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Sample records for allan downie anne

  1. Downy mildews

    USDA-ARS?s Scientific Manuscript database

    Downy mildew of chickpea and lentil is caused by species of Peronospora. The disease occurs in many parts of the world. All aerial parts of plants are susceptible. Main symptoms include white mycelial patches on the lower leaf surface, and chlorotic to yellow spots develop on the upper surface. Per...

  2. Do downy woodpeckers migrate?

    USGS Publications Warehouse

    Browning, M.R.

    1995-01-01

    Seasonal movement and migration of Downy Woodpeckers (Picoides pubescens) are indicated in several sources in the literature. Analyses of 3784 recoveries of banded birds, with other data, indicate that the species is resident, and that movements of a few individuals may indicate dispersal.

  3. The quantum Allan variance

    NASA Astrophysics Data System (ADS)

    Chabuda, Krzysztof; Leroux, Ian D.; Demkowicz-Dobrzański, Rafał

    2016-08-01

    The instability of an atomic clock is characterized by the Allan variance, a measure widely used to describe the noise of frequency standards. We provide an explicit method to find the ultimate bound on the Allan variance of an atomic clock in the most general scenario where N atoms are prepared in an arbitrarily entangled state and arbitrary measurement and feedback are allowed, including those exploiting coherences between succeeding interrogation steps. While the method is rigorous and general, it becomes numerically challenging for large N and long averaging times.

  4. Spectral Ambiguity of Allan Variance

    NASA Technical Reports Server (NTRS)

    Greenhall, C. A.

    1996-01-01

    We study the extent to which knowledge of Allan variance and other finite-difference variances determines the spectrum of a random process. The variance of first differences is known to determine the spectrum. We show that, in general, the Allan variance does not. A complete description of the ambiguity is given.

  5. Grapevine downy mildew control in organic farming.

    PubMed

    La Torre, A; Spera, G; Lolletti, D

    2005-01-01

    Cupric products at low dose and alternative compounds have been tested to control the downy mildew in an organic vineyard. It has found that copper compounds control downy mildew in a satisfactory way, reducing, at the same time, the dose of copper metal. The alternative products were not satisfactory to control Plasmopara viticola.

  6. Ann Stewart.

    PubMed

    1991-04-24

    Ann Stewart, English National Board Professional Adviser in Midwifery F.ducation and Supervision, who had been a practising midwife since 1954 and served as vice-president of the Royal College of Midwives, died last week.

  7. Allan Cox 1926”1987

    NASA Astrophysics Data System (ADS)

    Coe, Rob; Dalrymple, Brent

    More than 1000 friends, students, and colleagues from all over the country filled Stanford Memorial Chapel (Stanford, Calif.) on February 3, 1987, to join in “A Celebration of the Life of Allan Cox.” Allan died early on the morning of January 27 while bicycling, the sport he had come to love the most. Between pieces of his favorite music by Bach and Mozart, Stanford administrators and colleagues spoke in tribute of Allan's unique qualities as friend, scientist, teacher, and dean of the School of Earth Sciences. James Rosse, Vice President and Provost of Stanford University, struck a particularly resonant chord with his personal remarks: "Allan reached out to each person he knew with the warmth and attention that can only come from deep respect and affection for others. I never heard him speak ill of others, and I do not believe he was capable of doing anything that would harm another being. He cared too much to intrude where he was not wanted, but his curiosity about people and the loving care with which he approached them broke down reserve to create remarkable friendships. His enthusiasm and good humor made him a welcome guest in the hearts of the hundreds of students and colleagues who shared the opportunity of knowing Allan Cox as a person."

  8. Treating downy brome with herbicide and seeding with native shrubs

    Treesearch

    Suzanne Owen; Carolyn Sieg

    2011-01-01

    Downy brome or cheatgrass (Bromus tectorum L.) is one of the most invasive and widespread exotic plants in North America. Downy brome can reduce soil nutrient availability, alter native plant community composition, and increase fire frequencies. The effectiveness of Plateau® imazapic herbicide in reducing downy brome cover has been variable, and there is uncertainty...

  9. Spinach downy mildew – Threat, prevention and control

    USDA-ARS?s Scientific Manuscript database

    Downy mildew disease is a widespread and destructive disease of spinach in California and elsewhere where spinach is grown, and is caused by Peronospora effusa, an obligate, plant pathogenic oomycete. As in the case with most other crops damaged by downy mildews, spinach downy mildew culminates in ...

  10. Edgar Allan Poe and neurology.

    PubMed

    Teive, Hélio Afonso Ghizoni; Paola, Luciano de; Munhoz, Renato Puppi

    2014-06-01

    Edgar Allan Poe was one of the most celebrated writers of all time. He published several masterpieces, some of which include references to neurological diseases. Poe suffered from recurrent depression, suggesting a bipolar disorder, as well as alcohol and drug abuse, which in fact led to his death from complications related to alcoholism. Various hypotheses were put forward, including Wernicke's encephalopathy.

  11. Allan Bloom, America, and Education.

    ERIC Educational Resources Information Center

    West, Thomas

    2000-01-01

    Refutes the claims of Allan Bloom that the source of the problem with today's universities is modern philosophy, that the writings and ideas of Hobbes and Locke planted the seeds of relativism in American culture, and that the cure is Great Books education. Suggests instead that America's founding principles are the only solution to the failure of…

  12. Allan Bloom, America, and Education.

    ERIC Educational Resources Information Center

    West, Thomas

    2000-01-01

    Refutes the claims of Allan Bloom that the source of the problem with today's universities is modern philosophy, that the writings and ideas of Hobbes and Locke planted the seeds of relativism in American culture, and that the cure is Great Books education. Suggests instead that America's founding principles are the only solution to the failure of…

  13. Allan Bloom's Quarrel with History.

    ERIC Educational Resources Information Center

    Thompson, James

    1988-01-01

    Responds to Allan Bloom's "The Closing of the American Mind." Concludes that despite cranky comments about bourgeois culture, the focus of Bloom's attack is on historicism, which undercuts his nostalgic vision of a prosperous and just America. Condemns Bloom's exclusion of Blacks, Hispanics, and women from America's cultural heritage.…

  14. Forecasting and management of hop downy mildew

    USDA-ARS?s Scientific Manuscript database

    Downy mildew of hop, caused by Pseudoperonospora humuli, is managed in the Pacific Northwestern U.S. by regular application of fungicides. A degree-day model that forecasts the first emergence of shoots systemically infection with P. humuli (termed basal spikes) and a risk index for secondary sprea...

  15. Forecasting and management of hop downy mildew

    USDA-ARS?s Scientific Manuscript database

    Downy mildew of hop, caused by Pseudoperonospora humuli, is managed in the Pacific Northwestern U.S. by regular application of fungicides. A degree-day model that forecasts the first emergence of shoots systemically infection with P. humuli (termed basal spikes) and a risk index for secondary sprea...

  16. Genetics of resistance against lettuce downy mildew

    USDA-ARS?s Scientific Manuscript database

    Lettuce (Lactuca sativa) is one of the most valuable vegetable crops in the U.S. Downy mildew (DM), caused by Bremia lactucae, is the most important foliar disease of lettuce worldwide, which decreases the quality of the marketable portion of the crop. The use of resistant varieties carrying dominan...

  17. Estimating the Modified Allan Variance

    NASA Technical Reports Server (NTRS)

    Greenhall, Charles

    1995-01-01

    The third-difference approach to modified Allan variance (MVAR) leads to a tractable formula for a measure of MVAR estimator confidence, the equivalent degrees of freedom (edf), in the presence of power-law phase noise. The effect of estimation stride on edf is tabulated. A simple approximation for edf is given, and its errors are tabulated. A theorem allowing conservative estimates of edf in the presence of compound noise processes is given.

  18. Epidemiology of Basil Downy Mildew.

    PubMed

    Cohen, Yigal; Ben Naim, Yariv; Falach, Lidan; Rubin, Avia E

    2017-06-09

    Basil downy mildew (BDM) caused by the oomycete Peronospora belbahrii is a destructive disease of sweet basil (Ocimum basilicum) worldwide. It originated in Uganda in the 1930s and recently spread to Europe, the Middle East, Americas, and the Far East. Seed transmission may be responsible for its quick global spread. The pathogen attacks leaf blades, producing chlorotic lesions with ample dark asexual spores on the lower leaf surface. Oospores may form in the mesophyll of infected leaves. The asexual spores germinate on a wet leaf surface within 2 h and penetrate into the epidermis within 4 h. Spore germination and infection occur at a wide range of temperatures from 5 to 28.5°C. Infection intensity depends on the length of dew period, leaf temperature, and inoculum dose. The duration of latent period (from infection to sporulation) extends from 5 to 10 days, depending on temperature and light regime. The shortest is 5 days at 25°C under continuous light. Sporulation requires high humidity but not free leaf wetness. Sporulation occurs at 10 to 26°C. At the optimum temperature of 18°C, the process of sporulation requires 7.5 h at relative humidity ≥ 85%, with 3 h for sporophores emergence from stomata and 4.5 h for spore formation. Sporophores can emerge under light or darkness, but spore formation occurs in the dark only. Limited data are available on spore dispersal. Spores dispersed from sporulating plants contaminate healthy plants within 2 h of exposure. Settled spores may survive on leaf surface of healthy plants for prolonged periods, depending on temperature. Seed transmission of the disease occurs in Europe, but not in Israel or the United States. P. belbahrii in Israel also attacks species belonging to Rosemarinus, Nepeta, Agastache, Micromeria, and Salvia but not Plectranthus (coleus). A Peronospora species that infects coleus does not infect sweet basil. Control of BDM includes chemical, physical, and genetic means. The fungicide mefenoxam was

  19. A Wavelet Perspective on the Allan Variance.

    PubMed

    Percival, Donald B

    2016-04-01

    The origins of the Allan variance trace back 50 years ago to two seminal papers, one by Allan (1966) and the other by Barnes (1966). Since then, the Allan variance has played a leading role in the characterization of high-performance time and frequency standards. Wavelets first arose in the early 1980s in the geophysical literature, and the discrete wavelet transform (DWT) became prominent in the late 1980s in the signal processing literature. Flandrin (1992) briefly documented a connection between the Allan variance and a wavelet transform based upon the Haar wavelet. Percival and Guttorp (1994) noted that one popular estimator of the Allan variance-the maximal overlap estimator-can be interpreted in terms of a version of the DWT now widely referred to as the maximal overlap DWT (MODWT). In particular, when the MODWT is based on the Haar wavelet, the variance of the resulting wavelet coefficients-the wavelet variance-is identical to the Allan variance when the latter is multiplied by one-half. The theory behind the wavelet variance can thus deepen our understanding of the Allan variance. In this paper, we review basic wavelet variance theory with an emphasis on the Haar-based wavelet variance and its connection to the Allan variance. We then note that estimation theory for the wavelet variance offers a means of constructing asymptotically correct confidence intervals (CIs) for the Allan variance without reverting to the common practice of specifying a power-law noise type a priori. We also review recent work on specialized estimators of the wavelet variance that are of interest when some observations are missing (gappy data) or in the presence of contamination (rogue observations or outliers). It is a simple matter to adapt these estimators to become estimators of the Allan variance. Finally we note that wavelet variances based upon wavelets other than the Haar offer interesting generalizations of the Allan variance.

  20. Habitat Suitability Index Models: Downy woodpecker

    USGS Publications Warehouse

    Schroeder, Richard L.

    1983-01-01

    A review and synthesis of existing information was used to develop a habitat model for the downy woodpecker (Picoides eubescens). The model is scaled to produce an index of habitat suitability between 0 (unsuitable habitat) and 1 (optimally suitable habitat) for areas of the continental United States. Habitat suitability indexes are designed for use with Habitat Evaluation Procedures previously developed by the U.S. Fish and Wildlife Service.

  1. Estimating the Modified Allan Variance

    NASA Technical Reports Server (NTRS)

    Greenhall, Charles

    1995-01-01

    A paper at the 1992 FCS showed how to express the modified Allan variance (mvar) in terms of the third difference of the cumulative sum of time residuals. Although this reformulated definition was presented merely as a computational trick for simplifying the calculation of mvar estimates, it has since turned out to be a powerful theoretical tool for deriving the statistical quality of those estimates in terms of their equivalent degrees of freedom (edf), defined for an estimator V by edf V = 2(EV)2/(var V). Confidence intervals for mvar can then be constructed from levels of the appropriate 2 distribution.

  2. Integrated management of downy brome in winter wheat

    USDA-ARS?s Scientific Manuscript database

    Downy brome (Bromus tectorum L.), also known as cheatgrass, was introduced into North America from the Mediterranean area of Europe. It was first identified in the eastern United States in 1861, and by 1914 this invasive weed had spread throughout the continent. Downy brome is adapted to climates wi...

  3. Downy brome seed ecology: From flower to emergence

    USDA-ARS?s Scientific Manuscript database

    Downy brome (Bromus tectorum) seed is very common in seed banks throughout Great Basin rangelands. Previously, using a soil bioassay method, we tested 100 separate sites within the Great Basin (1000 samples) to measure downy brome seed bank densities. The locations differed greatly by precipitation,...

  4. Evaluation of fungicides for hop downy mildew, Woodburn, Oregon, 2016

    USDA-ARS?s Scientific Manuscript database

    This research was conducted to quantify the degree of control of the disease downy mildew with a phosphorous acid-based fungicide, the present industry-standard for management of downy mildew on hop in the Pacific Northwestern U.S. No suppression of the disease was observed with the industry standa...

  5. Phenology of exotic invasive weeds associated with downy brome

    USDA-ARS?s Scientific Manuscript database

    The exotic and highly invasive annual grass downy brome (Bromus tectorum) has invaded millions of hectares of rangelands throughout the Intermountain West. Downy brome increases the chance, rate, season and spread of wildfires, resulting in the destruction of native plant communities and the wildli...

  6. Epidemiology and control of spinach downy mildew in coastal California

    USDA-ARS?s Scientific Manuscript database

    The most serious threat to global fresh market spinach production is spinach downy mildew, caused by the obligate biotrophic pathogen, Peronospora effusa. Downy mildew causes yellow chlorotic lesions on spinach leaf tissue, often accompanied by abundant sporulation on the undersides of leaves. Very ...

  7. Detection of spinach downy mildew during latent infection

    USDA-ARS?s Scientific Manuscript database

    Downy mildew of spinach is caused by the plant pathogenic microorganism Peronospora effusa. In California, where nearly 75% of the US fresh spinach crop is grown, downy mildew causes millions of dollars in losses annually. The disease is currently controlled by fungicide applications in convention...

  8. Edgar Allan Poe's Physical Cosmology

    NASA Astrophysics Data System (ADS)

    Cappi, Alberto

    1994-06-01

    In this paper I describe the scientific content of Eureka, the prose poem written by Edgar Allan Poe in 1848. In that work, starting from metaphysical assumptions, Poe claims that the Universe is finite in an infinite Space, and that it was originated from a primordial Particle, whose fragmentation under the action of a repulsive force caused a diffusion of atoms in space. I will show that his subsequently collapsing universe represents a scientifically acceptable Newtonian model. In the framework of his evolving universe, Poe makes use of contemporary astronomical knowledge, deriving modern concepts such as a primordial atomic state of the universe and a common epoch of galaxy formation. Harrison found in Eureka the first, qualitative solution of the Olbers' paradox; I show that Poe also applies in a modern way the anthropic principle, trying to explain why the Universe is so large.

  9. Studies on the reproductive biology of downy brome (Bromus tectorum)

    SciTech Connect

    Richardson, J.M.

    1986-01-01

    The ability of downy brome to successfully infest crop lands is partially due to its prolific nature. To better understand its reproductive biology, studies investigating (1) effects of temperature and photoperiod on flowering, (2) prevention of downy brome seed information with herbicides, and (3) effects of drought on reproduction, were conducted. Seedling vernalization was more effective than seed vernalization in promoting downy brome flowering. Vernalizing imbibed downy brome caryopses at 3 C for 0 to 30 days did not induce rapid flowering. Downy brome seedlings were exposed to six photoperiod/temperature treatments. After transfer to long days, plants from the short da/3 C treatment flowered within 30 days. DPX-Y6202 and fluazifop-butyl were tested for their ability to prevent seed formation in downy brome. Fluazifop-butyl prevented seed formation over a wider range of application rates and growth stages than did DPX-Y6202. Seed production was prevented most readily by herbicide applications made early in the reproductive cycle. Translocation of radiolabel was greater with /sup 14/C-fluazifop-butyl than with /sup 14/C-DPX-Y6202, particularly into developing spikelets. Microautoradiographic techniques were used to identify mechanisms involved in the prevention of downy brome seed formation by these herbicides. Tissue localization of both herbicides was similar. The highest concentration of radiolabel was found in developing pollen grains, suggesting that the herbicides prevented seed formation by interrupting pollen development or function. Water stress reduced apparent photosynthesis and increased diffusive resistance of flag leaves.

  10. Downy mildews on ornamental plants and their control.

    PubMed

    Skrzypczak, C

    2006-01-01

    Among downy mildews occurring on ornamentals in Poland the most dangerous are downy mildew of rose and downy mildew of German statice (Tartarian statice). Downy mildew of rose caused by Peronospora sparsa Berk. is a serious threat to commercial cultivation of cut roses, especially grown under plastic tunnels. Peronospora statices Lobik casual agent of German statice downy mildew can causes the total losses in the second year of statice cultivation more than 70%. Both pathogens are very difficult to control. Effectiveness of azoxystrobine, cymoxanil + famoxate, mancozeb, phosethyl aluminium, phosethyl aluminium + fenamidone, propamocarb in the control of P. sparsa and P. statices was presented. In the control of statice downy mildew none of tested compounds was able to control satisfactory the pathogen. Relatively the best results were obtained with mixture of fenamidone (88 microg/cm3) and phosethyl AL (1334 microg/cm3). In the control of rose downy mildew, the best results were obtained with phosethyl Al at concentration 1600 microg/cm3.

  11. Development of an assay for rapid detection of the lettuce downy mildew pathogen, Bremia lactucae

    USDA-ARS?s Scientific Manuscript database

    Downy mildew of lettuce, caused by Bremia lactucae, causes chlorosis on leaves and adversely affects marketability. Though downy mildew on lettuce can be controlled by fungicide applications, it is costly to routinely apply fungicides to prevent the establishment of downy mildew. Repeated use of the...

  12. Genetics of downy mildew resistance in two interspecific hybrid grapevine families

    USDA-ARS?s Scientific Manuscript database

    Due to lack of co-evolution with Plasmopara viticola, the causal pathogen of grapevine downy mildew, nearly all cultivated grapevines are susceptible to downy mildew, whereas their wild relatives are frequently resistant. In order to find QTL for downy mildew resistance and susceptibility, we perfor...

  13. John A. Scigliano Interviews Allan B. Ellis.

    ERIC Educational Resources Information Center

    Scigliano, John A.

    2000-01-01

    This interview with Allan Ellis focuses on a history of computer applications in education. Highlights include work at the Harvard Graduate School of Education; the New England Education Data System; and efforts to create a computer-based distance learning and development program called ISVD (Information System for Vocational Decisions). (LRW)

  14. Allan-Herndon syndrome. I. Clinical studies.

    PubMed Central

    Stevenson, R E; Goodman, H O; Schwartz, C E; Simensen, R J; McLean, W T; Herndon, C N

    1990-01-01

    A large family with X-linked mental retardation, originally reported in 1944 by Allan, Herndon, and Dudley, has been reinvestigated. Twenty-nine males have been affected in seven generations. Clinical features include severe mental retardation, dysarthria, ataxia, athetoid movements, muscle hypoplasia, and spastic paraplegia with hyperreflexia, clonus, and Babinski reflexes. The facies appear elongated with normal head circumference, bitemporal narrowing, and large, simple ears. Contractures develop at both small and large joint. Statural growth is normal and macroorchidism does not occur. Longevity is not impaired. High-resolution chromosomes, serum creatine kinase, and amino acids are normal. This condition, termed the Allan-Herndon syndrome, appears distinct from other X-linked disorders having mental retardation, muscle hypoplasia, and spastic paraplegia. Images Figure 2 Figure 3 PMID:2393019

  15. [The medical history of Edgar Allan Poe].

    PubMed

    Miranda C, Marcelo

    2007-09-01

    Edgar Allan Poe, one of the best American storytellers and poets, suffered an episodic behaviour disorder partially triggered by alcohol and opiate use. Much confusion still exists about the last days of his turbulent life and the cause of his death at an early age. Different etiologies have been proposed to explain his main medical problem, however, complex partial seizures triggered by alcohol, poorly recognized at the time when Poe lived, seems to be one of the most acceptable hypothesis, among others discussed.

  16. The Cosmology of Edgar Allan Poe

    NASA Astrophysics Data System (ADS)

    Cappi, Alberto

    2011-06-01

    Eureka is a ``prose poem'' published in 1848, where Edgar Allan Poe presents his original cosmology. While starting from metaphysical assumptions, Poe develops an evolving Newtonian model of the Universe which has many and non casual analogies with modern cosmology. Poe was well informed about astronomical and physical discoveries, and he was influenced by both contemporary science and ancient ideas. For these reasons, Eureka is a unique synthesis of metaphysics, art and science.

  17. AFLP studies on downy-mildew-resistant and downy-mildew-susceptible genotypes of opium poppy.

    PubMed

    Dubey, Mukesh K; Shasany, Ajit K; Dhawan, Om P; Shukla, Ashutosh K; Khanuja, Suman P S

    2010-04-01

    Downy mildew (DM) caused by Peronospora arborescens, is a serious disease in opium poppy (Papaver somniferum), which has a world-wide spread. The establishment of DM-resistant cultivars appears to be a sustainable way to control the In this paper, we present the results of a study aimed at the identification of amplified fragment length polymorphism (AFLP) markers for DM-resistance in opium poppy. Three opium poppy genotypes (inbred over about 10 years): Pps-1 (DM-resistant), Jawahar-16 (DM-susceptible) and H-9 (DM-susceptible) were crossed in a diallel manner and the F(1) progeny along with the parents were subjected to AFLP analysis of chloroplast (cp) and nuclear DNA with seven and nine EcoRI / MseI primer combinations, respectively. cpDNA AFLP analysis identified 24 Pps-1 (DM-resistant)-specific unique fragments that were found to be maternally inherited in both the crosses, Pps-1 x Jawahar-16 and Pps-1 x H-9. In the case of nuclear DNA AFLP analysis, it was found that 17 fragments inherited from Pps-1 were common to the reciprocal crosses of both (i) Pps-1 and Jawahar-16 as well as (ii) Pps-1 and H-9. This is the first molecular investigation on the identification of polymorphism between DM-resistant and DM-susceptible opium poppy genotypes and development of DM-resistant opium poppy genotypespecific AFLP markers. These AFLP markers could be used in future genetic studies for analysis of linkage to the downy mildew resistance trait.

  18. The Downy Mildews: so many genomes, so little time

    USDA-ARS?s Scientific Manuscript database

    Downy mildews (DMs) are obligate biotrophic oomycete pathogens that cause diseases on a wide range of plant species. Individual species exhibit a high degree of host specialization. We have utilized next generation sequencing to efficiently generate de novo genome assemblies of multiple geographica...

  19. Spatiotemporal patterns in the airborne dispersal of spinach downy mildew

    USDA-ARS?s Scientific Manuscript database

    Downy mildew, caused by the biotrophic oomycete pathogen, Peronospora effusa, is the most devastating disease of spinach that threatens sustainable production. The disease results in yellow lesions that render leaves unmarketable as the high value fresh produce. In this study, the levels of D...

  20. Evaluation of fungicides for hop downy mildew, Hubbard, Oregon, 2016

    USDA-ARS?s Scientific Manuscript database

    This research was conducted to quantify the degree of control of the disease with a phosphorous acid-based fungicide, the present industry-standard for management of downy mildew on hop in the Pacific Northwestern U.S. No suppression of the disease was observed with the industry standard fungicide,...

  1. Ann Wagner, Mechanical Engineer.

    ERIC Educational Resources Information Center

    Bennett, Betsy K.

    1996-01-01

    Presents a profile of Ann Wagner, a mechanical engineer at the Goddard Space Flight Center in Maryland, and her job responsibilities there. Also includes a brief history of mechanical engineering as well as a sample graph and data activity sheet with answers. (AIM)

  2. Beyond Anne Frank.

    ERIC Educational Resources Information Center

    Kunczt, Kim

    1993-01-01

    According to a former junior high school teacher, eighth graders--inquisitive and opinionated--are not too young to grasp the impact of the Holocaust. This teacher went beyond "The Diary of Anne Frank" to push deeply into topics of genocide, racism, prejudice, and persecution. Students approached this discussion by considering examples…

  3. Ann Wagner, Mechanical Engineer.

    ERIC Educational Resources Information Center

    Bennett, Betsy K.

    1996-01-01

    Presents a profile of Ann Wagner, a mechanical engineer at the Goddard Space Flight Center in Maryland, and her job responsibilities there. Also includes a brief history of mechanical engineering as well as a sample graph and data activity sheet with answers. (AIM)

  4. Allan R. Sanford (1927–2016)

    DOE PAGES

    Hartse, Hans Edward

    2016-12-07

    Allan (Al) R. Sanford, professor of geophysics, emeritus, at New Mexico Tech (NMT) passed away quietly at his home in Woodinville, WA on August 9, 2016. He was 89. Al was a pioneer in the recording and interpretation of microearthquake seismograms. For decades he was the leading authority concerning seismicity across New Mexico and within the Rio Grande Rift (RGR). He published numerous papers with graduate students and colleagues on the unique, high-amplitude reflected phases seen on Socorro-area microearthquake records.

  5. Maniac Talk - Dr. Anne Thompson

    NASA Image and Video Library

    2014-04-30

    Anne Thompson Maniac Lecture, 30 April 2014 NASA climate scientist Dr. Anne Thompson presented a Maniac Talk entitled "A Career in Many Ozone Layers." Anne shared some of her long scientific career both as a researcher at Goddard and Meteorology professor at Penn State. She also described some of the problems she has worked on and tried to convey an enthusiasm for Earth Observations

  6. Mutants of downy mildew resistance in Lactuca sativa (lettuce).

    PubMed

    Okubara, P A; Anderson, P A; Ochoa, O E; Michelmore, R W

    1994-07-01

    As part of our investigation of disease resistance in lettuce, we generated mutants that have lost resistance to Bremia lactucae, the casual fungus of downy mildew. Using a rapid and reliable screen, we identified 16 distinct mutants of Latuca sativa that have lost activity of one of four different downy mildew resistance genes (Dm). In all mutants, only a single Dm specificity was affected. Genetic analysis indicated that the lesions segregated as single, recessive mutations at the Dm loci. Dm3 was inactivated in nine of the mutants. One of five Dm 1 mutants was selected from a population of untreated seeds and therefore carried a spontaneous mutation. All other Dm1, Dm3, Dm5/8 and Dm7 mutants were derived from gamma- or fast neutron-irradiated seed. In two separate Dm 1 mutants and in each of the eight Dm3 mutants analyzed, at least one closely linked molecular marker was absent. Also, high molecular weight genomic DNA fragments that hybridized to a tightly linked molecular marker in wild type were either missing entirely or were truncated in two of the Dm3 mutants, providing additional evidence that deletions had occurred in these mutants. Absence of mutations at loci epistatic to the Dm genes suggested that such loci were either members of multigene families, were critical for plant survival, or encoded components of duplicated pathways for resistance; alternatively, the genes determining downy mildew resistance might be limited to the Dm loci.

  7. Mutants of Downy Mildew Resistance in Lactuca Sativa (Lettuce)

    PubMed Central

    Okubara, P. A.; Anderson, P. A.; Ochoa, O. E.; Michelmore, R. W.

    1994-01-01

    As part of our investigation of disease resistance in lettuce, we generated mutants that have lost resistance to Bremia lactucae, the casual fungus of downy mildew. Using a rapid and reliable screen, we identified 16 distinct mutants of Latuca sativa that have lost activity of one of four different downy mildew resistance genes (Dm). In all mutants, only a single Dm specificity was affected. Genetic analysis indicated that the lesions segregated as single, recessive mutations at the Dm loci. Dm3 was inactivated in nine of the mutants. One of five Dm1 mutants was selected from a population of untreated seeds and therefore carried a spontaneous mutation. All other Dm1, Dm3, Dm5/8 and Dm7 mutants were derived from γ- or fast neutron-irradiated seed. In two separate Dm1 mutants and in each of the eight Dm3 mutants analyzed, at least one closely linked molecular marker was absent. Also, high molecular weight genomic DNA fragments that hybridized to a tightly linked molecular marker in wild type were either missing entirely or were truncated in two of the Dm3 mutants, providing additional evidence that deletions had occurred in these mutants. Absence of mutations at loci epistatic to the Dm genes suggested that such loci were either members of multigene families, were critical for plant survival, or encoded components of duplicated pathways for resistance; alternatively, the genes determining downy mildew resistance might be limited to the Dm loci. PMID:8088530

  8. Resistance Against Basil Downy Mildew in Ocimum Species.

    PubMed

    Ben-Naim, Yariv; Falach, Lidan; Cohen, Yigal

    2015-06-01

    Downy mildew, caused by the oomycete Peronospora belbahrii, is a devastating disease of sweet basil. In this study, 113 accessions of Ocimum species (83 Plant Introduction entries and 30 commercial entries) were tested for resistance against downy mildew at the seedling stage in growth chambers, and during three seasons, in the field. Most entries belonging to O. basilicum were highly susceptible whereas most entries belonging to O. americanum, O. kilimanadascharicum, O. gratissimum, O. campechianum, or O. tenuiflorum were highly resistant at both the seedling stage and the field. Twenty-seven highly resistant individual plants were each crossed with the susceptible sweet basil 'Peri', and the F1 progeny plants were examined for disease resistance. The F1 plants of two crosses were highly resistant, F1 plants of 24 crosses were moderately resistant, and F1 plants of one cross were susceptible, suggesting full, partial, or no dominance of the resistance gene(s), respectively. These data confirm the feasibility of producing downy mildew-resistant cultivars of sweet basil by crossing with wild Ocimum species.

  9. Radio-Echo Sounding in the Allan Hills, Antarctica, in Support of the Meteorite Field Program.

    DTIC Science & Technology

    1980-05-01

    ice. The results also revealed internal layering within the snow on Ross Island and in the snow filling an ice depres- sion west of Allan Nunatak ...Radio-echo sounding also gave the depth to bedrock near the west side of Allan Nunatak . The greatest ice depth measured was 310 m. • . 9Q3...Institute of Polar Research had installed across the blue ice surface extending westward from the Allan Nunatak . Allan Nunatak is located in the Allan

  10. Prevalence and incidence of sunflower downy mildew in North Dakota from 2001 to 2011

    USDA-ARS?s Scientific Manuscript database

    Sunflower downy mildew (Plasmopara halstedii) is an economic problem in sunflowers in North Dakota (ND), which historically produces about half the U.S. sunflower crop. From 2001 to 2011, the prevalence and incidence of downy mildew was monitored in ND as part of two large survey efforts, namely a m...

  11. Variation within and between Vitis species for foliar resistance to the downy mildew pathogen Plasmopara viticola

    USDA-ARS?s Scientific Manuscript database

    To complement existing control strategies, grape growers in humid climates desire cultivars with resistance to downy mildew, caused by Plasmopara viticola. Numerous disease resistance screens of diverse Vitis germplasm have previously been conducted to identify downy mildew resistance, but ratings o...

  12. Susceptibility of hop cultivars to downy mildew: associations with chemical characteristics and region of origin

    USDA-ARS?s Scientific Manuscript database

    Hop downy mildew is a yield limiting disease in many hop production regions of the world. In this research, 110 cultivars that are or were widely grown in the U.S., Europe, or Australasia were evaluated in western Oregon over three years for their reaction to the shoot infection phase of downy mild...

  13. Identification of QTLs conferring resistance to downy mildew in legacy cultivars of lettuce

    USDA-ARS?s Scientific Manuscript database

    Many cultivars of lettuce (Lactuca sativa L.), the most popular leafy vegetable, are susceptible to downy mildew disease caused by Bremia lactucae. Cultivars Iceberg and Grand Rapids that were released in 18th and 19th century, respectively, have high levels of quantitative resistance to downy milde...

  14. Examination of marker-assisted selection for powdery and downy mildew resistance

    USDA-ARS?s Scientific Manuscript database

    Field grown seedlings potentially carrying both the Run1 and Rpv1 loci for powdery and downy mildew resistance, respectively, from muscadine introgressions were assessed for resistance to both powdery and downy mildew. Powdery mildew was assessed in the field under no-spray conditions, while down mi...

  15. Evaluation of commercial melon varieties for tolerance to downy mildew, 2010

    USDA-ARS?s Scientific Manuscript database

    In recent years, changes in the downy mildew pathogen have been detected particularly on cucumbers where previously resistant varieties have become susceptible. This study was undertaken to determine the performance of commercial melon varieties with resistance to downy mildew. This experiment was...

  16. Season-long dynamics of spinach downy mildew determined by spore trapping and disease

    USDA-ARS?s Scientific Manuscript database

    Peronospora effusa is an obligate oomycete pathogen, and the cause of downy mildew of spinach. Downy mildew threatens sustainable production of fresh market organic spinach in California, and routine fungicide sprays are often necessary for conventional production. In this study, airborne P. effus...

  17. Simple Sequence Repeat Markers Useful for Sorghum Downy Mildew (Peronosclerospora sorghi) and Related Species

    USDA-ARS?s Scientific Manuscript database

    A recent outbreak of sorghum downy mildew, in Texas, has led to the discovery of both metalaxyl resistance and a new pathotype in the causal organism, Peronosclerospora sorghi. These observations and the difficulty in resolving among phylogenetically related downy mildew pathogens dramatically poin...

  18. Pre- and post-infection activity of fungicides in control of hop downy mildew

    USDA-ARS?s Scientific Manuscript database

    Optimum timing and use of fungicides for disease control are improved by an understanding of the characteristics of fungicide physical mode of action, although this information is lacking for hop downy mildew. Control of downy mildew on leaves was similar among fungicides tested when applied prevent...

  19. Association of spring pruning practices with severity of powdery mildew and downy mildew on hop

    USDA-ARS?s Scientific Manuscript database

    Downy mildew and powdery mildew are important diseases of hop in the Pacific Northwest USA, and cultural practices may affect the severity of both diseases. The association of spring pruning quality and timing with severity of downy and powdery mildew from commercial hop yards in Oregon and Washingt...

  20. Rehabilitating downy brome (Bromus tectorum)-invaded scrublands using imazapic and seeding with native shrubs

    Treesearch

    Suzanne M. Owen; Carolyn Hull Sieg; Catherine A. Gehring

    2011-01-01

    Rehabilitation of downy brome-infested shrublands is challenging once this invasive grass dominates native communities. The effectiveness of imazapic herbicide in reducing downy brome cover has been variable, and there is uncertainty about the impacts of imazapic on native species. We used a before-after-control-impact (BACI) field experiment and greenhouse studies to...

  1. Returning succession to downy brome dominated rangelands: roadblocks to perennial grass establishment

    USDA-ARS?s Scientific Manuscript database

    The most common cause of successional retrogression in the Great Basin is wildfires fueled by downy brome (Bromus tectorum). Downy brome invasion has reduced fire intervals from an estimated 60-100 years down to 5-10 years. Our previous research found that establishment of long-lived perennial grass...

  2. Uranium series dating of Allan Hills ice

    NASA Technical Reports Server (NTRS)

    Fireman, E. L.

    1986-01-01

    Uranium-238 decay series nuclides dissolved in Antarctic ice samples were measured in areas of both high and low concentrations of volcanic glass shards. Ice from the Allan Hills site (high shard content) had high Ra-226, Th-230 and U-234 activities but similarly low U-238 activities in comparison with Antarctic ice samples without shards. The Ra-226, Th-230 and U-234 excesses were found to be proportional to the shard content, while the U-238 decay series results were consistent with the assumption that alpha decay products recoiled into the ice from the shards. Through this method of uranium series dating, it was learned that the Allen Hills Cul de Sac ice is approximately 325,000 years old.

  3. Allan Urho Paivio (1925-2016).

    PubMed

    Katz, Albert

    2017-01-01

    Presents an obituary for Allan Urho Paivio, who passed away on June 19, 2016. One of his many accomplishments was the development of a dual-coding theory. Dual-coding theory, while very influential, has, unfortunately, been discussed all too often as a theory of mental imagery, and not within its larger context wherein mental imagery and verbal processes are separable but interconnected representational systems, an academic battle in clarification that Paivio waged much of his life. He published prodigiously, even in the decades after retirement. Among his many honors, he served as president of the Canadian Psychological Association (1975) and was appointed a fellow of the Royal Society of Canada (1978). (PsycINFO Database Record (c) 2017 APA, all rights reserved).

  4. Uranium series dating of Allan Hills ice

    NASA Technical Reports Server (NTRS)

    Fireman, E. L.

    1986-01-01

    Uranium-238 decay series nuclides dissolved in Antarctic ice samples were measured in areas of both high and low concentrations of volcanic glass shards. Ice from the Allan Hills site (high shard content) had high Ra-226, Th-230 and U-234 activities but similarly low U-238 activities in comparison with Antarctic ice samples without shards. The Ra-226, Th-230 and U-234 excesses were found to be proportional to the shard content, while the U-238 decay series results were consistent with the assumption that alpha decay products recoiled into the ice from the shards. Through this method of uranium series dating, it was learned that the Allen Hills Cul de Sac ice is approximately 325,000 years old.

  5. 32. SCIENTISTS ALLAN COX (SEATED), RICHARD DOELL, AND BRENT DALRYMPLE ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    32. SCIENTISTS ALLAN COX (SEATED), RICHARD DOELL, AND BRENT DALRYMPLE AT CONTROL PANEL, ABOUT 1965. - U.S. Geological Survey, Rock Magnetics Laboratory, 345 Middlefield Road, Menlo Park, San Mateo County, CA

  6. Estimate product quality with ANNs

    SciTech Connect

    Brambilla, A.; Trivella, F.

    1996-09-01

    Artificial neural networks (ANNs) have been applied to predict catalytic reformer octane number (ON) and gasoline splitter product qualities. Results show that ANNs are a valuable tool to derive fast and accurate product quality measurements, and offer a low-cost alternative to online analyzers or rigorous mathematical models. The paper describes product quality measurements, artificial neural networks, ANN structure, estimating gasoline octane numbers, and estimating naphtha splitter product qualities.

  7. Maniac Talk - Dr. Anne Douglass

    NASA Image and Video Library

    2013-03-27

    Anne Douglass Maniac Lecture, 27 March, 2013 NASA climate scientist Dr. Anne Douglass presented a Maniac Talk entitled "Satellite Observations - the Touchstone of Atmospheric Modeling." Anne shared some of her scientific career that is filled with unexpected twists and turns and even a few blind alleys, but most important her passion in satellite measurements of ozone and other trace gases, which have been her touchstone.

  8. Anne Frank's headache.

    PubMed

    de Almeida, R F; Kowacs, P A

    2007-11-01

    There are a significant number of famous people who suffered from frequent headaches during their lifetime while also exerting an influence of some kind on politics or the course of history. One such person was Anneliese Marie Frank, the German-born Jewish teenager better known as Anne Frank, who was forced into hiding during World War II. When she turned 13, she received a diary as a present, named it 'Kitty' and started to record her experiences and feelings. She kept the diary during her period in hiding, describing her daily life, including the feeling of isolation, her fear of being discovered, her admiration for her father and her opinion about women's role in society, as well as the discovery of her own sexuality. She sometimes reported a headache that disturbed her tremendously. The 'bad' to 'terrifying' and 'pounding' headache attacks, which were accompanied by vomiting and during which she felt like screaming to be left alone, matched the International Headache Society criteria for probable migraine, whereas the 'more frequent headaches' described by Anne's father are more likely to have been tension-type headaches than headaches secondary to ocular or other disorders.

  9. Nocturnal Fanning Suppresses Downy Mildew Epidemics in Sweet Basil.

    PubMed

    Cohen, Yigal; Ben-Naim, Yariv

    2016-01-01

    Downy mildew is currently the most serious disease of sweet basil around the world. The oomycete causal agent Peronospora belbahrii requires ≥ 4h free leaf moisture for infection and ≥7.5h of water-saturated atmosphere (relative humidity RH≥95%) at night for sporulation. We show here that continued nocturnal fanning (wind speed of 0.4-1.5 m/s) from 8pm to 8am dramatically suppressed downy mildew development. In three experiments conducted during 2015, percent infected leaves in regular (non-fanned) net-houses reached a mean of 89.9, 94.3 and 96.0% compared to1.2, 1.7 and 0.5% in adjacent fanned net-houses, respectively. Nocturnal fanning reduced the number of hours per night with RH≥95% thus shortened the dew periods below the threshold required for infection or sporulation. In experiments A, B and C, the number of nights with ≥4h of RH≥95% was 28, 10 and 17 in the non-fanned net-houses compared to 5, 0 and 5 in the fanned net-houses, respectively. In the third experiment leaf wetness sensors were installed. Dew formation was strongly suppressed in the fanned net-house as compared to the non-fanned net-house. Healthy potted plants became infected and sporulated a week later if placed one night in the non-fanned house whereas healthy plants placed during that night in the fanned house remained healthy. Infected potted basil plants sporulated heavily after one night of incubation in the non-fanned house whereas almost no sporulation occurred in similar plants incubated that night in the fanned house. The data suggest that nocturnal fanning is highly effective in suppressing downy mildew epidemics in sweet basil. Fanning prevented the within-canopy RH from reaching saturation, reduced dew deposition on the leaves, and hence prevented both infection and sporulation of P. belbahrii.

  10. Spatiotemporal Patterns in the Airborne Dispersal of Spinach Downy Mildew.

    PubMed

    Choudhury, R A; Koike, S T; Fox, A D; Anchieta, A; Subbarao, K V; Klosterman, S J; McRoberts, N

    2017-01-01

    Downy mildew is the most devastating disease threatening sustainable spinach production, particularly in the organic sector. The disease is caused by the biotrophic oomycete pathogen Peronospora effusa, and the disease results in yellow lesions that render the crop unmarketable. In this study, the levels of DNA from airborne spores of P. effusa were assessed near a field of susceptible plants in Salinas, CA during the winter months of 2013-14 and 2014/15 using rotating-arm impaction spore-trap samplers that were assessed with a species-specific quantitative polymerase chain reaction (qPCR) assay. Low levels of P. effusa DNA were detectable from December through February in both winters but increased during January in both years, in correlation with observed disease incidence; sharp peaks in P. effusa DNA detection were associated with the onset of disease incidence. The incidence of downy mildew in the susceptible field displayed logistic-like dynamics but with considerable interseason variation. Analysis of the area under the disease progress curves suggested that the 2013-14 epidemic was significantly more severe than the 2014-15 epidemic. Spatial analyses indicated that disease incidence was dependent within an average range of 5.6 m, approximately equivalent to the width of three planted beds in a typical production field. The spatial distribution of spores captured during an active epidemic most closely fit a power-law distribution but could also be fit with an exponential distribution. These studies revealed two important results in the epidemiology of spinach downy mildew in California. First, they demonstrated the potential of impaction spore-trap samplers linked with a qPCR assay for indicating periods of high disease risk, as well as the detection of long-distance dispersal of P. effusa spores. Second, at the scale of individual crops, a high degree of spatial aggregation in disease incidence was revealed.

  11. ANN - based distribution system reconfiguration

    SciTech Connect

    Momoh, J.A.; Wang, Yanchun; Rizy, D.T.

    1997-08-01

    This paper describes an Artificial Neural Network (ANN) - based distribution system reconfiguration scheme to reduce system loss. The ANN is trained for different load levels and different network topologies. The proposed scheme has been tested using a 38 - bus distribution system. The results are very promising.

  12. Allan Hills Pleistocene Ice Project (PIP)

    NASA Astrophysics Data System (ADS)

    Kurbatov, A.; Brook, E.; Campbell, S. W.; Conway, H.; Dunbar, N. W.; Higgins, J. A.; Iverson, N. A.; Kehrl, L. M.; McIntosh, W. C.; Spaulding, N. E.; Yan, Y.; Mayewski, P. A.

    2016-12-01

    A major international effort to identify at least 1.5 Ma old ice for paleoclimate reconstructions has successfully resulted in the selection of several potential drill sites in East Antarctica. At this point it is indisputable that the Antarctic ice sheet captures a continuous envinronmental record of the Earth that spans the Mid Pleistocene Transition (MPT). In addition to traditional ice coring approaches, the oldest ice can also be recovered in Antarctic Blue Ice Areas (BIA). We have already successfully demonstrated that the Allan Hills (AH) BIA captures a regional climate signal and robust record of 1Ma atmosphere that can be studied with a relatively uncomplicated logistical imprint and essentially unlimited sampling volume. The attractiveness of unlimited sampling of known age ice is the basis for the "ice park" concept proposed earlier by our research team. The idea is that, once the age of ice exposed along the flow line at the surface of BIA is mapped, it could be sampled for numerous research projects as needed. Here we propose an intermediate ( 1,150 m deep) ice core drill site, located only 240 km away from McMurdo base that will help to develop a, continuous, high quality regional paleoclimate record that is at least 1Ma old. We will introduce and discuss the glaciological settings, paleoclimate signals and possible limitations and advantages of the 1 Ma AH BIA regional paleoclimate record. The research was funded by NSF Division of Polar Programs.

  13. Allan deviation analysis of financial return series

    NASA Astrophysics Data System (ADS)

    Hernández-Pérez, R.

    2012-05-01

    We perform a scaling analysis for the return series of different financial assets applying the Allan deviation (ADEV), which is used in the time and frequency metrology to characterize quantitatively the stability of frequency standards since it has demonstrated to be a robust quantity to analyze fluctuations of non-stationary time series for different observation intervals. The data used are opening price daily series for assets from different markets during a time span of around ten years. We found that the ADEV results for the return series at short scales resemble those expected for an uncorrelated series, consistent with the efficient market hypothesis. On the other hand, the ADEV results for absolute return series for short scales (first one or two decades) decrease following approximately a scaling relation up to a point that is different for almost each asset, after which the ADEV deviates from scaling, which suggests that the presence of clustering, long-range dependence and non-stationarity signatures in the series drive the results for large observation intervals.

  14. Two species of Gelechioidea (Lepidoptera) from Southeast Asia associated with downy rose myrtle, Rhodomyrtus tomentosa (Myrtaceae)

    USDA-ARS?s Scientific Manuscript database

    Two species of Gelechioidea (Lepidoptera), Metharmostis multilineata Adamski, n. sp. (Cosmopterigidae), and Idiophantis soreuta Meyrick, 1906 (Gelechiidae), were collected in southeastern Asia for evaluation as potential biocontrol agents against downy rose myrtle, Rhodomyrtus tomentosa (Aiton) Hass...

  15. Modal comparison of Yamato and Allan Hills polymict eucrites

    NASA Technical Reports Server (NTRS)

    Delaney, J. S.; Prinz, M.; Takeda, H.

    1983-01-01

    Seven Yamato and six Allan Hills polymict eucrite specimens were compared by modal analysis. The analyses reveal differences of plagioclase and pyroxene content between the two groups. The Yamato suite has more 'pigeonitic' pyroxene and less plagioclase and low-calcium pyroxene than the Allan Hills suite. Variations within each suite are small and three sections of Allan Hills A78040 are more variable than the Allen Hills suite considered as a group. Modal data provides a basis for pairing polymict eucrite specimens when used together with mineralogical and petrographic criteria. Modal data furthermore confirms the presence of several rock types previously identified using pyroxene crystallography and hints at the presence of an augite-rich component.

  16. Nocturnal Fanning Suppresses Downy Mildew Epidemics in Sweet Basil

    PubMed Central

    Cohen, Yigal; Ben-Naim, Yariv

    2016-01-01

    Downy mildew is currently the most serious disease of sweet basil around the world. The oomycete causal agent Peronospora belbahrii requires ≥ 4h free leaf moisture for infection and ≥7.5h of water-saturated atmosphere (relative humidity RH≥95%) at night for sporulation. We show here that continued nocturnal fanning (wind speed of 0.4–1.5 m/s) from 8pm to 8am dramatically suppressed downy mildew development. In three experiments conducted during 2015, percent infected leaves in regular (non-fanned) net-houses reached a mean of 89.9, 94.3 and 96.0% compared to1.2, 1.7 and 0.5% in adjacent fanned net-houses, respectively. Nocturnal fanning reduced the number of hours per night with RH≥95% thus shortened the dew periods below the threshold required for infection or sporulation. In experiments A, B and C, the number of nights with ≥4h of RH≥95% was 28, 10 and 17 in the non-fanned net-houses compared to 5, 0 and 5 in the fanned net-houses, respectively. In the third experiment leaf wetness sensors were installed. Dew formation was strongly suppressed in the fanned net-house as compared to the non-fanned net-house. Healthy potted plants became infected and sporulated a week later if placed one night in the non-fanned house whereas healthy plants placed during that night in the fanned house remained healthy. Infected potted basil plants sporulated heavily after one night of incubation in the non-fanned house whereas almost no sporulation occurred in similar plants incubated that night in the fanned house. The data suggest that nocturnal fanning is highly effective in suppressing downy mildew epidemics in sweet basil. Fanning prevented the within-canopy RH from reaching saturation, reduced dew deposition on the leaves, and hence prevented both infection and sporulation of P. belbahrii. PMID:27171554

  17. The Allan Hills icefield and its relationship to meteorite concentration

    NASA Technical Reports Server (NTRS)

    Annexstad, J. O.

    1982-01-01

    The Allan Hills icefield is described by as a limited icefield that has large concentrations of meteorites. The meteorites appear to be concentrated on the lower limb of an ice monocline with other finds scattered throughout the field. In an attempt to understand the mechanisms of meteorite concentration, a triangulation chain was established across the icefield. This chain is composed of 20 stations, two of which are on bedrock, and extends westward from the Allan Hills a distance of 15 kilometers. The triangulation chain and its relationship to the meteorite concentrations is shown.

  18. Allan Hills 77005 - A new meteorite type found in Antarctica

    NASA Technical Reports Server (NTRS)

    Mcsween, H. Y., Jr.; Taylor, L. A.; Stolper, E. M.

    1979-01-01

    A unique 482.5 g meteorite found in Antarctica appears to be related by igneous differentiation to shergottite achondrites, which have close similarities with terrestrial basaltic rocks. Zoned maskelynite with similar compositional ranges and plagioclase of such intermediate compositions as are unknown in other achondrites occur in both shergottites and the Allan Hills meteorite. The degree of silica saturation, however, strongly distinguishes the two meteorite types. It is suggested that the Allan Hills meteorite may represent a cumulate rock formed earlier than the shergottites from the same or a similar parent magma.

  19. Obituary: Allan R. Sandage (1926-2010)

    NASA Astrophysics Data System (ADS)

    Devorkin, David

    2011-12-01

    Allan Rex Sandage died of pancreatic cancer at his home in San Gabriel, California, in the shadow of Mount Wilson, on November 13, 2010. Born in Iowa City, Iowa, on June 18, 1926, he was 84 years old at his death, leaving his wife, former astronomer Mary Connelly Sandage, and two sons, David and John. He also left a legacy to the world of astronomical knowledge that has long been universally admired and appreciated, making his name synonymous with late 20th-Century observational cosmology. The only child of Charles Harold Sandage, a professor of advertising who helped establish that academic specialty after obtaining a PhD in business administration, and Dorothy Briggs Sandage, whose father was president of Graceland College in Iowa, Allan Sandage grew up in a thoroughly intellectual, university oriented atmosphere but also a peripatetic one taking him to Philadelphia and later to Illinois as his father rose in his career. During his 2 years in Philadelphia, at about age eleven, Allan developed a curiosity about astronomy stimulated by a friend's interest. His father bought him a telescope and he used it to systematically record sunspots, and later attempted to make a larger 6-inch reflector, a project left uncompleted. As a teenager Allan read widely, especially astronomy books of all kinds, recalling in particular The Glass Giant of Palomar as well as popular works by Eddington and Hubble (The Realm of the Nebulae) in the early 1940s. Although his family was Mormon, of the Reorganized Church, he was not practicing, though he later sporadically attended a Methodist church in Oxford, Iowa during his college years. Sandage knew by his high school years that he would engage in some form of intellectual life related to astronomy. He particularly recalls an influential science teacher at Miami University in Oxford, Ohio named Ray Edwards, who inspired him to think critically and "not settle for any hand-waving of any kind." [Interview of Allan Rex Sandage by Spencer

  20. Inheritance of downy mildew (Plasmopara viticola) and anthracnose (Sphaceloma ampelinum) resistance in grapevines.

    PubMed

    Poolsawat, O; Mahanil, S; Laosuwan, P; Wongkaew, S; Tharapreuksapong, A; Reisch, B I; Tantasawat, P A

    2013-12-13

    Downy mildew (Plasmopara viticola) and anthracnose (Sphaceloma ampelinum) are two of the major diseases of most grapevine (Vitis vinifera L.) cultivars grown in Thailand. Therefore, breeding grapevines for improved downy mildew and anthracnose resistance is crucial. Factorial crosses were made between three downy mildew and/or anthracnose resistant lines ('NY88.0517.01', 'NY65.0550.04', and 'NY65.0551.05'; male parents) and two or three susceptible cultivars of V. vinifera ('Black Queen', 'Carolina Black Rose', and/or 'Italia'; female parents). F1 hybrid seedlings were evaluated for downy mildew and anthracnose resistance using a detached/excised leaf assay. For both diseases, the general combining ability (GCA) variance among male parents was significant, while the variance of GCA among females and the specific combining ability (SCA) variance were not significant, indicating the prevalence of additive over non-additive gene actions. The estimated narrow sense heritabilities of downy mildew and anthracnose resistance were 55.6 and 79.2%, respectively, suggesting that downy mildew/anthracnose resistance gene(s) were highly heritable. The 'Carolina Black Rose x NY65.0550.04' cross combination is recommended for future use.

  1. Measurements of morphology and refractive indexes on human downy hairs using three-dimensional quantitative phase imaging.

    PubMed

    Lee, SangYun; Kim, Kyoohyun; Lee, Yuhyun; Park, Sungjin; Shin, Heejae; Yang, Jongwon; Ko, Kwanhong; Park, HyunJoo; Park, YongKeun

    2015-01-01

    We present optical measurements of morphology and refractive indexes (RIs) of human downy arm hairs using three-dimensional (3-D) quantitative phase imaging techniques. 3-D RI tomograms and high-resolution two-dimensional synthetic aperture images of individual downy arm hairs were measured using a Mach–Zehnder laser interferometric microscopy equipped with a two-axis galvanometer mirror. From the measured quantitative images, the RIs and morphological parameters of downy hairs were noninvasively quantified including the mean RI, volume, cylinder, and effective radius of individual hairs. In addition, the effects of hydrogen peroxide on individual downy hairs were investigated.

  2. Measurements of morphology and refractive indexes on human downy hairs using three-dimensional quantitative phase imaging

    NASA Astrophysics Data System (ADS)

    Lee, SangYun; Kim, Kyoohyun; Lee, Yuhyun; Park, Sungjin; Shin, Heejae; Yang, Jongwon; Ko, Kwanhong; Park, HyunJoo; Park, YongKeun

    2015-11-01

    We present optical measurements of morphology and refractive indexes (RIs) of human downy arm hairs using three-dimensional (3-D) quantitative phase imaging techniques. 3-D RI tomograms and high-resolution two-dimensional synthetic aperture images of individual downy arm hairs were measured using a Mach-Zehnder laser interferometric microscopy equipped with a two-axis galvanometer mirror. From the measured quantitative images, the RIs and morphological parameters of downy hairs were noninvasively quantified including the mean RI, volume, cylinder, and effective radius of individual hairs. In addition, the effects of hydrogen peroxide on individual downy hairs were investigated.

  3. Distributional changes and range predictions of downy brome (Bromus tectorum) in Rocky Mountain National Park

    USGS Publications Warehouse

    Bromberg, J.E.; Kumar, S.; Brown, C.S.; Stohlgren, T.J.

    2011-01-01

    Downy brome (Bromus tectorum L.), an invasive winter annual grass, may be increasing in extent and abundance at high elevations in the western United States. This would pose a great threat to high-elevation plant communities and resources. However, data to track this species in high-elevation environments are limited. To address changes in the distribution and abundance of downy brome and the factors most associated with its occurrence, we used field sampling and statistical methods, and niche modeling. In 2007, we resampled plots from two vegetation surveys in Rocky Mountain National Park for presence and cover of downy brome. One survey was established in 1993 and had been resampled in 1999. The other survey was established in 1996 and had not been resampled until our study. Although not all comparisons between years demonstrated significant changes in downy brome abundance, its mean cover increased nearly fivefold from 1993 (0.7%) to 2007 (3.6%) in one of the two vegetation surveys (P = 0.06). Although the average cover of downy brome within the second survey appeared to be increasing from 1996 to 2007, this slight change from 0.5% to 1.2% was not statistically significant (P = 0.24). Downy brome was present in 50% more plots in 1999 than in 1993 (P = 0.02) in the first survey. In the second survey, downy brome was present in 30% more plots in 2007 than in 1996 (P = 0.08). Maxent, a species-environmental matching model, was generally able to predict occurrences of downy brome, as new locations were in the ranges predicted by earlier generated models. The model found that distance to roads, elevation, and vegetation community influenced the predictions most. The strong response of downy brome to interannual environmental variability makes detecting change challenging, especially with small sample sizes. However, our results suggest that the area in which downy brome occurs is likely increasing in Rocky Mountain National Park through increased frequency and cover

  4. Numbers Of Degrees Of Freedom Of Allan-Variance Estimators

    NASA Technical Reports Server (NTRS)

    Greenhall, Charles A.

    1992-01-01

    Report discusses formulas for estimation of Allan variances. Presents algorithms for closed-form approximations of numbers of degrees of freedom characterizing results obtained when various estimators applied to five power-law components of classical mathematical model of clock noise.

  5. Biotechnology Symposium - In Memoriam, the Late Dr. Allan Zipf

    USDA-ARS?s Scientific Manuscript database

    A one-day biotechnology symposium was held at Alabama A&M University (AAMU), Normal, AL on June 4, 2004 in memory of the late Dr. Allan Zipf (Sept 1953-Jan 2004). Dr. Zipf was a Research Associate Professor at the Department of Plant and Soil Sciences, AAMU, who collaborated extensively with ARS/MS...

  6. Allan Variance Calculation for Nonuniformly Spaced Input Data

    DTIC Science & Technology

    2015-01-01

    Approved for public release; distribution is unlimited. 13. SUPPLEMENTARY NOTES 14. ABSTRACT The Allan Variance ( AV ) characterizes the...temporal randomness in sensor output data streams at various times scales. The conventional formula for calculating the AV assumes that the data...presents a modified approach to AV calculation, which accommodates nonuniformly spaced time samples. The basic concept of the modified approach is

  7. Allan Sandage : L'architecte de l'expansion

    NASA Astrophysics Data System (ADS)

    Bonnet-Bidaud, J. M.

    1998-07-01

    Il fut de cette poignee de pionniers qui ouvrirent le monde extragalactique. Depuis pres de 50 ans, Allan Sandage poursuit la quete amorcee par le "maitre" Edwin Hubble : mesurer le taux d'expansion de l'Univers. Rencontre avec une legende vivante de la cosmologie...

  8. Effects of soil amendments on germination and emergence of downy brome (Bromus tectorum) and Hilaria jamesii

    USGS Publications Warehouse

    Belnap, J.; Sherrod, S.K.; Miller, M.E.

    2003-01-01

    Downy brome is an introduced Mediterranean annual grass that now dominates millions of hectares of western U.S. rangelands. The presence of this grass has eliminated many native species and accelerated wildfire cycles. The objective of this study was to identify soil additives that allowed germination but inhibited emergence of downy brome, while not affecting germination or emergence of the native perennial grass Hilaria jamesii. On the basis of data from previous studies, we focused on additives that altered the availability of soil nitrogen (N), phosphorus (P), and potassium (K). Most water-soluble treatments inhibited downy brome germination and emergence. We attribute the inhibitory effects of these treatments to excessive salinity and ion-specific effects of the additives themselves. An exception to this was oxalic acid, which showed no effect. Most water-insoluble treatments had no effect in soils with high P but did have an effect in soils with low P. Zeolite was effective regardless of P level, probably due to the high amounts of Na+ it added to the soil solution. Most treatments at higher concentrations resulted in lower downy brome emergence rates in soils currently dominated by downy brome than in uninvaded (but theoretically invadable) Hilaria soils. This difference is possibly attributable to inherent differences in labile soil P. In Stifa soils, where Stipa spp. grow, but which are generally considered to be uninvadable by downy brome, additions of high amounts of N resulted in lower emergence. This may have been an effect of NH4+ interference with uptake of K or other cations or toxicity of high N. We also saw a positive relationship between downy brome emergence and pH in Stipa soils. Hilaria development parameters were not as susceptible to the treatments, regardless of concentration, as downy brome. Our results suggest that there are additions that may be effective management tools for inhibiting downy brome in calcareous soils, including (1

  9. Genetic mapping of HA-R4 identified the downy mildew resistance gene to races 300, 770, and 734

    USDA-ARS?s Scientific Manuscript database

    The major genes for sunflower downy mildew resistance have been designated as Pl genes. Many Pl genes have been reported, with 10 of them having been mapped. In this study, we report the molecular mapping of the Pl gene in a downy mildew differential line HA-R4, which has been temporarily named PlHA...

