogeny. The motif-based method employs far fewer alignment sites for comparable error rates. For a larger data set containing mitochondrial sequences from 39 species, the site-based method produces a phylogenetic tree that is largely consistent with known phylogenetic relationships and suggests several novel placements.

  4. Evaluating Alignment between Curriculum, Assessment, and Instruction

    ERIC Educational Resources Information Center

    Martone, Andrea; Sireci, Stephen G.

    2009-01-01

    The authors (a) discuss the importance of alignment for facilitating proper assessment and instruction, (b) describe the three most common methods for evaluating the alignment between state content standards and assessments, (c) discuss the relative strengths and limitations of these methods, and (d) discuss examples of applications of each…

  5. Alignment Nashville. Complementary Learning in Action

    ERIC Educational Resources Information Center

    Bouffard, Suzanne; Malone, Helen

    2007-01-01

    This profile illustrates how Alignment Nashville brings together diverse community members and organizations to leverage existing resources in support of Nashville's youth and the Metro Nashville Public Schools. In addition to a diversified funding structure, Alignment leaders point to three factors that have helped them get the effort off the…

  6. Precision aligned split V-block

    DOEpatents

    George, Irwin S.

    1984-01-01

    A precision aligned split V-block for holding a workpiece during a milling operation having an expandable frame for allowing various sized workpieces to be accommodated, is easily secured directly to the mill table and having key lugs in one base of the split V-block that assures constant alignment.

  7. Achieving Organisational Change through Values Alignment

    ERIC Educational Resources Information Center

    Branson, Christopher M.

    2008-01-01

    Purpose: The purpose of this paper is to, first, establish the interdependency between the successful achievement of organisational change and the attainment of values alignment within an organisation's culture and then, second, to describe an effective means for attaining such values alignment. Design/methodology/approach: Literature from the…

  8. Partial Automated Alignment and Integration System

    NASA Technical Reports Server (NTRS)

    Kelley, Gary Wayne (Inventor)

    2014-01-01

    The present invention is a Partial Automated Alignment and Integration System (PAAIS) used to automate the alignment and integration of space vehicle components. A PAAIS includes ground support apparatuses, a track assembly with a plurality of energy-emitting components and an energy-receiving component containing a plurality of energy-receiving surfaces. Communication components and processors allow communication and feedback through PAAIS.

  9. CARNA--alignment of RNA structure ensembles.

    PubMed

    Sorescu, Dragos Alexandru; Möhl, Mathias; Mann, Martin; Backofen, Rolf; Will, Sebastian

    2012-07-01

    Due to recent algorithmic progress, tools for the gold standard of comparative RNA analysis, namely Sankoff-style simultaneous alignment and folding, are now readily applicable. Such approaches, however, compare RNAs with respect to a simultaneously predicted, single, nested consensus structure. To make multiple alignment of RNAs available in cases, where this limitation of the standard approach is critical, we introduce a web server that provides a complete and convenient interface to the RNA structure alignment tool 'CARNA'. This tool uniquely supports RNAs with multiple conserved structures per RNA and aligns pseudoknots intrinsically; these features are highly desirable for aligning riboswitches, RNAs with conserved folding pathways, or pseudoknots. We represent structural input and output information as base pair probability dot plots; this provides large flexibility in the input, ranging from fixed structures to structure ensembles, and enables immediate visual analysis of the results. In contrast to conventional Sankoff-style approaches, 'CARNA' optimizes all structural similarities in the input simultaneously, for example across an entire RNA structure ensemble. Even compared with already costly Sankoff-style alignment, 'CARNA' solves an intrinsically much harder problem by applying advanced, constraint-based, algorithmic techniques. Although 'CARNA' is specialized to the alignment of RNAs with several conserved structures, its performance on RNAs in general is on par with state-of-the-art general-purpose RNA alignment tools, as we show in a Bralibase 2.1 benchmark. The web server is freely available at http://rna.informatik.uni-freiburg.de/CARNA. PMID:22689637

  10. On comparing two structured RNA multiple alignments.

    PubMed

    Patel, Vandanaben; Wang, Jason T L; Setia, Shefali; Verma, Anurag; Warden, Charles D; Zhang, Kaizhong

    2010-12-01

    We present a method, called BlockMatch, for aligning two blocks, where a block is an RNA multiple sequence alignment with the consensus secondary structure of the alignment in Stockholm format. The method employs a quadratic-time dynamic programming algorithm for aligning columns and column pairs of the multiple alignments in the blocks. Unlike many other tools that can perform pairwise alignment of either single sequences or structures only, BlockMatch takes into account the characteristics of all the sequences in the blocks along with their consensus structures during the alignment process, thus being able to achieve a high-quality alignment result. We apply BlockMatch to phylogeny reconstruction on a set of 5S rRNA sequences taken from fifteen bacteria species. Experimental results showed that the phylogenetic tree generated by our method is more accurate than the tree constructed based on the widely used ClustalW tool. The BlockMatch algorithm is implemented into a web server, accessible at http://bioinformatics.njit.edu/blockmatch. A jar file of the program is also available for download from the web server. PMID:21121021

  11. Nonvisual Cues for Aligning to Cross Streets

    ERIC Educational Resources Information Center

    Scott, Alan C.; Barlow, Janet M.; Guth, David A.; Bentzen, Billie Louise; Cunningham, Christopher M.; Long, Richard

    2011-01-01

    Accurately aligning to a crosswalk is an important component of safe street crossing for pedestrians who are blind. Six alignment cues were evaluated in a simulated crosswalk environment in which the angle of the crosswalk was not always in line with the slope of the ramp. The effectiveness of each cue is reported and implications are discussed.…

  12. Evaluating Content Alignment in Computerized Adaptive Testing

    ERIC Educational Resources Information Center

    Wise, Steven L.; Kingsbury, G. Gage; Webb, Norman L.

    2015-01-01

    The alignment between a test and the content domain it measures represents key evidence for the validation of test score inferences. Although procedures have been developed for evaluating the content alignment of linear tests, these procedures are not readily applicable to computerized adaptive tests (CATs), which require large item pools and do…

  13. Compositions for directed alignment of conjugated polymers

    DOEpatents

    Kim, Jinsang; Kim, Bong-Gi; Jeong, Eun Jeong

    2016-04-19

    Conjugated polymers (CPs) achieve directed alignment along an applied flow field and a dichroic ratio of as high as 16.67 in emission from well-aligned thin films and fully realized anisotropic optoelectronic properties of CPs in field-effect transistor (FET).

  14. Probabilistic sequence alignment of stratigraphic records

    NASA Astrophysics Data System (ADS)

    Lin, Luan; Khider, Deborah; Lisiecki, Lorraine E.; Lawrence, Charles E.

    2014-10-01

    The assessment of age uncertainty in stratigraphically aligned records is a pressing need in paleoceanographic research. The alignment of ocean sediment cores is used to develop mutually consistent age models for climate proxies and is often based on the δ18O of calcite from benthic foraminifera, which records a global ice volume and deep water temperature signal. To date, δ18O alignment has been performed by manual, qualitative comparison or by deterministic algorithms. Here we present a hidden Markov model (HMM) probabilistic algorithm to find 95% confidence bands for δ18O alignment. This model considers the probability of every possible alignment based on its fit to the δ18O data and transition probabilities for sedimentation rate changes obtained from radiocarbon-based estimates for 37 cores. Uncertainty is assessed using a stochastic back trace recursion to sample alignments in exact proportion to their probability. We applied the algorithm to align 35 late Pleistocene records to a global benthic δ18O stack and found that the mean width of 95% confidence intervals varies between 3 and 23 kyr depending on the resolution and noisiness of the record's δ18O signal. Confidence bands within individual cores also vary greatly, ranging from ~0 to >40 kyr. These alignment uncertainty estimates will allow researchers to examine the robustness of their conclusions, including the statistical evaluation of lead-lag relationships between events observed in different cores.

  15. On comparing two structured RNA multiple alignments.

    PubMed

    Patel, Vandanaben; Wang, Jason T L; Setia, Shefali; Verma, Anurag; Warden, Charles D; Zhang, Kaizhong

    2010-12-01

    We present a method, called BlockMatch, for aligning two blocks, where a block is an RNA multiple sequence alignment with the consensus secondary structure of the alignment in Stockholm format. The method employs a quadratic-time dynamic programming algorithm for aligning columns and column pairs of the multiple alignments in the blocks. Unlike many other tools that can perform pairwise alignment of either single sequences or structures only, BlockMatch takes into account the characteristics of all the sequences in the blocks along with their consensus structures during the alignment process, thus being able to achieve a high-quality alignment result. We apply BlockMatch to phylogeny reconstruction on a set of 5S rRNA sequences taken from fifteen bacteria species. Experimental results showed that the phylogenetic tree generated by our method is more accurate than the tree constructed based on the widely used ClustalW tool. The BlockMatch algorithm is implemented into a web server, accessible at http://bioinformatics.njit.edu/blockmatch. A jar file of the program is also available for download from the web server.

  16. Automated interferometric alignment system for paraboloidal mirrors

    DOEpatents

    Maxey, L. Curtis

    1993-01-01

    A method is described for a systematic method of interpreting interference fringes obtained by using a corner cube retroreflector as an alignment aid when aigning a paraboloid to a spherical wavefront. This is applicable to any general case where such alignment is required, but is specifically applicable in the case of aligning an autocollimating test using a diverging beam wavefront. In addition, the method provides information which can be systematically interpreted such that independent information about pitch, yaw and focus errors can be obtained. Thus, the system lends itself readily to automation. Finally, although the method is developed specifically for paraboloids, it can be seen to be applicable to a variety of other aspheric optics when applied in combination with a wavefront corrector that produces a wavefront which, when reflected from the correctly aligned aspheric surface will produce a collimated wavefront like that obtained from the paraboloid when it is correctly aligned to a spherical wavefront.

  17. Relaxation of Liquid Crystal Alignment Layers

    NASA Astrophysics Data System (ADS)

    Rich, David C.; Sichel, Enid K.; Cebe, Peggy

    1997-03-01

    A new method for investigating thermophysical transitions in liquid crystal alignment layers is discussed. The technique involves curing a set of alignment films at an array of temperatures after the films have been brushed with a cloth, but before liquid crystal cells are constructed from the films. When a thermal transition in the polymer is initiated by a post-brush cure, the aligning ability of the brushed films is destroyed. The technique is demonstrated using polyamide- imide, PMDA-APB polyimide, poly(phenylene ether sulfide) and PVA poly(vinyl alcohol) alignment films. The technique is advantageous for examining brush-aligned surfaces which, due to surface roughness, can not be examined using conventional ellipsometry .

  18. Vane segment support and alignment device

    DOEpatents

    McLaurin, L.D.; Sizemore, J.D.

    1999-07-13

    A support and alignment assembly for supporting and aligning a vane segment is provided. The support and alignment assembly comprises a torque plate which defines an opening for receiving an eccentric pin and a locking end member for receiving a lock socket member. An eccentric pin adjustably supported by the torque plate opening for supporting and aligning a vane segment is provided. A lock socket member adapted to securely receive the eccentric pin and rotated therewith, and adjustably engage the torque plate locking end is provided. The lock socket member receives the eccentric pin, such that when the eccentric pin is adjusted to align the vane segment, the lock socket member engages the torque plate locking end to secure the vane segment in the desired position. 5 figs.

  19. Vane segment support and alignment device

    DOEpatents

    McLaurin, Leroy Dixon; Sizemore, John Derek

    1999-01-01

    A support and alignment assembly for supporting and aligning a vane segment is provided. The support and alignment assembly comprises a torque plate which defines an opening for receiving an eccentric pin and a locking end member for receiving a lock socket member. An eccentric pin adjustably supported by the torque plate opening for supporting and aligning a vane segment is provided. A lock socket member adapted to securely receive the eccentric pin and rotated therewith, and adjustably engage the torque plate locking end is provided. The lock socket member receives the eccentric pin, such that when the eccentric pin is adjusted to align the vane segment, the lock socket member engages the torque plate locking end to secure the vane segment in the desired position.

  20. Alignment algorithm for homology modeling and threading.

    PubMed Central

    Alexandrov, N. N.; Luethy, R.

    1998-01-01

    A DNA/protein sequence comparison is a popular computational tool for molecular biologists. Finding a good alignment implies an evolutionary and/or functional relationship between proteins or genomic loci. Sequential similarity between two proteins indicates their structural resemblance, providing a practical approach for structural modeling, when structure of one of these proteins is known. The first step in the homology modeling is a construction of an accurate sequence alignment. The commonly used alignment algorithms do not provide an adequate treatment of the structurally mismatched residues in locally dissimilar regions. We propose a simple modification of the existing alignment algorithm which treats these regions properly and demonstrate how this modification improves sequence alignments in real proteins. PMID:9521100

  1. Aligning Greek-English parallel texts

    NASA Astrophysics Data System (ADS)

    Galiotou, Eleni; Koronakis, George; Lazari, Vassiliki

    2015-02-01

    In this paper, we discuss issues concerning the alignment of parallel texts written in languages with different alphabets based on an experiment of aligning texts from the proceedings of the European Parliament in Greek and English. First, we describe our implementation of the k-vec algorithm and its application to the bilingual corpus. Then the output of the algorithm is used as a starting point for an alignment procedure at a sentence level which also takes into account mark-ups of meta-information. The results of the implementation are compared to those of the application of the Church and Gale alignment algorithm on the Europarl corpus. The conclusions of this comparison can give useful insights as for the efficiency of alignment algorithms when applied to the particular bilingual corpus.

  2. An algorithm for linear metabolic pathway alignment.

    PubMed

    Chen, Ming; Hofestaedt, Ralf

    2005-01-01

    Metabolic pathway alignment represents one of the most powerful tools for comparative analysis of metabolism. It involves recognition of metabolites common to a set of functionally-related metabolic pathways, interpretation of biological evolution processes and determination of alternative metabolic pathways. Moreover, it is of assistance in function prediction and metabolism modeling. Although research on genomic sequence alignment is extensive, the problem of aligning metabolic pathways has received less attention. We are motivated to develop an algorithm of metabolic pathway alignment to reveal the similarities between metabolic pathways. A new definition of the metabolic pathway is introduced. The algorithm has been implemented into the PathAligner system; its web-based interface is available at http://bibiserv.techfak.uni-bielefeld.de/pathaligner/.

  3. Structural Alignment Sensor Feasibility Demonstration

    NASA Technical Reports Server (NTRS)

    Anderson, R. H.; Huang, C. C.; Hodor, J. R.

    1978-01-01

    A structural alignment sensor (SAS) was developed for use with large deployable antenna systems for contour measurement and/or active control. The SAS is a laser ranging system using frequency modulation and accurate phase measurement to determine distance. Work was done with a CO2 and HeNe laser. The capability of the SAS to measure antenna rib contours was studied over ranges of 50 meters to a resolution of 100 microns. Initial resolution data was taken with the CO2 system. This data shows that it will indeed meet the SAS requirements. The development of the HeNe system was initiated because it offers substantial improvement in size, weight, and power over the CO2 system. The final demonstration was made with the HeNe system and it too showed that the SAS requirements could be met with this alternate approach. The projection of these results to a conceptual design for a flight system and its application are described.

  4. Grain alignment by ferromagnetic impurities

    NASA Technical Reports Server (NTRS)

    Mathis, J. S.

    1986-01-01

    The observed wavelength dependence of linear polarization, and its variation from region to region can be explained by the following assumptions. Interstellar grains resemble interplanetary grains, in that they are composed of collections of small particles coagulated together into elongated masses. A fraction of the small particles are ferromagnetic. Presumably these are either metallic Fe or magnetite, Fe3O4. If and only if a large grain contains one or more magnetic particles is the grain aligned in the galactic magnetic field. The magnetic particles stick only to silicate grains because of chemical similarities, or (equivalently) any pure carbon grains in the diffuse interstellar medium (ISM) are too spherical to produce polarization. Grains in dense regions, such as the outer parts of molecular clouds, are larger than those in the diffuse ISM because of coagulation of the grains rather than accretion of icy mantles. These regions are known to have larger than normal values of lambda (max), the wavelength of the maximum of linear polarization. The above assumptions are sufficient to allow the calculation of the wavelength dependence of the polarization.

  5. R3D Align: global pairwise alignment of RNA 3D structures using local superpositions

    PubMed Central

    Rahrig, Ryan R.; Leontis, Neocles B.; Zirbel, Craig L.

    2010-01-01

    Motivation: Comparing 3D structures of homologous RNA molecules yields information about sequence and structural variability. To compare large RNA 3D structures, accurate automatic comparison tools are needed. In this article, we introduce a new algorithm and web server to align large homologous RNA structures nucleotide by nucleotide using local superpositions that accommodate the flexibility of RNA molecules. Local alignments are merged to form a global alignment by employing a maximum clique algorithm on a specially defined graph that we call the ‘local alignment’ graph. Results: The algorithm is implemented in a program suite and web server called ‘R3D Align’. The R3D Align alignment of homologous 3D structures of 5S, 16S and 23S rRNA was compared to a high-quality hand alignment. A full comparison of the 16S alignment with the other state-of-the-art methods is also provided. The R3D Align program suite includes new diagnostic tools for the structural evaluation of RNA alignments. The R3D Align alignments were compared to those produced by other programs and were found to be the most accurate, in comparison with a high quality hand-crafted alignment and in conjunction with a series of other diagnostics presented. The number of aligned base pairs as well as measures of geometric similarity are used to evaluate the accuracy of the alignments. Availability: R3D Align is freely available through a web server http://rna.bgsu.edu/R3DAlign. The MATLAB source code of the program suite is also freely available for download at that location. Supplementary information: Supplementary data are available at Bioinformatics online. Contact: r-rahrig@onu.edu PMID:20929913

  6. Algorithms for Automatic Alignment of Arrays

    NASA Technical Reports Server (NTRS)

    Chatterjee, Siddhartha; Gilbert, John R.; Oliker, Leonid; Schreiber, Robert; Sheffler, Thomas J.

    1996-01-01

    Aggregate data objects (such as arrays) are distributed across the processor memories when compiling a data-parallel language for a distributed-memory machine. The mapping determines the amount of communication needed to bring operands of parallel operations into alignment with each other. A common approach is to break the mapping into two stages: an alignment that maps all the objects to an abstract template, followed by a distribution that maps the template to the processors. This paper describes algorithms for solving the various facets of the alignment problem: axis and stride alignment, static and mobile offset alignment, and replication labeling. We show that optimal axis and stride alignment is NP-complete for general program graphs, and give a heuristic method that can explore the space of possible solutions in a number of ways. We show that some of these strategies can give better solutions than a simple greedy approach proposed earlier. We also show how local graph contractions can reduce the size of the problem significantly without changing the best solution. This allows more complex and effective heuristics to be used. We show how to model the static offset alignment problem using linear programming, and we show that loop-dependent mobile offset alignment is sometimes necessary for optimum performance. We describe an algorithm with for determining mobile alignments for objects within do loops. We also identify situations in which replicated alignment is either required by the program itself or can be used to improve performance. We describe an algorithm based on network flow that replicates objects so as to minimize the total amount of broadcast communication in replication.

  7. A statistical algorithm for assessing cellular alignment.

    PubMed

    Nectow, Alexander R; Gil, Eun Seok; Kaplan, David L; Kilmer, Misha E

    2013-03-01

    Current statistical techniques for analyzing cellular alignment data in the fields of biomaterials and tissue engineering are limited because of heuristic and less quantitative approaches. For example, generally a cutoff degree limit (commonly 20 degrees) is arbitrarily defined within which cells are considered "aligned." The effectiveness of a patterned biomaterial in guiding the alignment of cells, such as neurons, is often critical to predict relationships between the biomaterial design and biological outcomes, both in vitro and in vivo. This becomes particularly important in the case of peripheral neurons, which require precise axon guidance to obtain successful regenerative outcomes. To address this issue, we have developed a protocol for processing cellular alignment data sets, which implicitly determines an "angle of alignment." This was accomplished as follows: cells "aligning" with an underlying, anisotropic scaffold display uniformly distributed angles up to a cutoff point determined by how effective the biomaterial is in aligning cells. Therefore, this fact was then used to determine where an alignment angle data set diverges from a uniform distribution. This was accomplished by measuring the spacing between the collected, increasingly ordered angles and analyzing their underlying distributions using a normalized cumulative periodogram criterion. The proposed protocol offers a novel way to implicitly define cellular alignment, with respect to various anisotropic biomaterials. This method may also offer an alternative to assess cellular alignment, which could offer improved predictive measures related to biological outcomes. Furthermore, the approach described can be used for a broad range of cell types grown on 2D surfaces, but would not be applicable to 3D scaffold systems in the present format.

  8. An Improved Inertial Frame Alignment Algorithm Based on Horizontal Alignment Information for Marine SINS.

    PubMed

    Che, Yanting; Wang, Qiuying; Gao, Wei; Yu, Fei

    2015-01-01

    In this paper, an improved inertial frame alignment algorithm for a marine SINS under mooring conditions is proposed, which significantly improves accuracy. Since the horizontal alignment is easy to complete, and a characteristic of gravity is that its component in the horizontal plane is zero, we use a clever method to improve the conventional inertial alignment algorithm. Firstly, a large misalignment angle model and a dimensionality reduction Gauss-Hermite filter are employed to establish the fine horizontal reference frame. Based on this, the projection of the gravity in the body inertial coordinate frame can be calculated easily. Then, the initial alignment algorithm is accomplished through an inertial frame alignment algorithm. The simulation and experiment results show that the improved initial alignment algorithm performs better than the conventional inertial alignment algorithm, and meets the accuracy requirements of a medium-accuracy marine SINS.

  9. Pin-Align: A New Dynamic Programming Approach to Align Protein-Protein Interaction Networks

    PubMed Central

    2014-01-01

    To date, few tools for aligning protein-protein interaction networks have been suggested. These tools typically find conserved interaction patterns using various local or global alignment algorithms. However, the improvement of the speed, scalability, simplification, and accuracy of network alignment tools is still the target of new researches. In this paper, we introduce Pin-Align, a new tool for local alignment of protein-protein interaction networks. Pin-Align accuracy is tested on protein interaction networks from IntAct, DIP, and the Stanford Network Database and the results are compared with other well-known algorithms. It is shown that Pin-Align has higher sensitivity and specificity in terms of KEGG Ortholog groups. PMID:25435900

  10. An Improved Inertial Frame Alignment Algorithm Based on Horizontal Alignment Information for Marine SINS

    PubMed Central

    Che, Yanting; Wang, Qiuying; Gao, Wei; Yu, Fei

    2015-01-01

    In this paper, an improved inertial frame alignment algorithm for a marine SINS under mooring conditions is proposed, which significantly improves accuracy. Since the horizontal alignment is easy to complete, and a characteristic of gravity is that its component in the horizontal plane is zero, we use a clever method to improve the conventional inertial alignment algorithm. Firstly, a large misalignment angle model and a dimensionality reduction Gauss-Hermite filter are employed to establish the fine horizontal reference frame. Based on this, the projection of the gravity in the body inertial coordinate frame can be calculated easily. Then, the initial alignment algorithm is accomplished through an inertial frame alignment algorithm. The simulation and experiment results show that the improved initial alignment algorithm performs better than the conventional inertial alignment algorithm, and meets the accuracy requirements of a medium-accuracy marine SINS. PMID:26445048

  11. Face Alignment via Regressing Local Binary Features.

    PubMed

    Ren, Shaoqing; Cao, Xudong; Wei, Yichen; Sun, Jian

    2016-03-01

    This paper presents a highly efficient and accurate regression approach for face alignment. Our approach has two novel components: 1) a set of local binary features and 2) a locality principle for learning those features. The locality principle guides us to learn a set of highly discriminative local binary features for each facial landmark independently. The obtained local binary features are used to jointly learn a linear regression for the final output. This approach achieves the state-of-the-art results when tested on the most challenging benchmarks to date. Furthermore, because extracting and regressing local binary features are computationally very cheap, our system is much faster than previous methods. It achieves over 3000 frames per second (FPS) on a desktop or 300 FPS on a mobile phone for locating a few dozens of landmarks. We also study a key issue that is important but has received little attention in the previous research, which is the face detector used to initialize alignment. We investigate several face detectors and perform quantitative evaluation on how they affect alignment accuracy. We find that an alignment friendly detector can further greatly boost the accuracy of our alignment method, reducing the error up to 16% relatively. To facilitate practical usage of face detection/alignment methods, we also propose a convenient metric to measure how good a detector is for alignment initialization.

  12. Sparse alignment for robust tensor learning.

    PubMed

    Lai, Zhihui; Wong, Wai Keung; Xu, Yong; Zhao, Cairong; Sun, Mingming

    2014-10-01

    Multilinear/tensor extensions of manifold learning based algorithms have been widely used in computer vision and pattern recognition. This paper first provides a systematic analysis of the multilinear extensions for the most popular methods by using alignment techniques, thereby obtaining a general tensor alignment framework. From this framework, it is easy to show that the manifold learning based tensor learning methods are intrinsically different from the alignment techniques. Based on the alignment framework, a robust tensor learning method called sparse tensor alignment (STA) is then proposed for unsupervised tensor feature extraction. Different from the existing tensor learning methods, L1- and L2-norms are introduced to enhance the robustness in the alignment step of the STA. The advantage of the proposed technique is that the difficulty in selecting the size of the local neighborhood can be avoided in the manifold learning based tensor feature extraction algorithms. Although STA is an unsupervised learning method, the sparsity encodes the discriminative information in the alignment step and provides the robustness of STA. Extensive experiments on the well-known image databases as well as action and hand gesture databases by encoding object images as tensors demonstrate that the proposed STA algorithm gives the most competitive performance when compared with the tensor-based unsupervised learning methods. PMID:25291733

  13. Alignment Cube with One Diffractive Face

    NASA Technical Reports Server (NTRS)

    Ohl, Raymond G.; Sampler, Henry P.; Strojny, Carl R.; Hagopian, John G.; McMann, Joseph C.

    2006-01-01

    An enhanced alignment cube has been invented for use in a confined setting (e.g., a cryogenic chamber) in which optical access may be limited to a single line of sight. Whereas traditional alignment-cube practice entails the use of two theodolites aimed along two lines of sight, the enhanced alignment cube yields complete alignment information through use of a single theodolite aimed along a single line of sight. Typically, an alignment cube is placed in contact with a datum surface or other reference feature on a scientific instrument during assembly or testing of the instrument. The alignment cube is then used in measuring a small angular deviation of the feature from a precise required orientation. Commonly, the deviation is expressed in terms of rotations (Rx,Ry,Rz) of the cube about the corresponding Cartesian axes (x,y,z). In traditional practice, in order to measure all three rotations, it is necessary to use two theodolites aimed at two orthogonal faces of the alignment cube, as shown in the upper part of the figure. To be able to perform such a measurement, one needs optical access to these two faces. In the case of an alignment cube inside a cryogenic chamber or other enclosed space, the optical-access requirement translates to a requirement for two windows located along the corresponding two orthogonal lines of sight into the chamber. In a typical application, it is difficult or impossible to provide two windows. The present enhanced version of the alignment cube makes it possible to measure all three rotations by use of a single line of sight, thereby obviating a second window.

  14. HETDEX: VIRUS Spectrographs Assembly and Alignment

    NASA Astrophysics Data System (ADS)

    Prochaska, Travis; Marshall, J. L.; DePoy, D. L.; Boster, E.; Meador, W.; Allen, R.; Hill, G. J.; HETDEX Collaboration

    2012-01-01

    We describe the assembly and optical alignment process used to construct the Visual Integral-Field Replicable Unit Spectrograph (VIRUS) instrument. VIRUS is a set of 150+ optical spectrographs designed to support observations for the Hobby-Eberly Telescope Dark Energy Experiment (HETDEX). To meet the accuracy, interchangeability, time and cost constraints, a production line will be set up to construct and test modular subassemblies in parallel. To facilitate the VIRUS production, fixtures and adjustment mechanisms have been designed to aid in assembly and alignment. This poster describes the details and operations of the camera mirror, collimator mirror and grating adjustment mechanisms, as well as the fold flat mirror alignment fixture.

  15. Rotational Alignment Altered by Source Position Correlations

    NASA Technical Reports Server (NTRS)

    Jacobs, Chris S.; Heflin, M. B.; Lanyi, G. E.; Sovers, O. J.; Steppe, J. A.

    2010-01-01

    In the construction of modern Celestial Reference Frames (CRFs) the overall rotational alignment is only weakly constrained by the data. Therefore, common practice has been to apply a 3-dimensional No-Net-Rotation (NNR) constraint in order to align an under-construction frame to the ICRF. We present evidence that correlations amongst source position parameters must be accounted for in order to properly align a CRF at the 5-10 (mu)as level of uncertainty found in current work. Failure to do so creates errors at the 10-40 (mu)as level.

  16. Alignment of chirped-pulse compressor

    SciTech Connect

    Yakovlev, I V

    2012-11-30

    An original method of alignment of grating compressors for ultrahigh-power CPA laser systems is proposed. The use of this method for adjustment of the grating compressor of a PEARL subpetawatt laser complex made it possible to align the diffraction gratings with a second accuracy in all three angular degrees of freedom, including alignment of the grooves, and to adjust the angles of beam incidence on the grating with a high accuracy. A simple method for measuring the difference in the groove densities of gratings with accuracy better than 0.005 lines mm{sup -1} is proposed and tested. (control of laser radiation parameters)

  17. Global multiple protein-protein interaction network alignment by combining pairwise network alignments

    PubMed Central

    2015-01-01

    Background A wealth of protein interaction data has become available in recent years, creating an urgent need for powerful analysis techniques. In this context, the problem of finding biologically meaningful correspondences between different protein-protein interaction networks (PPIN) is of particular interest. The PPIN of a species can be compared with that of other species through the process of PPIN alignment. Such an alignment can provide insight into basic problems like species evolution and network component function determination, as well as translational problems such as target identification and elucidation of mechanisms of disease spread. Furthermore, multiple PPINs can be aligned simultaneously, expanding the analytical implications of the result. While there are several pairwise network alignment algorithms, few methods are capable of multiple network alignment. Results We propose SMAL, a MNA algorithm based on the philosophy of scaffold-based alignment. SMAL is capable of converting results from any global pairwise alignment algorithms into a MNA in linear time. Using this method, we have built multiple network alignments based on combining pairwise alignments from a number of publicly available (pairwise) network aligners. We tested SMAL using PPINs of eight species derived from the IntAct repository and employed a number of measures to evaluate performance. Additionally, as part of our experimental investigations, we compared the effectiveness of SMAL while aligning up to eight input PPINs, and examined the effect of scaffold network choice on the alignments. Conclusions A key advantage of SMAL lies in its ability to create MNAs through the use of pairwise network aligners for which native MNA implementations do not exist. Experiments indicate that the performance of SMAL was comparable to that of the native MNA implementation of established methods such as IsoRankN and SMETANA. However, in terms of computational time, SMAL was significantly faster

  18. Computing posterior probabilities for score-based alignments using ppALIGN.

    PubMed

    Wolfsheimer, Stefan; Hartmann, Alexander; Rabus, Ralf; Nuel, Gregory

    2012-01-01

    Score-based pairwise alignments are widely used in bioinformatics in particular with molecular database search tools, such as the BLAST family. Due to sophisticated heuristics, such algorithms are usually fast but the underlying scoring model unfortunately lacks a statistical description of the reliability of the reported alignments. In particular, close to gaps, in low-score or low-complexity regions, a huge number of alternative alignments arise which results in a decrease of the certainty of the alignment. ppALIGN is a software package that uses hidden Markov Model techniques to compute position-wise reliability of score-based pairwise alignments of DNA or protein sequences. The design of the model allows for a direct connection between the scoring function and the parameters of the probabilistic model. For this reason it is suitable to analyze the outcomes of popular score based aligners and search tools without having to choose a complicated set of parameters. By contrast, our program only requires the classical score parameters (the scoring function and gap costs). The package comes along with a library written in C++, a standalone program for user defined alignments (ppALIGN) and another program (ppBLAST) which can process a complete result set of BLAST. The main algorithms essentially exhibit a linear time complexity (in the alignment lengths), and they are hence suitable for on-line computations. We have also included alternative decoding algorithms to provide alternative alignments. ppALIGN is a fast program/library that helps detect and quantify questionable regions in pairwise alignments. Due to its structure, the input/output interface it can to be connected to other post-processing tools. Empirically, we illustrate its usefulness in terms of correctly predicted reliable regions for sequences generated using the ROSE model for sequence evolution, and identify sensor-specific regions in the denitrifying betaproteobacterium Aromatoleum aromaticum. PMID

  19. HETDEX: Optical Alignment Of The Virus Spectrographs

    NASA Astrophysics Data System (ADS)

    Martin, Emily; Marshall, J.; Rheault, J.; DePoy, D.; Prochaska, T.; Allen, R.; Hill, G.; HETDEX Collaboration

    2012-01-01

    We present an optical alignment procedure for the Visible Integral-Field Replicable Unit Spectrograph (VIRUS) collimator. Texas A&M is helping to build the VIRUS spectrographs, designed in collaboration with The University of Texas at Austin. The Hobby Eberly Telescope Dark Energy Experiment (HETDEX) will use as many as 192 units of this instrument to search for answers regarding Dark Energy. Texas A&M is currently assembling the collimators for VIRUS and designing alignment fixtures to aid in the assembly. We used ZEMAX models of VIRUS optics made by UT engineers to analyze various alignment methods we have considered. Our current plan uses two steps to properly align the collimator within the tolerance of 0.1-degrees. This will permit interchangeability among the various VIRUS parts.

  20. Alignment Stage for a Cryogenic Dilatometer

    NASA Technical Reports Server (NTRS)

    Dudik, Matthew; Moore, Donald

    2005-01-01

    A three-degree-of-freedom alignment stage has been designed and built for use in a cryogenic dilatometer that is used to measure thermal strains. The alignment stage enables precise adjustments of the positions and orientations of optical components to be used in the measurements and, once adjustments have been completed, keeps the components precisely aligned during cryogenic-dilatometer operations that can last as long as several days. The alignment stage includes a case, a circular tilt/tip platform, and a variety of flexural couplings between the case and the platform, all machined from a single block of the low-thermal-expansion iron/nickel alloy Invar, in order to minimize effects of temperature gradients and to obtain couplings that are free of stiction and friction. There are three sets of flexural couplings clocked at equal angles of 120 degrees around the platform, constituting a three-point kinematic support system.

  1. Training manual on optical alignment instruments

    NASA Technical Reports Server (NTRS)

    1968-01-01

    Training Manual RQA/M5 provides a basic course of instruction in the use of optical instruments for precise dimensional control and alignment of structural elements and assemblies, such as associated with space vehicles, aircraft, ships, and buildings.

  2. Magnetic alignment of the Tara tandem mirror

    SciTech Connect

    Post, R.S.; Coleman, J.W.; Irby, J.H.; Olmstead, M.M.; Torti, R.P.

    1985-06-01

    Techniques developed for the alignment of high-energy accelerators have been applied to the alignment of the Tara tandem mirror magnetic confinement device. Tools used were: a transit/laser surveyor's system for establishing an invariant reference; optical scattering from ferromagnetic crystallites for establishing magnetic centers in the quadrupole anchor/transition modules; an electron-optical circle-generating wand for alignment of the solenoidal plug and central cell modules; and four differently configured electron emissive probes, including a 40-beam flux mapping e gun, for testing the alignment of the coils under vacuum. Procedures are outlined, and results are given which show that the magnetic axes of the individual coils in the Tara set have been made colinear with each other and with the reference to within +- 1.0 mm over the length of the machine between the anchor midplanes.

  3. Alignment algorithms for planar optical waveguides

    NASA Astrophysics Data System (ADS)

    Zheng, Yu; Duan, Ji-an

    2012-10-01

    Planar optical waveguides are the key elements in a modern, high-speed optical network. An important problem facing the optical fiber communication system is optical-axis alignment and coupling between waveguide chips and transmission fibers. The advantages and disadvantages of the various algorithms used for the optical-axis alignment, namely, hill-climbing, pattern search, and genetic algorithm are analyzed. A new optical-axis alignment for planar optical waveguides is presented which is a composite of a genetic algorithm and a pattern search algorithm. Experiments have proved the proposed alignment's feasibility; compared with hill climbing, the search process can reduce the number of movements by 88% and reduce the search time by 83%. Moreover, the search success rate in the experiment can reach 100%.

  4. Automatic alignment method for calibration of hydrometers

    NASA Astrophysics Data System (ADS)

    Lee, Y. J.; Chang, K. H.; Chon, J. C.; Oh, C. Y.

    2004-04-01

    This paper presents a new method to automatically align specific scale-marks for the calibration of hydrometers. A hydrometer calibration system adopting the new method consists of a vision system, a stepping motor, and software to control the system. The vision system is composed of a CCD camera and a frame grabber, and is used to acquire images. The stepping motor moves the camera, which is attached to the vessel containing a reference liquid, along the hydrometer. The operating program has two main functions: to process images from the camera to find the position of the horizontal plane and to control the stepping motor for the alignment of the horizontal plane with a particular scale-mark. Any system adopting this automatic alignment method is a convenient and precise means of calibrating a hydrometer. The performance of the proposed method is illustrated by comparing the calibration results using the automatic alignment method with those obtained using the manual method.

  5. Aligning parallel arrays to reduce communication

    NASA Technical Reports Server (NTRS)

    Sheffler, Thomas J.; Schreiber, Robert; Gilbert, John R.; Chatterjee, Siddhartha

    1994-01-01

    Axis and stride alignment is an important optimization in compiling data-parallel programs for distributed-memory machines. We previously developed an optimal algorithm for aligning array expressions. Here, we examine alignment for more general program graphs. We show that optimal alignment is NP-complete in this setting, so we study heuristic methods. This paper makes two contributions. First, we show how local graph transformations can reduce the size of the problem significantly without changing the best solution. This allows more complex and effective heuristics to be used. Second, we give a heuristic that can explore the space of possible solutions in a number of ways. We show that some of these strategies can give better solutions than a simple greedy approach proposed earlier. Our algorithms have been implemented; we present experimental results showing their effect on the performance of some example programs running on the CM-5.

  6. Little solar impact from planets' alignment

    NASA Astrophysics Data System (ADS)

    Bell, Peter M.

    Contrary to some projections, planetary alignments of the type that have begun recently (when the sun, Venus, Earth, Jupiter, and Saturn move into almost perfect alignment) should have no perceptible effect on solar flare activity. Some researchers have postulated that the increased gravitational attraction exerted on the sun by the aligned planets could produce massive eruptions near sunspots. The radiation and particles directed earthward by the sun, according to this hypothesis, would change the atmosphere in a way that would slow the earth's rotation; and this change in rotation rate would cause the large plates which constitute the earth's crust to grind together more vigorously and cause major earthquakes. Because Jupiter is the largest of the planets, and so exerts the most gravitational attraction, this geophysical domino theory is sometimes referred to as the Jupiter Effect. But, at least at the solar end of this theory, one would not expect much change in solar activity from planetary alignments of this type.

  7. Fiber optics welder having movable aligning mirror

    DOEpatents

    Higgins, Robert W.; Robichaud, Roger E.

    1981-01-01

    A system for welding fiber optic waveguides together. The ends of the two fibers to be joined together are accurately, collinearly aligned in a vertical orientation and subjected to a controlled, diffuse arc to effect welding and thermal conditioning. A front-surfaced mirror mounted at a 45.degree. angle to the optical axis of a stereomicroscope mounted for viewing the junction of the ends provides two orthogonal views of the interface during the alignment operation.

  8. Pairwise alignment of protein interaction networks.

    PubMed

    Koyutürk, Mehmet; Kim, Yohan; Topkara, Umut; Subramaniam, Shankar; Szpankowski, Wojciech; Grama, Ananth

    2006-03-01

    With an ever-increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discovery of conserved patterns in these networks becomes an important problem. Although available data on protein-protein interactions is currently limited, recently developed algorithms have been shown to convey novel biological insights through employment of elegant mathematical models. The main challenge in aligning PPI networks is to define a graph theoretical measure of similarity between graph structures that captures underlying biological phenomena accurately. In this respect, modeling of conservation and divergence of interactions, as well as the interpretation of resulting alignments, are important design parameters. In this paper, we develop a framework for comprehensive alignment of PPI networks, which is inspired by duplication/divergence models that focus on understanding the evolution of protein interactions. We propose a mathematical model that extends the concepts of match, mismatch, and gap in sequence alignment to that of match, mismatch, and duplication in network alignment and evaluates similarity between graph structures through a scoring function that accounts for evolutionary events. By relying on evolutionary models, the proposed framework facilitates interpretation of resulting alignments in terms of not only conservation but also divergence of modularity in PPI networks. Furthermore, as in the case of sequence alignment, our model allows flexibility in adjusting parameters to quantify underlying evolutionary relationships. Based on the proposed model, we formulate PPI network alignment as an optimization problem and present fast algorithms to solve this problem. Detailed experimental results from an implementation of the proposed framework show that our algorithm is able to discover conserved interaction patterns very effectively, in terms of both accuracies and computational

  9. Dynamic alignment and selective decay in MHD

    NASA Technical Reports Server (NTRS)

    Matthaeus, W. H.; Montgomery, D.

    1983-01-01

    Under some circumstances, incompressible magnetohydrodynamic turbulence will evolve toward a state in which the velocity fields and magnetic fields are aligned or anti-aligned. We propose a mechanism for this effect and illustrate with numerical computations. Under some other circumstances, the energy appears to decay selectively toward a minimum energy state in which the kinetic energy has disappeared. It has not been possible so far to identify a boundary in the phase space which divides the two regimes.

  10. CARNA—alignment of RNA structure ensembles

    PubMed Central

    Sorescu, Dragoş Alexandru; Möhl, Mathias; Mann, Martin; Backofen, Rolf; Will, Sebastian

    2012-01-01

    Due to recent algorithmic progress, tools for the gold standard of comparative RNA analysis, namely Sankoff-style simultaneous alignment and folding, are now readily applicable. Such approaches, however, compare RNAs with respect to a simultaneously predicted, single, nested consensus structure. To make multiple alignment of RNAs available in cases, where this limitation of the standard approach is critical, we introduce a web server that provides a complete and convenient interface to the RNA structure alignment tool ‘CARNA’. This tool uniquely supports RNAs with multiple conserved structures per RNA and aligns pseudoknots intrinsically; these features are highly desirable for aligning riboswitches, RNAs with conserved folding pathways, or pseudoknots. We represent structural input and output information as base pair probability dot plots; this provides large flexibility in the input, ranging from fixed structures to structure ensembles, and enables immediate visual analysis of the results. In contrast to conventional Sankoff-style approaches, ‘CARNA’ optimizes all structural similarities in the input simultaneously, for example across an entire RNA structure ensemble. Even compared with already costly Sankoff-style alignment, ‘CARNA’ solves an intrinsically much harder problem by applying advanced, constraint-based, algorithmic techniques. Although ‘CARNA’ is specialized to the alignment of RNAs with several conserved structures, its performance on RNAs in general is on par with state-of-the-art general-purpose RNA alignment tools, as we show in a Bralibase 2.1 benchmark. The web server is freely available at http://rna.informatik.uni-freiburg.de/CARNA. PMID:22689637

  11. Order in vertically aligned carbon nanotube arrays

    SciTech Connect

    Wang, Hsin; Xu, Z; Eres, Gyula

    2006-01-01

    We report the direct measurements on the bulk morphology of vertically aligned multiwalled carbon nanotube (CNT) arrays using small angle neutron scattering (SANS). SANS measurements at different heights of CNT arrays corresponding to different stages of the growth reveal increasing alignment order along the thickness and two distinctly different CNT morphologies. The observations suggest that the evolution of the macroscopic CNT morphologies be driven by competing collective growth and spatial constraints.

  12. Smart and precise alignment of optical systems

    NASA Astrophysics Data System (ADS)

    Langehanenberg, Patrik; Heinisch, Josef; Stickler, Daniel

    2013-09-01

    For the assembly of any kind of optical systems the precise centration of every single element is of particular importance. Classically the precise alignment of optical components is based on the precise centering of all components to an external axis (usually a high-precision rotary spindle axis). Main drawback of this timeconsuming process is that it is significantly sensitive to misalignments of the reference (e.g. the housing) axis. In order to facilitate process in this contribution we present a novel alignment strategy for the TRIOPTICS OptiCentric® instrument family that directly aligns two elements with respect to each other by measuring the first element's axis and using this axis as alignment reference without the detour of considering an external reference. According to the optical design any axis in the system can be chosen as target axis. In case of the alignment to a barrel this axis is measured by using a distance sensor (e.g., the classically used dial indicator). Instead of fine alignment the obtained data is used for the calculation of its orientation within the setup. Alternatively, the axis of an optical element (single lens or group of lenses) whose orientation is measured with the standard OptiCentric MultiLens concept can be used as a reference. In the instrument's software the decentering of the adjusting element to the calculated axis is displayed in realtime and indicated by a target mark that can be used for the manual alignment. In addition, the obtained information can also be applied for active and fully automated alignment of lens assemblies with the help of motorized actuators.

  13. Molecular focusing and alignment with plasmon fields.

    PubMed

    Artamonov, Maxim; Seideman, Tamar

    2010-12-01

    We show the possibility of simultaneously aligning molecules and focusing their center-of-mass motion near a metal nanoparticle in the field intensity gradient created by the surface plasmon enhancement of incident light. The rotational motion is described quantum mechanically while the translation is treated classically. The effects of the nanoparticle shape on the alignment and focusing are explored. Our results carry interesting implications to the field of molecular nanoplasmonics and suggest several potential applications in nanochemistry.

  14. Technology Alignment and Portfolio Prioritization (TAPP)

    NASA Technical Reports Server (NTRS)

    Funaro, Gregory V.; Alexander, Reginald A.

    2015-01-01

    Technology Alignment and Portfolio Prioritization (TAPP) is a method being developed by the Advanced Concepts Office, at NASA Marshall Space Flight Center. The TAPP method expands on current technology assessment methods by incorporating the technological structure underlying technology development, e.g., organizational structures and resources, institutional policy and strategy, and the factors that motivate technological change. This paper discusses the methods ACO is currently developing to better perform technology assessments while taking into consideration Strategic Alignment, Technology Forecasting, and Long Term Planning.

  15. Silicon oxides as alignment surfaces for vertically-aligned nematics in photonic devices

    NASA Astrophysics Data System (ADS)

    Oton, E.; López-Andrés, S.; Bennis, N.; Otón, J. M.; Geday, M. A.

    2014-06-01

    A comparative study on alignment performance and microstructure of inorganic layers used for liquid crystal cell conditioning has been carried out. The study has focused on two specific materials, SiOx and SiO2, deposited under different conditions. The purpose was to establish a relationship between layer microstructure and liquid crystal alignment. The surface morphology has been studied by FESEM and AFM. An analysis on liquid crystal alignment, pretilt angle, response time, contrast ratio and the conditions to develop backflow effect (significant rise time increase due to pure homeotropic alignment) on vertically-aligned nematic cells has been carried out. A technique to overcome the presence of backflow has been identified. The full comparative study of SiOx and SiO2 layer properties and their influence over liquid crystal alignment and electrooptic response is presented.

  16. Aligning Biomolecular Networks Using Modular Graph Kernels

    NASA Astrophysics Data System (ADS)

    Towfic, Fadi; Greenlee, M. Heather West; Honavar, Vasant

    Comparative analysis of biomolecular networks constructed using measurements from different conditions, tissues, and organisms offer a powerful approach to understanding the structure, function, dynamics, and evolution of complex biological systems. We explore a class of algorithms for aligning large biomolecular networks by breaking down such networks into subgraphs and computing the alignment of the networks based on the alignment of their subgraphs. The resulting subnetworks are compared using graph kernels as scoring functions. We provide implementations of the resulting algorithms as part of BiNA, an open source biomolecular network alignment toolkit. Our experiments using Drosophila melanogaster, Saccharomyces cerevisiae, Mus musculus and Homo sapiens protein-protein interaction networks extracted from the DIP repository of protein-protein interaction data demonstrate that the performance of the proposed algorithms (as measured by % GO term enrichment of subnetworks identified by the alignment) is competitive with some of the state-of-the-art algorithms for pair-wise alignment of large protein-protein interaction networks. Our results also show that the inter-species similarity scores computed based on graph kernels can be used to cluster the species into a species tree that is consistent with the known phylogenetic relationships among the species.