  10. First report of impatiens downy mildew outbreaks caused by Plasmopara obducens throughout the Hawai'ian islands

    USDA-ARS?s Scientific Manuscript database

    Downy mildew of impatiens (Impatiens walleriana Hook.f.) was first reported from the continental U.S. in 2004. In 2011-2012, severe and widespread outbreaks across were documented across the U.S. mainland, resulting in considerable economic losses. On 05-May-2013, downy mildew disease symptoms wer...

  11. Real-time PCR and spore trap-based detection of the downy mildew pathogen, Peronospora effusa

    USDA-ARS?s Scientific Manuscript database

    Peronospora effusa is an obligate pathogen and the causal agent of downy mildew on spinach. The pathogen can be dispersed by splashing rain and wind, and may overwinter as oospores. Outbreaks of downy mildew on spinach are common in the cool climate of central coastal California, including the Sal...

  12. Epidemiology and population biology of Pseudoperonospora cubensis: a model system for management of downy mildews.

    PubMed

    Ojiambo, Peter S; Gent, David H; Quesada-Ocampo, Lina M; Hausbeck, Mary K; Holmes, Gerald J

    2015-01-01

    The resurgence of cucurbit downy mildew has dramatically influenced production of cucurbits and disease management systems at multiple scales. Long-distance dispersal is a fundamental aspect of epidemic development that influences the timing and extent of outbreaks of cucurbit downy mildew. The dispersal potential of Pseudoperonospora cubensis appears to be limited primarily by sporangia production in source fields and availability of susceptible hosts and less by sporangia survival during transport. Uncertainty remains regarding the role of locally produced inoculum in disease outbreaks, but evidence suggests multiple sources of primary inoculum could be important. Understanding pathogen diversity and population differentiation is a critical aspect of disease management and an active research area. Underpinning advances in our understanding of pathogen biology and disease management has been the research capacity and coordination of stakeholders, scientists, and extension personnel. Concepts and approaches developed in this pathosystem can guide future efforts when responding to incursions of new or reemerging downy mildew pathogens.

  13. Exposure and terrestrial ages of four Allan Hills Antarctic meteorites

    NASA Technical Reports Server (NTRS)

    Kirsten, T.; Ries, D.; Fireman, E. L.

    1978-01-01

    Terrestrial ages of meteorites are based on the amount of cosmic-ray-produced radioactivity in the sample and the number of observed falls that have similar cosmic-ray exposure histories. The cosmic-ray exposures are obtained from the stable noble gas isotopes. Noble gas isotopes are measured by high-sensitivity mass spectrometry. In the present study, the noble gas contents were measured in four Allan Hill meteorites (No. 5, No. 6, No. 7, and No. 8), whose C-14, Al-26, and Mn-53 radioactivities are known. These meteorites are of particular interest because they belong to a large assemblage of distinct meteorites that lie exposed on a small (110 sq km) area of ice near the Allan Hills.

  14. Carbon-14 ages of Allan Hills meteorites and ice

    NASA Technical Reports Server (NTRS)

    Fireman, E. L.; Norris, T.

    1982-01-01

    Allan Hills is a blue ice region of approximately 100 sq km area in Antarctica where many meteorites have been found exposed on the ice. The terrestrial ages of the Allan Hills meteorites, which are obtained from their cosmogenic nuclide abundances are important time markers which can reflect the history of ice movement to the site. The principal purpose in studying the terrestrial ages of ALHA meteorites is to locate samples of ancient ice and analyze their trapped gas contents. Attention is given to the C-14 and Ar-39 terrestrial ages of ALHA meteorites, and C-14 ages and trapped gas compositions in ice samples. On the basis of the obtained C-14 terrestrial ages, and Cl-36 and Al-26 results reported by others, it is concluded that most ALHA meteorites fell between 20,000 and 200,000 years ago.

  15. Degrees of Freedom for Allan Deviation Estimates of Multiple Clocks

    DTIC Science & Technology

    2016-04-01

    IEEE TRANSACTIONS ON ULTRASONICS , FERROELECTRICS, AND FREQUENCY CONTROL, VOL. 63, NO. 4, APRIL 2016 571 Degrees of Freedom for Allan Deviation... ULTRASONICS , FERROELECTRICS, AND FREQUENCY CONTROL, VOL. 63, NO. 4, APRIL 2016 The hat (ˆ) over the parameter denotes an estimated value. The single noise...TRANSACTIONS ON ULTRASONICS , FERROELECTRICS, AND FREQUENCY CONTROL, VOL. 63, NO. 4, APRIL 2016 Fig. 5. Mesh plot shows the relationship between Gamma, Beta, and

  16. The Third-Difference Approach to Modified Allan Variance

    NASA Technical Reports Server (NTRS)

    Greenhall, C. A.

    1995-01-01

    This study gives strategies for estimating the modified Allan variance (mvar) and formulas for computing the equivalent degrees of freedom (edf) of the estimators. A third-difference formulation of mvar leads to a tractable formula for edf in the presence of power-law phase noise. The effect of estimation stride on edf is tabulated. First-degree rational-function approximations for edf are derived.

  17. Measurement of Allan variance and phase noise at fractions of a millihertz

    NASA Technical Reports Server (NTRS)

    Conroy, Bruce L.; Le, Duc

    1990-01-01

    Although the measurement of Allan variance of oscillators is well documented, there is a need for a simplified system for finding the degradation of phase noise and Allan variance step-by-step through a system. This article describes an instrumentation system for simultaneous measurement of additive phase noise and degradation in Allan variance through a transmitter system. Also included are measurements of a 20-kW X-band transmitter showing the effect of adding a pass tube regulator.

  18. Allan variance of time series models for measurement data

    NASA Astrophysics Data System (ADS)

    Zhang, Nien Fan

    2008-10-01

    The uncertainty of the mean of autocorrelated measurements from a stationary process has been discussed in the literature. However, when the measurements are from a non-stationary process, how to assess their uncertainty remains unresolved. Allan variance or two-sample variance has been used in time and frequency metrology for more than three decades as a substitute for the classical variance to characterize the stability of clocks or frequency standards when the underlying process is a 1/f noise process. However, its applications are related only to the noise models characterized by the power law of the spectral density. In this paper, from the viewpoint of the time domain, we provide a statistical underpinning of the Allan variance for discrete stationary processes, random walk and long-memory processes such as the fractional difference processes including the noise models usually considered in time and frequency metrology. Results show that the Allan variance is a better measure of the process variation than the classical variance of the random walk and the non-stationary fractional difference processes including the 1/f noise.

  19. Relationship between Allan variances and Kalman Filter parameters

    NASA Technical Reports Server (NTRS)

    Vandierendonck, A. J.; Mcgraw, J. B.; Brown, R. G.

    1984-01-01

    A relationship was constructed between the Allan variance parameters (H sub z, H sub 1, H sub 0, H sub -1 and H sub -2) and a Kalman Filter model that would be used to estimate and predict clock phase, frequency and frequency drift. To start with the meaning of those Allan Variance parameters and how they are arrived at for a given frequency source is reviewed. Although a subset of these parameters is arrived at by measuring phase as a function of time rather than as a spectral density, they all represent phase noise spectral density coefficients, though not necessarily that of a rational spectral density. The phase noise spectral density is then transformed into a time domain covariance model which can then be used to derive the Kalman Filter model parameters. Simulation results of that covariance model are presented and compared to clock uncertainties predicted by Allan variance parameters. A two state Kalman Filter model is then derived and the significance of each state is explained.

  20. Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora.

    PubMed

    Sharma, Rahul; Xia, Xiaojuan; Cano, Liliana M; Evangelisti, Edouard; Kemen, Eric; Judelson, Howard; Oome, Stan; Sambles, Christine; van den Hoogen, D Johan; Kitner, Miloslav; Klein, Joël; Meijer, Harold J G; Spring, Otmar; Win, Joe; Zipper, Reinhard; Bode, Helge B; Govers, Francine; Kamoun, Sophien; Schornack, Sebastian; Studholme, David J; Van den Ackerveken, Guido; Thines, Marco

    2015-10-05

    Downy mildews are the most speciose group of oomycetes and affect crops of great economic importance. So far, there is only a single deeply-sequenced downy mildew genome available, from Hyaloperonospora arabidopsidis. Further genomic resources for downy mildews are required to study their evolution, including pathogenicity effector proteins, such as RxLR effectors. Plasmopara halstedii is a devastating pathogen of sunflower and a potential pathosystem model to study downy mildews, as several Avr-genes and R-genes have been predicted and unlike Arabidopsis downy mildew, large quantities of almost contamination-free material can be obtained easily. Here a high-quality draft genome of Plasmopara halstedii is reported and analysed with respect to various aspects, including genome organisation, secondary metabolism, effector proteins and comparative genomics with other sequenced oomycetes. Interestingly, the present analyses revealed further variation of the RxLR motif, suggesting an important role of the conservation of the dEER-motif. Orthology analyses revealed the conservation of 28 RxLR-like core effectors among Phytophthora species. Only six putative RxLR-like effectors were shared by the two sequenced downy mildews, highlighting the fast and largely independent evolution of two of the three major downy mildew lineages. This is seemingly supported by phylogenomic results, in which downy mildews did not appear to be monophyletic. The genome resource will be useful for developing markers for monitoring the pathogen population and might provide the basis for new approaches to fight Phytophthora and downy mildew pathogens by targeting core pathogenicity effectors.

  1. Heterothallism in Peronospora farinosa f.sp. chenopodii, the causal agent of downy mildew of quinoa (Chenopodium quinoa).

    PubMed

    Danielsen, S

    2001-01-01

    Heterothallism in Peronospora farinosa f.sp. chenopodii, the causal agent of downy mildew of quinoa (Chenopodium quinoa) is reported for the first time. Downy mildew is the most important disease of this crop in the Andean region. Eight single-lesion isolates from different regions in Peru and Bolivia were crossed in all possible combinations using a detached leaf assay, to determine the mating system of the downy mildew pathogen. The presence of two mating types, P1 and P2, was revealed showing that P. farinosa f.sp. chenopodii is heterothallic. It is suggested that frequent sexual reproduction is an important evolutionary force in this pathogen in South America.

  2. Process-based management approaches for salt desert shrublands dominated by downy brome

    USDA-ARS?s Scientific Manuscript database

    Downy brome grass (Bromus tectorum L.) invasion has severely altered key ecological processes such as disturbance regimes, soil nutrient cycling, community assembly, and successional pathways in semi-arid Great Basin salt desert shrublands. Restoring the structure and function of these severly alte...

  3. Effect of detergent on the quantification of grapevine downy mildew Sporangia from leaf discs

    USDA-ARS?s Scientific Manuscript database

    Grapevine downy mildew (DM), caused by the oomycete Plasmopara viticola (Berk. & Curt.) Berlese & de Toni, is a major disease, especially in humid viticultural areas. Development of resistant cultivars is an important objective for grapevine breeding. In order to establish a reliable and inexpensive...

  4. Downy mildew on coleus (Plectranthus scutellarioides) caused by Peronospora belbahrii sensu lato in Tennessee

    USDA-ARS?s Scientific Manuscript database

    Coleus (Plectranthus scutellarioides [syn. = Solenostemon scutellarioides]) is a popular ornamental plant in the mint family (Lamiaceae), prized for its colorful and showy foliage. In August 2015, disease symptoms typical of downy mildew were observed at two sites in Nashville, Tennessee: (i) at the...

  5. Soil engineering facilitates Downy brome (Bromus tectorum L.) growth - A case study

    USDA-ARS?s Scientific Manuscript database

    Some exotic plants are able to engineer new host soils and engender characteristics that potentially increase their growth. We hypothesized that this positive feedback may be a facet in the competitiveness of the exotic annual grass downy brome. Using rhizotrons in the greenhouse, we compared the gr...

  6. Association of RGA-SSCP markers with resistance to downy mildew and anthracnose in grapevines.

    PubMed

    Tantasawat, P A; Poolsawat, O; Prajongjai, T; Chaowiset, W; Tharapreuksapong, A

    2012-07-02

    Downy mildew (Plasmopara viticola) and anthracnose (Sphaceloma ampelinum) are two major diseases that severely affect most grapevine (Vitis vinifera) cultivars grown commercially in Thailand. Progress of conventional breeding programs of grapevine for improved resistance to these diseases can be speeded up by selection of molecular markers associated with resistance traits. We evaluated the association between 13 resistance gene analog (RGA)-single-strand conformation polymorphism (SSCP) markers with resistance to downy mildew and anthracnose in 71 segregating progenies of seven cross combinations between susceptible cultivars and resistant lines. F(1) hybrids from each cross were assessed for resistance to downy mildew and anthracnose (isolates Nk4-1 and Rc2-1) under laboratory conditions. Association of resistance traits with RGA-SSCP markers was evaluated using simple linear regression analysis. Three RGA-SSCP markers were found to be significantly correlated with anthracnose resistance, whereas significant correlation with downy mildew resistance was observed for only one RGA-SSCP marker. These results demonstrate the usefulness of RGA-SSCP markers. Four candidate markers with significant associations to resistance to these two major diseases of grapevine were identified. However, these putative associations between markers and resistance need to be verified with larger segregating populations before they can be used for marker-assisted selection.

  7. Spatial analysis and incidence-density relationships for downy mildew on hop

    USDA-ARS?s Scientific Manuscript database

    Sampling often can be expedited by noting only the presence of disease symptoms without quantifying the level of disease in what is termed “binomial sampling”. To this end, the spatial pattern of downy mildew on hop (Pseudoperonospora humuli) was characterized over four years to aid in deriving an ...

  8. QTL mapping of downy mildew resistance in PI 197088 and PI 330628 cucumbers

    USDA-ARS?s Scientific Manuscript database

    Downy mildew (DM, Pseudoperonospora cubensis) is a devastating fungal disease of cucumber worldwide. Several plant introduction lines have been identified with high resistance to the post-2004 new DM strain found in the U.S. However, the inheritance of DM resistance is still not well defined. Molecu...

  9. QTL mapping for downy mildew resistance in cucumber inbred line WI7120 (PI 330628)

    USDA-ARS?s Scientific Manuscript database

    Downy mildew (DM) is the most devastating fungal disease of cucumber worldwide. The molecular mechanism of DM resistance in cucumber is poorly understood, and use of marker-assisted breeding for DM resistance is not widely available. Here we reported QTL mapping of DM resistance with 243 F2:3 famili...

  10. QTL mapping for downy mildew resistance in WI7120B (PI 330628) cucumber

    USDA-ARS?s Scientific Manuscript database

    Background: Downy mildew (DM) is the most devastating fungal diseases of cucumber worldwide. Several plant introduction (PI) lines have been identified to be highly resistant to the post-2004 DM strain in the US including PI 197088 and PI 330628 (WI7120B). However, the genetic basis of resistance i...

  11. Genome sequence and architecture of the tobacco downy mildew pathogen, Peronospora tabacina

    USDA-ARS?s Scientific Manuscript database

    Peronospora tabacina is an obligate biotrophic oomycete that causes blue mold or downy mildew of tobacco (Nicotiana tabacum), an economically important disease occurring frequently in tobacco growing regions worldwide. We have sequenced and characterized the genomes of two P. tabacina isolates and m...

  12. Epidemiology and population biology of pseudoperonospora cubensis: a model system for management of downy mildews

    USDA-ARS?s Scientific Manuscript database

    The resurgence of cucurbit downy mildew has dramatically influenced production of cucurbits and disease management systems at multiple scales. Long-distance dispersal is a fundamental aspect of epidemic development that influences the timing and extent of disease outbreaks. Dispersal potential of th...

  13. Precision QTL mapping of downy mildew resistance in Hop (Humulus lupulus L.)

    USDA-ARS?s Scientific Manuscript database

    Hop Downy mildew (DM) is an obligate parasite causing severe losses in hop if not controlled. Resistance to this pathogen is a primary goal for hop breeding programs. The objective of this study was to identify QTLs linked to DM resistance. Next-generation-sequencing was performed on a mapping po...

  14. The ghost of outcrossing past in downy brome, an inbreeding annual grass

    Treesearch

    Susan E. Meyer; Sudeep Ghimire; Samuel Decker; Keith R. Merrill; Craig E. Coleman

    2013-01-01

    We investigated the frequency of outcrossing in downy brome (Bromus tectorum L.), a cleistogamous weedy annual grass, in both common garden and wild populations, using microsatellite and single nucleotide polymorphic (SNP) markers. In the common garden study, 25 lines with strongly contrasting genotypes were planted in close proximity. We fingerprinted 10 seed progeny...

  15. Basil Downy Mildew (Peronospora belbahrii): Discoveries and Challenges Relative to Its Control.

    PubMed

    Wyenandt, Christian A; Simon, James E; Pyne, Robert M; Homa, Kathryn; McGrath, Margaret T; Zhang, Shouan; Raid, Richard N; Ma, Li-Jun; Wick, Robert; Guo, Li; Madeiras, Angela

    2015-07-01

    Basil (Ocimum spp.) is one of the most economically important and widely grown herbs in the world. Basil downy mildew, caused by Peronospora belbahrii, has become an important disease in sweet basil (O. basilicum) production worldwide in the past decade. Global sweet basil production is at significant risk to basil downy mildew because of the lack of genetic resistance and the ability of the pathogen to be distributed on infested seed. Controlling the disease is challenging and consequently many crops have been lost. In the past few years, plant breeding efforts have been made to identify germplasm that can be used to introduce downy mildew resistance genes into commercial sweet basils while ensuring that resistant plants have the correct phenotype, aroma, and tastes needed for market acceptability. Fungicide efficacy studies have been conducted to evaluate current and newly developed conventional and organic fungicides for its management with limited success. This review explores the current efforts and progress being made in understanding basil downy mildew and its control.

  16. Polymorphic SSR markers for Plasmopara obducens (Peronosporaceae), the newly emergent downy mildew pathogen of Impatiens (Balsaminaceae)

    USDA-ARS?s Scientific Manuscript database

    Premise of the study: Microsatellite markers were developed for Plasmopara obducens, the causal agent of the newly emergent downy mildew disease of Impatiens walleriana. Methods and Results: A 151.2 Mb draft genome assembly was generated from P. obducens using Illumina technology and mined to identi...

  17. Genetic characterization of quantitative resistance to Bremia lactucae, the causal organism of lettuce downy mildew

    USDA-ARS?s Scientific Manuscript database

    Lettuce (Lactuca sativa) is one of the most valuable vegetable crops in the United States. Downy mildew (DM), caused by Bremia lactucae, is the most important foliar disease of lettuce worldwide, which decreases the quality of the marketable portion of the crop. The use of resistant varieties carryi...

  18. First report of downy mildew caused by Hyaloperonospora sp. on Iberis sempervirens in the United States

    USDA-ARS?s Scientific Manuscript database

    Iberis sempervirens (candytuft) is a herbaceous perennial in the Brassicaceae. It has evergreen foliage and fragrant, pure white flowers, and is a popular groundcover. During March 2016, downy mildew-like symptoms were observed on potted plants in a commercial greenhouse located in Baltimore Co. Mar...

  19. Assessing the vulnerability of sorghum converted lines to anthracnose and downy mildew infection

    USDA-ARS?s Scientific Manuscript database

    A total of 59 converted sorghum lines and six checks were evaluated for resistance to two foliar fungal diseases, anthracnose and downy mildew (SDM) in 2008 and 2009 growing seasons at the Texas A&M AgriLife Research Farm, College Station, Texas. In 2008, 23 lines exhibited resistance (35%), 29 sus...

  20. Is Pyrenophora semeniperda the cause of downy brome (Bromus tectorum) die-offs?

    Treesearch

    Owen W. Baughman; Susan E. Meyer

    2013-01-01

    Downy brome (cheatgrass) is a highly successful, exotic, winter annual invader in semi-arid western North America, forming near-monocultures across many landscapes. A frequent but poorly understood phenomenon in these heavily invaded areas is periodic 'die-off' or complete stand failure. The fungal pathogen Pyrenophora semeniperda is abundant in cheatgrass...

  1. Hybrid ANN-ES architecture for automatic target recognition

    NASA Astrophysics Data System (ADS)

    Teng, Chungte; Ligomenides, Panos A.

    1992-03-01

    Automatic target recognition can benefit from cooperation of artificial neural networks (ANNs) and expert systems (ESs). Bottom-up training and generalization properties of artificial neural networks, and top-down utilization of accumulated knowledge by expert system processors, can be combined to offer robust performance of the automatic target recognition models. In this paper, we propose a modular, flexible and expandable, hybrid architecture which provides cooperative, functional and operational interfaces between expert system and artificial neural networks facilities. In order to make the problem more specific, we apply this architecture to the Multline Optical Character Reader (MLOCR) system, which is being developed to sort the postal mail pieces automatically.

  2. ThêoH: a hybrid, high-confidence statistic that improves on the Allan deviation

    NASA Astrophysics Data System (ADS)

    Howe, D. A.

    2006-08-01

    'Theo1' (short terminology for 'theoretical variance #1') is derived based on \\psi_y^2(\\tau_s,\\tau) , a variance that separates the Allan variance's averaging time (τ) from its sampling interval (τs), also called 'stride', as applied to normalized fractional-frequency y(t). The τ-length average of y(t) is denoted {^\\tau}\\overline {y}(t) , and every permissible squared difference of {^\\tau}\\overline {y}(t) -values in \\psi_y^2(\\tau_s,\\tau) is averaged in mτ0 segments of y(t) to compute Theo1(m, τ0). Although biased relative to the Allan variance, Theo1(m, τ0) mimics all statistical properties of the Allan variance and works to very long stride. Its estimator \\widehat{Theo1}(\\tau_s) has substantially better confidence compared with the best Allan estimator \\hat\\sigma_y^2(\\tau_s) , called 'Avar'. To make an Allan-compatible statistic, a novel 'bias-removed' version of \\widehat{Theo1} variance, called ' \\widehat{TheoBR} ' variance, yields ThêoH variance ('H' to indicate high confidence and/or hybrid Allan and \\widehat{TheoBR} functions). ThêoH deviation combines the Allan deviation in short term and \\widehat{TheoBR} deviation in long term, reporting very long-term frequency stability 50% beyond that possible using the Allan deviation alone and with excellent confidence.

  3. Pragmatics: The State of the Art: An Online Interview with Keith Allan

    ERIC Educational Resources Information Center

    Allan, Keith; Salmani Nodoushan, Mohammad Ali

    2015-01-01

    This interview was conducted with Professor Keith Allan with the aim of providing a brief but informative summary of the state of the art of pragmatics. In providing answers to the interview questions, Professor Allan begins with a definition of pragmatics as it is practiced today, i.e., the study of the meanings of utterances with attention to…

  4. A Simple Algorithm for Approximating Confidence on the Modified Allan Variance and the Time Variance

    NASA Technical Reports Server (NTRS)

    Weiss, Marc A.; Greenhall, Charles A.

    1996-01-01

    An approximating algorithm for computing equvalent degrees of freedom of the Modified Allan Variance and its square root, the Modified Allan Deviation (MVAR and MDEV), and the Time Variance and Time Deviation (TVAR and TDEV) is presented, along with an algorithm for approximating the inverse chi-square distribution.

  5. A Simple Algorithm for Approximating Confidence on the Modified Allan Variance and the Time Variance

    NASA Technical Reports Server (NTRS)

    Weiss, Marc A.; Greenhall, Charles A.

    1996-01-01

    An approximating algorithm for computing equvalent degrees of freedom of the Modified Allan Variance and its square root, the Modified Allan Deviation (MVAR and MDEV), and the Time Variance and Time Deviation (TVAR and TDEV) is presented, along with an algorithm for approximating the inverse chi-square distribution.

  6. The dynamic Allan Variance IV: characterization of atomic clock anomalies.

    PubMed

    Galleani, Lorenzo; Tavella, Patrizia

    2015-05-01

    The number of applications where precise clocks play a key role is steadily increasing, satellite navigation being the main example. Precise clock anomalies are hence critical events, and their characterization is a fundamental problem. When an anomaly occurs, the clock stability changes with time, and this variation can be characterized with the dynamic Allan variance (DAVAR). We obtain the DAVAR for a series of common clock anomalies, namely, a sinusoidal term, a phase jump, a frequency jump, and a sudden change in the clock noise variance. These anomalies are particularly common in space clocks. Our analytic results clarify how the clock stability changes during these anomalies.

  7. Princess Marie Bonaparte, Edgar Allan Poe, and psychobiography.

    PubMed

    Warner, S L

    1991-01-01

    Princess Marie Bonaparte was a colorful yet mysterious member of Freud's inner circle of psychoanalysis. In analysis with Freud beginning in 1925 (she was then 45 years old), she became a lay analyst and writer of many papers and books. Her most ambitious task was a 700-page psychobiography of Edgar Allan Poe that was first published in French in 1933. She was fascinated by Poe's gothic stories--with the return to life of dead persons and the eerie, unexpected turns of events. Her fascination with Poe can be traced to the similarity of their early traumatic life experiences. Bonaparte had lost her mother a month after her birth. Poe's father deserted the family when Edgar was two years old, and his mother died of tuberculosis when he was three. Poe's stories helped him to accommodate to these early traumatic losses. Bonaparte vicariously shared in Poe's loss and the fantasies of the return of the deceased parent in his stories. She was sensitive and empathetic to Poe's inner world because her inner world was similar. The result of this psychological fit between Poe and Bonaparte was her psychobiography, The Life and Works of Edgar Allan Poe. It was a milestone in psychobiography but limited in its psychological scope by its strong emphasis on early childhood trauma. Nevertheless it proved Bonaparte a bona fide creative psychoanalyst and not a dilettante propped up by her friendship with Freud.

  8. Isolation and evaluation of proteolytic actinomycete isolates as novel inducers of pearl millet downy mildew disease protection

    PubMed Central

    Jogaiah, Sudisha; Kurjogi, Mahantesh; Govind, Sharathchandra Ramasandra; Huntrike, Shekar Shetty; Basappa, Vedamurthy Ankala; Tran, Lam-Son Phan

    2016-01-01

    Native endophytic actinomycetes isolated from pearl millet roots were examined for their efficacy to protect pearl millet against downy mildew. Nineteen of 39 isolates were found to be proteolytic, of which 7 strains could directly suppress the sporangium formation of Sclerospora graminicola, the pearl millet downy mildew pathogen. Thus, mycelial suspensions containing either spores or cell-free extract of these 7 isolates were used for seed-coating and -soaking treatments to test for their induction of downy mildew resistance. Results indicated that seed-coating overall provided better protection to downy mildew than seed-soaking. In both treatments, the tested isolates demonstrated differential abilities in downy mildew disease protection, with Streptomyces griseus SJ_UOM-07-09 and Streptosporangium roseum SJ_UOM-18-09 showing the highest protection rates. Additionally, the levels of disease protection conferred by the actinomycetes were just slightly lower than that of the systemic fungicide Apron, suggesting their effectiveness. Further studies revealed that the more rapid root colonization by SJ_UOM-18-09 resulted in faster and higher induced resistance in comparison with SJ_UOM-07-09 under greenhouse conditions, indicating that SJ_UOM-18-09 was superior than SJ_UOM-07-09 in inducing resistance. Results from this study provide comprehensive information on biocontrol functions of SJ_UOM- 18-09 with great potential to control downy mildew disease in pearl millet. PMID:27499196

  9. Effects of Heat Shock on Photosynthetic Properties, Antioxidant Enzyme Activity, and Downy Mildew of Cucumber (Cucumis sativus L.).

    PubMed

    Ding, Xiaotao; Jiang, Yuping; Hao, Ting; Jin, Haijun; Zhang, Hongmei; He, Lizhong; Zhou, Qiang; Huang, Danfeng; Hui, Dafeng; Yu, Jizhu

    2016-01-01

    Heat shock is considered an abiotic stress for plant growth, but the effects of heat shock on physiological responses of cucumber plant leaves with and without downy mildew disease are still not clear. In this study, cucumber seedlings were exposed to heat shock in greenhouses, and the responses of photosynthetic properties, carbohydrate metabolism, antioxidant enzyme activity, osmolytes, and disease severity index of leaves with or without the downy mildew disease were measured. Results showed that heat shock significantly decreased the net photosynthetic rate, actual photochemical efficiency, photochemical quenching coefficient, and starch content. Heat shock caused an increase in the stomatal conductance, transpiration rate, antioxidant enzyme activities, total soluble sugar content, sucrose content, soluble protein content and proline content for both healthy leaves and downy mildew infected leaves. These results demonstrate that heat shock activated the transpiration pathway to protect the photosystem from damage due to excess energy in cucumber leaves. Potential resistance mechanisms of plants exposed to heat stress may involve higher osmotic regulation capacity related to an increase of total accumulations of soluble sugar, proline and soluble protein, as well as higher antioxidant enzymes activity in stressed leaves. Heat shock reduced downy mildew disease severity index by more than 50%, and clearly alleviated downy mildew development in the greenhouses. These findings indicate that cucumber may have a complex physiological change to resist short-term heat shock, and suppress the development of the downy mildew disease.

  10. Effects of Heat Shock on Photosynthetic Properties, Antioxidant Enzyme Activity, and Downy Mildew of Cucumber (Cucumis sativus L.)

    PubMed Central

    Hao, Ting; Jin, Haijun; Zhang, Hongmei; He, Lizhong; Zhou, Qiang; Huang, Danfeng; Hui, Dafeng; Yu, Jizhu

    2016-01-01

    Heat shock is considered an abiotic stress for plant growth, but the effects of heat shock on physiological responses of cucumber plant leaves with and without downy mildew disease are still not clear. In this study, cucumber seedlings were exposed to heat shock in greenhouses, and the responses of photosynthetic properties, carbohydrate metabolism, antioxidant enzyme activity, osmolytes, and disease severity index of leaves with or without the downy mildew disease were measured. Results showed that heat shock significantly decreased the net photosynthetic rate, actual photochemical efficiency, photochemical quenching coefficient, and starch content. Heat shock caused an increase in the stomatal conductance, transpiration rate, antioxidant enzyme activities, total soluble sugar content, sucrose content, soluble protein content and proline content for both healthy leaves and downy mildew infected leaves. These results demonstrate that heat shock activated the transpiration pathway to protect the photosystem from damage due to excess energy in cucumber leaves. Potential resistance mechanisms of plants exposed to heat stress may involve higher osmotic regulation capacity related to an increase of total accumulations of soluble sugar, proline and soluble protein, as well as higher antioxidant enzymes activity in stressed leaves. Heat shock reduced downy mildew disease severity index by more than 50%, and clearly alleviated downy mildew development in the greenhouses. These findings indicate that cucumber may have a complex physiological change to resist short-term heat shock, and suppress the development of the downy mildew disease. PMID:27065102

  11. Isolation and evaluation of proteolytic actinomycete isolates as novel inducers of pearl millet downy mildew disease protection.

    PubMed

    Jogaiah, Sudisha; Kurjogi, Mahantesh; Govind, Sharathchandra Ramasandra; Huntrike, Shekar Shetty; Basappa, Vedamurthy Ankala; Tran, Lam-Son Phan

    2016-08-08

    Native endophytic actinomycetes isolated from pearl millet roots were examined for their efficacy to protect pearl millet against downy mildew. Nineteen of 39 isolates were found to be proteolytic, of which 7 strains could directly suppress the sporangium formation of Sclerospora graminicola, the pearl millet downy mildew pathogen. Thus, mycelial suspensions containing either spores or cell-free extract of these 7 isolates were used for seed-coating and -soaking treatments to test for their induction of downy mildew resistance. Results indicated that seed-coating overall provided better protection to downy mildew than seed-soaking. In both treatments, the tested isolates demonstrated differential abilities in downy mildew disease protection, with Streptomyces griseus SJ_UOM-07-09 and Streptosporangium roseum SJ_UOM-18-09 showing the highest protection rates. Additionally, the levels of disease protection conferred by the actinomycetes were just slightly lower than that of the systemic fungicide Apron, suggesting their effectiveness. Further studies revealed that the more rapid root colonization by SJ_UOM-18-09 resulted in faster and higher induced resistance in comparison with SJ_UOM-07-09 under greenhouse conditions, indicating that SJ_UOM-18-09 was superior than SJ_UOM-07-09 in inducing resistance. Results from this study provide comprehensive information on biocontrol functions of SJ_UOM- 18-09 with great potential to control downy mildew disease in pearl millet.

  12. Spatiotemporal spread of cucurbit downy mildew in the eastern United States.

    PubMed

    Ojiambo, P S; Holmes, G J

    2011-04-01

    The dynamics of cucurbit downy mildew, caused by Pseudoperonospora cubensis, in the eastern United States in 2008 and 2009 were investigated based on disease records collected in 24 states as part of the Cucurbit downy mildew ipmPIPE monitoring program. The mean season-long rate of temporal disease progress across the 2 years was 1.4 new cases per day. Although cucurbit downy mildew was detected in mid-February and early March in southern Florida, the disease progressed slowly during the spring and early summer and did not enter its exponential phase until mid-June. The median nearest-neighbor distance of spread of new disease cases was ≈110 km in both years, with ≈15% of the distances being >240 km. Considering disease epidemics on all cucurbits, the epidemic expanded at a rate of 9.2 and 10.5 km per day in 2008 and 2009, respectively. These rates of spatial spread are at the lower range of those reported for the annual spread of tobacco blue mold in the southeastern United States, a disease that is also aerially dispersed over long distances. These results suggest that regional spread of cucurbit downy mildew may be limited by opportunities for establishment in the first half of the year, when fewer cucurbit hosts are available for infection. The O-ring statistic was used to determine the spatial pattern of cucurbit downy mildew outbreaks using complete spatial randomness as the null model for hypothesis testing. Disease outbreaks in both years were spatially aggregated and the extent of spatial dependence was up to 1,000 km. Results from the spatial analysis suggests that disease outbreaks in the Great Lakes and mid-Atlantic regions may be due to the spread of P. cubensis sporangia from outbreaks of the disease near the Georgia/South Carolina/North Carolina border rather than from overwintering sites in southern Florida. Space-time point pattern analysis indicated strong (P < 0.001) evidence for a space-time interaction and a space-time risk window of ≈3

  13. DOLLY ANN ROADLESS AREA, VIRGINIA.

    USGS Publications Warehouse

    Lesure, Frank G.; Jones, Jay G.

    1984-01-01

    Mineral-resource surveys indicate that much of the Dolly Ann Roadless Area, in the George Washington National Forest, Alleghany County, Virginia, has substantiated iron resource potential. Inferred low-grade iron resources occur in folded sedimentary rocks of Paleozoic age. The area has an estimated 540 million long tons of contained iron in hematitic sandstone and 700,000 long tons contained iron in deposits of sandy Limonite. Other mineral resources include various rocks suitable for crushed rock, quartzite suitable for high-silica uses, limestone suitable for agricultural uses, and clay and shale suitable for structural clay products, all of which can be readily obtained outside the wilderness. A potential for natural gas and geothermal energy may exist but cannot be quantified from present knowledge.

  14. Seeds of a Soldier: The True Story of Edgar Allan Poe - The Sergeant Major

    DTIC Science & Technology

    2003-01-01

    2003 2. REPORT TYPE 3. DATES COVERED 00-00-2003 to 00-00-2003 4. TITLE AND SUBTITLE Seeds of a Soldier. The true story of Edgar Allan Poe - the...Std Z39-18 Army Space Journal Fall 200360 By Michael L. Howard Seeds of a Soldier The true story of Edgar Allan Poe — the Sergeant Major...the Managing Editor via email to richard.burks@arspace.army.mil dgar Allan Poe wore U.S. Army sergeant major stripes. Using the name Edgar A. Perry

  15. Allan Deviation Plot as a Tool for Quartz-Enhanced Photoacoustic Sensors Noise Analysis.

    PubMed

    Giglio, Marilena; Patimisco, Pietro; Sampaolo, Angelo; Scamarcio, Gaetano; Tittel, Frank K; Spagnolo, Vincenzo

    2016-04-01

    We report here on the use of the Allan deviation plot to analyze the long-term stability of a quartz-enhanced photoacoustic (QEPAS) gas sensor. The Allan plot provides information about the optimum averaging time for the QEPAS signal and allows the prediction of its ultimate detection limit. The Allan deviation can also be used to determine the main sources of noise coming from the individual components of the sensor. Quartz tuning fork thermal noise dominates for integration times up to 275 s, whereas at longer averaging times, the main contribution to the sensor noise originates from laser power instabilities.

  16. Rapid staining method to detect and identify downy mildew (Peronospora belbahrii) in basil1

    PubMed Central

    Koroch, Adolfina R.; Villani, Thomas S.; Pyne, Robert M.; Simon, James E.

    2013-01-01

    • Premise of the study: Demand for fresh-market sweet basil continues to increase, but in 2009 a new pathogen emerged, threatening commercial field/greenhouse production and leading to high crop losses. This study describes a simple and effective staining method for rapid microscopic detection of basil downy mildew (Peronospora belbahrii) from leaves of basil (Ocimum basilicum). • Methods and Results: Fresh leaf sections infected with P. belbahrii were placed on a microscope slide, cleared with Visikol™, and stained with iodine solution followed by one drop of 70% sulfuric acid. Cell walls of the pathogen were stained with a distinct coloration, providing a high-contrast image between the pathogen and plant. • Conclusions: This new staining method can be used successfully to identify downy mildew in basil, which then can significantly reduce its spread if identified early, coupled with mitigation strategies. This technique can facilitate the control of the disease, without expensive and specialized equipment. PMID:25202569

  17. Spatial analysis of lettuce downy mildew using geostatistics and geographic information systems.

    PubMed

    Wu, B M; van Bruggen, A H; Subbarao, K V; Pennings, G G

    2001-02-01

    ABSTRACT The epidemiology of lettuce downy mildew has been investigated extensively in coastal California. However, the spatial patterns of the disease and the distance that Bremia lactucae spores can be transported have not been determined. During 1995 to 1998, we conducted several field- and valley-scale surveys to determine spatial patterns of this disease in the Salinas valley. Geostatistical analyses of the survey data at both scales showed that the influence range of downy mildew incidence at one location on incidence at other locations was between 80 and 3,000 m. A linear relationship was detected between semivariance and lag distance at the field scale, although no single statistical model could fit the semi-variograms at the valley scale. Spatial interpolation by the inverse distance weighting method with a power of 2 resulted in plausible estimates of incidence throughout the valley. Cluster analysis in geographic information systems on the interpolated disease incidence from different dates demonstrated that the Salinas valley could be divided into two areas, north and south of Salinas City, with high and low disease pressure, respectively. Seasonal and spatial trends along the valley suggested that the distinction between the downy mildew conducive and nonconducive areas might be determined by environmental factors.

  18. Chemical control of downy mildew on lettuce and basil under greenhouse.

    PubMed

    Gullino, M L; Gilardi, G; Garibaldi, A

    2009-01-01

    Eight experimental trials were carried out during 2007 and 2008 to evaluate the efficacy of different fungicides against downy mildew of lettuce (Bremia lactucae) and basil (Peronospora belbahrii) under greenhouse conditions, at temperatures ranging from 19 to 24 degrees C. The mixture fluopicolide (fungicide belonging to the + propamocarb hydrochloride (fungicide belonging to the new chemical class of acyl-picolides) was compared with metalaxyl m + copper, zoxamide + mancozeb, iprovalicarb + Cu, fenamidone + fosetyl-Al and azoxystrobin. Two treatments were carried out at 8-12 day interval on lettuce and basil. The artificial inoculation of B. lactucae on lettuce (cv Cobham Green) and P. belbahrii. on basil (cv Genovese gigante) was carried out by using 1 x 10(5) CFU/ml 24 h after the first treatment. In the presence of a medium-high disease severity, all fungicides tested in these trials were effective against downy mildew on lettuce and basil as the other fungicides already available. The importance of the availability of a number of different chemicals to control downy mildews is discussed.

  19. Daytime Solar Heating Controls Downy Mildew Peronospora belbahrii in Sweet Basil

    PubMed Central

    Cohen, Yigal; Rubin, Avia E.

    2015-01-01

    The biotrophic oomycete Peronospora belbahrii causes a devastating downy mildew disease in sweet basil. Due to the lack of resistant cultivars current control measures rely heavily on fungicides. However, resistance to fungicides and strict regulation on their deployment greatly restrict their use. Here we report on a ‘green’ method to control this disease. Growth chamber studies showed that P. belbahrii could hardly withstand exposure to high temperatures; exposure of spores, infected leaves, or infected plants to 35-45°C for 6-9 hours suppressed its survival. Therefore, daytime solar heating was employed in the field to control the downy mildew disease it causes in basil. Covering growth houses of sweet basil already infected with downy mildew with transparent infra-red-impermeable, transparent polyethylene sheets raised the daily maximal temperature during sunny hours by 11-22°C reaching 40-58°C (greenhouse effect). Such coverage, applied for a few hours during 1-3 consecutive days, had a detrimental effect on the survival of P. belbahrii: killing the pathogen and/or suppressing disease progress while enhancing growth of the host basil plants. PMID:25992649

  20. Daytime Solar Heating Controls Downy Mildew Peronospora belbahrii in Sweet Basil.

    PubMed

    Cohen, Yigal; Rubin, Avia E

    2015-01-01

    The biotrophic oomycete Peronospora belbahrii causes a devastating downy mildew disease in sweet basil. Due to the lack of resistant cultivars current control measures rely heavily on fungicides. However, resistance to fungicides and strict regulation on their deployment greatly restrict their use. Here we report on a 'green' method to control this disease. Growth chamber studies showed that P. belbahrii could hardly withstand exposure to high temperatures; exposure of spores, infected leaves, or infected plants to 35-45 °C for 6-9 hours suppressed its survival. Therefore, daytime solar heating was employed in the field to control the downy mildew disease it causes in basil. Covering growth houses of sweet basil already infected with downy mildew with transparent infra-red-impermeable, transparent polyethylene sheets raised the daily maximal temperature during sunny hours by 11-22 °C reaching 40-58 °C (greenhouse effect). Such coverage, applied for a few hours during 1-3 consecutive days, had a detrimental effect on the survival of P. belbahrii: killing the pathogen and/or suppressing disease progress while enhancing growth of the host basil plants.

  1. ACC deaminase-containing plant growth-promoting rhizobacteria protect Papaver somniferum from downy mildew.

    PubMed

    Barnawal, D; Pandey, S S; Bharti, N; Pandey, A; Ray, T; Singh, S; Chanotiya, C S; Kalra, A

    2017-05-01

    The aim of this study was to determine whether ACC (1-aminocyclopropane-1-carboxylic acid) deaminase-containing bacterial treatments could enhance the tolerance of poppy (Papaver somniferum L.) plants against biotic stress of downy mildew caused by Peronospora sp. Three different genotypes of P. somniferum, that is, Sampada, J-16 and I-14 were included in the experiment. The ACC deaminase-containing bacteria Pseudomonas putida (WPTe) reduced the downy mildew disease severity and significantly improved the growth and yield of P. somniferum plants. The chlorophyll content, photosynthetic rate, stomatal conductance and transpiration rate were modulated upon WPTe treatments in the poppy plants. We observed reduced synthesis of ethylene precursor (ACC) and abscisic acid (ABA), and enhanced production of indole acetic acid (IAA) in P. somniferum plants upon WPTe treatments. Moreover, WPTe treatment reduced proline and lipid peroxidation in plant leaves. These results highlight that the ACC deaminase-containing plant growth-promoting rhizobacteria (PGPR) enhance the tolerance of P. somniferum plant against downy mildew. ACC deaminase-containing PGPR may be used against phytopathogens which apart from protecting the plants from the disease could also be useful in reducing ethylene-induced damages in the event of abiotic stresses. © 2017 The Society for Applied Microbiology.

  2. Seizures in the life and works of Edgar Allan Poe.

    PubMed

    Bazil, C W

    1999-06-01

    Edgar Allan Poe, one of the most celebrated of American storytellers, lived through and wrote descriptions of episodic unconsciousness, confusion, and paranoia. These symptoms have been attributed to alcohol or drug abuse but also could represent complex partial seizures, prolonged postictal states, or postictal psychosis. Complex partial seizures were not well described in Poe's time, which could explain a misdiagnosis. Alternatively, he may have suffered from complex partial epilepsy that was complicated or caused by substance abuse. Even today, persons who have epilepsy are mistaken for substance abusers and occasionally are arrested during postictal confusional states. Poe was able to use creative genius and experiences from illness to create memorable tales and poignant poems.

  3. Petrogenetic relationship between Allan Hills 77005 and other achondrites

    NASA Technical Reports Server (NTRS)

    Mcsween, H. Y., Jr.; Taylor, L. A.; Stolper, E. M.; Muntean, R. A.; Okelley, G. D.; Eldridge, J. S.; Biswas, S.; Ngo, H. T.; Lipschutz, M. E.

    1979-01-01

    The paper presents chemical and petrologic data relating the Allan Hills (ALHA) 77005 achondrite from Antarctica and explores their petrogenetic relationship with the shergottites. Petrologic similarities with the latter in terms of mineralogy, oxidation state, inferred source region composition, and shock ages suggest a genetic relationship, also indicated by volatile to involatile element ratios and abundances of other trace elements. ALHA 77005 may be a cumulate crystallized from a liquid parental to materials from which the shergottites crystallized or a sample of peridotite from which shergottite parent liquids were derived. Chemical similarities with terrestrial ultramafic rocks suggest that it provides an additional sample of the only other solar system body with basalt source origins chemically similar to the upper earth mantle.

  4. Chemical characterization of a unique chondrite - Allan Hills 85085

    NASA Technical Reports Server (NTRS)

    Gosselin, David C.; Laul, J. C.

    1990-01-01

    Allan Hills 85085 is a new and very important addition to the growing list of unique carbonaceous chondrites because of its unique chemical and mineralogical properties. This chemical study provides more precise data on the major, minor, and trace element characteristics of ALH85085. ALH85085 has compositional, petrological, and isotopic affinities to AL Rais and Renazzo, and to Bencubbin-Weatherford. The similarities to Al Rais and Renazzo suggest similar formation locations and thermal processing, possibly in the vicinity of CI chondrites. Petrologic, compositional and isotopic studies indicate that the components that control the abundance of the various refractory and volatile elements were not allowed to equilibrate with the nebula as conditions changed, explaining the inconsistencies in the classification of these meteorites using known taxonomic parameters.

  5. A new kind of primitive chondrite, Allan Hills 85085

    NASA Technical Reports Server (NTRS)

    Scott, Edward R. D.

    1988-01-01

    Allan Hills (ALH) 85085, a chemically and mineralogically unique chondrite whose components have suffered little metamorphism or alteration, is discussed. It is found that ALH 85085 has 4 wt pct chondrules (mean diameter 16 microns), 36 wt pct Fe, Ni, 56 wt pct lithic and mineral silicate fragments, and 2 wt pct trolite. It is suggested that, with the exception of matrix lumps, the components of ALH 85085 formed and accreted in the solar nebula. It is shown that ALH 85085 does not belong to any of the nine chondrite groups and is very different from Kakangari. Similarities between ALH 85085 and Bencubbin and Weatherford suggest that the latter two primitive meteorites may be chondrites with high metal abundances and very large, partly fragmented chondrules.

  6. The History of Allan Hills 84001 Revised: Multiple Shock Events

    NASA Technical Reports Server (NTRS)

    Treiman, Allan H.

    1998-01-01

    The geologic history of Martian meteorite Allan Hills (ALH) 84001 is more complex than previously recognized, with evidence for four or five crater-forming impacts onto Mars. This history of repeated deformation and shock metamorphism appears to weaken some arguments that have been offered for and against the hypothesis of ancient Martian life in ALH 84001. Allan Hills 84001 formed originally from basaltic magma. Its first impact event (I1) is inferred from the deformation (D1) that produced the granular-textured bands ("crush zones") that transect the original igneous fabric. Deformation D1 is characterized by intense shear and may represent excavation or rebound flow of rock beneath a large impact crater. An intense thermal metamorphism followed D1 and may be related to it. The next impact (I2) produced fractures, (Fr2) in which carbonate "pancakes" were deposited and produced feldspathic glass from some of the igneous feldspars and silica. After I2, carbonate pancakes and globules were deposited in Fr2 fractures and replaced feldspathic glass and possibly crystalline silicates. Next, feldspars, feldspathic glass, and possibly some carbonates were mobilized and melted in the third impact (I3). Microfaulting, intense fracturing, and shear are also associated with 13. In the fourth impact (I4), the rock was fractured and deformed without significant heating, which permitted remnant magnetization directions to vary across fracture surfaces. Finally, ALH 84001 was ejected from Mars in event I5, which could be identical to I4. This history of multiple impacts is consistent with the photogeology of the Martian highlands and may help resolve some apparent contradictions among recent results on ALH 84001. For example, the submicron rounded magnetite grains in the carbonate globules could be contemporaneous with carbonate deposition, whereas the elongate magnetite grains, epitaxial on carbonates, could be ascribed to vapor-phase deposition during I3.

  7. The history of Allan Hills 84001 revised: multiple shock events.

    PubMed

    Treiman, A H

    1998-07-01

    The geologic history of Martian meteorite Allan Hills (ALH) 84001 is more complex than previously recognized, with evidence for four or five crater-forming impacts onto Mars. This history of repeated deformation and shock metamorphism appears to weaken some arguments that have been offered for and against the hypothesis of ancient Martian life in ALH 84001. Allan Hills 84001 formed originally from basaltic magma. Its first impact event (I1) is inferred from the deformation (D1) that produced the granular-textured bands ("crush zones") that transect the original igneous fabric. Deformation D1 is characterized by intense shear and may represent excavation or rebound flow of rock beneath a large impact crater. An intense thermal metamorphism followed D1 and may be related to it. The next impact (I2) produced fractures, (Fr2) in which carbonate "pancakes" were deposited and produced feldspathic glass from some of the igneous feldspars and silica. After I2, carbonate pancakes and globules were deposited in Fr2 fractures and replaced feldspathic glass and possibly crystalline silicates. Next, feldspars, feldspathic glass, and possibly some carbonates were mobilized and melted in the third impact (I3). Microfaulting, intense fracturing, and shear are also associated with I3. In the fourth impact (I4), the rock was fractured and deformed without significant heating, which permitted remnant magnetization directions to vary across fracture surfaces. Finally, ALH 84001 was ejected from Mars in event I5, which could be identical to I4. This history of multiple impacts is consistent with the photogeology of the Martian highlands and may help resolve some apparent contradictions among recent results on ALH 84001. For example, the submicron rounded magnetite grains in the carbonate globules could be contemporaneous with carbonate deposition, whereas the elongate magnetite grains, epitaxial on carbonates, could be ascribed to vapor-phase deposition during I3.

  8. The History of Allan Hills 84001 Revised: Multiple Shock Events

    NASA Technical Reports Server (NTRS)

    Treiman, Allan H.

    1998-01-01

    The geologic history of Martian meteorite Allan Hills (ALH) 84001 is more complex than previously recognized, with evidence for four or five crater-forming impacts onto Mars. This history of repeated deformation and shock metamorphism appears to weaken some arguments that have been offered for and against the hypothesis of ancient Martian life in ALH 84001. Allan Hills 84001 formed originally from basaltic magma. Its first impact event (I1) is inferred from the deformation (D1) that produced the granular-textured bands ("crush zones") that transect the original igneous fabric. Deformation D1 is characterized by intense shear and may represent excavation or rebound flow of rock beneath a large impact crater. An intense thermal metamorphism followed D1 and may be related to it. The next impact (I2) produced fractures, (Fr2) in which carbonate "pancakes" were deposited and produced feldspathic glass from some of the igneous feldspars and silica. After I2, carbonate pancakes and globules were deposited in Fr2 fractures and replaced feldspathic glass and possibly crystalline silicates. Next, feldspars, feldspathic glass, and possibly some carbonates were mobilized and melted in the third impact (I3). Microfaulting, intense fracturing, and shear are also associated with 13. In the fourth impact (I4), the rock was fractured and deformed without significant heating, which permitted remnant magnetization directions to vary across fracture surfaces. Finally, ALH 84001 was ejected from Mars in event I5, which could be identical to I4. This history of multiple impacts is consistent with the photogeology of the Martian highlands and may help resolve some apparent contradictions among recent results on ALH 84001. For example, the submicron rounded magnetite grains in the carbonate globules could be contemporaneous with carbonate deposition, whereas the elongate magnetite grains, epitaxial on carbonates, could be ascribed to vapor-phase deposition during I3.

  9. Exploring Thermal Signatures in the Experimentally Heated CM Carbonaceous Chondrite Allan Hills 83100

    NASA Astrophysics Data System (ADS)

    Lindgren, P.; Andreassen, A. M.; Lee, M. R.; Sparkes, R.; Greenwood, R. C.; Franchi, I. A.

    2016-08-01

    We have examined the effect of experimental heating on water/hydroxyl content, carbon structure, O-isotope signature, and sulphide and carbonate microstructure in the highly aqueously altered meteorite Allan Hills 83100.

  10. ANNs pinpoint underground distribution faults

    SciTech Connect

    Glinkowski, M.T.; Wang, N.C.

    1995-10-01

    Many offline fault location techniques in power distribution circuits involve patrolling along the lines or cables. In overhead distribution lines, most of the failures can be located quickly by visual inspection without the aid of special equipment. However, locating a fault in underground cable systems is more difficult. It involves additional equipment (e.g., thumpers, radars, etc.) to transform the invisibility of the cable into other forms of signals, such as acoustic sound and electromagnetic pulses. Trained operators must carry the equipment above the ground, follow the path of the signal, and draw lines on their maps in order to locate the fault. Sometimes, even smelling the burnt cable faults is a way of detecting the problem. These techniques are time consuming, not always reliable, and, as in the case of high-voltage dc thumpers, can cause additional damage to the healthy parts of the cable circuit. Online fault location in power networks that involve interconnected lines (cables) and multiterminal sources continues receiving great attention, with limited success in techniques that would provide simple and practical solutions. This article features a new online fault location technique that: uses the pattern recognition feature of artificial neural networks (ANNs); utilizes new capabilities of modern protective relaying hardware. The output of the neural network can be graphically displayed as a simple three-dimensional (3-D) chart that can provide an operator with an instantaneous indication of the location of the fault.

  11. Allan-Herndon-Dudley syndrome with unusual profound sensorineural hearing loss.

    PubMed

    Gagliardi, Lucia; Nataren, Nathalie; Feng, Jinghua; Schreiber, Andreas W; Hahn, Christopher N; Conwell, Louise S; Coman, David; Scott, Hamish S

    2015-08-01

    The Allan-Herndon-Dudley syndrome is caused by mutations in the thyroid hormone transporter, Monocarboxylate transporter 8 (MCT8). It is characterized by profound intellectual disability and abnormal thyroid function. We report on a patient with Allan-Herndon-Dudley syndrome (AHDS) with profound sensorineural hearing loss which is not usually a feature of AHDS and which may have been due to a coexisting nonsense mutation in Microphthalmia-associated transcription factor (MITF).

  12. Genetics and mapping of a novel downy mildew resistance gene, Pl18, introgressed from wild Helianthus argophyllus into cultivated sunflower (Helianthus annuus L.)

    USDA-ARS?s Scientific Manuscript database

    Sunflower downy mildew is considered to be the most destructive foliar disease that has spread to every major sunflower-growing country of the world, except Australia. A new dominant downy mildew resistance gene (Pl18) transferred from wild Helianthus argophyllus (PI 494573) into cultivated sunflowe...

  13. On the application of Allan variance method for Ring Laser Gyro performance characterization

    SciTech Connect

    Ng, L.C.

    1993-10-15

    This report describes the method of Allan variance and its application to the characterization of a Ring Laser Gyro`s (RLG) performance. Allan variance, a time domain analysis technique, is an accepted IEEE standard for gyro specifications. The method was initially developed by David Allan of the National Bureau of Standards to quantify the error statistics of a Cesium beam frequency standard employed as the US Frequency Standards in 1960`s. The method can, in general, be applied to analyze the error characteristics of any precision measurement instrument. The key attribute of the method is that it allows for a finer, easier characterization and identification of error sources and their contribution to the overall noise statistics. This report presents an overview of the method, explains the relationship between Allan variance and power spectral density distribution of underlying noise sources, describes the batch and recursive implementation approaches, validates the Allan variance computation with a simulation model, and illustrates the Allan variance method using data collected from several Honeywell LIMU units.

  14. Simple sequence repeat markers useful for sorghum downy mildew (Peronosclerospora sorghi) and related species

    PubMed Central

    Perumal, Ramasamy; Nimmakayala, Padmavathi; Erattaimuthu, Saradha R; No, Eun-Gyu; Reddy, Umesh K; Prom, Louis K; Odvody, Gary N; Luster, Douglas G; Magill, Clint W

    2008-01-01

    Background A recent outbreak of sorghum downy mildew in Texas has led to the discovery of both metalaxyl resistance and a new pathotype in the causal organism, Peronosclerospora sorghi. These observations and the difficulty in resolving among phylogenetically related downy mildew pathogens dramatically point out the need for simply scored markers in order to differentiate among isolates and species, and to study the population structure within these obligate oomycetes. Here we present the initial results from the use of a biotin capture method to discover, clone and develop PCR primers that permit the use of simple sequence repeats (microsatellites) to detect differences at the DNA level. Results Among the 55 primers pairs designed from clones from pathotype 3 of P. sorghi, 36 flanked microsatellite loci containing simple repeats, including 28 (55%) with dinucleotide repeats and 6 (11%) with trinucleotide repeats. A total of 22 microsatellites with CA/AC or GT/TG repeats were the most abundant (40%) and GA/AG or CT/TC types contribute 15% in our collection. When used to amplify DNA from 19 isolates from P. sorghi, as well as from 5 related species that cause downy mildew on other hosts, the number of different bands detected for each SSR primer pair using a LI-COR- DNA Analyzer ranged from two to eight. Successful cross-amplification for 12 primer pairs studied in detail using DNA from downy mildews that attack maize (P. maydis & P. philippinensis), sugar cane (P. sacchari), pearl millet (Sclerospora graminicola) and rose (Peronospora sparsa) indicate that the flanking regions are conserved in all these species. A total of 15 SSR amplicons unique to P. philippinensis (one of the potential threats to US maize production) were detected, and these have potential for development of diagnostic tests. A total of 260 alleles were obtained using 54 microsatellites primer combinations, with an average of 4.8 polymorphic markers per SSR across 34 Peronosclerospora

  15. Radial forcing and Edgar Allan Poe's lengthening pendulum

    NASA Astrophysics Data System (ADS)

    McMillan, Matthew; Blasing, David; Whitney, Heather M.

    2013-09-01

    Inspired by Edgar Allan Poe's The Pit and the Pendulum, we investigate a radially driven, lengthening pendulum. We first show that increasing the length of an undriven pendulum at a uniform rate does not amplify the oscillations in a manner consistent with the behavior of the scythe in Poe's story. We discuss parametric amplification and the transfer of energy (through the parameter of the pendulum's length) to the oscillating part of the system. In this manner, radial driving can easily and intuitively be understood, and the fundamental concept applied in many other areas. We propose and show by a numerical model that appropriately timed radial forcing can increase the oscillation amplitude in a manner consistent with Poe's story. Our analysis contributes a computational exploration of the complex harmonic motion that can result from radially driving a pendulum and sheds light on a mechanism by which oscillations can be amplified parametrically. These insights should prove especially valuable in the undergraduate physics classroom, where investigations into pendulums and oscillations are commonplace.

  16. Allan V. Cox: AGU President 1978”1980

    NASA Astrophysics Data System (ADS)

    Richman, Barbara T.

    When Allan V. Cox was presented AGU's John Adam Fleming Medal in 1969, John Verhoogen described Cox's work as “characterized by painstaking care, proper attention to and use of statistics, and great insight.” Those same thoughts were echoed on February 3, 1987, during the memorial service for Cox, who died in a bicycling accident on January 27. The Stanford Memorial Church was crowded with colleagues, students, and friends.The Fleming Medal was presented to Cox in recognition of his studies on the fluctuation of the geomagnetic field. These studies helped to confirm theories of continental drift and seafloor spreading. The medal is awarded annually by AGU for original research and technical leadership in geomagnetism, atmospheric electricity, aeronomy, and related sciences. In addition to the Fleming Medal, Cox received the Antarctic Service Medal in 1970, the Vetlesen Prize in 1971, and the Arthur L. Day Prize of the National Academy of Sciences in 1984. He was a Fellow of AGU and a member of the National Academy of Sciences.

  17. Classification of the Allan Hills A77307 meteorite

    NASA Technical Reports Server (NTRS)

    Sears, D. W. G.; Ross, M.

    1983-01-01

    Thermoluminescence (TL) measurements on Allan Hills A77307 (AH), a carbonaceous chondrite found in Antarctica, are compared with those on other chondrite and applied to its classification. Two lithologically different 250-mg samples were ground, freed of magnetic material, and ground again to pass a 100-micron sieve. Aliquots of 4 mg were heated to 500 C, exposed to beta radiation from a Sr-90 source, and heated at a rate of 7.3 C/sec in N2. TL was measured with a photomultiplier tube fitted with thermal and blue filters. Glow curves for AH and for seven other, established CO-type chondrites area presented, all exhibiting two major peaks of TL sensitivity. The peaks for the seven CO-type chondrites are found at 91 + or - 7 C and at 203 + or - 11 C; those for AH at 170 + or - 17 C and at approximately 250 C. This difference is considered significant and not due to random fluctuation or a typical sampling. From this comparison and from consideration of the weathering, preterrestrial-alteration, petrological and compositional evidence on AH, it is concluded that AH is a unique chondrite, possessing both similarities to and differences from the CO class.