  17. An implicit spatial memory alignment effect.

    PubMed

    Cerles, Mélanie; Gomez, Alice; Rousset, Stéphane

    2015-09-01

    The memory alignment effect is the advantage of reasoning from a perspective which is aligned with the frame of reference used to encode an environment in memory. It usually occurs when participants have to consciously take a perspective to perform a spatial memory task. The present experiment assesses whether the memory alignment effect can occur without requiring to consciously take a given perspective, when the misaligned perspective is only perceptively provided. In others words, does the memory alignment effect still arise when it is only implicitly prompted? Thirty participants learned a sequence of four objects' positions in a room from a north-as-up survey perspective. During the testing phase, they had to point to the direction of a target object from another object ('the reference') with a fixed north-up orientation. The background behind the reference object displayed either a uniform color (control condition) or a misaligned ground-level perspective. The latter displayed a reference object's position information which was either congruent with the studied environment (congruent misaligned condition) or incongruent (incongruent misaligned condition). Mean pointing errors were higher in the congruent misaligned condition than in the control condition, whereas the incongruent misaligned condition did not differ from the control one. The present study shows that the memory alignment effect can arise without requiring a conscious misaligned perspective taking. Moreover, the perceived misaligned perspective must share the same spatial content as the memorized spatial representation in order to induce an alignment effect. PMID:26233526

  18. Radiative Torque Alignment: Essential Physical Processes

    NASA Astrophysics Data System (ADS)

    Hoang, Thiem; Lazarian, A.

    2007-05-01

    Aligned grains provide a unique way to trace magnetic field topology in many astrophysical environments. In Lazarian & Hoang (2006), we derived analytical expressions for radiative torque (RAT) components, and studied the dynamics of grains assuming that the maximal inertia axis is always parallel to angular momentum. In this paper, to get insight into the dynamics of grains when thermal fluctuations are accounted for, we use AMO, and perform analytically averaging for RAT components. In addition, we study the RAT alignment for irregular grains (shape 1 and 3). We also evaluate the influence of suprathermal torques arising from H2 formation, as well as randomizing collisions with atomic gas on the alignment of grains driven by radiative torques (RATs). Our study is both based on the analytical model (AMO) and numerical calculations of RATs for irregular grains. To describe the H2 formation torques and random collisions we use the Langevin equation approach. We show that when thermal fluctuations are included, for both AMO and irregular grains, RATs tend to align grains at attractor points with low angular momentum (low-J attractor point). We found that random collisions by atomic gas act to substantially disalign the grain alignment in the case the phase trajectory map has only the low-J attractor point. In particular, if there exist attractor points at high angular momentum in the phase trajectory map, gas bombardment can move grains from the low- J attractor point to the high-J attractor point. Thus the degree of alignment increases.

  19. Observational Evidence for Radiative Interstellar Grain Alignment

    NASA Astrophysics Data System (ADS)

    Andersson, B.; Potter, S. B.; Andersson, B.; Potter, S.

    2011-11-01

    The alignment mechanisms of interstellar dust grains is a long standing astrophysical problem. Interstellar polarization was first discovered in 1949 and soon thereafter attributed to dichroic extinction caused by asymmetric dust grains aligned with the magnetic field. For a long time the alignment mechanism was thought to involve paramagnetic relaxation in rapidly spinning dust grains. Modern theory indicates that the classical alignment mechanisms are likely not efficient, but rather favor alignment through direct radiative torques. We have used multi-band polarimetry towards stars probing six nearby clouds to show that the wavelength of maximum polarization is linearly correlated with the visual extinction (Andersson & Potter 2007; AP07; where further details can be found). We find a universal relation with a common positive slope between the clouds and a DC offset correlated with the average of the total-to-selective extinction < RV > . These results provide strong observational support for radiatively driven grain alignment. Recent observations of an additional set of ≍60 sightlines in the Taurus cloud confirm and strengthen these results.

  20. New Attitude Sensor Alignment Calibration Algorithms

    NASA Technical Reports Server (NTRS)

    Hashmall, Joseph A.; Sedlak, Joseph E.; Harman, Richard (Technical Monitor)

    2002-01-01

    Accurate spacecraft attitudes may only be obtained if the primary attitude sensors are well calibrated. Launch shock, relaxation of gravitational stresses and similar effects often produce large enough alignment shifts so that on-orbit alignment calibration is necessary if attitude accuracy requirements are to be met. A variety of attitude sensor alignment algorithms have been developed to meet the need for on-orbit calibration. Two new algorithms are presented here: ALICAL and ALIQUEST. Each of these has advantages in particular circumstances. ALICAL is an attitude independent algorithm that uses near simultaneous measurements from two or more sensors to produce accurate sensor alignments. For each set of simultaneous observations the attitude is overdetermined. The information content of the extra degrees of freedom can be combined over numerous sets to provide the sensor alignments. ALIQUEST is an attitude dependent algorithm that combines sensor and attitude data into a loss function that has the same mathematical form as the Wahba problem. Alignments can then be determined using any of the algorithms (such as the QUEST quaternion estimator) that have been developed to solve the Wahba problem for attitude. Results from the use of these methods on active missions are presented.

  1. Global network alignment using multiscale spectral signatures

    PubMed Central

    Patro, Rob; Kingsford, Carl

    2012-01-01

    Motivation: Protein interaction networks provide an important system-level view of biological processes. One of the fundamental problems in biological network analysis is the global alignment of a pair of networks, which puts the proteins of one network into correspondence with the proteins of another network in a manner that conserves their interactions while respecting other evidence of their homology. By providing a mapping between the networks of different species, alignments can be used to inform hypotheses about the functions of unannotated proteins, the existence of unobserved interactions, the evolutionary divergence between the two species and the evolution of complexes and pathways. Results: We introduce GHOST, a global pairwise network aligner that uses a novel spectral signature to measure topological similarity between subnetworks. It combines a seed-and-extend global alignment phase with a local search procedure and exceeds state-of-the-art performance on several network alignment tasks. We show that the spectral signature used by GHOST is highly discriminative, whereas the alignments it produces are also robust to experimental noise. When compared with other recent approaches, we find that GHOST is able to recover larger and more biologically significant, shared subnetworks between species. Availability: An efficient and parallelized implementation of GHOST, released under the Apache 2.0 license, is available at http://cbcb.umd.edu/kingsford_group/ghost Contact: rob@cs.umd.edu PMID:23047556

  2. Can technology improve alignment during knee arthroplasty.

    PubMed

    Thienpont, Emmanuel; Fennema, Peter; Price, Andrew

    2013-09-01

    Component malalignment remains a concern in total knee arthroplasty (TKA); therefore, a series of technologies have been developed to improve alignment. The authors conducted a systematic review to compare computer-assisted navigation with conventional instrumentation, and assess the current evidence for patient-matched instrumentation and robot-assisted implantation. An extensive search of the PubMed database for relevant meta-analyses, systematic reviews and original articles was performed, with each study scrutinised by two reviewers. Data on study characteristics and outcomes were extracted from each study and compared. In total 30 studies were included: 10 meta-analyses comparing computer-assisted navigation and conventional instrumentation, 13 studies examining patient-matched instrumentation, and seven investigating robot-assisted implantation. Computer-assisted navigation showed significant and reproducible improvements in mechanical alignment over conventional instrumentation. Patient-matched instrumentation appeared to achieve a high degree of mechanical alignment, although the majority of studies were of poor quality. The data for robot-assisted surgery was less indicative. Computer-assisted navigation improves alignment during TKA over conventional instrumentation. For patient-matched instrumentation and robot-assisted implantation, alignment benefits have not been reliably demonstrated. For all three technologies, clinical benefits cannot currently be assumed, and further studies are required. Although current technologies to improve alignment during TKA appear to result in intra-operative benefits, their clinical impact remains unclear, and surgeons should take this into account when considering their adoption.

  3. Orthodontic Tooth Movement with Clear Aligners

    PubMed Central

    Drake, Carl T.; McGorray, Susan P.; Dolce, Calogero; Nair, Madhu; Wheeler, Timothy T.

    2012-01-01

    Clear aligners provide a convenient model to measure orthodontic tooth movement (OTM). We examined the role of in vivo aligner material fatigue and subject-specific factors in tooth movement. Fifteen subjects seeking orthodontic treatment at the University of Florida were enrolled. Results were compared with data previously collected from 37 subjects enrolled in a similar protocol. Subjects were followed prospectively for eight weeks. An upper central incisor was programmed to move 0.5 mm. every two weeks using clear aligners. A duplicate aligner was provided for the second week of each cycle. Weekly polyvinyl siloxane (PVS) impressions were taken, and digital models were fabricated to measure OTM. Initial and final cone beam computed tomography (CBCT) images were obtained to characterize OTM. Results were compared to data from a similar protocol, where subjects received a new aligner biweekly. No significant difference was found in the amount of OTM between the two groups, with mean total OTM of 1.11 mm. (standard deviation (SD) 0.30) and 1.07 mm. (SD 0.33) for the weekly aligner and biweekly control groups, respectively (P = 0.72). Over eight weeks, in two-week intervals, material fatigue does not play a significant role in the rate or amount of tooth movement. PMID:22928114

  4. Radiative torque alignment: essential physical processes

    NASA Astrophysics Data System (ADS)

    Hoang, Thiem; Lazarian, A.

    2008-07-01

    We study the physical processes that affect the alignment of grains subject to radiative torques (RATs). To describe the action of RATs, we use the analytical model (AMO) of RATs introduced in our previous paper. We focus our discussion on the alignment by anisotropic radiation flux with respect to the magnetic field, which defines the axis of grain Larmor precession. Such an alignment does not invoke paramagnetic dissipation (i.e. the Davis-Greenstein mechanism), but, nevertheless, grains tend to be aligned with long axes perpendicular to the magnetic field. When we account for thermal fluctuations within grains, we show that for grains that are characterized by a triaxial ellipsoid of inertia, the zero-J attractor point obtained in our earlier study develops into a low-J attractor point. The value of angular momentum at the low-J attractor point is of the order of the thermal angular momentum corresponding to the grain temperature. We show that, for situations when the direction of radiative flux is nearly perpendicular to a magnetic field, the alignment of grains with long axes parallel to the magnetic field (i.e. `wrong alignment') reported in our previous paper, disappears in the presence of thermal fluctuations. Thus, all grains are aligned with their long axes perpendicular to the magnetic field. We study the effects of stochastic gaseous bombardment and show that gaseous bombardment can drive grains from low-J to high-J attractor points in cases when high-J attractor points are present. As the alignment of grain axes with respect to angular momentum is higher for higher values of J, counter-intuitively, gaseous bombardment can increase the degree of grain alignment with respect to the magnetic field. We also study the effects of torques induced by H2 formation and show that they can change the value of angular momentum at high-J attractor points, but marginally affect the value of angular momentum at low-J attractor points. We compare the AMO results with

  5. Advances in process overlay: alignment solutions for future technology nodes

    NASA Astrophysics Data System (ADS)

    Megens, Henry; van Haren, Richard; Musa, Sami; Doytcheva, Maya; Lalbahadoersing, Sanjay; van Kemenade, Marc; Lee, Hyun-Woo; Hinnen, Paul; van Bilsen, Frank

    2007-03-01

    Semiconductor industry has an increasing demand for improvement of the total lithographic overlay performance. To improve the level of on-product overlay control the number of alignment measurements increases. Since more mask levels will be integrated, more alignment marks need to be printed when using direct-alignment (also called layer-to-layer alignment). Accordingly, the alignment mark size needs to become smaller, to fit all marks into the scribelane. For an in-direct alignment scheme, e.g. a scheme that aligns to another layer than the layer to which overlay is being measured, the number of needed alignment marks can be reduced. Simultaneously there is a requirement to reduce the size of alignment mark sub-segmentations without compromising the alignment and overlay performance. Smaller features within alignment marks can prevent processing issues like erosion, dishing and contamination. However, when the sub-segmentation size within an alignment mark becomes comparable to the critical dimension, and thus smaller than the alignment-illuminating wavelength, polarization effects might start to occur. Polarization effects are a challenge for optical alignment systems to maintain mark detectability. Nevertheless, this paper shows how to actually utilize those effects in order to obtain enhanced alignment and overlay performance to support future technology nodes. Finally, another challenge to be met for new semiconductor product technologies is the ability to align through semi-opaque materials, like for instance new hard-mask materials. Enhancement of alignment signal strength can be reached by adapting to new alignment marks that generate a higher alignment signal. This paper provides a description of an integral alignment solution that meets with these emerging customer application requirements. Complying with these requirements will significantly enhance the flexibility in production strategies while maintaining or improving the alignment and overlay

  6. Multiple structure alignment with msTALI

    PubMed Central

    2012-01-01

    Background Multiple structure alignments have received increasing attention in recent years as an alternative to multiple sequence alignments. Although multiple structure alignment algorithms can potentially be applied to a number of problems, they have primarily been used for protein core identification. A method that is capable of solving a variety of problems using structure comparison is still absent. Here we introduce a program msTALI for aligning multiple protein structures. Our algorithm uses several informative features to guide its alignments: torsion angles, backbone Cα atom positions, secondary structure, residue type, surface accessibility, and properties of nearby atoms. The algorithm allows the user to weight the types of information used to generate the alignment, which expands its utility to a wide variety of problems. Results msTALI exhibits competitive results on 824 families from the Homstrad and SABmark databases when compared to Matt and Mustang. We also demonstrate success at building a database of protein cores using 341 randomly selected CATH domains and highlight the contribution of msTALI compared to the CATH classifications. Finally, we present an example applying msTALI to the problem of detecting hinges in a protein undergoing rigid-body motion. Conclusions msTALI is an effective algorithm for multiple structure alignment. In addition to its performance on standard comparison databases, it utilizes clear, informative features, allowing further customization for domain-specific applications. The C++ source code for msTALI is available for Linux on the web at http://ifestos.cse.sc.edu/mstali. PMID:22607234

  7. Using Quasi-Horizontal Alignment in the absence of the actual alignment.

    PubMed

    Banihashemi, Mohamadreza

    2016-10-01

    Horizontal alignment is a major roadway characteristic used in safety and operational evaluations of many facility types. The Highway Safety Manual (HSM) uses this characteristic in crash prediction models for rural two-lane highways, freeway segments, and freeway ramps/C-D roads. Traffic simulation models use this characteristic in their processes on almost all types of facilities. However, a good portion of roadway databases do not include horizontal alignment data; instead, many contain point coordinate data along the roadways. SHRP 2 Roadway Information Database (RID) is a good example of this type of data. Only about 5% of this geodatabase contains alignment information and for the rest, point data can easily be produced. Even though the point data can be used to extract actual horizontal alignment data but, extracting horizontal alignment is a cumbersome and costly process, especially for a database of miles and miles of highways. This research introduces a so called "Quasi-Horizontal Alignment" that can be produced easily and automatically from point coordinate data and can be used in the safety and operational evaluations of highways. SHRP 2 RID for rural two-lane highways in Washington State is used in this study. This paper presents a process through which Quasi-Horizontal Alignments are produced from point coordinates along highways by using spreadsheet software such as MS EXCEL. It is shown that the safety and operational evaluations of the highways with Quasi-Horizontal Alignments are almost identical to the ones with the actual alignments. In the absence of actual alignment the Quasi-Horizontal Alignment can easily be produced from any type of databases that contain highway coordinates such geodatabases and digital maps.

  8. Using Quasi-Horizontal Alignment in the absence of the actual alignment.

    PubMed

    Banihashemi, Mohamadreza

    2016-10-01

    Horizontal alignment is a major roadway characteristic used in safety and operational evaluations of many facility types. The Highway Safety Manual (HSM) uses this characteristic in crash prediction models for rural two-lane highways, freeway segments, and freeway ramps/C-D roads. Traffic simulation models use this characteristic in their processes on almost all types of facilities. However, a good portion of roadway databases do not include horizontal alignment data; instead, many contain point coordinate data along the roadways. SHRP 2 Roadway Information Database (RID) is a good example of this type of data. Only about 5% of this geodatabase contains alignment information and for the rest, point data can easily be produced. Even though the point data can be used to extract actual horizontal alignment data but, extracting horizontal alignment is a cumbersome and costly process, especially for a database of miles and miles of highways. This research introduces a so called "Quasi-Horizontal Alignment" that can be produced easily and automatically from point coordinate data and can be used in the safety and operational evaluations of highways. SHRP 2 RID for rural two-lane highways in Washington State is used in this study. This paper presents a process through which Quasi-Horizontal Alignments are produced from point coordinates along highways by using spreadsheet software such as MS EXCEL. It is shown that the safety and operational evaluations of the highways with Quasi-Horizontal Alignments are almost identical to the ones with the actual alignments. In the absence of actual alignment the Quasi-Horizontal Alignment can easily be produced from any type of databases that contain highway coordinates such geodatabases and digital maps. PMID:27391796

  9. FRESCO: flexible alignment with rectangle scoring schemes.

    PubMed

    Dalca, A V; Brudno, M

    2008-01-01

    While the popular DNA sequence alignment tools incorporate powerful heuristics to allow for fast and accurate alignment of DNA, most of them still optimize the classical Needleman Wunsch scoring scheme. The development of novel scoring schemes is often hampered by the difficulty of finding an optimizing algorithm for each non-trivial scheme. In this paper we define the broad class of rectangle scoring schemes, and describe an algorithm and tool that can align two sequences with an arbitrary rectangle scoring scheme in polynomial time. Rectangle scoring schemes encompass some of the popular alignment scoring metrics currently in use, as well as many other functions. We investigate a novel scoring function based on minimizing the expected number of random diagonals observed with the given scores and show that it rivals the LAGAN and Clustal-W aligners, without using any biological or evolutionary parameters. The FRESCO program, freely available at http://compbio.cs.toronto.edu/fresco, gives bioinformatics researchers the ability to quickly compare the performance of other complex scoring formulas without having to implement new algorithms to optimize them.

  10. LCLS Undulator Commissioning, Alignment, and Performance

    SciTech Connect

    Nuhn, Heinz-Dieter

    2009-10-30

    The LCLS x-ray FEL has recently achieved its 1.5-Angstrom lasing and saturation goals upon first trial. This was achieved as a result of a thorough pre-beam checkout, both traditional and beam-based component alignment techniques, and high electron beam brightness. The x-ray FEL process demands very tight tolerances on the straightness of the electron beam trajectory (<5 {micro}m) through the LCLS undulator system. Tight, but less stringent tolerances of {approx}100 {micro}m rms were met for the transverse placement of the individual undulator segments with respect to the beam axis. The tolerances for electron beam straightness can only be met through a beam-based alignment (BBA) method, which is implemented using large electron energy variations and sub-micron resolution cavity beam position monitors (BPM), with precise conventional alignment used to set the starting conditions. Precision-fiducialization of components mounted on remotely adjustable girders, and special beam-finder wires (BFW) at each girder have been used to meet these challenging alignment tolerances. Longer-term girder movement due to ground motion and temperature changes are being monitored, continuously, by a unique stretched wire and hydrostatic level Alignment Diagnostics System (ADS).

  11. Multiple network alignment on quantum computers

    NASA Astrophysics Data System (ADS)

    Daskin, Anmer; Grama, Ananth; Kais, Sabre

    2014-12-01

    Comparative analyses of graph-structured datasets underly diverse problems. Examples of these problems include identification of conserved functional components (biochemical interactions) across species, structural similarity of large biomolecules, and recurring patterns of interactions in social networks. A large class of such analyses methods quantify the topological similarity of nodes across networks. The resulting correspondence of nodes across networks, also called node alignment, can be used to identify invariant subgraphs across the input graphs. Given graphs as input, alignment algorithms use topological information to assign a similarity score to each -tuple of nodes, with elements (nodes) drawn from each of the input graphs. Nodes are considered similar if their neighbors are also similar. An alternate, equivalent view of these network alignment algorithms is to consider the Kronecker product of the input graphs and to identify high-ranked nodes in the Kronecker product graph. Conventional methods such as PageRank and HITS (Hypertext-Induced Topic Selection) can be used for this purpose. These methods typically require computation of the principal eigenvector of a suitably modified Kronecker product matrix of the input graphs. We adopt this alternate view of the problem to address the problem of multiple network alignment. Using the phase estimation algorithm, we show that the multiple network alignment problem can be efficiently solved on quantum computers. We characterize the accuracy and performance of our method and show that it can deliver exponential speedups over conventional (non-quantum) methods.

  12. Alignment and Integration of Lightweight Mirror Segments

    NASA Technical Reports Server (NTRS)

    Evans, Tyler; Biskach, Michael; Mazzarella, Jim; McClelland, Ryan; Saha, Timo; Zhang, Will; Chan, Kai-Wing

    2011-01-01

    The optics for the International X-Ray Observatory (IXO) require alignment and integration of about fourteen thousand thin mirror segments to achieve the mission goal of 3.0 square meters of effective area at 1.25 keV with an angular resolution of five arc-seconds. These mirror segments are 0.4 mm thick, and 200 to 400 mm in size, which makes it difficult not to impart distortion at the sub-arc-second level. This paper outlines the precise alignment, permanent bonding, and verification testing techniques developed at NASA's Goddard Space Flight Center (GSFC). Improvements in alignment include new hardware and automation software. Improvements in bonding include two module new simulators to bond mirrors into, a glass housing for proving single pair bonding, and a Kovar module for bonding multiple pairs of mirrors. Three separate bonding trials were x-ray tested producing results meeting the requirement of sub ten arc-second alignment. This paper will highlight these recent advances in alignment, testing, and bonding techniques and the exciting developments in thin x-ray optic technology development.

  13. Large Telescope Segmented Primary Mirror Alignment

    NASA Technical Reports Server (NTRS)

    Rud, Mayer

    2010-01-01

    A document discusses a broadband (white light) point source, located at the telescope Cassegrain focus, which generates a cone of light limited by the hole in the secondary mirror (SM). It propagates to the aspheric null-mirror, which is optimized to make all the reflected rays to be normal to the primary mirror (PM) upon reflection. PM retro-reflects the rays back through the system for wavefront analysis. The point source and the wavefront analysis subsystems are all located behind the PM. The PM phasing is absolute (white light) and does not involve the SM. A relatively small, aspheric null-mirror located near the PM center of curvature has been designed to deliver the high level of optical wavefront correction. The phasing of the segments is absolute due to the use of a broadband source. The segmented PM is optically aligned independently and separately from the SM alignment. The separation of the PM segments alignment from the PM to the SM, and other telescope optics alignments, may be a significant advantage, eliminating the errors coupling. The point source of this concept is fully cooperative, unlike a star or laser-generated guide-star, providing the necessary brightness for the optimal S/N ratio, the spectral content, and the stable on-axis position. This concept can be implemented in the lab for the PM initial alignment, or made to be a permanent feature of the space-based or groundbased telescope.

  14. A simple method to control over-alignment in the MAFFT multiple sequence alignment program

    PubMed Central

    Katoh, Kazutaka; Standley, Daron M.

    2016-01-01

    Motivation: We present a new feature of the MAFFT multiple alignment program for suppressing over-alignment (aligning unrelated segments). Conventional MAFFT is highly sensitive in aligning conserved regions in remote homologs, but the risk of over-alignment is recently becoming greater, as low-quality or noisy sequences are increasing in protein sequence databases, due, for example, to sequencing errors and difficulty in gene prediction. Results: The proposed method utilizes a variable scoring matrix for different pairs of sequences (or groups) in a single multiple sequence alignment, based on the global similarity of each pair. This method significantly increases the correctly gapped sites in real examples and in simulations under various conditions. Regarding sensitivity, the effect of the proposed method is slightly negative in real protein-based benchmarks, and mostly neutral in simulation-based benchmarks. This approach is based on natural biological reasoning and should be compatible with many methods based on dynamic programming for multiple sequence alignment. Availability and implementation: The new feature is available in MAFFT versions 7.263 and higher. http://mafft.cbrc.jp/alignment/software/ Contact: katoh@ifrec.osaka-u.ac.jp Supplementary information: Supplementary data are available at Bioinformatics online. PMID:27153688

  15. Alignment of Standards and Assessment: A Theoretical and Empirical Study of Methods for Alignment

    ERIC Educational Resources Information Center

    Nasstrom, Gunilla; Henriksson, Widar

    2008-01-01

    Introduction: In a standards-based school-system alignment of policy documents with standards and assessment is important. To be able to evaluate whether schools and students have reached the standards, the assessment should focus on the standards. Different models and methods can be used for measuring alignment, i.e. the correspondence between…

  16. An active alignment method for post launch co-alignment of laser beam combiner systems

    NASA Technical Reports Server (NTRS)

    Yu, A. W.; Green, J. W.; Maynard, W. L.; Minott, P. O.; Krainak, M. A.