  18. Using radar data to forecast the epidemiology of grapevine downy mildew (Plasmopora viticula)

    NASA Astrophysics Data System (ADS)

    Cicogna, A.; Dietrich, S.

    2003-04-01

    The grapevine downy mildew (Plasmopara vitucula) represents the most important disease of the grapevine in Friuli Venezia Giulia Region. The development of this disease depends on weather conditions, particularly air humidity, rain and leaf-wetness. Forecast models can help the technicians of the extension services to predict the timing and the best system to use in operative programs. Unfortunately these models require data coming from meteorological stations which are often variable in space (e.g. rain, leaf-wetness) and hardly spatializable. In this work a system to display the daily infections of downy mildew all over the plane of Friuli Venezia Giulia (about 5.000 km2) is described. Elements of this model are: - the creation of a daily grid of rain estimated by the meteorological polarimetric radar (GPM-500) located in Fossalon di Grado; - the creation of daily grids of temperature, air humidity, solar radiation, wind speed, using data provided by 14 meteorological synoptic automatic stations located in the plain of the Region; - the creation of a daily grid of leaf-wetness computed using the SWEB model initialised by means of the above gridded data; - the estimation of the P. viticula infection level using a forecast model (in this case Goidanich). For each grid point the system provides graphically: the number of the actual cycles of P. viticula infections; the number of days requires for the next infection; the annual amount of infective cycles. We tested the system from May to August 2000 over a relatively small area (about 200 km2) containing a relatively dense network of automatic meteorological stations. Using the Goidanich model, downy mildew infections, calculated by using data provided by the radar and the synoptic stations, are in good agreement with the infections calculated using data from the dense network. So, the proposed method can be considered a good approach in the operative use of radar for crop protection.

  19. An ANN application for water quality forecasting.

    PubMed

    Palani, Sundarambal; Liong, Shie-Yui; Tkalich, Pavel

    2008-09-01

    Rapid urban and coastal developments often witness deterioration of regional seawater quality. As part of the management process, it is important to assess the baseline characteristics of the marine environment so that sustainable development can be pursued. In this study, artificial neural networks (ANNs) were used to predict and forecast quantitative characteristics of water bodies. The true power and advantage of this method lie in its ability to (1) represent both linear and non-linear relationships and (2) learn these relationships directly from the data being modeled. The study focuses on Singapore coastal waters. The ANN model is built for quick assessment and forecasting of selected water quality variables at any location in the domain of interest. Respective variables measured at other locations serve as the input parameters. The variables of interest are salinity, temperature, dissolved oxygen, and chlorophyll-alpha. A time lag up to 2Delta(t) appeared to suffice to yield good simulation results. To validate the performance of the trained ANN, it was applied to an unseen data set from a station in the region. The results show the ANN's great potential to simulate water quality variables. Simulation accuracy, measured in the Nash-Sutcliffe coefficient of efficiency (R(2)), ranged from 0.8 to 0.9 for the training and overfitting test data. Thus, a trained ANN model may potentially provide simulated values for desired locations at which measured data are unavailable yet required for water quality models.

  20. Online estimation of Allan variance coefficients based on a neural-extended Kalman filter.

    PubMed

    Miao, Zhiyong; Shen, Feng; Xu, Dingjie; He, Kunpeng; Tian, Chunmiao

    2015-01-23

    As a noise analysis method for inertial sensors, the traditional Allan variance method requires the storage of a large amount of data and manual analysis for an Allan variance graph. Although the existing online estimation methods avoid the storage of data and the painful procedure of drawing slope lines for estimation, they require complex transformations and even cause errors during the modeling of dynamic Allan variance. To solve these problems, first, a new state-space model that directly models the stochastic errors to obtain a nonlinear state-space model was established for inertial sensors. Then, a neural-extended Kalman filter algorithm was used to estimate the Allan variance coefficients. The real noises of an ADIS16405 IMU and fiber optic gyro-sensors were analyzed by the proposed method and traditional methods. The experimental results show that the proposed method is more suitable to estimate the Allan variance coefficients than the traditional methods. Moreover, the proposed method effectively avoids the storage of data and can be easily implemented using an online processor.

  1. The inclusion of downy mildews in a multi-locus-dataset and its reanalysis reveals a high degree of paraphyly in Phytophthora.

    PubMed

    Runge, Fabian; Telle, Sabine; Ploch, Sebastian; Savory, Elizabeth; Day, Brad; Sharma, Rahul; Thines, Marco

    2011-12-01

    Pathogens belonging to the Oomycota, a group of heterokont, fungal-like organisms, are amongst the most notorious pathogens in agriculture. In particular, the obligate biotrophic downy mildews and the hemibiotrophic members of the genus Phytophthora are responsible for a huge variety of destructive diseases, including sudden oak death caused by P. ramorum, potato late blight caused by P. infestans, cucurbit downy mildew caused by Pseudoperonospora cubensis, and grape downy mildew caused by Plasmopara viticola. About 800 species of downy mildews and roughly 100 species of Phytophthora are currently accepted, and recent studies have revealed that these groups are closely related. However, the degree to which Phytophthora is paraphyletic and where exactly the downy mildews insert into this genus in relation to other clades could not be inferred with certainty to date. Here we present a molecular phylogeny encompassing all clades of Phytophthora as represented in a multi-locus dataset and two representatives of the monophyletic downy mildews from divergent genera. Our results demonstrate that Phytophthora is at least six times paraphyletic with respect to the downy mildews. The downy mildew representatives are consistently nested within clade 4 (contains Phytophthora palmivora), which is placed sister to clade 1 (contains Phytophthora infestans). This finding would either necessitate placing all downy mildews and Phytopthora species in a single genus, either under the oldest generic name Peronospora or by conservation the later name Phytophthora, or the description of at least six new genera within Phytophthora. The complications of both options are discussed, and it is concluded that the latter is preferable, as it warrants fewer name changes and is more practical.

  2. Resistance to downy mildew in lettuce ‘La Brillante’ is conferred by dm50 gene and multiple QTL

    USDA-ARS?s Scientific Manuscript database

    Many cultivars of lettuce (Lactuca sativa L.) are susceptible to downy mildew, a nearly globally ubiquitous disease caused by Bremia lactucae. We previously determined that Batavia type cultivar La Brillante has a high level of field resistance to the disease in California. Testing of a mapping popu...

  3. Elicitation of resistance and associated defense responses in Trichoderma hamatum induced protection against pearl millet downy mildew pathogen

    PubMed Central

    Siddaiah, Chandra Nayaka; Satyanarayana, Niranjan Raj; Mudili, Venkataramana; Kumar Gupta, Vijai; Gurunathan, Selvakumar; Rangappa, Shobith; Huntrike, Shekar Shetty; Srivastava, Rakesh Kumar

    2017-01-01

    Endophytic Trichoderma hamatum UoM 13 isolated from pearl millet roots was evaluated for its efficiency to suppress downy mildew disease. Under laboratory conditions, T. hamatum seed treatment significantly enhanced pearl millet seed germination and seedling vigor. T. hamatum seed treatment resulted in systemic and durable immunity against pearl millet downy mildew disease under greenhouse and field conditions. T. hamatum treated seedlings responded to downy mildew infection with high lignification and callose deposition. Analysis of defense enzymes showed that T. hamatum treatment significantly enhanced the activities of glucanase, peroxidase, phenylalanine ammonia-lyase, and polyphenol oxidase in comparison to untreated control. RT-PCR analysis revealed differentially expressed transcripts of the defense enzymes and PR-proteins in treated, untreated, and checks, wherein PR-1, PR-5, and cell wall defense HRGPs were significantly over expressed in treated seedlings as against their lower expression in controls. T. hamatum treatment significantly stimulated endogenous salicylic acid (SA) levels and significantly upregulated important SA biosynthesis gene isochorismate synthase. The results indicated that T. hamatum UoM13 treatment induces resistance corresponding to significant over expression of endogenous SA, important defense enzymes, PR-proteins, and HRGPs, suggesting that SA biosynthetic pathway is involved in pearl millet for mounting systemic immunity against downy mildew pathogen. PMID:28322224

  4. Using next-generation sequencing to develop molecular diagnostics for Pseudoperonospora cubensis, the cucurbit downy mildew pathogen

    USDA-ARS?s Scientific Manuscript database

    Advances in Next Generation Sequencing (NGS) allow for rapid development of genomics resources needed to generate molecular diagnostics assays for infectious agents. NGS approaches are particularly helpful for organisms that cannot be cultured, such as the downy mildew pathogens, a group of biotrop...

  5. Control of Downy brome (Bromus tectorum) and Medusahead (Taeniatherum caput-medusae) With Rangeland Herbicides in Northeastern California

    USDA-ARS?s Scientific Manuscript database

    Downy brome and medusahead are the most problematic invasive annual grasses in rangelands of the western United States. In this study, we evaluated the effect of three fall-applied, and one spring-applied, herbicides or combinations on the control of these two invasive grasses in a sagebrush communi...

  6. Pl17 is a novel gene independent of known downy mildew resistance genes in the cultivated sunflower (Helianthus annuus L.)

    USDA-ARS?s Scientific Manuscript database

    Downy mildew (DM), caused by Plasmopara halstedii (Farl.) Berl. et de Toni, is one of the serious sunflower diseases in the world due to its high virulence and the variability of the pathogen. DM resistance in the USDA inbred line, HA 458, has been shown to be effective against all virulent races of...

  7. Downy mildew disease promotes the colonization of romaine lettuce by Escherichia coli O157:H7 and Salmonella enterica

    USDA-ARS?s Scientific Manuscript database

    Downy mildew, a plant disease caused by the fungus Bremia lactucae, is endemic in many lettuce growing regions of the world. Invasion by plant pathogens may create new portals and opportunities for microbial colonization of plants. The occurrence of outbreaks of Escherichia coli O157:H7 (EcO157) and...

  8. Emergence of new virulent races of Plasmopara halstedii inciting downy mildew on sunflower in the United States

    USDA-ARS?s Scientific Manuscript database

    Prior to 2009, no isolate of Plasmopara halstedii, the cause of sunflower downy mildew (DM), recovered from sunflower in the United States caused disease on resistance genes Pl6, Pl7 or Pl8. These genes, originally released by the USDA-ARS Sunflower Research Unit in 1985, have been used extensively ...

  9. Thermal insulation and accumulation of heat in the downy inflorescences of Saussurea medusa (Asteraceae) at high elevation in Yunnan, China.

    PubMed

    Tsukaya, Hirokazu; Fujikawa, Kazumi; Wu, Su-Gong

    2002-08-01

    Himalayan snowball plants, which are considered to be an extreme form of downy plants, have very dense trichomes on well-developed bracts that surround the inflorescences. It has been postulated that the downy inflorescences of these plants might serve to keep the interior of inflorescences warmer than the outside and, thus, to protect reproductive cells from low temperatures in their Himalayan habitat. In the present study, we examined the downy inflorescences of Saussurea medusaMaxim. in native habitats in the high alpine zone of the Henduan Mountains in Yunnan, China, and we analyzed the temperature within inflorescences after absorbance of light energy. S. medusais pollinated by bumblebees and we found that its inflorescences accumulated heat not on the inside, but, rather, on the upper surfaces. The thick hollow stems and the overlapping bracts with obvious epinasty might serve not only to retain heat, but also as an insulator to protect the inside against overheating, with apparent local warming of flowers that are located at the tops of plants, which are cone-shaped. We made a model that mimicked the warming of inflorescences, providing support for the hypothesis that the downy bracts of S. medusahave two functions: thermal insulation to protect the inside of flowers and the accumulation of heat on the upper surfaces of the inflorescence. Such a system might be effective in attracting pollinators and also in protecting tissues from extreme variations in temperature.

  10. Elicitation of resistance and associated defense responses in Trichoderma hamatum induced protection against pearl millet downy mildew pathogen.

    PubMed

    Siddaiah, Chandra Nayaka; Satyanarayana, Niranjan Raj; Mudili, Venkataramana; Kumar Gupta, Vijai; Gurunathan, Selvakumar; Rangappa, Shobith; Huntrike, Shekar Shetty; Srivastava, Rakesh Kumar

    2017-03-21

    Endophytic Trichoderma hamatum UoM 13 isolated from pearl millet roots was evaluated for its efficiency to suppress downy mildew disease. Under laboratory conditions, T. hamatum seed treatment significantly enhanced pearl millet seed germination and seedling vigor. T. hamatum seed treatment resulted in systemic and durable immunity against pearl millet downy mildew disease under greenhouse and field conditions. T. hamatum treated seedlings responded to downy mildew infection with high lignification and callose deposition. Analysis of defense enzymes showed that T. hamatum treatment significantly enhanced the activities of glucanase, peroxidase, phenylalanine ammonia-lyase, and polyphenol oxidase in comparison to untreated control. RT-PCR analysis revealed differentially expressed transcripts of the defense enzymes and PR-proteins in treated, untreated, and checks, wherein PR-1, PR-5, and cell wall defense HRGPs were significantly over expressed in treated seedlings as against their lower expression in controls. T. hamatum treatment significantly stimulated endogenous salicylic acid (SA) levels and significantly upregulated important SA biosynthesis gene isochorismate synthase. The results indicated that T. hamatum UoM13 treatment induces resistance corresponding to significant over expression of endogenous SA, important defense enzymes, PR-proteins, and HRGPs, suggesting that SA biosynthetic pathway is involved in pearl millet for mounting systemic immunity against downy mildew pathogen.

  11. QTLs for downy mildew resistance and their association with LRR-RLK resistance gene analogs in cucumber

    USDA-ARS?s Scientific Manuscript database

    Downy mildew (DM) caused by the obligate oomycete Pseudoperonospora cubensis is an important disease of cucumber and other cucurbit crops. For more than 50 years, DM was effectively controlled in cucumber through host resistance. The dm-1 gene became less effective in 2004 due to the appearance of a...

  12. Characterization of Single-Nucleotide-Polymorphism Markers for Plasmopara viticola, the Causal Agent of Grapevine Downy Mildew▿

    PubMed Central

    Delmotte, F.; Machefer, V.; Giresse, X.; Richard-Cervera, S.; Latorse, M. P.; Beffa, R.

    2011-01-01

    We report 34 new nuclear single-nucleotide-polymorphism (SNP) markers that have been developed from an expressed sequence tag library of Plasmopara viticola, the causal agent of grapevine downy mildew. This newly developed battery of markers will provide useful additional genetic tools for population genetic studies of this important agronomic species. PMID:21926208

  13. Overexpression of a thaumatin-like protein gene from Vitis amurensis improves downy mildew resistance in Vitis vinifera grapevine.

    PubMed

    He, Rongrong; Wu, Jiao; Zhang, Yali; Agüero, Cecilia B; Li, Xinlong; Liu, Shaoli; Wang, Chaoxia; Walker, M Andrew; Lu, Jiang

    2017-07-01

    Downy mildew is a highly destructive disease in grapevine production. A gene encoding pathogenesis-related (PR) thaumatin-like protein was isolated from the downy mildew-resistant grapevine "Zuoshan-1," a clonal selection from wild Vitis amurensis Rupr. The predicted thaumatin-like protein (VaTLP) has 225 amino acids and it is acidic, with a calculated isoelectric point of 4.8. The full length of the VaTLP gene was transformed into somatic embryogenic calli of V. vinifera 'Thompson Seedless' via Agrobacterium tumefaciens. Real-time RT-PCR confirmed that the VaTLP gene was expressed at a high level in the transgenic grapevines. Improved resistance of the transgenic lines against downy mildew was evaluated using leaf disks and whole plants inoculated with Plasmopara viticola, the pathogen causing grapevine downy mildew disease. Bioassay of the pathogen showed that both hyphae growth and asexual reproduction were inhibited significantly among the transgenic plants. Histological analysis also confirmed this disease resistance by demonstrating the inhibition and malformation of hyphae development in leaf tissue of the transgenic plants. These results indicated that the accumulation of VaTLP could enhance resistance to P. viticola in transgenic 'Thompson Seedless' grapevines.

  14. Evaluation of Gambian and Malian sorghum germplasm against downy mildew pathogen, Peronosclerospora sorghi, in Mexico and the USA

    USDA-ARS?s Scientific Manuscript database

    The recent outbreak of sorghum downy mildew (SDM) in Texas, USA, caused by a Peronosclerospora sorghi pathotype P3 resistant to the standard fungicide seed treatment, as well as the subsequent development of a new pathotype P6 that overcame resistance in some hybrids, has emphasized the importance ...

  15. Identification of QTLs conferring resistance to downy mildew in legacy cultivars of lettuce.

    PubMed

    Simko, Ivan; Atallah, Amy J; Ochoa, Oswaldo E; Antonise, Rudie; Galeano, Carlos H; Truco, Maria Jose; Michelmore, Richard W

    2013-10-07

    Many cultivars of lettuce (Lactuca sativa L.), the most popular leafy vegetable, are susceptible to downy mildew disease caused by Bremia lactucae. Cultivars Iceberg and Grand Rapids that were released in the 18th and 19th centuries, respectively, have high levels of quantitative resistance to downy mildew. We developed a population of recombinant inbred lines (RILs) originating from a cross between these two legacy cultivars, constructed a linkage map, and identified two QTLs for resistance on linkage groups 2 (qDM2.1) and 5 (qDM5.1) that determined resistance under field conditions in California and the Netherlands. The same QTLs determined delayed sporulation at the seedling stage in laboratory experiments. Alleles conferring elevated resistance at both QTLs originate from cultivar Iceberg. An additional QTL on linkage group 9 (qDM9.1) was detected through simultaneous analysis of all experiments with mixed-model approach. Alleles for elevated resistance at this locus originate from cultivar Grand Rapids.

  16. Identification of QTLs conferring resistance to downy mildew in legacy cultivars of lettuce

    PubMed Central

    Simko, Ivan; Atallah, Amy J.; Ochoa, Oswaldo E.; Antonise, Rudie; Galeano, Carlos H.; Truco, Maria Jose; Michelmore, Richard W.

    2013-01-01

    Many cultivars of lettuce (Lactuca sativa L.), the most popular leafy vegetable, are susceptible to downy mildew disease caused by Bremia lactucae. Cultivars Iceberg and Grand Rapids that were released in the 18th and 19th centuries, respectively, have high levels of quantitative resistance to downy mildew. We developed a population of recombinant inbred lines (RILs) originating from a cross between these two legacy cultivars, constructed a linkage map, and identified two QTLs for resistance on linkage groups 2 (qDM2.1) and 5 (qDM5.1) that determined resistance under field conditions in California and the Netherlands. The same QTLs determined delayed sporulation at the seedling stage in laboratory experiments. Alleles conferring elevated resistance at both QTLs originate from cultivar Iceberg. An additional QTL on linkage group 9 (qDM9.1) was detected through simultaneous analysis of all experiments with mixed-model approach. Alleles for elevated resistance at this locus originate from cultivar Grand Rapids. PMID:24096732

  17. Morphological and molecular characterization of the causal agent of downy mildew on Quinoa (Chenopodium quinoa).

    PubMed

    Choi, Young-Joon; Danielsen, Solveig; Lübeck, Mette; Hong, Seung-Beom; Delhey, Rolf; Shin, Hyeon-Dong

    2010-05-01

    Downy mildew is an economically important and widespread disease in quinoa (Chenopodium quinoa) growing areas. Although in many studies Peronospora farinosa is most commonly regarded as the causal agent of the disease, identification and classification of the pathogen remain still uncertain due to its taxonomic confusion. Thirty-six Peronospora isolates from quinoa with different geographic origins including Argentina, Bolivia, Denmark, Ecuador, and Peru were morphologically and molecularly compared with Peronospora species from other Chenopodium species. The morphology of three herbarium specimens was similar to that of P. variabilis, which originated from C. album, characterized by flexuous to curved ultimate branchlets and pedicellated conidia. Phylogenetic analysis based on ITS rDNA sequences also placed the quinoa pathogen within the same clade as P. variabilis. Within the ITS rDNA sequences of the quinoa pathogens, two base substitutions were found, which separated the majority of the Danish isolates from isolates from South America, but no sequence difference was found among the isolates from different cultivars of quinoa. The present results indicate that the pathogen responsible for the quinoa downy mildew is identical to Peronospora variabilis and that it should not be lumped with P. farinosa as claimed previously by most studies.

  18. Control of downy mildew (Pseudoperonospora cubensis) of greenhouse grown cucumbers with alternative biological agents.

    PubMed

    Scherf, A; Schuster, C; Marx, P; Gärber, U; Konstantinidou-Doltsinis, S; Schmitt, A

    2010-01-01

    In organic cucumber production infection with downy mildew (Pseudoperonospora cubensis) is a major problem. Plant extracts from Glycyrrhiza glabra L. (licorice), a plant belonging to the family Fabaceae, and Salvia officinalis (sage) as well as cultures of the bacterium Aneurinibacillus migulanus were investigated for efficacy of disease control under commercial growing conditions. Contrary to bioassays, where sage extract and the microorganism showed highest activity, in the trials of 2008 G. glabra extract was more effective than sage extract or A. migulanus against P. cubensis. Parameters such as concentrations of the preparations or application intervals could have been the reason for this. In the following year's trial (2009) the concentration of these agents was therefore increased somewhat and plants were either treated in seven day application intervals or in ten day application intervals. In the semi-commercial trials of 2009 all alternative biological agents showed good efficacies up to around 80% against infection with downy mildew. The application interval seemed to have a marginal effect only. Again, the licorice extract tended to be the best agent.

  19. Optical detection of downy mildew in grapevine leaves: daily kinetics of autofluorescence upon infection

    PubMed Central

    Cerovic, Zoran G.

    2013-01-01

    A 15-day survey of autofluorescence has been conducted upon infection by downy mildew [Plasmopara viticola (Berk. & M.A. Curtis) Berl. & de Toni] of leaves of a susceptible grapevine genotype. Different autofluorescence signals were followed from the cellular to the whole-leaf level by using four types of devices for fluorosensing: a macroscope, a spectrofluorimeter, a portable field optical sensor (the Multiplex 3), and a field fluorescence sensor prototype with 335nm excitation. It was shown for the first time, by the three different techniques and at three different scales, that the stilbene-dependent violet–blue autofluorescence (VBF) had a transitory behaviour, increasing to a maximum 6 days post-inoculation (DPI) and then decreasing to a constant lower level, nevertheless significantly higher than in the control leaf. This behaviour could be sensed from both sides of the leaf. On the abaxial side, VBF could discriminate the presence of infection from 1 DPI, and on the adaxial side from 3 DPI. There was a constant increase in blue-excited green fluorescence starting from 8 DPI, concomitant with a decrease in leaf chlorophyll content sensed by one reflectance and two fluorescence indices available on the Multiplex 3 sensor. These results show that a pre-symptomatic and symptomatic sensing of downy mildew is possible by autofluorescence-based sensors, and this is potentially applicable in the field. PMID:23213137

  20. Proteomics towards the understanding of elicitor induced resistance of grapevine against downy mildew.

    PubMed

    Lemaître-Guillier, Christelle; Hovasse, Agnès; Schaeffer-Reiss, Christine; Recorbet, Ghislaine; Poinssot, Benoît; Trouvelot, Sophie; Daire, Xavier; Adrian, Marielle; Héloir, Marie-Claire

    2017-03-06

    Elicitors are known to trigger plant defenses in response to biotic stress, but do not systematically lead to effective resistance to pathogens. The reasons explaining such differences remain misunderstood. Therefore, elicitation and induced resistance (IR) were investigated through the comparison of two modified β-1,3 glucans applied on grapevine (Vitis vinifera) leaves before and after inoculation with Plasmopara viticola, the causal agent of downy mildew. The sulfated (PS3) and the shortened (H13) forms of laminarin are both known to elicit defense responses whereas only PS3 induces resistance against downy mildew. The analysis of the 2-DE gel electrophoresis revealed that PS3 and H13 induced distinct proteomic profiles after treatment and pathogen inoculation. Our results point out that the PS3-induced resistance is associated with the activation of the primary metabolism especially on amino acids and carbohydrates pathways. In addition, few proteins, such as the 12-oxophytodienoate reductase (OPR-like) related to the OPDA pathway, and an Arsenite-resistance protein (Serrate-like protein) could be considered as useful markers of induced resistance.

  1. Polymorphic SSR Markers for Plasmopara obducens (Peronosporaceae), the Newly Emergent Downy Mildew Pathogen of Impatiens (Balsaminaceae)

    DOE PAGES

    Salgado-Salazar, Catalina; Rivera, Yazmín; Veltri, Daniel; ...

    2015-11-10

    Premise of the study: Simple sequence repeat (SSR) markers were developed for Plasmopara obducens, the causal agent of the newly emergent downy mildew disease of Impatiens walleriana. Methods and Results: A 202-Mb draft genome assembly was generated from P. obducens using Illumina technology and mined to identify 13,483 SSR motifs. Primers were synthesized for 62 marker candidates, of which 37 generated reliable PCR products. Testing of the 37 markers using 96 P. obducens samples showed 96% of the markers were polymorphic, with 2-6 alleles observed. Observed and expected heterozygosity ranged from 0.000-0.892 and 0.023-0.746, respectively. Just 17 markers were sufficientmore » to identify all multilocus genotypes. Conclusions: These are the first SSR markers available for this pathogen, and one of the first molecular resources. These markers will be useful in assessing variation in pathogen populations and determining the factors contributing to the emergence of destructive impatiens downy mildew disease.« less

  2. Application of Allan Deviation to Assessing Uncertainties of Continuous-measurement Instruments, and Optimizing Calibration Schemes

    NASA Astrophysics Data System (ADS)

    Jacobson, Gloria; Rella, Chris; Farinas, Alejandro

    2014-05-01

    Technological advancement of instrumentation in atmospheric and other geoscience disciplines over the past decade has lead to a shift from discrete sample analysis to continuous, in-situ monitoring. Standard error analysis used for discrete measurements is not sufficient to assess and compare the error contribution of noise and drift from continuous-measurement instruments, and a different statistical analysis approach should be applied. The Allan standard deviation analysis technique developed for atomic clock stability assessment by David W. Allan [1] can be effectively and gainfully applied to continuous measurement instruments. As an example, P. Werle et al has applied these techniques to look at signal averaging for atmospheric monitoring by Tunable Diode-Laser Absorption Spectroscopy (TDLAS) [2]. This presentation will build on, and translate prior foundational publications to provide contextual definitions and guidelines for the practical application of this analysis technique to continuous scientific measurements. The specific example of a Picarro G2401 Cavity Ringdown Spectroscopy (CRDS) analyzer used for continuous, atmospheric monitoring of CO2, CH4 and CO will be used to define the basics features the Allan deviation, assess factors affecting the analysis, and explore the time-series to Allan deviation plot translation for different types of instrument noise (white noise, linear drift, and interpolated data). In addition, the useful application of using an Allan deviation to optimize and predict the performance of different calibration schemes will be presented. Even though this presentation will use the specific example of the Picarro G2401 CRDS Analyzer for atmospheric monitoring, the objective is to present the information such that it can be successfully applied to other instrument sets and disciplines. [1] D.W. Allan, "Statistics of Atomic Frequency Standards," Proc, IEEE, vol. 54, pp 221-230, Feb 1966 [2] P. Werle, R. Miicke, F. Slemr, "The Limits

  3. Ann Arbor, Michigan: Solar in Action (Brochure)

    SciTech Connect

    Not Available

    2011-10-01

    This brochure provides an overview of the challenges and successes of Ann Arbor, Michigan, a 2007 Solar America City awardee, on the path toward becoming a solar-powered community. Accomplishments, case studies, key lessons learned, and local resource information are given.

  4. Katherine Anne Porter on Her Contemporaries.

    ERIC Educational Resources Information Center

    Bridges, Phyllis

    Personal experiences with and critical judgments of leading artists and intellectuals of the twentieth century are recorded in Katherine Anne Porter's essays, letters and conversations which provide snapshots of her attitudes and encounters. Porter's commentaries about such contemporaries as Ernest Hemingway, William Faulkner, Saul Bellow,…

  5. Ann Arbor Session I: Breaking Ground.

    ERIC Educational Resources Information Center

    Music Educators Journal, 1979

    1979-01-01

    Summarizes the first session of the National Symposium on the Applications of Psychology to the Teaching and Learning of Music held at Ann Arbor from October 30 to November 2, 1978. Sessions concerned auditory perception, motor learning, child development, memory and information processing, and affect and motivation. (SJL)

  6. Obituary: Anne Barbara Underhill, 1920-2003

    NASA Astrophysics Data System (ADS)

    Roman, Nancy Grace

    2003-12-01

    Anne was born in Vancouver, British Columbia on 12 June 1920. Her parents were Frederic Clare Underhill, a civil engineer and Irene Anna (née Creery) Underhill. She had a twin brother and three younger brothers. As a young girl she was active in Girl Guides and graduated from high school winning the Lieutenant Governor's medal as one of the top students in the Province. She also excelled in high school sports. Her mother died when Anne was 18 and, while undertaking her university studies, Anne assisted in raising her younger brothers. Her twin brother was killed in Italy during World War II (1944), a loss that Anne felt deeply. Possibly because of fighting to get ahead in astronomy, a field overwhelming male when she started, she frequently appeared combative. At the University of British Columbia, Anne obtained a BA (honors) in Chemistry (1942), followed by a MA in 1944. After working for the NRC in Montreal for a year, she studied at the University of Toronto prior to entering the University of Chicago in 1946 to obtain her PhD. Her thesis was the first model computed for a multi-layered stellar atmosphere (1948). During this time she worked with Otto Struve, developing a lifetime interest in hot stars and the analysis of their high dispersion spectra. She received two fellowships from the University Women of Canada. She received a U.S. National Research Fellowship to work at the Copenhagen Observatory, and upon its completion, she returned to British Columbia to work at the Dominion Astrophysical Observatory as a research scientist from 1949--1962. During this period she spent a year at Harvard University as a visiting professor and at Princeton where she used their advanced computer to write the first code for modeling stellar atmospheres. Anne was invited to the University of Utrecht (Netherlands) as a full professor in 1962. She was an excellent teacher, well liked by the students in her classes, and by the many individuals that she guided throughout her

  7. Ann Field | Center for Cancer Research

    Cancer.gov

    Ann Field, PhD, RAC November 1 Associate Director, Research Project and Portfolio Management One MedImmune Way Gaithersburg, MD 20878fielda@medimmune.comwww.medimmune.com Topic: “Transitioning from a bench scientist in academia/government to non-bench positions in the biopharmaceutical industry”

  8. Phosphorus component in AnnAGNPS

    USGS Publications Warehouse

    Yuan, Y.; Bingner, R.L.; Theurer, F.D.; Rebich, R.A.; Moore, P.A.

    2005-01-01

    The USDA Annualized Agricultural Non-Point Source Pollution model (AnnAGNPS) has been developed to aid in evaluation of watershed response to agricultural management practices. Previous studies have demonstrated the capability of the model to simulate runoff and sediment, but not phosphorus (P). The main purpose of this article is to evaluate the performance of AnnAGNPS on P simulation using comparisons with measurements from the Deep Hollow watershed of the Mississippi Delta Management Systems Evaluation Area (MDMSEA) project. A sensitivity analysis was performed to identify input parameters whose impact is the greatest on P yields. Sensitivity analysis results indicate that the most sensitive variables of those selected are initial soil P contents, P application rate, and plant P uptake. AnnAGNPS simulations of dissolved P yield do not agree well with observed dissolved P yield (Nash-Sutcliffe coefficient of efficiency of 0.34, R2 of 0.51, and slope of 0.24); however, AnnAGNPS simulations of total P yield agree well with observed total P yield (Nash-Sutcliffe coefficient of efficiency of 0.85, R2 of 0.88, and slope of 0.83). The difference in dissolved P yield may be attributed to limitations in model simulation of P processes. Uncertainties in input parameter selections also affect the model's performance.

  9. Katherine Anne Porter on Her Contemporaries.

    ERIC Educational Resources Information Center

    Bridges, Phyllis

    Personal experiences with and critical judgments of leading artists and intellectuals of the twentieth century are recorded in Katherine Anne Porter's essays, letters and conversations which provide snapshots of her attitudes and encounters. Porter's commentaries about such contemporaries as Ernest Hemingway, William Faulkner, Saul Bellow,…

  10. Multi-locus tree and species tree approaches toward resolving a complex clade of downy mildews (Straminipila, Oomycota), including pathogens of beet and spinach

    USDA-ARS?s Scientific Manuscript database

    Accurate species determination of plant pathogens is a prerequisite for their control and quarantine, and further for assessing their potential threat to crops. The family Peronosporaceae (Straminipila; Oomycota) consists of obligate biotrophic pathogens that cause downy mildew disease on angiosperm...

  11. Incorporation of temperature and solar radiation thresholds to modify a lettuce downy mildew warning system.

    PubMed

    Wu, B M; van Bruggen, A H C; Subbarao, K V; Scherm, H

    2002-06-01

    ABSTRACT The effect of temperature on infection of lettuce by Bremia lactucae was investigated in controlled environment studies and in the field. In controlled conditions, lettuce seedlings inoculated with B. lactucae were incubated at 15, 20, 25, or 30 degrees C during a 4-h wet period immediately after inoculation or at the same temperatures during an 8-h dry period after the 4-h postinoculation wet period at 15 degrees C. High temperatures during wet and dry periods reduced subsequent disease incidence. Historical data from field studies in 1991 and 1992, in which days with or without infection had been identified, were analyzed by comparing average air temperatures during 0600 to 1000 and 1000 to 1400 Pacific standard time (PST) between the two groups of days. Days without infection had significantly higher temperatures (mean 21.4 degrees C) than days with infection (20.3 degrees C) during 1000 to 1400 PST (P < 0.01) but not during 0600 to 1000 PST. Therefore, temperature thresholds of 20 and 22 degrees C for the 3-h wet period after sunrise and the subsequent 4-h postpenetration period, respectively, were added to a previously developed disease warning system that predicts infection when morning leaf wetness lasts >/=4 h from 0600 PST. No infection was assumed to occur if average temperature during these periods exceeded the thresholds. Based on nonlinear regression and receiver operating characteristic curve analysis, the leaf wetness threshold of the previous warning system was also modified to >/=3-h leaf wetness (>/=0900 PST). Furthermore, by comparing solar radiation on days with infection and without infection, we determined that high solar radiation during 0500 to 0600 PST in conjunction with leaf wetness ending between 0900 and 1000 PST was associated with downy mildew infection. Therefore, instead of starting at 0600 PST, the calculation of the 3-h morning leaf wetness period was modified to start after sunrise, defined as the hour when measured

  12. A quantitative review of fungicide efficacy for managing downy mildew in cucurbits.

    PubMed

    Ojiambo, P S; Paul, P A; Holmes, G J

    2010-10-01

    A meta-analysis of the effect of fungicides on cucurbit downy mildew was conducted using data previously published in Fungicide & Nematicide Tests and Plant Disease Management Reports from 2000 to 2008. Standardized mean effect size (the difference in disease intensity expressed in standard deviation units between the fungicide treatment and its corresponding untreated control) was calculated for each of the 105 field studies evaluating the effects of fungicides on cucurbit downy mildew. Fixed- and random-effects meta-analyses were performed on the log-transformed standardized mean effect sizes to estimate the overall mean effect size (L+), and to determine the variability in the effect size among studies. Fungicides led to a significant (P<0.001) reduction in disease with an L+ value of 1.198, indicating that, overall, fungicides were highly effective against cucurbit downy mildew. Fixed- and random-effects meta-analyses were then conducted to determine the effects of moderator variables on L+. The fixed-effects model resulted in narrower 95% confidence intervals and generally lower estimates of moderator subgroup mean effect size (L) than the random-effects models. Fungicide efficacy was significantly (P<0.001) greater in cucumber, with L being 26.5% higher in cucumber than in other cucurbits. Year of study, number of sprays, and disease pressure in the control significantly (P<0.001) affected L. Fungicide efficacy was significantly lower during the 2004-05 season than prior to or after the 2004-05 season. Studies in which disease pressure was moderate had a significantly higher L than studies with either low or high disease pressure. Fungicide efficacy was ≥22% in studies that received 5 to 6 sprays than in studies that received 1 to 4 or >6 sprays. Fungicide products led to a significant (P<0.001) reduction in disease, although there was substantial between-study variability. The pyridinylmethyl-benzamide group of fungicides (fluopicolide) was the most

  13. Breakdown of resistance to grapevine downy mildew upon limited deployment of a resistant variety

    PubMed Central

    2010-01-01

    Background Natural disease resistance is a cost-effective and environmentally friendly way of controlling plant disease. Breeding programmes need to make sure that the resistance deployed is effective and durable. Grapevine downy mildew, caused by the Oomycete Plasmopara viticola, affects viticulture and it is controlled with pesticides. Downy mildew resistant grapevine varieties are a promising strategy to control the disease, but their use is currently restricted to very limited acreages. The arising of resistance-breaking isolates under such restricted deployment of resistant varieties would provide valuable information to design breeding strategies for the deployment of resistance genes over large acreages whilst reducing the risks of the resistance being defeated. The observation of heavy downy mildew symptoms on a plant of the resistant variety Bianca, whose resistance is conferred by a major gene, provided us with a putative example of emergence of a resistance-breaking isolate in the interaction between grapevine and P. viticola. Results In this paper we describe the emergence of a P. viticola isolate (isolate SL) that specifically overcomes Rpv3, the major resistance gene carried by Bianca at chromosome 18. We show that isolate SL has the same behaviour as two P. viticola isolates avirulent on Bianca (isolates SC and SU) when inoculated on susceptible plants or on resistant plants carrying resistances derived from other sources, suggesting there is no fitness cost associated to the virulence. Molecular analysis shows that all three isolates are genetically closely related. Conclusions Our results are the first description of a resistance-breaking isolate in the grapevine/P. viticola interaction, and show that, despite the reduced genetic variability of P. viticola in Europe compared to its basin of origin and the restricted use of natural resistance in European viticulture, resistance-breaking isolates overcoming monogenic resistances may arise even in

  14. Observation, Inference, and Imagination: Elements of Edgar Allan Poe's Philosophy of Science

    ERIC Educational Resources Information Center

    Gelfert, Axel

    2014-01-01

    Edgar Allan Poe's standing as a literary figure, who drew on (and sometimes dabbled in) the scientific debates of his time, makes him an intriguing character for any exploration of the historical interrelationship between science, literature and philosophy. His sprawling "prose-poem" "Eureka" (1848), in particular, has…

  15. Politics and Education in America's Multicultural Society: An African-American Studies' Response to Allan Bloom.

    ERIC Educational Resources Information Center

    Hayes, Floyd W., III

    1989-01-01

    In "The Closing of the American Mind," Allan Bloom responds to educational problems by blaming African-Americans for creating a separate intellectual world. He blames universities for retreating from traditional education which stresses the supremacy of Western ideals. His neo-conservatism dominates current educational policy and must be…

  16. Observation, Inference, and Imagination: Elements of Edgar Allan Poe's Philosophy of Science

    ERIC Educational Resources Information Center

    Gelfert, Axel

    2014-01-01

    Edgar Allan Poe's standing as a literary figure, who drew on (and sometimes dabbled in) the scientific debates of his time, makes him an intriguing character for any exploration of the historical interrelationship between science, literature and philosophy. His sprawling "prose-poem" "Eureka" (1848), in particular, has…

  17. European Studies as Answer to Allan Bloom's "The Closing of the American Mind."

    ERIC Educational Resources Information Center

    Macdonald, Michael H.

    European studies can provide a solution to several of the issues raised in Allan Bloom's "The Closing of the American Mind." European studies pursue the academic quest for what is truth, what is goodness, and what is beauty. In seeking to answer these questions, the Greeks were among the first to explore many of humanity's problems and…

  18. The Art of George Morrison and Allan Houser: The Development and Impact of Native Modernism

    ERIC Educational Resources Information Center

    Montiel, Anya

    2005-01-01

    The idea for a retrospective on George Morrison and Allan Houser as one of the inaugural exhibitions at the National Museum of the American Indian (NMAI) came from the NMAI curator of contemporary art, Truman Lowe. An artist and sculptor himself, Lowe knew both artists personally and saw them as mentors and visionaries. Lowe advised an exhibition…

  19. Playing on the Right Side of the Brain: An Interview with Allan N. Schore

    ERIC Educational Resources Information Center

    American Journal of Play, 2017

    2017-01-01

    Allan N. Schore has served on the clinical faculty of the Department of Psychiatry and Biobehavioral Sciences at UCLA's David Geffen School of Medicine since 1996 and has maintained a private clinical practice for more than four decades. He has contributed significant research to the disciplines of interpersonal neurobiology, affective…

  20. The Art of George Morrison and Allan Houser: The Development and Impact of Native Modernism

    ERIC Educational Resources Information Center

    Montiel, Anya

    2005-01-01

    The idea for a retrospective on George Morrison and Allan Houser as one of the inaugural exhibitions at the National Museum of the American Indian (NMAI) came from the NMAI curator of contemporary art, Truman Lowe. An artist and sculptor himself, Lowe knew both artists personally and saw them as mentors and visionaries. Lowe advised an exhibition…

  1. Horror from the Soul--Gothic Style in Allan Poe's Horror Fictions

    ERIC Educational Resources Information Center

    Sun, Chunyan

    2015-01-01

    Edgar Allan Poe made tremendous contribution to horror fiction. Poe's inheritance of gothic fiction and American literature tradition combined with his living experience forms the background of his horror fictions. He inherited the tradition of the gothic fictions and made innovations on it, so as to penetrate to subconsciousness. Poe's horror…

  2. An Interview with Allan Wigfield: A Giant on Research on Expectancy Value, Motivation, and Reading Achievement

    ERIC Educational Resources Information Center

    Bembenutty, Hefer

    2012-01-01

    This article presents an interview with Allan Wigfield, professor and chair of the Department of Human Development and distinguished scholar-teacher at the University of Maryland. He has authored more than 100 peer-reviewed journal articles and book chapters on children's motivation and other topics. He is a fellow of Division 15 (Educational…

  3. Where Were the Whistleblowers? The Case of Allan McDonald and Roger Boisjoly.

    ERIC Educational Resources Information Center

    Stewart, Lea P.

    Employees who "blow the whistle" on their company because they believe it is engaged in practices that are illegal, immoral, or harmful to the public, often face grave consequences for their actions, including demotion, harassment, forced resignation, or termination. The case of Allan McDonald and Roger Boisjoly, engineers who blew the…

  4. Allan deviation computations of a linear frequency synthesizer system using frequency domain techniques

    NASA Technical Reports Server (NTRS)

    Wu, Andy

    1995-01-01

    Allan Deviation computations of linear frequency synthesizer systems have been reported previously using real-time simulations. Even though it takes less time compared with the actual measurement, it is still very time consuming to compute the Allan Deviation for long sample times with the desired confidence level. Also noises, such as flicker phase noise and flicker frequency noise, can not be simulated precisely. The use of frequency domain techniques can overcome these drawbacks. In this paper the system error model of a fictitious linear frequency synthesizer is developed and its performance using a Cesium (Cs) atomic frequency standard (AFS) as a reference is evaluated using frequency domain techniques. For a linear timing system, the power spectral density at the system output can be computed with known system transfer functions and known power spectral densities from the input noise sources. The resulting power spectral density can then be used to compute the Allan Variance at the system output. Sensitivities of the Allan Variance at the system output to each of its independent input noises are obtained, and they are valuable for design trade-off and trouble-shooting.

  5. Allan Bloom, Mike Rose, and Paul Goodman: In Search of a Lost Pedagogical Synthesis.

    ERIC Educational Resources Information Center

    Smith, Jeff

    1993-01-01

    Discusses and compares two recent books on American higher education: "The Closing of the American Mind" by Allan Bloom, and "Lives on the Boundary" by Mike Rose. Develops a view which synthesizes those of Bloom and Rose. Considers this view as comparable to that of Paul Goodman. (HB)

  6. The Allan variance in the presence of a compound Poisson process modelling clock frequency jumps

    NASA Astrophysics Data System (ADS)

    Formichella, Valerio

    2016-12-01

    Atomic clocks can be affected by frequency jumps occurring at random times and with a random amplitude. The frequency jumps degrade the clock stability and this is captured by the Allan variance. In this work we assume that the random jumps can be modelled by a compound Poisson process, independent of the other stochastic and deterministic processes affecting the clock stability. Then, we derive the analytical expression of the Allan variance of a jumping clock. We find that the analytical Allan variance does not depend on the actual shape of the jumps amplitude distribution, but only on its first and second moments, and its final form is the same as for a clock with a random walk of frequency and a frequency drift. We conclude that the Allan variance cannot distinguish between a compound Poisson process and a Wiener process, hence it may not be sufficient to correctly identify the fundamental noise processes affecting a clock. The result is general and applicable to any oscillator, whose frequency is affected by a jump process with the described statistics.

  7. An Interview with Allan Wigfield: A Giant on Research on Expectancy Value, Motivation, and Reading Achievement

    ERIC Educational Resources Information Center

    Bembenutty, Hefer

    2012-01-01

    This article presents an interview with Allan Wigfield, professor and chair of the Department of Human Development and distinguished scholar-teacher at the University of Maryland. He has authored more than 100 peer-reviewed journal articles and book chapters on children's motivation and other topics. He is a fellow of Division 15 (Educational…

  8. Allan M. Freedman, LLB: a lawyer’s gift to Canadian chiropractors

    PubMed Central

    Brown, Douglas M.

    2007-01-01

    This paper reviews the leadership role, contributions, accolades, and impact of Professor Allan Freedman through a 30 year history of service to CMCC and the chiropractic profession in Canada. Professor Freedman has served as an educator, philanthropist and also as legal counsel. His influence on chiropractic organizations and chiropractors during this significant period in the profession is discussed. PMID:18060008

  9. 75 FR 13334 - Notice of Availability of Draft Environmental Assessment; Ann Arbor Municipal Airport, Ann Arbor, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-19

    ... Instructions for Airport Actions; and the President's Council on Environmental Quality (CEQ) Regulations... Federal Aviation Administration Notice of Availability of Draft Environmental Assessment; Ann Arbor Municipal Airport, Ann Arbor, MI AGENCY: The Federal Aviation Administration is issuing this notice...

  10. Multi-Dimensional Analysis of Large, Complex Slope Instability: Case study of Downie Slide, British Columbia, Canada. (Invited)

    NASA Astrophysics Data System (ADS)

    Kalenchuk, K. S.; Hutchinson, D.; Diederichs, M. S.

    2013-12-01

    Downie Slide, one of the world's largest landslides, is a massive, active, composite, extremely slow rockslide located on the west bank of the Revelstoke Reservoir in British Columbia. It is a 1.5 billion m3 rockslide measuring 2400 m along the river valley, 3300m from toe to headscarp and up to 245 m thick. Significant contributions to the field of landslide geomechanics have been made by analyses of spatially and temporally discriminated slope deformations, and how these are controlled by complex geological and geotechnical factors. Downie Slide research demonstrates the importance of delineating massive landslides into morphological regions in order to characterize global slope behaviour and identify localized events, which may or may not influence the overall slope deformation patterns. Massive slope instabilities do not behave as monolithic masses, rather, different landslide zones can display specific landslide processes occurring at variable rates of deformation. The global deformation of Downie Slide is extremely slow moving; however localized regions of the slope incur moderate to high rates of movement. Complex deformation processes and composite failure mechanism are contributed to by topography, non-uniform shear surfaces, heterogeneous rockmass and shear zone strength and stiffness characteristics. Further, from the analysis of temporal changes in landslide behaviour it has been clearly recognized that different regions of the slope respond differently to changing hydrogeological boundary conditions. State-of-the-art methodologies have been developed for numerical simulation of large landslides; these provide important tools for investigating dynamic landslide systems which account for complex three-dimensional geometries, heterogenous shear zone strength parameters, internal shear zones, the interaction of discrete landslide zones and piezometric fluctuations. Numerical models of Downie Slide have been calibrated to reproduce observed slope behaviour

  11. Resurgence of Pseudoperonospora cubensis: The Causal Agent of Cucurbit Downy Mildew.

    PubMed

    Cohen, Yigal; Van den Langenberg, Kyle M; Wehner, Todd C; Ojiambo, Peter S; Hausbeck, Mary; Quesada-Ocampo, Lina M; Lebeda, Aleš; Sierotzki, Helge; Gisi, Ulrich

    2015-07-01

    The downy mildew pathogen, Pseudoperonospora cubensis, which infects plant species in the family Cucurbitaceae, has undergone major changes during the last decade. Disease severity and epidemics are far more destructive than previously reported, and new genotypes, races, pathotypes, and mating types of the pathogen have been discovered in populations from around the globe as a result of the resurgence of the disease. Consequently, disease control through host plant resistance and fungicide applications has become more complex. This resurgence of P. cubensis offers challenges to scientists in many research areas including pathogen biology, epidemiology and dispersal, population structure and population genetics, host preference, host-pathogen interactions and gene expression, genetic host plant resistance, inheritance of host and fungicide resistance, and chemical disease control. This review serves to summarize the current status of this major pathogen and to guide future management and research efforts within this pathosystem.

  12. MALDI-based intact spore mass spectrometry of downy and powdery mildews.

    PubMed

    Chalupová, Jana; Sedlářová, Michaela; Helmel, Michaela; Rehulka, Pavel; Marchetti-Deschmann, Martina; Allmaier, Günter; Sebela, Marek

    2012-08-01

    Fast and easy identification of fungal phytopathogens is of great importance in agriculture. In this context, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has emerged as a powerful tool for analyzing microorganisms. This study deals with a methodology for MALDI-TOF MS-based identification of downy and powdery mildews representing obligate biotrophic parasites of crop plants. Experimental approaches for the MS analyses were optimized using Bremia lactucae, cause of lettuce downy mildew, and Oidium neolycopersici, cause of tomato powdery mildew. This involved determining a suitable concentration of spores in the sample, selection of a proper MALDI matrix, looking for the optimal solvent composition, and evaluation of different sample preparation methods. Furthermore, using different MALDI target materials and surfaces (stainless steel vs polymer-based) and applying various conditions for sample exposure to the acidic MALDI matrix system were investigated. The dried droplet method involving solvent evaporation at room temperature was found to be the most suitable for the deposition of spores and MALDI matrix on the target and the subsequent crystallization. The concentration of spore suspension was optimal between 2 and 5 × 10(9) spores per ml. The best peptide/protein profiles (in terms of signal-to-noise ratio and number of peaks) were obtained by combining ferulic and sinapinic acids as a mixed MALDI matrix. A pretreatment of the spore cell wall with hydrolases was successfully introduced prior to MS measurements to obtain more pronounced signals. Finally, a novel procedure was developed for direct mass spectra acquisition from infected plant leaves. Copyright © 2012 John Wiley & Sons, Ltd.

  13. Mycosubtilin and surfactin are efficient, low ecotoxicity molecules for the biocontrol of lettuce downy mildew.

    PubMed

    Deravel, Jovana; Lemière, Sébastien; Coutte, François; Krier, François; Van Hese, Nathalie; Béchet, Max; Sourdeau, Nathanaëlle; Höfte, Monica; Leprêtre, Alain; Jacques, Philippe

    2014-01-01

    The use of surfactin and mycosubtilin as an eco-friendly alternative to control lettuce downy mildew caused by the obligate pathogen Bremia lactucae was investigated. Preliminary ecotoxicity evaluations obtained from three different tests revealed the rather low toxicity of these lipopeptides separately or in combination. The EC50 (concentration estimated to cause a 50 % response by the exposed test organisms) was about 100 mg L(-1) in Microtox assays and 6 mg L(-1) in Daphnia magna immobilization tests for mycosubtilin and 125 mg L(-1) and 25 mg L(-1) for surfactin, respectively. The toxicity of the mixture mycosubtilin/surfactin (1:1, w/w) was close to that obtained with mycosubtilin alone. In addition, the very low phytotoxic effect of these lipopeptides has been observed on germination and root growth of garden cress Lepidium sativum L. While a surfactin treatment did not influence the development of B. lactucae on lettuce plantlets, treatment with 100 mg L(-1) of mycosubtilin produced about seven times more healthy plantlets than the control samples, indicating that mycosubtilin strongly reduced the development of B. lactucae. The mixture mycosubtilin/surfactin (50:50 mg L(-1)) gave the same result on B. lactucae development as 100 mg L(-1) of mycosubtilin. The results of ecotoxicity as well as those obtained in biocontrol experiments indicated that the presence of surfactin enhances the biological activities of mycosubtilin. Mycosubtilin and surfactin were thus found to be efficient compounds against lettuce downy mildew, with low toxicity compared to the toxicity values of chemical pesticides. This is the first time that Bacillus lipopeptides have been tested in vivo against an obligate pathogen and that ecotoxic values have been given for surfactin and mycosubtilin.

  14. Genetic dissection of sex determinism, inflorescence morphology and downy mildew resistance in grapevine.

    PubMed

    Marguerit, Elisa; Boury, Christophe; Manicki, Aurélie; Donnart, Martine; Butterlin, Gisèle; Némorin, Alice; Wiedemann-Merdinoglu, Sabine; Merdinoglu, Didier; Ollat, Nathalie; Decroocq, Stéphane

    2009-05-01

    A genetic linkage map of grapevine was constructed using a pseudo-testcross strategy based upon 138 individuals derived from a cross of Vitis vinifera Cabernet Sauvignon x Vitis riparia Gloire de Montpellier. A total of 212 DNA markers including 199 single sequence repeats (SSRs), 11 single strand conformation polymorphisms (SSCPs) and two morphological markers were mapped onto 19 linkage groups (LG) which covered 1,249 cM with an average of 6.7 cM between markers. The position of SSR loci in the maps presented here is consistent with the genome sequence. Quantitative traits loci (QTLs) for several traits of inflorescence and flower morphology, and downy mildew resistance were investigated. Two novel QTLs for downy mildew resistance were mapped on linkage groups 9 and 12, they explain 26.0-34.4 and 28.9-31.5% of total variance, respectively. QTLs for inflorescence morphology with a large effect (14-70% of total variance explained) were detected close to the Sex locus on LG 2. The gene of the enzyme 1-aminocyclopropane-1-carboxylic acid synthase, involved in melon male organ development and located in the confidence interval of all QTLs detected on the LG 2, could be considered as a putative candidate gene for the control of sexual traits in grapevine. Co-localisations were found between four QTLs, detected on linkage groups 1, 14, 17 and 18, and the position of the floral organ development genes GIBBERELLIN INSENSITIVE1, FRUITFULL, LEAFY and AGAMOUS. Our results demonstrate that the sex determinism locus also determines both flower and inflorescence morphological traits.

  15. First detection of the presence of naturally occurring grapevine downy mildew in the field by a fluorescence-based method.

    PubMed

    Latouche, Gwendal; Debord, Christian; Raynal, Marc; Milhade, Charlotte; Cerovic, Zoran G

    2015-10-01

    Early detection of fungal pathogen presence in the field would help to better time or avoid some of the fungicide treatments used to prevent crop production losses. We recently introduced a new phytoalexin-based method for a non-invasive detection of crop diseases using their fluorescence. The causal agent of grapevine downy mildew, Plasmopara viticola, induces the synthesis of stilbenoid phytoalexins by the host, Vitis vinifera, early upon infection. These stilbenoids emit violet-blue fluorescence under UV light. A hand-held solid-state UV-LED-based field fluorimeter, named Multiplex 330, was used to measure stilbenoid phytoalexins in a vineyard. It allowed us to non-destructively detect and monitor the naturally occurring downy mildew infections on leaves in the field.

  16. Wind Power Forecasting techniques in complex terrain: ANN vs. ANN-CFD hybrid approach

    NASA Astrophysics Data System (ADS)

    Castellani, Francesco; Astolfi, Davide; Mana, Matteo; Burlando, Massimiliano; Meißner, Cathérine; Piccioni, Emanuele

    2016-09-01

    Due to technology developments, renewable energies are becoming competitive against fossil sources and the number of wind farms is growing, which have to be integrated into power grids. Therefore, accurate power forecast is needed and often operators are charged with penalties in case of imbalance. Yet, wind is a stochastic and very local phenomenon, and therefore hard to predict. It has a high variability in space and time and wind power forecast is challenging. Statistical methods, as Artificial Neural Networks (ANN), are often employed for power forecasting, but they have some shortcomings: they require data sets over several years and are not able to capture tails of wind power distributions. In this work a pure ANN power forecast is compared against a hybrid method, based on the combination of ANN and a physical method using computational fluid dynamics (CFD). The validation case is a wind farm sited in southern Italy in a very complex terrain, with a wide spread turbine layout.

  17. Proteomic analysis of grapevine resistance induced by Trichoderma harzianum T39 reveals specific defence pathways activated against downy mildew

    PubMed Central

    Perazzolli, Michele

    2012-01-01

    Downy mildew is caused by the oomycete Plasmopara viticola and is one of the most serious diseases of grapevine. The beneficial microorganism Trichoderma harzianum T39 (T39) has previously been shown to induce plant-mediated resistance and to reduce the severity of downy mildew in susceptible grapevines. In order to better understand the cellular processes associated with T39-induced resistance, the proteomic and histochemical changes activated by T39 in grapevine were investigated before and 1 day after P. viticola inoculation. A comprehensive proteomic analysis of T39-induced resistance in grapevine was performed using an eight-plex iTRAQ protocol, resulting in the identification and quantification of a total of 800 proteins. Most of the proteins directly affected by T39 were found to be involved in signal transduction, indicating activation of a complete microbial recognition machinery. Moreover, T39-induced resistance was associated with rapid accumulation of reactive oxygen species and callose at infection sites, as well as changes in abundance of proteins involved in response to stress and redox balance, indicating an active defence response to downy mildew. On the other hand, proteins affected by P. viticola in control plants mainly decreased in abundance, possibly reflecting the establishment of a compatible interaction. Finally, the high-throughput iTRAQ protocol allowed de novo peptide sequencing, which will be used to improve annotation of the Vitis vinifera cv. Pinot Noir proteome. PMID:23105132

  18. Genetic signals of demographic expansion in Downy Woodpecker (Picoides pubescens) after the last North American glacial maximum.

    PubMed

    Pulgarín-R, Paulo C; Burg, Theresa M

    2012-01-01

    The glacial cycles of the Pleistocene have been recognized as important, large-scale historical processes that strongly influenced the demographic patterns and genetic structure of many species. Here we present evidence of a postglacial expansion for the Downy Woodpecker (Picoides pubescens), a common member of the forest bird communities in North America with a continental distribution. DNA sequences from the mitochondrial tRNA-Lys, and ATPase 6 and 8 genes, and microsatellite data from seven variable loci were combined with a species distribution model (SDM) to infer possible historical scenarios for this species after the last glacial maximum. Analyses of Downy Woodpeckers from 23 geographic areas suggested little differentiation, shallow genealogical relationships, and limited population structure across the species' range. Microsatellites, which have higher resolution and are able to detect recent differences, revealed two geographic groups where populations along the eastern edge of the Rocky Mountains (Montana, Utah, Colorado, and southern Alberta) were genetically isolated from the rest of the sampled populations. Mitochondrial DNA, an important marker to detect historical patterns, recovered only one group. However, populations in Idaho and southeast BC contained high haplotype diversity and, in general were characterized by the absence of the most common mtDNA haplotype. The SDM suggested several areas in the southern US as containing suitable Downy Woodpecker habitat during the LGM. The lack of considerable geographic structure and the starburst haplotype network, combined with several population genetic tests, suggest a scenario of demographic expansion during the last part of Pleistocene and early Holocene.

  19. Genetic Signals of Demographic Expansion in Downy Woodpecker (Picoides pubescens) after the Last North American Glacial Maximum

    PubMed Central

    Pulgarín-R, Paulo C.; Burg, Theresa M.

    2012-01-01

    The glacial cycles of the Pleistocene have been recognized as important, large-scale historical processes that strongly influenced the demographic patterns and genetic structure of many species. Here we present evidence of a postglacial expansion for the Downy Woodpecker (Picoides pubescens), a common member of the forest bird communities in North America with a continental distribution. DNA sequences from the mitochondrial tRNA-Lys, and ATPase 6 and 8 genes, and microsatellite data from seven variable loci were combined with a species distribution model (SDM) to infer possible historical scenarios for this species after the last glacial maximum. Analyses of Downy Woodpeckers from 23 geographic areas suggested little differentiation, shallow genealogical relationships, and limited population structure across the species’ range. Microsatellites, which have higher resolution and are able to detect recent differences, revealed two geographic groups where populations along the eastern edge of the Rocky Mountains (Montana, Utah, Colorado, and southern Alberta) were genetically isolated from the rest of the sampled populations. Mitochondrial DNA, an important marker to detect historical patterns, recovered only one group. However, populations in Idaho and southeast BC contained high haplotype diversity and, in general were characterized by the absence of the most common mtDNA haplotype. The SDM suggested several areas in the southern US as containing suitable Downy Woodpecker habitat during the LGM. The lack of considerable geographic structure and the starburst haplotype network, combined with several population genetic tests, suggest a scenario of demographic expansion during the last part of Pleistocene and early Holocene. PMID:22792306

  20. ANN-implemented robust vision model

    NASA Astrophysics Data System (ADS)

    Teng, Chungte; Ligomenides, Panos A.

    1991-02-01

    A robust vision model has been developed and implemented with a self-organizing/unsupervised artificial neural network (ANN) classifier-KART which is a novel hybrid model of a modified Kohonen''s feature map and the Carpenter/Grossberg''s ART architecture. The six moment invariants have been mapped onto a 7-dimensional unit hypersphere and have been applied to the KART classifier. In this paper the KART model will be presented. The non-adaptive neural implementations on the image processing and the moment invariant feature extraction will be discussed. In addition the simulation results that illustrate the capabilities of this model will also be provided. 1.

  1. Downy mildew disease promotes the colonization of romaine lettuce by Escherichia coli O157:H7 and Salmonella enterica.

    PubMed

    Simko, Ivan; Zhou, Yaguang; Brandl, Maria T

    2015-02-04

    Downy mildew, a plant disease caused by the oomycete Bremia lactucae, is endemic in many lettuce-growing regions of the world. Invasion by plant pathogens may create new portals and opportunities for microbial colonization of plants. The occurrence of outbreaks of Escherichia coli O157:H7 (EcO157) and Salmonella enterica Typhimurium (S. Typhimurium) infections linked to lettuce prompted us to investigate the role of downy mildew in the colonization of romaine lettuce by these human pathogens under controlled laboratory conditions. Whereas both EcO157 and S. Typhimurium population sizes increased 10(2)-fold on healthy leaf tissue under conditions of warm temperature and free water on the leaves, they increased by 10(5)-fold in necrotic lesions caused by B. lactucae. Confocal microscopy of GFP-EcO157 in the necrotic tissue confirmed its massive population density and association with the oomycete hyphae. Multiplication of EcO157 in the diseased tissue was significantly lower in the RH08-0464 lettuce line, which has a high level of resistance to downy mildew than in the more susceptible cultivar Triple Threat. qRT-PCR quantification of expression of the plant basal immunity gene PR-1, revealed that this gene had greater transcriptional activity in line RH08-0464 than in cultivar Triple Threat, indicating that it may be one of the factors involved in the differential growth of the human pathogen in B. lactucae lesions between the two lettuce accessions. Additionally, downy mildew disease had a significant effect on the colonization of EcO157 at high relative humidity (RH 90-100%) and on its persistence at lower RH (65-75%). The latter conditions, which promoted overall dryness of the lettuce leaf surface, allowed for only 0.0011% and 0.0028% EcO157 cell survival in healthy and chlorotic tissue, respectively, whereas 1.58% of the cells survived in necrotic tissue. Our results indicate that downy mildew significantly alters the behavior of enteric pathogens in the

  2. A new LL3 chondrite, Allan Hills A79003, and observations on matrices in ordinary chondrites

    NASA Technical Reports Server (NTRS)

    Scott, E. R. D.; Taylor, G. J.; Maggiore, P.

    1982-01-01

    Allan Hills A79003 is an LL3 chondrite with a petrologic subtype of 3.4 + or - 0.2. Contrary to previous suggestions, it is not paired with other Allan Hills specimens. It contains haxonite, (Fe,Ni)23C6; shock-melted, 'fizzed' metal-troilite intergrowths; and translucent, glassy-looking Huss matrix (fine-grained, Fe-rich silicate matrix), in addition to the normal opaque and recrystallized varieties of Huss matrix. Some chondrules are partly coated with opaque matrix, others with translucent matrix. Translucent matrix is more uniform in composition and contains less S, CaO and FeO and more MgO than the opaque variety. Both kinds of matrix rimmed chondrules before consolidation of the meteorite.

  3. Allan C. Gotlib, DC, CM: A worthy Member of the Order of Canada.

    PubMed

    Brown, Douglas M

    2016-03-01

    On June 29, 2012, His Excellency the Right Honourable David Johnston, Governor General of Canada, announced 70 new appointments to the Order of Canada. Among them was Dr. Allan Gotlib, who was subsequently installed as a Member of the Order of Canada, in recognition of his contributions to advancing research in the chiropractic profession and its inter-professional integration. This paper attempts an objective view of his career, to substantiate the accomplishments that led to Dr. Gotlib receiving Canada's highest civilian honour.

  4. Cosmic-ray-produced Cl-36 and Mn-53 in Allan Hills-77 meteorites

    NASA Technical Reports Server (NTRS)

    Nishiizumi, K.; Murrell, M. T.; Arnold, J. R.; Finkel, R. C.; Elmore, D.; Ferraro, R. D.; Gove, H. E.

    1981-01-01

    Cosmic-ray-produced Mn-53 has been determined by neutron activation in nine Allan Hills-77 meteorites. Additionally, Cl-36 has been measured in seven of these objects using tandem accelerator mass spectrometry. These results, along with C-14 and Al-26 concentrations determined elsewhere, yield terrestrial ages ranging from 10,000 to 700,000 years. Weathering was not found to result in Mn-53 loss.

  5. Development and dissection of diagnostic SNP markers for the downy mildew resistance genes PlArg and Pl8 and maker-assisted gene pyramiding in sunflower (Helianthus annuus L.)

    USDA-ARS?s Scientific Manuscript database

    Downy mildew, which is caused by fungus Plasmopara halstedii (Farl.) Berlese & de Toni, is one of the most important diseases that affect sunflower production globally. Two downy mildew resistance genes, PlArg and Pl8, were discovered in the late 1980s. Over two decades, PlArg is still effective aga...

  6. An Overview of ANN Application in the Power Industry

    NASA Technical Reports Server (NTRS)

    Niebur, D.

    1995-01-01

    The paper presents a survey on the development and experience with artificial neural net (ANN) applications for electric power systems, with emphasis on operational systems. The organization and constraints of electric utilities are reviewed, motivations for investigating ANN are identified, and a current assessment is given from the experience of 2400 projects using ANN for load forecasting, alarm processing, fault detection, component fault diagnosis, static and dynamic security analysis, system planning, and operation planning.

  7. On the Design of Attitude-Heading Reference Systems Using the Allan Variance.

    PubMed

    Hidalgo-Carrió, Javier; Arnold, Sascha; Poulakis, Pantelis

    2016-04-01

    The Allan variance is a method to characterize stochastic random processes. The technique was originally developed to characterize the stability of atomic clocks and has also been successfully applied to the characterization of inertial sensors. Inertial navigation systems (INS) can provide accurate results in a short time, which tend to rapidly degrade in longer time intervals. During the last decade, the performance of inertial sensors has significantly improved, particularly in terms of signal stability, mechanical robustness, and power consumption. The mass and volume of inertial sensors have also been significantly reduced, offering system-level design and accommodation advantages. This paper presents a complete methodology for the characterization and modeling of inertial sensors using the Allan variance, with direct application to navigation systems. Although the concept of sensor fusion is relatively straightforward, accurate characterization and sensor-information filtering is not a trivial task, yet they are essential for good performance. A complete and reproducible methodology utilizing the Allan variance, including all the intermediate steps, is described. An end-to-end (E2E) process for sensor-error characterization and modeling up to the final integration in the sensor-fusion scheme is explained in detail. The strength of this approach is demonstrated with representative tests on novel, high-grade inertial sensors. Experimental navigation results are presented from two distinct robotic applications: a planetary exploration rover prototype and an autonomous underwater vehicle (AUV).

  8. Measurements of Ultra-Stable Oscillator (USO) Allan Deviations in Space

    NASA Technical Reports Server (NTRS)

    Enzer, Daphna G.; Klipstein, William M.; Wang, Rabi T.; Dunn, Charles E.

    2013-01-01

    Researchers have used data from the GRAIL mission to the Moon to make the first in-flight verification of ultra-stable oscillators (USOs) with Allan deviation below 10 13 for 1-to-100-second averaging times. USOs are flown in space to provide stable timing and/or navigation signals for a variety of different science and programmatic missions. The Gravity Recovery and Interior Laboratory (GRAIL) mission is flying twin spacecraft, each with its own USO and with a Ka-band crosslink used to measure range fluctuations. Data from this crosslink can be combined in such a way as to give the relative time offsets of the two spacecrafts USOs and to calculate the Allan deviation to describe the USOs combined performance while orbiting the Moon. Researchers find the first direct in-space Allan deviations below 10(exp -13) for 1-to-100-second averaging times comparable to pre-launch data, and better than measurements from ground tracking of an X-band carrier coherent with the USO. Fluctuations in Earth s atmosphere limit measurement performance in direct-to-Earth links. Inflight USO performance verification was also performed for GRAIL s parent mission, the Gravity Recovery and Climate Experiment (GRACE), using both Kband and Ka-band crosslinks.

  9. Estimating the Allan variance in the presence of long periods of missing data and outliers

    NASA Astrophysics Data System (ADS)

    Sesia, Ilaria; Tavella, Patrizia

    2008-12-01

    The ability of the Allan variance (AVAR) to identify and estimate the typical clock noise is widely accepted, and its use is recommended by international standards. Recently, a time-varying version called Dynamic Allan variance (DAVAR) was suggested and exploited. Currently, the AVAR is commonly used in applications to space and satellite systems, in particular in monitoring the clocks of the Global Positioning System, and also in the framework of the European project Galileo. In these applications stability estimation, either AVAR or DAVAR (or other similar variances), presents some peculiar aspects which are not commonly encountered when the clock data are measured in a laboratory. In particular, data from space clocks may typically present outliers and missing values. Hence, special attention has to be paid when dealing with such experimental measurements. In this work we propose an estimation algorithm and its implementation in a robust software code (in MATLAB® language) able to estimate the AVAR in the case of missing data, unequally spaced data, outliers, and with long periods of missing observation, so that the Allan variance estimates turn out unbiased and with the maximum use of all the available data.

  10. Host-induced gene silencing inhibits the biotrophic pathogen causing downy mildew of lettuce.

    PubMed

    Govindarajulu, Manjula; Epstein, Lynn; Wroblewski, Tadeusz; Michelmore, Richard W

    2015-09-01

    Host-induced gene silencing (HIGS) is an RNA interference-based approach in which small interfering RNAs (siRNAs) are produced in the host plant and subsequently move into the pathogen to silence pathogen genes. As a proof-of-concept, we generated stable transgenic lettuce plants expressing siRNAs targeting potentially vital genes of Bremia lactucae, a biotrophic oomycete that causes downy mildew, the most important disease of lettuce worldwide. Transgenic plants, expressing inverted repeats of fragments of either the Highly Abundant Message #34 (HAM34) or Cellulose Synthase (CES1) genes of B. lactucae, specifically suppressed expression of these genes, resulting in greatly reduced growth and inhibition of sporulation of B. lactucae. This demonstrates that HIGS can provide effective control of B. lactucae in lettuce; such control does not rely on ephemeral resistance conferred by major resistance genes and therefore offers new opportunities for durable control of diverse diseases in numerous crops. © 2014 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

  11. Spatial dissection of the Arabidopsis thaliana transcriptional response to downy mildew using Fluorescence Activated Cell Sorting

    PubMed Central

    Coker, Timothy L. R.; Cevik, Volkan; Beynon, Jim L.; Gifford, Miriam L.

    2015-01-01

    Changes in gene expression form a crucial part of the plant response to infection. In the last decade, whole-leaf expression profiling has played a valuable role in identifying genes and processes that contribute to the interactions between the model plant Arabidopsis thaliana and a diverse range of pathogens. However, with some pathogens such as downy mildew caused by the biotrophic oomycete pathogen Hyaloperonospora arabidopsidis (Hpa), whole-leaf profiling may fail to capture the complete Arabidopsis response encompassing responses of non-infected as well as infected cells within the leaf. Highly localized expression changes that occur in infected cells may be diluted by the comparative abundance of non-infected cells. Furthermore, local and systemic Hpa responses of a differing nature may become conflated. To address this we applied the technique of Fluorescence Activated Cell Sorting (FACS), typically used for analyzing plant abiotic responses, to the study of plant-pathogen interactions. We isolated haustoriated (Hpa-proximal) and non-haustoriated (Hpa-distal) cells from infected seedling samples using FACS, and measured global gene expression. When compared with an uninfected control, 278 transcripts were identified as significantly differentially expressed, the vast majority of which were differentially expressed specifically in Hpa-proximal cells. By comparing our data to previous, whole organ studies, we discovered many highly locally regulated genes that can be implicated as novel in the Hpa response, and that were uncovered for the first time using our sensitive FACS technique. PMID:26217372

  12. Control of litchi downy blight by zeamines produced by Dickeya zeae

    PubMed Central

    Liao, Lisheng; Zhou, Jianuan; Wang, Huishan; He, Fei; Liu, Shiyin; Jiang, Zide; Chen, Shaohua; Zhang, Lian-Hui

    2015-01-01

    Zeamines (ZMS), a class of polyamine-polyketide-nonribosomal peptide produced by bacterial isolate Dickeya zeae, were shown recently to be potent antibiotics against some bacterial pathogens. In this study, the results indicated that ZMS showed antifungal activity against Peronophythora litchii and other fungal pathogens. The activity of ZMS against the oomycete pathogen P. litchi, which causes the devastating litchi downy blight, was further investigated under in vitro and in vivo conditions. ZMS displayed potent inhibitory activity against the mycelial growth and sporangia germination of P. litchii. At a concentration of 2 μg/mL, about 99% of the sporangia germination was inhibited. Scanning electron microscopy and transmission electron microscopy analyses showed that treatment with ZMS could cause substantial damages to the oomycete endomembrane system. Furthermore, treatment of litchi fruits with ZMS solution significantly (P < 0.05) reduced the fruits decay and peel browning caused by P. litchii infection during storage at 28 °C. Taken together, our results provide useful clues on the antifungal mechanisms of ZMS, and highlight the promising potentials of ZMS as a fungicide, which in particular, may be useful for prevention and control of litchi fruits decay and browning caused by P. litchii infection during storage and transportation. PMID:26499339

  13. Abiotic stresses affect Trichoderma harzianum T39-induced resistance to downy mildew in grapevine.

    PubMed

    Roatti, Benedetta; Perazzolli, Michele; Gessler, Cesare; Pertot, Ilaria

    2013-12-01

    Enhancement of plant defense through the application of resistance inducers seems a promising alternative to chemical fungicides for controlling crop diseases but the efficacy can be affected by abiotic factors in the field. Plants respond to abiotic stresses with hormonal signals that may interfere with the mechanisms of induced systemic resistance (ISR) to pathogens. In this study, we exposed grapevines to heat, drought, or both to investigate the effects of abiotic stresses on grapevine resistance induced by Trichoderma harzianum T39 (T39) to downy mildew. Whereas the efficacy of T39-induced resistance was not affected by exposure to heat or drought, it was significantly reduced by combined abiotic stresses. Decrease of leaf water potential and upregulation of heat-stress markers confirmed that plants reacted to abiotic stresses. Basal expression of defense-related genes and their upregulation during T39-induced resistance were attenuated by abiotic stresses, in agreement with the reduced efficacy of T39. The evidence reported here suggests that exposure of crops to abiotic stress should be carefully considered to optimize the use of resistance inducers, especially in view of future global climate changes. Expression analysis of ISR marker genes could be helpful to identify when plants are responding to abiotic stresses, in order to optimize treatments with resistance inducers in field.

  14. Soft selective sweeps in fungicide resistance evolution: recurrent mutations without fitness costs in grapevine downy mildew.

    PubMed

    Delmas, Chloé E L; Dussert, Yann; Delière, Laurent; Couture, Carole; Mazet, Isabelle D; Richart Cervera, Sylvie; Delmotte, François

    2017-04-01

    Adaptation produces hard or soft selective sweeps depending on the supply of adaptive genetic polymorphism. The evolution of pesticide resistance in parasites is a striking example of rapid adaptation that can shed light on selection processes. Plasmopara viticola, which causes grapevine downy mildew, forms large populations, in which resistance has rapidly evolved due to excessive fungicide use. We investigated the pathways by which fungicide resistance has evolved in this plant pathogen, to determine whether hard or soft selective sweeps were involved. An analysis of nucleotide polymorphism in 108 field isolates from the Bordeaux region revealed recurrent mutations of cytb and CesA3 conferring resistance to quinone outside inhibiting (QoI) and carboxylic acid amide (CAA) fungicides, respectively. Higher levels of genetic differentiation were observed for nucleotide positions involved in resistance than for neutral microsatellites, consistent with local adaptation of the pathogen to fungicide treatments. No hitchhiking was found between selected sites and neighbouring polymorphisms in cytb and CesA3, confirming multiple origins of resistance alleles. We assessed resistance costs, by evaluating the fitness of the 108 isolates through measurements of multiple quantitative pathogenicity traits under controlled conditions. No significant differences were found between sensitive and resistant isolates, suggesting that fitness costs may be absent or negligible. Our results indicate that the rapid evolution of fungicide resistance in P. viticola has involved a soft sweep. © 2017 John Wiley & Sons Ltd.

  15. Use of suppression subtractive hybridization to identify downy mildew genes expressed during infection of Arabidopsis thaliana.

    PubMed

    Bittner-Eddy, Peter D; Allen, Rebecca L; Rehmany, Anne P; Birch, Paul; Beynon, Jim L

    2003-11-01

    SUMMARY Peronospora parasitica is an obligate biotrophic oomycete that causes downy mildew in Arabidopsis thaliana and Brassica species. Our goal is to identify P. parasitica (At) genes that are involved in pathogenicity. We used suppression subtractive hybridization (SSH) to generate cDNA libraries enriched for in planta-expressed parasite genes and up-regulated host genes. A total of 1345 clones were sequenced representing cDNA fragments from 25 putative P. parasitica (At) genes (Ppat 1-25) and 618 Arabidopsis genes. Analyses of expression patterns showed that 15 Ppats were expressed only in planta. Eleven Ppats encoded peptides with homology (BlastP values < 1e-05) to proteins with roles in membrane or cell wall biosynthesis, amino acid metabolism, osmoregulation, cation transport, phosphorylation or protein secretion. The other 14 represent potentially novel oomycete genes with none having homologues in an extensive Phytophthora species EST database. A full-length sequence was obtained for four Ppats and each encoded small cysteine-rich proteins with amino-terminal signal peptide sequences. These results demonstrate the utility of SSH in obtaining novel in planta-expressed genes from P. parasitica (At) that complements other gene discovery approaches such as EST sequencing.

  16. 77 FR 75629 - Pramaggiore, Anne R.; Notice of Filing

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-21

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission Pramaggiore, Anne R.; Notice of Filing Take notice that on December 14, 2012, Anne R. Pramaggiore submitted for filing, an application for authority to hold interlocking...

  17. Anne Frank: A Content-Based Research Class.

    ERIC Educational Resources Information Center

    Rosser, Carl

    1995-01-01

    Examines a content-based English-as-a-Second-Language (ESL) research class focusing on Anne Frank because of the dramatic story of her life and the literary quality of her diary's contents. The students were required to write about the character of Anne Frank and to use the same sources for their research journals. The course was a vehicle for…

  18. Notes from Girl X: Anne Frank at the Millennium.

    ERIC Educational Resources Information Center

    Levitsky, Holli

    2002-01-01

    Considers if Anne Frank's diary is still viable or if it has been too far removed from its original author or its original context. Concludes that the book "Anne Frank and Me" offers historical accuracies about the Holocaust while placing its readers squarely at the millennium. (SG)

  19. Anne Fisher and 18th-Century Literacy Training.

    ERIC Educational Resources Information Center

    Mitchell, Linda C.

    Anne Fisher, a pioneer in British education, was one of the few females in the 18th century to publish a significant grammatical work, one that was used widely in classrooms. This paper highlights Anne Fisher's historic achievement and argues from the discipline of the history of rhetoric that the two verbal disciplines of rhetoric and grammar are…

  20. Ann Eliza Young: A Nineteenth Century Champion of Women's Rights.

    ERIC Educational Resources Information Center

    Cullen, Jack B.

    Concentrating on the efforts of such nineteenth century women's rights advocates as Susan B. Anthony and Elizabeth Cady Stanton, communication researchers have largely overlooked the contributions made to the cause by Ann Eliza Young. The nineteenth wife of Mormon leader Brigham Young, Ann Eliza Young left her husband and took to the speaker's…

  1. An ANN That Applies Pragmatic Decision on Texts.

    ERIC Educational Resources Information Center

    Aretoulaki, Maria; Tsujii, Jun-ichi

    A computer-based artificial neural network (ANN) that learns to classify sentences in a text as important or unimportant is described. The program is designed to select the sentences that are important enough to be included in composition of an abstract of the text. The ANN is embedded in a conventional symbolic environment consisting of…

  2. Anne Frank: One of Hundreds of Thousands. [Lesson Plan].

    ERIC Educational Resources Information Center

    2002

    Anne Frank was one of the hundreds of thousands of Jewish children who died in the Holocaust. In that sense, she is not unique; however, through the very ordinary act of writing a diary, through her youthful wisdom and budding literary talent, Anne remains today an extraordinary "symbol of the lost promise of the children who died in the…

  3. Allan Variance Computed in Space Domain: Definition and Application to InSAR Data to Characterize Noise and Geophysical Signal.

    PubMed

    Cavalié, Olivier; Vernotte, François

    2016-04-01

    The Allan variance was introduced 50 years ago for analyzing the stability of frequency standards. In addition to its metrological interest, it may be also considered as an estimator of the large trends of the power spectral density (PSD) of frequency deviation. For instance, the Allan variance is able to discriminate different types of noise characterized by different power laws in the PSD. The Allan variance was also used in other fields than time and frequency metrology: for more than 20 years, it has been used in accelerometry, geophysics, geodesy, astrophysics, and even finances. However, it seems that up to now, it has been exclusively applied for time series analysis. We propose here to use the Allan variance on spatial data. Interferometric synthetic aperture radar (InSAR) is used in geophysics to image ground displacements in space [over the synthetic aperture radar (SAR) image spatial coverage] and in time thanks to the regular SAR image acquisitions by dedicated satellites. The main limitation of the technique is the atmospheric disturbances that affect the radar signal while traveling from the sensor to the ground and back. In this paper, we propose to use the Allan variance for analyzing spatial data from InSAR measurements. The Allan variance was computed in XY mode as well as in radial mode for detecting different types of behavior for different space-scales, in the same way as the different types of noise versus the integration time in the classical time and frequency application. We found that radial Allan variance is the more appropriate way to have an estimator insensitive to the spatial axis and we applied it on SAR data acquired over eastern Turkey for the period 2003-2011. Spatial Allan variance allowed us to well characterize noise features, classically found in InSAR such as phase decorrelation producing white noise or atmospheric delays, behaving like a random walk signal. We finally applied the spatial Allan variance to an InSAR time

  4. Myelination Delay and Allan-Herndon-Dudley Syndrome Caused by a Novel Mutation in the SLC16A2 Gene.

    PubMed

    La Piana, Roberta; Vanasse, Michel; Brais, Bernard; Bernard, Genevieve

    2015-09-01

    Allan-Herndon-Dudley syndrome is an X-linked disease caused by mutations in the solute carrier family 16 member 2 (SLC16A2) gene. As SLC16A2 encodes the monocarboxylate transporter 8 (MCT8), a thyroid hormone transporter, patients with Allan-Herndon-Dudley syndrome present a specific altered thyroid hormone profile. Allan-Herndon-Dudley syndrome has been associated with myelination delay on the brain magnetic resonance imaging (MRI) of affected subjects. We report a patient with Allan-Herndon-Dudley syndrome characterized by developmental delay, hypotonia, and delayed myelination caused by a novel SLC16A2 mutation (p.L291R). The thyroid hormones profile in our patient was atypical for Allan-Herndon-Dudley syndrome. The follow-up examinations showed that the progression of the myelination was not accompanied by a clinical improvement. Our paper suggests that SLC16A2 mutations should be investigated in patients with myelination delay even when the thyroid function is not conclusively altered.

  5. Applications of artificial neural networks (ANNs) in food science.

    PubMed

    Huang, Yiqun; Kangas, Lars J; Rasco, Barbara A

    2007-01-01

    Artificial neural networks (ANNs) have been applied in almost every aspect of food science over the past two decades, although most applications are in the development stage. ANNs are useful tools for food safety and quality analyses, which include modeling of microbial growth and from this predicting food safety, interpreting spectroscopic data, and predicting physical, chemical, functional and sensory properties of various food products during processing and distribution. ANNs hold a great deal of promise for modeling complex tasks in process control and simulation and in applications of machine perception including machine vision and electronic nose for food safety and quality control. This review discusses the basic theory of the ANN technology and its applications in food science, providing food scientists and the research community an overview of the current research and future trend of the applications of ANN technology in the field.

  6. Applications of Artificial Neural Networks (ANNs) in Food Science

    SciTech Connect

    HUang, Yiqun; Kangas, Lars J.; Rasco, Barbara A.

    2007-02-01

    Abstract Artificial neural networks (ANNs) have been applied in almost every aspect of food science over the past two decade, although most applications are in the development stage. ANNs are useful tools for food safety and quality analyses, which include modeling of microbial growth and from this predicting food safety, interpreting spectroscopic data, and predicting physical, chemical, functional and sensory properties of various food products during processing and distribution. ANNs have a great deal of promise for modeling complex tasks in process control and simulation, and in applications of machine perception including machine vision and the electronic nose for food safety and quality control. This review discusses the basic theory of the ANN technology and its applications in food science, providing food scientists and the research community an overview of the current research and future trend of the applications of ANN technology in this field.

  7. Which Morphological Characteristics Are Most Influenced by the Host Matrix in Downy Mildews? A Case Study in Pseudoperonospora cubensis

    PubMed Central

    Runge, Fabian; Ndambi, Beninweck; Thines, Marco

    2012-01-01

    Before the advent of molecular phylogenetics, species concepts in the downy mildews, an economically important group of obligate biotrophic oomycete pathogens, have mostly been based upon host range and morphology. While molecular phylogenetic studies have confirmed a narrow host range for many downy mildew species, others, like Pseudoperonospora cubensis affect even different genera. Although often morphological differences were found for new, phylogenetically distinct species, uncertainty prevails regarding their host ranges, especially regarding related plants that have been reported as downy mildew hosts, but were not included in the phylogenetic studies. In these cases, the basis for deciding if the divergence in some morphological characters can be deemed sufficient for designation as separate species is uncertain, as observed morphological divergence could be due to different host matrices colonised. The broad host range of P. cubensis (ca. 60 host species) renders this pathogen an ideal model organism for the investigation of morphological variations in relation to the host matrix and to evaluate which characteristics are best indicators for conspecificity or distinctiveness. On the basis of twelve morphological characterisitcs and a set of twelve cucurbits from five different Cucurbitaceae tribes, including the two species, Cyclanthera pedata and Thladiantha dubia, hitherto not reported as hosts of P. cubensis, a significant influence of the host matrix on pathogen morphology was found. Given the high intraspecific variation of some characteristics, also their plasticity has to be taken into account. The implications for morphological species determination and the confidence limits of morphological characteristics are discussed. For species delimitations in Pseudoperonospora it is shown that the ratio of the height of the first ramification to the sporangiophore length, ratio of the longer to the shorter ultimate branchlet, and especially the length and

  8. De novo Transcriptome Sequencing to Dissect Candidate Genes Associated with Pearl Millet-Downy Mildew (Sclerospora graminicola Sacc.) Interaction

    PubMed Central

    Kulkarni, Kalyani S.; Zala, Harshvardhan N.; Bosamia, Tejas C.; Shukla, Yogesh M.; Kumar, Sushil; Fougat, Ranbir S.; Patel, Mruduka S.; Narayanan, Subhash; Joshi, Chaitanya G.

    2016-01-01

    Understanding the plant-pathogen interactions is of utmost importance to design strategies for minimizing the economic deficits caused by pathogens in crops. With an aim to identify genes underlying resistance to downy mildew, a major disease responsible for productivity loss in pearl millet, transcriptome analysis was performed in downy mildew resistant and susceptible genotypes upon infection and control on 454 Roche NGS platform. A total of ~685 Mb data was obtained with 1 575 290 raw reads. The raw reads were pre-processed into high-quality (HQ) reads making to ~82% with an average of 427 bases. The assembly was optimized using four assemblers viz. Newbler, MIRA, CLC and Trinity, out of which MIRA with a total of 14.10 Mb and 90118 transcripts proved to be the best for assembling reads. Differential expression analysis depicted 1396 and 936 and 1000 and 1591 transcripts up and down regulated in resistant inoculated/resistant control and susceptible inoculated/susceptible control respectively with a common of 3644 transcripts. The pathways for secondary metabolism, specifically the phenylpropanoid pathway was up-regulated in resistant genotype. Transcripts up-regulated as a part of defense response included classes of R genes, PR proteins, HR induced proteins and plant hormonal signaling transduction proteins. The transcripts for skp1 protein, purothionin, V type proton ATPase were found to have the highest expression in resistant genotype. Ten transcripts, selected on the basis of their involvement in defense mechanism were validated with qRT-PCR and showed positive co-relation with transcriptome data. Transcriptome analysis evoked potentials of hypersensitive response and systemic acquired resistance as possible mechanism operating in defense mechanism in pearl millet against downy mildew infection. PMID:27446100

  9. Pl(17) is a novel gene independent of known downy mildew resistance genes in the cultivated sunflower (Helianthus annuus L.).

    PubMed

    Qi, L L; Long, Y M; Jan, C C; Ma, G J; Gulya, T J

    2015-04-01

    Pl 17, a novel downy mildew resistance gene independent of known downy mildew resistance genes in sunflowers, was genetically mapped to linkage group 4 of the sunflower genome. Downy mildew (DM), caused by Plasmopara halstedii (Farl.). Berl. et de Toni, is one of the serious sunflower diseases in the world due to its high virulence and the variability of the pathogen. DM resistance in the USDA inbred line, HA 458, has been shown to be effective against all virulent races of P. halstedii currently identified in the USA. To determine the chromosomal location of this resistance, 186 F 2:3 families derived from a cross of HA 458 with HA 234 were phenotyped for their resistance to race 734 of P. halstedii. The segregation ratio of the population supported that the resistance was controlled by a single dominant gene, Pl 17. Simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) primers were used to identify molecular markers linked to Pl 17. Bulked segregant analysis using 849 SSR markers located Pl 17 to linkage group (LG) 4, which is the first DM gene discovered in this linkage group. An F2 population of 186 individuals was screened with polymorphic SSR and SNP primers from LG4. Two flanking markers, SNP SFW04052 and SSR ORS963, delineated Pl 17 in an interval of 3.0 cM. The markers linked to Pl 17 were validated in a BC3 population. A search for the physical location of flanking markers in sunflower genome sequences revealed that the Pl 17 region had a recombination frequency of 0.59 Mb/cM, which was a fourfold higher recombination rate relative to the genomic average. This region can be considered amenable to molecular manipulation for further map-based cloning of Pl 17.

  10. Effector identification in the lettuce downy mildew Bremia lactucae by massively parallel transcriptome sequencing.

    PubMed

    Stassen, Joost H M; Seidl, Michael F; Vergeer, Pim W J; Nijman, Isaäc J; Snel, Berend; Cuppen, Edwin; Van den Ackerveken, Guido

    2012-09-01

    Lettuce downy mildew (Bremia lactucae) is a rapidly adapting oomycete pathogen affecting commercial lettuce cultivation. Oomycetes are known to use a diverse arsenal of secreted proteins (effectors) to manipulate their hosts. Two classes of effector are known to be translocated by the host: the RXLRs and Crinklers. To gain insight into the repertoire of effectors used by B. lactucae to manipulate its host, we performed massively parallel sequencing of cDNA derived from B. lactucae spores and infected lettuce (Lactuca sativa) seedlings. From over 2.3 million 454 GS FLX reads, 59 618 contigs were assembled representing both plant and pathogen transcripts. Of these, 19 663 contigs were determined to be of B. lactucae origin as they matched pathogen genome sequences (SOLiD) that were obtained from >270 million reads of spore-derived genomic DNA. After correction of cDNA sequencing errors with SOLiD data, translation into protein models and filtering, 16 372 protein models remained, 1023 of which were predicted to be secreted. This secretome included elicitins, necrosis and ethylene-inducing peptide 1-like proteins, glucanase inhibitors and lectins, and was enriched in cysteine-rich proteins. Candidate host-translocated effectors included 78 protein models with RXLR effector features. In addition, we found indications for an unknown number of Crinkler-like sequences. Similarity clustering of secreted proteins revealed additional effector candidates. We provide a first look at the transcriptome of B. lactucae and its encoded effector arsenal. © 2012 THE AUTHORS. MOLECULAR PLANT PATHOLOGY © 2012 BSPP AND BLACKWELL PUBLISHING LTD.

  11. Noble gases in twenty Yamato H-chondrites: Comparison with Allan Hills chondrites and modern falls

    NASA Technical Reports Server (NTRS)

    Loeken, TH.; Scherer, P.; Schultz, L.

    1993-01-01

    Concentration and isotopic composition of noble gases have been measured in 20 H-chrondrites found on the Yamato Mountains ice fields in Antarctica. The distribution of exposure ages as well as of radiogenic He-4 contents is similar to that of H-chrondrites collected at the Allan Hills site. Furthermore, a comparison of the noble gas record of Antarctic H-chrondrites and finds or falls from non-Antarctic areas gives no support to the suggestion that Antarctic H-chrondrites and modern falls derive from differing interplanetary meteorite populations.

  12. The discovery and initial characterization of Allan Hills 81005 - The first lunar meteorite

    NASA Technical Reports Server (NTRS)

    Marvin, U. B.

    1983-01-01

    Antarctic meteorite ALHA81005, discovered in the Allan Hills region of Victoria Land, is a polymict anorthositic breccia which differs from other meteorites in mineralogical and chemical composition but is strikingly similar to lunar highlands soil breccias. The petrologic character and several independent lines of evidence identify ALHA81005 as a meteorite from the moon. Two small clasts of probable mare basalt occur among the highlands lithologies in Thin Section 81005,22. This lunar specimen, which shows relatively minor shock effects, has generated new ideas on the types of planetary samples found on the earth.

  13. Allan C. Gotlib, DC, CM: A worthy Member of the Order of Canada

    PubMed Central

    Brown, Douglas M.

    2016-01-01

    On June 29, 2012, His Excellency the Right Honourable David Johnston, Governor General of Canada, announced 70 new appointments to the Order of Canada. Among them was Dr. Allan Gotlib, who was subsequently installed as a Member of the Order of Canada, in recognition of his contributions to advancing research in the chiropractic profession and its inter-professional integration. This paper attempts an objective view of his career, to substantiate the accomplishments that led to Dr. Gotlib receiving Canada’s highest civilian honour. PMID:27069273

  14. Investigation of Allan variance for determining noise spectral forms with application to microwave radiometry

    NASA Technical Reports Server (NTRS)

    Stanley, William D.

    1994-01-01

    An investigation of the Allan variance method as a possible means for characterizing fluctuations in radiometric noise diodes has been performed. The goal is to separate fluctuation components into white noise, flicker noise, and random-walk noise. The primary means is by discrete-time processing, and the study focused primarily on the digital processes involved. Noise satisfying the requirements was generated by direct convolution, fast Fourier transformation (FFT) processing in the time domain, and FFT processing in the frequency domain. Some of the numerous results obtained are presented along with the programs used in the study.

  15. First report of downy mildew caused by Plasmopara halstedii on black-eyed susan (Rudbeckia fulgida cv. ‘Goldsturm’) in Maryland

    USDA-ARS?s Scientific Manuscript database

    The North American perennial black-eyed Susan (Rudbeckia fulgida cv. ‘Goldsturm’) is an important nursery crop, prized by gardeners and landscapers for its persistent bloom and ease of cultivation. In September 2013 disease symptoms characteristic of downy mildew were observed from multiple plants a...

  16. Screening exotic sorghum germplasm, hybrids and elite lines for resistance to a new virulent pathotype (P6) of Peronsclerospora sorghi causing downy mildew

    USDA-ARS?s Scientific Manuscript database

    A recent outbreak of sorghum downy mildew (SDM) in Texas has led to the discovery of both metalaxyl fungicide resistance and a new pathotype, P6, in the causal organism Peronsclerospora sorghi. New and alternate sources of the host plant resistance are needed for successful management of SDM. To i...

  17. Response of sorghum accessions from Chad and Uganda to natural infection by the downy mildew pathogen, Peronosclerospora sorghi in Mexico and the USA

    USDA-ARS?s Scientific Manuscript database

    In this study, 78 accessions from Chad, West Africa and 20 photoperiod insensitive accessions from Uganda, East Africa were evaluated for downy mildew resistance in Ocotlan, Mexico in 2004 and 2005. Ninety-four of these accessions were also evaluated at two locations in Wharton County, Texas, USA, ...

  18. Genetic modification of European winegrapes with genes from an American wild relative confers resistance to the major diseases powdery and downy mildew

    USDA-ARS?s Scientific Manuscript database

    The two most economically important diseases of grapevine cultivation worldwide are caused by the fungal pathogen powdery mildew (Erysiphe necator syn. Uncinula necator) and the oomycete, downy mildew (Plasmopara viticola). These pathogens, endemic to North America, were introduced into Europe in t...

  19. Non-selective feeding and oviposition behavior of Cryptocephalus trifasciata (Coleoptera: Cerambycidae: Cryptocephalinae), precludes its use as a biological control agent for downy rose myrtle (Rhodomyrtus tomentosa)

    USDA-ARS?s Scientific Manuscript database

    Downy rose myrtle (Rhodomyrtus tomentosa), a southeast Asian native shrub, invades natural areas in Florida and Hawaii where it forms dense, impenetrable thickets. We tested the host affinity and survivorship of a case bearing beetle, Cryptocephalus trifasciata on R. tomentosa and related species. C...

  20. Genotyping-by-sequencing of a bi-parental mapping population segregating for downy mildew resistance in hop (Humulus lupulus L.)

    USDA-ARS?s Scientific Manuscript database

    Breeding for resistance to downy mildew in hop has proved difficult presumably because of the highly quantitative nature of genetic control over expression with environment playing a large role in determining phenotype. We hypothesize that eliminating environmental influences over the expression of...

  1. Genotyping-by-sequencing targeting of a novel downy mildew resistance gene Pl20 from wild Helianthus argophyllus for sunflower (Helianthus annuus L.)

    USDA-ARS?s Scientific Manuscript database

    Downy mildew (DM) caused by Plasmopara halstedii is one of the most destructive diseases in the world that severely impacts sunflower production. Management tools for DM include the destruction of volunteer sunflower plants, fungicides applied as seed treatments, and planting DM-resistant hybrids; t...

  2. Discovery and introgression of the wild sunflower-derived novel downy mildew resistance gene Pl19 in confection sunflower (Helianthus annuus L.)

    USDA-ARS?s Scientific Manuscript database

    Wild Helianthus annuus accession PI 435414 exhibited resistance to downy mildew, which is one of the most destructive diseases to sunflower production globally. Evaluation of the 140 BC1F2:3 families derived from the cross of CMS CONFSCLB1 and PI 435414 against Plasmopara halstedii race 734 revealed...

  3. Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping

    PubMed Central

    Nemri, Adnane; Atwell, Susanna; Tarone, Aaron M.; Huang, Yu S.; Zhao, Keyan; Studholme, David J.; Nordborg, Magnus; Jones, Jonathan D. G.

    2010-01-01

    The model plant Arabidopsis thaliana exhibits extensive natural variation in resistance to parasites. Immunity is often conferred by resistance (R) genes that permit recognition of specific races of a disease. The number of such R genes and their distribution are poorly understood. In this study, we investigated the basis for resistance to the downy mildew agent Hyaloperonospora arabidopsidis ex parasitica (Hpa) in a global sample of A. thaliana. We implemented a combined genome-wide mapping of resistance using populations of recombinant inbred lines and a collection of wild A. thaliana accessions. We tested the interaction between 96 host genotypes collected worldwide and five strains of Hpa. Then, a fraction of the species-wide resistance was genetically dissected using six recently constructed populations of recombinant inbred lines. We found that resistance is usually governed by single dominant R genes that are concentrated in four genomic regions only. We show that association genetics of resistance to diseases such as downy mildew enables increased mapping resolution from quantitative trait loci interval to candidate gene level. Association patterns in quantitative trait loci intervals indicate that the pool of A. thaliana resistance sources against the tested Hpa isolates may be predominantly confined to six RPP (Resistance to Hpa) loci isolated in previous studies. Our results suggest that combining association and linkage mapping could accelerate resistance gene discovery in plants. PMID:20479233

  4. Polymorphic SSR markers for Plasmopara obducens (Peronosporaceae), the newly emergent downy mildew pathogen of Impatiens (Balsaminaceae)1

    PubMed Central

    Salgado-Salazar, Catalina; Rivera, Yazmín; Veltri, Daniel; Crouch, Jo Anne

    2015-01-01

    Premise of the study: Simple sequence repeat (SSR) markers were developed for Plasmopara obducens, the causal agent of the newly emergent downy mildew disease of Impatiens walleriana. Methods and Results: A 202-Mb draft genome assembly was generated from P. obducens using Illumina technology and mined to identify 13,483 SSR motifs. Primers were synthesized for 62 marker candidates, of which 37 generated reliable PCR products. Testing of the 37 markers using 96 P. obducens samples showed 96% of the markers were polymorphic, with 2−6 alleles observed. Observed and expected heterozygosity ranged from 0.000−0.892 and 0.023−0.746, respectively. Just 17 markers were sufficient to identify all multilocus genotypes. Conclusions: These are the first SSR markers available for this pathogen, and one of the first molecular resources. These markers will be useful in assessing variation in pathogen populations and determining the factors contributing to the emergence of destructive impatiens downy mildew disease. PMID:26649270

  5. Effector Polymorphisms of the Sunflower Downy Mildew Pathogen Plasmopara halstedii and Their Use to Identify Pathotypes from Field Isolates.

    PubMed

    Gascuel, Quentin; Bordat, Amandine; Sallet, Erika; Pouilly, Nicolas; Carrere, Sébastien; Roux, Fabrice; Vincourt, Patrick; Godiard, Laurence

    2016-01-01

    The obligate biotroph oomycete Plasmopara halstedii causes downy mildew on sunflower crop, Helianthus annuus. The breakdown of several Pl resistance genes used in sunflower hybrids over the last 25 years came along with the appearance of new Pl. halstedii isolates showing modified virulence profiles. In oomycetes, two classes of effector proteins, key players of pathogen virulence, are translocated into the host: RXLR and CRN effectors. We identified 54 putative CRN or RXLR effector genes from transcriptomic data and analyzed their genetic diversity in seven Pl. halstedii pathotypes representative of the species variability. Pl. halstedii effector genes were on average more polymorphic at both the nucleic and protein levels than random non-effector genes, suggesting a potential adaptive dynamics of pathogen virulence over the last 25 years. Twenty-two KASP (Competitive Allele Specific PCR) markers designed on polymorphic effector genes were genotyped on 35 isolates belonging to 14 Pl. halstedii pathotypes. Polymorphism analysis based on eight KASP markers aims at proposing a determination key suitable to classify the eight multi-isolate pathotypes into six groups. This is the first report of a molecular marker set able to discriminate Pl. halstedii pathotypes based on the polymorphism of pathogenicity effectors. Compared to phenotypic tests handling living spores used until now to discriminate Pl. halstedii pathotypes, this set of molecular markers constitutes a first step in faster pathotype diagnosis of Pl. halstedii isolates. Hence, emerging sunflower downy mildew isolates could be more rapidly characterized and thus, assessment of plant resistance breakdown under field conditions should be improved.

  6. Using Next-Generation Sequencing to Develop Molecular Diagnostics for Pseudoperonospora cubensis, the Cucurbit Downy Mildew Pathogen.

    PubMed

    Withers, S; Gongora-Castillo, E; Gent, D; Thomas, A; Ojiambo, P S; Quesada-Ocampo, L M

    2016-10-01

    Advances in next-generation sequencing (NGS) allow for rapid development of genomics resources needed to generate molecular diagnostics assays for infectious agents. NGS approaches are particularly helpful for organisms that cannot be cultured, such as the downy mildew pathogens, a group of biotrophic obligate oomycetes that infect crops of economic importance. Unlike most downy mildew pathogens that are highly host-specific, Pseudoperonospora cubensis causes disease on a broad range of crops belonging to the family Cucurbitaceae. In this study, we identified candidate diagnostic markers for P. cubensis by comparing NGS data from a diverse panel of P. cubensis and P. humuli isolates, two very closely related oomycete species. P. cubensis isolates from diverse hosts and geographical regions in the United States were selected for sequencing to ensure that candidates were conserved in P. cubensis isolates infecting different cucurbit hosts. Genomic regions unique to and conserved in P. cubensis isolates were identified through bioinformatics. These candidate regions were then validated using PCR against a larger collection of isolates from P. cubensis, P. humuli, and other oomycetes. Overall seven diagnostic markers were found to be specific to P. cubensis. These markers could be used for pathogen diagnostics on infected tissue, or adapted for monitoring airborne inoculum with real-time PCR and spore traps.

  7. The natural thermoluminescence of meteorites. V - Ordinary chondrites at the Allan Hills ice fields

    NASA Technical Reports Server (NTRS)

    Benoit, Paul H.; Sears, Hazel; Sears, Derek W. G.

    1993-01-01

    Natural thermoluminescence (TL) data have been obtained for 167 ordinary chondrites from the ice fields in the vicinity of the Allan Hills in Victoria Land, Antarctica, in order to investigate their thermal and radiation history, pairing, terrestrial age, and concentration mechanisms. Natural TL values for meteorites from the Main ice field are fairly low, while the Farwestern field shows a spread with many values 30-80 krad, suggestive of less than 150-ka terrestrial ages. There appear to be trends in TL levels within individual ice fields which are suggestive of directions of ice movement at these sites during the period of meteorite concentration. These directions seem to be confirmed by the orientations of elongation preserved in meteorite pairing groups. The proportion of meteorites with very low natural TL levels at each field is comparable to that observed at the Lewis Cliff site and for modern non-Antarctic falls and is also similar to the fraction of small perihelia orbits calculated from fireball and fall observations. Induced TL data for meteorites from the Allan Hills confirm trends which show that a select group of H chondrites from the Antarctic experienced a different extraterrestrial thermal history to that of non-Antarctic H chondrites.

  8. The natural thermoluminescence of meteorites. V - Ordinary chondrites at the Allan Hills ice fields

    NASA Technical Reports Server (NTRS)

    Benoit, Paul H.; Sears, Hazel; Sears, Derek W. G.

    1993-01-01

    Natural thermoluminescence (TL) data have been obtained for 167 ordinary chondrites from the ice fields in the vicinity of the Allan Hills in Victoria Land, Antarctica, in order to investigate their thermal and radiation history, pairing, terrestrial age, and concentration mechanisms. Natural TL values for meteorites from the Main ice field are fairly low, while the Farwestern field shows a spread with many values 30-80 krad, suggestive of less than 150-ka terrestrial ages. There appear to be trends in TL levels within individual ice fields which are suggestive of directions of ice movement at these sites during the period of meteorite concentration. These directions seem to be confirmed by the orientations of elongation preserved in meteorite pairing groups. The proportion of meteorites with very low natural TL levels at each field is comparable to that observed at the Lewis Cliff site and for modern non-Antarctic falls and is also similar to the fraction of small perihelia orbits calculated from fireball and fall observations. Induced TL data for meteorites from the Allan Hills confirm trends which show that a select group of H chondrites from the Antarctic experienced a different extraterrestrial thermal history to that of non-Antarctic H chondrites.

  9. STS-127 Crew Visit to Anne Beers Elementary

    NASA Image and Video Library

    2009-09-23

    Thomas Tate, a third grade student at Anne Beers Elementary school, asks a question following a presentation by the crew of STS-127, Thursday, Sept. 24, 2009, in Washington. Photo Credit: (NASA/Paul E. Alers)

  10. Candidate disease resistance genes in sunflower cloned using conserved nucleotide-binding site motifs: genetic mapping and linkage to the downy mildew resistance gene Pl1.

    PubMed

    Gedil, M A; Slabaugh, M B; Berry, S; Johnson, R; Michelmore, R; Miller, J; Gulya, T; Knapp, S J

    2001-04-01

    Disease resistance gene candidates (RGCs) belonging to the nucleotide-binding site (NBS) superfamily have been cloned from numerous crop plants using highly conserved DNA sequence motifs. The aims of this research were to (i) isolate genomic DNA clones for RGCs in cultivated sunflower (Helianthus annuus L.) and (ii) map RGC markers and Pl1, a gene for resistance to downy mildew (Plasmopara halstedii (Farl.) Berl. & de Toni) race 1. Degenerate oligonucleotide primers targeted to conserved NBS DNA sequence motifs were used to amplify RGC fragments from sunflower genomic DNA. PCR products were cloned, sequenced, and assigned to 11 groups. RFLP analyses mapped six RGC loci to three linkage groups. One of the RGCs (Ha-4W2) was linked to Pl1, a downy mildew resistance gene. A cleaved amplified polymorphic sequence (CAPS) marker was developed for Ha-4W2 using gene-specific oligonucleotide primers. Downy mildew susceptible lines (HA89 and HA372) lacked a 276-bp Tsp5091 restriction fragment that was present in downy mildew resistant lines (HA370, 335, 336, 337, 338, and 339). HA370 x HA372 F2 progeny were genotyped for the Ha-4W2 CAPS marker and phenotyped for resistance to downy mildew race 1. The CAPS marker was linked to but did not completely cosegregate with Pl1 on linkage group 8. Ha-4W2 was found to comprise a gene family with at least five members. Although genetic markers for Ha-4W2 have utility for marker-assisted selection, the RGC detected by the CAPS marker has been ruled out as a candidate gene for Pl1. Three of the RGC probes were monomorphic between HA370 and HA372 and still need to be mapped and screened for linkage to disease resistance loci.

  11. Spectrophotometric determination of synthetic colorants using PSO-GA-ANN.

    PubMed

    Benvidi, Ali; Abbasi, Saleheh; Gharaghani, Sajjad; Dehghan Tezerjani, Marzieh; Masoum, Saeed

    2017-04-01

    Four common food colorants, containing tartrazine, sunset yellow, ponceau 4R and methyl orange, are simultaneously quantified without prior chemical separation. In this study, an effective artificial neural network (ANN) method is designed for modeling multicomponent absorbance data with the presence of shifts or changes of peak shapes in spectroscopic analysis. Gradient descent methods such as Levenberg-Marquardt function are usually used to determine the parameters of ANN. However, these methods may provide inappropriate parameters. In this paper, we propose combination of genetic algorithms (GA) and partial swarm optimization (PSO) to optimize parameters of ANN, and then the algorithm is used to process the relationship between the absorbance data and the concentration of analytes. The hybrid algorithm has the benefits of both PSO and GA techniques. The performance of this algorithm is compared to the performance of PSO-ANN, PC-ANN and ANN based Levenberg-Marquardt function. The obtained results revealed that the designed model can accurately determine colorant concentrations in real and synthetic samples. According to the observations, it is clear that the proposed hybrid method is a powerful tool to estimate the concentration of food colorants with a high degree of overlap using nonlinear artificial neural network. Copyright © 2016 Elsevier Ltd. All rights reserved.

  12. Onomastic Mirroring: "The Closing of the American Mind" by Allan Bloom and "Lives on the Boundary" by Mike Rose.

    ERIC Educational Resources Information Center

    Heit, Karl

    Although Allan Bloom in "The Closing of the American Mind" and Mike Rose in "Lives on the Boundary" reveal an almost endless list of obvious differences of perspective on literacy and higher education in America, both take divergent yet similar routes to create a permanent place for liberal education. Both Bloom and Rose use…

  13. Can Anne Be Like Margot and Still Be Anne? Adolescent Girls' Development and "Anne Frank: The Diary of a Young Girl."

    ERIC Educational Resources Information Center

    Irwin-DeVitis, Linda; Benjamin, Beth

    1995-01-01

    Explores the thoughts and feelings of a group of young adolescent girls on dilemmas of identity, self, and society through reading and discussing "The Diary of Anne Frank." Discusses adolescent females in literature and life, the double standard revisited, the dilemma of being right or being nice, and the challenge of including girls'…

  14. Toward the Identification of Two Glycoproteins Involved in the Stomatal Deregulation of Downy Mildew-Infected Grapevine Leaves.

    PubMed

    Guillier, Christelle; Gamm, Magdalena; Lucchi, Géraldine; Truntzer, Caroline; Pecqueur, Delphine; Ducoroy, Patrick; Adrian, Marielle; Héloir, Marie-Claire

    2015-11-01

    Stomata remain abnormally opened and unresponsive to abscisic acid in grapevine leaves infected by downy mildew. This deregulation occurs from 3 days postinoculation and increases concomitantly with leaf colonization by the pathogen. Using epidermal peels, we demonstrated that the active compound involved in this deregulation is located in the apoplast. Biochemical assays showed that the active compound present in the apoplastic fluids isolated from Plasmopara viticola-infected grapevine leaves (IAF) is a CysCys bridge-independent, thermostable and glycosylated protein. Fractionation guided assays based on chromatography coupled to stomatal response and proteomic analysis allowed the identification of both plant and pathogen proteins in the active fraction obtained from IAF. Further in silico analysis and discriminant filtrations based on the comparison between predictions and experimental indications lead to the identification of two Vitis vinifera proteins as candidates for the observed stomatal deregulation.

  15. Comparative effects of glyphosate and atrazine in chloroplast ultrastructure of wheat and downy brome. [Triticum aestivum; Bromus tectorum

    SciTech Connect

    Auge, R.M.; Gealy, D.R.; Ogg, A.G.; Franceschi, V.R.

    1987-04-01

    Developing and mature leaves of winter wheat (Triticum aestivum L. var. Daws) and the weed species downy brome (Bromus tectorum L.) were subjected to 10 mM (foliar application) and 1 mM (root application) herbicide solutions. Glyphosate (N-(phosphonomethyl) glycine) and atrazine (2-chloro-4-(ethyl-amino)-6-(isopropylamino)-s-triazine) were prepared in a carrier composed of 5% soybean oil concentrate, 35% acetone and 60% water. Penetration experiments with /sup 3/H-labelled herbicides assessed what percentage of herbicide entered leaves, and microautoradiography was used to determine qualitatively how much herbicide was present in the sections viewed with TEM. Tissue was excised at 4, 18, 62 and 200 hours, and then either freeze-substituted or fixed chemically. Ultrastructural effects of each herbicide on chloroplasts from leaves of newly-germinated seedlings and of well-tillered plants are depicted and discussed. Temporal differences in response of chloroplasts to each herbicide are noted.

  16. The MCT8 thyroid hormone transporter and Allan-Herndon-Dudley syndrome.

    PubMed

    Schwartz, Charles E; Stevenson, Roger E

    2007-06-01

    Thyroid hormone is essential for the proper development and function of the brain. The active form of thyroid hormone is T(3), which binds to nuclear receptors. Recently, a transporter specific for T(3), MCT8 (monocarboxylate transporter 8) was identified. MCT8 is highly expressed in liver and brain. The gene is located in Xq13 and mutations in MCT8 are responsible for an X-linked condition, Allan-Herndon-Dudley syndrome (AHDS). This syndrome is characterized by congenital hypotonia that progresses to spasticity with severe psychomotor delays. Affected males also present with muscle hypoplasia, generalized muscle weakness, and limited speech. Importantly, these patients have elevated serum levels of free T(3), low to below normal serum levels of free T(4), and levels of thyroid stimulating hormone that are within the normal range. This constellation of measurements of thyroid function enables quick screening for AHDS in males presenting with cognitive impairment, congenital hypotonia, and generalized muscle weakness.

  17. Investigations into an unknown organism on the martian meteorite Allan Hills 84001

    NASA Technical Reports Server (NTRS)

    Steele, A.; Goddard, D. T.; Stapleton, D.; Toporski, J. K.; Peters, V.; Bassinger, V.; Sharples, G.; Wynn-Williams, D. D.; McKay, D. S.

    2000-01-01

    Examination of fracture surfaces near the fusion crust of the martian meteorite Allan Hills (ALH) 84001 have been conducted using scanning electron microscopy (SEM) and atomic force microscopy (AFM) and has revealed structures strongly resembling mycelium. These structures were compared with similar structures found in Antarctic cryptoendolithic communities. On morphology alone, we conclude that these features are not only terrestrial in origin but probably belong to a member of the Actinomycetales, which we consider was introduced during the Antarctic residency of this meteorite. If true, this is the first documented account of terrestrial microbial activity within a meteorite from the Antarctic blue ice fields. These structures, however, do not bear any resemblance to those postulated to be martian biota, although they are a probable source of the organic contaminants previously reported in this meteorite.

  18. Investigations into an unknown organism on the martian meteorite Allan Hills 84001

    NASA Technical Reports Server (NTRS)

    Steele, A.; Goddard, D. T.; Stapleton, D.; Toporski, J. K.; Peters, V.; Bassinger, V.; Sharples, G.; Wynn-Williams, D. D.; McKay, D. S.

    2000-01-01

    Examination of fracture surfaces near the fusion crust of the martian meteorite Allan Hills (ALH) 84001 have been conducted using scanning electron microscopy (SEM) and atomic force microscopy (AFM) and has revealed structures strongly resembling mycelium. These structures were compared with similar structures found in Antarctic cryptoendolithic communities. On morphology alone, we conclude that these features are not only terrestrial in origin but probably belong to a member of the Actinomycetales, which we consider was introduced during the Antarctic residency of this meteorite. If true, this is the first documented account of terrestrial microbial activity within a meteorite from the Antarctic blue ice fields. These structures, however, do not bear any resemblance to those postulated to be martian biota, although they are a probable source of the organic contaminants previously reported in this meteorite.

  19. A unique type 3 ordinary chondrite containing graphite-magnetite aggregates - Allan Hills A77011

    NASA Technical Reports Server (NTRS)

    Mckinley, S. G.; Scott, E. R. D.; Taylor, G. J.; Keil, K.

    1982-01-01

    ALHA 77011, which is the object of study in the present investigation, is a chondrite of the 1977 meteorite collection from Allan Hills, Antarctica. It contains an opaque and recrystallized silicate matrix (Huss matrix) and numerous aggregates consisting of micron- and submicron-sized graphite and magnetite. It is pointed out that no abundant graphite-magnetite aggregates could be observed in other type 3 ordinary chondrites, except for Sharps. Attention is given to the results of a modal analysis, relations between ALHA 77011 and other type 3 ordinary chondrites, and the association of graphite-magnetite and metallic Fe, Ni. The discovery of graphite-magnetite aggregates in type 3 ordinary chondrites is found to suggest that this material may have been an important component in the formation of ordinary chondrites.

  20. Composition of bulk samples and a possible pristine clast from Allan Hills A81005

    NASA Technical Reports Server (NTRS)

    Boynton, W. V.; Hill, D. H.

    1983-01-01

    Abundances of thirty-five elements were determined in two bulk samples and a white clast in the Allan Hills A81005 meteorite. High siderophile element content indicates that the sample is a regolith breccia. An Fe/Mn ratio of 77 in this meteorite eliminates parent bodies of known differentiated meteorites as the source of ALHA 81005. The incompatible elements are very similar to those found in most lunar highlands rocks, and provide very strong evidence that the sample is lunar in origin. The clast sample has the trace element pattern of a lunar anorthosite and is very low in KREEP and siderophile elements. It may be a fragment of a pristine lunar rock.

  1. Element distribution and noble gas isotopic abundances in lunar meteorite Allan Hills A81005

    NASA Technical Reports Server (NTRS)

    Kraehenbuehl, U.; Eugster, O.; Niedermann, S.

    1986-01-01

    Antarctic meteorite ALLAN HILLS A81005, an anorthositic breccia, is recognized to be of lunar origin. The noble gases in this meteorite were analyzed and found to be solar-wind implanted gases, whose absolute and relative concentrations are quite similar to those in lunar regolith samples. A sample of this meteorite was obtained for the analysis of the noble gas isotopes, including Kr(81), and for the determination of the elemental abundances. In order to better determine the volume derived from the surface correlated gases, grain size fractions were prepared. The results of the instrumental measurements of the gamma radiation are listed. From the amounts of cosmic ray produced noble gases and respective production rates, the lunar surface residence times were calculated. It was concluded that the lunar surface time is about half a billion years.

  2. Investigations into an unknown organism on the martian meteorite Allan Hills 84001.

    PubMed

    Steele, A; Goddard, D T; Stapleton, D; Toporski, J K; Peters, V; Bassinger, V; Sharples, G; Wynn-Williams, D D; McKay, D S

    2000-03-01

    Examination of fracture surfaces near the fusion crust of the martian meteorite Allan Hills (ALH) 84001 have been conducted using scanning electron microscopy (SEM) and atomic force microscopy (AFM) and has revealed structures strongly resembling mycelium. These structures were compared with similar structures found in Antarctic cryptoendolithic communities. On morphology alone, we conclude that these features are not only terrestrial in origin but probably belong to a member of the Actinomycetales, which we consider was introduced during the Antarctic residency of this meteorite. If true, this is the first documented account of terrestrial microbial activity within a meteorite from the Antarctic blue ice fields. These structures, however, do not bear any resemblance to those postulated to be martian biota, although they are a probable source of the organic contaminants previously reported in this meteorite.