    1992-01-01

    A laser transmitter for high bandwidth geosynchronous satellite communications is described. High optical power is achieved by combining semiconductor laser diodes. An active alignment scheme is proposed for achieving the +/- 20 microrad post launch multiple laser angular co-alignment requirement.

  17. What Are We Aligning Tests to When We Report Test Alignment to the CEFR?

    ERIC Educational Resources Information Center

    Harsch, Claudia; Hartig, Johannes

    2015-01-01

    The study reported here investigates the validity of judgments made when aligning tests to the "Common European Framework of Reference" (CEFR). Listening tests operationalizing pre-defined difficulty-determining characteristics were to be aligned to CEFR levels. We employed a modified version of the item-descriptor-matching-method. Ten…

  18. Business-IT Alignment: A Current-State Evaluation of Strategic Alignment within the Hospital Organization

    ERIC Educational Resources Information Center

    Evers, Kevin W.

    2010-01-01

    More than thirty years of research has shown that the practical value of business-IT alignment is significant and that its importance derives from strategic impact on business outcomes. The purpose of this exploratory study is to identify the current-state of business-IT alignment maturity within the hospital organization. Data for this study was…

  19. Alignment of Standards and Assessments as an Accountability Criterion.

    ERIC Educational Resources Information Center

    La Marca, Paul M.

    2001-01-01

    Provides an overview of the concept of alignment and the role it plays in assessment and accountability systems. Discusses some methodological issues affecting the study of alignment and explores the relationship between alignment and test score interpretation. Alignment is not only a methodological requirement but also an ethical requirement.…

  20. Comparison of Beam-Based Alignment Algorithms for the ILC

    SciTech Connect

    Smith, J.C.; Gibbons, L.; Patterson, J.R.; Rubin, D.L.; Sagan, D.; Tenenbaum, P.; /SLAC

    2006-03-15

    The main linac of the International Linear Collider (ILC) requires more sophisticated alignment techniques than those provided by survey alone. Various Beam-Based Alignment (BBA) algorithms have been proposed to achieve the desired low emittance preservation. Dispersion Free Steering, Ballistic Alignment and the Kubo method are compared. Alignment algorithms are also tested in the presence of an Earth-like stray field.

  1. The biogeochemistry and occurrence of unusual plant species inhabiting acidic, metal-rich water, Red Mountain, Bonnifield district, Alaska Range: Chapter J in Recent U.S. Geological Survey studies in the Tintina Gold Province, Alaska, United States, and Yukon, Canada--results of a 5-year project

    USGS Publications Warehouse

    Gough, Larry P.; Eppinger, Robert G.; Briggs, Paul H.

    2007-01-01

    This report presents results on the occurrence and biogeochemistry of unusual plant species, and of their supporting sediment, in an undisturbed volcanogenic massive sulfide deposit in the Tintina Gold Province (see fig. 1 of Editors’ Preface and Overview). The extraordinary plant assemblage found growing in the acidic metal-rich waters that drain the area is composed predominantly of bryophytes (liverworts and mosses). Ferricrete-cemented silty alluvial sediments within seeps and streams are covered with the liverwort Gymnocolea inflata, whereas the mosses Polytrichum commune and P. juniperinum inhabit the area adjacent to the water and within the splash zone. Both the liverwort-encrusted sediment and Polytrichum thalli have high concentrations of major- and trace-metal cations (for example, Al, As, Cu, Fe, Hg, La, Mn, Pb, and Zn). Soils in the area do not reflect the geochemical signature of the mineral deposit, and we suspect that they are most influenced by the chemistry of airborne dust (aeolian material) derived from outside the area.

  2. System and method for 2D workpiece alignment

    SciTech Connect

    Weaver, William T.; Carlson, Charles T.; Smith, Scott A.; Beck, Michael A.; Webb, Aaron P.; Strassner, James D.; Gravell, Lawrence R.; Simmons, Michael C.

    2015-07-14

    A carrier capable of holding one or more workpieces is disclosed. The carrier includes movable projections located along the sides of each cell in the carrier. This carrier, in conjunction with a separate alignment apparatus, aligns each workpiece within its respective cell against several alignment pins, using a multiple step alignment process to guarantee proper positioning of the workpiece in the cell. First, the workpieces are moved toward one side of the cell. Once the workpieces have been aligned against this side, the workpieces are then moved toward an adjacent orthogonal side such that the workpieces are aligned to two sides of the cell. Once aligned, the workpiece is held in place by the projections located along each side of each cell. In addition, the alignment pins are also used to align the associated mask, thereby guaranteeing that the mask is properly aligned to the workpiece.

  3. Development of VIRUS alignment and assembly fixtures

    NASA Astrophysics Data System (ADS)

    Collins, Amanda D.; Vattiat, Brian; Marshall, J. L.; Hill, Gary J.; DePoy, D. L.; Lee, Hanshin; Allen, Richard D.; Prochaska, Travis; Villanueva, Steven, Jr.

    2010-07-01

    The Visible Integral-Field Replicable Unit Spectrograph (VIRUS) Instrument is a set of 150+ optical spectrographs to support observations for the Hobby-Eberly Telescope Dark Energy Experiment (HETDEX). We plan to use a production line assembly process to construct the large number of VIRUS units. This allows each sub-assembly of a VIRUS unit to be interchangeable amongst all other VIRUS units. A production line manufacturing procedure will enable various sub-assemblies to be built and tested in parallel. Examples of alignment and assembly fixtures required for the VIRUS manufacturing process include a camera mirror alignment system, a collimator structure assembly device, a collimator mirror mounting tool, and a grating alignment system. In this paper we describe the design of these fixtures and their importance in the VIRUS assembly process.

  4. Prosody and alignment: a sequential perspective

    NASA Astrophysics Data System (ADS)

    Szczepek Reed, Beatrice

    2010-12-01

    In their analysis of a corpus of classroom interactions in an inner city high school, Roth and Tobin describe how teachers and students accomplish interactional alignment by prosodically matching each other's turns. Prosodic matching, and specific prosodic patterns are interpreted as signs of, and contributions to successful interactional outcomes and positive emotions. Lack of prosodic matching, and other specific prosodic patterns are interpreted as features of unsuccessful interactions, and negative emotions. This forum focuses on the article's analysis of the relation between interpersonal alignment, emotion and prosody. It argues that prosodic matching, and other prosodic linking practices, play a primarily sequential role, i.e. one that displays the way in which participants place and design their turns in relation to other participants' turns. Prosodic matching, rather than being a conversational action in itself, is argued to be an interactional practice (Schegloff 1997), which is not always employed for the accomplishment of `positive', or aligning actions.

  5. Spent fuel container alignment device and method

    DOEpatents

    Jones, Stewart D.; Chapek, George V.

    1996-01-01

    An alignment device is used with a spent fuel shipping container including a plurality of fuel pockets for spent fuel arranged in an annular array and having a rotatable cover including an access opening therein. The alignment device includes a lightweight plate which is installed over the access opening of the cover. A laser device is mounted on the plate so as to emit a laser beam through a laser admittance window in the cover into the container in the direction of a pre-established target associated with a particular fuel pocket. An indexing arrangement on the container provides an indication of the angular position of the rotatable cover when the laser beam produced by the laser is brought into alignment with the target of the associated fuel pocket.

  6. Making Macroscopic Assemblies of Aligned Carbon Nanotubes

    NASA Technical Reports Server (NTRS)

    Smalley, Richard E.; Colbert, Daniel T.; Smith, Ken A.; Walters, Deron A.; Casavant, Michael J.; Qin, Xiaochuan; Yakobson, Boris; Hauge, Robert H.; Saini, Rajesh Kumar; Chiung, Wan-Ting; Huffman, Charles B.

    2005-01-01

    A method of aligning and assembling single-wall carbon nanotubes (SWNTs) to fabricate macroscopic structures has been invented. The method entails suspending SWNTs in a fluid, orienting the SWNTs by use of a magnetic and/or electric field, and then removing the aligned SWNTs from suspension in such a way as to assemble them while maintaining the alignment. SWNTs are essentially tubular extensions of fullerene molecules. It is desirable to assemble aligned SWNTs into macroscopic structures because the common alignment of the SWNTs in such a structure makes it possible to exploit, on a macroscopic scale, the unique mechanical, chemical, and electrical properties that individual oriented SWNTs exhibit at the molecular level. Because of their small size and high electrical conductivity, carbon nanotubes, and especially SWNTs, are useful for making electrical connectors in integrated circuits. Carbon nanotubes can be used as antennas at optical frequencies, and as probes in scanning tunneling microscopes, atomic-force microscopes, and the like. Carbon nanotubes can be used with or instead of carbon black in tires. Carbon nanotubes are useful as supports for catalysts. Ropes of SWNTs are metallic and, as such, are potentially useful in some applications in which electrical conductors are needed - for example, they could be used as additives in formulating electrically conductive paints. Finally, macroscopic assemblies of aligned SWNTs can serve as templates for the growth of more and larger structures of the same type. The great variety of tubular fullerene molecules and of the structures that could be formed by assembling them in various ways precludes a complete description of the present method within the limits of this article. It must suffice to present a typical example of the use of one of many possible variants of the method to form a membrane comprising SWNTs aligned substantially parallel to each other in the membrane plane. The apparatus used in this variant

  7. The relationship between pelvic alignment and dysmenorrhea

    PubMed Central

    Kim, Moon-jeong; Baek, Il-hun; Goo, Bong-oh

    2016-01-01

    [Purpose] The purpose of this study was to investigate the relationship between pelvic alignment and dysmenorrhea in general women. [Subjects and Methods] One hundred two females participated in this study. They were divided into a dysmenorrhea group and a normal group based on the results of a Visual Analogue Scale (VAS) assessment of pain and the Menstrual Distress Questionnaire (MDQ). The survey data was collecting from 5th July to 20th September, 2014. Formetric 4D was used to measure the pelvic alignment, including the values of Trunk Imbalance, Pelvic Tilt, Surface Rotation, Lateral Deviation, Kyphosis Angle, Lordosis Angle. [Results] There was a difference in the spine alignments of each group. The value of pelvic torsion was 2.4 ± 1.8 degree in those with dysmenorrhea, while it was 1.7 ± 1.1 degree in those without. [Conclusion] In conclusion, the results suggest that there is a relationship between menstrual pain and pelvic torsion. PMID:27134354

  8. Active alignment/contact verification system

    DOEpatents

    Greenbaum, William M.

    2000-01-01

    A system involving an active (i.e. electrical) technique for the verification of: 1) close tolerance mechanical alignment between two component, and 2) electrical contact between mating through an elastomeric interface. For example, the two components may be an alumina carrier and a printed circuit board, two mating parts that are extremely small, high density parts and require alignment within a fraction of a mil, as well as a specified interface point of engagement between the parts. The system comprises pairs of conductive structures defined in the surfaces layers of the alumina carrier and the printed circuit board, for example. The first pair of conductive structures relate to item (1) above and permit alignment verification between mating parts. The second pair of conductive structures relate to item (2) above and permit verification of electrical contact between mating parts.

  9. Delayed neutron alignment in sup 117 I

    SciTech Connect

    Paul, E.S.; Waring, M.P.; Clark, R.M.; Forbes, S.A.; Fossan, D.B.; Hughes, J.R.; LaFosse, D.R.; Liang, Y.; Ma, R.; Vaska, P.; Wadsworth, R. Department of Physics, State University of New York at Stony Brook, Stony Brook, New York 11794 Department of Physics, University of York, Heslington, York YO1 5DD Medical Department, Brookhaven National Laboratory, Upton, New York 11973 )

    1992-06-01

    The rotational alignment of {ital h}{sub 11/2} neutrons is considerably delayed ({Delta}{h bar}{omega}{similar to}0.11 MeV) in the {pi}{ital h}{sub 11/2}(550)1/2{sup {minus}} intruder band in {sup 117}I when compared to bands built on normal-parity states. Comparison with cranked shell-model calculations suggests that this effect may indicate a larger quadrupole deformation for the intruder orbital. A strong neutron-proton interaction between the aligning {ital h}{sub 11/2} neutrons and the {ital h}{sub 11/2} proton intruder may also play a role. In addition, noncollective oblate states at {ital I}{sup {pi}}=39/2{sup {minus}},43/2{sup {minus}}, and 45/2{sup {minus}} compete energetically with rotational states of the intruder band which may also perturb the neutron alignment.

  10. Purification process for vertically aligned carbon nanofibers

    NASA Technical Reports Server (NTRS)

    Nguyen, Cattien V.; Delziet, Lance; Matthews, Kristopher; Chen, Bin; Meyyappan, M.

    2003-01-01

    Individual, free-standing, vertically aligned multiwall carbon nanotubes or nanofibers are ideal for sensor and electrode applications. Our plasma-enhanced chemical vapor deposition techniques for producing free-standing and vertically aligned carbon nanofibers use catalyst particles at the tip of the fiber. Here we present a simple purification process for the removal of iron catalyst particles at the tip of vertically aligned carbon nanofibers derived by plasma-enhanced chemical vapor deposition. The first step involves thermal oxidation in air, at temperatures of 200-400 degrees C, resulting in the physical swelling of the iron particles from the formation of iron oxide. Subsequently, the complete removal of the iron oxide particles is achieved with diluted acid (12% HCl). The purification process appears to be very efficient at removing all of the iron catalyst particles. Electron microscopy images and Raman spectroscopy data indicate that the purification process does not damage the graphitic structure of the nanotubes.

  11. Backup Alignment Devices on Shuttle: Heads-Up Display or Crew Optical Alignment Sight

    NASA Technical Reports Server (NTRS)

    Chavez, Melissa A.

    2011-01-01

    NASA s Space Shuttle was built to withstand multiple failures while still keeping the crew and vehicle safe. Although the design of the Space Shuttle had a great deal of redundancy built into each system, there were often additional ways to keep systems in the best configuration if a failure were to occur. One such method was to use select pieces of hardware in a way for which they were not primarily intended. The primary function of the Heads-Up Display (HUD) was to provide the crew with a display of flight critical information during the entry phase. The primary function of the Crew Optical Alignment Sight (COAS) was to provide the crew an optical alignment capability for rendezvous and docking phases. An alignment device was required to keep the Inertial Measurement Units (IMUs) well aligned for a safe Entry; nominally this alignment device would be the two on-board Star Trackers. However, in the event of a Star Tracker failure, the HUD or COAS could also be used as a backup alignment device, but only if the device had been calibrated beforehand. Once the HUD or COAS was calibrated and verified then it was considered an adequate backup to the Star Trackers for entry IMU alignment. There were procedures in place and the astronauts were trained on how to accurately calibrate the HUD or COAS and how to use them as an alignment device. The calibration procedure for the HUD and COAS had been performed on many Shuttle missions. Many of the first calibrations performed were for data gathering purposes to determine which device was more accurate as a backup alignment device, HUD or COAS. Once this was determined, the following missions would frequently calibrate the HUD in order to be one step closer to having the device ready in case it was needed as a backup alignment device.

  12. Approximate protein structural alignment in polynomial time.

    PubMed

    Kolodny, Rachel; Linial, Nathan

    2004-08-17

    Alignment of protein structures is a fundamental task in computational molecular biology. Good structural alignments can help detect distant evolutionary relationships that are hard or impossible to discern from protein sequences alone. Here, we study the structural alignment problem as a family of optimization problems and develop an approximate polynomial-time algorithm to solve them. For a commonly used scoring function, the algorithm runs in O(n(10)/epsilon(6)) time, for globular protein of length n, and it detects alignments that score within an additive error of epsilon from all optima. Thus, we prove that this task is computationally feasible, although the method that we introduce is too slow to be a useful everyday tool. We argue that such approximate solutions are, in fact, of greater interest than exact ones because of the noisy nature of experimentally determined protein coordinates. The measurement of similarity between a pair of protein structures used by our algorithm involves the Euclidean distance between the structures (appropriately rigidly transformed). We show that an alternative approach, which relies on internal distance matrices, must incorporate sophisticated geometric ingredients if it is to guarantee optimality and run in polynomial time. We use these observations to visualize the scoring function for several real instances of the problem. Our investigations yield insights on the computational complexity of protein alignment under various scoring functions. These insights can be used in the design of scoring functions for which the optimum can be approximated efficiently and perhaps in the development of efficient algorithms for the multiple structural alignment problem. PMID:15304646

  13. Two Hybrid Algorithms for Multiple Sequence Alignment

    NASA Astrophysics Data System (ADS)

    Naznin, Farhana; Sarker, Ruhul; Essam, Daryl

    2010-01-01

    In order to design life saving drugs, such as cancer drugs, the design of Protein or DNA structures has to be accurate. These structures depend on Multiple Sequence Alignment (MSA). MSA is used to find the accurate structure of Protein and DNA sequences from existing approximately correct sequences. To overcome the overly greedy nature of the well known global progressive alignment method for multiple sequence alignment, we have proposed two different algorithms in this paper; one is using an iterative approach with a progressive alignment method (PAMIM) and the second one is using a genetic algorithm with a progressive alignment method (PAMGA). Both of our methods started with a "kmer" distance table to generate single guide-tree. In the iterative approach, we have introduced two new techniques: the first technique is to generate Guide-trees with randomly selected sequences and the second is of shuffling the sequences inside that tree. The output of the tree is a multiple sequence alignment which has been evaluated by the Sum of Pairs Method (SPM) considering the real value data from PAM250. In our second GA approach, these two techniques are used to generate an initial population and also two different approaches of genetic operators are implemented in crossovers and mutation. To test the performance of our two algorithms, we have compared these with the existing well known methods: T-Coffee, MUSCEL, MAFFT and Probcon, using BAliBase benchmarks. The experimental results show that the first algorithm works well for some situations, where other existing methods face difficulties in obtaining better solutions. The proposed second method works well compared to the existing methods for all situations and it shows better performance over the first one.

  14. Magnetic Field Measurement with Ground State Alignment

    NASA Astrophysics Data System (ADS)

    Yan, Huirong; Lazarian, A.

    Observational studies of magnetic fields are crucial. We introduce a process "ground state alignment" as a new way to determine the magnetic field direction in diffuse medium. The alignment is due to anisotropic radiation impinging on the atom/ion. The consequence of the process is the polarization of spectral lines resulting from scattering and absorption from aligned atomic/ionic species with fine or hyperfine structure. The magnetic field induces precession and realign the atom/ion and therefore the polarization of the emitted or absorbed radiation reflects the direction of the magnetic field. The atoms get aligned at their low levels and, as the life-time of the atoms/ions we deal with is long, the alignment induced by anisotropic radiation is susceptible to extremely weak magnetic fields (1 G ≳ B ≳ 10^{-15} G). In fact, the effects of atomic/ionic alignment were studied in the laboratory decades ago, mostly in relation to the maser research. Recently, the atomic effect has been already detected in observations from circumstellar medium and this is a harbinger of future extensive magnetic field studies. A unique feature of the atomic realignment is that they can reveal the 3D orientation of magnetic field. In this chapter, we shall review the basic physical processes involved in atomic realignment. We shall also discuss its applications to interplanetary, circumstellar and interstellar magnetic fields. In addition, our research reveals that the polarization of the radiation arising from the transitions between fine and hyperfine states of the ground level can provide a unique diagnostics of magnetic fields in the Epoch of Reionization.

  15. Alignment of a two-beam interferometer

    NASA Technical Reports Server (NTRS)

    Tubbs, E. F.

    1980-01-01

    Two beam interferometers have been proposed for space applications such as sensing the shape of a large antenna. Since alignment and adjustment of interferometers have long been considered difficult laboratory tasks, the question of making their operation sufficiently automatic for space applications is a serious one. As a first step in addressing this question certain manual procedures, which may not be well known, have been collected from widely scattered sources. These techniques are illustrated by two examples: (1) the alignment of a Mach-Zehnder interferometer and the adjustment of fringe location. (2) The adjustment of a Michelson interferometer for zero path difference (white light fringes).

  16. Alignment Pins for Assembling and Disassembling Structures

    NASA Technical Reports Server (NTRS)

    Campbell, Oliver C.

    2008-01-01

    Simple, easy-to-use, highly effective tooling has been devised for maintaining alignment of bolt holes in mating structures during assembly and disassembly of the structures. The tooling was originally used during removal of a body flap from the space shuttle Atlantis, in which misalignments during removal of the last few bolts could cause the bolts to bind in their holes. By suitably modifying the dimensions of the tooling components, the basic design of the tooling can readily be adapted to other structures that must be maintained in alignment. The tooling includes tapered, internally threaded alignment pins designed to fit in the bolt holes in one of the mating structures, plus a draw bolt and a cup that are used to install or remove each alignment pin. In preparation for disassembly of two mating structures, external supports are provided to prevent unintended movement of the structures. During disassembly of the structures, as each bolt that joins the structures is removed, an alignment pin is installed in its place. Once all the bolts have been removed and replaced with pins, the pins maintain alignment as the structures are gently pushed or pulled apart on the supports. In assembling the two structures, one reverses the procedure described above: pins are installed in the bolt holes, the structures are pulled or pushed together on the supports, then the pins are removed and replaced with bolts. The figure depicts the tooling and its use. To install an alignment pin in a bolt hole in a structural panel, the tapered end of the pin is inserted from one side of the panel, the cup is placed over the pin on the opposite side of the panel, the draw bolt is inserted through the cup and threaded into the pin, the draw bolt is tightened to pull the pin until the pin is seated firmly in the hole, then the draw bolt and cup are removed, leaving the pin in place. To remove an alignment pin, the cup is placed over the pin on the first-mentioned side of the panel, the draw

  17. Drift Chamber Alignment using Cosmic Rays

    SciTech Connect

    Kotwal, Ashutosh V.; Hays, Christopher P.

    2014-05-07

    The Collider Detector at Fermilab (CDF) is a general-purpose experimental apparatus with an inner tracking detector for measuring charged particles, surrounded by a calorimeter for measurements of electromagnetic and hadronic showers, and a muon detector system. We present a technique for, and results of, a precise relative alignment of the drift chamber wires of the CDF tracker. This alignment has been an important component of the track momentum calibration, which is the basis for the charged-lepton calibration for the measurement of the W boson mass at CDF.

  18. Fine alignment of a large segmented mirror

    NASA Technical Reports Server (NTRS)

    Dey, Thomas William (Inventor)

    2010-01-01

    A system for aligning a segmented mirror includes a source of radiation directed along a first axis to the segmented mirror and a beamsplitter removably inserted along the first axis for redirecting radiation from the first axis to a second axis, substantially perpendicular to the first axis. An imaging array is positioned along the second axis for imaging the redirected radiation, and a knife-edge configured for cutting the redirected radiation is serially positioned to occlude and not occlude the redirected radiation, effectively providing a variable radiation pattern detected by the imaging array for aligning the segmented mirror.

  19. Survey and Alignment of SLAC's B Factory

    SciTech Connect

    Pietryka, Matthew J.; Gaydosh, Michael L.; /SLAC

    2011-09-08

    The survey and alignment of SLAC's B-factory injector and high energy ring will be complete in March 1997. Modern digital electronic surveying tools are contributing to new, efficient alignment procedures. A laser tracker was used to fiducialize almost 300 quadrupole magnets. Digital levels were used to pre-set base plate elevations. Theodolites with very accurate co-axial distance meters were used for everything from layout to 3D magnet positioning to network surveys, all in free stationing mode. A number of procedures and measurement results are outlined.