  3. The MCT8 thyroid hormone transporter and Allan--Herndon--Dudley syndrome

    PubMed Central

    Schwartz, Charles E.; Stevenson, Roger E.

    2007-01-01

    Thyroid hormone is essential for the proper development and function of the brain. The active form of thyroid hormone is T3, which binds to nuclear receptors. Recently, a transporter specific for T3, MCT8 (monocarboxylate transporter 8) was identified. MCT8 is highly expressed in liver and brain. The gene is located in Xq13 and mutations in MCT8 are responsible for an X-linked condition, Allan--Herndon--Dudley syndrome (AHDS). This syndrome is characterized by congenital hypotonia that progresses to spasticity with severe psychomotor delays. Affected males also present with muscle hypoplasia, generalized muscle weakness, and limited speech. Importantly, these patients have elevated serum levels of free T3, low to below normal serum levels of free T4, and levels of thyroid stimulating hormone that are within the normal range. This constellation of measurements of thyroid function enables quick screening for AHDS in males presenting with mental retardation, congenital hypotonia, and generalized muscle weakness. PMID:17574010

  4. Analysis of chaotic and noise processes in a fluctuating blood flow using the Allan variance technique.

    PubMed

    Basarab, M A; Basarab, D A; Konnova, N S; Matsievskiy, D D; Matveev, V A

    2016-01-01

    The aim of this work was to develop a novel technique for digital processing of Doppler ultrasound blood flow sensor data from noisy blood flow velocity waveforms. To evaluate the fluctuating blood flow parameters, various nonlinear dynamics methods and algorithms are often being used. Here, for identification of chaotic and noise components in a fluctuating coronary blood flow, for the first time the Allan variance technique was used. Analysis of different types of noises (White, Brownian, Flicker) was carried out and their strong correlation with fractality of time series (the Hurst exponent) was revealed. Based on a specialized software realizing the developed technique, numerical experiments with real clinical data were carried out. Recommendations for identification of noisy patterns of coronary blood flow in normal and pathological states were developed. The methodology gives us the possibility for the more detailed quantitative and qualitative analysis of a noisy fluctuating blood flow data.

  5. A unique type 3 ordinary chondrite containing graphite-magnetite aggregates - Allan Hills A77011

    NASA Technical Reports Server (NTRS)

    Mckinley, S. G.; Scott, E. R. D.; Taylor, G. J.; Keil, K.

    1982-01-01

    ALHA 77011, which is the object of study in the present investigation, is a chondrite of the 1977 meteorite collection from Allan Hills, Antarctica. It contains an opaque and recrystallized silicate matrix (Huss matrix) and numerous aggregates consisting of micron- and submicron-sized graphite and magnetite. It is pointed out that no abundant graphite-magnetite aggregates could be observed in other type 3 ordinary chondrites, except for Sharps. Attention is given to the results of a modal analysis, relations between ALHA 77011 and other type 3 ordinary chondrites, and the association of graphite-magnetite and metallic Fe, Ni. The discovery of graphite-magnetite aggregates in type 3 ordinary chondrites is found to suggest that this material may have been an important component in the formation of ordinary chondrites.

  6. Resistance to Downy Mildew in Lettuce 'La Brillante' is Conferred by Dm50 Gene and Multiple QTL.

    PubMed

    Simko, Ivan; Ochoa, Oswaldo E; Pel, Mathieu A; Tsuchida, Cayla; Font I Forcada, Carolina; Hayes, Ryan J; Truco, Maria-Jose; Antonise, Rudie; Galeano, Carlos H; Michelmore, Richard W

    2015-09-01

    Many cultivars of lettuce (Lactuca sativa L.) are susceptible to downy mildew, a nearly globally ubiquitous disease caused by Bremia lactucae. We previously determined that Batavia type cultivar 'La Brillante' has a high level of field resistance to the disease in California. Testing of a mapping population developed from a cross between 'Salinas 88' and La Brillante in multiple field and laboratory experiments revealed that at least five loci conferred resistance in La Brillante. The presence of a new dominant resistance gene (designated Dm50) that confers complete resistance to specific isolates was detected in laboratory tests of seedlings inoculated with multiple diverse isolates. Dm50 is located in the major resistance cluster on linkage group 2 that contains at least eight major, dominant Dm genes conferring resistance to downy mildew. However, this Dm gene is ineffective against the isolates of B. lactucae prevalent in the field in California and the Netherlands. A quantitative trait locus (QTL) located at the Dm50 chromosomal region (qDM2.2) was detected, though, when the amount of disease was evaluated a month before plants reached harvest maturity. Four additional QTL for resistance to B. lactucae were identified on linkage groups 4 (qDM4.1 and qDM4.2), 7 (qDM7.1), and 9 (qDM9.2). The largest effect was associated with qDM7.1 (up to 32.9% of the total phenotypic variance) that determined resistance in multiple field experiments. Markers identified in the present study will facilitate introduction of these resistance loci into commercial cultivars of lettuce.

  7. Reference gene selection and validation for the early responses to downy mildew infection in susceptible and resistant Vitis vinifera cultivars.

    PubMed

    Monteiro, Filipa; Sebastiana, Mónica; Pais, Maria Salomé; Figueiredo, Andreia

    2013-01-01

    The pivotal role of cultivated grapevine (Vitis vinifera L.) in many countries economy is compromised by its high susceptibility to Plasmopara viticola, the causal agent of downy mildew disease. Recent research has identified a set of genes related to resistance which may be used to track downy mildew infection. Quantification of the expression of these resistance genes requires normalizing qPCR data using reference genes with stable expression in the system studied. In this study, a set of eleven genes (VATP16, 60 S, UQCC, SMD3, EF1α, UBQ, SAND, GAPDH, ACT, PsaB, PTB2) was evaluated to identify reference genes during the first hours of interaction (6, 12, 18 and 24 hpi) between two V. vinifera genotypes and P. viticola. Two analyses were used for the selection of reference genes: direct comparison of susceptible, Trincadeira, and resistant, Regent, V. vinifera cultivars at 0 h, 6, 12, 18 and 24 hours post inoculation with P. viticola (genotype effect); and comparison of each genotype with mock inoculated samples during inoculation time-course (biotic stress effect). Three statistical methods were used, GeNorm, NormFinder, and BestKeeper, allowing to identify UBQ, EF1α and GAPDH as the most stable genes for the genotype effect. For the biotic stress effect, EF1α, SAND and SMD3 were the most constant for the susceptible cultivar Trincadeira and EF1α, GAPDH, UBQ for the resistant cultivar Regent. In addition, the expression of three defense-related transcripts, encoding for subtilisin-like protein, CYP and PR10, was analysed, for both datasets, during inoculation time-course. Taken together, our results provide guidelines for reference gene(s) selection towards a more accurate and widespread use of qPCR to study the first hours of interaction between different grapevine cultivars and P. viticola.

  8. Effector Polymorphisms of the Sunflower Downy Mildew Pathogen Plasmopara halstedii and Their Use to Identify Pathotypes from Field Isolates

    PubMed Central

    Gascuel, Quentin; Bordat, Amandine; Sallet, Erika; Pouilly, Nicolas; Carrere, Sébastien; Roux, Fabrice

    2016-01-01

    The obligate biotroph oomycete Plasmopara halstedii causes downy mildew on sunflower crop, Helianthus annuus. The breakdown of several Pl resistance genes used in sunflower hybrids over the last 25 years came along with the appearance of new Pl. halstedii isolates showing modified virulence profiles. In oomycetes, two classes of effector proteins, key players of pathogen virulence, are translocated into the host: RXLR and CRN effectors. We identified 54 putative CRN or RXLR effector genes from transcriptomic data and analyzed their genetic diversity in seven Pl. halstedii pathotypes representative of the species variability. Pl. halstedii effector genes were on average more polymorphic at both the nucleic and protein levels than random non-effector genes, suggesting a potential adaptive dynamics of pathogen virulence over the last 25 years. Twenty-two KASP (Competitive Allele Specific PCR) markers designed on polymorphic effector genes were genotyped on 35 isolates belonging to 14 Pl. halstedii pathotypes. Polymorphism analysis based on eight KASP markers aims at proposing a determination key suitable to classify the eight multi-isolate pathotypes into six groups. This is the first report of a molecular marker set able to discriminate Pl. halstedii pathotypes based on the polymorphism of pathogenicity effectors. Compared to phenotypic tests handling living spores used until now to discriminate Pl. halstedii pathotypes, this set of molecular markers constitutes a first step in faster pathotype diagnosis of Pl. halstedii isolates. Hence, emerging sunflower downy mildew isolates could be more rapidly characterized and thus, assessment of plant resistance breakdown under field conditions should be improved. PMID:26845339

  9. Nonbreeding season pairing behavior and the annual cycle of testosterone in male and female downy woodpeckers, Picoides pubescens.

    PubMed

    Kellam, James S; Wingfield, John C; Lucas, Jeffrey R

    2004-12-01

    Studies in birds show that testosterone (T) concentrations vary over the annual cycle depending on mating system and life history traits. Socially monogamous species show pairing behavior throughout the year and low levels of male-male aggression and are underrepresented in these studies, yet the function of testosterone could be particularly important for sexual and social interactions occurring outside the breeding season. We measured fecal T concentrations over the annual cycle and the frequency of interactions between male and female downy woodpeckers (Picoides pubescens) from late fall through early spring. We validated the fecal assay by collecting blood in conjunction with a subsample of our fecal samples: fecal T correlated with circulating levels in the blood. The annual peak level of T in males was relatively low and short-lived, similar to that of other bird species with low levels of male-male aggression and high paternal care. The annual cycle of female T resembled the male pattern, and the ratio of male T to female T was close to 1.0. Likewise, the frequency of aggression among females was similar to the frequency among males. Overall, testosterone levels in both sexes were variable, even in winter. In other bird species, sexual behavior during nonbreeding periods correlates with circulating levels of T in males. Based on this observation, we tested the hypothesis that T in winter was positively related to the frequency of interaction between mated downy woodpeckers. The results showed no such relationship. We discuss this finding and further relate the annual cycle of T in both males and females to behaviors that appear to facilitate mate choice and retention of the pair bond during conspecific challenge.

  10. Biotic and abiotic factors affecting stemflow variability in downy oak and Scots pine stands in Mediterranean conditions

    NASA Astrophysics Data System (ADS)

    Cayuela, Carles; Garcia-Estringana, Pablo; Latron, Jérôme; Llorens, Pilar

    2015-04-01

    Although stemflow is only a small portion of rainfall, it may represent an important local input of water and nutrients at the plant stem. Previous studies have shown that stemflow has a significant influence on hydrological and biogeochemical processes. Stemflow volume is affected by many biotic factors as species, age, branch or bark characteristics. Moreover, the seasonality of the rainfall regime in Mediterranean areas, which includes both frontal rainfall events and short convective storms, can add complexity to the rainfall-stemflow relationship. This work investigates stemflow dynamics and the influence of biotic and abiotic factors on stemflow rates in two Mediterranean stands during the leafed period - from May to October. The monitored stands are a Downy oak forest (Quercus pubescens) and a Scots pine forest (Pinus sylvestris), both located in the Vallcebre research catchments (NE Spain, 42° 12'N, 1° 49'E). The monitoring design of each plot consists of 7 stemflow rings connected to tipping-buckets, bulk rainfall measured in a nearby clearing and meteorological conditions above the canopies. All data were recorded at 5 min interval. Biometric characteristics of the measured trees were also measured. The analysis of 39 rainfall events (65% smaller than 10 mm) shows that stemflow accounted for less than 1% of the bulk rainfall in both stands. Results also show that, on average, the rainfall amount required for the start of the stemflow and the time delay between the beginning of the precipitation and the start of stemflow are higher in the Downy oak forest. As suggested by stemflow funneling ratios, these differences might be linked to the canopy structure and bark water storage capacity of the trees, indicating that during low magnitude events, oaks have more difficulty to reach storage capacity. The role of other biotic and abiotic parameters on stemflow variability in both stands is still under investigation.

  11. [An early warning method of cucumber downy mildew in solar greenhouse based on canopy temperature and humidity modeling].

    PubMed

    Wang, Hui; Li, Mei-lan; Xu, Jian-ping; Chen, Mei-xiang; Li, Wen-yong; Li, Ming

    2015-10-01

    The greenhouse environmental parameters can be used to establish greenhouse nirco-climate model, which can combine with disease model for early warning, with aim of ecological controlling diseases to reduce pesticide usage, and protecting greenhouse ecological environment to ensure the agricultural product quality safety. Greenhouse canopy leaf temperature and air relative humidity, models were established using energy balance and moisture balance principle inside the greenhouse. The leaf temperature model considered radiation heat transfer between the greenhouse crops, wall, soil and cover, plus the heat exchange caused by indoor net radiation and crop transpiration. Furthermore, the water dynamic balance in the greenhouse including leaf transpiration, soil evaporation, cover and leaf water vapor condensation, was considered to develop a relative humidity model. The primary infection and latent period warning models for cucumber downy mildew (Pseudoperonospora cubensis) were validated using the results of the leaf temperature and relative humidity model, and then the estimated disease occurrence date of cucumber downy mildew was compared with actual disease occurrence date of field observation. Finally, the results were verified by the measured temperature and humidity data of September and October, 2014. The results showed that the root mean square deviations (RMSDs) of the measured and estimated leaf temperature were 0.016 and 0.024 °C, and the RMSDs of the measured and estimated air relative humidity were 0.15% and 0.13%, respectively. Combining the result of estimated temperature and humidity models, a cucumber disease early warning system was established to forecast the date of disease occurrence, which met with the real date. Thus, this work could provide the micro-environment data for the early warning system of cucumber diseases in solar greenhouses.

  12. Playing tag with ANN: boosted top identification with pattern recognition

    NASA Astrophysics Data System (ADS)

    Almeida, Leandro G.; Backović, Mihailo; Cliche, Mathieu; Lee, Seung J.; Perelstein, Maxim

    2015-07-01

    Many searches for physics beyond the Standard Model at the Large Hadron Collider (LHC) rely on top tagging algorithms, which discriminate between boosted hadronic top quarks and the much more common jets initiated by light quarks and gluons. We note that the hadronic calorimeter (HCAL) effectively takes a "digital image" of each jet, with pixel intensities given by energy deposits in individual HCAL cells. Viewed in this way, top tagging becomes a canonical pattern recognition problem. With this motivation, we present a novel top tagging algorithm based on an Artificial Neural Network (ANN), one of the most popular approaches to pattern recognition. The ANN is trained on a large sample of boosted tops and light quark/gluon jets, and is then applied to independent test samples. The ANN tagger demonstrated excellent performance in a Monte Carlo study: for example, for jets with p T in the 1100-1200 GeV range, 60% top-tag efficiency can be achieved with a 4% mis-tag rate. We discuss the physical features of the jets identified by the ANN tagger as the most important for classification, as well as correlations between the ANN tagger and some of the familiar top-tagging observables and algorithms.

  13. Integration of ANN with TOPMODEL in daily stream flow forecasting

    NASA Astrophysics Data System (ADS)

    Xu, Jingwen; Xie, Xingmei; Xian, Junren; Zhang, Wanchang; Shen, Lan

    2010-07-01

    Despite the strength and a increasing interest in application of artificial neural networks (ANNs) to rainfall runoff simulating, the deficiencies associated with traditional applications of ANNs in which the networks essentially function as black box models is obvious. The objective of this work is therefore to enhance the ANN-based rainfall runoff models' ability in the description of hydrological processes such as interception, infiltration, surface runoff, sub-surface runoff and evapotranspiration by integrating it with TOPMODEL, which is a simple physically based rainfall-runoff model and has become increasingly popular and widely used in a great number of applications in recent years. A new integrated model named ANN-TOPMODEL is proposed in this study. Baohe River basin (2413 km2), located at the upper stream of the Hanjiang Catchment in Yangtze River Basin, China, is selected as the study area for testing the new model. The results show that the daily stream flows simulated by the new model are in good agreement with the observed ones, while the daily stream flows simulated by TOPMODEL greatly overestimates or underestimates some peak flows both for calibration period and validation period. Further more, the new model resulted in a Nash and Sutcliffe efficiency coefficient value of 0.905 for validation period, which is significantly larger than TOPMODEL. The results demonstrate that the proposed integrated model based on ANN and TOPMODEL is promising in daily stream flow modeling.

  14. Allan-Herndon-Dudley syndrome and the monocarboxylate transporter 8 (MCT8) gene.

    PubMed

    Schwartz, Charles E; May, Melanie M; Carpenter, Nancy J; Rogers, R Curtis; Martin, Judith; Bialer, Martin G; Ward, Jewell; Sanabria, Javier; Marsa, Silvana; Lewis, James A; Echeverri, Roberto; Lubs, Herbert A; Voeller, Kytja; Simensen, Richard J; Stevenson, Roger E

    2005-07-01

    Allan-Herndon-Dudley syndrome was among the first of the X-linked mental retardation syndromes to be described (in 1944) and among the first to be regionally mapped on the X chromosome (in 1990). Six large families with the syndrome have been identified, and linkage studies have placed the gene locus in Xq13.2. Mutations in the monocarboxylate transporter 8 gene (MCT8) have been found in each of the six families. One essential function of the protein encoded by this gene appears to be the transport of triiodothyronine into neurons. Abnormal transporter function is reflected in elevated free triiodothyronine and lowered free thyroxine levels in the blood. Infancy and childhood in the Allan-Herndon-Dudley syndrome are marked by hypotonia, weakness, reduced muscle mass, and delay of developmental milestones. Facial manifestations are not distinctive, but the face tends to be elongated with bifrontal narrowing, and the ears are often simply formed or cupped. Some patients have myopathic facies. Generalized weakness is manifested by excessive drooling, forward positioning of the head and neck, failure to ambulate independently, or ataxia in those who do ambulate. Speech is dysarthric or absent altogether. Hypotonia gives way in adult life to spasticity. The hands exhibit dystonic and athetoid posturing and fisting. Cognitive development is severely impaired. No major malformations occur, intrauterine growth is not impaired, and head circumference and genital development are usually normal. Behavior tends to be passive, with little evidence of aggressive or disruptive behavior. Although clinical signs of thyroid dysfunction are usually absent in affected males, the disturbances in blood levels of thyroid hormones suggest the possibility of systematic detection through screening of high-risk populations.

  15. The Natural Thermoluminescence of Meteorites. Part 5; Ordinary Chondrites at the Allan Hills Ice Fields

    NASA Technical Reports Server (NTRS)

    Benoit, Paul H.; Sears, Hazel; Sears, Derek W. G.

    1993-01-01

    Natural thermoluminescence (TL) data have been obtained for 167 ordinary chondrites from the ice fields in the vicinity of the Allan Hills in Victoria Land, Antarctica, in order to investigate their thermal and radiation history, pairing, terrestrial age, and concentration mechanisms. Using fairly conservative criteria (including natural and induced TL, find location, and petrographic data), the 167 meteorite fragments are thought to represent a maximum of 129 separate meteorites. Natural TL values for meteorites from the Main ice field are fairly low (typically 5-30 krad, indicative of terrestrial ages of approx. 400 ka), while the Far western field shows a spread with many values 30-80 krad, suggestive of less then 150-ka terrestrial ages. There appear to be trends in TL levels within individual ice fields which are suggestive of directions of ice movement at these sites during the period of meteorite concentration. These directions seem to be confirmed by the orientations of elongation preserved in meteorite pairing groups. The proportion of meteorites with very low natural TL levels (less then 5 krad) at each field is comparable to that observed at the Lewis Cliff site and for modern non-Antarctic falls and is also similar to the fraction of small perihelia (less then 0.85 AU) orbits calculated from fireball and fall observations. Induced TL data for meteorites from the Allan Hills confirm trends observed for meteorites collected during the 1977/1978 and 1978/1979 field seasons which show that a select group of H chondrites from the Antarctic experienced a different extraterrestrial thermal history to that of non-Antarctic H chondrites.

  16. Application of Fast Dynamic Allan Variance for the Characterization of FOGs-Based Measurement While Drilling

    PubMed Central

    Wang, Lu; Zhang, Chunxi; Gao, Shuang; Wang, Tao; Lin, Tie; Li, Xianmu

    2016-01-01

    The stability of a fiber optic gyroscope (FOG) in measurement while drilling (MWD) could vary with time because of changing temperature, high vibration, and sudden power failure. The dynamic Allan variance (DAVAR) is a sliding version of the Allan variance. It is a practical tool that could represent the non-stationary behavior of the gyroscope signal. Since the normal DAVAR takes too long to deal with long time series, a fast DAVAR algorithm has been developed to accelerate the computation speed. However, both the normal DAVAR algorithm and the fast algorithm become invalid for discontinuous time series. What is worse, the FOG-based MWD underground often keeps working for several days; the gyro data collected aboveground is not only very time-consuming, but also sometimes discontinuous in the timeline. In this article, on the basis of the fast algorithm for DAVAR, we make a further advance in the fast algorithm (improved fast DAVAR) to extend the fast DAVAR to discontinuous time series. The improved fast DAVAR and the normal DAVAR are used to responsively characterize two sets of simulation data. The simulation results show that when the length of the time series is short, the improved fast DAVAR saves 78.93% of calculation time. When the length of the time series is long (6×105 samples), the improved fast DAVAR reduces calculation time by 97.09%. Another set of simulation data with missing data is characterized by the improved fast DAVAR. Its simulation results prove that the improved fast DAVAR could successfully deal with discontinuous data. In the end, a vibration experiment with FOGs-based MWD has been implemented to validate the good performance of the improved fast DAVAR. The results of the experience testify that the improved fast DAVAR not only shortens computation time, but could also analyze discontinuous time series. PMID:27941600

  17. Application of Fast Dynamic Allan Variance for the Characterization of FOGs-Based Measurement While Drilling.

    PubMed

    Wang, Lu; Zhang, Chunxi; Gao, Shuang; Wang, Tao; Lin, Tie; Li, Xianmu

    2016-12-07

    The stability of a fiber optic gyroscope (FOG) in measurement while drilling (MWD) could vary with time because of changing temperature, high vibration, and sudden power failure. The dynamic Allan variance (DAVAR) is a sliding version of the Allan variance. It is a practical tool that could represent the non-stationary behavior of the gyroscope signal. Since the normal DAVAR takes too long to deal with long time series, a fast DAVAR algorithm has been developed to accelerate the computation speed. However, both the normal DAVAR algorithm and the fast algorithm become invalid for discontinuous time series. What is worse, the FOG-based MWD underground often keeps working for several days; the gyro data collected aboveground is not only very time-consuming, but also sometimes discontinuous in the timeline. In this article, on the basis of the fast algorithm for DAVAR, we make a further advance in the fast algorithm (improved fast DAVAR) to extend the fast DAVAR to discontinuous time series. The improved fast DAVAR and the normal DAVAR are used to responsively characterize two sets of simulation data. The simulation results show that when the length of the time series is short, the improved fast DAVAR saves 78.93% of calculation time. When the length of the time series is long ( 6 × 10 5 samples), the improved fast DAVAR reduces calculation time by 97.09%. Another set of simulation data with missing data is characterized by the improved fast DAVAR. Its simulation results prove that the improved fast DAVAR could successfully deal with discontinuous data. In the end, a vibration experiment with FOGs-based MWD has been implemented to validate the good performance of the improved fast DAVAR. The results of the experience testify that the improved fast DAVAR not only shortens computation time, but could also analyze discontinuous time series.

  18. The Natural Thermoluminescence of Meteorites. Part 5; Ordinary Chondrites at the Allan Hills Ice Fields

    NASA Technical Reports Server (NTRS)

    Benoit, Paul H.; Sears, Hazel; Sears, Derek W. G.

    1993-01-01

    Natural thermoluminescence (TL) data have been obtained for 167 ordinary chondrites from the ice fields in the vicinity of the Allan Hills in Victoria Land, Antarctica, in order to investigate their thermal and radiation history, pairing, terrestrial age, and concentration mechanisms. Using fairly conservative criteria (including natural and induced TL, find location, and petrographic data), the 167 meteorite fragments are thought to represent a maximum of 129 separate meteorites. Natural TL values for meteorites from the Main ice field are fairly low (typically 5-30 krad, indicative of terrestrial ages of approx. 400 ka), while the Far western field shows a spread with many values 30-80 krad, suggestive of less then 150-ka terrestrial ages. There appear to be trends in TL levels within individual ice fields which are suggestive of directions of ice movement at these sites during the period of meteorite concentration. These directions seem to be confirmed by the orientations of elongation preserved in meteorite pairing groups. The proportion of meteorites with very low natural TL levels (less then 5 krad) at each field is comparable to that observed at the Lewis Cliff site and for modern non-Antarctic falls and is also similar to the fraction of small perihelia (less then 0.85 AU) orbits calculated from fireball and fall observations. Induced TL data for meteorites from the Allan Hills confirm trends observed for meteorites collected during the 1977/1978 and 1978/1979 field seasons which show that a select group of H chondrites from the Antarctic experienced a different extraterrestrial thermal history to that of non-Antarctic H chondrites.

  19. Allan-Herndon-Dudley Syndrome and the Monocarboxylate Transporter 8 (MCT8) Gene

    PubMed Central

    Schwartz, Charles E. ; May, Melanie M. ; Carpenter, Nancy J. ; Rogers, R. Curtis ; Martin, Judith ; Bialer, Martin G. ; Ward, Jewell ; Sanabria, Javier ; Marsa, Silvana ; Lewis, James A. ; Echeverri, Roberto ; Lubs, Herbert A. ; Voeller, Kytja ; Simensen, Richard J. ; Stevenson, Roger E. 

    2005-01-01

    Allan-Herndon-Dudley syndrome was among the first of the X-linked mental retardation syndromes to be described (in 1944) and among the first to be regionally mapped on the X chromosome (in 1990). Six large families with the syndrome have been identified, and linkage studies have placed the gene locus in Xq13.2. Mutations in the monocarboxylate transporter 8 gene (MCT8) have been found in each of the six families. One essential function of the protein encoded by this gene appears to be the transport of triiodothyronine into neurons. Abnormal transporter function is reflected in elevated free triiodothyronine and lowered free thyroxine levels in the blood. Infancy and childhood in the Allan-Herndon-Dudley syndrome are marked by hypotonia, weakness, reduced muscle mass, and delay of developmental milestones. Facial manifestations are not distinctive, but the face tends to be elongated with bifrontal narrowing, and the ears are often simply formed or cupped. Some patients have myopathic facies. Generalized weakness is manifested by excessive drooling, forward positioning of the head and neck, failure to ambulate independently, or ataxia in those who do ambulate. Speech is dysarthric or absent altogether. Hypotonia gives way in adult life to spasticity. The hands exhibit dystonic and athetoid posturing and fisting. Cognitive development is severely impaired. No major malformations occur, intrauterine growth is not impaired, and head circumference and genital development are usually normal. Behavior tends to be passive, with little evidence of aggressive or disruptive behavior. Although clinical signs of thyroid dysfunction are usually absent in affected males, the disturbances in blood levels of thyroid hormones suggest the possibility of systematic detection through screening of high-risk populations. PMID:15889350

  20. Allan Hills 76005 Polymict Eucrite Pairing Group: Curatorial and Scientific Update on a Jointly Curated Meteorite

    NASA Technical Reports Server (NTRS)

    Righter, K.

    2011-01-01

    Allan Hills 76005 (or 765) was collected by the joint US-Japan field search for meteorites in 1976-77. It was described in detail as "pale gray in color and consists of finely divided macrocrystalline pyroxene-rich matrix that contains abundant clastic fragments: (1) Clasts of white, plagioclase-rich rocks. (2) Medium-gray, partly devitrified, cryptocrystalline. (3) Monomineralic fragments and grains of pyroxene, plagioclases, oxide minerals, sulfides, and metal. In overall appearance it is very similar to some lunar breccias." Subsequent studies found a great diversity of basaltic clast textures and compositions, and therefore it is best classified as a polymict eucrite. Samples from the 1976-77, 77-78, and 78-79 field seasons (76, 77, and 78 prefixes) were split between US and Japan (NIPR). The US specimens are currently at NASA-JSC, Smithsonian Institution, or the Field Museum in Chicago. After this initial finding of ALH 76005, the next year s team recovered one additional mass ALH 77302, and then four additional masses were found during the third season ALH 78040 and ALH 78132, 78158 and 78165. The joint US-Japan collection effort ended after three years and the US began collecting in the Trans-Antarctic Mountains with the 1979-80 and subsequent field seasons. ALH 79017 and ALH 80102 were recovered in these first two years, and then in 1981-82 field season, 6 additional masses were recovered from the Allan Hills. Of course it took some time to establish pairing of all of these specimens, but altogether the samples comprise 4292.4 g of material. Here will be summarized the scientific findings as well as some curatorial details of how specimens have been subdivided and allocated for study. A detailed summary is also presented on the NASA-JSC curation webpage for the HED meteorite compendium.

  1. Polymorphic SSR Markers for Plasmopara obducens (Peronosporaceae), the Newly Emergent Downy Mildew Pathogen of Impatiens (Balsaminaceae)

    SciTech Connect

    Salgado-Salazar, Catalina; Rivera, Yazmín; Veltri, Daniel; Crouch, Jo Anne

    2015-11-10

    Premise of the study: Simple sequence repeat (SSR) markers were developed for Plasmopara obducens, the causal agent of the newly emergent downy mildew disease of Impatiens walleriana. Methods and Results: A 202-Mb draft genome assembly was generated from P. obducens using Illumina technology and mined to identify 13,483 SSR motifs. Primers were synthesized for 62 marker candidates, of which 37 generated reliable PCR products. Testing of the 37 markers using 96 P. obducens samples showed 96% of the markers were polymorphic, with 2-6 alleles observed. Observed and expected heterozygosity ranged from 0.000-0.892 and 0.023-0.746, respectively. Just 17 markers were sufficient to identify all multilocus genotypes. Conclusions: These are the first SSR markers available for this pathogen, and one of the first molecular resources. These markers will be useful in assessing variation in pathogen populations and determining the factors contributing to the emergence of destructive impatiens downy mildew disease.

  2. Molecular detection of Peronospora variabilis in quinoa seed and phylogeny of the quinoa downy mildew pathogen in South America and the United States.

    PubMed

    Testen, Anna L; del Mar Jiménez-Gasco, María; Ochoa, José B; Backman, Paul A

    2014-04-01

    Quinoa (Chenopodium quinoa) is an important export of the Andean region, and its key disease is quinoa downy mildew, caused by Peronospora variabilis. P. variabilis oospores can be seedborne and rapid methods to detect seedborne P. variabilis have not been developed. In this research, a polymerase chain reaction (PCR)-based detection method was developed to detect seedborne P. variabilis and a sequencing-based method was used to validate the PCR-based method. P. variabilis was detected in 31 of 33 quinoa seed lots using the PCR-based method and in 32 of 33 quinoa seed lots using the sequencing-based method. Thirty-one of the quinoa seed lots tested in this study were sold for human consumption, with seed originating from six different countries. Internal transcribed spacer (ITS) and cytochrome c oxidase subunit 2 (COX2) phylogenies were examined to determine whether geographical differences occurred in P. variabilis populations originating from Ecuador, Bolivia, and the United States. No geographical differences were observed in the ITS-derived phylogeny but the COX2 phylogeny indicated that geographical differences existed between U.S. and South American samples. Both ITS and COX2 phylogenies supported the existence of a Peronospora sp., distinct from P. variabilis, that causes systemic-like downy mildew symptoms on quinoa in Ecuador. The results of these studies allow for a better understanding of P. variabilis populations in South America and identified a new causal agent for quinoa downy mildew. The PCR-based seed detection method allows for the development of P. variabilis-free quinoa seed, which may prove important for management of quinoa downy mildew.

  3. A first linkage map and downy mildew resistance QTL discovery for sweet basil (Ocimum basilicum) facilitated by double digestion restriction site associated DNA sequencing (ddRADseq).

    PubMed

    Pyne, Robert; Honig, Josh; Vaiciunas, Jennifer; Koroch, Adolfina; Wyenandt, Christian; Bonos, Stacy; Simon, James

    2017-01-01

    Limited understanding of sweet basil (Ocimum basilicum L.) genetics and genome structure has reduced efficiency of breeding strategies. This is evidenced by the rapid, worldwide dissemination of basil downy mildew (Peronospora belbahrii) in the absence of resistant cultivars. In an effort to improve available genetic resources, expressed sequence tag simple sequence repeat (EST-SSR) and single nucleotide polymorphism (SNP) markers were developed and used to genotype the MRI x SB22 F2 mapping population, which segregates for response to downy mildew. SNP markers were generated from genomic sequences derived from double digestion restriction site associated DNA sequencing (ddRADseq). Disomic segregation was observed in both SNP and EST-SSR markers providing evidence of an O. basilicum allotetraploid genome structure and allowing for subsequent analysis of the mapping population as a diploid intercross. A dense linkage map was constructed using 42 EST-SSR and 1,847 SNP markers spanning 3,030.9 cM. Multiple quantitative trait loci (QTL) model (MQM) analysis identified three QTL that explained 37-55% of phenotypic variance associated with downy mildew response across three environments. A single major QTL, dm11.1 explained 21-28% of phenotypic variance and demonstrated dominant gene action. Two minor QTL dm9.1 and dm14.1 explained 5-16% and 4-18% of phenotypic variance, respectively. Evidence is provided for an additive effect between the two minor QTL and the major QTL dm11.1 increasing downy mildew susceptibility. Results indicate that ddRADseq-facilitated SNP and SSR marker genotyping is an effective approach for mapping the sweet basil genome.

  4. A first linkage map and downy mildew resistance QTL discovery for sweet basil (Ocimum basilicum) facilitated by double digestion restriction site associated DNA sequencing (ddRADseq)

    PubMed Central

    Honig, Josh; Vaiciunas, Jennifer; Koroch, Adolfina; Wyenandt, Christian; Bonos, Stacy; Simon, James

    2017-01-01

    Limited understanding of sweet basil (Ocimum basilicum L.) genetics and genome structure has reduced efficiency of breeding strategies. This is evidenced by the rapid, worldwide dissemination of basil downy mildew (Peronospora belbahrii) in the absence of resistant cultivars. In an effort to improve available genetic resources, expressed sequence tag simple sequence repeat (EST-SSR) and single nucleotide polymorphism (SNP) markers were developed and used to genotype the MRI x SB22 F2 mapping population, which segregates for response to downy mildew. SNP markers were generated from genomic sequences derived from double digestion restriction site associated DNA sequencing (ddRADseq). Disomic segregation was observed in both SNP and EST-SSR markers providing evidence of an O. basilicum allotetraploid genome structure and allowing for subsequent analysis of the mapping population as a diploid intercross. A dense linkage map was constructed using 42 EST-SSR and 1,847 SNP markers spanning 3,030.9 cM. Multiple quantitative trait loci (QTL) model (MQM) analysis identified three QTL that explained 37–55% of phenotypic variance associated with downy mildew response across three environments. A single major QTL, dm11.1 explained 21–28% of phenotypic variance and demonstrated dominant gene action. Two minor QTL dm9.1 and dm14.1 explained 5–16% and 4–18% of phenotypic variance, respectively. Evidence is provided for an additive effect between the two minor QTL and the major QTL dm11.1 increasing downy mildew susceptibility. Results indicate that ddRADseq-facilitated SNP and SSR marker genotyping is an effective approach for mapping the sweet basil genome. PMID:28922359

  5. Genotyping-by-sequencing targeting of a novel downy mildew resistance gene Pl 20 from wild Helianthus argophyllus for sunflower (Helianthus annuus L.).

    PubMed

    Ma, G J; Markell, S G; Song, Q J; Qi, L L

    2017-07-01

    Genotyping-by-sequencing revealed a new downy mildew resistance gene, Pl 20 , from wild Helianthus argophyllus located on linkage group 8 of the sunflower genome and closely linked to SNP markers that facilitate the marker-assisted selection of resistance genes. Downy mildew (DM), caused by Plasmopara halstedii, is one of the most devastating and yield-limiting diseases of sunflower. Downy mildew resistance identified in wild Helianthus argophyllus accession PI 494578 was determined to be effective against the predominant and virulent races of P. halstedii occurring in the United States. The evaluation of 114 BC1F2:3 families derived from the cross between HA 89 and PI 494578 against P. halstedii race 734 revealed that single dominant gene controls downy mildew resistance in the population. Genotyping-by-sequencing analysis conducted in the BC1F2 population indicated that the DM resistance gene derived from wild H. argophyllus PI 494578 is located on the upper end of the linkage group (LG) 8 of the sunflower genome, as was determined single nucleotide polymorphism (SNP) markers associated with DM resistance. Analysis of 11 additional SNP markers previously mapped to this region revealed that the resistance gene, named Pl 20 , co-segregated with four markers, SFW02745, SFW09076, S8_11272025, and S8_11272046, and is flanked by SFW04358 and S8_100385559 at an interval of 1.8 cM. The newly discovered P. halstedii resistance gene has been introgressed from wild species into cultivated sunflower to provide a novel gene with DM resistance. The homozygous resistant individuals were selected from BC2F2 progenies with the use of markers linked to the Pl 20 gene, and these lines should benefit the sunflower community for Helianthus improvement.

  6. Genetics and mapping of a novel downy mildew resistance gene, Pl(18), introgressed from wild Helianthus argophyllus into cultivated sunflower (Helianthus annuus L.).

    PubMed

    Qi, L L; Foley, M E; Cai, X W; Gulya, T J

    2016-04-01

    A novel downy mildew resistance gene, Pl(18), was introgressed from wild Helianthus argophyllus into cultivated sunflower and genetically mapped to linkage group 2 of the sunflower genome. The new germplasm, HA-DM1, carrying Pl(18) has been released to the public. Sunflower downy mildew (DM) is considered to be the most destructive foliar disease that has spread to every major sunflower-growing country of the world, except Australia. A new dominant downy mildew resistance gene (Pl 18) transferred from wild Helianthus argophyllus (PI 494573) into cultivated sunflower was mapped to linkage group (LG) 2 of the sunflower genome using bulked segregant analysis with 869 simple sequence repeat (SSR) markers. Phenotyping 142 BC1F2:3 families derived from the cross of HA 89 and H. argophyllus confirmed the single gene inheritance of resistance. Since no other Pl gene has been mapped to LG2, this gene was novel and designated as Pl (18). SSR markers CRT214 and ORS203 flanked Pl(18) at a genetic distance of 1.1 and 0.4 cM, respectively. Forty-six single nucleotide polymorphism (SNP) markers that cover the Pl(18) region were surveyed for saturation mapping of the region. Six co-segregating SNP markers were 1.2 cM distal to Pl(18), and another four co-segregating SNP markers were 0.9 cM proximal to Pl(18). The new BC2F4-derived germplasm, HA-DM1, carrying Pl(18) has been released to the public. This new line is highly resistant to all Plasmopara halstedii races identified in the USA providing breeders with an effective new source of resistance against downy mildew in sunflower. The molecular markers that were developed will be especially useful in marker-assisted selection and pyramiding of Pl resistance genes because of their close proximity to the gene and the availability of high-throughput SNP detection assays.

  7. Discovery and introgression of the wild sunflower-derived novel downy mildew resistance gene Pl 19 in confection sunflower (Helianthus annuus L.).

    PubMed

    Zhang, Z W; Ma, G J; Zhao, J; Markell, S G; Qi, L L

    2017-01-01

    A new downy mildew resistance gene, Pl 19 , was identified from wild Helianthus annuus accession PI 435414, introduced to confection sunflower, and genetically mapped to linkage group 4 of the sunflower genome. Wild Helianthus annuus accession PI 435414 exhibited resistance to downy mildew, which is one of the most destructive diseases to sunflower production globally. Evaluation of the 140 BC1F2:3 families derived from the cross of CMS CONFSCLB1 and PI 435414 against Plasmopara halstedii race 734 revealed that a single dominant gene controls downy mildew resistance in the population. Bulked segregant analysis conducted in the BC1F2 population with 860 simple sequence repeat (SSR) markers indicated that the resistance derived from wild H. annuus was associated with SSR markers located on linkage group (LG) 4 of the sunflower genome. To map and tag this resistance locus, designated Pl 19 , 140 BC1F2 individuals were used to construct a linkage map of the gene region. Two SSR markers, ORS963 and HT298, were linked to Pl 19 within a distance of 4.7 cM. After screening 27 additional single nucleotide polymorphism (SNP) markers previously mapped to this region, two flanking SNP markers, NSA_003564 and NSA_006089, were identified as surrounding the Pl 19 gene at a distance of 0.6 cM from each side. Genetic analysis indicated that Pl 19 is different from Pl 17 , which had previously been mapped to LG4, but is closely linked to Pl 17 . This new gene is highly effective against the most predominant and virulent races of P. halstedii currently identified in North America and is the first downy mildew resistance gene that has been transferred to confection sunflower. The selected resistant germplasm derived from homozygous BC2F3 progeny provides a novel gene for use in confection sunflower breeding programs.

  8. Research Review: Ann Markusen's Concept of Artistic Dividend

    ERIC Educational Resources Information Center

    Hornbacher, Judy, Ed.

    2008-01-01

    This issue of the "Research Review" features the work of Ann Markusen, Director of the Humphrey Institute's Project on Regional and Industrial Economics at the University of Minnesota. Through the six articles reviewed here, Markusen develops the concept of "The Artistic Dividend," examines the impact of Artists' Centers, explores how artists earn…

  9. STS-127 Crew Visit to Anne Beers Elementary

    NASA Image and Video Library

    2009-09-23

    Ajani Young, a fourth grade student at Anne Beers Elementary school, at podium, introduces the crew of STS-127 during their visit, Thursday, Sept. 24, 2009, in Washington. Seated from left are crew members, Chris Cassidy, Doug Hurley, Commander Mark Polansky, David Wolf, Tom Marshburn and Canadian Space Agency astronaut Julie Payette. Photo Credit: (NASA/Paul E. Alers)

  10. An Interview with Dr. Anne LaBastille.

    ERIC Educational Resources Information Center

    Griffin, Elizabeth

    1982-01-01

    Anne LaBastille, a role model for women interested in exploring the wilderness, gives hints on lessening the effects of acid rain, tells outdoor educators to encourage women to explore the wilderness and to take children outdoors to experience nature, and predicts a future economic slump for outdoor education. (LC)

  11. STS-127 Crew Visit to Anne Beers Elementary

    NASA Image and Video Library

    2009-09-23

    Students and teachers look on as STS-127 Commander Mark Polansky, seated left on stage talks about the mission to the International Space Station as other crew members Chris Cassidy, Doug Hurley, David Wolf, Tom Marshburn looks on during a visit to Anne Beers Elementary school, Thursday, Sept. 24, 2009, in Washington. Photo Credit: (NASA/Paul E. Alers)

  12. STS-127 Crew Visit to Anne Beers Elementary

    NASA Image and Video Library

    2009-09-23

    Canadian Space Agency astronaut Julie Payette, right, a mission specialist on STS-127, talks with two unidentified students during a visit to Anne Beers Elementary school, Thursday, Sept. 24, 2009, in Washington. Payette, along with the rest of the crew from STS-127, visited with students at the school Thursday. Photo Credit: (NASA/Paul E. Alers)

  13. STS-127 Crew Visit to Anne Beers Elementary

    NASA Image and Video Library

    2009-09-23

    Students, including Marcus Pratt, left, and Ajani Young, second from left, pay close attention as the crew from STS-127 makes their presentation during a visit to Anne Beers Elementary school, Thursday, Sept. 24, 2009, in Washington. Photo Credit: (NASA/Paul E. Alers)

  14. Decolonizing the Choctaws: Teaching LeAnne Howe's "Shell Shaker"

    ERIC Educational Resources Information Center

    Hollrah, Patrice

    2004-01-01

    "Shell Shaker" (2001) by LeAnne Howe (Choctaw) is a novel that gives students an opportunity to learn that the history and culture of the Choctaw Nation of Oklahoma are alive today. Winner of the Before Columbus Foundation American Book Award in 2002, the novel deals with two parallel stories that converge in the present, one about the eighteenth…

  15. Anne S. Young: Professor and Variable Star Observer Extraordinaire

    NASA Astrophysics Data System (ADS)

    Bracher, Katherine

    2011-05-01

    Anne Sewell Young (1871-1961) was one of the eight original members of the AAVSO, to which she contributed more than 6500 observations over 33 years. She also taught astronomy for 37 years at Mount Holyoke College; among her students was Helen Sawyer Hogg. This paper will look at her life and career both at Mount Holyoke and with the AAVSO.

  16. Literary Relations: Anne Shirley and Her American Cousins.

    ERIC Educational Resources Information Center

    Dawson, Janis

    2002-01-01

    Examines similarities between L.M. Montgomery's "Anne of Green Gables" and Kate Douglas Wiggin's "Rebecca of Sunnybrook Farm." Raises questions about the Canadianness of Montgomery's novel and considers the author's literary indebtedness to American authors and contemporary children's literature. Argues that as a literary work,…

  17. An Interview with Dr. Anne LaBastille.

    ERIC Educational Resources Information Center

    Griffin, Elizabeth

    1982-01-01

    Anne LaBastille, a role model for women interested in exploring the wilderness, gives hints on lessening the effects of acid rain, tells outdoor educators to encourage women to explore the wilderness and to take children outdoors to experience nature, and predicts a future economic slump for outdoor education. (LC)

  18. Decolonizing the Choctaws: Teaching LeAnne Howe's "Shell Shaker"

    ERIC Educational Resources Information Center

    Hollrah, Patrice

    2004-01-01

    "Shell Shaker" (2001) by LeAnne Howe (Choctaw) is a novel that gives students an opportunity to learn that the history and culture of the Choctaw Nation of Oklahoma are alive today. Winner of the Before Columbus Foundation American Book Award in 2002, the novel deals with two parallel stories that converge in the present, one about the eighteenth…

  19. Prediction aluminum corrosion inhibitor efficiency using artificial neural network (ANN)

    NASA Astrophysics Data System (ADS)

    Ebrahimi, Sh; Kalhor, E. G.; Nabavi, S. R.; Alamiparvin, L.; Pogaku, R.

    2016-06-01

    In this study, activity of some Schiff bases as aluminum corrosion inhibitor was investigated using artificial neural network (ANN). Hence, corrosion inhibition efficiency of Schiff bases (in any type) were gathered from different references. Then these molecules were drawn and optimized in Hyperchem software. Molecular descriptors generating and descriptors selection were fulfilled by Dragon software and principal component analysis (PCA) method, respectively. These structural descriptors along with environmental descriptors (ambient temperature, time of exposure, pH and the concentration of inhibitor) were used as input variables. Furthermore, aluminum corrosion inhibition efficiency was used as output variable. Experimental data were split into three sets: training set (for model building) and test set (for model validation) and simulation (for general model). Modeling was performed by Multiple linear regression (MLR) methods and artificial neural network (ANN). The results obtained in linear models showed poor correlation between experimental and theoretical data. However nonlinear model presented satisfactory results. Higher correlation coefficient of ANN (R > 0.9) revealed that ANN can be successfully applied for prediction of aluminum corrosion inhibitor efficiency of Schiff bases in different environmental conditions.

  20. Ann Turner: The Person, the Writer, and Her Historical Works.

    ERIC Educational Resources Information Center

    Fraser, Jason W.; White, David E.

    2000-01-01

    Offers a profile of Ann Turner. Examines her background, her approach to writing, and to writing historical fiction. Looks at aspects of Turner's historical writing and aspects of her style. Considers if there is a place for poetic language in historical fiction for children. (SR)

  1. Use the Story of Anne Hutchinson To Teach Historical Thinking.

    ERIC Educational Resources Information Center

    Mayer, Robert H.

    1999-01-01

    Compares three textbook accounts of Anne Hutchinson's life to show the importance of teaching students historical thinking. Presents a lesson that will enable students to analyze these historical accounts of Hutchinson and also to examine the interpretive nature of history. Provides two appendices. (CMK)

  2. Identification and characterization of potential NBS-encoding resistance genes and induction kinetics of a putative candidate gene associated with downy mildew resistance in Cucumis

    PubMed Central

    2010-01-01

    Background Due to the variation and mutation of the races of Pseudoperonospora cubensis, downy mildew has in recent years become the most devastating leaf disease of cucumber worldwide. Novel resistance to downy mildew has been identified in the wild Cucumis species, C. hystrix Chakr. After the successful hybridization between C. hystrix and cultivated cucumber (C. sativus L.), an introgression line (IL5211S) was identified as highly resistant to downy mildew. Nucleotide-binding site and leucine-rich repeat (NBS-LRR) genes are the largest class of disease resistance genes cloned from plant with highly conserved domains, which can be used to facilitate the isolation of candidate genes associated with downy mildew resistance in IL5211S. Results Degenerate primers that were designed based on the conserved motifs in the NBS domain of resistance (R) proteins were used to isolate NBS-type sequences from IL5211S. A total of 28 sequences were identified and named as cucumber (C. sativus = CS) resistance gene analogs as CSRGAs. Polygenetic analyses separated these sequences into four different classes. Quantitative real-time polymerase chain reaction (qRT-PCR) analysis showed that these CSRGAs expressed at different levels in leaves, roots, and stems. In addition, introgression from C. hystrix induced expression of the partial CSRGAs in cultivated cucumber, especially CSRGA23, increased four-fold when compared to the backcross parent CC3. Furthermore, the expression of CSRGA23 under P. cubensis infection and abiotic stresses was also analyzed at different time points. Results showed that the P. cubensis treatment and four tested abiotic stimuli, MeJA, SA, ABA, and H2O2, triggered a significant induction of CSRGA23 within 72 h of inoculation. The results indicate that CSRGA23 may play a critical role in protecting cucumber against P. cubensis through a signaling the pathway triggered by these molecules. Conclusions Four classes of NBS-type RGAs were successfully isolated

  3. Comparison of Conventional and ANN Models for River Flow Forecasting

    NASA Astrophysics Data System (ADS)

    Jain, A.; Ganti, R.

    2011-12-01

    Hydrological models are useful in many water resources applications such as flood control, irrigation and drainage, hydro power generation, water supply, erosion and sediment control, etc. Estimates of runoff are needed in many water resources planning, design development, operation and maintenance activities. River flow is generally estimated using time series or rainfall-runoff models. Recently, soft artificial intelligence tools such as Artificial Neural Networks (ANNs) have become popular for research purposes but have not been extensively adopted in operational hydrological forecasts. There is a strong need to develop ANN models based on real catchment data and compare them with the conventional models. In this paper, a comparative study has been carried out for river flow forecasting using the conventional and ANN models. Among the conventional models, multiple linear, and non linear regression, and time series models of auto regressive (AR) type have been developed. Feed forward neural network model structure trained using the back propagation algorithm, a gradient search method, was adopted. The daily river flow data derived from Godavari Basin @ Polavaram, Andhra Pradesh, India have been employed to develop all the models included here. Two inputs, flows at two past time steps, (Q(t-1) and Q(t-2)) were selected using partial auto correlation analysis for forecasting flow at time t, Q(t). A wide range of error statistics have been used to evaluate the performance of all the models developed in this study. It has been found that the regression and AR models performed comparably, and the ANN model performed the best amongst all the models investigated in this study. It is concluded that ANN model should be adopted in real catchments for hydrological modeling and forecasting.

  4. Differential Recognition of Highly Divergent Downy Mildew Avirulence Gene Alleles by RPP1 Resistance Genes from Two Arabidopsis Lines

    PubMed Central

    Rehmany, Anne P.; Gordon, Anna; Rose, Laura E.; Allen, Rebecca L.; Armstrong, Miles R.; Whisson, Stephen C.; Kamoun, Sophien; Tyler, Brett M.; Birch, Paul R.J.; Beynon, Jim L.

    2005-01-01

    The perception of downy mildew avirulence (Arabidopsis thaliana Recognized [ATR]) gene products by matching Arabidopsis thaliana resistance (Recognition of Peronospora parasitica [RPP]) gene products triggers localized cell death (a hypersensitive response) in the host plant, and this inhibits pathogen development. The oomycete pathogen, therefore, is under selection pressure to alter the form of these gene products to prevent detection. That the pathogen maintains these genes indicates that they play a positive role in pathogen survival. Despite significant progress in cloning plant RPP genes and characterizing essential plant components of resistance signaling pathways, little progress has been made in identifying the oomycete molecules that trigger them. Concluding a map-based cloning effort, we have identified an avirulence gene, ATR1NdWsB, that is detected by RPP1 from the Arabidopsis accession Niederzenz in the cytoplasm of host plant cells. We report the cloning of six highly divergent alleles of ATR1NdWsB from eight downy mildew isolates and demonstrate that the ATR1NdWsB alleles are differentially recognized by RPP1 genes from two Arabidopsis accessions (Niederzenz and Wassilewskija). RPP1-Nd recognizes a single allele of ATR1NdWsB; RPP1-WsB also detects this allele plus three additional alleles with divergent sequences. The Emco5 isolate expresses an allele of ATR1NdWsB that is recognized by RPP1-WsB, but the isolate evades detection in planta. Although the Cala2 isolate is recognized by RPP1-WsA, the ATR1NdWsB allele from Cala2 is not, demonstrating that RPP1-WsA detects a novel ATR gene product. Cloning of ATR1NdWsB has highlighted the presence of a highly conserved novel amino acid motif in avirulence proteins from three different oomycetes. The presence of the motif in additional secreted proteins from plant pathogenic oomycetes and its similarity to a host-targeting signal from malaria parasites suggest a conserved role in pathogenicity. PMID

  5. Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines.

    PubMed

    Rehmany, Anne P; Gordon, Anna; Rose, Laura E; Allen, Rebecca L; Armstrong, Miles R; Whisson, Stephen C; Kamoun, Sophien; Tyler, Brett M; Birch, Paul R J; Beynon, Jim L

    2005-06-01

    The perception of downy mildew avirulence (Arabidopsis thaliana Recognized [ATR]) gene products by matching Arabidopsis thaliana resistance (Recognition of Peronospora parasitica [RPP]) gene products triggers localized cell death (a hypersensitive response) in the host plant, and this inhibits pathogen development. The oomycete pathogen, therefore, is under selection pressure to alter the form of these gene products to prevent detection. That the pathogen maintains these genes indicates that they play a positive role in pathogen survival. Despite significant progress in cloning plant RPP genes and characterizing essential plant components of resistance signaling pathways, little progress has been made in identifying the oomycete molecules that trigger them. Concluding a map-based cloning effort, we have identified an avirulence gene, ATR1NdWsB, that is detected by RPP1 from the Arabidopsis accession Niederzenz in the cytoplasm of host plant cells. We report the cloning of six highly divergent alleles of ATR1NdWsB from eight downy mildew isolates and demonstrate that the ATR1NdWsB alleles are differentially recognized by RPP1 genes from two Arabidopsis accessions (Niederzenz and Wassilewskija). RPP1-Nd recognizes a single allele of ATR1NdWsB; RPP1-WsB also detects this allele plus three additional alleles with divergent sequences. The Emco5 isolate expresses an allele of ATR1NdWsB that is recognized by RPP1-WsB, but the isolate evades detection in planta. Although the Cala2 isolate is recognized by RPP1-WsA, the ATR1NdWsB allele from Cala2 is not, demonstrating that RPP1-WsA detects a novel ATR gene product. Cloning of ATR1NdWsB has highlighted the presence of a highly conserved novel amino acid motif in avirulence proteins from three different oomycetes. The presence of the motif in additional secreted proteins from plant pathogenic oomycetes and its similarity to a host-targeting signal from malaria parasites suggest a conserved role in pathogenicity.

  6. Proposed Ice Flow, Given 200m and 400m Additional Ice in the Allan Hills Region, Antarctica: Implications for Meteorite Concentration

    NASA Astrophysics Data System (ADS)

    Traub-Metlay, S.; Cassidy, W. A.

    1992-07-01

    The Allan Hills-David Glacier region contains some of the most highly populated meteorite stranding surfaces in Antarctica. Nearly 2000 meteorites have to date been collected from the icefields associated with the Allan Hills, and nearly 1500 from areas around Elephant Moraine. While much attention has been focused on the current geological and glaciological conditions of these stranding surfaces, less work has been done concerning what they may have looked like in the past, when ice thicknesses may have been greater. In this study, conjectural maps of the current Allan Hills area with 200 meters and 400 meters of additional ice cover each are analyzed for probable regional and local ice flow patterns. A dramatic decrease in ice thickness over a relatively brief period of time could result either from climatic change or a geologically rapid regional uplift. Delisle and Sievers (1991) noted that the valley between the Allan Hills Main Icefield and the Allan Hills resembles a half-graben resulting from east-west extensional tectonics, and that the mesa-like bedrock features associated with the Near Western and Mid Western Icefields resemble fault blocks. They concluded that the Allan Hills area icefields may have become active stranding surfaces as a result of a regional uplift within the past 1-2 million years, assuming a current rate of uplift in the Allan Hills region of ~100 meters/million years. Whether the cause was climatic or tectonic, generalized maps of current ice contours plus 400 and 200 meters ice may provide views of what the Allan Hills region looked like just before activation of the modern meteorite stranding surfaces (Figs. 1 and 2). At an ice thickness greater by 400 meters, ice could flow smoothly over the Allan Hills and would drain down to the Mawson Glacier via the Odell Glacier, east of the Allan Hills; down the Manhaul Bay depression between the east and west arms of Allan Hills; and down the half-graben discovered by Delisle and Sievers

  7. Novel SLC16A2 mutations in patients with Allan-Herndon-Dudley syndrome

    PubMed Central

    Shimojima, Keiko; Maruyama, Koichi; Kikuchi, Masahiro; Imai, Ayako; Inoue, Ken; Yamamoto, Toshiyuki

    2016-01-01

    Summary Allan-Herndon-Dudley syndrome (AHDS) is an X-linked disorder caused by impaired thyroid hormone transporter. Patients with AHDS usually exhibit severe motor developmental delay, delayed myelination of the brain white matter, and elevated T3 levels in thyroid tests. Neurological examination of two patients with neurodevelopmental delay revealed generalized hypotonia, and not paresis, as the main neurological finding. Nystagmus and dyskinesia were not observed. Brain magnetic resonance imaging demonstrated delayed myelination in early childhood in both patients. Nevertheless, matured myelination was observed at 6 years of age in one patient. Although the key finding for AHDS is elevated free T3, one of the patients showed a normal T3 level in childhood, misleading the diagnosis of AHDS. Genetic analysis revealed two novel SLC16A2 mutations, p.(Gly122Val) and p.(Gly221Ser), confirming the AHDS diagnosis. These results indicate that AHDS diagnosis is sometimes challenging owing to clinical variability among patients. PMID:27672545

  8. THE DEAD-LIVING-MOTHER: MARIE BONAPARTE'S INTERPRETATION OF EDGAR ALLAN POE'S SHORT STORIES.

    PubMed

    Obaid, Francisco Pizarro

    2016-06-01

    Princess Marie Bonaparte is an important figure in the history of psychoanalysis, remembered for her crucial role in arranging Freud's escape to safety in London from Nazi Vienna, in 1938. This paper connects us to Bonaparte's work on Poe's short stories. Founded on concepts of Freudian theory and an exhaustive review of the biographical facts, Marie Bonaparte concluded that the works of Edgar Allan Poe drew their most powerful inspirational force from the psychological consequences of the early death of the poet's mother. In Bonaparte's approach, which was powerfully influenced by her recognition of the impact of the death of her own mother when she was born-an understanding she gained in her analysis with Freud-the thesis of the dead-living-mother achieved the status of a paradigmatic key to analyze and understand Poe's literary legacy. This paper explores the background and support of this hypothesis and reviews Bonaparte's interpretation of Poe's most notable short stories, in which extraordinary female figures feature in the narrative.

  9. A legacy in 20th-century medicine: Robert Allan Phillips and the taming of cholera.

    PubMed

    Savarino, Stephen J

    2002-09-15

    The legacy of Captain Robert Allan Phillips (1906-1976) was to establish effective, evidence-based rehydration methods for the treatment of cholera. As a Navy Lieutenant at the Rockefeller Institute for Medical Research (New York, New York) during World War II, Phillips developed a field method for the rapid assessment of fluid loss in wounded servicemen. After the war, he championed the establishment of United States Naval Medical Research Unit (NAMRU)-3 (Cairo; 1946) and NAMRU-2 (Taipei; 1955), serving at the helm of both units. Phillips embarked on cholera studies during the 1947 Egyptian cholera epidemic and brought them to maturity at NAMRU-2 (1958-1965), elucidating the pathophysiologic derangements induced by cholera and developing highly efficacious methods of intravenous rehydration. His conception of a simpler cholera treatment was realized in the late 1960s with the development of glucose-based oral rehydration therapy, a monumental breakthrough to which many other investigators made vital contributions. Today, these simple advances have been integrated into everyday medical practice across the globe, saving millions of lives annually.

  10. Observation, Inference, and Imagination: Elements of Edgar Allan Poe's Philosophy of Science

    NASA Astrophysics Data System (ADS)

    Gelfert, Axel

    2014-03-01

    Edgar Allan Poe's standing as a literary figure, who drew on (and sometimes dabbled in) the scientific debates of his time, makes him an intriguing character for any exploration of the historical interrelationship between science, literature and philosophy. His sprawling `prose-poem' Eureka (1848), in particular, has sometimes been scrutinized for anticipations of later scientific developments. By contrast, the present paper argues that it should be understood as a contribution to the raging debates about scientific methodology at the time. This methodological interest, which is echoed in Poe's `tales of ratiocination', gives rise to a proposed new mode of—broadly abductive—inference, which Poe attributes to the hybrid figure of the `poet-mathematician'. Without creative imagination and intuition, Science would necessarily remain incomplete, even by its own standards. This concern with imaginative (abductive) inference ties in nicely with his coherentism, which grants pride of place to the twin virtues of Simplicity and Consistency, which must constrain imagination lest it degenerate into mere fancy.

  11. Atmospheric composition 1 million years ago from blue ice in the Allan Hills, Antarctica

    PubMed Central

    Higgins, John A.; Kurbatov, Andrei V.; Spaulding, Nicole E.; Brook, Ed; Introne, Douglas S.; Chimiak, Laura M.; Yan, Yuzhen; Mayewski, Paul A.; Bender, Michael L.

    2015-01-01

    Here, we present direct measurements of atmospheric composition and Antarctic climate from the mid-Pleistocene (∼1 Ma) from ice cores drilled in the Allan Hills blue ice area, Antarctica. The 1-Ma ice is dated from the deficit in 40Ar relative to the modern atmosphere and is present as a stratigraphically disturbed 12-m section at the base of a 126-m ice core. The 1-Ma ice appears to represent most of the amplitude of contemporaneous climate cycles and CO2 and CH4 concentrations in the ice range from 221 to 277 ppm and 411 to 569 parts per billion (ppb), respectively. These concentrations, together with measured δD of the ice, are at the warm end of the field for glacial–interglacial cycles of the last 800 ky and span only about one-half of the range. The highest CO2 values in the 1-Ma ice fall within the range of interglacial values of the last 400 ka but are up to 7 ppm higher than any interglacial values between 450 and 800 ka. The lowest CO2 values are 30 ppm higher than during any glacial period between 450 and 800 ka. This study shows that the coupling of Antarctic temperature and atmospheric CO2 extended into the mid-Pleistocene and demonstrates the feasibility of discontinuously extending the current ice core record beyond 800 ka by shallow coring in Antarctic blue ice areas. PMID:25964367

  12. Twenty-Five Years of Applications of the Modified Allan Variance in Telecommunications.

    PubMed

    Bregni, Stefano

    2016-04-01

    The Modified Allan Variance (MAVAR) was originally defined in 1981 for measuring frequency stability in precision oscillators. Due to its outstanding accuracy in discriminating power-law noise, it attracted significant interest among telecommunications engineers since the early 1990s, when it was approved as a standard measure in international standards, redressed as Time Variance (TVAR), for specifying the time stability of network synchronization signals and of equipment clocks. A dozen years later, the usage of MAVAR was also introduced for Internet traffic analysis to estimate self-similarity and long-range dependence. Further, in this field, it demonstrated superior accuracy and sensitivity, better than most popular tools already in use. This paper surveys the last 25 years of progress in extending the field of application of the MAVAR in telecommunications. First, the rationale and principles of the MAVAR are briefly summarized. Its adaptation as TVAR for specification of timing stability is presented. The usage of MAVAR/TVAR in telecommunications standards is reviewed. Examples of measurements on real telecommunications equipment clocks are presented, providing an overview on their actual performance in terms of MAVAR. Moreover, applications of MAVAR to network traffic analysis are surveyed. The superior accuracy of MAVAR in estimating long-range dependence is emphasized by highlighting some remarkable practical examples of real network traffic analysis.

  13. Atmospheric composition 1 million years ago from blue ice in the Allan Hills, Antarctica.

    PubMed

    Higgins, John A; Kurbatov, Andrei V; Spaulding, Nicole E; Brook, Ed; Introne, Douglas S; Chimiak, Laura M; Yan, Yuzhen; Mayewski, Paul A; Bender, Michael L

    2015-06-02

    Here, we present direct measurements of atmospheric composition and Antarctic climate from the mid-Pleistocene (∼1 Ma) from ice cores drilled in the Allan Hills blue ice area, Antarctica. The 1-Ma ice is dated from the deficit in (40)Ar relative to the modern atmosphere and is present as a stratigraphically disturbed 12-m section at the base of a 126-m ice core. The 1-Ma ice appears to represent most of the amplitude of contemporaneous climate cycles and CO2 and CH4 concentrations in the ice range from 221 to 277 ppm and 411 to 569 parts per billion (ppb), respectively. These concentrations, together with measured δD of the ice, are at the warm end of the field for glacial-interglacial cycles of the last 800 ky and span only about one-half of the range. The highest CO2 values in the 1-Ma ice fall within the range of interglacial values of the last 400 ka but are up to 7 ppm higher than any interglacial values between 450 and 800 ka. The lowest CO2 values are 30 ppm higher than during any glacial period between 450 and 800 ka. This study shows that the coupling of Antarctic temperature and atmospheric CO2 extended into the mid-Pleistocene and demonstrates the feasibility of discontinuously extending the current ice core record beyond 800 ka by shallow coring in Antarctic blue ice areas.

  14. The Allan Burns mummies: A history and future prospect of an anatomical collection.

    PubMed

    Lee, J; Štrkalj, G

    2017-08-31

    Acquiring adequate resources for anatomy education has represented a challenge throughout the discipline's long history. A significant number of collections housed in anatomy departments contain human tissue of unknown provenance with some obtained in morally dubious ways. This paper outlines the history and future prospects of one such anatomical assemblage - the Burns Anatomical Collection, currently housed at the University of Maryland (UM). The collection originally contained more than 1000 anatomically prepared mummified human remains. They were produced by the renowned Scottish anatomist Allan Burns in Glasgow in the late eighteenth and early nineteenth centuries. The prepared cadavers became a commodity and after Burns' death, were acquired by his pupil Granville Pattison, who later sold them to the UM. While the origin of these human remains is unknown, historical data suggests that most of the cadavers for the collection were obtained through grave robbing. While intensely used in anatomy teaching in the nineteenth century, specimens from the collection should now be treated primarily as historical artifacts, appropriate only for teaching medical history and ethics. Other perspectives may include repatriating and reburying the human remains and providing a memorial service. Most importantly, this collection and others similar to it should initiate dialog and reflection on the ethical aspects of the past and present medical practice.

  15. Metal with anomalously low Ni and Ge concentrations in the Allan Hills A77081 winonaite

    NASA Technical Reports Server (NTRS)

    Kracher, Alfred

    1988-01-01

    The Ge content of metal in the Allan Hills A77081 winonaite was determined by high-sensitivity electron microprobe analysis. By optimizing analytical conditions for Ge determination, a detection limit of about 75 ppm could be achieved. In A77081 some small kamacite grains contain less Ni and Ge and more Co than coarse-grained metal. These small grains are always associated with sulfide, raising the possibility that anomalous metal is related to eutectic melting. However, when published partition coefficients for Ni and Ge in the Fe-Ni-S system are used to model fractionation of these elements during eutectic melting, one finds that secondary metal should be enriched in Ni and depleted in Ge. Thus, the positive Ni-Ge correlation found in this study is the opposite of the expected trend. No explanation for this discrepancy has yet been found. Nonetheless, the existence of anomalous metal is an indication that A77081, and probably other winonaites as well, have undergone some fractionation. This supports the notion that the high-temperature history of winonaites is related to the formation of IAB iron meteorites, whose silicate inclusions are very similar to winonaites.

  16. Application of the Allan Variance to Time Series Analysis in Astrometry and Geodesy: A Review.

    PubMed

    Malkin, Zinovy

    2016-04-01

    The Allan variance (AVAR) was introduced 50 years ago as a statistical tool for assessing the frequency standards deviations. For the past decades, AVAR has increasingly been used in geodesy and astrometry to assess the noise characteristics in geodetic and astrometric time series. A specific feature of astrometric and geodetic measurements, as compared with clock measurements, is that they are generally associated with uncertainties; thus, an appropriate weighting should be applied during data analysis. In addition, some physically connected scalar time series naturally form series of multidimensional vectors. For example, three station coordinates time series X, Y, and Z can be combined to analyze 3-D station position variations. The classical AVAR is not intended for processing unevenly weighted and/or multidimensional data. Therefore, AVAR modifications, namely weighted AVAR (WAVAR), multidimensional AVAR (MAVAR), and weighted multidimensional AVAR (WMAVAR), were introduced to overcome these deficiencies. In this paper, a brief review is given of the experience of using AVAR and its modifications in processing astrogeodetic time series.

  17. Groundwater Pollution Source Identification Using Trained ANN Model

    NASA Astrophysics Data System (ADS)

    Ayaz, M.; Srivastava, R.

    2012-04-01

    Remediation of groundwater contamination is one of the foremost challenges for the present generation. Exact knowledge of the location of the pollution source is essential to tackle this problem. Pollution sources have several important characteristics - location, strength and release period - that can be employed to single out a specific source. Breakthrough curves, which are the temporal distribution of concentration data at a given location, can be utilized to identify the location of an unknown pollution source. However, there is a lag between the time when the readings are taken at the observation well and the time when the source becomes active. In real field situations there is little or no information about this lag. We develop a methodology to identify the location of a pollution source, without using the lag time or the source strength as known parameters, by using an Artificial Neural Network (ANN) based technique. Breakthrough curves are primarily dependent on four variables, namely, source location, strength, release period and lag time. To develop an ANN model, the impact because of strength and lag time has been eliminated in a step-wise fashion. First, the breakthrough curve is normalized, between 0 and 1, by dividing concentration data by the maximum concentration value observed. Then, only the portion of the breakthrough curve near the peak is used as an input to train the ANN model. It has been shown that the breakthrough curve under these conditions is only dependent on the source location and release period, and is unique for a given combination of source strength and release period. An ANN model with one hidden layer is trained using the Levenberg-Marquardt algorithm. The modified breakthrough curve is used as an input to the ANN model while the source strength and release period constitute the output. The number of neurons in the hidden layer has been selected by minimizing the mean squared error for different number of hidden neurons

  18. The role of testosterone in male downy woodpeckers in winter home range use, mate interactions and female foraging behaviour.

    PubMed

    Kellam, James S; Lucas, Jeffrey R; Wingfield, John C

    2006-03-01

    Studies of the role of testosterone (T) in birds have typically focused on sexual or aggressive behaviours of males during the breeding period, but males of nonmigratory species may invest in mate and territory long before breeding, and the influence of T in facilitating nonbreeding-season behaviours is poorly understood. We gave free-living male downy woodpeckers, Picoides pubescens, T-implants during the winter to determine whether elevated levels of T increased a male's ability to exclusively occupy territory-based resources, and whether elevated T strengthened a male's investment in an existing pair bond relationship. We also explored how a female's foraging efficiency might be affected by her mate's behaviour if he had elevated T. We found little difference between control and T-implanted males with regard to home range exclusivity. Surprisingly, male-male display rates were significantly lower in T-implanted males than in controls. Regarding male-female interactions, T-implanted males that experienced high incursion rates from other males maintained more frequent spatial association with their mate, suggesting that T facilitates male behaviours that could restrict the mate's access to other male birds. Female mates of T-males showed reduced foraging rates, but because male-female aggression was similar between treatment groups, the cause for this reduction is unknown. The results indicate that exogenous T during winter affects a variety of behaviours in male woodpeckers, and proximate influences on pair bond maintenance in winter may be a fruitful avenue for future research.

  19. Identification of downy mildew resistance gene candidates by positional cloning in maize (Zea mays subsp. mays; Poaceae)1

    PubMed Central

    Kim, Jae Yoon; Moon, Jun-Cheol; Kim, Hyo Chul; Shin, Seungho; Song, Kitae; Kim, Kyung-Hee; Lee, Byung-Moo

    2017-01-01

    Premise of the study: Positional cloning in combination with phenotyping is a general approach to identify disease-resistance gene candidates in plants; however, it requires several time-consuming steps including population or fine mapping. Therefore, in the present study, we suggest a new combined strategy to improve the identification of disease-resistance gene candidates. Methods and Results: Downy mildew (DM)–resistant maize was selected from five cultivars using a spreader row technique. Positional cloning and bioinformatics tools were used to identify the DM-resistance quantitative trait locus marker (bnlg1702) and 47 protein-coding gene annotations. Eventually, five DM-resistance gene candidates, including bZIP34, Bak1, and Ppr, were identified by quantitative reverse-transcription PCR (RT-PCR) without fine mapping of the bnlg1702 locus. Conclusions: The combined protocol with the spreader row technique, quantitative trait locus positional cloning, and quantitative RT-PCR was effective for identifying DM-resistance candidate genes. This cloning approach may be applied to other whole-genome-sequenced crops or resistance to other diseases. PMID:28224059

  20. The Plasmodesmal Protein PDLP1 Localises to Haustoria-Associated Membranes during Downy Mildew Infection and Regulates Callose Deposition

    PubMed Central

    Sklenar, Jan; Findlay, Kim; Piquerez, Sophie J. M.; Jones, Alexandra M. E.; Robatzek, Silke; Jones, Jonathan D. G.; Faulkner, Christine

    2014-01-01

    The downy mildew pathogen Hyaloperonospora arabidopsidis (Hpa) is a filamentous oomycete that invades plant cells via sophisticated but poorly understood structures called haustoria. Haustoria are separated from the host cell cytoplasm and surrounded by an extrahaustorial membrane (EHM) of unknown origin. In some interactions, including Hpa-Arabidopsis, haustoria are progressively encased by host-derived, callose-rich materials but the molecular mechanisms by which callose accumulates around haustoria remain unclear. Here, we report that PLASMODESMATA-LOCATED PROTEIN 1 (PDLP1) is expressed at high levels in Hpa infected cells. Unlike other plasma membrane proteins, which are often excluded from the EHM, PDLP1 is located at the EHM in Hpa-infected cells prior to encasement. The transmembrane domain and cytoplasmic tail of PDLP1 are sufficient to convey this localization. PDLP1 also associates with the developing encasement but this association is lost when encasements are fully mature. We found that the pdlp1,2,3 triple mutant is more susceptible to Hpa while overexpression of PDLP1 enhances plant resistance, suggesting that PDLPs enhance basal immunity against Hpa. Haustorial encasements are depleted in callose in pdlp1,2,3 mutant plants whereas PDLP1 over-expression elevates callose deposition around haustoria and across the cell surface. These data indicate that PDLPs contribute to callose encasement of Hpa haustoria and suggests that the deposition of callose at haustoria may involve similar mechanisms to callose deposition at plasmodesmata. PMID:25393742

  1. An ANN model for treatment prediction in HBV patients

    PubMed Central

    Iqbal, Sajid; Masood, Khalid; Jafer, Osman

    2011-01-01

    Two types of antiviral treatments, namely, interferon and nucleoside/nucleotide analogues are available for hepatitis infections. The selection of drug and dose determined using known pharmacokinetics and pharmacodynamics data is important. The lack of sufficient information for pharmacokinetics of a drug may not produce the desired results. Artificial neural network (ANN) provides a novel model-independent approach to pharmacokinetics and pharmacodynamics data. ANN model is created by supervised learning of 90 patients sample to predict the treatment strategy (lamivudine only and Lamivudine + Interferon) on the basis of viral load, liver function test, visit number, treatment duration, ethnic area, sex, and age. The model was trained with 68 (77.3%) samples and tested with 20 (22.7%) samples. The model produced 92% accuracy with 92.8% sensitivity and 83.3% specificity. PMID:21738322

  2. Jo Ann Rinaudo, PhD | Division of Cancer Prevention

    Cancer.gov

    Dr. Jo Ann Rinaudo is a Program Director in the Cancer Biomarkers Research Group in the Division of Cancer Prevention at the National Cancer Institute. She received a doctoral degree from the University of Toronto, where she studied chemical carcinogenesis in the liver. She was in the pathology department and has a broad background in human disease. Post-graduate training included further studies on the cell cycle during liver regeneration and cancer. |

  3. STS-127 Crew Visit to Anne Beers Elementary

    NASA Image and Video Library

    2009-09-23

    STS-127 Commander Mark Polansky, center, speaks to students during a visit to Anne Beers Elementary school, Thursday, Sept. 24, 2009, in Washington. Polansky, along with the rest of the crew from STS-127, visited with students at the school Thursday. Seated from left are Canadian Space Agency astronaut Julie Payette, Chris Cassidy, Doug Hurley, David Wolf and Tom Marshburn. Photo Credit: (NASA/Paul E. Alers)

  4. Anne S. Young: Professor and Variable Star Observer Extraordinaire

    NASA Astrophysics Data System (ADS)

    Bracher, K.

    2012-06-01

    One of the original eight members of the AAVSO, but not well known today, was Professor Anne Sewell Young of Mount Holyoke College. Miss Young taught there for thirty-seven years, and trained many women astronomers during the first third of the 20th century. This paper will attempt to present her life as an inspiring teacher, as well as a contributor of more than 6,500 variable star observations to the AAVSO.

  5. A Hybrid FEM-ANN Approach for Slope Instability Prediction

    NASA Astrophysics Data System (ADS)

    Verma, A. K.; Singh, T. N.; Chauhan, Nikhil Kumar; Sarkar, K.

    2016-09-01

    Assessment of slope stability is one of the most critical aspects for the life of a slope. In any slope vulnerability appraisal, Factor Of Safety (FOS) is the widely accepted index to understand, how close or far a slope from the failure. In this work, an attempt has been made to simulate a road cut slope in a landslide prone area in Rudrapryag, Uttarakhand, India which lies near Himalayan geodynamic mountain belt. A combination of Finite Element Method (FEM) and Artificial Neural Network (ANN) has been adopted to predict FOS of the slope. In ANN, a three layer, feed- forward back-propagation neural network with one input layer and one hidden layer with three neurons and one output layer has been considered and trained using datasets generated from numerical analysis of the slope and validated with new set of field slope data. Mean absolute percentage error estimated as 1.04 with coefficient of correlation between the FOS of FEM and ANN as 0.973, which indicates that the system is very vigorous and fast to predict FOS for any slope.

  6. Coupling SWAT and ANN models for enhanced daily streamflow prediction

    NASA Astrophysics Data System (ADS)

    Noori, Navideh; Kalin, Latif

    2016-02-01

    To improve daily flow prediction in unmonitored watersheds a hybrid model was developed by combining a quasi-distributed watershed model and artificial neural network (ANN). Daily streamflow data from 29 nearby watersheds in and around the city of Atlanta, Southeastern United States, with leave-one-site-out jackknifing technique were used to build the flow predictive models during warm and cool seasons. Daily streamflow was first simulated with the Soil and Water Assessment Tool (SWAT) and then the SWAT simulated baseflow and stormflow were used as inputs to ANN. Out of the total 29 test watersheds, 62% and 83% of them had Nash-Sutcliffe values above 0.50 during the cool and warm seasons, respectively (considered good or better). As the percent forest cover or the size of test watershed increased, the performances of the models gradually decreased during both warm and cool seasons. This indicates that the developed models work better in urbanized watersheds. In addition, SWAT and SWAT Calibration Uncertainty Procedure (SWAT-CUP) program were run separately for each station to compare the flow prediction accuracy of the hybrid approach to SWAT. Only 31% of the sites during the calibration and 34% of validation runs had ENASH values ⩾0.50. This study showed that coupling ANN with semi-distributed models can lead to improved daily streamflow predictions in ungauged watersheds.

  7. Lactuca saligna, a non-host for lettuce downy mildew ( Bremia lactucae), harbors a new race-specific Dm gene and three QTLs for resistance.

    PubMed

    Jeuken, M.; Lindhout, P.

    2002-08-01

    Lactuca sativa (lettuce) is susceptible to Bremia lactucae (downy mildew). In cultivated and wild Lactuca species, Dm genes have been identified that confer race-specific resistance. However, these genes were soon rendered ineffective by adaptation of the pathogen. Lactuca saligna (wild lettuce) is resistant to all downy mildew races and can be considered as a non-host. Therefore, L. saligna might be an alternative source for a more-durable resistance to downy mildew in lettuce. In order to analyze this resistance, we have developed an F(2) population based on a resistant L. saligna x susceptible L. sativa cross. This F(2) population was fingerprinted with AFLP markers and tested for resistance to two Bremia races NL14 and NL16. The F(2) population showed a wide and continuous range of resistance levels from completely resistant to completely susceptible. By comparison of disease tests, we observed a quantitative resistance against both Bremia races as well as a race-specific resistance to Bremia race NL16 and not to NL14. QTL mapping revealed a qualitative gene ( R39) involved in the race-specific resistance and three QTLs ( RBQ1, RBQ2 and RBQ3) involved in the quantitative resistance. The qualitative gene R39 is a dominant gene that gives nearly complete resistance to race NL16 in L. saligna CGN 5271 and therefore it showed features similar to Dm genes. The three QTLs explained 51% of the quantitative resistance against NL14, which indicated that probably only the major QTLs have been detected in this F(2) population. The perspectives for breeding for durable resistance are discussed.

  8. Molecular cloning of a coiled-coil-nucleotide-binding-site-leucine-rich repeat gene from pearl millet and its expression pattern in response to the downy mildew pathogen.

    PubMed

    Veena, Mariswamy; Melvin, Prasad; Prabhu, Sreedhara Ashok; Shailasree, Sekhar; Shetty, Hunthrike Shekar; Kini, Kukkundoor Ramachandra

    2016-03-01

    Downy mildew caused by Sclerospora graminicola is a devastating disease of pearl millet. Based on candidate gene approach, a set of 22 resistance gene analogues were identified. The clone RGPM 301 (AY117410) containing a partial sequence shared 83% similarity to rice R-proteins. A full-length R-gene RGA RGPM 301 of 3552 bp with 2979 bp open reading frame encoding 992 amino acids was isolated by the degenerate primers and rapid amplification of cDNA ends polymerase chain reaction (RACE-PCR) approach. It had a molecular mass of 113.96 kDa and isoelectric point (pI) of 8.71. The sequence alignment and phylogenetic analysis grouped it to a non-TIR NBS LRR group. The quantitative real-time PCR (qRT-PCR) analysis revealed higher accumulation of the transcripts following inoculation with S. graminicola in the resistant cultivar (IP18296) compared to susceptible cultivar (7042S). Further, significant induction in the transcript levels were observed when treated with abiotic elicitor β-aminobutyric acid (BABA) and biotic elicitor Pseudomonas fluorescens. Exogenous application of phytohormones jasmonic acid or salicylic acid also up-regulated the expression levels of RGA RGPM 301. The treatment of cultivar IP18296 with mitogen-activated protein kinase (MPK) inhibitors (PD98059 and U0126) suppressed the levels of RGA RGPM 301. A 3.5 kb RGA RGPM 301 which is a non-TIR NBS-LRR protein was isolated from pearl millet and its up-regulation during downy mildew interaction was demonstrated by qRT-PCR. These studies indicate a role for this RGA in pearl millet downy mildew interaction.

  9. Exogenous Trehalose Treatment Enhances the Activities of Defense-Related Enzymes and Triggers Resistance against Downy Mildew Disease of Pearl Millet.

    PubMed

    Govind, Sharathchandra R; Jogaiah, Sudisha; Abdelrahman, Mostafa; Shetty, Hunthrike S; Tran, Lam Son P

    2016-01-01

    In recent years, diverse physiological functions of various sugars are the subject of investigations. Their roles in signal transduction in plant responses to adverse biotic and abiotic stress conditions have become apparent, and growing scientific evidence has indicated that disaccharides like sucrose and trehalose mediate plant defense responses in similar way as those induced by elicitors against the pathogens. Trehalose is a well-known metabolic osmoregulator, stress-protectant and non-reducing disaccharide existing in a variety of organisms, including fungi, bacteria, and plants. Commercially procured trehalose was applied to seeds of susceptible pearl millet (Pennisetum glaucum) cultivar "HB3," and tested for its ability to reduce downy mildew disease incidence by induction of resistance. Seed treatment with trehalose at 200 mM for 9 h recorded 70.25% downy mildew disease protection, followed by those with 100 and 50 mM trehalose which offered 64.35 and 52.55% defense, respectively, under greenhouse conditions. Furthermore, under field conditions treatment with 200 mM trehalose for 9 h recorded 67.25% downy mildew disease protection, and reduced the disease severity to 32.75% when compared with untreated control which displayed 90% of disease severity. Trehalose did not affect either sporangial formation or zoospore release from sporangia, indicating that the reduction in disease incidence was not due to direct inhibition but rather through induction of resistance responses in the host. Additionally, trehalose was shown to enhance the levels of polyphenol oxidase, phenylalanine ammonia lyase, and peroxidase, which are known as markers of both biotic and abiotic stress responses. Our study shows that osmoregulators like trehalose could be used to protect plants against pathogen attacks by seed treatment, thus offering dual benefits of biotic and abiotic stress tolerance.

  10. Enhancement of downy mildew disease resistance in pearl millet by the G_app7 bioactive compound produced by Ganoderma applanatum.

    PubMed

    Jogaiah, Sudisha; Shetty, Hunthrike Shekar; Ito, Shin-Ichi; Tran, Lam-Son Phan

    2016-08-01

    Pearl millet (Pennisetum glaucum) stands sixth among the most important cereal crops grown in the semi-arid and arid regions of the world. The downy mildew disease caused by Sclerospora graminicola, an oomycete pathogen, has been recognized as a major biotic constraint in pearl millet production. On the other hand, basidiomycetes are known to produce a large number of antimicrobial metabolites, providing a good source of anti-oomycete agrochemicals. Here, we report the discovery and efficacy of a compound, named G_app7, purified from Ganoderma applanatum on inhibition of growth and development of S. graminicola, as well as the effects of seed treatment with G_app7 on protection of pearl millet from downy mildew. G_app7 consistently demonstrated remarkable effects against S. graminicola by recording significant inhibition of sporangium formation (41.4%), zoospore release (77.5%) and zoospore motility (91%). Analyses of G_app7 compound using two-dimensional nuclear magnetic resonance spectroscopy and liquid chromatography-mass spectrometry revealed its close resemblance to metominostrobin, a derivative of strobilurin group of fungicides. Furthermore, the G_app7 was shown to stably maintain the inhibitory effects at different temperatures between 25 and 80 °C. In addition, the anti-oomycete activity of G_app7 was fairly stable for a period of at least 12 months at 4 °C and was only completely lost after being autoclaved. Seed treatment with G_app7 resulted in a significant increase in disease protection (63%) under greenhouse conditions compared with water control. The identification and isolation of this novel and functional anti-oomycete compound from G. applanatum provide a considerable agrochemical importance for plant protection against downy mildew in an environmentally safe and economical manner.

  11. Phylogenetic Analysis of Downy Mildew Pathogens of Opium Poppy and PCR-Based In Planta and Seed Detection of Peronospora arborescens.

    PubMed

    Landa, Blanca B; Montes-Borrego, Miguel; Muñoz-Ledesma, Francisco J; Jiménez-Díaz, Rafael M

    2007-11-01

    ABSTRACT Severe downy mildew diseases of opium poppy (Papaver somniferum) can be caused by Peronospora arborescens and P. cristata, but differentiating between the two pathogens is difficult because they share morphological features and a similar host range. In Spain, where severe epidemics of downy mildew of opium poppy have occurred recently, the pathogen was identified as P. arborescens on the basis of morphological traits. In this current study, sequence homology and phylogenetic analyses of the internal transcribed spacer regions (ITS) of the ribosomal DNA (rDNA) were carried out with DNA from P. arborescens and P. cristata from diverse geographic origins, which suggested that only P. arborescens occurs in cultivated Papaver somniferum in Spain. Moreover, analyses of the rDNA ITS region from 27 samples of downy-mildew-affected tissues from all opium-poppy-growing regions in Spain showed that genetic diversity exists within P. arborescens populations in Spain and that these are phylogenetically distinct from P. cristata. P. cristata instead shares a more recent, common ancestor with a range of Peronospora species that includes those found on host plants that are not members of the Papaveraceae. Species-specific primers and a PCR assay protocol were developed that differentiated P. arborescens and P. cristata and proved useful for the detection of P. arborescens in symptomatic and asymptomatic opium poppy plant parts. Use of these primers demonstrated that P. arborescens can be transmitted in seeds and that commercial seed stocks collected from crops with high incidence of the disease were frequently infected. Field experiments conducted in microplots free from P. arborescens using seed stocks harvested from infected capsules further demonstrated that transmission from seedborne P. arborescens to opium poppy plants can occur. Therefore, the specific-PCR detection protocol developed in this study can be of use for epidemiological studies and diagnosing the

  12. Exogenous Trehalose Treatment Enhances the Activities of Defense-Related Enzymes and Triggers Resistance against Downy Mildew Disease of Pearl Millet

    PubMed Central

    Govind, Sharathchandra R.; Jogaiah, Sudisha; Abdelrahman, Mostafa; Shetty, Hunthrike S.; Tran, Lam-Son P.

    2016-01-01

    In recent years, diverse physiological functions of various sugars are the subject of investigations. Their roles in signal transduction in plant responses to adverse biotic and abiotic stress conditions have become apparent, and growing scientific evidence has indicated that disaccharides like sucrose and trehalose mediate plant defense responses in similar way as those induced by elicitors against the pathogens. Trehalose is a well-known metabolic osmoregulator, stress-protectant and non-reducing disaccharide existing in a variety of organisms, including fungi, bacteria, and plants. Commercially procured trehalose was applied to seeds of susceptible pearl millet (Pennisetum glaucum) cultivar “HB3,” and tested for its ability to reduce downy mildew disease incidence by induction of resistance. Seed treatment with trehalose at 200 mM for 9 h recorded 70.25% downy mildew disease protection, followed by those with 100 and 50 mM trehalose which offered 64.35 and 52.55% defense, respectively, under greenhouse conditions. Furthermore, under field conditions treatment with 200 mM trehalose for 9 h recorded 67.25% downy mildew disease protection, and reduced the disease severity to 32.75% when compared with untreated control which displayed 90% of disease severity. Trehalose did not affect either sporangial formation or zoospore release from sporangia, indicating that the reduction in disease incidence was not due to direct inhibition but rather through induction of resistance responses in the host. Additionally, trehalose was shown to enhance the levels of polyphenol oxidase, phenylalanine ammonia lyase, and peroxidase, which are known as markers of both biotic and abiotic stress responses. Our study shows that osmoregulators like trehalose could be used to protect plants against pathogen attacks by seed treatment, thus offering dual benefits of biotic and abiotic stress tolerance. PMID:27895647

  13. Mutations in MCT8 in patients with Allan-Herndon-Dudley-syndrome affecting its cellular distribution.

    PubMed

    Kersseboom, Simone; Kremers, Gert-Jan; Friesema, Edith C H; Visser, W Edward; Klootwijk, Wim; Peeters, Robin P; Visser, Theo J

    2013-05-01

    Monocarboxylate transporter 8 (MCT8) is a thyroid hormone (TH)-specific transporter. Mutations in the MCT8 gene are associated with Allan-Herndon-Dudley Syndrome (AHDS), consisting of severe psychomotor retardation and disturbed TH parameters. To study the functional consequences of different MCT8 mutations in detail, we combined functional analysis in different cell types with live-cell imaging of the cellular distribution of seven mutations that we identified in patients with AHDS. We used two cell models to study the mutations in vitro: 1) transiently transfected COS1 and JEG3 cells, and 2) stably transfected Flp-in 293 cells expressing a MCT8-cyan fluorescent protein construct. All seven mutants were expressed at the protein level and showed a defect in T3 and T4 transport in uptake and metabolism studies. Three mutants (G282C, P537L, and G558D) had residual uptake activity in Flp-in 293 and COS1 cells, but not in JEG3 cells. Four mutants (G221R, P321L, D453V, P537L) were expressed at the plasma membrane. The mobility in the plasma membrane of P537L was similar to WT, but the mobility of P321L was altered. The other mutants studied (insV236, G282C, G558D) were predominantly localized in the endoplasmic reticulum. In essence, loss of function by MCT8 mutations can be divided in two groups: mutations that result in partial or complete loss of transport activity (G221R, P321L, D453V, P537L) and mutations that mainly disturb protein expression and trafficking (insV236, G282C, G558D). The cell type-dependent results suggest that MCT8 mutations in AHDS patients may have tissue-specific effects on TH transport probably caused by tissue-specific expression of yet unknown MCT8-interacting proteins.

  14. Carbonates in fractures of Martian meteorite Allan Hills 84001: petrologic evidence for impact origin

    NASA Technical Reports Server (NTRS)

    Scott, E. R.; Krot, A. N.; Yamaguchi, A.

    1998-01-01

    Carbonates in Martian meteorite Allan Hills 84001 occur as grains on pyroxene grain boundaries, in crushed zones, and as disks, veins, and irregularly shaped grains in healed pyroxene fractures. Some carbonate disks have tapered Mg-rich edges and are accompanied by smaller, thinner and relatively homogeneous, magnesite microdisks. Except for the microdisks, all types of carbonate grains show the same unique chemical zoning pattern on MgCO3-FeCO3-CaCO3 plots. This chemical characteristic and the close spatial association of diverse carbonate types show that all carbonates formed by a similar process. The heterogeneous distribution of carbonates in fractures, tapered shapes of some disks, and the localized occurrence of Mg-rich microdisks appear to be incompatible with growth from an externally derived CO2-rich fluid that changed in composition over time. These features suggest instead that the fractures were closed as carbonates grew from an internally derived fluid and that the microdisks formed from a residual Mg-rich fluid that was squeezed along fractures. Carbonate in pyroxene fractures is most abundant near grains of plagioclase glass that are located on pyroxene grain boundaries and commonly contain major or minor amounts of carbonate. We infer that carbonates in fractures formed from grain boundary carbonates associated with plagiociase that were melted by impact and dispersed into the surrounding fractured pyroxene. Carbonates in fractures, which include those studied by McKay et al. (1996), could not have formed at low temperatures and preserved mineralogical evidence for Martian organisms.

  15. Carbonates in fractures of Martian meteorite Allan Hills 84001: petrologic evidence for impact origin

    NASA Technical Reports Server (NTRS)

    Scott, E. R.; Krot, A. N.; Yamaguchi, A.

    1998-01-01

    Carbonates in Martian meteorite Allan Hills 84001 occur as grains on pyroxene grain boundaries, in crushed zones, and as disks, veins, and irregularly shaped grains in healed pyroxene fractures. Some carbonate disks have tapered Mg-rich edges and are accompanied by smaller, thinner and relatively homogeneous, magnesite microdisks. Except for the microdisks, all types of carbonate grains show the same unique chemical zoning pattern on MgCO3-FeCO3-CaCO3 plots. This chemical characteristic and the close spatial association of diverse carbonate types show that all carbonates formed by a similar process. The heterogeneous distribution of carbonates in fractures, tapered shapes of some disks, and the localized occurrence of Mg-rich microdisks appear to be incompatible with growth from an externally derived CO2-rich fluid that changed in composition over time. These features suggest instead that the fractures were closed as carbonates grew from an internally derived fluid and that the microdisks formed from a residual Mg-rich fluid that was squeezed along fractures. Carbonate in pyroxene fractures is most abundant near grains of plagioclase glass that are located on pyroxene grain boundaries and commonly contain major or minor amounts of carbonate. We infer that carbonates in fractures formed from grain boundary carbonates associated with plagiociase that were melted by impact and dispersed into the surrounding fractured pyroxene. Carbonates in fractures, which include those studied by McKay et al. (1996), could not have formed at low temperatures and preserved mineralogical evidence for Martian organisms.

  16. COORDINATED ANALYSES OF PRESOLAR GRAINS IN THE ALLAN HILLS 77307 AND QUEEN ELIZABETH RANGE 99177 METEORITES

    SciTech Connect

    Nguyen, Ann N.; Nittler, Larry R.; Alexander, Conel M. O'D.; Stadermann, Frank J.; Stroud, Rhonda M.

    2010-08-10

    We report the identification of presolar silicates ({approx}177 ppm), presolar oxides ({approx}11 ppm), and one presolar SiO{sub 2} grain in the Allan Hills (ALHA) 77307 chondrite. Three grains having Si-isotopic compositions similar to SiC X and Z grains were also identified, though the mineral phases are unconfirmed. Similar abundances of presolar silicates ({approx}152 ppm) and oxides ({approx}8 ppm) were also uncovered in the primitive CR chondrite Queen Elizabeth Range (QUE) 99177, along with 13 presolar SiC grains and one presolar silicon nitride. The O-isotopic compositions of the presolar silicates and oxides indicate that most of the grains condensed in low-mass red giant and asymptotic giant branch stars. Interestingly, unlike presolar oxides, few presolar silicate grains have isotopic compositions pointing to low-metallicity, low-mass stars (Group 3). The {sup 18}O-rich (Group 4) silicates, along with the few Group 3 silicates that were identified, likely have origins in supernova outflows. This is supported by their O- and Si-isotopic compositions. Elemental compositions for 74 presolar silicate grains were determined by scanning Auger spectroscopy. Most of the grains have non-stoichiometric elemental compositions inconsistent with pyroxene or olivine, the phases commonly used to fit astronomical spectra, and have comparable Mg and Fe contents. Non-equilibrium condensation and/or secondary alteration could produce the high Fe contents. Transmission electron microscopic analysis of three silicate grains also reveals non-stoichiometric compositions, attributable to non-equilibrium or multistep condensation, and very fine scale elemental heterogeneity, possibly due to subsequent annealing. The mineralogies of presolar silicates identified in meteorites thus far seem to differ from those in interplanetary dust particles.

  17. Using Allan variance to evaluate the relative accuracy on different time scales of GNSS/INS systems

    NASA Astrophysics Data System (ADS)

    Zhang, Quan; Niu, Xiaoji; Chen, Qijin; Zhang, Hongping; Shi, Chuang

    2013-08-01

    The integration of the Global Navigation Satellite System (GNSS) with an inertial navigation system (INS) can provide accurate and reliable navigation information using a data fusing algorithm such as a Kalman filter. There has been much interest in the absolute accuracy with dominant components of mid-term and long-term errors in current research works related to the GNSS/INS navigation systems, whereas few research works focus on the relative accuracy on different time scales. However, new applications of GNSS/INS integration, such as position and orientation system for mobile mapping systems and the GNSS/INS deeply-coupled receiver, require the relative accuracy on different time scales, especially that of the short-term accuracy. This paper raises the importance of the short-term accuracy of the GNSS/INS systems in certain applications. Current methods to evaluate the navigation accuracy are mainly to provide some statistical values that can represent the overall error level (e.g., RMS), but cannot show the relative accuracy. Allan variance is a method of representing root mean square (RMS) random drift error as a function of average time. An Allan variance analysis method is proposed in this paper to evaluate the relative accuracy on different time scales of GNSS/INS systems. The feasibility of the idea was verified by the road test results of different grades of GNSS/INS systems. The results show that Allan variance can give the levels of the navigation accuracy of the GNSS/INS systems on different time scales in an effective way, especially for the short-term accuracy.

  18. Bulk and Stable Isotopic Compositions of Carbonate Minerals in Martian Meteorite Allan Hills 84001: No Proof of High Formation Temperature

    NASA Technical Reports Server (NTRS)

    Treiman, Allan H.; Romanek, Christopher S.

    1998-01-01

    Understanding the origin of carbonate minerals in the Martian meteorite Allan Hills (ALH) 84001 is crucial to evaluating the hypothesis that they contain traces of ancient Martian life. Using arguments based on chemical equilibria among carbonates and fluids, an origin at greater than 650 C (inimical to life) has been proposed. However, the bulk and stable isotopic compositions of the carbonate minerals are open to multiple interpretations and so lend no particular support to a high-temperature origin. Other methods (possibly less direct) will have to be used to determine the formation temperature of the carbonates in ALH 84001.

  19. The periodogram and Allan variance reveal fractal exponents greater than unity in auditory-nerve spike trains.

    PubMed

    Lowen, S B; Teich, M C

    1996-06-01

    Auditory-nerve spike trains exhibit fractal behavior, and therefore traditional renewal-point-process models fail to describe them adequately. Previous measures of the fractal exponent of these spike trains are based on the Fano factor and consequently cannot exceed unity. Two estimates of the fractal exponent are considered which do not suffer from this limit: one derived from the Allan variance, which was developed by the authors, and one based on the periodogram. These measures indicate that fractal exponents do indeed exceed unity for some nerve-spike recordings from stimulated primary afferent cat auditory-nerve fibers.

  20. A Downy Mildew Effector Attenuates Salicylic Acid–Triggered Immunity in Arabidopsis by Interacting with the Host Mediator Complex

    PubMed Central

    Caillaud, Marie-Cécile; Asai, Shuta; Rallapalli, Ghanasyam; Piquerez, Sophie; Fabro, Georgina; Jones, Jonathan D. G.

    2013-01-01

    Plants are continually exposed to pathogen attack but usually remain healthy because they can activate defences upon perception of microbes. However, pathogens have evolved to overcome plant immunity by delivering effectors into the plant cell to attenuate defence, resulting in disease. Recent studies suggest that some effectors may manipulate host transcription, but the specific mechanisms by which such effectors promote susceptibility remain unclear. We study the oomycete downy mildew pathogen of Arabidopsis, Hyaloperonospora arabidopsidis (Hpa), and show here that the nuclear-localized effector HaRxL44 interacts with Mediator subunit 19a (MED19a), resulting in the degradation of MED19a in a proteasome-dependent manner. The Mediator complex of ∼25 proteins is broadly conserved in eukaryotes and mediates the interaction between transcriptional regulators and RNA polymerase II. We found MED19a to be a positive regulator of immunity against Hpa. Expression profiling experiments reveal transcriptional changes resembling jasmonic acid/ethylene (JA/ET) signalling in the presence of HaRxL44, and also 3 d after infection with Hpa. Elevated JA/ET signalling is associated with a decrease in salicylic acid (SA)–triggered immunity (SATI) in Arabidopsis plants expressing HaRxL44 and in med19a loss-of-function mutants, whereas SATI is elevated in plants overexpressing MED19a. Using a PR1::GUS reporter, we discovered that Hpa suppresses PR1 expression specifically in cells containing haustoria, into which RxLR effectors are delivered, but not in nonhaustoriated adjacent cells, which show high PR1::GUS expression levels. Thus, HaRxL44 interferes with Mediator function by degrading MED19, shifting the balance of defence transcription from SA-responsive defence to JA/ET-signalling, and enhancing susceptibility to biotrophs by attenuating SA-dependent gene expression. PMID:24339748

  1. A transgenic mutant of Lactuca sativa (lettuce) with a T-DNA tightly linked to loss of downy mildew resistance.

    PubMed

    Okubara, P A; Arroyo-Garcia, R; Shen, K A; Mazier, M; Meyers, B C; Ochoa, O E; Kim, S; Yang, C H; Michelmore, R W

    1997-11-01

    One hundred and ninety-two independent primary transformants of lettuce cv. Diana were obtained by co-cultivation with Agrobacterium tumefaciens carrying constructs containing maize Ac transposase and Ds. R2 families were screened for mutations at four genes (Dm) for resistance to downy mildew. One family, designated dm3t524, had lost resistance to an isolate of Bremia lactucae expressing the avirulence gene Avr3. Loss of resistance segregated as a single recessive allele of Dm3. The mutation was not due to a large deletion as all molecular markers flanking Dm3 were present. Loss of Dm3 activity co-segregated with a T-DNA from which Ds had excised. Genomic DNA flanking the right border of this T-DNA was isolated by inverse polymerase chain reaction. This genomic sequence was present in four to five copies in wild-type cv. Diana. One copy was missing in all eight deletion mutants of Dm3 and altered in dm3t524, indicating tight physical linkage to Dm3. Three open reading frames (ORFs) occurred in a 6.6-kb region flanking the insertion site; however, expression of these ORFs was not detected. No similarities were detected between these ORFs and resistance genes cloned from other species. Transgenic complementation with 11-to 27-kb genomic fragments of Diana spanning the insertion site failed to restore Dm3 function to two ethyl methanesulfonate (EMS)-induced mutants of Dm3 or to cv. Cobham Green, which naturally lacks Dm3 activity. Therefore, either the T-DNA inserted extremely close to, but not within, Dm3 and the mutation may have been caused by secondary movement of Ds, or Dm3 activity is encoded by a gene extending beyond the fragments used for complementation.

  2. OH reactivity and concentrations of biogenic volatile organic compounds in a Mediterranean forest of downy oak trees

    NASA Astrophysics Data System (ADS)

    Zannoni, N.; Gros, V.; Lanza, M.; Sarda, R.; Bonsang, B.; Kalogridis, C.; Preunkert, S.; Legrand, M.; Jambert, C.; Boissard, C.; Lathiere, J.

    2016-02-01

    Total OH reactivity, defined as the total loss frequency of the hydroxyl radical in the atmosphere, has proved to be an excellent tool to identify the total loading of reactive species in ambient air. High levels of unknown reactivity were found in several forests worldwide and were often higher than at urban sites.Our study presents atmospheric mixing ratios of biogenic compounds and total OH reactivity measured during late spring 2014 at the forest of downy oak trees of the Observatoire de Haute Provence (OHP), France. Air masses were sampled at two heights: 2 m, i.e., inside the canopy, and 10 m, i.e., above the canopy, where the mean canopy height is 5 m.We found that the OH reactivity at the site mainly depended on the main primary biogenic species emitted by the forest, which was isoprene and to a lesser extent by its degradation products and long-lived atmospheric compounds (up to 26 % during daytime). During daytime, no significant missing OH reactivity was reported at the site, either inside or above the canopy. However, during two nights we determined a missing fraction of OH reactivity up to 50 %, possibly due to unmeasured oxidation products. We confirmed that no significant oxidation of the primary species occurred within the canopy; primary compounds emitted by the forest were fast transported to the atmosphere. Finally, the OH reactivity at this site was maximum 69 s-1, which is a high value for a forest characterized by a temperate climate. Observations in various and diverse forests in the Mediterranean region are therefore needed to better constrain the impact of reactive gases over this area.

  3. Expression Profiling during Arabidopsis/Downy Mildew Interaction Reveals a Highly-Expressed Effector That Attenuates Responses to Salicylic Acid

    PubMed Central

    Asai, Shuta; Caillaud, Marie-Cécile; Furzer, Oliver J.; Ishaque, Naveed; Wirthmueller, Lennart; Fabro, Georgina; Shirasu, Ken; Jones, Jonathan D. G.

    2014-01-01

    Plants have evolved strong innate immunity mechanisms, but successful pathogens evade or suppress plant immunity via effectors delivered into the plant cell. Hyaloperonospora arabidopsidis (Hpa) causes downy mildew on Arabidopsis thaliana, and a genome sequence is available for isolate Emoy2. Here, we exploit the availability of genome sequences for Hpa and Arabidopsis to measure gene-expression changes in both Hpa and Arabidopsis simultaneously during infection. Using a high-throughput cDNA tag sequencing method, we reveal expression patterns of Hpa predicted effectors and Arabidopsis genes in compatible and incompatible interactions, and promoter elements associated with Hpa genes expressed during infection. By resequencing Hpa isolate Waco9, we found it evades Arabidopsis resistance gene RPP1 through deletion of the cognate recognized effector ATR1. Arabidopsis salicylic acid (SA)-responsive genes including PR1 were activated not only at early time points in the incompatible interaction but also at late time points in the compatible interaction. By histochemical analysis, we found that Hpa suppresses SA-inducible PR1 expression, specifically in the haustoriated cells into which host-translocated effectors are delivered, but not in non-haustoriated adjacent cells. Finally, we found a highly-expressed Hpa effector candidate that suppresses responsiveness to SA. As this approach can be easily applied to host-pathogen interactions for which both host and pathogen genome sequences are available, this work opens the door towards transcriptome studies in infection biology that should help unravel pathogen infection strategies and the mechanisms by which host defense responses are overcome. PMID:25329884

  4. Groundwater Pollution Source Identification using Linked ANN-Optimization Model

    NASA Astrophysics Data System (ADS)

    Ayaz, Md; Srivastava, Rajesh; Jain, Ashu

    2014-05-01

    Groundwater is the principal source of drinking water in several parts of the world. Contamination of groundwater has become a serious health and environmental problem today. Human activities including industrial and agricultural activities are generally responsible for this contamination. Identification of groundwater pollution source is a major step in groundwater pollution remediation. Complete knowledge of pollution source in terms of its source characteristics is essential to adopt an effective remediation strategy. Groundwater pollution source is said to be identified completely when the source characteristics - location, strength and release period - are known. Identification of unknown groundwater pollution source is an ill-posed inverse problem. It becomes more difficult for real field conditions, when the lag time between the first reading at observation well and the time at which the source becomes active is not known. We developed a linked ANN-Optimization model for complete identification of an unknown groundwater pollution source. The model comprises two parts- an optimization model and an ANN model. Decision variables of linked ANN-Optimization model contain source location and release period of pollution source. An objective function is formulated using the spatial and temporal data of observed and simulated concentrations, and then minimized to identify the pollution source parameters. In the formulation of the objective function, we require the lag time which is not known. An ANN model with one hidden layer is trained using Levenberg-Marquardt algorithm to find the lag time. Different combinations of source locations and release periods are used as inputs and lag time is obtained as the output. Performance of the proposed model is evaluated for two and three dimensional case with error-free and erroneous data. Erroneous data was generated by adding uniformly distributed random error (error level 0-10%) to the analytically computed concentration

  5. Specific in planta recognition of two GKLR proteins of the downy mildew Bremia lactucae revealed in a large effector screen in lettuce.

    PubMed

    Stassen, Joost H M; den Boer, Erik; Vergeer, Pim W J; Andel, Annemiek; Ellendorff, Ursula; Pelgrom, Koen; Pel, Mathieu; Schut, Johan; Zonneveld, Olaf; Jeuken, Marieke J W; Van den Ackerveken, Guido

    2013-11-01

    Breeding lettuce (Lactuca sativa) for resistance to the downy mildew pathogen Bremia lactucae is mainly achieved by introgression of dominant downy mildew resistance (Dm) genes. New Bremia races quickly render Dm genes ineffective, possibly by mutation of recognized host-translocated effectors or by suppression of effector-triggered immunity. We have previously identified 34 potential RXLR(-like) effector proteins of B. lactucae that were here tested for specific recognition within a collection of 129 B. lactucae-resistant Lactuca lines. Two effectors triggered a hypersensitive response: BLG01 in 52 lines, predominantly L. saligna, and BLG03 in two L. sativa lines containing Dm2 resistance. The N-terminal sequences of BLG01 and BLG03, containing the signal peptide and GKLR variant of the RXLR translocation motif, are not required for in planta recognition but function in effector delivery. The locus responsible for BLG01 recognition maps to the bottom of lettuce chromosome 9, whereas recognition of BLG03 maps in the RGC2 cluster on chromosome 2. Lactuca lines that recognize the BLG effectors are not resistant to Bremia isolate Bl:24 that expresses both BLG genes, suggesting that Bl:24 can suppress the triggered immune responses. In contrast, lettuce segregants displaying Dm2-mediated resistance to Bremia isolate Bl:5 are responsive to BLG03, suggesting that BLG03 is a candidate Avr2 protein.

  6. RXLR and CRN Effectors from the Sunflower Downy Mildew Pathogen Plasmopara halstedii Induce Hypersensitive-Like Responses in Resistant Sunflower Lines

    PubMed Central

    Gascuel, Quentin; Buendia, Luis; Pecrix, Yann; Blanchet, Nicolas; Muños, Stéphane; Vear, Felicity; Godiard, Laurence

    2016-01-01

    Plasmopara halstedii is an obligate biotrophic oomycete causing downy mildew disease on sunflower, Helianthus annuus, an economically important oil crop. Severe symptoms of the disease (e.g., plant dwarfism, leaf bleaching, sporulation and production of infertile flower) strongly impair seed yield. Pl resistance genes conferring resistance to specific P. halstedii pathotypes were located on sunflower genetic map but yet not cloned. They are present in cultivated lines to protect them against downy mildew disease. Among the 16 different P. halstedii pathotypes recorded in France, pathotype 710 is frequently found, and therefore continuously controlled in sunflower by different Pl genes. High-throughput sequencing of cDNA from P. halstedii led us to identify potential effectors with the characteristic RXLR or CRN motifs described in other oomycetes. Expression of six P. halstedii putative effectors, five RXLR and one CRN, was analyzed by qRT-PCR in pathogen spores and in the pathogen infecting sunflower leaves and selected for functional analyses. We developed a new method for transient expression in sunflower plant leaves and showed for the first time subcellular localization of P. halstedii effectors fused to a fluorescent protein in sunflower leaf cells. Overexpression of the CRN and of 3 RXLR effectors induced hypersensitive-like cell death reactions in some sunflower near-isogenic lines resistant to pathotype 710 and not in susceptible corresponding lines, suggesting they could be involved in Pl loci-mediated resistances. PMID:28066456

  7. An ethoxylated surfactant enhances the penetration of the sulfated laminarin through leaf cuticle and stomata, leading to increased induced resistance against grapevine downy mildew.

    PubMed

    Paris, Franck; Krzyżaniak, Yuko; Gauvrit, Christian; Jamois, Frank; Domergue, Frédéric; Joubès, Jérôme; Ferrières, Vincent; Adrian, Marielle; Legentil, Laurent; Daire, Xavier; Trouvelot, Sophie

    2016-03-01

    Some β-1,3-glucans and particularly sulfated laminarin (PS3) are known as resistance inducers (RIs) in grapevine against the downy mildew. However, their efficacy in vineyard is still often too low, which might be caused by a limited penetration through the leaf cuticle following spray application. We used (14) C-sucrose uptake experiments with grapevine leaves in order to select a surfactant as saccharide penetration enhancer. Our results showed that although sucrose foliar uptake was low, it was strongly enhanced by Dehscofix CO125 (DE), a highly ethoxylated surfactant. Fluorescent saccharides were then produced and laser scanning microscopy was used to analyze their foliar diffusion pattern in Arabidopsis thaliana and grapevine. Interestingly, sucrose and PS3 were seemingly able to penetrate the leaf cuticle only when formulated with DE. Diffusion could preferentially occur via stomata, anticlinal cell walls and trichomes. In grapevine, PS3 penetration rate was much higher on the stomateous abaxial surface of the leaf than on the adaxial surface. Finally, using DE allowed a higher level of downy mildew control by PS3, which corroborated diffusion observations. Our results have practical consequences for the improvement of treatments with saccharidic inducers on grape. That is, formulation of such RIs plays a critical role for their cuticular diffusion and consequently their efficacy. Also, spray application should preferentially target the abaxial surface of the leaves in order to maximize their penetration. © 2015 Scandinavian Plant Physiology Society.

  8. Over-Expression of VvWRKY1 in Grapevines Induces Expression of Jasmonic Acid Pathway-Related Genes and Confers Higher Tolerance to the Downy Mildew

    PubMed Central

    Marchive, Chloé; Léon, Céline; Kappel, Christian; Coutos-Thévenot, Pierre; Corio-Costet, Marie-France; Delrot, Serge; Lauvergeat, Virginie

    2013-01-01

    Most WRKY transcription factors activate expression of defence genes in a salicylic acid- and/or jasmonic acid-dependent signalling pathway. We previously identified a WRKY gene, VvWRKY1, which is able to enhance tolerance to fungal pathogens when it is overexpressed in tobacco. The present work analyzes the effects of VvWRKY1 overexpression in grapevine. Microarray analysis showed that genes encoding defence-related proteins were up-regulated in the leaves of transgenic 35S::VvWRKY1 grapevines. Quantitative RT-PCR analysis confirmed that three genes putatively involved in jasmonic acid signalling pathway were overexpressed in the transgenic grapes. The ability of VvWRKY1 to trans-activate the promoters of these genes was demonstrated by transient expression in grape protoplasts. The resistance to the causal agent of downy mildew, Plasmopara viticola, was enhanced in the transgenic plants. These results show that VvWRKY1 can increase resistance of grapevine against the downy mildew through transcriptional reprogramming leading to activation of the jasmonic acid signalling pathway. PMID:23342101

  9. Exploration and development of the climate archive of the Allan Hills Blue Ice Area, Antarctica

    NASA Astrophysics Data System (ADS)

    Spaulding, Nicole E.

    The ice flow, stable water isotopic composition, and glaciochemistry of ice within the Allan Hills Blue Ice Area (AH BIA), Antarctica, is investigated to determine its potential for contributing to and extending the currently available 800 ka ice core record of paleoclimate. The investigation began with a study of ice dynamics within the AH BIA. The horizontal (u ) and vertical (z) ice velocities, determined using high-precision GPS measurements, are 1.5 to 50 (+0.12) cm a--1 and 2-3 (+/-0.50) cm a--1, respectively. The significant positive z and low u verify that old ice is present at the surface. Surface topography, in combination with u, was used to delineate a flowline (A-B) along which ice of continuous age was collected for the next stage of the investigation. Surface ice was recovered along 5 km of A-B and a 225 meter core was drilled at its midpoint. Ice samples were analyzed for stable isotopes of water (deltaD, delta 18O), which are common proxies for temperature. The resulting profiles exhibit variability consistent with the magnitude of glacial-interglacial transitions in East Antarctica. These variations, in combination with 40Aratm, and delta18O atm constrain the age of sampled ice to 90-250 ka. However, the 100 meters of directly above bedrock was not collected and the bottom depth is calculated to be at least 400 ka. The final phase of the investigation involved determining the concentrations of terrestrial and marine chemical species in ice from multiple points along A-B. Concentrations ranged from pg L--1 level for rare earth elements to microg L --1 level for multi-sourced compounds like sulfate. The concentrations of all analytes were anti-correlated with stable water isotope values indicating they had preserved a record of changes in atmospheric circulation, source strength, and continental aridity. The composition of rare earth elements points to Australia as an important interglacial dust source, while molar ratios of major ions, particularly

  10. An adaptive calibration circuit for level measurement using optimized ANN

    NASA Astrophysics Data System (ADS)

    Santhosh, V. K.; Roy, B. K.

    2013-01-01

    Design of an intelligent level measurement technique by Capacitance Level Sensor (CLS) using an Optimized Artificial Neural Network (OANN) is discussed in this paper. The objectives of the present work are (i) to extend the linearity range of measurement to 100% of the full scale, (ii) to make the measurement technique adaptive of variation in permittivity of liquid, liquid temperature, and to achieve objectives (i) and (ii) using an optimized neural network. An optimized ANN is considered by comparing various algorithms, transfer functions of neuron, and number of hidden layers based on minimum mean square error (MSE). The output of CLS is capacitance. A data conversion unit is used to convert it to voltage. A suitable optimized ANN is added, in place of conventional calibration circuit, in cascade to data conversion unit. The proposed technique provides linear relationship of the overall system over the full input range and makes it adaptive of variation in liquid permittivity and/or temperature. When an unknown level is tested with an arbitrary liquid permittivity, and temperature, the proposed technique has measured the level correctly. Results show that the proposed scheme has fulfilled the objectives.

  11. Determination of closed form solution for acceptance sampling using ANN.

    PubMed

    Vasudevan, D; Selladurai, V; Nagaraj, P

    2004-01-01

    Tabled sampling schemes such as MIL-STD-105D offer limited flexibility to quality control engineers in designing sampling plans to meet specific needs. We describe a closed form solution to determine the AQL indexed single sampling plan using an artificial neural network (ANN). To determine the sample size and the acceptance number, feed-forward neural networks with sigmoid neural function are trained by a back propagation algorithm for normal, tightened, and reduced inspections. From these trained ANNs, the relevant weight and bias values are obtained. The closed form solutions to determine the sampling plans are obtained using these values. Numerical examples are provided for using these closed form solutions to determine sampling plans for normal, tightened, and reduced inspections. The proposed method does not involve table look-ups or complex calculations. Sampling plan can be determined by using this method, for any required acceptable quality level and lot size. Suggestions are provided to duplicate this idea for applying to other standard sampling table schemes.

  12. Gasification characteristics of MSW and an ANN prediction model.

    PubMed

    Xiao, Gang; Ni, Ming-jiang; Chi, Yong; Jin, Bao-sheng; Xiao, Rui; Zhong, Zhao-ping; Huang, Ya-ji

    2009-01-01

    Gasification characteristics make up the important parts of municipal solid waste (MSW) gasification and melting technology. These characteristics are closely related to the composition of MSW, which alters with climates and seasons. It is important to find a practical way to predict gasification characteristics. In this paper, five typical kinds of organic components (wood, paper, kitchen garbage, plastic, and textile) and three representative types of simulated MSW are gasified in a fluidized-bed at 400-800 degrees C with the equivalence ratio (ER) in the range of 0.2-0.6. The lower heating value (LHV) of gas, gasification products, and gas yield are reported. The results indicate that gasification characteristics are different from sample to sample. Based on the experimental data, an artificial neural networks (ANN) model is developed to predict gasification characteristics. The training and validating relative errors are within +/-15% and +/-20%, respectively, and predicting relative errors of an industrial sample are below +/-25%. This indicates that it is acceptable to predict gasification characteristics via ANN model.

  13. ANN expert system screening for illicit amphetamines using molecular descriptors

    NASA Astrophysics Data System (ADS)

    Gosav, S.; Praisler, M.; Dorohoi, D. O.