  20. Instability of Ocular Alignment in Childhood Esotropia

    PubMed Central

    2008-01-01

    Objective Instability of ocular alignment may cause surgeons to delay surgical correction of childhood esotropia. We investigated the stability of ocular alignment over 18 weeks in children with infantile esotropia (IET), acquired non-accommodative esotropia (ANAET), or acquired partially-accommodative esotropia (APAET). Design Prospective observational study Participants Two hundred thirty-three children aged 2 months to <5 years with IET, ANAET, or APAET of less than 6 months duration Methods Ocular alignment was measured at baseline and at six-week intervals for 18 weeks. Main Outcome Measure Using definitions derived from a nested test-retest study and computer simulation modeling, ocular alignment was classified as ‘unstable’ if there was a change of ≥ 15 prism diopters (PD) between any two of the four measurements, as ‘stable’ if all four measurements were within ≤ 5 PD of one another, or as ‘uncertain’ if neither criteria was met. Results Of those who completed all three follow-up visits within time windows for analysis, 27 (46%) of 59 subjects with IET had ocular alignment classified as unstable (95% confidence interval (CI) = 33 to 59%), 20% as stable (95% CI = 11 to 33%), and 34% as uncertain (95% CI = 22 to 47%). Thirteen (22%) of 60 subjects with ANAET had ocular alignment classified as unstable (95% confidence interval (CI) = 12 to 34%), 37% as stable (95% CI = 25 to 50%), and 42% as uncertain (95% CI = 29 to 55%). Six (15%) of 41 subjects with APAET had ocular alignment classified as unstable (95% CI = 6 to 29%), 39% as stable (95% CI = 24 to 56%), and 46% as uncertain (95% CI = 31 to 63%). For IET, subjects who were older at presentation were less likely to have unstable angles than subjects who were younger at presentation (risk ratio for unstable vs. stable per additional month of age = 0.85, 99% CI = 0.74 to 0.99). Conclusions Ocular alignment instability is common in children with IET, ANAET and APAET. The impact of this finding

  1. Laboratory simulation of field-aligned currents

    NASA Technical Reports Server (NTRS)

    Wessel, Frank J.; Rostoker, Norman

    1993-01-01

    A summary of progress during the period Apr. 1992 to Mar. 1993 is provided. Objectives of the research are (1) to simulate, via laboratory experiments, the three terms of the field-aligned current equation; (2) to simulate auroral-arc formation processes by configuring the boundary conditions of the experimental chamber and plasma parameters to produce highly localized return currents at the end of a field-aligned current system; and (3) to extrapolate these results, using theoretical and computational techniques, to the problem of magnetospheric-ionospheric coupling and to compare them with published literature signatures of auroral-arc phenomena.

  2. Cell Alignment Driven by Mechanically Induced Collagen Fiber Alignment in Collagen/Alginate Coatings

    PubMed Central

    Chaubaroux, Christophe; Perrin-Schmitt, Fabienne; Senger, Bernard; Vidal, Loïc; Voegel, Jean-Claude; Schaaf, Pierre; Haikel, Youssef; Boulmedais, Fouzia; Lavalle, Philippe

    2015-01-01

    For many years it has been a major challenge to regenerate damaged tissues using synthetic or natural materials. To favor the healing processes after tendon, cornea, muscle, or brain injuries, aligned collagen-based architectures are of utmost interest. In this study, we define a novel aligned coating based on a collagen/alginate (COL/ALG) multilayer film. The coating exhibiting a nanofibrillar structure is cross-linked with genipin for stability in physiological conditions. By stretching COL/ALG-coated polydimethylsiloxane substrates, we developed a versatile method to align the collagen fibrils of the polymeric coating. Assays on cell morphology and alignment were performed to investigate the properties of these films. Microscopic assessments revealed that cells align with the stretched collagen fibrils of the coating. The degree of alignment is tuned by the stretching rate (i.e., the strain) of the COL/ALG-coated elastic substrate. Such coatings are of great interest for strategies that require aligned nanofibrillar biological material as a substrate for tissue engineering. PMID:25658028

  3. Reducing beam shaper alignment complexity: diagnostic techniques for alignment and tuning

    NASA Astrophysics Data System (ADS)

    Lizotte, Todd E.

    2011-10-01

    Safe and efficient optical alignment is a critical requirement for industrial laser systems used in a high volume manufacturing environment. Of specific interest is the development of techniques to align beam shaping optics within a beam line; having the ability to instantly verify by a qualitative means that each element is in its proper position as the beam shaper module is being aligned. There is a need to reduce these types of alignment techniques down to a level where even a newbie to optical alignment will be able to complete the task. Couple this alignment need with the fact that most laser system manufacturers ship their products worldwide and the introduction of a new set of variables including cultural and language barriers, makes this a top priority for manufacturers. Tools and methodologies for alignment of complex optical systems need to be able to cross these barriers to ensure the highest degree of up time and reduce the cost of maintenance on the production floor. Customers worldwide, who purchase production laser equipment, understand that the majority of costs to a manufacturing facility is spent on system maintenance and is typically the largest single controllable expenditure in a production plant. This desire to reduce costs is driving the trend these days towards predictive and proactive, not reactive maintenance of laser based optical beam delivery systems [10]. With proper diagnostic tools, laser system developers can develop proactive approaches to reduce system down time, safe guard operational performance and reduce premature or catastrophic optics failures. Obviously analytical data will provide quantifiable performance standards which are more precise than qualitative standards, but each have a role in determining overall optical system performance [10]. This paper will discuss the use of film and fluorescent mirror devices as diagnostic tools for beam shaper module alignment off line or in-situ. The paper will also provide an overview

  4. Soldering of Carbon Materials Using Transition Metal Rich Alloys.

    PubMed

    Burda, Marek; Lekawa-Raus, Agnieszka; Gruszczyk, Andrzej; Koziol, Krzysztof K K

    2015-08-25

    Joining of carbon materials via soldering has not been possible up to now due to lack of wetting of carbons by metals at standard soldering temperatures. This issue has been a severely restricting factor for many potential electrical/electronic and mechanical applications of nanostructured and conventional carbon materials. Here we demonstrate the formation of alloys that enable soldering of these structures. By addition of several percent (2.5-5%) of transition metal such as chromium or nickel to a standard lead-free soldering tin based alloy we obtained a solder that can be applied using a commercial soldering iron at typical soldering temperatures of approximately 350 °C and at ambient conditions. The use of this solder enables the formation of mechanically strong and electrically conductive joints between carbon materials and, when supported by a simple two-step technique, can successfully bond carbon structures to any metal terminal. It has been shown using optical and scanning electron microscope images as well as X-ray diffraction patterns and energy dispersive X-ray mapping that the successful formation of carbon-solder bonds is possible, first, thanks to the uniform nonreactive dispersion of transition metals in the tin-based matrix. Further, during the soldering process, these free elements diffuse into the carbon-alloy border with no formation of brazing-like carbides, which would damage the surface of the carbon materials. PMID:26256042

  5. Stability of metal-rich very massive stars

    NASA Astrophysics Data System (ADS)

    Goodman, J.; White, Christopher J.

    2016-02-01

    We revisit the stability of very massive non-rotating main-sequence stars at solar metallicity, with the goal of understanding whether radial pulsations set a physical upper limit to stellar mass. Models of up to 938 solar masses are constructed with the MESA code, and their linear stability in the fundamental mode, assumed to be the most dangerous, is analysed with a fully non-adiabatic method. Models above 100 M⊙ have extended tenuous atmospheres (`shelves') that affect the stability of the fundamental. Even when positive, this growth rate is small, in agreement with previous results. We argue that small growth rates lead to saturation at small amplitudes that are not dangerous to the star. A mechanism for saturation is demonstrated involving non-linear parametric coupling to short-wavelength g-modes and the damping of the latter by radiative diffusion. The shelves are subject to much more rapidly growing strange modes. This also agrees with previous results but is extended here to higher masses. The strange modes probably saturate via shocks rather than mode coupling but have very small amplitudes in the core, where almost all of the stellar mass resides. Although our stellar models are hydrostatic, the structure of their outer parts suggests that optically thick winds, driven by some combination of radiation pressure, transonic convection, and strange modes, are more likely than pulsation in the fundamental mode to limit the main-sequence lifetime.

  6. Ternary metal-rich sulfide with a layered structure

    DOEpatents

    Franzen, Hugo F.; Yao, Xiaoqiang

    1993-08-17

    A ternary Nb-Ta-S compound is provided having the atomic formula, Nb.sub.1.72 Ta.sub.3.28 S.sub.2, and exhibiting a layered structure in the sequence S-M3-M2-M1-M2-M3-S wherein S represents sulfur layers and M1, M2, and M3 represent Nb/Ta mixed metal layers. This sequence generates seven sheets stacked along the [001] direction of an approximate body centered cubic crystal structure with relatively weak sulfur-to-sulfur van der Waals type interactions between adjacent sulfur sheets and metal-to-metal bonding within and between adjacent mixed metal sheets.

  7. The old, massive, metal rich open cluster NGC 6791

    NASA Astrophysics Data System (ADS)

    Carraro, Giovanni

    2015-08-01

    NGC~6791 is a rich open cluster that attracted a lot of attention in the last decade. Recent estimates indicate that the mass is even larger, around 5000\\,$\\mathrm{M}_{\\odot}$. This is quite remarkable: the cluster is in fact 8\\,Gyr old, while the typical dissolution time for Galactic open clusters is a few Myr only. This might imply that the cluster managed to survive so long either because its original mass was much larger, or because it moved along a preferential orbit. In any case, such combination of old age and large mass is unique among Galactic open clusters, especially for clusters located in the inner regions of the Galactic disk. This is not the only special property of NGC 6791. Its abundance in iron is [Fe/H] $\\sim$ +0.40. again unique among Galactic star clusters of the same age range. Significant dispersions in various elements have been detected, that are not routinely found in Galactic open clusters. The combined UV flux of the few hot HB stars makes the cluster the closest proxy of an elliptical galaxy. This surprising result might indeed indicate that NGC 6791 was massive enough at origin to experience a strong burst of star formation and a fast enrichment.This pletora of unique properties renders NGC 6791 an extremely important object to study and understand.How and where could such a stellar system have formed? Is NGC 6791 just an open cluster? Did it form close to the bulge? How could have survived in the adverse, high-density, environment of the inner Galactic disk?These are difficult questions to answer to, of course. One of the still missing key observational evidence is whether the cluster suffered from tidal interaction, that could have significantly decreased its mass. We find such evidences, and use them as an argument to support a scenario in which the cluster formed as a massive object. We also estimate, using approximate analytic description based on available $N$-body models, how much mass NGC~6791 lost, and which was its probable mass at formation.

  8. Use a spreadsheet for turbomachinery alignment

    SciTech Connect

    Cassolato, B.M. , Sarnia, Ontario )

    1995-01-01

    Turbomachinery shaft alignment has an impact on plant profitability and safety. A simple sign error in the alignment process may incur days of production loss to correct, or worse if the mistake is undetected. Positioning large machinery, such as a centrifugal gas compressor weighing many tons to within thousandths of an inch, is laborious time-consuming work. Overhaul plans should specify the exact techniques, tools, desired results and quality assurance checks to be used in the alignment stages. The methods must be established by proven experience and best practices. The reverse indicator method is the most common precision alignment technique. The paper presents an instructional step-by-step development of a typical spreadsheet program for the reverse indicator method. The screen interface comprised of a cell range combining formulae and graphics provides the context for spreadsheet entries described in the following discussion. The worksheet is protected to disallow over-writing formulae and graphics, except in cell ranges reserved for input data. The program is designed to be user-friendly and comply with industry accepted practices. Special programming experience is not required of the operator.

  9. Microvariation in Accentual Alignment in Basque Spanish

    ERIC Educational Resources Information Center

    Elordieta, Gorka; Calleja, Nagore

    2005-01-01

    This paper presents patterns of accentual alignment in two varieties of Spanish spoken in the Basque Country: Lekeitio Spanish (LS), with speakers whose other native language is Lekeitio Basque (LB); and Vitoria Spanish (VS), with monolingual speakers of Spanish from the city of Vitoria. These patterns are compared to those of Madrid Spanish (MS),…

  10. Aligning Student Support with Achievement Goals. Perspective

    ERIC Educational Resources Information Center

    Wallace Foundation, The, 2006

    2006-01-01

    This Wallace Perspective paper summarizes key findings of a newly-published book, "Aligning Student Support with Achievement Goals: The Secondary Principal's Guide," that argues that school counselors could be much more active players in improving student learning. The book, which bases its conclusions heavily on Wallace's Transforming School…

  11. Therapeutic Exercise for Body Alignment and Function.

    ERIC Educational Resources Information Center

    Daniels, Lucille; Worthingham, Catherine

    This textbook is designed for the use of persons dealing with the problems of body alignment and function, primarily the physical therapist, the physical educator, and the physician. Those procedures are included that appear to be best suited for prevention of disability, improvement of impaired function, and maintenance of the optimum level of…

  12. Further solar alignments of Greek Byzantine churches

    NASA Astrophysics Data System (ADS)

    Liritzis, I.; Vasiliou, H.

    Following the recent work on the solar alignment of Greek byzantine churches (Liritzis and Vassiliou 2006 a,b,c) the solar orientations of twenty one more churches are presented. The question examined is if the day of solar rise across the eastern direction of the church is related with the feast day of Patron Saint. Measurements were carried out with magnetic compass, inclinometer, portable GPS and appropriate corrections for the solar declination. The alignments towards eastern sunrise were examined for various angular altitudes of the perceptible horizon. At least for all Rhodean churches the patron's day is met when sun oblique path crosses horizon a few degrees beyond the intersection of extrapolated eastern axis of the church with horizons skyline. Therefore, taken the orientation as the glitter of first sunrays -early dawn- correlation of thirteen present churches are aligned near the autumnal equinox, three have relation with the feast of patron saint, four are related to the other important feast of Christianity and one seem orientated randomly. However accounting for a due east sun position a few degrees above horizon in early liturgy hours (6:30 - 9:30 am) all the Rhodean alignments coincides with Saint's name day.

  13. Aligning English Language Testing with Curriculum

    ERIC Educational Resources Information Center

    Palacio, Marcela; Gaviria, Sandra; Brown, James Dean

    2016-01-01

    Frustrations with traditional testing led a group of teachers at the English for adults program at Universidad EAFIT (Colombia) to design tests aligned with the institutional teaching philosophy and classroom practices. This article reports on a study of an item-by-item evaluation of a series of English exams for validity and reliability in an…

  14. General Education Reform: Opportunities for Institutional Alignment

    ERIC Educational Resources Information Center

    Fuess, Scott M., Jr.; Mitchell, Nancy D.

    2011-01-01

    General education reform provides strategic opportunities for departments. This article analyzes reform at the University of Nebraska-Lincoln, illustrating how departments could use the reform process to clarify their strategic planning, align with institutional goals, and steer the university closer to departmental objectives. (Contains 1 table.)

  15. Aligning Technology Education Teaching with Brain Development

    ERIC Educational Resources Information Center

    Katsioloudis, Petros

    2015-01-01

    This exploratory study was designed to determine if there is a level of alignment between technology education curriculum and theories of intellectual development. The researcher compared Epstein's Brain Growth Theory and Piaget's Status of Intellectual Development with technology education curriculum from Australia, England, and the United…

  16. Alignment microscope for rotating laser scanner

    NASA Technical Reports Server (NTRS)

    Maciel, A., Jr.; Beck, J. C.

    1972-01-01

    Microscopic assembly for alignment of rotary laser focuses on small film area along scan line at oblique angle. Suitable choice of angle and location of optical components project laser beam line as X coordinate reticle. Coordination with horizontal recticle line included microscope facilitates Y coordinate position indexing.

  17. Graph-based molecular alignment (GMA).

    PubMed

    Marialke, J; Körner, R; Tietze, S; Apostolakis, Joannis

    2007-01-01

    We describe a combined 2D/3D approach for the superposition of flexible chemical structures, which is based on recent progress in the efficient identification of common subgraphs and a gradient-based torsion space optimization algorithm. The simplicity of the approach is reflected in its generality and computational efficiency: the suggested approach neither requires precalculated statistics on the conformations of the molecules nor does it make simplifying assumptions on the topology of the molecules being compared. Furthermore, graph-based molecular alignment produces alignments that are consistent with the chemistry of the molecules as well as their general structure, as it depends on both the local connectivities between atoms and the overall topology of the molecules. We validate this approach on benchmark sets taken from the literature and show that it leads to good results compared to computationally and algorithmically more involved methods. The results suggest that, for most practical purposes, graph-based molecular alignment is a viable alternative to molecular field alignment with respect to structural superposition and leads to structures of comparable quality in a fraction of the time. PMID:17381175

  18. Aligned genomic data compression via improved modeling.

    PubMed

    Ochoa, Idoia; Hernaez, Mikel; Weissman, Tsachy

    2014-12-01

    With the release of the latest Next-Generation Sequencing (NGS) machine, the HiSeq X by Illumina, the cost of sequencing the whole genome of a human is expected to drop to a mere $1000. This milestone in sequencing history marks the era of affordable sequencing of individuals and opens the doors to personalized medicine. In accord, unprecedented volumes of genomic data will require storage for processing. There will be dire need not only of compressing aligned data, but also of generating compressed files that can be fed directly to downstream applications to facilitate the analysis of and inference on the data. Several approaches to this challenge have been proposed in the literature; however, focus thus far has been on the low coverage regime and most of the suggested compressors are not based on effective modeling of the data. We demonstrate the benefit of data modeling for compressing aligned reads. Specifically, we show that, by working with data models designed for the aligned data, we can improve considerably over the best compression ratio achieved by previously proposed algorithms. Our results indicate that the pareto-optimal barrier for compression rate and speed claimed by Bonfield and Mahoney (2013) [Bonfield JK and Mahoneys MV, Compression of FASTQ and SAM format sequencing data, PLOS ONE, 8(3):e59190, 2013.] does not apply for high coverage aligned data. Furthermore, our improved compression ratio is achieved by splitting the data in a manner conducive to operations in the compressed domain by downstream applications.

  19. Aligned genomic data compression via improved modeling.

    PubMed

    Ochoa, Idoia; Hernaez, Mikel; Weissman, Tsachy

    2014-12-01

    With the release of the latest Next-Generation Sequencing (NGS) machine, the HiSeq X by Illumina, the cost of sequencing the whole genome of a human is expected to drop to a mere $1000. This milestone in sequencing history marks the era of affordable sequencing of individuals and opens the doors to personalized medicine. In accord, unprecedented volumes of genomic data will require storage for processing. There will be dire need not only of compressing aligned data, but also of generating compressed files that can be fed directly to downstream applications to facilitate the analysis of and inference on the data. Several approaches to this challenge have been proposed in the literature; however, focus thus far has been on the low coverage regime and most of the suggested compressors are not based on effective modeling of the data. We demonstrate the benefit of data modeling for compressing aligned reads. Specifically, we show that, by working with data models designed for the aligned data, we can improve considerably over the best compression ratio achieved by previously proposed algorithms. Our results indicate that the pareto-optimal barrier for compression rate and speed claimed by Bonfield and Mahoney (2013) [Bonfield JK and Mahoneys MV, Compression of FASTQ and SAM format sequencing data, PLOS ONE, 8(3):e59190, 2013.] does not apply for high coverage aligned data. Furthermore, our improved compression ratio is achieved by splitting the data in a manner conducive to operations in the compressed domain by downstream applications. PMID:25395305

  20. Alignment of the ATLAS silicon tracker

    NASA Astrophysics Data System (ADS)

    Morley, Anthony

    2008-10-01

    ATLAS is one of the four experiments currently under preparation at Large Hadron Collider. Charged particle track reconstruction in the ATLAS Inner Detector is performed both with silicon and drift-tube-based detectors. The alignment of the ATLAS tracking system is one of the challenges that the experiment must overcome in order to achieve its physics goals. This requires the determination of almost 35 000 degrees of freedom. The precision required for the most sensitive coordinate of the silicon devices is of the order of few microns. This precision will be attained with a combination of two techniques: a hardware system with Frequency Scan Interferometers, and track-based alignment. The latter requires the application of complex alignment algorithms that can be both CPU and memory intensive due to the possible requirement of large matrix inversion or many iterations. The alignment algorithms have been already exercised on several challenges such as a Combined Test Beam, cosmic ray runs and large scale computing simulation of physics samples. This note reports on the methods, their computing requirements and preliminary results.

  1. Constructing Aligned Assessments Using Automated Test Construction

    ERIC Educational Resources Information Center

    Porter, Andrew; Polikoff, Morgan S.; Barghaus, Katherine M.; Yang, Rui

    2013-01-01

    We describe an innovative automated test construction algorithm for building aligned achievement tests. By incorporating the algorithm into the test construction process, along with other test construction procedures for building reliable and unbiased assessments, the result is much more valid tests than result from current test construction…

  2. Strain-Induced Alignment in Collagen Gels

    PubMed Central

    Vader, David; Kabla, Alexandre; Weitz, David; Mahadevan, Lakshminarayana

    2009-01-01

    Collagen is the most abundant extracellular-network-forming protein in animal biology and is important in both natural and artificial tissues, where it serves as a material of great mechanical versatility. This versatility arises from its almost unique ability to remodel under applied loads into anisotropic and inhomogeneous structures. To explore the origins of this property, we develop a set of analysis tools and a novel experimental setup that probes the mechanical response of fibrous networks in a geometry that mimics a typical deformation profile imposed by cells in vivo. We observe strong fiber alignment and densification as a function of applied strain for both uncrosslinked and crosslinked collagenous networks. This alignment is found to be irreversibly imprinted in uncrosslinked collagen networks, suggesting a simple mechanism for tissue organization at the microscale. However, crosslinked networks display similar fiber alignment and the same geometrical properties as uncrosslinked gels, but with full reversibility. Plasticity is therefore not required to align fibers. On the contrary, our data show that this effect is part of the fundamental non-linear properties of fibrous biological networks. PMID:19529768

  3. Bokeh mirror alignment for Cherenkov telescopes

    NASA Astrophysics Data System (ADS)

    Ahnen, M. L.; Baack, D.; Balbo, M.; Bergmann, M.; Biland, A.; Blank, M.; Bretz, T.; Bruegge, K. A.; Buss, J.; Domke, M.; Dorner, D.; Einecke, S.; Hempfling, C.; Hildebrand, D.; Hughes, G.; Lustermann, W.; Mannheim, K.; Mueller, S. A.; Neise, D.; Neronov, A.; Noethe, M.; Overkemping, A.-K.; Paravac, A.; Pauss, F.; Rhode, W.; Shukla, A.; Temme, F.; Thaele, J.; Toscano, S.; Vogler, P.; Walter, R.; Wilbert, A.

    2016-09-01

    Imaging Atmospheric Cherenkov Telescopes (IACTs) need imaging optics with large apertures and high image intensities to map the faint Cherenkov light emitted from cosmic ray air showers onto their image sensors. Segmented reflectors fulfill these needs, and composed from mass production mirror facets they are inexpensive and lightweight. However, as the overall image is a superposition of the individual facet images, alignment remains a challenge. Here we present a simple, yet extendable method, to align a segmented reflector using its Bokeh. Bokeh alig nment does not need a star or good weather nights but can be done even during daytime. Bokeh alignment optimizes the facet orientations by comparing the segmented reflectors Bokeh to a predefined template. The optimal Bokeh template is highly constricted by the reflector's aperture and is easy accessible. The Bokeh is observed using the out of focus image of a near by point like light source in a distance of about 10 focal lengths. We introduce Bokeh alignment on segmented reflectors and demonstrate it on the First Geiger-mode Avalanche Cherenkov Telescope (FACT) on La Palma, Spain.

  4. Thematic Roles, Markedness Alignment and Processing Complexity

    ERIC Educational Resources Information Center

    Lee, Yoonhyoung; Kwon, Youan; Gordon, Peter C.

    2015-01-01

    Two experiments used eye-tracking during reading to investigate the role of the consistency of the relative markedness alignment of noun phrases (NPs) in the processing of complex sentences in Korean. To do so, the animacy of the first NP was varied in both experiments to manipulate the relative markedness of NPs. In addition, case markings of the…

  5. Linear Collider Accelerator Physics Issues Regarding Alignment

    SciTech Connect

    Seeman, J.T.; /SLAC

    2005-08-12

    The next generation of linear colliders will require more stringent alignment tolerances than those for the SLC with regard to the accelerating structures, quadrupoles, and beam position monitors. New techniques must be developed to achieve these tolerances. A combination of mechanical-electrical and beam-based methods will likely be needed.