    2007-05-01

    The goal of this study was to develop and an artificial neural network (ANN) based on computed descriptors, which would be able to classify the molecular structures of potential illicit amphetamines and to derive their biological activity according to the similarity of their molecular structure with amphetamines of known toxicity. The system is necessary for testing new molecular structures for epidemiological, clinical, and forensic purposes. It was built using a database formed by 146 compounds representing drugs of abuse (mainly central stimulants, hallucinogens, sympathomimetic amines, narcotics and other potent analgesics), precursors, or derivatized counterparts. Their molecular structures were characterized by computing three types of descriptors: 38 constitutional descriptors (CDs), 69 topological descriptors (TDs) and 160 3D-MoRSE descriptors (3DDs). An ANN system was built for each category of variables. All three networks (CD-NN, TD-NN and 3DD-NN) were trained to distinguish between stimulant amphetamines, hallucinogenic amphetamines, and nonamphetamines. A selection of variables was performed when necessary. The efficiency with which each network identifies the class identity of an unknown sample was evaluated by calculating several figures of merit. The results of the comparative analysis are presented.

  14. A new approach to the extraction of ANN rules and to their generalization capacity through GP.

    PubMed

    Rabuñal, Juan R; Dorado, Julián; Pazos, Alejandro; Pereira, Javier; Rivero, Daniel

    2004-07-01

    Various techniques for the extraction of ANN rules have been used, but most of them have focused on certain types of networks and their training. There are very few methods that deal with ANN rule extraction as systems that are independent of their architecture, training, and internal distribution of weights, connections, and activation functions. This article proposes a methodology for the extraction of ANN rules, regardless of their architecture, and based on genetic programming. The strategy is based on the previous algorithm and aims at achieving the generalization capacity that is characteristic of ANNs by means of symbolic rules that are understandable to human beings.

  15. Utilizing "The William Allan Kritsonis Balanced Teeter-Totter Model" as a Means to Cultivate a Legacy of Transformational Leaders in Schools: A National Focus

    ERIC Educational Resources Information Center

    Jacobs, Karen Dupre

    2007-01-01

    The Kritsonis Teeter-Totter Model, developed by Dr. William Allan Kritsonis, is utilized to cultivate a legacy of transformational leaders in schools throughout the United States. In a time when change in schools is inevitable, the model aides school leaders in better defining their individual role in schools and that of their stakeholders in…

  16. Detection of Verticillium wilt of olive trees and downy mildew of opium poppy using hyperspectral and thermal UAV imagery

    NASA Astrophysics Data System (ADS)

    Calderón Madrid, Rocío; Navas Cortés, Juan Antonio; Montes Borrego, Miguel; Landa del Castillo, Blanca Beatriz; Lucena León, Carlos; Jesús Zarco Tejada, Pablo

    2014-05-01

    The present study explored the use of high-resolution thermal, multispectral and hyperspectral imagery as indicators of the infections caused by Verticillium wilt (VW) in olive trees and downy mildew (DM) in opium poppy fields. VW, caused by the soil-borne fungus Verticillium dahliae, and DM, caused by the biotrophic obligate oomycete Peronospora arborescens, are the most economically limiting diseases of olive trees and opium poppy, respectively, worldwide. V. dahliae infects the plant by the roots and colonizes its vascular system, blocking water flow and eventually inducing water stress. P. arborescens colonizes the mesophyll, appearing the first symptoms as small chlorotic leaf lesions, which can evolve to curled and thickened tissues and systemic infections that become deformed and necrotic as the disease develops. The work conducted to detect VW and DM infection consisted on the acquisition of time series of airborne thermal, multispectral and hyperspectral imagery using 2-m and 5-m wingspan electric Unmanned Aerial Vehicles (UAVs) in spring and summer of three consecutive years (2009 to 2011) for VW detection and on three dates in spring of 2009 for DM detection. Two 7-ha commercial olive orchards naturally infected with V. dahliae and two opium poppy field plots artificially infected by P. arborescens were flown. Concurrently to the airborne campaigns, olive orchards and opium poppy fields were assessed "in situ" to assess actual VW severity and DM incidence. Furthermore, field measurements were conducted at leaf and crown level. The field results related to VW detection showed a significant increase in crown temperature (Tc) minus air temperature (Ta) and a decrease in leaf stomatal conductance (G) as VW severity increased. This reduction in G was associated with a significant increase in the Photochemical Reflectance Index (PRI570) and a decrease in chlorophyll fluorescence. DM asymptomatic leaves showed significantly higher NDVI and lower green/red index

  17. Whole genome wide expression profiles of Vitis amurensis grape responding to downy mildew by using Solexa sequencing technology

    PubMed Central

    2010-01-01

    Background Downy mildew (DM), caused by pathogen Plasmopara viticola (PV) is the single most damaging disease of grapes (Vitis L.) worldwide. However, the mechanisms of the disease development in grapes are poorly understood. A method for estimating gene expression levels using Solexa sequencing of Type I restriction-endonuclease-generated cDNA fragments was used for deep sequencing the transcriptomes resulting from PV infected leaves of Vitis amurensis Rupr. cv. Zuoshan-1. Our goal is to identify genes that are involved in resistance to grape DM disease. Results Approximately 8.5 million (M) 21-nt cDNA tags were sequenced in the cDNA library derived from PV pathogen-infected leaves, and about 7.5 M were sequenced from the cDNA library constructed from the control leaves. When annotated, a total of 15,249 putative genes were identified from the Solexa sequencing tags for the infection (INF) library and 14,549 for the control (CON) library. Comparative analysis between these two cDNA libraries showed about 0.9% of the unique tags increased by at least five-fold, and about 0.6% of the unique tags decreased more than five-fold in infected leaves, while 98.5% of the unique tags showed less than five-fold difference between the two samples. The expression levels of 12 differentially expressed genes were confirmed by Real-time RT-PCR and the trends observed agreed well with the Solexa expression profiles, although the degree of change was lower in amplitude. After pathway enrichment analysis, a set of significantly enriched pathways were identified for the differentially expressed genes (DEGs), which associated with ribosome structure, photosynthesis, amino acid and sugar metabolism. Conclusions This study presented a series of candidate genes and pathways that may contribute to DM resistance in grapes, and illustrated that the Solexa-based tag-sequencing approach was a powerful tool for gene expression comparison between control and treated samples. PMID:21029438

  18. OH reactivity and concentrations of Biogenic Volatile Organic Compounds in a Mediterranean forest of downy oak trees

    NASA Astrophysics Data System (ADS)

    Zannoni, N.; Gros, V.; Lanza, M.; Sarda, R.; Bonsang, B.; Kalogridis, C.; Preunkert, S.; Legrand, M.; Jambert, C.; Boissard, C.; Lathiere, J.

    2015-08-01

    Understanding the processes between the biosphere and the atmosphere is challenged by the difficulty to determine with enough accuracy the composition of the atmosphere. Total OH reactivity, which is defined as the total loss of the hydroxyl radical in the atmosphere, has proved to be an excellent tool to identify indirectly the important reactive species in ambient air. High levels of unknown reactivity were found in several forests worldwide and were often higher than at urban sites. Such results demonstrated the importance of OH reactivity for characterizing two of the major unknowns currently present associated to forests: the set of primary emissions from the canopy to the atmosphere and biogenic compounds oxidation pathways. Previous studies also highlighted the need to quantify OH reactivity and missing OH reactivity at more forested sites. Our study presents results of a field experiment conducted during late spring 2014 at the forest site at the Observatoire de Haute Provence, OHP, France. The forest is mainly composed of downy oak trees, a deciduous tree species characteristic of the Mediterranean region. We deployed the Comparative Reactivity Method and a set of state-of-the-art techniques such as Proton Transfer Reaction-Mass Spectrometry and Gas Chromatography to measure the total OH reactivity, the concentration of volatile organic compounds and main atmospheric constituents at the site. We sampled the air masses at two heights: 2 m, i.e. inside the canopy, and 10 m, i.e. above the canopy, where the mean canopy height is 5 m. We found that the OH reactivity at the site mainly depended on the main primary biogenic species emitted by the forest, which was isoprene and to a lesser extent by its degradation products and long lived atmospheric compounds (up to 26 % during daytime). We determined that the daytime total measured reactivity equaled the calculated reactivity obtained from the concentrations of the compounds measured at the site. Hence, no

  19. Upper Wisconsinan submarine end moraines off Cape Ann, Massachusetts

    USGS Publications Warehouse

    Oldale, R.N.

    1985-01-01

    Seismic profiles across the southwest end of Jeffreys Ledge, a bathymetric high north of Cape Ann, Massachusetts, reveal two end moraines. The moraines overlie upper Wisconsinan glacialmarine silty clay and are composed mostly of subaqueous ice-contact deposits and outwash. They were formed below sea level in water depths of as much as 120 m during fluctuations of a calving ice front. The moraines are late Wisconsinan in age and were formed after the Cambridge readvance, about 14,000 yr B.P., and before the Kennebunk readvance, about 13,000 yr B.P. They represent fluctuations of the ice front during overall retreat of Laurentide ice from the Gulf of Maine and New England. ?? 1985.

  20. ETM-ANN Approach Application for Thiobenzamide and Quinolizidine Derivatives

    PubMed Central

    Saracoglu, M.; Kandemirli, F.; Kovalishyn, V.; Arslan, T.; Ebenso, E. E.

    2010-01-01

    The structure anti-influenza activity relationships of thiobenzamide and quinolizidine derivatives, being influenza fusion inhibitors, have been investigated using the electronic-topological method (ETM) and artificial neural network (ANN) method. Molecular fragments specific for active compounds and breaks of activity were calculated for influenza fusion inhibitors by applying the ETM. QSAR descriptors such as molecular weight, EHOMO, ELUMO, ΔE, chemical potential, softness, electrophilicity index, dipole moment, and so forth were calculated, and it was found to give good statistical qualities (classified correctly 92%, or 48 compounds from 52 in training set, and 69% or 9 compounds from 13 in the external test set). By using multiple linear regression, several QSAR models were performed with the help of calculated descriptors and the compounds activity data. Among the obtained QSAR models, statistically the most significant one is the one of skeleton 1 with R2 = 0.999. PMID:20871848

  1. ETM-ANN approach application for thiobenzamide and quinolizidine derivatives.

    PubMed

    Saracoglu, M; Kandemirli, F; Kovalishyn, V; Arslan, T; Ebenso, E E

    2010-01-01

    The structure anti-influenza activity relationships of thiobenzamide and quinolizidine derivatives, being influenza fusion inhibitors, have been investigated using the electronic-topological method (ETM) and artificial neural network (ANN) method. Molecular fragments specific for active compounds and breaks of activity were calculated for influenza fusion inhibitors by applying the ETM. QSAR descriptors such as molecular weight, E(HOMO), E(LUMO), ΔE, chemical potential, softness, electrophilicity index, dipole moment, and so forth were calculated, and it was found to give good statistical qualities (classified correctly 92%, or 48 compounds from 52 in training set, and 69% or 9 compounds from 13 in the external test set). By using multiple linear regression, several QSAR models were performed with the help of calculated descriptors and the compounds activity data. Among the obtained QSAR models, statistically the most significant one is the one of skeleton 1 with R(2) = 0.999.

  2. Hybridization of GA and ANN to Solve Graph Coloring

    NASA Astrophysics Data System (ADS)

    Maitra, Timir; Pal, Anindya J.; Choi, Minkyu; Kim, Taihoon

    A recent and very promising approach for combinatorial optimization is to embed local search into the framework of evolutionary algorithms. In this paper, we present one efficient hybrid algorithms for the graph coloring problem. Here we have considered the hybridization of Boltzmann Machine (BM) of Artificial Neural Network with Genetic Algorithms. Genetic algorithm we have used to generate different coloration of a graph quickly on which we have applied boltzmann machine approach. Unlike traditional approaches of GA and ANN the proposed hybrid algorithm is guranteed to have 100% convergence rate to valid solution with no parameter tuning. Experiments of such a hybrid algorithm are carried out on large DIMACS Challenge benchmark graphs. Results prove very competitive. Analysis of the behavior of the algorithm sheds light on ways to further improvement.

  3. Evaluation of the use of remotely sensed evapotranspiration estimates into AnnAGNPS pollution model

    USDA-ARS?s Scientific Manuscript database

    The utilization of evapotranspiration (ET) estimates, derived from satellite remote sensing, into the Annualized Agricultural Non-Point Source (AnnAGNPS) pollution model was investigated. Modifications within AnnAGNPS were performed to allow the internal calculations of ET based on climate parameter...

  4. 33 CFR 80.115 - Portland Head, ME to Cape Ann, MA.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Portland Head, ME to Cape Ann, MA... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.115 Portland Head, ME to Cape Ann... harbors, bays, and inlets on the east coast of Maine, New Hampshire, and Massachusetts from Portland...

  5. 33 CFR 80.115 - Portland Head, ME to Cape Ann, MA.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Portland Head, ME to Cape Ann, MA... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.115 Portland Head, ME to Cape Ann... harbors, bays, and inlets on the east coast of Maine, New Hampshire, and Massachusetts from Portland...

  6. 33 CFR 80.115 - Portland Head, ME to Cape Ann, MA.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Portland Head, ME to Cape Ann, MA... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.115 Portland Head, ME to Cape Ann... harbors, bays, and inlets on the east coast of Maine, New Hampshire, and Massachusetts from Portland...

  7. Anne Frank in Historical Perspective: A Teaching Guide for Secondary Schools.

    ERIC Educational Resources Information Center

    Grobman, Alex; Fishman, Joel

    This guide helps secondary students to understand "The Diary of Anne Frank" through a series of short essays, maps, and photographs. In view of new scholarship, the historical context in which Anne Frank wrote may be studied to improve the student's perspective of recent history and of the present. A drawing shows the hiding place in the…

  8. 78 FR 41993 - Ann Arbor Railroad, Inc.-Lease Exemption-Norfolk Southern Railway Company

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-07-12

    ... Surface Transportation Board Ann Arbor Railroad, Inc.--Lease Exemption--Norfolk Southern Railway Company... of exemption should be issued, and does so here. Notice Ann Arbor Railroad, Inc. (AARR), a Class III... Southern Railway Company (NSR) two rail lines totaling 3.69 miles: (1) A line of railroad between...

  9. Visual NNet: An Educational ANN's Simulation Environment Reusing Matlab Neural Networks Toolbox

    ERIC Educational Resources Information Center

    Garcia-Roselló, Emilio; González-Dacosta, Jacinto; Lado, Maria J.; Méndez, Arturo J.; Garcia Pérez-Schofield, Baltasar; Ferrer, Fátima

    2011-01-01

    Artificial Neural Networks (ANN's) are nowadays a common subject in different curricula of graduate and postgraduate studies. Due to the complex algorithms involved and the dynamic nature of ANN's, simulation software has been commonly used to teach this subject. This software has usually been developed specifically for learning purposes, because…

  10. 33 CFR 80.120 - Cape Ann, MA to Marblehead Neck, MA.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Cape Ann, MA to Marblehead Neck, MA. 80.120 Section 80.120 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.120 Cape Ann, MA...

  11. The final days of Edgar Allan Poe: clues to an old mystery using 21st century medical science.

    PubMed

    Francis, Roger A

    This study examines all documented information regarding the final days and death of Edgar Allan Poe (1809-1849), in an attempt to determine the most likely cause of death of the American poet, short story writer, and literary critic. Information was gathered from letters, newspaper accounts, and magazine articles written during the period after Poe's death, and also from biographies and medical journal articles written up until the present. A chronology of Poe's final days was constructed, and this was used to form a differential diagnosis of possible causes of death. Death theories over the last 160 years were analyzed using this information. This analysis, along with a review of Poe's past medical history, would seem to support an alcohol-related cause of death.

  12. Regolith breccia Allan Hills A81005 - Evidence of lunar origin, and petrography of pristine and nonpristine clasts

    NASA Technical Reports Server (NTRS)

    Warren, P. H.; Taylor, G. J.; Keil, K.

    1983-01-01

    It is shown that the ratios of MnO/FeO in pyroxene, texture (abundant brown and swirly glass, which are typical of lunar regolith breccias) and overall composition (approximately 75 percent plagioclase) indicate a lunar origin for the regolith breccia Allan Hills A81005, presumably from an unsampled region of the moon. The rock is found to differ in detail from other regolith samples; for example, it has exceptionally low contents of Na and KREEP. In addition, a pristine clast is found to contain exceptionally coarse augite in comparison with similar Apollo samples. It is found that ALHA81005 is not perceptibly more shocked than typical Apollo regolith breccias. It is concluded that the discovery of this rock on earth strengthens the suggestion that SNC achondrites were derived by impact ejection from Mars.

  13. A 7-month-old male with Allan-Herndon-Dudley syndrome and the power of T3.

    PubMed

    Langley, Katherine G; Trau, Steven; Bean, Lora J H; Narravula, Alekhya; Schrier Vergano, Samantha A

    2015-05-01

    Allan-Herndon-Dudley syndrome (AHDS, MIM 300523) is an X-linked neurodegenerative disorder characterized by intellectual disability, severe hypotonia, diminished muscle mass, and progressive spastic paraplegia. All affected males have pathognomonic thyroid profiles with an elevated T3 , low-normal free T4 , and normal TSH. Mutations in the monocarboxylate transporter 8 (MCT8) gene, SLC16A2, have been found to be causative. Here, we describe a proband whose extensive evaluation and ultimate diagnosis of AHDS unmasked three previously undiagnosed generations of affected individuals in one family. This case illustrates the need for clinicians to consider obtaining full thyroid studies on individuals with the non-specific findings of severe hypotonia, failure to thrive, and gross motor delay.

  14. iAnn: an event sharing platform for the life sciences

    PubMed Central

    Jimenez, Rafael C.; Albar, Juan P.; Bhak, Jong; Blatter, Marie-Claude; Blicher, Thomas; Brazas, Michelle D.; Brooksbank, Cath; Budd, Aidan; De Las Rivas, Javier; Dreyer, Jacqueline; van Driel, Marc A.; Dunn, Michael J.; Fernandes, Pedro L.; van Gelder, Celia W. G.; Hermjakob, Henning; Ioannidis, Vassilios; Judge, David P.; Kahlem, Pascal; Korpelainen, Eija; Kraus, Hans-Joachim; Loveland, Jane; Mayer, Christine; McDowall, Jennifer; Moran, Federico; Mulder, Nicola; Nyronen, Tommi; Rother, Kristian; Salazar, Gustavo A.; Schneider, Reinhard; Via, Allegra; Villaveces, Jose M.; Yu, Ping; Schneider, Maria V.; Attwood, Teresa K.; Corpas, Manuel

    2013-01-01

    Summary: We present iAnn, an open source community-driven platform for dissemination of life science events, such as courses, conferences and workshops. iAnn allows automatic visualisation and integration of customised event reports. A central repository lies at the core of the platform: curators add submitted events, and these are subsequently accessed via web services. Thus, once an iAnn widget is incorporated into a website, it permanently shows timely relevant information as if it were native to the remote site. At the same time, announcements submitted to the repository are automatically disseminated to all portals that query the system. To facilitate the visualization of announcements, iAnn provides powerful filtering options and views, integrated in Google Maps and Google Calendar. All iAnn widgets are freely available. Availability: http://iann.pro/iannviewer Contact: manuel.corpas@tgac.ac.uk PMID:23742982

  15. iAnn: an event sharing platform for the life sciences.

    PubMed

    Jimenez, Rafael C; Albar, Juan P; Bhak, Jong; Blatter, Marie-Claude; Blicher, Thomas; Brazas, Michelle D; Brooksbank, Cath; Budd, Aidan; De Las Rivas, Javier; Dreyer, Jacqueline; van Driel, Marc A; Dunn, Michael J; Fernandes, Pedro L; van Gelder, Celia W G; Hermjakob, Henning; Ioannidis, Vassilios; Judge, David P; Kahlem, Pascal; Korpelainen, Eija; Kraus, Hans-Joachim; Loveland, Jane; Mayer, Christine; McDowall, Jennifer; Moran, Federico; Mulder, Nicola; Nyronen, Tommi; Rother, Kristian; Salazar, Gustavo A; Schneider, Reinhard; Via, Allegra; Villaveces, Jose M; Yu, Ping; Schneider, Maria V; Attwood, Teresa K; Corpas, Manuel

    2013-08-01

    We present iAnn, an open source community-driven platform for dissemination of life science events, such as courses, conferences and workshops. iAnn allows automatic visualisation and integration of customised event reports. A central repository lies at the core of the platform: curators add submitted events, and these are subsequently accessed via web services. Thus, once an iAnn widget is incorporated into a website, it permanently shows timely relevant information as if it were native to the remote site. At the same time, announcements submitted to the repository are automatically disseminated to all portals that query the system. To facilitate the visualization of announcements, iAnn provides powerful filtering options and views, integrated in Google Maps and Google Calendar. All iAnn widgets are freely available. http://iann.pro/iannviewer manuel.corpas@tgac.ac.uk.

  16. Modification of an RBF ANN-Based Temperature Compensation Model of Interferometric Fiber Optical Gyroscopes

    PubMed Central

    Cheng, Jianhua; Qi, Bing; Chen, Daidai; Jr. Landry, René

    2015-01-01

    This paper presents modification of Radial Basis Function Artificial Neural Network (RBF ANN)-based temperature compensation models for Interferometric Fiber Optical Gyroscopes (IFOGs). Based on the mathematical expression of IFOG output, three temperature relevant terms are extracted, which include: (1) temperature of fiber loops; (2) temperature variation of fiber loops; (3) temperature product term of fiber loops. Then, the input-modified RBF ANN-based temperature compensation scheme is established, in which temperature relevant terms are transferred to train the RBF ANN. Experimental temperature tests are conducted and sufficient data are collected and post-processed to form the novel RBF ANN. Finally, we apply the modified RBF ANN based on temperature compensation model in two IFOGs with temperature compensation capabilities. The experimental results show the proposed temperature compensation model could efficiently reduce the influence of environment temperature on the output of IFOG, and exhibit a better temperature compensation performance than conventional scheme without proposed improvements. PMID:25985163

  17. A mutation within the leucine-rich repeat domain of the Arabidopsis disease resistance gene RPS5 partially suppresses multiple bacterial and downy mildew resistance genes.

    PubMed Central

    Warren, R F; Henk, A; Mowery, P; Holub, E; Innes, R W

    1998-01-01

    Recognition of pathogens by plants is mediated by several distinct families of functionally variable but structurally related disease resistance (R) genes. The largest family is defined by the presence of a putative nucleotide binding domain and 12 to 21 leucine-rich repeats (LRRs). The function of these LRRs has not been defined, but they are speculated to bind pathogen-derived ligands. We have isolated a mutation in the Arabidopsis RPS5 gene that indicates that the LRR region may interact with other plant proteins. The rps5-1 mutation causes a glutamate-to-lysine substitution in the third LRR and partially compromises the function of several R genes that confer bacterial and downy mildew resistance. The third LRR is relatively well conserved, and we speculate that it may interact with a signal transduction component shared by multiple R gene pathways. PMID:9724691

  18. Coupling Spore Traps and Quantitative PCR Assays for Detection of the Downy Mildew Pathogens of Spinach (Peronospora effusa) and Beet (P. schachtii)

    PubMed Central

    Klosterman, Steven J.; Anchieta, Amy; McRoberts, Neil; Koike, Steven T.; Subbarao, Krishna V.; Voglmayr, Hermann; Choi, Young-Joon; Thines, Marco; Martin, Frank N.

    2016-01-01

    Downy mildew of spinach (Spinacia oleracea), caused by Peronospora effusa, is a production constraint on production worldwide, including in California, where the majority of U.S. spinach is grown. The aim of this study was to develop a real-time quantitative polymerase chain reaction (qPCR) assay for detection of airborne inoculum of P. effusa in California. Among oomycete ribosomal DNA (rDNA) sequences examined for assay development, the highest nucleotide sequence identity was observed between rDNA sequences of P. effusa and P. schachtii, the cause of downy mildew on sugar beet and Swiss chard in the leaf beet group (Beta vulgaris subsp. vulgaris). Single-nucleotide polymorphisms were detected between P. effusa and P. schachtii in the 18S rDNA regions for design of P. effusa- and P. schachtii-specific TaqMan probes and reverse primers. An allele-specific probe and primer amplification method was applied to determine the frequency of both P. effusa and P. schachtii rDNA target sequences in pooled DNA samples, enabling quantification of rDNA of P. effusa from impaction spore trap samples collected from spinach production fields. The rDNA copy numbers of P. effusa were, on average, ≈3,300-fold higher from trap samples collected near an infected field compared with those levels recorded at a site without a nearby spinach field. In combination with disease-conducive weather forecasting, application of the assays may be helpful to time fungicide applications for disease management. PMID:24964150

  19. Molecular cloning of a CC-NBS-LRR gene from Vitis quinquangularis and its expression pattern in response to downy mildew pathogen infection.

    PubMed

    Zhang, Shuwei; Ding, Feng; Peng, Hongxiang; Huang, Yu; Lu, Jiang

    2017-09-01

    Downy mildew, caused by Plasmopara viticola, can result in a substantial decrease in grapevine productivity. Vitis vinifera is a widely cultivated grapevine species, which is susceptible to this disease. Repeated pesticide applications are harmful for both the environment and human health. Thus, it is essential to develop varieties/cultivars that are resistant to downy mildew and other diseases. In our previous studies, we investigated the natural resistance of the Chinese wild grapevine V. quinquangularis accession 'PS' against P. viticola and obtained several candidate resistance (R) genes that may play important roles in plant disease resistance. In the present study, we isolated a CC-NBS-LRR-type R gene from 'PS' and designated it VqCN. Its open reading frame is 2676 bp which encodes a protein of 891 amino acids with a predicted molecular mass of 102.12 kDa and predicted isoelectric point of 6.53. Multiple alignments with other disease resistant (R) proteins revealed a conserved phosphate-binding loop (P-loop), resistance nucleotide binding site, a hydrophobic domain (GLPL) and methionine-histidine-aspartate (MHD) motifs, which are typical components of nucleotide-binding site leucine-rich repeat proteins, as well as a coiled-coil region in the N-terminus. Quantitative real-time polymerase chain reaction analysis showed that the transcript of VqCN was rapidly and highly induced after infection with P. viticola in 'PS'. Moreover, the leaves of susceptible 'Cabernet Sauvignon' transiently expressing VqCN manifested increased resistance to P. viticola. The results indicated that VqCN might play a positive role in protecting grapevine against infection with P. viticola. Cloning and functional analysis of a putative resistance gene provide a basis for disease-resistance breeding.

  20. Predicting stream water quality using artificial neural networks (ANN)

    SciTech Connect

    Bowers, J.A.

    2000-05-17

    Predicting point and nonpoint source runoff of dissolved and suspended materials into their receiving streams is important to protecting water quality and traditionally has been modeled using deterministic or statistical methods. The purpose of this study was to predict water quality in small streams using an Artificial Neural Network (ANN). The selected input variables were local precipitation, stream flow rates and turbidity for the initial prediction of suspended solids in the stream. A single hidden-layer feedforward neural network using backpropagation learning algorithms was developed with a detailed analysis of model design of those factors affecting successful implementation of the model. All features of a feedforward neural model were investigated including training set creation, number and layers of neurons, neural activation functions, and backpropagation algorithms. Least-squares regression was used to compare model predictions with test data sets. Most of the model configurations offered excellent predictive capabilities. Using either the logistic or the hyperbolic tangent neural activation function did not significantly affect predicted results. This was also true for the two learning algorithms tested, the Levenberg-Marquardt and Polak-Ribiere conjugate-gradient descent methods. The most important step during model development and training was the representative selection of data records for training of the model.

  1. Optimization of Nd: YAG Laser Marking of Alumina Ceramic Using RSM And ANN

    SciTech Connect

    Peter, Josephine; Doloi, B.; Bhattacharyya, B.

    2011-01-17

    The present research papers deals with the artificial neural network (ANN) and the response surface methodology (RSM) based mathematical modeling and also an optimization analysis on marking characteristics on alumina ceramic. The experiments have been planned and carried out based on Design of Experiment (DOE). It also analyses the influence of the major laser marking process parameters and the optimal combination of laser marking process parametric setting has been obtained. The output of the RSM optimal data is validated through experimentation and ANN predictive model. A good agreement is observed between the results based on ANN predictive model and actual experimental observations.

  2. Geological evolution of the Coombs Allan Hills area, Ferrar large igneous province, Antarctica: Debris avalanches, mafic pyroclastic density currents, phreatocauldrons

    NASA Astrophysics Data System (ADS)

    Ross, Pierre-Simon; White, James D. L.; McClintock, Murray

    2008-05-01

    The Jurassic Ferrar large igneous province of Antarctica comprises igneous intrusions, flood lavas, and mafic volcaniclastic deposits (now lithified). The latter rocks are particularly diverse and well-exposed in the Coombs-Allan Hills area of South Victoria Land, where they are assigned to the Mawson Formation. In this paper we use these rocks in conjunction with the pre-Ferrar sedimentary rocks (Beacon Supergroup) and the lavas themselves (Kirkpatrick Basalt) to reconstruct the geomorphological and geological evolution of the landscape. In the Early Jurassic, the surface of the region was an alluvial plain, with perhaps 1 km of mostly continental siliciclastic sediments underlying it. After the fall of silicic ash from an unknown but probably distal source, mafic magmatism of the Ferrar province began. The oldest record of this event at Allan Hills is a ≤ 180 m-thick debris-avalanche deposit (member m1 of the Mawson Formation) which contains globular domains of mafic igneous rock. These domains are inferred to represent dismembered Ferrar intrusions emplaced in the source area of the debris avalanche; shallow emplacement of Ferrar magmas caused a slope failure that mobilized the uppermost Beacon Supergroup, and the silicic ash deposits, into a pre-existing valley or basin. The period which followed ('Mawson time') was the main stage for explosive eruptions in the Ferrar province, and several cubic kilometres of both new magma and sedimentary rock were fragmented over many years. Phreatomagmatic explosions were the dominant fragmentation mechanism, with magma-water interaction taking place in both sedimentary aquifers and existing vents filled by volcaniclastic debris. At Coombs Hills, a vent complex or 'phreatocauldron' was formed by coalescence of diatreme-like structures; at Allan Hills, member m2 of the Mawson Formation consists mostly of thick, coarse-grained, poorly sorted layers inferred to represent the lithified deposits of pyroclastic density currents

  3. Further Insights into the Allan-Herndon-Dudley Syndrome: Clinical and Functional Characterization of a Novel MCT8 Mutation

    PubMed Central

    Yoon, Grace; Visser, Theo J.

    2015-01-01

    Background Mutations in the thyroid hormone (TH) transporter MCT8 have been identified as the cause for Allan-Herndon-Dudley Syndrome (AHDS), characterized by severe psychomotor retardation and altered TH serum levels. Here we report a novel MCT8 mutation identified in 4 generations of one family, and its functional characterization. Methods Proband and family members were screened for 60 genes involved in X-linked cognitive impairment and the MCT8 mutation was confirmed. Functional consequences of MCT8 mutations were studied by analysis of [125I]TH transport in fibroblasts and transiently transfected JEG3 and COS1 cells, and by subcellular localization of the transporter. Results The proband and a male cousin demonstrated clinical findings characteristic of AHDS. Serum analysis showed high T3, low rT3, and normal T4 and TSH levels in the proband. A MCT8 mutation (c.869C>T; p.S290F) was identified in the proband, his cousin, and several female carriers. Functional analysis of the S290F mutant showed decreased TH transport, metabolism and protein expression in the three cell types, whereas the S290A mutation had no effect. Interestingly, both uptake and efflux of T3 and T4 was impaired in fibroblasts of the proband, compared to his healthy brother. However, no effect of the S290F mutation was observed on TH efflux from COS1 and JEG3 cells. Immunocytochemistry showed plasma membrane localization of wild-type MCT8 and the S290A and S290F mutants in JEG3 cells. Conclusions We describe a novel MCT8 mutation (S290F) in 4 generations of a family with Allan-Herndon-Dudley Syndrome. Functional analysis demonstrates loss-of-function of the MCT8 transporter. Furthermore, our results indicate that the function of the S290F mutant is dependent on cell context. Comparison of the S290F and S290A mutants indicates that it is not the loss of Ser but its substitution with Phe, which leads to S290F dysfunction. PMID:26426690

  4. ANN application for prediction of atmospheric nitrogen deposition to aquatic ecosystems.

    PubMed

    Palani, Sundarambal; Tkalich, Pavel; Balasubramanian, Rajasekhar; Palanichamy, Jegathambal

    2011-06-01

    The occurrences of increased atmospheric nitrogen deposition (ADN) in Southeast Asia during smoke haze episodes have undesired consequences on receiving aquatic ecosystems. A successful prediction of episodic ADN will allow a quantitative understanding of its possible impacts. In this study, an artificial neural network (ANN) model is used to estimate atmospheric deposition of total nitrogen (TN) and organic nitrogen (ON) concentrations to coastal aquatic ecosystems. The selected model input variables were nitrogen species from atmospheric deposition, Total Suspended Particulates, Pollutant Standards Index and meteorological parameters. ANN models predictions were also compared with multiple linear regression model having the same inputs and output. ANN model performance was found relatively more accurate in its predictions and adequate even for high-concentration events with acceptable minimum error. The developed ANN model can be used as a forecasting tool to complement the current TN and ON analysis within the atmospheric deposition-monitoring program in the region. Copyright © 2011 Elsevier Ltd. All rights reserved.

  5. Flowering a Feminist Garden: The Writings and Poetry of Anne Spencer.

    ERIC Educational Resources Information Center

    Ford, Charita M.

    1988-01-01

    Reviews the life and poetry of Anne Spencer, one of the "lost" poets of the Harlem Renaissance. Discusses her varied and effective use of imagery and examines the Black and feminist perspectives of her work. (FMW)

  6. Prediction of selectivity coefficients of a theophylline-selective electrode using MLR and ANN.

    PubMed

    Riahi, S; Mousavi, M F; Shamsipur, M

    2006-05-15

    The selectivity coefficient of 24 interfering compounds (drugs, amino acids and organic compounds) of a theophylline-selective electrode was predicted using an artificial neural network (ANN). The multiple linear regression (MLR) technique was used to select the descriptors as inputs for the artificial neural network. The neural network employed here is a connected back-propagation model with a 2-2-1 architecture. Two topological indices for the interfering compounds, namely, Narumi harmonic topological index, HNar, and sum of topological distances between nitrogen and oxygen, T(Ncdots, three dots, centeredO), were taken as inputs for the ANN. Standard errors of training and prediction were 0.954 and 0.945, respectively, for the MLR model and 0.032 and 0.007, respectively, for the ANN model. Two topological indices for the interference of the electrode were taken as inputs for ANN.

  7. Monitoring and ANN modeling of coal stockpile behavior under different atmospheric conditions

    SciTech Connect

    Ozdeniz, A.H.; Ozbay, Y.; Yilmaz, N.; Sensogut, C.

    2008-07-01

    In this study, an industrial-sized stockpile of 5 m width, 4 m height, and 10 m length was built in a coal stock area to investigate coal stockpile behavior under different atmospheric conditions. The effective parameters on the coal stockpile that were time, weather temperature, atmospheric pressure, air humidity, velocity, and direction of wind values were automatically measured by means of a computer-aided measurement system to obtain Artificial Neural Network (ANN) input data. The coal stockpiles, which should be continuously observed, are capable of spontaneous combustion and then causing serious economical losses due to the mentioned parameters. Afterwards, these measurement values were used for training and testing of the ANN model. Comparison of the experimental and ANN results, accuracy rates of training, and testing were found as 98.6% and 98.7%, respectively. It is shown that possible coal stockpile behavior with this ANN model is powerfully estimated.

  8. TODAY: EPAs 2015 Technology Showcase in Ann Arbor Spotlights Heavy-Duty Vehicles

    EPA Pesticide Factsheets

    WASHINGTON - Today, Tuesday, October 13, the Environmental Protection Agency (EPA) will host the third Vehicle Technology Showcase in Ann Arbor, Mich. The event will highlight advanced technology to increase fuel efficiency and reduce vehicle greenh

  9. 4. JoAnn SieburgBaker, Photographer, September 1977. VIEW OF POWER BUILDING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    4. JoAnn Sieburg-Baker, Photographer, September 1977. VIEW OF POWER BUILDING (ELECTRICAL TRANSFORMER). - Salem Manufacturing Company, Arista Cotton Mill, Brookstown & Marshall Streets, Winston-Salem, Forsyth County, NC

  10. Objectivity and Commitment in Linguistic Science: The Case of the Black English Trial in Ann Arbor.

    ERIC Educational Resources Information Center

    Labov, William

    1982-01-01

    Discusses the factors that led to linguists being able to present effective testimony in the form of an unified view on the origins and structural characteristics of the Black English vernacular at the Ann Arbor trial. (EKN)

  11. Flowering a Feminist Garden: The Writings and Poetry of Anne Spencer.

    ERIC Educational Resources Information Center

    Ford, Charita M.

    1988-01-01

    Reviews the life and poetry of Anne Spencer, one of the "lost" poets of the Harlem Renaissance. Discusses her varied and effective use of imagery and examines the Black and feminist perspectives of her work. (FMW)

  12. Water-quality data collected at Lake Anne, Reston, Virginia, 1997-1999

    USGS Publications Warehouse

    Conko, Kathryn M.; Kennedy, Margaret M.; Rice, Karen C.

    2000-01-01

    Samples from the Lake Anne watershed were collected and analyzed to assess the water quality from December 1997 through January 1999. Lake Anne is a stream impoundment in suburban Northern Virginia and its outflow is a sub-tributary of the Potomac River. Samples of wet deposition (precipitation), lake water, and streamwater that drain into and from Lake Anne were collected and analyzed. Trace-element clean sampling and analysis protocols were followed throughout the project. This report is a compilation of the precipitation, lake-water, and streamwater data collected in the Lake Anne watershed and the associated quality assurance/quality control data. Concentrations of the trace elements arsenic, barium, cadmium, chromium, copper, lead, manganese, nickel, strontium, vanadium, and zinc, and of the major inorganic ions, aluminum, bicarbonate, calcium, chloride, hydrogen ion, iron, magnesium, potassium, nitrate, sodium, and sulfate are reported.

  13. Objectivity and Commitment in Linguistic Science: The Case of the Black English Trial in Ann Arbor.

    ERIC Educational Resources Information Center

    Labov, William

    1982-01-01

    Discusses the factors that led to linguists being able to present effective testimony in the form of an unified view on the origins and structural characteristics of the Black English vernacular at the Ann Arbor trial. (EKN)

  14. 76 FR 81991 - Tecumseh Products Corporation, Ann Arbor, MI; Notice of Termination of Investigation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF LABOR Employment and Training Administration Tecumseh Products Corporation, Ann Arbor, MI; Notice of Termination of Investigation On September 15, 2011, the Department issued a Notice of Affirmative Determination...

  15. In Praise of Dissidence: Anne Lang-Etienne (1932-1991). Muriel Driver Memorial Lecture.

    ERIC Educational Resources Information Center

    Thibeault, Rachel

    2002-01-01

    Discusses the life and work of Anne Lang-Etienne, a dissident occupational therapist who moved and shaped a generation of Canadian therapists and spurred the profession to action for social change. Includes 18 references. (JOW)

  16. Review of Artificial Neural Networks (ANN) applied to corrosion monitoring

    NASA Astrophysics Data System (ADS)

    Mabbutt, S.; Picton, P.; Shaw, P.; Black, S.

    2012-05-01

    The assessment of corrosion within an engineering system often forms an important aspect of condition monitoring but it is a parameter that is inherently difficult to measure and predict. The electrochemical nature of the corrosion process allows precise measurements to be made. Advances in instruments, techniques and software have resulted in devices that can gather data and perform various analysis routines that provide parameters to identify corrosion type and corrosion rate. Although corrosion rates are important they are only useful where general or uniform corrosion dominates. However, pitting, inter-granular corrosion and environmentally assisted cracking (stress corrosion) are examples of corrosion mechanisms that can be dangerous and virtually invisible to the naked eye. Electrochemical noise (EN) monitoring is a very useful technique for detecting these types of corrosion and it is the only non-invasive electrochemical corrosion monitoring technique commonly available. Modern instrumentation is extremely sensitive to changes in the system and new experimental configurations for gathering EN data have been proven. In this paper the identification of localised corrosion by different data analysis routines has been reviewed. In particular the application of Artificial Neural Network (ANN) analysis to corrosion data is of key interest. In most instances data needs to be used with conventional theory to obtain meaningful information and relies on expert interpretation. Recently work has been carried out using artificial neural networks to investigate various types of corrosion data in attempts to predict corrosion behaviour with some success. This work aims to extend this earlier work to identify reliable electrochemical indicators of localised corrosion onset and propagation stages.

  17. Biosorption of chromium (VI) from aqueous solutions and ANN modelling.

    PubMed

    Nag, Soma; Mondal, Abhijit; Bar, Nirjhar; Das, Sudip Kumar

    2017-06-16

    The use of sustainable, green and biodegradable natural wastes for Cr(VI) detoxification from the contaminated wastewater is considered as a challenging issue. The present research is aimed to assess the effectiveness of seven different natural biomaterials, such as jackfruit leaf, mango leaf, onion peel, garlic peel, bamboo leaf, acid treated rubber leaf and coconut shell powder, for Cr(VI) eradication from aqueous solution by biosorption process. Characterizations were conducted using SEM, BET and FTIR spectroscopy. The effects of operating parameters, viz., pH, initial Cr(VI) ion concentration, adsorbent dosages, contact time and temperature on metal removal efficiency, were studied. The biosorption mechanism was described by the pseudo-second-order model and Langmuir isotherm model. The biosorption process was exothermic, spontaneous and chemical (except garlic peel) in nature. The sequence of adsorption capacity was mango leaf > jackfruit leaf > acid treated rubber leaf > onion peel > bamboo leaf > garlic peel > coconut shell with maximum Langmuir adsorption capacity of 35.7 mg g(-1) for mango leaf. The treated effluent can be reused. Desorption study suggested effective reuse of the adsorbents up to three cycles, and safe disposal method of the used adsorbents suggested biodegradability and sustainability of the process by reapplication of the spent adsorbent and ultimately leading towards zero wastages. The performances of the adsorbents were verified with wastewater from electroplating industry. The scale-up study reported for industrial applications. ANN modelling using multilayer perception with gradient descent (GD) and Levenberg-Marquart (LM) algorithm had been successfully used for prediction of Cr(VI) removal efficiency. The study explores the undiscovered potential of the natural waste materials for sustainable existence of small and medium sector industries, especially in the third world countries by protecting the environment by eco-innovation.

  18. ANN Prediction of Metabolic Syndrome: a Complex Puzzle that will be Completed.

    PubMed

    Ivanović, Darko; Kupusinac, Aleksandar; Stokić, Edita; Doroslovački, Rade; Ivetić, Dragan

    2016-12-01

    The diagnosis of metabolic syndrome (MetS) has a leading role in the early prevention of chronic disease, such as cardiovascular disease, type 2 diabetes, cancers and chronic kidney disease. It would be very greatful that MetS diagnosis can be predicted in everyday clinical practice. This paper presents artificial neural network (ANN) prediction of the diagnosis of MetS that includes solely non-invasive, low-cost and easily-obtained diagnostic methods. This solution can extract the risky persons and suggests complete tests only on them by saving money and time. ANN input vectors are very simple and contain solely non-invasive, low-cost and easily-obtained parameters: gender, age, body mass index, waist-to-height ratio, systolic and diastolic blood pressures. ANN output is M e t S-coefficient in true/false form, obtained from MetS definition of International Diabetes Federation (IDF). ANN training, validation and testing are conducted on the large dataset that includes 2928 persons. Feed-forward ANNs with 1-100 hidden neurons were considered and an optimal architecture were determinated. Comparison with other authors leads to the conclusion that our solution achieves the highest positive predictive value P P V = 0.8579. Further, obtained negative predictive value N P V = 0.8319 is also high and close to PPV, which means that our ANN solution is suitable both for positive and negative MetS prediction.

  19. Use of meteorological radar to estimate leaf wetness as data input for application of territorial epidemiological model (downy mildew—Plasmopara viticola)

    NASA Astrophysics Data System (ADS)

    Cicogna, A.; Dietrich, S.; Gani, M.; Giovanardi, R.; Sandra, M.

    The grapevine downy mildew ( Plasmopara viticola) represents the most important disease of the grapevine in Friuli-Venezia Giulia Region (Italy). The development of this disease depends from the meteorological conditions and particularly by air humidity, rain and leaf wetness (LW here after). Forecast models can help the technicians of the extension services to predict the timing and the best technique to use in operative programs. Unfortunately these models require data, coming from meteorological stations which are often variable in space (e.g. rain, leaf wetness) and hardly spatializable. In the first part of this work, a case study is presented to show the great difference between maps of daily rain duration, obtained by radar, and those created by spatialization of data and obtained by weather stations. Then the possibility to use the radar rain maps appears very interesting to estimate LW over a large area. LW and daily rain measurements, obtained by 14 weather stations of Friuli-Venezia Giulia plain (Italy), are compared with rain maps obtained by polarimetric radar GPM-500 placed in Fossalon di Grado (Friuli-Venezia Giulia, Italy). The reference measurements are made during two periods: from 1/4/2000 to 30/9/2000 and from 1/4/2001 to 30/9/2001. From radar maps rain measurements estimated are extracted above each weather station and these data are integrated for every hour. These radar data of hourly rain are compared to the corresponding measurementes of LW and rain obtained by weather stations. From this analysis it appears that there is a good correlation between the number of rain hours estimated by radar and the number of LW hours measured by stations: in the observed cases, the error found is lower than 2%; then radar has a good precision to estimate LW due to rain. Therefore the use of Radar is foretold to give meteorological inputs in simulation models that can work to evaluate the development of fungal diseases. In the second part a model to daily

  20. The first description of the complete natural history of uveal melanoma by two Scottish surgeons, Allan Burns and James Wardrop.

    PubMed

    Kivelä, Tero T

    2017-08-21

    James Wardrop (1782-1869), a young Scottish surgeon and an early ophthalmologist in Edinburgh, is credited for describing in 1809 retinoblastoma as an entity in his treatise 'Observations on Fungus Haematodes or Soft Cancer'. His treatise also reveals that Allan Burns (1781-1813), another young Scottish surgeon and anatomist, had invited Wardrop to assist in enucleating an eye from a 41-year-old Glasgow woman who, in retrospect, had a uveal melanoma. Her eye had become blind 4 months after symptoms of exudative retinal detachment had appeared, and it had become painful after a further 2-4 months. The tumour eventually perforated the sclera, and she died within a year thereafter of hepatic metastases. Burns and Wardrop went on to publish detailed parallel accounts of the symptoms, signs, ophthalmic pathology and post-mortem findings regarding the primary, recurrent and metastatic tumour. Burns may have performed the post-mortem after exhuming the body, a common occurrence in early 19th Century Scotland, a thriving hub for teaching morbid anatomy to young surgeons at the time. © 2017 Acta Ophthalmologica Scandinavica Foundation. Published by John Wiley & Sons Ltd.

  1. Allan Brooks, naturalist and artist (1869-1946): the travails of an early twentieth century wildlife illustrator in North America.

    PubMed

    Winearls, Joan

    2008-01-01

    British by birth Allan Cyril Brooks (1869-1946) emigrated to Canada in the 1880s, and became one of the most important North American bird illustrators during the first half of the twentieth century. Brooks was one of the leading ornithologists and wildlife collectors of the time; he corresponded extensively with other ornithologists and supplied specimens to many major North American museums. From the 1890s on he hoped to support himself by painting birds and mammals, but this was not possible in Canada at that time and he was forced to turn to American sources for illustration commissions. His work can be compared with that of his contemporary, the leading American bird painter Louis Agassiz Fuertes (1874-1927), and there are striking similarities and differences in their careers. This paper discusses the work of a talented, self-taught wildlife artist working in a North American milieu, his difficulties and successes in a newly developing field, and his quest for Canadian recognition.

  2. Fine-Grained Rims in the Allan Hills 81002 and Lewis Cliff 90500 CM2 Meteorites: Their Origin and Modification

    NASA Technical Reports Server (NTRS)

    Hua, X.; Wang, J.; Buseck, P. R.

    2002-01-01

    Antarctic CM meteorites Allan Hills (ALH) 8 1002 and Lewis Cliff (LEW) 90500 contain abundant fine-grained rims (FGRs) that surround a variety of coarse-grained objects. FGRs from both meteorites have similar compositions and petrographic features, independent of their enclosed objects. The FGRs are chemically homogeneous at the 10 m scale for major and minor elements and at the 25 m scale for trace elements. They display accretionary features and contain large amounts of volatiles, presumably water. They are depleted in Ca, Mn, and S but enriched in P. All FGRs show a slightly fractionated rare earth element (REE) pattern, with enrichments of Gd and Yb and depletion of Er. Gd is twice as abundant as Er. Our results indicate that those FGRs are not genetically related to their enclosed cores. They were sampled from a reservoir of homogeneously mixed dust, prior to accretion to their parent body. The rim materials subsequently experienced aqueous alteration under identical conditions. Based on their mineral, textural, and especially chemical similarities, we conclude that ALH 8 1002 and LEW 90500 likely have a similar or identical source.

  3. Diagenesis of Cretaceous sandstones of the Kootenay Formation at Elk Valley (southeastern British Columbia) and Mt Allan (southwestern Alberta)

    NASA Astrophysics Data System (ADS)

    Hutcheon, Ian; Oldershaw, Alan; Ghent, Edward D.

    1980-10-01

    Vitrinite reflectance data for two sections of the Kootenay Formation are different, but increase with depth. Illite crystallinities (XRD) are irregular with depth but detailed S.E.M. examination shows that crystal size and morphology increase with depth. At Elk Valley (low reflectance) S.E.M. examination shows kaolinite + dolomite as the authigenic assemblage. At Mt Allan (45 km north, higher reflectance) kaolinite disappears at 265 m and chlorite + calcite appears implying the equilibrium 5 CaMg( CO3) 2 + Al2Si2O5( OH) 4 + SiO2 + H2OagMg5Al2Si3O10( OH) 8 + 5 CaCO3 + 5 CO2. (1) Equilibrium (1) involves CO 2 and H 2O which form an immiscible fluid at diagenetic conditions. Thermochemical data, activity coefficients for the fluid mixture (Margules solution model), and fugacity coefficients allow the position of intersection of the miscibility surface and equilibria similar to (1) to be calculated. Maximum temperatures (180-250°C) in water-rich fluids are in accord with geothermal gradients of 33°C/km and temperatures from vitrinite reflectance (220°C). It is suggested that produced CO 2 may be responsible for the development of secondary porosity during deep burial.

  4. Fine-grained rims in the Allan Hills 81002 and Lewis Cliff 90500 CM2 meteorites: Their origin and modification

    NASA Astrophysics Data System (ADS)

    Hua, X.; Wang, J.; Buseck, P. R.

    2002-02-01

    Antarctic CM meteorites Allan Hills (ALH) 81002 and Lewis Cliff (LEW) 90500 contain abundant fine-grained rims (FGRs) that surround a variety of coarse-grained objects. FGRs from both meteorites have similar compositions and petrographic features, independent of their enclosed objects. The FGRs are chemically homogeneous at the 10 ?m scale for major and minor elements and at the 25 ?m scale for trace elements. They display accretionary features and contain large amounts of volatiles, presumably water. They are depleted in Ca, Mn, and S but enriched in P. All FGRs show a slightly fractionated rare earth element (REE) pattern, with enrichments of Gd and Yb and depletion of Er. Gd is twice as abundant as Er. Our results indicate that those FGRs are not genetically related to their enclosed cores. They were sampled from a reservoir of homogeneously mixed dust, prior to accretion to their parent body. The rim materials subsequently experienced aqueous alteration under identical conditions. Based on their mineral, textural, and especially chemical similarities, we conclude that ALH 81002 and LEW 90500 likely have a similar or identical source.

  5. Fine-Grained Rims in the Allan Hills 81002 and Lewis Cliff 90500 CM2 Meteorites: Their Origin and Modification

    NASA Technical Reports Server (NTRS)

    Hua, X.; Wang, J.; Buseck, P. R.

    2002-01-01

    Antarctic CM meteorites Allan Hills (ALH) 8 1002 and Lewis Cliff (LEW) 90500 contain abundant fine-grained rims (FGRs) that surround a variety of coarse-grained objects. FGRs from both meteorites have similar compositions and petrographic features, independent of their enclosed objects. The FGRs are chemically homogeneous at the 10 m scale for major and minor elements and at the 25 m scale for trace elements. They display accretionary features and contain large amounts of volatiles, presumably water. They are depleted in Ca, Mn, and S but enriched in P. All FGRs show a slightly fractionated rare earth element (REE) pattern, with enrichments of Gd and Yb and depletion of Er. Gd is twice as abundant as Er. Our results indicate that those FGRs are not genetically related to their enclosed cores. They were sampled from a reservoir of homogeneously mixed dust, prior to accretion to their parent body. The rim materials subsequently experienced aqueous alteration under identical conditions. Based on their mineral, textural, and especially chemical similarities, we conclude that ALH 8 1002 and LEW 90500 likely have a similar or identical source.

  6. Novel Formulation of Adaptive MPC as EKF Using ANN Model: Multiproduct Semibatch Polymerization Reactor Case Study.

    PubMed

    Kamesh, Reddi; Rani, Kalipatnapu Yamuna

    2016-10-13

    In this paper, a novel formulation for nonlinear model predictive control (MPC) has been proposed incorporating the extended Kalman filter (EKF) control concept using a purely data-driven artificial neural network (ANN) model based on measurements for supervisory control. The proposed scheme consists of two modules focusing on online parameter estimation based on past measurements and control estimation over control horizon based on minimizing the deviation of model output predictions from set points along the prediction horizon. An industrial case study for temperature control of a multiproduct semibatch polymerization reactor posed as a challenge problem has been considered as a test bed to apply the proposed ANN-EKFMPC strategy at supervisory level as a cascade control configuration along with proportional integral controller [ANN-EKFMPC with PI (ANN-EKFMPC-PI)]. The proposed approach is formulated incorporating all aspects of MPC including move suppression factor for control effort minimization and constraint-handling capability including terminal constraints. The nominal stability analysis and offset-free tracking capabilities of the proposed controller are proved. Its performance is evaluated by comparison with a standard MPC-based cascade control approach using the same adaptive ANN model. The ANN-EKFMPC-PI control configuration has shown better controller performance in terms of temperature tracking, smoother input profiles, as well as constraint-handling ability compared with the ANN-MPC with PI approach for two products in summer and winter. The proposed scheme is found to be versatile although it is based on a purely data-driven model with online parameter estimation.

  7. New consensus multivariate models based on PLS and ANN studies of sigma-1 receptor antagonists.

    PubMed

    Oliveira, Aline A; Lipinski, Célio F; Pereira, Estevão B; Honorio, Kathia M; Oliveira, Patrícia R; Weber, Karen C; Romero, Roseli A F; de Sousa, Alexsandro G; da Silva, Albérico B F

    2017-10-02

    The treatment of neuropathic pain is very complex and there are few drugs approved for this purpose. Among the studied compounds in the literature, sigma-1 receptor antagonists have shown to be promising. In order to develop QSAR studies applied to the compounds of 1-arylpyrazole derivatives, multivariate analyses have been performed in this work using partial least square (PLS) and artificial neural network (ANN) methods. A PLS model has been obtained and validated with 45 compounds in the training set and 13 compounds in the test set (r(2)training = 0.761, q(2) = 0.656, r(2)test = 0.746, MSEtest = 0.132 and MAEtest = 0.258). Additionally, multi-layer perceptron ANNs (MLP-ANNs) were employed in order to propose non-linear models trained by gradient descent with momentum backpropagation function. Based on MSEtest values, the best MLP-ANN models were combined in a MLP-ANN consensus model (MLP-ANN-CM; r(2)test = 0.824, MSEtest = 0.088 and MAEtest = 0.197). In the end, a general consensus model (GCM) has been obtained using PLS and MLP-ANN-CM models (r(2)test = 0.811, MSEtest = 0.100 and MAEtest = 0.218). Besides, the selected descriptors (GGI6, Mor23m, SRW06, H7m, MLOGP, and μ) revealed important features that should be considered when one is planning new compounds of the 1-arylpyrazole class. The multivariate models proposed in this work are definitely a powerful tool for the rational drug design of new compounds for neuropathic pain treatment. Graphical abstract Main scaffold of the 1-arylpyrazole derivatives and the selected descriptors.

  8. Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew pathogens with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data.

    PubMed

    Voglmayr, Hermann; Riethmüller, Alexandra; Göker, Markus; Weiss, Michael; Oberwinkler, Franz

    2004-09-01

    Bayesian and maximum parsimony phylogenetic analyses of 92 collections of the genera Basidiophora, Bremia, Paraperonospora, Phytophthora and Plasmopara were performed using nuclear large subunit ribosomal DNA sequences containing the D1 and D2 regions. In the Bayesian tree, two main clades were apparent: one clade containing Plasmopara pygmaea s. lat., Pl. sphaerosperma, Basidiophora, Bremia and Paraperonospora, and a clade containing all other Plasmopara species. Plasmopara is shown to be polyphyletic, and Pl. sphaerosperma is transferred to a new genus, Protobremia, for which also the oospore characteristics are described. Within the core Plasmopara clade, all collections originating from the same host family except from Asteraceae and Geraniaceae formed monophyletic clades; however, higher-level phylogenetic relationships lack significant branch support. A sister group relationship of Pl. sphaerosperma with Bremia lactucae is highly supported. Within Bremia lactucae s. l., three distinct clades are evident, which only partly conform to the published host specificity groups. All species of the genera Basidiophora, Bremia, Paraperonospora and Plasmopara included in the present study were investigated for haustorial morphology, and all had ellipsoid to pyriform haustoria, which are regarded as a diagnostic synapomorphy of the whole clade. Aspects of coevolution and cospeciation within the downy mildew pathogens with ellipsoid to pyriform haustoria are briefly discussed.

  9. The Novel Oomycide Oxathiapiprolin Inhibits All Stages in the Asexual Life Cycle of Pseudoperonospora cubensis - Causal Agent of Cucurbit Downy Mildew

    PubMed Central

    Cohen, Yigal

    2015-01-01

    Oxathiapiprolin is a new oomycide (piperidinyl thiazole isoxazoline class) discovered by DuPont which controls diseases caused by oomycete plant pathogens. It binds in the oxysterol-binding protein domain of Oomycetes. Growth chambers studies with detached leaves and potted plants showed remarkable activity of oxathiapiprolin against Pseudoperonospora cubensis in cucurbits. The compound affected all stages in the asexual life cycle of the pathogen. It inhibited zoospore release, cystospore germination, lesion formation, lesion expansion, sporangiophore development and sporangial production. When applied to the foliage as a preventive spray no lesions developed due to inhibition of zoospore release and cystospore germination, and when applied curatively, at one or two days after inoculation, small restricted lesions developed but no sporulation occurred. When applied later to mature lesions, sporulation was strongly inhibited. Oxathiapiprolin suppressed sporulation of P. cubensis in naturally-infected leaves. It exhibited trans-laminar activity, translocated acropetaly from older to younger leaves, and moved from the root system to the foliage. Seed coating was highly effective in protecting the developed cucumber plants against downy mildew. UV microscopy observations made with cucumber leaves infected with P. cubensis revealed that inhibition of mycelium growth and sporulation induced by oxathiapiprolin was associated with callose encasement of the haustoria. PMID:26452052

  10. Disentangling Peronospora on Papaver: Phylogenetics, Taxonomy, Nomenclature and Host Range of Downy Mildew of Opium Poppy (Papaver somniferum) and Related Species

    PubMed Central

    Voglmayr, Hermann; Montes-Borrego, Miguel; Landa, Blanca B.

    2014-01-01

    Based on sequence data from ITS rDNA, cox1 and cox2, six Peronospora species are recognised as phylogenetically distinct on various Papaver species. The host ranges of the four already described species P. arborescens, P. argemones, P. cristata and P. meconopsidis are clarified. Based on sequence data and morphology, two new species, P. apula and P. somniferi, are described from Papaver apulum and P. somniferum, respectively. The second Peronospora species parasitizing Papaver somniferum, that was only recently recorded as Peronospora cristata from Tasmania, is shown to represent a distinct taxon, P. meconopsidis, originally described from Meconopsis cambrica. It is shown that P. meconopsidis on Papaver somniferum is also present and widespread in Europe and Asia, but has been overlooked due to confusion with P. somniferi and due to less prominent, localized disease symptoms. Oospores are reported for the first time for P. meconopsidis from Asian collections on Papaver somniferum. Morphological descriptions, illustrations and a key are provided for all described Peronospora species on Papaver. cox1 and cox2 sequence data are confirmed as equally good barcoding loci for reliable Peronospora species identification, whereas ITS rDNA does sometimes not resolve species boundaries. Molecular phylogenetic data reveal high host specificity of Peronospora on Papaver, which has the important phytopathological implication that wild Papaver spp. cannot play any role as primary inoculum source for downy mildew epidemics in cultivated opium poppy crops. PMID:24806292

  11. A Puf RNA-binding protein encoding gene PlM90 regulates the sexual and asexual life stages of the litchi downy blight pathogen Peronophythora litchii.