  6. Quasiparticle Level Alignment for Photocatalytic Interfaces

    SciTech Connect

    Migani, Annapaola; Mowbray, Duncan J.; Zhao, Jin; Petek, Hrvoje; Rubio, Angel

    2014-05-13

    Electronic level alignment at the interface between an adsorbed molecular layer and a semiconducting substrate determines the activity and efficiency of many photocatalytic materials. Standard density functional theory (DFT)-based methods have proven unable to provide a quantitative description of this level alignment. This requires a proper treatment of the anisotropic screening, necessitating the use of quasiparticle (QP) techniques. However, the computational complexity of QP algorithms has meant a quantitative description of interfacial levels has remained elusive. We provide a systematic study of a prototypical interface, bare and methanol-covered rutile TiO2(110) surfaces, to determine the type of many-body theory required to obtain an accurate description of the level alignment. This is accomplished via a direct comparison with metastable impact electron spectroscopy (MIES), ultraviolet photoelectron spectroscopy (UPS), and two-photon photoemission (2PP) spectroscopy. We consider GGA DFT, hybrid DFT, and G0W0, scQPGW1, scQPGW0, and scQPGW QP calculations. Our results demonstrate that G0W0, or our recently introduced scQPGW1 approach, are required to obtain the correct alignment of both the highest occupied and lowest unoccupied interfacial molecular levels (HOMO/LUMO). These calculations set a new standard in the interpretation of electronic structure probe experiments of complex organic molecule/semiconductor interfaces.

  7. Methodological Alignment in Design-Based Research

    ERIC Educational Resources Information Center

    Hoadley, Christopher M.

    2004-01-01

    Empirical research is all about trying to model and predict the world. In this article, I discuss how design-based research methods can help do this effectively. In particular, design-based research methods can help with the problem of methodological alignment: ensuring that the research methods we use actually test what we think they are testing.…

  8. Test procedure for calibration, grooming and alignment of the LDUA Optical Alignment Scope

    SciTech Connect

    Potter, J.D.

    1995-12-07

    The Light Duty Utility Arm (LDUA) is a remotely operated manipulator used to enter into underground waste tanks through one of the tank risers. The LDUA must be carefully aligned with the tank riser during the installation process. The Optical Alignment Scope (OAS) is used to determine when optimum alignment has been achieved between the LDUA and the riser. This procedure is used to assure that the instrumentation and equipment comprising the OAS is properly adjusted in order to achieve its intended functions successfully.

  9. Kernel Manifold Alignment for Domain Adaptation.

    PubMed

    Tuia, Devis; Camps-Valls, Gustau

    2016-01-01

    The wealth of sensory data coming from different modalities has opened numerous opportunities for data analysis. The data are of increasing volume, complexity and dimensionality, thus calling for new methodological innovations towards multimodal data processing. However, multimodal architectures must rely on models able to adapt to changes in the data distribution. Differences in the density functions can be due to changes in acquisition conditions (pose, illumination), sensors characteristics (number of channels, resolution) or different views (e.g. street level vs. aerial views of a same building). We call these different acquisition modes domains, and refer to the adaptation problem as domain adaptation. In this paper, instead of adapting the trained models themselves, we alternatively focus on finding mappings of the data sources into a common, semantically meaningful, representation domain. This field of manifold alignment extends traditional techniques in statistics such as canonical correlation analysis (CCA) to deal with nonlinear adaptation and possibly non-corresponding data pairs between the domains. We introduce a kernel method for manifold alignment (KEMA) that can match an arbitrary number of data sources without needing corresponding pairs, just few labeled examples in all domains. KEMA has interesting properties: 1) it generalizes other manifold alignment methods, 2) it can align manifolds of very different complexities, performing a discriminative alignment preserving each manifold inner structure, 3) it can define a domain-specific metric to cope with multimodal specificities, 4) it can align data spaces of different dimensionality, 5) it is robust to strong nonlinear feature deformations, and 6) it is closed-form invertible, which allows transfer across-domains and data synthesis. To authors' knowledge this is the first method addressing all these important issues at once. We also present a reduced-rank version of KEMA for computational

  10. Kernel Manifold Alignment for Domain Adaptation

    PubMed Central

    Tuia, Devis; Camps-Valls, Gustau

    2016-01-01

    The wealth of sensory data coming from different modalities has opened numerous opportunities for data analysis. The data are of increasing volume, complexity and dimensionality, thus calling for new methodological innovations towards multimodal data processing. However, multimodal architectures must rely on models able to adapt to changes in the data distribution. Differences in the density functions can be due to changes in acquisition conditions (pose, illumination), sensors characteristics (number of channels, resolution) or different views (e.g. street level vs. aerial views of a same building). We call these different acquisition modes domains, and refer to the adaptation problem as domain adaptation. In this paper, instead of adapting the trained models themselves, we alternatively focus on finding mappings of the data sources into a common, semantically meaningful, representation domain. This field of manifold alignment extends traditional techniques in statistics such as canonical correlation analysis (CCA) to deal with nonlinear adaptation and possibly non-corresponding data pairs between the domains. We introduce a kernel method for manifold alignment (KEMA) that can match an arbitrary number of data sources without needing corresponding pairs, just few labeled examples in all domains. KEMA has interesting properties: 1) it generalizes other manifold alignment methods, 2) it can align manifolds of very different complexities, performing a discriminative alignment preserving each manifold inner structure, 3) it can define a domain-specific metric to cope with multimodal specificities, 4) it can align data spaces of different dimensionality, 5) it is robust to strong nonlinear feature deformations, and 6) it is closed-form invertible, which allows transfer across-domains and data synthesis. To authors’ knowledge this is the first method addressing all these important issues at once. We also present a reduced-rank version of KEMA for computational

  11. Interstellar Silicate Dust: Modeling and Grain Alignment

    NASA Astrophysics Data System (ADS)

    Das, Indrajit

    We examine some aspects of the alignment of silicate dust grains with respect to the interstellar magnetic field. First, we consider possible observational constraints on the magnetic properties of the grains. Second, we investigate the role of collisions with gas atoms and the production of H2 molecules on the grain surface in the alignment process when the grain is drifting in the gaseous medium. Paramagnetism associated with Fe content in the dust is thought to play a critical role in alignment. Min et al (2007) claimed that the Fe content of the silicate dust can be constrained by the shape of the 10 μm extinction feature. They found low Fe abundances, potentially posing problems for grain alignment theories. We revisit this analysis modeling the grains with irregularly shaped Gaussian Random Sphere (GRS). We give a comprehensive review of all the relevant constraints researchers apply and discuss their effects on the inferred mineralogy. Also, we extend this analysis to examine whether constraints can be placed on the presence of Fe-rich inclusions which could yield "super-paramagnetism". This possibility has long been speculated, but so far observational constraints are lacking. Every time a gas atom collides with a grain, the grain's angular momentum is slightly modified. Likewise when an H2 molecule forms on the surface and is ejected. Here also we model the grain with GRS shape and considered various scenarios about how the colliding gas particles depart the grain. We develop theoretical and computational tools to estimate the torques associated with these aforementioned events for a range of grain drift speeds---from low subsonic to high supersonic speeds. Code results were verified with spherical grain for which analytical results were available. Finally, the above torque results were used to study the grain rotational dynamics. Solving dynamical equations we examine how these torques influence the grain alignment process. Our analysis suggests that

  12. Multiple Whole Genome Alignments Without a Reference Organism

    SciTech Connect

    Dubchak, Inna; Poliakov, Alexander; Kislyuk, Andrey; Brudno, Michael

    2009-01-16

    Multiple sequence alignments have become one of the most commonly used resources in genomics research. Most algorithms for multiple alignment of whole genomes rely either on a reference genome, against which all of the other sequences are laid out, or require a one-to-one mapping between the nucleotides of the genomes, preventing the alignment of recently duplicated regions. Both approaches have drawbacks for whole-genome comparisons. In this paper we present a novel symmetric alignment algorithm. The resulting alignments not only represent all of the genomes equally well, but also include all relevant duplications that occurred since the divergence from the last common ancestor. Our algorithm, implemented as a part of the VISTA Genome Pipeline (VGP), was used to align seven vertebrate and sixDrosophila genomes. The resulting whole-genome alignments demonstrate a higher sensitivity and specificity than the pairwise alignments previously available through the VGP and have higher exon alignment accuracy than comparable public whole-genome alignments. Of the multiple alignment methods tested, ours performed the best at aligning genes from multigene families?perhaps the most challenging test for whole-genome alignments. Our whole-genome multiple alignments are available through the VISTA Browser at http://genome.lbl.gov/vista/index.shtml.

  13. Robust temporal alignment of multimodal cardiac sequences

    NASA Astrophysics Data System (ADS)

    Perissinotto, Andrea; Queirós, Sandro; Morais, Pedro; Baptista, Maria J.; Monaghan, Mark; Rodrigues, Nuno F.; D'hooge, Jan; Vilaça, João. L.; Barbosa, Daniel

    2015-03-01

    Given the dynamic nature of cardiac function, correct temporal alignment of pre-operative models and intraoperative images is crucial for augmented reality in cardiac image-guided interventions. As such, the current study focuses on the development of an image-based strategy for temporal alignment of multimodal cardiac imaging sequences, such as cine Magnetic Resonance Imaging (MRI) or 3D Ultrasound (US). First, we derive a robust, modality-independent signal from the image sequences, estimated by computing the normalized cross-correlation between each frame in the temporal sequence and the end-diastolic frame. This signal is a resembler for the left-ventricle (LV) volume curve over time, whose variation indicates different temporal landmarks of the cardiac cycle. We then perform the temporal alignment of these surrogate signals derived from MRI and US sequences of the same patient through Dynamic Time Warping (DTW), allowing to synchronize both sequences. The proposed framework was evaluated in 98 patients, which have undergone both 3D+t MRI and US scans. The end-systolic frame could be accurately estimated as the minimum of the image-derived surrogate signal, presenting a relative error of 1.6 +/- 1.9% and 4.0 +/- 4.2% for the MRI and US sequences, respectively, thus supporting its association with key temporal instants of the cardiac cycle. The use of DTW reduces the desynchronization of the cardiac events in MRI and US sequences, allowing to temporally align multimodal cardiac imaging sequences. Overall, a generic, fast and accurate method for temporal synchronization of MRI and US sequences of the same patient was introduced. This approach could be straightforwardly used for the correct temporal alignment of pre-operative MRI information and intra-operative US images.

  14. Far-field detection system for laser beams alignment and crystals alignment

    NASA Astrophysics Data System (ADS)

    Liu, D.; Qin, H.; Zhu, B.

    2015-08-01

    Laser beams far-field alignment is very important for the high power laser facility as well as the frequency doubling crystals adjustment. Traditional beams alignment system and crystals alignment system are separated. That means, they use different optical image systems and CCD cameras, which will occupy larger space and use more money. A new farfield detection system of laser beams is presented with a big diffraction grating (37mm*37mm), a set of optical imaging components and a high resolution CCD camera. This detection system, which is fully demonstrated on the National Laser Facility of Israel, can align high power laser facility beams' direction as well as the frequency doubling crystals. The new system occupies small space in the spatial filter through off-axial grating sampling. The experimental results indicate that the average far-field alignment error is less than 5% of spatial filter pinhole diameter, and the average crystals' matching angle error is less than 10urad, which meet the alignment system requirements for beams and crystals.

  15. Two Influential Primate Classifications Logically Aligned

    PubMed Central

    Franz, Nico M.; Pier, Naomi M.; Reeder, Deeann M.; Chen, Mingmin; Yu, Shizhuo; Kianmajd, Parisa; Bowers, Shawn; Ludäscher, Bertram

    2016-01-01

    Classifications and phylogenies of perceived natural entities change in the light of new evidence. Taxonomic changes, translated into Code-compliant names, frequently lead to name:meaning dissociations across succeeding treatments. Classification standards such as the Mammal Species of the World (MSW) may experience significant levels of taxonomic change from one edition to the next, with potential costs to long-term, large-scale information integration. This circumstance challenges the biodiversity and phylogenetic data communities to express taxonomic congruence and incongruence in ways that both humans and machines can process, that is, to logically represent taxonomic alignments across multiple classifications. We demonstrate that such alignments are feasible for two classifications of primates corresponding to the second and third MSW editions. Our approach has three main components: (i) use of taxonomic concept labels, that is name sec. author (where sec. means according to), to assemble each concept hierarchy separately via parent/child relationships; (ii) articulation of select concepts across the two hierarchies with user-provided Region Connection Calculus (RCC-5) relationships; and (iii) the use of an Answer Set Programming toolkit to infer and visualize logically consistent alignments of these input constraints. Our use case entails the Primates sec. Groves (1993; MSW2–317 taxonomic concepts; 233 at the species level) and Primates sec. Groves (2005; MSW3–483 taxonomic concepts; 376 at the species level). Using 402 RCC-5 input articulations, the reasoning process yields a single, consistent alignment and 153,111 Maximally Informative Relations that constitute a comprehensive meaning resolution map for every concept pair in the Primates sec. MSW2/MSW3. The complete alignment, and various partitions thereof, facilitate quantitative analyses of name:meaning dissociation, revealing that nearly one in three taxonomic names are not reliable across

  16. Tool for Inspecting Alignment of Twinaxial Connectors

    NASA Technical Reports Server (NTRS)

    Smith, Christopher R.

    2008-01-01

    A proposed tool would be used to inspect alignments of mating twinaxial-connector assemblies on interconnecting wiring harnesses. More specifically, the tool would be used to inspect the alignment of each contact pin of each connector on one assembly with the corresponding socket in the corresponding connector on the other assembly. It is necessary to inspect the alignment because if mating of the assemblies is attempted when any pin/socket pair is misaligned beyond tolerance, the connection will not be completed and the dielectric material in the socket will be damaged (see Figure 1). Although the basic principle of the tool is applicable to almost any type of mating connector assemblies, the specific geometry of the tool must match the pin-and-socket geometry of the specific mating assemblies to be inspected. In the original application for which the tool was conceived, each of the mating assemblies contains eight twinaxial connectors; the pin diameter is 0.014 in. (.0.35 mm), and the maximum allowable pin/socket misalignment is 0.007 in. (.0.18 mm). Incomplete connections can result in loss of flight data within the functional path to the space shuttle crew cockpit displays. The tool (see Figure 2) would consist mainly of a transparent disk with alignment clocking tabs that can be fitted onto either connector assembly. Sets of circles or equivalent reference markings are affixed to the face of the tool, located at the desired positions of the mating contact pairs. An inspector would simply fit the tool onto a connector assembly, engaging the clocking tabs until the tool fits tightly. The inspector would then align one set of circles positioning a line of sight perpendicular to one contact within the connector assembly. Mis alignments would be evidenced by the tip of a pin contact straying past the inner edge of the circle. Socket contact misalignments would be evidenced by a crescent-shaped portion of the white dielectric appearing within the circle. The tool

  17. Assembly and alignment of infrared refractive system

    NASA Astrophysics Data System (ADS)

    Yang, Lin; Lin, Jian-chun; Wang, Ya-jing; Chen, Fan-sheng

    2013-09-01

    Optical systems for scientific instrumentation frequently include lens or mirrors with critical mechanical requirements. Position issues of those components are inextricably bound to the efficiency of the instrument. The position referring to the lens system mainly means spacer and rotation of all elements concerned. Instrument could not be completed without the accuracy assembly even the previous design was top one. The alignment of infrared optical system always is a tough thing due to the IR material being opaque to visible light which hardly effect on the imaging ability of the system. In this paper a large-aperture IR refractive system was described in details and the alignment of this system was presented. The brief work describes the assembly and integration of the camera barrel in lab. First of all, all the mechanical elements must be manufactured with high accuracy requirements to meet alignment tolerances and minimum errors mostly could be ignored. The rotations relative to the optical axis were hardy restricted by the space between barrel and cells. The lens vertex displacements were determined through high accuracy titanium alloy spacer. So the actual shape data of the optical lenses were obtained by coordinate measuring machining (CMM) to calculate the real space between lenses after alignment1 done. All the measured results were critical for instruction of the practical assemble. Based on the properties and tolerances of the system, the camera barrel includes sets of six lenses with their respective supports and cells which are composed of two parts: the flied lens group and the relay lenses group. The first one was aligned by the geometry centering used CMM. And the relay lenses were integrated one by one after centered individually with a classical centering instrument. Then the two separate components were assembled under the monitor of the CMM with micron precision. Three parameters on the opti-mechanical elements which include decenter, tilt and

  18. Two Influential Primate Classifications Logically Aligned.

    PubMed

    Franz, Nico M; Pier, Naomi M; Reeder, Deeann M; Chen, Mingmin; Yu, Shizhuo; Kianmajd, Parisa; Bowers, Shawn; Ludäscher, Bertram

    2016-07-01

    Classifications and phylogenies of perceived natural entities change in the light of new evidence. Taxonomic changes, translated into Code-compliant names, frequently lead to name:meaning dissociations across succeeding treatments. Classification standards such as the Mammal Species of the World (MSW) may experience significant levels of taxonomic change from one edition to the next, with potential costs to long-term, large-scale information integration. This circumstance challenges the biodiversity and phylogenetic data communities to express taxonomic congruence and incongruence in ways that both humans and machines can process, that is, to logically represent taxonomic alignments across multiple classifications. We demonstrate that such alignments are feasible for two classifications of primates corresponding to the second and third MSW editions. Our approach has three main components: (i) use of taxonomic concept labels, that is name sec. author (where sec. means according to), to assemble each concept hierarchy separately via parent/child relationships; (ii) articulation of select concepts across the two hierarchies with user-provided Region Connection Calculus (RCC-5) relationships; and (iii) the use of an Answer Set Programming toolkit to infer and visualize logically consistent alignments of these input constraints. Our use case entails the Primates sec. Groves (1993; MSW2-317 taxonomic concepts; 233 at the species level) and Primates sec. Groves (2005; MSW3-483 taxonomic concepts; 376 at the species level). Using 402 RCC-5 input articulations, the reasoning process yields a single, consistent alignment and 153,111 Maximally Informative Relations that constitute a comprehensive meaning resolution map for every concept pair in the Primates sec. MSW2/MSW3. The complete alignment, and various partitions thereof, facilitate quantitative analyses of name:meaning dissociation, revealing that nearly one in three taxonomic names are not reliable across treatments

  19. Shod wear and foot alignment in clinical gait analysis.

    PubMed

    Louey, Melissa Gar Yee; Sangeux, Morgan

    2016-09-01

    Sagittal plane alignment of the foot presents challenges when the subject wears shoes during gait analysis. Typically, visual alignment is performed by positioning two markers, the heel and toe markers, aligned with the foot within the shoe. Alternatively, software alignment is possible when the sole of the shoe lies parallel to the ground, and the change in the shoe's sole thickness is measured and entered as a parameter. The aim of this technical note was to evaluate the accuracy of visual and software foot alignment during shod gait analysis. We calculated the static standing ankle angles of 8 participants (mean age: 8.7 years, SD: 2.9 years) wearing bilateral solid ankle foot orthoses (BSAFOs) with and without shoes using the visual and software alignment methods. All participants were able to stand with flat feet in both static trials and the ankle angles obtained in BSAFOs without shoes was considered the reference. We showed that the current implementation of software alignment introduces a bias towards more ankle dorsiflexion, mean=3°, SD=3.4°, p=0.006, and proposed an adjusted software alignment method. We found no statistical differences using visual alignment and adjusted software alignment between the shoe and shoeless conditions, p=0.19 for both. Visual alignment or adjusted software alignment are advised to represent foot alignment accurately.

  20. Shod wear and foot alignment in clinical gait analysis.

    PubMed

    Louey, Melissa Gar Yee; Sangeux, Morgan

    2016-09-01

    Sagittal plane alignment of the foot presents challenges when the subject wears shoes during gait analysis. Typically, visual alignment is performed by positioning two markers, the heel and toe markers, aligned with the foot within the shoe. Alternatively, software alignment is possible when the sole of the shoe lies parallel to the ground, and the change in the shoe's sole thickness is measured and entered as a parameter. The aim of this technical note was to evaluate the accuracy of visual and software foot alignment during shod gait analysis. We calculated the static standing ankle angles of 8 participants (mean age: 8.7 years, SD: 2.9 years) wearing bilateral solid ankle foot orthoses (BSAFOs) with and without shoes using the visual and software alignment methods. All participants were able to stand with flat feet in both static trials and the ankle angles obtained in BSAFOs without shoes was considered the reference. We showed that the current implementation of software alignment introduces a bias towards more ankle dorsiflexion, mean=3°, SD=3.4°, p=0.006, and proposed an adjusted software alignment method. We found no statistical differences using visual alignment and adjusted software alignment between the shoe and shoeless conditions, p=0.19 for both. Visual alignment or adjusted software alignment are advised to represent foot alignment accurately. PMID:27420611

  1. Tevatron alignment issues 2003-2004

    SciTech Connect

    Volk, J.T.; Annala, J.; Elementi, L.; Gelfand, N.; Gollwitzer, K.E.; Greenwood, J.; Martens, M.; Moore, Craig D.; Nobrega, A.; Russell, A.D.; Shiltsev, V.; Stefanski, R.; Sager, T.; Syphers, M.J.; Wojcik, G.; /Fermilab

    2005-01-01

    It was observed during the early part of Run II that dipole corrector currents in the Tevatron were changing over time. Measurement of the roll for dipoles and quadrupoles confirmed that there was a slow and systematic movement of the magnets from their ideal position. A simple system using a digital protractor and laptop computer was developed to allow roll measurements of all dipoles and quadrupoles. These measurements showed that many magnets in the Tevatron had rolled more than 1 milliradian. To aid in magnet alignment a new survey network was built in the Tevatron tunnel. This network is based on the use of free centering laser tracker. During the measurement of the network coordinates for all dipole, quadrupole and corrector magnets were obtained. This paper discusses roll measurement techniques and data, the old and new Tevatron alignment network.

  2. Aligning the demonstration model of CHEOPS

    NASA Astrophysics Data System (ADS)

    Bergomi, M.; Biondi, F.; Marafatto, L.; Dima, M.; Greggio, D.; Farinato, J.; Magrin, D.; Ragazzoni, R.; Viotto, V.; Gullieuszik, M.; Farisato, G.; Lessio, L.; Portaluri, E.; Munari, M.; Pagano, I.; Marinai, M.; Novi, A.; Pompei, C.; Piazza, D.; Beck, T.; Cessa, V.; Benz, W.

    2016-07-01

    CHEOPS (CHaracterizing ExOPlanets Satellite) is an ESA Small Mission, planned to be launched in mid-2018 and whose main goal is the photometric precise characterization of radii of exoplanets orbiting bright stars (V<12) already known to host planets. Given the fast-track nature of this mission, we developed a non-flying Demonstration Model, whose optics are flight representative and whose mechanics provides the same interfaces of the flight model, but is not thermally representative. In this paper, we describe CHEOPS Demonstration Model handling, integration, tests, alignment and characterization, emphasizing the verification of the uncertainties in the optical quality measurements introduced by the starlight simulator and the way the alignment and optical surfaces are measured.

  3. An Alignment Model for Collaborative Value Networks

    NASA Astrophysics Data System (ADS)

    Bremer, Carlos; Azevedo, Rodrigo Cambiaghi; Klen, Alexandra Pereira

    This paper presents parts of the work carried out in several global organizations through the development of strategic projects with high tactical and operational complexity. By investing in long-term relationships, strongly operating in the transformation of the competitive model and focusing on the value chain management, the main aim of these projects was the alignment of multiple value chains. The projects were led by the Axia Transformation Methodology as well as by its Management Model and following the principles of Project Management. As a concrete result of the efforts made in the last years in the Brazilian market this work also introduces the Alignment Model which supports the transformation process that the companies undergo.

  4. Alignment of the Fermilab D0 Detector

    SciTech Connect

    Babatunde O'Sheg Oshinowo

    2001-07-20

    The Fermilab D0 detector was used for the discovery of the top quark during Run I in 1996. It is currently being upgraded to exploit the physics potential to be presented by the Main Injector and the Tevatron Collider during Run II in the Fall of 2000. Some of the essential elements of this upgrade is the upgrade of the Solenoid Magnet, the Central Fiber Tracker, the Preshower Detectors, the Calorimeter System, and the Muon System. This paper discusses the survey and alignment of the these detectors with emphasis on the Muon detector system. The alignment accuracy is specified as better than 0.5mm. A combination of the Laser Tracker, BETS, and V-STARS systems are used for the survey.

  5. Strategies and tools for whole genome alignments

    SciTech Connect

    Couronne, Olivier; Poliakov, Alexander; Bray, Nicolas; Ishkhanov,Tigran; Ryaboy, Dmitriy; Rubin, Edward; Pachter, Lior; Dubchak, Inna

    2002-11-25

    The availability of the assembled mouse genome makespossible, for the first time, an alignment and comparison of two largevertebrate genomes. We have investigated different strategies ofalignment for the subsequent analysis of conservation of genomes that areeffective for different quality assemblies. These strategies were appliedto the comparison of the working draft of the human genome with the MouseGenome Sequencing Consortium assembly, as well as other intermediatemouse assemblies. Our methods are fast and the resulting alignmentsexhibit a high degree of sensitivity, covering more than 90 percent ofknown coding exons in the human genome. We have obtained such coveragewhile preserving specificity. With a view towards the end user, we havedeveloped a suite of tools and websites for automatically aligning, andsubsequently browsing and working with whole genome comparisons. Wedescribe the use of these tools to identify conserved non-coding regionsbetween the human and mouse genomes, some of which have not beenidentified by other methods.

  6. Aligning Astronomical Telescopes via Identification of Stars

    NASA Technical Reports Server (NTRS)

    Whorton, Mark

    2010-01-01

    A proposed method of automated, precise alignment of a ground-based astronomical telescope would eliminate the need for initial manual alignment. The method, based on automated identification of known stars and other celestial objects in the telescope field of view, would also eliminate the need for an initial estimate of the aiming direction. The method does not require any equipment other than a digital imaging device such as a charge-coupled-device digital imaging camera and control computers of the telescope and camera, all of which are standard components in professional astronomical telescope systems and in high-end amateur astronomical telescope systems. The method could be implemented in software running in the telescope or camera control computer or in an external computer communicating with the telescope pointing mount and camera control computers.

  7. Stakeholder Alignment and Changing Geospatial Information Capabilities

    NASA Astrophysics Data System (ADS)

    Winter, S.; Cutcher-Gershenfeld, J.; King, J. L.

    2015-12-01

    Changing geospatial information capabilities can have major economic and social effects on activities such as drought monitoring, weather forecasts, agricultural productivity projections, water and air quality assessments, the effects of forestry practices and so on. Whose interests are served by such changes? Two common mistakes are assuming stability in the community of stakeholders and consistency in stakeholder behavior. Stakeholder communities can reconfigure dramatically as some leave the discussion, others enter, and circumstances shift — all resulting in dynamic points of alignment and misalignment . New stakeholders can bring new interests, and existing stakeholders can change their positions. Stakeholders and their interests need to be be considered as geospatial information capabilities change, but this is easier said than done. New ways of thinking about stakeholder alignment in light of changes in capability are presented.

  8. Internal Alignment of the SLD Vertex Detector

    SciTech Connect

    Jackson, D.J.; Wickens, F.J.; Su, D.; /SLAC

    2007-12-03

    The tracking resolution and vertex finding capabilities of the SLD experiment depended upon a precise knowledge of the location and orientation of the elements of the SLD pixel vertex detector (VXD3) in 3D space. At the heart of the procedure described here to align the 96 CCDs is the matrix inversion technique of singular value decomposition (SVD). This tool was employed to unfold the detector geometry corrections from the track data in the VXD3. The algorithm was adapted to perform an optimal {chi}{sup 2} minimization by careful treatment of the track hit residual measurement errors. The tracking resolution obtained with the aligned geometry achieved the design performance. Comments are given on how this method could be used for other trackers.

  9. Implementation of a Parallel Protein Structure Alignment Service on Cloud

    PubMed Central

    Hung, Che-Lun; Lin, Yaw-Ling

    2013-01-01

    Protein structure alignment has become an important strategy by which to identify evolutionary relationships between protein sequences. Several alignment tools are currently available for online comparison of protein structures. In this paper, we propose a parallel protein structure alignment service based on the Hadoop distribution framework. This service includes a protein structure alignment algorithm, a refinement algorithm, and a MapReduce programming model. The refinement algorithm refines the result of alignment. To process vast numbers of protein structures in parallel, the alignment and refinement algorithms are implemented using MapReduce. We analyzed and compared the structure alignments produced by different methods using a dataset randomly selected from the PDB database. The experimental results verify that the proposed algorithm refines the resulting alignments more accurately than existing algorithms. Meanwhile, the computational performance of the proposed service is proportional to the number of processors used in our cloud platform. PMID:23671842

  10. Implementation of a parallel protein structure alignment service on cloud.

    PubMed

    Hung, Che-Lun; Lin, Yaw-Ling

    2013-01-01

    Protein structure alignment has become an important strategy by which to identify evolutionary relationships between protein sequences. Several alignment tools are currently available for online comparison of protein structures. In this paper, we propose a parallel protein structure alignment service based on the Hadoop distribution framework. This service includes a protein structure alignment algorithm, a refinement algorithm, and a MapReduce programming model. The refinement algorithm refines the result of alignment. To process vast numbers of protein structures in parallel, the alignment and refinement algorithms are implemented using MapReduce. We analyzed and compared the structure alignments produced by different methods using a dataset randomly selected from the PDB database. The experimental results verify that the proposed algorithm refines the resulting alignments more accurately than existing algorithms. Meanwhile, the computational performance of the proposed service is proportional to the number of processors used in our cloud platform. PMID:23671842

  11. 2. DETAIL OF THEODOLITE PYLON NORTH OF AZIMUTH ALIGNMENT SHED ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    2. DETAIL OF THEODOLITE PYLON NORTH OF AZIMUTH ALIGNMENT SHED (BLDG. 775). - Vandenberg Air Force Base, Space Launch Complex 3, Azimuth Alignment Shed, Napa & Alden Roads, Lompoc, Santa Barbara County, CA

  12. Split-alignment of genomes finds orthologies more accurately.

    PubMed

    Frith, Martin C; Kawaguchi, Risa

    2015-01-01

    We present a new pair-wise genome alignment method, based on a simple concept of finding an optimal set of local alignments. It gains accuracy by not masking repeats, and by using a statistical model to quantify the (un)ambiguity of each alignment part. Compared to previous animal genome alignments, it aligns thousands of locations differently and with much higher similarity, strongly suggesting that the previous alignments are non-orthologous. The previous methods suffer from an overly-strong assumption of long un-rearranged blocks. The new alignments should help find interesting and unusual features, such as fast-evolving elements and micro-rearrangements, which are confounded by alignment errors. PMID:25994148

  13. Blasting and Zipping: Sequence Alignment and Mutual Information

    NASA Astrophysics Data System (ADS)

    Penner, Orion; Grassberger, Peter; Paczuski, Maya

    2009-03-01

    Alignment of biological sequences such as DNA, RNA or proteins is one of the most widely used tools in computational bioscience. While the accomplishments of sequence alignment algorithms are undeniable the fact remains that these algorithms are based upon heuristic scoring schemes. Therefore, these algorithms do not provide model independent and objective measures for how similar two (or more) sequences actually are. Although information theory provides such a similarity measure - the mutual information (MI) - numerous previous attempts to connect sequence alignment and information have not produced realistic estimates for the MI from a given alignment. We report on a simple and flexible approach to get robust estimates of MI from global alignments. The presented results may help establish MI as a reliable tool for evaluating the quality of global alignments, judging the relative merits of different alignment algorithms, and estimating the significance of specific alignments.

  14. Alignment Mirror Mechanisms for Space Use

    NASA Technical Reports Server (NTRS)

    Jau, Bruno M.; McKinney, Colin M.; Smythe, Robert F.; Palmer, Dean

    2011-01-01

    The paper describes an optical Alignment Mirror Mechanism (AMM), and discusses its control scheme. The mirror's angular positioning accuracy requirement is +/- 0.2 arc-sec. This requires the mirror's linear positioning actuators to have a positioning accuracy of +/- 109 nm to enable the mirror to meet the angular tip/tilt accuracy requirement. Demonstrated capabilities are +/- 35 nm linear positioning capability at the actuator, which translates into +/- 0.07 arc-sec angular mirror positioning accuracy.

  15. Experience report with the Alignment Diagnostic System

    SciTech Connect

    Gassner, Georg; /SLAC

    2011-03-03

    Since 2009 an Alignment Diagnostic System (ADS) has been operating at the undulator of the new Linac Coherent Light Source at SLAC National Accelerator Laboratory. The undulator spans a distance of 132 meters and is structured into 33 segments. Each segment is equipped with four hydrostatic leveling sensors and four wire position monitors. This report describes the set up and reflects the experience gained with the ADS.

  16. Improved pen alignment for bidirectional printing

    NASA Astrophysics Data System (ADS)

    Bernal, Edgar; Allebach, Jan P.; Pizlo, Zygmunt

    2006-01-01

    The quality of the prints produced by an inkjet printer is highly dependent on the characteristics of the dots produced by the inkjet pens. While some literature discusses metrics for the objective evaluation of print quality, few of the efforts have combined automated quality tests with subjective assessment. We develop an algorithm for analyzing printed dots and study the effects of the dot characteristics on the perceived print alignment. We establish the perceptual preferences of human observers via a set of psychophysical experiments.

  17. Superposition and alignment of labeled point clouds.

    PubMed

    Fober, Thomas; Glinca, Serghei; Klebe, Gerhard; Hüllermeier, Eyke

    2011-01-01

    Geometric objects are often represented approximately in terms of a finite set of points in three-dimensional euclidean space. In this paper, we extend this representation to what we call labeled point clouds. A labeled point cloud is a finite set of points, where each point is not only associated with a position in three-dimensional space, but also with a discrete class label that represents a specific property. This type of model is especially suitable for modeling biomolecules such as proteins and protein binding sites, where a label may represent an atom type or a physico-chemical property. Proceeding from this representation, we address the question of how to compare two labeled points clouds in terms of their similarity. Using fuzzy modeling techniques, we develop a suitable similarity measure as well as an efficient evolutionary algorithm to compute it. Moreover, we consider the problem of establishing an alignment of the structures in the sense of a one-to-one correspondence between their basic constituents. From a biological point of view, alignments of this kind are of great interest, since mutually corresponding molecular constituents offer important information about evolution and heredity, and can also serve as a means to explain a degree of similarity. In this paper, we therefore develop a method for computing pairwise or multiple alignments of labeled point clouds. To this end, we proceed from an optimal superposition of the corresponding point clouds and construct an alignment which is as much as possible in agreement with the neighborhood structure established by this superposition. We apply our methods to the structural analysis of protein binding sites.

  18. Controlled Deposition and Alignment of Carbon Nanotubes

    NASA Technical Reports Server (NTRS)

    Smits, Jan M. (Inventor); Wincheski, Russell A. (Inventor); Patry, JoAnne L. (Inventor); Watkins, Anthony Neal (Inventor); Jordan, Jeffrey D. (Inventor)

    2012-01-01

    A carbon nanotube (CNT) attraction material is deposited on a substrate in the gap region between two electrodes on the substrate. An electric potential is applied to the two electrodes. The CNT attraction material is wetted with a solution defined by a carrier liquid having carbon nanotubes (CNTs) suspended therein. A portion of the CNTs align with the electric field and adhere to the CNT attraction material. The carrier liquid and any CNTs not adhered to the CNT attraction material are then removed.

  19. Controlled Deposition and Alignment of Carbon Nanotubes

    NASA Technical Reports Server (NTRS)

    Smits, Jan M. (Inventor); Wincheski, Russell A. (Inventor); Ingram, JoAnne L. (Inventor); Watkins, Anthony Neal (Inventor); Jordan, Jeffrey D. (Inventor)

    2009-01-01

    A carbon nanotube (CNT) attraction material is deposited on a substrate in the gap region between two electrodes on the . substrate. An electric potential is applied to the two electrodes. The CNT attraction material is wetted with a solution defined by a carver liquid having carbon nanotubes (CNTs) suspended therein. A portion of the CNTs align with the electric field and adhere to The CNT attraction material. The carrier liquid and any CNTs not adhered to the CNT attraction material are then removed.

  20. Mounting and Alignment of IXO Mirror Segments

    NASA Technical Reports Server (NTRS)

    Chan, Kai-Wing; Zhang, William; Evans, Tyler; McClelland, Ryan; Hong, Melinda; Mazzarella, James; Saha, Timo; Jalota, Lalit; Olsen, Lawrence; Byron, Glenn

    2010-01-01

    A suspension-mounting scheme is developed for the IXO (International X-ray Observatory) mirror segments in which the figure of the mirror segment is preserved in each stage of mounting. The mirror, first fixed on a thermally compatible strongback, is subsequently transported, aligned and transferred onto its mirror housing. In this paper, we shall outline the requirement, approaches, and recent progress of the suspension mount processes.

  1. Local versus global biological network alignment

    PubMed Central

    Meng, Lei; Striegel, Aaron; Milenković, Tijana

    2016-01-01

    Motivation: Network alignment (NA) aims to find regions of similarities between species’ molecular networks. There exist two NA categories: local (LNA) and global (GNA). LNA finds small highly conserved network regions and produces a many-to-many node mapping. GNA finds large conserved regions and produces a one-to-one node mapping. Given the different outputs of LNA and GNA, when a new NA method is proposed, it is compared against existing methods from the same category. However, both NA categories have the same goal: to allow for transferring functional knowledge from well- to poorly-studied species between conserved network regions. So, which one to choose, LNA or GNA? To answer this, we introduce the first systematic evaluation of the two NA categories. Results: We introduce new measures of alignment quality that allow for fair comparison of the different LNA and GNA outputs, as such measures do not exist. We provide user-friendly software for efficient alignment evaluation that implements the new and existing measures. We evaluate prominent LNA and GNA methods on synthetic and real-world biological networks. We study the effect on alignment quality of using different interaction types and confidence levels. We find that the superiority of one NA category over the other is context-dependent. Further, when we contrast LNA and GNA in the application of learning novel protein functional knowledge, the two produce very different predictions, indicating their complementarity. Our results and software provide guidelines for future NA method development and evaluation. Availability and implementation: Software: http://www.nd.edu/~cone/LNA_GNA Contact: tmilenko@nd.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:27357169

  2. Vertical bounce of two vertically aligned balls

    NASA Astrophysics Data System (ADS)

    Cross, Rod

    2007-11-01

    When a tennis ball rests on top of a basketball and both drop to the floor together, the tennis ball is projected vertically at high speed. A mass-spring model of the impact, as well as air track data, suggest that the tennis ball should be projected at relatively low speed. Measurements of the forces on each ball and the bounce of vertically aligned superballs are used to resolve the discrepancy.

  3. Ion Implantation with Scanning Probe Alignment

    SciTech Connect

    Persaud, A.; Liddle, J.A.; Schenkel, T.; Bokor, J.; Ivanov, Tzv.; Rangelow, I.W.

    2005-07-12

    We describe a scanning probe instrument which integrates ion beams with the imaging and alignment function of a piezo-resistive scanning probe in high vacuum. The beam passes through several apertures and is finally collimated by a hole in the cantilever of the scanning probe. The ion beam spot size is limited by the size of the last aperture. Highly charged ions are used to show hits of single ions in resist, and we discuss the issues for implantation of single ions.

  4. Fast and sensitive protein alignment using DIAMOND.

    PubMed

    Buchfink, Benjamin; Xie, Chao; Huson, Daniel H

    2015-01-01

    The alignment of sequencing reads against a protein reference database is a major computational bottleneck in metagenomics and data-intensive evolutionary projects. Although recent tools offer improved performance over the gold standard BLASTX, they exhibit only a modest speedup or low sensitivity. We introduce DIAMOND, an open-source algorithm based on double indexing that is 20,000 times faster than BLASTX on short reads and has a similar degree of sensitivity.

  5. Mask-to-wafer alignment system

    DOEpatents

    Sweatt, William C.; Tichenor, Daniel A.; Haney, Steven J.

    2003-11-04

    A modified beam splitter that has a hole pattern that is symmetric in one axis and anti-symmetric in the other can be employed in a mask-to-wafer alignment device. The device is particularly suited for rough alignment using visible light. The modified beam splitter transmits and reflects light from a source of electromagnetic radiation and it includes a substrate that has a first surface facing the source of electromagnetic radiation and second surface that is reflective of said electromagnetic radiation. The substrate defines a hole pattern about a central line of the substrate. In operation, an input beam from a camera is directed toward the modified beam splitter and the light from the camera that passes through the holes illuminates the reticle on the wafer. The light beam from the camera also projects an image of a corresponding reticle pattern that is formed on the mask surface of the that is positioned downstream from the camera. Alignment can be accomplished by detecting the radiation that is reflected from the second surface of the modified beam splitter since the reflected radiation contains both the image of the pattern from the mask and a corresponding pattern on the wafer.

  6. On the absolute alignment of GONG images

    NASA Astrophysics Data System (ADS)

    Toner, C. G.

    2001-01-01

    In order to combine data from the six instruments in the GONG network the alignment of all of the images must be known to a fairly high precision (~0°.1 for GONG Classic and ~0°.01 for GONG+). The relative orientation is obtained using the angular cross-correlation method described by (Toner & Harvey, 1998). To obtain the absolute orientation the Project periodically records a day of drift scans, where the image of the Sun is allowed to drift across the CCD repeatedly throughout the day. These data are then analyzed to deduce the direction of Terrestrial East-West as a function of hour angle (i.e., time) for that instrument. The transit of Mercury on Nov. 15, 1999, which was recorded by three of the GONG instruments, provided an independent check on the current alignment procedures. Here we present a comparison of the alignment of GONG images as deduced from both drift scans and the Mercury transit for two GONG sites: Tucson (GONG+ camera) and Mauna Loa (GONG Classic camera). The agreement is within ~0°.01 for both cameras, however, the scatter is substantially larger for GONG Classic: ~0°.03 compared to ~0°.01 for GONG+.

  7. Partial face recognition: alignment-free approach.

    PubMed

    Liao, Shengcai; Jain, Anil K; Li, Stan Z

    2013-05-01

    Numerous methods have been developed for holistic face recognition with impressive performance. However, few studies have tackled how to recognize an arbitrary patch of a face image. Partial faces frequently appear in unconstrained scenarios, with images captured by surveillance cameras or handheld devices (e.g., mobile phones) in particular. In this paper, we propose a general partial face recognition approach that does not require face alignment by eye coordinates or any other fiducial points. We develop an alignment-free face representation method based on Multi-Keypoint Descriptors (MKD), where the descriptor size of a face is determined by the actual content of the image. In this way, any probe face image, holistic or partial, can be sparsely represented by a large dictionary of gallery descriptors. A new keypoint descriptor called Gabor Ternary Pattern (GTP) is also developed for robust and discriminative face recognition. Experimental results are reported on four public domain face databases (FRGCv2.0, AR, LFW, and PubFig) under both the open-set identification and verification scenarios. Comparisons with two leading commercial face recognition SDKs (PittPatt and FaceVACS) and two baseline algorithms (PCA+LDA and LBP) show that the proposed method, overall, is superior in recognizing both holistic and partial faces without requiring alignment.

  8. Energy-level alignment at organic heterointerfaces

    PubMed Central

    Oehzelt, Martin; Akaike, Kouki; Koch, Norbert; Heimel, Georg

    2015-01-01

    Today’s champion organic (opto-)electronic devices comprise an ever-increasing number of different organic-semiconductor layers. The functionality of these complex heterostructures largely derives from the relative alignment of the frontier molecular-orbital energies in each layer with respect to those in all others. Despite the technological relevance of the energy-level alignment at organic heterointerfaces, and despite continued scientific interest, a reliable model that can quantitatively predict the full range of phenomena observed at such interfaces is notably absent. We identify the limitations of previous attempts to formulate such a model and highlight inconsistencies in the interpretation of the experimental data they were based on. We then develop a theoretical framework, which we demonstrate to accurately reproduce experiment. Applying this theory, a comprehensive overview of all possible energy-level alignment scenarios that can be encountered at organic heterojunctions is finally given. These results will help focus future efforts on developing functional organic interfaces for superior device performance. PMID:26702447

  9. Alignement automatise de fibres optiques amorces monomodes

    NASA Astrophysics Data System (ADS)

    St-Amant, Yves

    Cette these jette les bases necessaires au developpement d'algorithmes a base de modele pour l'automatisation de l'alignement de fibres amorces monomodes. A partir de la methode de l'integrale de recouvrement et de deux solutions approximatives existantes, un modele analytique d'efficacite de couplage optique permettant d'estimer la puissance transmise entre un composant et une fibre amorce monomode est d'abord formule. Avec celui-ci, sept proprietes pouvant etre utiles au developpement d'algorithmes a base de modele sont ensuite identifiees et validees. Enfin, a l'aide de ces proprietes, une strategie d'alignement a base de modele est developpee et validee experimentalement. Les resultats obtenus demontrent clairement la repetitivite, la robustesse, la precision et la rapidite de la strategie proposee. Ils demontrent aussi qu'il est possible de realiser un alignement complet sans l'utilisation de systemes auxiliaires tels des systemes de vision, des cameras infrarouges, des capteurs de contact ou des systemes de fixation hautement precis.

  10. Shear adhesion strength of aligned electrospun nanofibers.

    PubMed

    Najem, Johnny F; Wong, Shing-Chung; Ji, Guang

    2014-09-01

    Inspiration from nature such as insects' foot hairs motivates scientists to fabricate nanoscale cylindrical solids that allow tens of millions of contact points per unit area with material substrates. In this paper, we present a simple yet robust method for fabricating directionally sensitive shear adhesive laminates. By using aligned electrospun nylon-6, we create dry adhesives, as a succession of our previous work on measuring adhesion energies between two single free-standing electrospun polymer fibers in cross-cylinder geometry, randomly oriented membranes and substrate, and peel forces between aligned fibers and substrate. The synthetic aligned cylindrical solids in this study are electrically insulating and show a maximal Mode II shear adhesion strength of 27 N/cm(2) on a glass slide. This measured value, for the purpose of comparison, is 270% of that reported from gecko feet. The Mode II shear adhesion strength, based on a commonly known "dead-weight" test, is 97-fold greater than the Mode I (normal) adhesion strength of the same. The data indicate a strong shear binding on and easy normal lifting off. Anisotropic adhesion (Mode II/Mode I) is pronounced. The size and surface boundary effects, crystallinity, and bending stiffness of fibers are used to understand these electrospun nanofibers, which vastly differ from otherwise known adhesive technologies. The anisotropic strength distribution is attributed to a decreasing fiber diameter and an optimized laminate thickness, which, in turn, influences the bending stiffness and solid-state "wettability" of points of contact between nanofibers and surface asperities.

  11. Alignment limit of the NMSSM Higgs sector

    DOE PAGES

    Carena, Marcela; Haber, Howard E.; Low, Ian; Shah, Nausheen R.; Wagner, Carlos E. M.

    2016-02-17

    The Next-to-Minimal Supersymmetric extension of the Standard Model (NMSSM) with a Higgs boson of mass 125 GeV can be compatible with stop masses of order of the electroweak scale, thereby reducing the degree of fine-tuning necessary to achieve electroweak symmetry breaking. Moreover, in an attractive region of the NMSSM parameter space, corresponding to the \\alignment limit" in which one of the neutral Higgs fields lies approximately in the same direction in field space as the doublet Higgs vacuum expectation value, the observed Higgs boson is predicted to have Standard- Model-like properties. We derive analytical expressions for the alignment conditions andmore » show that they point toward a more natural region of parameter space for electroweak symmetry breaking, while allowing for perturbativity of the theory up to the Planck scale. Additionally, the alignment limit in the NMSSM leads to a well defined spectrum in the Higgs and Higgsino sectors, and yields a rich and interesting Higgs boson phenomenology that can be tested at the LHC. Here, we discuss the most promising channels for discovery and present several benchmark points for further study.« less

  12. Efficient visual grasping alignment for cylinders

    NASA Technical Reports Server (NTRS)

    Nicewarner, Keith E.; Kelley, Robert B.

    1991-01-01

    Monocular information from a gripper-mounted camera is used to servo the robot gripper to grasp a cylinder. The fundamental concept for rapid pose estimation is to reduce the amount of information that needs to be processed during each vision update interval. The grasping procedure is divided into four phases: learn, recognition, alignment, and approach. In the learn phase, a cylinder is placed in the gripper and the pose estimate is stored and later used as the servo target. This is performed once as a calibration step. The recognition phase verifies the presence of a cylinder in the camera field of view. An initial pose estimate is computed and uncluttered scan regions are selected. The radius of the cylinder is estimated by moving the robot a fixed distance toward the cylinder and observing the change in the image. The alignment phase processes only the scan regions obtained previously. Rapid pose estimates are used to align the robot with the cylinder at a fixed distance from it. The relative motion of the cylinder is used to generate an extrapolated pose-based trajectory for the robot controller. The approach phase guides the robot gripper to a grasping position. The cylinder can be grasped with a minimal reaction force and torque when only rough global pose information is initially available.

  13. Short read alignment with populations of genomes

    PubMed Central

    Huang, Lin; Popic, Victoria; Batzoglou, Serafim

    2013-01-01

    Summary: The increasing availability of high-throughput sequencing technologies has led to thousands of human genomes having been sequenced in the past years. Efforts such as the 1000 Genomes Project further add to the availability of human genome variation data. However, to date, there is no method that can map reads of a newly sequenced human genome to a large collection of genomes. Instead, methods rely on aligning reads to a single reference genome. This leads to inherent biases and lower accuracy. To tackle this problem, a new alignment tool BWBBLE is introduced in this article. We (i) introduce a new compressed representation of a collection of genomes, which explicitly tackles the genomic variation observed at every position, and (ii) design a new alignment algorithm based on the Burrows–Wheeler transform that maps short reads from a newly sequenced genome to an arbitrary collection of two or more (up to millions of) genomes with high accuracy and no inherent bias to one specific genome. Availability: http://viq854.github.com/bwbble. Contact: serafim@cs.stanford.edu PMID:23813006

  14. Polymeric templating and alignment of fullerenes

    NASA Astrophysics Data System (ADS)

    Kincer, Matthew Ryan

    Fullerene research has advanced to elevated levels in a short period of time due to the unique chemical and physical properties of the caged molecule that have been utilized in numerous applications. Due to the spherical shape of the fullerene molecule which allows for a hollow cavity, encapsulation of atoms or small molecules can occur within the ball structure. This encapsulation creates an endohedral component that is limited from interacting with other molecules which creates potential of control over electronic information of the isolated molecule. Endohedral fullerenes have the potential as serving as the base unit in a quantum computer if control over global alignment is attained. Thus, by using the inherent self-assembling capabilities of some organic materials, ordered endohedral fullerenes can be achieved. This dissertation investigates the ability to use self-assembling strategies to obtain alignment which include ordering within a morphologically controlled copolymer matrix, forming a supramolecular polymer complex with cyclodextrin, and encapsulation within the helical wrap of polymer chains. The ultimate goal is to understand the dynamics that control association and orientation of varying fullerene-based molecules in each strategy in order to maximize control over the final alignment of endohedral elements.

  15. The Sardinia Radio Telescope (SRT) optical alignment

    NASA Astrophysics Data System (ADS)

    Süss, Martin; Koch, Dietmar; Paluszek, Heiko

    2012-09-01

    The Sardinia Radio Telescope (SRT) is the largest radio telescope recently built in Europe - a 64m Radio Telescope designed to operate in a wavelength regime down to 1mm. The SRT is designed in a classical Gregorian configuration, allowing access to the primary mirror focus (F1), the Gregorian focus (F2) as well as a further translation to different F3 using a beam waveguide system and an automated change between different F3 receiver positions. The primary mirror M1, 64m in diameter, is composed by 1008 individual panels. The surface can be actively controlled. It’s surface, as well as the one of the 8 m Gregorian subreflector, needed to be adjusted after panel mounting at the Sardinia site. The measurement technique used is photogrammetry. In case of the large scale M1 a dedicated combination of a large scale and a small scale approach was developed to achieve extremely high accuracy on the large scale dimension. The measurement/ alignment efforts were carried out in 2010 and 2011, with a final completion in spring 2012. The results obtained are presented and discussed. The overall alignment approach also included the absolute adjustments of M2 to M1 and the alignments of M3, M4 and M5. M3 is a rotating mirror guiding the RF beam to M4 or M5, depending on the operational scenario. These adjustments are based on Lasertracker measurements and have been carried out in an integrated approach.

  16. Functionalization of vertically aligned carbon nanotubes

    PubMed Central

    Snyders, Rony; Colomer, Jean-François

    2013-01-01

    Summary This review focuses and summarizes recent studies on the functionalization of carbon nanotubes oriented perpendicularly to their substrate, so-called vertically aligned carbon nanotubes (VA-CNTs). The intrinsic properties of individual nanotubes make the VA-CNTs ideal candidates for integration in a wide range of devices, and many potential applications have been envisaged. These applications can benefit from the unidirectional alignment of the nanotubes, the large surface area, the high carbon purity, the outstanding electrical conductivity, and the uniformly long length. However, practical uses of VA-CNTs are limited by their surface characteristics, which must be often modified in order to meet the specificity of each particular application. The proposed approaches are based on the chemical modifications of the surface by functionalization (grafting of functional chemical groups, decoration with metal particles or wrapping of polymers) to bring new properties or to improve the interactions between the VA-CNTs and their environment while maintaining the alignment of CNTs. PMID:23504581

  17. Aligning genomes with inversions and swaps

    SciTech Connect

    Holloway, J.L.; Cull, P.

    1994-12-31

    The decision about what operators to allow and how to charge for these operations when aligning strings that arise in a biological context is the decision about what model of evolution to assume. Frequently the operators used to construct an alignment between biological sequences axe limited to deletion, insertion, or replacement of a character or block of characters, but there is biological evidence for the evolutionary operations of exchanging the positions of two segments in a sequence and the replacement of a segment by its reversed complement. In this paper we describe a family of heuristics designed to compute alignments of biological sequences assuming a model of evolution with swaps and inversions. The heuristics will necessarily be approximate since the appropriate way to charge for the evolutionary events (delete, insert, substitute, swap, and invert) is not known. The paper concludes with a pair-wise comparison of 20 Picornavirus genomes, and a detailed comparison of the hepatitis delta virus with the citrus exocortis viroid.

  18. IVUS coronary volume alignment for distinct phases

    NASA Astrophysics Data System (ADS)

    Matsumoto, Monica Mitiko Soares; Lemos, Pedro Alves; Furuie, Sergio Shiguemi

    2009-02-01

    Image-based intravascular ultrasound (IVUS) cardiac phase detection allows coronary volume reconstruction in different phases. Consecutive volumes are not necessarily spatially aligned due to longitudinal movement of the catheter. Besides ordinary pullback velocity, there is a relative longitudinal movement of the heart vessel walls and the transducer, due to myocardial contraction. In this manuscript, we aim to spatially align cardiac phase coronary IVUS volumes. In addition, we want to investigate this non-linear longitudinal catheter movement. With this purpose, we have analyzed 120 simulated IVUS images and 10 real IVUS pullbacks. We implemented the following methodology. Firstly, we built IVUS volume for each distinct phase. Secondly, each IVUS volume was transformed into a parametric signal of average frame intensity. We have used these signals to make correlation in space with a reference one. Then we estimated the spatial distance between the distinct IVUS volumes and the reference. We have tested in simulated images and real examinations. We have also observed similar pattern in real IVUS examinations. This spatial alignment method is feasible and useful as a step towards dynamic studies of IVUS examination.

  19. Is speech alignment to talkers or tasks?

    PubMed Central

    Miller, Rachel M.; Sanchez, Kauyumari; Rosenblum, Lawrence D.

    2013-01-01

    Speech alignment, the tendency of individuals to subtly imitate each other’s speaking style, is often assessed by comparing a subject’s baseline and shadowed utterances to a model’s utterances often through perceptual ratings. These types of comparisons provide information about the occurrence of a change in subject’s speech, but do not indicate that this change is towards the specific shadowed model. Three studies investigated whether alignment is specific to a shadowed model. Experiment 1 involved the classic baseline to shadowed comparison to confirm that subjects did, in fact, sound more like their model when they shadowed, relative to any pre-existing similarities between a subject and model. Experiment 2 tested whether subjects’ utterances sounded more similar to the model they had shadowed or to another unshadowed model. Experiment 3 examined whether subjects’ utterances sounded more similar to the model they had shadowed or to another subject who shadowed a different model. Results of all experiments revealed that subjects sounded more similar to the model they had shadowed. This suggests that shadowing-based speech alignment is not just a change; it is a change in the direction of the shadowed model, specifically. PMID:23907619

  20. Partial face recognition: alignment-free approach.

    PubMed

    Liao, Shengcai; Jain, Anil K; Li, Stan Z

    2013-05-01

    Numerous methods have been developed for holistic face recognition with impressive performance. However, few studies have tackled how to recognize an arbitrary patch of a face image. Partial faces frequently appear in unconstrained scenarios, with images captured by surveillance cameras or handheld devices (e.g., mobile phones) in particular. In this paper, we propose a general partial face recognition approach that does not require face alignment by eye coordinates or any other fiducial points. We develop an alignment-free face representation method based on Multi-Keypoint Descriptors (MKD), where the descriptor size of a face is determined by the actual content of the image. In this way, any probe face image, holistic or partial, can be sparsely represented by a large dictionary of gallery descriptors. A new keypoint descriptor called Gabor Ternary Pattern (GTP) is also developed for robust and discriminative face recognition. Experimental results are reported on four public domain face databases (FRGCv2.0, AR, LFW, and PubFig) under both the open-set identification and verification scenarios. Comparisons with two leading commercial face recognition SDKs (PittPatt and FaceVACS) and two baseline algorithms (PCA+LDA and LBP) show that the proposed method, overall, is superior in recognizing both holistic and partial faces without requiring alignment. PMID:23520259

  1. Alignment displacements of the solar optical telescope primary mirror

    NASA Technical Reports Server (NTRS)

    Medenica, W. V.

    1978-01-01

    Solar optical telescope is a space shuttle payload which is at the present time (1978) being planned. The selected alignment method for the telescope's primary mirror is such that the six inclined legs supporting the mirror are at the same time motorized alignment actuators, changing their own length according to the alignment requirement and command. The alignment displacements were described, including circumvention of some apparent NASTRAN limitations.

  2. Some Alignment Considerations for the Next Linear Collider

    SciTech Connect

    Ruland, R

    2004-06-08

    Next Linear Collider type accelerators require a new level of alignment quality. The relative alignment of these machines is to be maintained in an error envelope dimensioned in micrometers and for certain parts in nanometers. In the nanometer domain our terra firma cannot be considered monolithic but compares closer to jelly. Since conventional optical alignment methods cannot deal with the dynamics and cannot approach the level of accuracy, special alignment and monitoring techniques must be pursued.

  3. Sensitive Technique For Detecting Alignment Of Seed Laser

    NASA Technical Reports Server (NTRS)

    Barnes, Norman P.

    1994-01-01

    Frequency response near resonance measured. Improved technique for detection and quantification of alignment of injection-seeding laser with associated power-oscillator laser proposed. Particularly useful in indicating alignment at spectral purity greater than 98 percent because it becomes more sensitive as perfect alignment approached. In addition, implemented relatively easily, without turning on power-oscillator laser.

  4. Hospital-physician alignment: making the relationship work.

    PubMed

    Lovrien, Kate; Peterson, Luke

    2011-12-01

    CFOs can take four steps to help their organizations align successfully and cost-effectively with physicians: Understand the type of alignment required for the organization. Determine the right strategies for strengthening the organization's alignment gaps. Execute successfully. Monitor consistently and systematically.

  5. Refining Methods for Estimating Critical Values for an Alignment Index

    ERIC Educational Resources Information Center

    Polikoff, Morgan S.; Fulmer, Gavin W.

    2013-01-01

    The alignment among standards, assessments, and teachers' instruction is an essential element of standards-based educational reforms. The Surveys of Enacted Curriculum (SEC) is the only common tool that can be used to measure the alignment among all three of these sources (Martone & Sireci, 2009). Prior SEC alignment work has been limited…

  6. 33 CFR 101.205 - Department of Homeland Security alignment.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Department of Homeland Security alignment. 101.205 Section 101.205 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND... Department of Homeland Security alignment. The MARSEC Levels are aligned with the Department of...

  7. 33 CFR 101.205 - Department of Homeland Security alignment.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Department of Homeland Security alignment. 101.205 Section 101.205 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND... Department of Homeland Security alignment. The MARSEC Levels are aligned with the Department of...

  8. 33 CFR 101.205 - Department of Homeland Security alignment.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Department of Homeland Security alignment. 101.205 Section 101.205 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND... Department of Homeland Security alignment. The MARSEC Levels are aligned with the Department of...

  9. Mirror device aligns machine surface perpendicular to sight lines

    NASA Technical Reports Server (NTRS)

    Kissler, H. R.

    1964-01-01

    A sight alignment device is used to align two machines so that an axis of the first machine is parallel to a flat surface on the second. This sighting device depends on the reflection of a light beam from the surface to be aligned.

  10. Technology of alignment mark in electron beam lithography

    NASA Astrophysics Data System (ADS)

    Zhao, Min; Xu, Tang; Chen, Baoqin; Niu, Jiebin

    2014-08-01

    Electron beam direct wring lithography has been an indispensable approach by which all sorts of novel nano-scale devices include many kinds optical devices can be fabricated. Alignment accuracy is a key factor especially to those devices which need multi-level lithography. In addition to electron beam lithography system itself the quality of alignment mark directly influences alignment accuracy. This paper introduces fundamental of alignment mark detection and discusses some techniques of alignment mark fabrication along with considerations for obtaining highly accurate alignment taking JBX5000LS and JBX6300FS e-beam lithography systems for example. The fundamental of alignment mark detection is expounded first. Many kinds of factors which can impact on the quality of alignment mark are analyzed including mark materials, depth of mark groove and influence of multi-channel process. It has been proved from experiments that material used as metal mark with higher average atomic number is better beneficial for getting high alignment accuracy. Depth of mark groove is required to 1.5~5 μm on our experience. The more process steps alignment mark must pass through, the more probability of being damaged there will be. So the compatibility of alignment mark fabrication with the whole device process and the protection of alignment mark are both need to be considered in advance.

  11. Qualitative Variation in Constructive Alignment in Curriculum Design

    ERIC Educational Resources Information Center

    Trigwell, Keith; Prosser, Michael

    2014-01-01

    Constructive alignment has emerged as a powerful curriculum design idea, but little is known of the extent to which the effectiveness of this idea is a function of qualitative variation. This article introduces a model of qualitative variation in constructive alignment, and uses the results from known alignment studies to test the model. The…

  12. Grain alignment by radiative torques in special conditions and implications

    NASA Astrophysics Data System (ADS)

    Hoang, Thiem; Lazarian, A.

    2014-02-01

    Grain alignment by radiative torques (RATs) has been extensively studied for various environment conditions, including interstellar medium, dense molecular clouds and accretion discs, thanks to significant progress in observational, theoretical and numerical studies. In this paper, we explore the alignment by RATs and provide quantitative predictions of dust polarization for a set of astrophysical environments that can be tested observationally. We first consider the alignment of grains in the local interstellar medium and compare predictions for linear polarization by aligned grains with recent observational data for nearby stars. We then revisit the problem of grain alignment in accretions discs by taking into account the dependence of RAT alignment efficiency on the anisotropic direction of radiation fields relative to magnetic fields. Moreover, we study the grain alignment in interplanetary medium, including diffuse Zodiacal cloud and cometary comae, and calculate the degree of circular polarization (CP) of scattered light arising from single scattering by aligned grains. We also discuss a new type of grain alignment, namely the alignment with respect to the ambient electric field instead of the alignment with the magnetic field. We show that this type of alignment can allow us to reproduce the systematic features of CP observed across a cometary coma. Our findings suggest that polarized Zodiacal dust emission may be an important polarized foreground component, which should be treated carefully in cosmic microwave background experiments.

  13. AlignNemo: A Local Network Alignment Method to Integrate Homology and Topology

    PubMed Central

    Guzzi, Pietro H.; Cannataro, Mario; Guerra, Concettina

    2012-01-01

    Local network alignment is an important component of the analysis of protein-protein interaction networks that may lead to the identification of evolutionary related complexes. We present AlignNemo, a new algorithm that, given the networks of two organisms, uncovers subnetworks of proteins that relate in biological function and topology of interactions. The discovered conserved subnetworks have a general topology and need not to correspond to specific interaction patterns, so that they more closely fit the models of functional complexes proposed in the literature. The algorithm is able to handle sparse interaction data with an expansion process that at each step explores the local topology of the networks beyond the proteins directly interacting with the current solution. To assess the performance of AlignNemo, we ran a series of benchmarks using statistical measures as well as biological knowledge. Based on reference datasets of protein complexes, AlignNemo shows better performance than other methods in terms of both precision and recall. We show our solutions to be biologically sound using the concept of semantic similarity applied to Gene Ontology vocabularies. The binaries of AlignNemo and supplementary details about the algorithms and the experiments are available at: sourceforge.net/p/alignnemo. PMID:22719866

  14. Uncertainty in homology inferences: Assessing and improving genomic sequence alignment

    PubMed Central

    Lunter, Gerton; Rocco, Andrea; Mimouni, Naila; Heger, Andreas; Caldeira, Alexandre; Hein, Jotun

    2008-01-01

    Sequence alignment underpins all of comparative genomics, yet it remains an incompletely solved problem. In particular, the statistical uncertainty within inferred alignments is often disregarded, while parametric or phylogenetic inferences are considered meaningless without confidence estimates. Here, we report on a theoretical and simulation study of pairwise alignments of genomic DNA at human–mouse divergence. We find that >15% of aligned bases are incorrect in existing whole-genome alignments, and we identify three types of alignment error, each leading to systematic biases in all algorithms considered. Careful modeling of the evolutionary process improves alignment quality; however, these improvements are modest compared with the remaining alignment errors, even with exact knowledge of the evolutionary model, emphasizing the need for statistical approaches to account for uncertainty. We develop a new algorithm, Marginalized Posterior Decoding (MPD), which explicitly accounts for uncertainties, is less biased and more accurate than other algorithms we consider, and reduces the proportion of misaligned bases by a third compared with the best existing algorithm. To our knowledge, this is the first nonheuristic algorithm for DNA sequence alignment to show robust improvements over the classic Needleman–Wunsch algorithm. Despite this, considerable uncertainty remains even in the improved alignments. We conclude that a probabilistic treatment is essential, both to improve alignment quality and to quantify the remaining uncertainty. This is becoming increasingly relevant with the growing appreciation of the importance of noncoding DNA, whose study relies heavily on alignments. Alignment errors are inevitable, and should be considered when drawing conclusions from alignments. Software and alignments to assist researchers in doing this are provided at http://genserv.anat.ox.ac.uk/grape/. PMID:18073381

  15. Aligning an Early Childhood Assessment to State Kindergarten Content Standards: Application of a Nationally Recognized Alignment Framework

    ERIC Educational Resources Information Center

    Roach, Andrew T.; McGrath, Dawn; Wixson, Corinne; Talapatra, Devadrita

    2010-01-01

    This article describes an alignment study conducted to evaluate the alignment between Indiana's Kindergarten content standards and items on the Indiana Standards Tool for Alternate Reporting. Alignment is the extent to which standards and assessments are in agreement, working together to guide educators' efforts to support children's learning and…

  16. HubAlign: an accurate and efficient method for global alignment of protein–protein interaction networks

    PubMed Central

    Hashemifar, Somaye; Xu, Jinbo

    2014-01-01

    Motivation: High-throughput experimental techniques have produced a large amount of protein–protein interaction (PPI) data. The study of PPI networks, such as comparative analysis, shall benefit the understanding of life process and diseases at the molecular level. One way of comparative analysis is to align PPI networks to identify conserved or species-specific subnetwork motifs. A few methods have been developed for global PPI network alignment, but it still remains challenging in terms of both accuracy and efficiency. Results: This paper presents a novel global network alignment algorithm, denoted as HubAlign, that makes use of both network topology and sequence homology information, based upon the observation that topologically important proteins in a PPI network usually are much more conserved and thus, more likely to be aligned. HubAlign uses a minimum-degree heuristic algorithm to estimate the topological and functional importance of a protein from the global network topology information. Then HubAlign aligns topologically important proteins first and gradually extends the alignment to the whole network. Extensive tests indicate that HubAlign greatly outperforms several popular methods in terms of both accuracy and efficiency, especially in detecting functionally similar proteins. Availability: HubAlign is available freely for non-commercial purposes at http://ttic.uchicago.edu/∼hashemifar/software/HubAlign.zip Contact: jinboxu@gmail.com Supplementary information: Supplementary data are available at Bioinformatics online. PMID:25161231

  17. Alignment and focus of mirrored facets of a heliosat

    DOEpatents

    Yellowhair, Julius E; Ho, Clifford Kuofei; Diver, Richard B; Moss, Timothy A

    2013-11-12

    Various technologies pertaining to aligning and focusing mirrored facets of a heliostat are described herein. Updating alignment and/or focus of mirrored facets is undertaken through generation of a theoretical image, wherein the theoretical image is indicative of a reflection of the target via the mirrored facets when the mirrored facets are properly aligned. This theoretical image includes reference points that are overlaid on an image of the target as reflected by the mirrored facets of the heliostat. A technician adjusts alignment/focus of a mirrored facet by causing reflected reference markings to become aligned with the reference points in the theoretical image.

  18. Business-IT Alignment in Trade Facilitation: A Case Study

    NASA Astrophysics Data System (ADS)

    Adaba, Godfried; Rusu, Lazar; El-Mekawy, Mohamed

    In the information age, no organization can thrive without harnessing the power of IT. The effective deployment of IT to achieve business goals and gain competitive advantage requires the alignment of business and IT strategies of organizations. Using the Strategic Alignment Maturity model, this paper evaluates strategic alignment maturity of Customs Excise Preventive service, a frontline public organization charged with trade facilitation in Ghana. Strategic alignment maturity is at level 3; which implies the existence of an established process to leverage IT for efficiency and effectiveness. Efforts are required to strengthen alignment and fully harness the potential of IT to facilitate trade in Ghana.

  19. PROMALS web server for accurate multiple protein sequence alignments.

    PubMed

    Pei, Jimin; Kim, Bong-Hyun; Tang, Ming; Grishin, Nick V

    2007-07-01

    Multiple sequence alignments are essential in homology inference, structure modeling, functional prediction and phylogenetic analysis. We developed a web server that constructs multiple protein sequence alignments using PROMALS, a progressive method that improves alignment quality by using additional homologs from PSI-BLAST searches and secondary structure predictions from PSIPRED. PROMALS shows higher alignment accuracy than other advanced methods, such as MUMMALS, ProbCons, MAFFT and SPEM. The PROMALS web server takes FASTA format protein sequences as input. The output includes a colored alignment augmented with information about sequence grouping, predicted secondary structures and positional conservation. The PROMALS web server is available at: http://prodata.swmed.edu/promals/ PMID:17452345

  20. A novel approach for preparation of aligned electrospun polyacrylonitrile nanofibers

    NASA Astrophysics Data System (ADS)

    Heidari, Iman; Mosavi Mashhadi, Mahmoud; Faraji, Ghader

    2013-12-01

    In this Letter, a new type of collector named ‘rotating grid collector’ was introduced and its capability in aligning the nanofibers was examined. The results showed that electrospinning using rotating grid collector could produce well aligned fibers with fiber alignment percent of 76%. It was found that in a constant solution flow rate increasing collector rotation speed and eccentric distance improved the fiber alignments. Having prepared the fiber textiles, we found that increasing the rotation speed improved the tensile strength of the fiber textile. This new collector is promising for future application in aligning nanofibers.