    PubMed

    Jiang, Liqun; Ye, Wenwu; Situ, Junjian; Chen, Yubin; Yang, Xinyu; Kong, Guanghui; Liu, Yaya; Tinashe, Runyanga J; Xi, Pinggen; Wang, Yuanchao; Jiang, Zide

    2017-01-01

    Sexual and asexual reproduction are two key processes in the pathogenic cycle of many filamentous pathogens. However in Peronophythora litchii, the causal pathogen for the litchi downy blight disease, critical regulator(s) of sexual or asexual differentiation has not been elucidated. In this study, we cloned a gene named PlM90 from P. litchii, which encodes a putative Puf RNA-binding protein. We found that PlM90 was highly expressed during asexual development, and much higher than that during sexual development, while relatively lower during cyst germination and plant infection. By polyethylene glycol (PEG)-mediated protoplast transformation, we generated three PlM90-silenced transformants and found a severely impaired ability in sexual spore production and a delay in stages of zoospore release and encystment. However, the pathogenicity of P. litchii was not affected by PlM90-silencing. Therefore we conclude that PlM90 specifically regulates the sexual and asexual differentiation of P. litchii. Copyright © 2016 Elsevier Inc. All rights reserved.

  12. [Chromosomal structure of the hybrids between Allium cepa L. and Allium fistulosum L. with relative resistance to downy mildew based on in situ hybridization].

    PubMed

    Budylin, M V; Kan, L Iu; Romanov, V S; Khrustaleva, L I

    2014-04-01

    Genomic in situ hybridization (GISH) was used for a chromosomal composition study of the later generations of interspecific hybrids between A. cepa L. and A. fistulosum L., which are relatively resistant to downy mildew (peronosporosis). GISH revealed that F2 hybrids, which did not produce seeds, were triploids (2n = 3x = 24) with 24 chromosomes and possessed in their compliments 16 chromosomes of A. fistulosum L. and eight chromosomes of A. cepa L. or eight chromosomes of A. fistulosum L. and 16 chromosomes of A. cepa L. The advanced F5 hybrid, which produced few seeds, was amphidiploid with 32 chromosomes. BC1F5 hybrid was triploid with eight chromosomes of A. fistulosum L. and 16 chromosomes of A. cepa L., which did not produce seeds. BC2 (BC1F5) plant was amphidiploid that possessed 4 recombinant chromosomes and produced few seeds. GISH results point to 2n-gametes formation in macro- and microsporogenesis of the hybrids. The mechanism of 2n-gametes formation and the possibility of apomixes events in the backcrossing progeny are discussed.

  13. Reducing copper use in the environment: The use of larixol and larixyl acetate to treat downy mildew caused by Plasmopara viticola in viticulture.

    PubMed

    Thuerig, Barbara; James, Emily E; Schärer, Hans-Jakob; Langat, Moses K; Mulholland, Dulcie A; Treutwein, Jonas; Kleeberg, Ina; Ludwig, Mathias; Jayarajah, Praveen; Giovannini, Oscar; Markellou, Emilia; Tamm, Lucius

    2017-09-14

    Plant extracts might provide sustainable alternatives to copper fungicides, which are still widely used despite their unfavourable ecotoxicological profile. Larch bark extract and its constituents, larixyl acetate and larixol, have been shown to be effective against grapevine downy mildew (Plasmopara viticola) under semi-controlled conditions. The aim of this study was to reduce the gap between innovation and the registration of a marketable product, namely to develop scalable extraction processes and to evaluate and optimize performance of larch extracts under different conditions. Toxicologically and technically acceptable solvents like ethanol were used to extract the active compounds larixyl acetate and larixol from bark in sufficient amounts and their combined concentration could be increased up to 39% by purification steps. The combined concentration of larixyl acetate and larixol from larch turpentine could be increased up to 66%. MIC100 against P. viticola in vitro (6-23 μg mL(-1) ) and EC50 in planta under semi-controlled conditions (0.2-0.4 mg mL(-1) ) were promising compared to other plant extracts. In vineyards, efficacies of larch extracts reached up to 68% in a stand-alone strategy and 84% in low-copper strategies. Larch extracts represent valid candidates for copper reduction in organic vineyards, and their development into a sustainable plant protection product might be feasible. This article is protected by copyright. All rights reserved.

  14. Disentangling Peronospora on Papaver: phylogenetics, taxonomy, nomenclature and host range of downy mildew of opium poppy (Papaver somniferum) and related species.

    PubMed

    Voglmayr, Hermann; Montes-Borrego, Miguel; Landa, Blanca B

    2014-01-01

    Based on sequence data from ITS rDNA, cox1 and cox2, six Peronospora species are recognised as phylogenetically distinct on various Papaver species. The host ranges of the four already described species P. arborescens, P. argemones, P. cristata and P. meconopsidis are clarified. Based on sequence data and morphology, two new species, P. apula and P. somniferi, are described from Papaver apulum and P. somniferum, respectively. The second Peronospora species parasitizing Papaver somniferum, that was only recently recorded as Peronospora cristata from Tasmania, is shown to represent a distinct taxon, P. meconopsidis, originally described from Meconopsis cambrica. It is shown that P. meconopsidis on Papaver somniferum is also present and widespread in Europe and Asia, but has been overlooked due to confusion with P. somniferi and due to less prominent, localized disease symptoms. Oospores are reported for the first time for P. meconopsidis from Asian collections on Papaver somniferum. Morphological descriptions, illustrations and a key are provided for all described Peronospora species on Papaver. cox1 and cox2 sequence data are confirmed as equally good barcoding loci for reliable Peronospora species identification, whereas ITS rDNA does sometimes not resolve species boundaries. Molecular phylogenetic data reveal high host specificity of Peronospora on Papaver, which has the important phytopathological implication that wild Papaver spp. cannot play any role as primary inoculum source for downy mildew epidemics in cultivated opium poppy crops.

  15. Host Jumps and Radiation, Not Co‐Divergence Drives Diversification of Obligate Pathogens. A Case Study in Downy Mildews and Asteraceae

    PubMed Central

    Choi, Young-Joon; Thines, Marco

    2015-01-01

    Even though the microevolution of plant hosts and pathogens has been intensely studied, knowledge regarding macro-evolutionary patterns is limited. Having the highest species diversity and host-specificity among Oomycetes, downy mildews are a useful a model for investigating long-term host-pathogen coevolution. We show that phylogenies of Bremia and Asteraceae are significantly congruent. The accepted hypothesis is that pathogens have diverged contemporarily with their hosts. But maximum clade age estimation and sequence divergence comparison reveal that congruence is not due to long-term coevolution but rather due to host-shift driven speciation (pseudo-cospeciation). This pattern results from parasite radiation in related hosts, long after radiation and speciation of the hosts. As large host shifts free pathogens from hosts with effector triggered immunity subsequent radiation and diversification in related hosts with similar innate immunity may follow, resulting in a pattern mimicking true co-divergence, which is probably limited to the terminal nodes in many pathogen groups. PMID:26230508

  16. Development and Application of ANN Model for Worker Assignment into Virtual Cells of Large Sized Configurations

    NASA Astrophysics Data System (ADS)

    Murali, R. V.; Puri, A. B.; Fathi, Khalid

    2010-10-01

    This paper presents an extended version of study already undertaken on development of an artificial neural networks (ANNs) model for assigning workforce into virtual cells under virtual cellular manufacturing systems (VCMS) environments. Previously, the same authors have introduced this concept and applied it to virtual cells of two-cell configuration and the results demonstrated that ANNs could be a worth applying tool for carrying out workforce assignments. In this attempt, three-cell configurations problems are considered for worker assignment task. Virtual cells are formed under dual resource constraint (DRC) context in which the number of available workers is less than the total number of machines available. Since worker assignment tasks are quite non-linear and highly dynamic in nature under varying inputs & conditions and, in parallel, ANNs have the ability to model complex relationships between inputs and outputs and find similar patterns effectively, an attempt was earlier made to employ ANNs into the above task. In this paper, the multilayered perceptron with feed forward (MLP-FF) neural network model has been reused for worker assignment tasks of three-cell configurations under DRC context and its performance at different time periods has been analyzed. The previously proposed worker assignment model has been reconfigured and cell formation solutions available for three-cell configuration in the literature are used in combination to generate datasets for training ANNs framework. Finally, results of the study have been presented and discussed.

  17. Development and Application of ANN Model for Worker Assignment into Virtual Cells of Large Sized Configurations

    SciTech Connect

    Murali, R. V.; Fathi, Khalid; Puri, A. B.

    2010-10-26

    This paper presents an extended version of study already undertaken on development of an artificial neural networks (ANNs) model for assigning workforce into virtual cells under virtual cellular manufacturing systems (VCMS) environments. Previously, the same authors have introduced this concept and applied it to virtual cells of two-cell configuration and the results demonstrated that ANNs could be a worth applying tool for carrying out workforce assignments. In this attempt, three-cell configurations problems are considered for worker assignment task. Virtual cells are formed under dual resource constraint (DRC) context in which the number of available workers is less than the total number of machines available. Since worker assignment tasks are quite non-linear and highly dynamic in nature under varying inputs and conditions and, in parallel, ANNs have the ability to model complex relationships between inputs and outputs and find similar patterns effectively, an attempt was earlier made to employ ANNs into the above task. In this paper, the multilayered perceptron with feed forward (MLP-FF) neural network model has been reused for worker assignment tasks of three-cell configurations under DRC context and its performance at different time periods has been analyzed. The previously proposed worker assignment model has been reconfigured and cell formation solutions available for three-cell configuration in the literature are used in combination to generate datasets for training ANNs framework. Finally, results of the study have been presented and discussed.

  18. Identification of drought in Dhalai river watershed using MCDM and ANN models

    NASA Astrophysics Data System (ADS)

    Aher, Sainath; Shinde, Sambhaji; Guha, Shantamoy; Majumder, Mrinmoy

    2017-03-01

    An innovative approach for drought identification is developed using Multi-Criteria Decision Making (MCDM) and Artificial Neural Network (ANN) models from surveyed drought parameter data around the Dhalai river watershed in Tripura hinterlands, India. Total eight drought parameters, i.e., precipitation, soil moisture, evapotranspiration, vegetation canopy, cropping pattern, temperature, cultivated land, and groundwater level were obtained from expert, literature and cultivator survey. Then, the Analytic Hierarchy Process (AHP) and Analytic Network Process (ANP) were used for weighting of parameters and Drought Index Identification (DII). Field data of weighted parameters in the meso scale Dhalai River watershed were collected and used to train the ANN model. The developed ANN model was used in the same watershed for identification of drought. Results indicate that the Limited-Memory Quasi-Newton algorithm was better than the commonly used training method. Results obtained from the ANN model shows the drought index developed from the study area ranges from 0.32 to 0.72. Overall analysis revealed that, with appropriate training, the ANN model can be used in the areas where the model is calibrated, or other areas where the range of input parameters is similar to the calibrated region for drought identification.

  19. Olivine in Martian Meteorite Allan Hills 84001: Evidence for a High-Temperature Origin and Implications for Signs of Life

    NASA Technical Reports Server (NTRS)

    Shearer, C. K.; Leshin, L. A.; Adcock, C. T.

    1999-01-01

    Olivine from Martian meteorite Allan Hills (ALH) 84001 occurs as clusters within orthopyroxene adjacent to fractures containing disrupted carbonate globules and feldspathic shock glass. The inclusions are irregular in shape and range in size from approx. 40 microns to submicrometer. Some of the inclusions are elongate and boudinage-like. The olivine grains are in sharp contact with the enclosing orthopyroxene and often contain small inclusions of chromite The olivine exhibits a very limited range of composition from Fo(sub 65) to Fo(sub 66) (n = 25). The delta(sup 18)O values of the olivine and orthopyroxene analyzed by ion microprobe range from +4.3 to +5.3% and are indistinguishable from each other within analytical uncertainty. The mineral chemistries, O-isotopic data, and textural relationships indicate that the olivine inclusions were produced at a temperature greater than 800 C. It is unlikely that the olivines formed during the same event that gave rise to the carbonates in ALH 84001, which have more elevated and variable delta(sup 18)O values, and were probably formed from fluids that were not in isotopic equilibrium with the orthopyroxene or olivine The reactions most likely instrumental in the formation of olivine could be either the dehydration of hydrous silicates that formed during carbonate precipitation or the reduction of orthopyroxene and spinel If the olivine was formed by either reaction during a postcarbonate beating event, the implications are profound with regards to the interpretations of McKay et al. Due to the low diffusion rates in carbonates, this rapid, high-temperature event would have resulted in the preservation of the fine-scale carbonate zoning' while partially devolatilizing select carbonate compositions on a submicrometer scale. This may have resulted in the formation of the minute magnetite grains that McKay et al attributed to biogenic activity.

  20. Olivine in Martian Meteorite Allan Hills 84001: Evidence for a High-Temperature Origin and Implications for Signs of Life

    NASA Technical Reports Server (NTRS)

    Shearer, C. K.; Leshin, L. A.; Adcock, C. T.

    1999-01-01

    Olivine from Martian meteorite Allan Hills (ALH) 84001 occurs as clusters within orthopyroxene adjacent to fractures containing disrupted carbonate globules and feldspathic shock glass. The inclusions are irregular in shape and range in size from approx. 40 microns to submicrometer. Some of the inclusions are elongate and boudinage-like. The olivine grains are in sharp contact with the enclosing orthopyroxene and often contain small inclusions of chromite The olivine exhibits a very limited range of composition from Fo(sub 65) to Fo(sub 66) (n = 25). The delta(sup 18)O values of the olivine and orthopyroxene analyzed by ion microprobe range from +4.3 to +5.3% and are indistinguishable from each other within analytical uncertainty. The mineral chemistries, O-isotopic data, and textural relationships indicate that the olivine inclusions were produced at a temperature greater than 800 C. It is unlikely that the olivines formed during the same event that gave rise to the carbonates in ALH 84001, which have more elevated and variable delta(sup 18)O values, and were probably formed from fluids that were not in isotopic equilibrium with the orthopyroxene or olivine The reactions most likely instrumental in the formation of olivine could be either the dehydration of hydrous silicates that formed during carbonate precipitation or the reduction of orthopyroxene and spinel If the olivine was formed by either reaction during a postcarbonate beating event, the implications are profound with regards to the interpretations of McKay et al. Due to the low diffusion rates in carbonates, this rapid, high-temperature event would have resulted in the preservation of the fine-scale carbonate zoning' while partially devolatilizing select carbonate compositions on a submicrometer scale. This may have resulted in the formation of the minute magnetite grains that McKay et al attributed to biogenic activity.

  1. An Ultra-High Resolution Investigation of 1 Ma Old Ice from Allan Hills Blue Ice Area, Antarctica

    NASA Astrophysics Data System (ADS)

    Clifford, H.; Mayewski, P. A.; Higgins, J. A.; Introne, D.; Kurbatov, A.; Sneed, S. B.; Spaulding, N. E.; Yan, Y.

    2016-12-01

    Here we present continuous sampling data from the oldest known ice recovered from a 125.64 -126.31 m depth interval at the Allan Hills Blue Ice area in Antarctica during 2010-2011 field season. The ca. 1-Ma old ice is investigated with our unique sampling technique, laser ablation-inductively coupled plasma-mass spectrometer (LA-ICP-MS) and complimented by traditional glaciochemical measurements. The LA-ICP-MS achieves a realistic measure of variability of select chemical species from an ultra-high resolution (as low as 121 mm), non-destructive sampling method. Elements are measured using single-element or multi-element line scans, producing a continuous LA profile along the length of the ice sample. Multiple single-element passes for Ca, Na and Fe along with a multi-element pass for Na, Al and Mg were ablated and analyzed along parallel tracks down the ice core. Additionally, we further examine the 1-Ma old ice using novel very-high resolution (3 mm) stable water ∂18O and ∂D sampling system Our results show evidence of environmental signals preserved within the 1-Ma old ice. The signals from the stable water isotope measurements and ablated chemical elements, previously established as a proxy for marine and continental (dust) air-mass sources, show fluctuations and variability that are consistent with existing ice core based paleoclimate records. The extensive data collected by the combination of these techniques may enable us to provide a snapshot of climate that operated before transition from 40ka to 100ka world. Research was funded by Division of Polar Programs NSF

  2. Mapping brain circuits of reward and motivation: In the footsteps of Ann Kelley

    PubMed Central

    Richard, Jocelyn M.; Castro, Daniel C.; DiFeliceantonio, Alexandra G.; Robinson, Mike J.F.; Berridge, Kent C.

    2013-01-01

    Ann Kelley was a scientific pioneer in reward neuroscience. Her many notable discoveries included demonstrations of accumbens/striatal circuitry roles in eating behavior and in food reward, explorations of limbic interactions with hypothalamic regulatory circuits, and additional interactions of motivation circuits with learning functions. Ann Kelley's accomplishments inspired other researchers to follow in her footsteps, including our own laboratory group. Here we describe results from several lines of our research that sprang in part from earlier findings by Kelley and colleagues. We describe hedonic hotspots for generating intense pleasure `liking', separate identities of `wanting' versus `liking' systems, a novel role for dorsal neostriatum in generating motivation to eat, a limbic keyboard mechanism in nucleus accumbens for generating intense desire versus intense dread, and dynamic limbic transformations of learned memories into motivation. We describe how origins for each of these themes can be traced to fundamental contributions by Ann Kelley. PMID:23261404

  3. Modeling and forecasting of KLCI weekly return using WT-ANN integrated model

    NASA Astrophysics Data System (ADS)

    Liew, Wei-Thong; Liong, Choong-Yeun; Hussain, Saiful Izzuan; Isa, Zaidi

    2013-04-01

    The forecasting of weekly return is one of the most challenging tasks in investment since the time series are volatile and non-stationary. In this study, an integrated model of wavelet transform and artificial neural network, WT-ANN is studied for modeling and forecasting of KLCI weekly return. First, the WT is applied to decompose the weekly return time series in order to eliminate noise. Then, a mathematical model of the time series is constructed using the ANN. The performance of the suggested model will be evaluated by root mean squared error (RMSE), mean absolute error (MAE), mean absolute percentage error (MAPE). The result shows that the WT-ANN model can be considered as a feasible and powerful model for time series modeling and prediction.

  4. Design of Microstrip Lange Coupler Based on Em-Ann Model

    NASA Astrophysics Data System (ADS)

    Yang, Ziqiang; Yang, Tao; Liu, Yu

    2006-10-01

    Electromagnetically trained artificial neural network (EM-ANN) model for microstrip Lange Coupler is presented. Full-wave EM analysis software is employed to characterize the Lange Coupler. The EM-ANN model is then designed using physical parameters as inputs and S-parameters as outputs. Once the EM-ANN model is trained, it can be used to find the optimal physical structure of the Lange Coupler for a given application using optimization technique. A Ka-band microstrip Lange Coupler is designed by this method. The simulated results of the Lange Coupler show that the insert loss is better than -3.64 dB; the amplitude balance is less than 0.55 dB and the phase balance is less than 0.52°from the 90°phase difference over the 30 to 40 GHz frequency range.

  5. ANN-Assisted Planning of Conjunctive Use of Canal and Ground Water in Canal Commands

    NASA Astrophysics Data System (ADS)

    Kashyap, Deepak; Ghosh, Susmita

    2010-05-01

    Presented herein is an algorithm for ANN-assisted planning of the optimal cropping pattern and the associated groundwater development in a canal command area, followed by an illustration. The planning in the illustration ensures the maximization of the cropped area subject to the constraint of limiting the maximum water table depth to an acceptable limit. A multilayer feed forward ANN model, relating the maximum water table depth to the crop areas, is trained using back-propagation learning algorithm. The data invoked for the training comprise an array of the cropping patterns, and the corresponding maximum water table depths. These data are generated through a pre-calibrated numerical model of groundwater flow. Subsequently, the trained ANN model is linked to a GA based optimizer for arriving at the optimal cropping pattern and the associated pumping pattern.

  6. NDT identification of a crack using ANNs with stochastic gradient descent

    SciTech Connect

    Arkadan, A.A.; Chen, Y.; Subramaniam, S.; Hoole, S.R.H.

    1995-05-01

    Nondestructive testing (NDT) is used to identify the anomalies and defects in inaccessible locations. Various techniques of optimization are used in NDT. In this work, the Artificial Neural Networks (ANNs) are applied with NDT to identify a crack in a conducting medium. In general, deterministic techniques are used with the back propagation algorithm (BP) to train the neural networks. The ANNs which are trained by a deterministic method have a tendency to get trapped in local minima. In this paper a stochastic version of the gradient descent is applied to train the ANNs and it overcomes the difficulties of local minima caused by the sinusoidal fields. The stochastic version used in this approach is based on the Metropolis algorithm which is frequently used in the simulated annealing.

  7. Estimating Parameters of Delaminations in GRP Pipes Using Thermal NDE and ANN

    SciTech Connect

    Vijayaraghavan, G. K.; Ramachandran, K. P.; Muruganandam, A.; Govindarajan, L.; Majumder, M. C.

    2010-10-26

    Thermographic Non-Destructive Evaluation (TNDE) is one of the techniques that have been widely used over the decades to evaluate the integrity of structures. To meet the increased demand for robust and effective inspection in complex TNDE tasks, Artificial Neural Networks (ANNs) have been recently deployed in many problems. The aim of the paper is to adopt an inverse technique using ANNs in the field of TNDE to estimate various parameters of delamination in Glass Reinforced Polymer (GRP) pipes by supplying thermal contrast evolution data as input. A Radial Basis Network (RBN) is employed with 80 input and 3 output neurons. The estimation capability of the network was evaluated with the data obtained from numerical simulations. The overall absolute errors show that the estimation capability of ANN is good.

  8. Chromatic analysis of burn scar based on ANN by using photoelectrical technology

    NASA Astrophysics Data System (ADS)

    Wan, Baikun; Qi, Hongzhi; Ming, Dong; Zhang, Mingjian; Wang, Qifang

    2005-01-01

    In this paper a novel method for the chromatic analysis of burn scar is proposed. The aim of the algorithm is to evaluate the curative effect and set up the treatment plan pertinently, because the scar color is an impersonal parameter reflects the degree of scar hypertrophy. The method is based on artificial neural network (ANN) by using photoelectrical technique, and composed of three main parts: firstly capture the digital color images of the burn scar using CCD camera, then change the RGB color data of the burn scar into that of HSB color space and emend it using ANN, lastly judge the degree of burn scar hypertrophy by chromatic analysis using ANN again. The experimental results were good conformed to the degrees of scar hypertrophy given by clinical evaluations. It suggests that the chromatic analysis technique of the burn scar is valuable for further study and apply to the clinical engineering.

  9. Estimating Parameters of Delaminations in GRP Pipes Using Thermal NDE and ANN

    NASA Astrophysics Data System (ADS)

    Vijayaraghavan, G. K.; Majumder, M. C.; Ramachandran, K. P.; Muruganandam, A.; Govindarajan, L.

    2010-10-01

    Thermographic Non-Destructive Evaluation (TNDE) is one of the techniques that have been widely used over the decades to evaluate the integrity of structures. To meet the increased demand for robust and effective inspection in complex TNDE tasks, Artificial Neural Networks (ANNs) have been recently deployed in many problems. The aim of the paper is to adopt an inverse technique using ANNs in the field of TNDE to estimate various parameters of delamination in Glass Reinforced Polymer (GRP) pipes by supplying thermal contrast evolution data as input. A Radial Basis Network (RBN) is employed with 80 input and 3 output neurons. The estimation capability of the network was evaluated with the data obtained from numerical simulations. The overall absolute errors show that the estimation capability of ANN is good.

  10. Mapping brain circuits of reward and motivation: in the footsteps of Ann Kelley.

    PubMed

    Richard, Jocelyn M; Castro, Daniel C; Difeliceantonio, Alexandra G; Robinson, Mike J F; Berridge, Kent C

    2013-11-01

    Ann Kelley was a scientific pioneer in reward neuroscience. Her many notable discoveries included demonstrations of accumbens/striatal circuitry roles in eating behavior and in food reward, explorations of limbic interactions with hypothalamic regulatory circuits, and additional interactions of motivation circuits with learning functions. Ann Kelley's accomplishments inspired other researchers to follow in her footsteps, including our own laboratory group. Here we describe results from several lines of our research that sprang in part from earlier findings by Kelley and colleagues. We describe hedonic hotspots for generating intense pleasure 'liking', separate identities of 'wanting' versus 'liking' systems, a novel role for dorsal neostriatum in generating motivation to eat, a limbic keyboard mechanism in nucleus accumbens for generating intense desire versus intense dread, and dynamic limbic transformations of learned memories into motivation. We describe how origins for each of these themes can be traced to fundamental contributions by Ann Kelley. Copyright © 2013 Elsevier Ltd. All rights reserved.

  11. PkANN: Non-Linear Matter Power Spectrum Interpolation through Artificial Neural Networks

    NASA Astrophysics Data System (ADS)

    Agarwal, Shankar

    We investigate the interpolation of power spectra of matter fluctuations using artificial neural networks (ANNs). We present a new approach to confront small-scale non-linearities in the matter power spectrum. This ever-present and pernicious uncertainty is often the Achilles' heel in cosmological studies and must be reduced if we are to see the advent of precision cosmology in the late-time Universe. We detail how an accurate interpolation of the matter power spectrum is achievable with only a sparsely sampled grid of cosmological parameters. We show that an optimally trained ANN, when presented with a set of cosmological parameters (Omh2 , Obh2, ns, w0, sigma8, sum mnu and z), can provide a worst-case error ≤ 1 per cent (for redshift z ≤ 2) fit to the non-linear matter power spectrum deduced through large-scale N-body simulations, for modes up to k ≤ 0.9 hMpc-1 . Our power spectrum interpolator, which we label 'PkANN', is designed to simulate a range of cosmological models including massive neutrinos and dark energy equation of state w 0 ≠ -1. PkANN is accurate in the quasi-non-linear regime (0.1 hMpc-1 ≤ k ≤ 0.9 hMpc -1) over the entire parameter space and marks a significant improvement over some of the current power spectrum calculators. The response of the power spectrum to variations in the cosmological parameters is explored using PkANN. Using a compilation of existing peculiar velocity surveys, we investigate the cosmic Mach number statistic and show that PkANN not only successfully accounts for the non-linear motions on small scales, but also, unlike N-body simulations which are computationally expensive and/or infeasible, it can be an extremely quick and reliable tool in interpreting cosmological observations and testing theories of structure-formation.

  12. Cotton AnnGh3 encoding an annexin protein is preferentially expressed in fibers and promotes initiation and elongation of leaf trichomes in transgenic Arabidopsis.

    PubMed

    Li, Bing; Li, Deng-Di; Zhang, Jie; Xia, Hui; Wang, Xiu-Lan; Li, Ying; Li, Xue-Bao

    2013-10-01

    The annexins are a multifamily of calcium-regulated phospholipid-binding proteins. To investigate the roles of annexins in fiber development, four genes encoding putative annexin proteins were isolated from cotton (Gossypium hirsutum) and designated AnnGh3, AnnGh4, AnnGh5, and AnnGh6. Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) results indicated that AnnGh3, AnnGh4, and AnnGh5 were preferentially expressed in fibers, while the transcripts of AnnGh6 were predominantly accumulated in roots. During fiber development, the transcripts of AnnGh3/4/5 genes were mainly accumulated in rapidly elongating fibers. With fiber cells further developed, their expression activity was dramatically declined to a relatively low level. In situ hybridization results indicated that AnnGh3 and AnnGh5 were expressed in initiating fiber cells (0-2 DPA). Additionally, their expression in fibers was also regulated by phytohormones and [Ca(2+)]. Subcellular localization analysis discovered that AnnGh3 protein was localized in the cytoplasm. Overexpression of AnnGh3 in Arabidopsis resulted in a significant increase in trichome density and length on leaves of the transgenic plants, suggesting that AnnGh3 may be involved in fiber cell initiation and elongation of cotton.

  13. Transgenic Pearl Millet Male Fertility Restorer Line (ICMP451) and Hybrid (ICMH451) Expressing Brassica juncea Nonexpressor of Pathogenesis Related Genes 1 (BjNPR1) Exhibit Resistance to Downy Mildew Disease

    PubMed Central

    Khareedu, Venkateswara Rao; Vudem, Dashavantha Reddy

    2014-01-01

    Brassica juncea Nonexpressor of pathogenesis-related genes 1 (BjNPR1) has been introduced into pearl millet male fertility restorer line ICMP451 by Agrobacterium tumefaciens-mediated genetic transformation. Transgenic pearl millet plants were regenerated from the phosphinothricin-resistant calli obtained after co-cultivation with A. tumefaciens strain LBA4404 harbouring Ti plasmid pSB111-bar-BjNPR1. Molecular analyses confirmed the stable integration and expression of BjNPR1 in transgenic pearl millet lines. Transgenes BjNPR1 and bar were stably inherited and disclosed co-segregation in subsequent generations in a Mendelian fashion. Transgenic pearl millet hybrid ICMH451-BjNPR1 was developed by crossing male-sterile line 81A X homozygous transgenic line ICMP451-BjNPR1. T3 and T4 homozygous lines of ICMP451-BjNPR1 and hybrid ICMH451-BjNPR1 exhibited resistance to three strains of downy mildew pathogen, while the untransformed ICMP451 and the isogenic hybrid ICMH451 plants were found susceptible. Following infection with S. graminicola, differential expression of systemic acquired resistance pathway genes, UDP-glucose salicylic acid glucosyl transferase and pathogenesis related gene 1 was observed in transgenic ICMP451-BjNPR1 and untransformed plants indicating the activation of systemic acquired resistance pathway contributing to the transgene-mediated resistance against downy mildew. The transgenic pearl millet expressing BjNPR1 showed resistance to multiple strains of S. graminicola and, as such, seems promising for the development of durable downy mildew resistant hybrids. PMID:24603762

  14. Prediction of scour below submerged pipeline crossing a river using ANN.

    PubMed

    Azamathulla, H M; Zakaria, Nor Azazi

    2011-01-01

    The process involved in the local scour below pipelines is so complex that it makes it difficult to establish a general empirical model to provide accurate estimation for scour. This paper describes the use of artificial neural networks (ANN) to estimate the pipeline scour depth. The data sets of laboratory measurements were collected from published works and used to train the network or evolve the program. The developed networks were validated by using the observations that were not involved in training. The performance of ANN was found to be more effective when compared with the results of regression equations in predicting the scour depth around pipelines.

  15. Thermoluminescence survey of 12 meteorites collected by the European 1988 Antarctic meteorite expedition to Allan Hills and the importance of acid washing for thermoluminescence sensitivity measurements

    NASA Technical Reports Server (NTRS)

    Benoit, P. H.; Sears, H.; Sears, D. W. G.

    1991-01-01

    Natural and induced thermoluminescence (TL) data are reported for 12 meteorites recovered from the Allan Hills region of Antarctica by the European field party during the 1988/1989 field season. The samples include one with extremely high natural TL, ALH88035, suggestive of exposure to unusually high radiation doses (i.e., low degrees of shielding), and one, ALH88034, whose low natural TL suggests reheating within the last 100,000 years. The remainder have natural TL values suggestive of terrestrial ages similar to those of other meteorites from Allan Hills. ALH88015 (L6) has induced TL data suggestive of intense shock. TL sensitivities of these meteorites are generally lower than observed falls of their petrologic types, as is also observed for Antarctic meteorites in general. Acid-washing experiments indicate that this is solely the result of terrestrial weathering rather than a nonterrestrial Antarctic-non-Antarctic difference. However, other TL parameters, such as natural TL and induced peak temperature-width, are unchanged by acid washing and are sensitive indicators of a meteorite's metamorphic and recent radiation history.

  16. Thermoluminescence survey of 12 meteorites collected by the European 1988 Antarctic meteorite expedition to Allan Hills and the importance of acid washing for thermoluminescence sensitivity measurements

    NASA Technical Reports Server (NTRS)

    Benoit, P. H.; Sears, H.; Sears, D. W. G.

    1991-01-01

    Natural and induced thermoluminescence (TL) data are reported for 12 meteorites recovered from the Allan Hills region of Antarctica by the European field party during the 1988/1989 field season. The samples include one with extremely high natural TL, ALH88035, suggestive of exposure to unusually high radiation doses (i.e., low degrees of shielding), and one, ALH88034, whose low natural TL suggests reheating within the last 100,000 years. The remainder have natural TL values suggestive of terrestrial ages similar to those of other meteorites from Allan Hills. ALH88015 (L6) has induced TL data suggestive of intense shock. TL sensitivities of these meteorites are generally lower than observed falls of their petrologic types, as is also observed for Antarctic meteorites in general. Acid-washing experiments indicate that this is solely the result of terrestrial weathering rather than a nonterrestrial Antarctic-non-Antarctic difference. However, other TL parameters, such as natural TL and induced peak temperature-width, are unchanged by acid washing and are sensitive indicators of a meteorite's metamorphic and recent radiation history.

  17. Understanding Anne Frank's "The Diary of a Young Girl": A Student Casebook to Issues, Sources, and Historical Documents.

    ERIC Educational Resources Information Center

    Kopf, Hedda Rosner

    Anne Frank's "The Diary of a Young Girl" is the most widely read text about the Holocaust, yet it represents only one example of the tragic consequences of the Nazi policy to eliminate the Jews of Europe during World War II. This casebook enriches Anne Frank's remarkable personal account with a variety of historical documents that…

  18. Understanding Anne Frank's "The Diary of a Young Girl": A Student Casebook to Issues, Sources, and Historical Documents.

    ERIC Educational Resources Information Center

    Kopf, Hedda Rosner

    Anne Frank's "The Diary of a Young Girl" is the most widely read text about the Holocaust, yet it represents only one example of the tragic consequences of the Nazi policy to eliminate the Jews of Europe during World War II. This casebook enriches Anne Frank's remarkable personal account with a variety of historical documents that…

  19. Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogen Plasmopara viticola.

    PubMed

    Fontaine, Michael C; Austerlitz, Fréderic; Giraud, Tatiana; Labbé, Frédéric; Papura, Daciana; Richard-Cervera, Sylvie; Delmotte, François

    2013-05-01

    Biologic invasions can have important ecological, economic and social consequences, particularly when they involve the introduction and spread of plant invasive pathogens, as they can threaten natural ecosystems and jeopardize the production of human food. Examples include the grapevine downy mildew, caused by the oomycete Plasmopara viticola, an invasive species native to North America, introduced into Europe in the 1870s. We investigated the introduction and spread of this invasive pathogen, by analysing its genetic structure and diversity in a large sample from European vineyards. Populations of P. viticola across Europe displayed little genetic diversity, consistent with the occurrence of a bottleneck at the time of introduction. Bayesian coalescent analyses revealed a clear population expansion signal in the genetic data. We detected a weak, but significant, continental-wide population structure, with two geographically and genetically distinct clusters in Western and Eastern European vineyards. Approximate Bayesian computation, analyses of clines of genetic diversity and of isolation-by-distance patterns provided evidence for a wave of colonization moving in an easterly direction across Europe. This is consistent with historical reports, first mentioning the introduction of the disease in Bordeaux vineyards (France) and sub-sequently documenting its rapid spread across Europe. This initial introduction in the west was probably followed by a 'leap-frog' event into Eastern Europe, leading to the formation of the two genetic clusters we detected. This study shows that recent population genetics methods within the Bayesian and coalescence frameworks are extremely powerful for increasing our understanding of pathogen population dynamics and invasion histories.

  20. General and species-specific transcriptional responses to downy mildew infection in a susceptible (Vitis vinifera) and a resistant (V. riparia) grapevine species

    PubMed Central

    2010-01-01

    Background Downy mildew is a destructive grapevine disease caused by Plasmopara viticola (Berk. and Curt.) Berl. and de Toni, which can only be controlled by intensive fungicide treatments. Natural sources of resistance from wild grapevine (Vitis) species are used in conventional breeding approaches, but the signals and effectors involved in resistance in this important crop species are not well understood. Results Early transcriptional changes associated with P. viticola infection in susceptible V. vinifera and resistant V. riparia plants were analyzed using the Combimatrix microarray platform. Transcript levels were measured 12 and 24 h post-inoculation, reflecting the time points immediately preceding the onset of resistance in V. riparia, as determined by microscopic analysis. Our data indicate that resistance in V. riparia is induced after infection, and is not based on differences in basal gene expression between the two species. The strong and rapid transcriptional reprogramming involves the induction of pathogenesis-related proteins and enzymes required for the synthesis of phenylpropanoid-derived compounds, many of which are also induced, albeit to a lesser extent, in V. vinifera. More interestingly, resistance in V. riparia also involves the specific modulation of numerous transcripts encoding components of signal transduction cascades, hypersensitive reaction markers and genes involved in jasmonate biosynthesis. The limited transcriptional modulation in V. vinifera represents a weak attempted defense response rather than the activation of compatibility-specific pathways. Conclusions Several candidate resistance genes were identified that could be exploited in future biotechnological approaches to increase disease resistance in susceptible grapevine species. Measurements of jasmonic acid and methyl jasmonate in infected leaves suggest that this hormone may also be involved in V. riparia resistance to P. viticola. PMID:20167053

  1. A nitrogen and argon stable isotope study of Allan Hills 84001: implications for the evolution of the Martian atmosphere.

    PubMed

    Grady, M M; Wright, I P; Pillinger, C T

    1998-07-01

    The abundances and isotopic compositions of N and Ar have been measured by stepped combustion of the Allan Hills 84001 (ALH 84001) Martian orthopyroxenite. Material described as shocked is N-poor ([N] approximately 0.34 ppm; delta 15N approximately +23%); although during stepped combustion, 15N-enriched N (delta 15N approximately +143%) is released in a narrow temperature interval between 700 degrees C and 800 degrees C (along with 13C-enriched C (delta 13C approximately +19%) and 40Ar). Cosmogenic species are found to be negligible at this temperature; thus, the isotopically heavy component is identified, in part, as Martian atmospheric gas trapped relatively recently in the history of ALH84001. The N and Ar data show that ALH84001 contains species from the Martian lithosphere, a component interpreted as ancient trapped atmosphere (in addition to the modern atmospheric species), and excess 40Ar from K decay. Deconvolution of radiogenic 40Ar from other Ar components, on the basis of end-member 36Ar/14N and 40Ar/36Ar ratios, has enabled calculation of a K-Ar age for ALH 84001 as 3.5-4.6 Ga, depending on assumed K abundance. If the component believed to be Martian palaeoatmosphere was introduced to ALH 84001 at the time the K-Ar age was set, then the composition of the atmosphere at this time is constrained to: delta 15N > or = +200%, 40Ar/36Ar < or = 3000 and 36Ar/14N > or = 17 x 10(-5). In terms of the petrogenetic history of the meteorite, ALH 84001 crystallised soon after differentiation of the planet, may have been shocked and thermally metamorphosed in an early period of bombardment, and then subjected to a second event. This later process did not reset the K-Ar system but perhaps was responsible for introducing (recent) atmospheric gases into ALH 84001; and it might mark the time at which ALH 84001 suffered fluid alteration resulting in the formation of the plagioclase and carbonate mineral assemblages.

  2. Extreme metamorphism in a firn core from the Allan Hills, Antarctica, as an analogue for glacial conditions

    NASA Astrophysics Data System (ADS)

    Dadic, Ruzica; Schneebeli, Martin; Bertler, Nancy; Schwikowski, Margit; Matzl, Margret

    2015-04-01

    Understanding processes in near-zero accumulation areas can help to better understand the ranges of isotopic composition in ice cores, particularly during ice ages, when accumulation rates were lower than today. Snow metamorphism is a primary driver of the transition from snow to ice and can be accompanied by altered isotopic compositions and chemical species concentration. High degree snow metamorphism, which results in major structural changes, is little-studied but has been identified in certain places in Antarctica. Here we report on a 5-m firn core collected adjacent to a blue-ice field in the Allan Hills, Antarctica. We determined the physical properties of the snow using computer tomography (microCT) and measured the isotopic composition of δD and δ18O, as well as 210Pb activity. The core shows a high degree of snow metamorphism and an exponential decrease in specific surface area (SSA), but no clear densification, with depth. The micro-CT measurements show a homogenous and stable structure throughout the entire core, with obvious erosion features in the near-surface, where high-resolution data is available. The observed firn structure is likely caused by a combination of unique depositional and post-depositional processes. The defining depositional process is the impact deposition under high winds and with a high initial density. The defining post-depositional processes are a) increased moisture transport due to forced ventilation and high winds and b) decades of temperature-gradient driven metamorphic growth in the near surface due to prolonged exposure to seasonal temperature cycling. Both post-processes are enhanced in low accumulation regions where snow stays close to surface for a long time. We observe an irregular signal in δD and δ18O that does not follow the stratigraphic sequence. The isotopic signal is likely caused by the same post-depositional processes that are responsible for the firn structure, and that are driven by local climate

  3. Assessment of spatial distribution of soil heavy metals using ANN-GA, MSLR and satellite imagery.

    PubMed

    Naderi, Arman; Delavar, Mohammad Amir; Kaboudin, Babak; Askari, Mohammad Sadegh

    2017-05-01

    This study aims to assess and compare heavy metal distribution models developed using stepwise multiple linear regression (MSLR) and neural network-genetic algorithm model (ANN-GA) based on satellite imagery. The source identification of heavy metals was also explored using local Moran index. Soil samples (n = 300) were collected based on a grid and pH, organic matter, clay, iron oxide contents cadmium (Cd), lead (Pb) and zinc (Zn) concentrations were determined for each sample. Visible/near-infrared reflectance (VNIR) within the electromagnetic ranges of satellite imagery was applied to estimate heavy metal concentrations in the soil using MSLR and ANN-GA models. The models were evaluated and ANN-GA model demonstrated higher accuracy, and the autocorrelation results showed higher significant clusters of heavy metals around the industrial zone. The higher concentration of Cd, Pb and Zn was noted under industrial lands and irrigation farming in comparison to barren and dryland farming. Accumulation of industrial wastes in roads and streams was identified as main sources of pollution, and the concentration of soil heavy metals was reduced by increasing the distance from these sources. In comparison to MLSR, ANN-GA provided a more accurate indirect assessment of heavy metal concentrations in highly polluted soils. The clustering analysis provided reliable information about the spatial distribution of soil heavy metals and their sources.

  4. 77 FR 34991 - Notice of Inventory Completion: Museum of Anthropology, University of Michigan, Ann Arbor, MI...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-12

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF THE INTERIOR National Park Service Notice of Inventory Completion: Museum of Anthropology, University of Michigan, Ann Arbor, MI; Correction AGENCY: National Park Service, Interior. ACTION: Notice; correction. Notice is...

  5. 77 FR 61624 - Patuxent Research Refuge, Prince George's and Anne Arundel Counties, MD; Draft Comprehensive...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-10

    ... environmental assessment (CCP/EA) for Patuxent Research Refuge (Patuxent RR), located in Prince George's and... international research institute for wildlife and applied environmental research. Background The CCP Process The... Fish and Wildlife Service Patuxent Research Refuge, Prince George's and Anne Arundel Counties, MD...

  6. ANN reconstruction of geoelectrical parameters of the Minou fault zone by scalar CSAMT data

    NASA Astrophysics Data System (ADS)

    Spichak, V.; Fukuoka, K.; Kobayashi, T.; Mogi, T.; Popova, I.; Shima, H.

    2002-01-01

    Scalar controlled source AMT data collected in a northern part of the Minou fault area (Kyushu Island, Japan) are interpreted by means of the ANN Expert System MT-NET in terms of 3-D earth macro-parameters. A number of synthetic responses created in advance by means of forward modeling in typical 3-D geoelectrical models (conductive and resistive local bodies, fault, dyke, etc.) formed sequences for teaching an artificial neural network (ANN). MT-NET, once taught to the correspondence between the data images and the model parameters, is able to recognize unknown parameters given even incomplete and noisy data. The results of ANN reconstruction are compared with the resistivity distribution obtained for the same area using fast 3-D imaging based on synthesis of 1-D Bostick transforms of the apparent resistivities beneath each site as well as on 2-D TM mode inversion along four profiles. The best-fitting model reconstructed by ANN belongs to the guessed model class formed by "dykes buried in the two-layered earth", on the one hand, and to the equivalence class formed by all models giving rms misfit less than the noise level in the data, on the other hand.

  7. Optimization of culture medium and modeling of curdlan production from Paenibacillus polymyxa by RSM and ANN.

    PubMed

    Rafigh, Sayyid Mahdi; Yazdi, Ali Vaziri; Vossoughi, Manouchehr; Safekordi, Ali Akbar; Ardjmand, Mehdi

    2014-09-01

    Paenibacillus polymyxa ATCC 21830 was used for the production of curdlan gum for first time. A Box-Behnken experimental design was applied to optimize six variables of batch fermentation culture each at three levels. Statistical analyses were employed to investigate the direct and interactive effects of variables on curdlan production. Optimum cultural conditions were temperature (50°C), pH (7), fermentation time (96 h), glucose (100 g/L), yeast extract (3 g/L) and agitation speed (150 rpm). The yield of curdlan production was 6.89 g/L at optimum condition medium. Response surface methodology (RSM) and artificial neural network (ANN) were used to model cultural conditions of curdlan production. The maximum yield of curdlan production were predicted to be 6.68 and 6.85 g/L by RSM and ANN at optimum condition. The prediction capabilities of RSM and ANN were then statistically compared. The results showed that the ANN model is much more accurate in prediction as compared to the RSM. The infrared (IR) and NMR spectra, the thermogram of DSC and pattern of X-ray diffraction for the curdlan of the present study were almost identical to those of the commercial curdlan sample. The average molecular weight of the purified curdlan was determined to be 170 kDa by gel permeation chromatography. Copyright © 2014 Elsevier B.V. All rights reserved.

  8. Damaging Confusions in England's KS2 Reading Tests: A Response to Anne Kispal

    ERIC Educational Resources Information Center

    Hilton, Mary

    2006-01-01

    This article is written in response to the article published in issue 39.3 of this journal, in November 2005, on the nature of the Key Stage 2 National Curriculum reading tests: "Examining England's National Curriculum assessments: an analysis of the KS2 reading test questions" by Anne Kispal of the National Foundation for Educational…

  9. The influence of emerging administrative scientists: an interview with Anne Miller.

    PubMed

    Miller, Anne; Adams, Jeffrey M

    2015-04-01

    This department highlights emerging nursing leaders and scientists demonstrating promise in advancing innovation and patient care leadership in practice, policy, research, education, and theory. This interview profiles Anne Miller, PhD, BA, assistant professor jointly appointed to the Center of Interdisciplinary Health Workforce Studies and the School of Nursing at Vanderbilt University Medical Center.

  10. Development Opportunities: The Effect of UMES on the Town of Princess Anne, Maryland.

    ERIC Educational Resources Information Center

    Sann, David; Tervala, Victor K.

    A study was done of the potential economic effect of the University of Maryland Eastern Shore (UMES) campus on the nearby town of Princess Anne, a small rural community. The study used estimates made by a UMES faculty member which projected that UMES students in 1990 spent over $7 million on goods and services unrelated to educational expenses.…

  11. Exploring Social Studies through Multicultural Literature: "Legend of the St Ann's Flood"

    ERIC Educational Resources Information Center

    Fry, Sara Winstead

    2009-01-01

    The search for literature that is of high quality and interest, is written at age-appropriate levels for adolescent readers, addresses social studies topics, and presents multicultural perspectives can be daunting. "Legend of the St Ann's Flood" is a fiction trade book that meets all of these criteria. Its setting in Trinidad and Tobago…

  12. A Case Study of the Ann Sullivan Center in Lima, Peru

    ERIC Educational Resources Information Center

    Noto, Lori A.

    2005-01-01

    A qualitative study was conducted to describe and explain the educational program at the Ann Sullivan Center, a nationally and internationally recognized program for individuals with disabilities in Peru. The program provides educational programming to individuals with autism, severe disabilities and challenging behaviors across the lifespan. A…

  13. Bethany Ann Teachman: Award for Distinguished Scientific Early Career Contributions to Psychology

    ERIC Educational Resources Information Center

    American Psychologist, 2012

    2012-01-01

    Presents a short biography of one of the winners of the American Psychological Association's Award for Distinguished Scientific Early Career Contributions to Psychology. The 2012 winner is Bethany Ann Teachman for transformative, translational research integrating social cognition, life-span, and perceptual approaches to investigating clinical…

  14. Beneficial application of landfill mining Millersville Landfill, Anne Arundel County, MD

    SciTech Connect

    Vanetti, D.J.

    1995-09-01

    Several studies and investigations have been completed for the Millersville Sanitary Landfill in Anne Arundel County, Maryland. The studies and reports range from detailed hydrogeologic investigations through review of closure alternatives for the individual refuse disposal cells located at the landfill. As a result of the evaluations and studies, one recommendation that was put before Anne Arundel County is the excavation and relocation of refuse from Cell 3 to: (1) create an infiltration basin; and (2) reduce the overall refuse footprint at the site, resulting in reduce long term environmental impacts and closure costs. Subsequent to this recommendation, several preliminary reviews have been held between Anne Arundel County, regulatory agencies and their consultants, Stearns & Wheler. These discussions indicated that it would be feasible, and the concept acceptable, to relocate the refuse in Cell 3 to ultimately create an infiltration basin. Subsequent to the preliminary meetings, a project plan and construction Contract Documents and Drawings were developed by Stearns & Wheler. The Project Plan was submitted to the State regulatory agencies (Maryland and Department of Environment (MDE) and Maryland Department of Natural Resources (DNR)), Millersville Landfill Citizen`s Advisory Committee, and Anne Arundel County (Department of public Works (DPW), Permit Acquisition and Code Enforcement (PACE) and Soil Conservation District (SCD)) for review and comment prior to undertaking the relocation of refuse in Cell 3.

  15. The Nation behind the Diary: Anne Frank and the Holocaust of the Dutch Jews

    ERIC Educational Resources Information Center

    Foray, Jennifer L.

    2011-01-01

    Since its first appearance in 1947, "The Diary of Anne Frank" has been translated into sixty-five different languages, including Welsh, Esperanto, and Faroese. Millions and perhaps even billions of readers, scattered throughout the globe and now spanning multiple generations, are familiar with the life and work of this young Jewish…

  16. English for Specific Purposes: The State of the Art (An Online Interview with Ann M. Johns)

    ERIC Educational Resources Information Center

    Johns, Ann M.; Salmani Nodoushan, M. A.

    2015-01-01

    This forum paper is based on a friendly and informative interview conducted with Professor Ann M. Johns. In providing answers to the interview questions, Professor Johns suggests that all good teaching is ESP, and also distinguishes between EOP and ESP in that the former entails much more "just in time" learning while the latter may be…

  17. 78 FR 65375 - Notice of Inventory Completion: University of Michigan, Ann Arbor, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-31

    ... National Park Service Notice of Inventory Completion: University of Michigan, Ann Arbor, MI AGENCY: National Park Service, Interior. ACTION: Notice. SUMMARY: The University of Michigan has completed an.... This notice is published as part of the National Park Service's administrative responsibilities under...

  18. 78 FR 65380 - Notice of Inventory Completion: University of Michigan, Ann Arbor, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-31

    ... National Park Service Notice of Inventory Completion: University of Michigan, Ann Arbor, MI AGENCY: National Park Service, Interior. ACTION: Notice. SUMMARY: The University of Michigan has completed an... is published as part of the National Park Service's administrative responsibilities under NAGPRA, 25...

  19. 78 FR 65364 - Notice of Inventory Completion: University of Michigan, Ann Arbor, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-31

    ... National Park Service Notice of Inventory Completion: University of Michigan, Ann Arbor, MI AGENCY: National Park Service, Interior. ACTION: Notice. SUMMARY: The University of Michigan has completed an..., Ionia, and Kent Counties, MI. This notice is published as part of the National Park Service's...

  20. 78 FR 65382 - Notice of Inventory Completion: University of Michigan, Ann Arbor, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-31

    ... National Park Service Notice of Inventory Completion: University of Michigan, Ann Arbor, MI AGENCY: National Park Service, Interior. ACTION: Notice. SUMMARY: The University of Michigan has completed an.... This notice is published as part of the National Park Service's administrative responsibilities under...

  1. 78 FR 65360 - Notice of Inventory Completion: University of Michigan, Ann Arbor, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-31

    ... National Park Service Notice of Inventory Completion: University of Michigan, Ann Arbor, MI AGENCY: National Park Service, Interior. ACTION: Notice. SUMMARY: The University of Michigan has completed an... notice is published as part of the National Park Service's administrative responsibilities under NAGPRA...

  2. 78 FR 65366 - Notice of Inventory Completion: University of Michigan, Ann Arbor, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-31

    ... National Park Service Notice of Inventory Completion: University of Michigan, Ann Arbor, MI AGENCY: National Park Service, Interior. ACTION: Notice. SUMMARY: The University of Michigan has completed an..., Gratiot Counties, MI. This notice is published as part of the National Park Service's administrative...

  3. 78 FR 65369 - Notice of Inventory Completion: University of Michigan, Ann Arbor, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-31

    ... National Park Service Notice of Inventory Completion: University of Michigan, Ann Arbor, MI AGENCY: National Park Service, Interior. ACTION: Notice. SUMMARY: The University of Michigan has completed an.... This notice is published as part of the National Park Service's administrative responsibilities under...

  4. 78 FR 65367 - Notice of Inventory Completion: University of Michigan, Ann Arbor, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-31

    ... National Park Service Notice of Inventory Completion: University of Michigan, Ann Arbor, MI AGENCY: National Park Service, Interior. ACTION: Notice. SUMMARY: The University of Michigan has completed an... notice is published as part of the National Park Service's administrative responsibilities under NAGPRA...

  5. Evaluation of alternative management practices with the AnnAGNPS model in the Carapelle Watershed

    USDA-ARS?s Scientific Manuscript database

    The Annualized Agricultural Non-point Source (AnnAGNPS) model can be used to analyze the effectiveness of management and conservation practices that can control the impact of erosion and subsequent sediment loads in agricultural watersheds. A Mediterranean medium-size watershed (Carapelle) in Apulia...

  6. Childhood and Modernity: Dark Themes in Carol Ann Duffy's Poetry for Children

    ERIC Educational Resources Information Center

    Whitley, David

    2007-01-01

    Carol Ann Duffy's three volumes of children's poetry are important and interesting because they emerge from the work of a writer whose adult poetry has persistently associated childhood with dark and difficult areas of experience. This article explores what happens to such challenging material when a poet of major significance changes the focus of…

  7. Bethany Ann Teachman: Award for Distinguished Scientific Early Career Contributions to Psychology

    ERIC Educational Resources Information Center

    American Psychologist, 2012

    2012-01-01

    Presents a short biography of one of the winners of the American Psychological Association's Award for Distinguished Scientific Early Career Contributions to Psychology. The 2012 winner is Bethany Ann Teachman for transformative, translational research integrating social cognition, life-span, and perceptual approaches to investigating clinical…

  8. The Search for Family: Comedy and Pathos in Anne Tyler's Later Novels.

    ERIC Educational Resources Information Center

    Zoghby, Mary D.

    Anne Tyler's rare talent for combining comedy and pathos enables her to create characters whose pain is felt by the reader or student even as that same reader is led into laughter by the ludicrous situations in which Tyler places these characters. In her last three novels, "Dinner at the Homesick Restaurant,""The Accidental…

  9. Application of ANN and fuzzy logic algorithms for streamflow modelling of Savitri catchment

    NASA Astrophysics Data System (ADS)

    Kothari, Mahesh; Gharde, K. D.

    2015-07-01

    The streamflow prediction is an essentially important aspect of any watershed modelling. The black box models (soft computing techniques) have proven to be an efficient alternative to physical (traditional) methods for simulating streamflow and sediment yield of the catchments. The present study focusses on development of models using ANN and fuzzy logic (FL) algorithm for predicting the streamflow for catchment of Savitri River Basin. The input vector to these models were daily rainfall, mean daily evaporation, mean daily temperature and lag streamflow used. In the present study, 20 years (1992-2011) rainfall and other hydrological data were considered, of which 13 years (1992-2004) was for training and rest 7 years (2005-2011) for validation of the models. The mode performance was evaluated by R, RMSE, EV, CE, and MAD statistical parameters. It was found that, ANN model performance improved with increasing input vectors. The results with fuzzy logic models predict the streamflow with single input as rainfall better in comparison to multiple input vectors. While comparing both ANN and FL algorithms for prediction of streamflow, ANN model performance is quite superior.

  10. Master Builder of Bridges between Research and Practice: An Interview with Ann Robinson

    ERIC Educational Resources Information Center

    Henshon, Suzanna E.

    2010-01-01

    This article presents an interview with Ann Robinson, a professor of educational psychology and founding director of the Center for Gifted Education at the University of Arkansas at Little Rock. She is the president of the National Association for Gifted Children (NAGC), a former editor of the Gifted Child Quarterly (GCQ), and was the first Editor…

  11. Master Builder of Bridges between Research and Practice: An Interview with Ann Robinson

    ERIC Educational Resources Information Center

    Henshon, Suzanna E.

    2010-01-01

    This article presents an interview with Ann Robinson, a professor of educational psychology and founding director of the Center for Gifted Education at the University of Arkansas at Little Rock. She is the president of the National Association for Gifted Children (NAGC), a former editor of the Gifted Child Quarterly (GCQ), and was the first Editor…

  12. PAPERS OF THE ARABIC TEACHERS' WORKSHOP (ANN ARBOR, JUNE 8-18, 1965).

    ERIC Educational Resources Information Center

    Center for Applied Linguistics, Washington, DC.

    THIS REPORT IS BASED ON PAPERS GIVEN AT THE ARABIC TEACHERS' WORKSHOP HELD IN ANN ARBOR, MICHIGAN, JUNE 8-18, 1965. THE REPORT IS DIVIDED INTO THREE PARTS--(1) METHODS OF TEACHING MODERN STANDARD ARABIC, (2) CONTENT OF ELEMENTARY ARABIC INSTRUCTION, (3) SELECTIVE LIST OF INSTRUCTIONAL MATERIALS FOR MODERN STANDARD ARABIC. THE SPECIAL PROBLEMS OF…

  13. Constructing Anne Frank: Critical Literacy and the Holocaust in Eighth-Grade English

    ERIC Educational Resources Information Center

    Spector, Karen; Jones, Stephanie

    2007-01-01

    Using the assumption that texts actively work to position readers and readers actively work to position texts, the authors argue that moral lessons emerge from the interactions between texts, readers, and the ideological narratives that inspire both. After differentiating versions of Anne Frank's diary and explicating motives behind their…

  14. Should You Teach "Anne Frank: The Diary of a Young Girl"?

    ERIC Educational Resources Information Center

    Rochman, Hazel

    1998-01-01

    Considers the value of teaching "Anne Frank" and suggests that the book be just a starting point for exposing readers to other views of the Holocaust. Annotated bibliographies are included for other personal accounts of the Holocaust, with appropriate grade levels indicated. (LRW)

  15. Symbolism--The Main Artistic Style of Katherine Anne Porter's Short Stories

    ERIC Educational Resources Information Center

    Wang, Ru

    2010-01-01

    The paper takes Katherine Anne Porter's two short stories: "Flowering Judas", "The Grave" as objects of study. It will try to analyze Porter's writing style through her imaginary conception, vivid psychological description and multiple symbolisms so that we can understand her studies and her attitudes to female psychological…

  16. Audits of Meaning: A Festschrift in Honor of Ann E. Berthoff.

    ERIC Educational Resources Information Center

    Smith, Louise Z., Ed.

    A tribute to the work of Ann Berthoff, this book--a collection of 6 poems and 21 essays--explores issues in the philosophy and teaching of composition. Each of the five sections is introduced with a poem by Marie Ponsot. Essays and their authors consist of (1) "Genre Theory, Academic Discourse, and Writing within Disciplines" (James F.…

  17. Development and Testing of an ANN Model for Estimation of Runoff from a Snow Covered Catchment

    NASA Astrophysics Data System (ADS)

    Bhadra, A.; Bandyopadhyay, A.; Chakraborty, S.; Roy, S.; Kumar, T.

    2017-06-01

    In this study, an attempt has been made to develop an ANN model to estimate runoff from a snow covered catchment of eastern Himalaya using feed-forward back-propagation algorithm with Levenberg-Marquardt optimization technique. The ANN model was programmed in C++ whereas a user-friendly GUI was developed in VB. The effects of past days rainfall and present day temperature data was observed on the performance of the selected ANN architecture in modelling snowmelt and monsoon season runoff. For this purpose, 8 years' (2003-2010) daily data (rainfall, temperature, and discharge) were collected from CWC which were again divided into two parts (2003-2008 and 2009-2010) for training and testing of the ANN model, respectively. Initially it was found that the network can produce acceptable results with only rainfall data as input, but it needs at least past 3 days rainfall data to account for the antecedent moisture condition of the catchment. Networks 4-16-16-1 (with past 3 days rainfall) and 6-18-18-18-1 (with past 5 days rainfall) resulted modelling efficiency of 79.38 and 82.06% in training and 55.13 and 61.06% in validation, respectively. However, addition of present day temperature data as another input improved the performance in both training (ME 83.10 and 82.22%) and testing (ME 62.64 and 61.89%) marginally.

  18. Friendly Letters on the Correspondence of Helen Keller, Anne Sullivan, and Alexander Graham Bell.

    ERIC Educational Resources Information Center

    Blatt, Burton

    1985-01-01

    Excerpts from the letters between Alexander Graham Bell and Anne Sullivan and Helen Keller are given to illustrate the educational and personal growth of Helen Keller as well as the educational philosophy of Bell regarding the education of the deaf blind. (DB)

  19. Joseph Campbell, Jung, Anne Tyler, and "The Cards": The Spiritual Journey in "Searching for Caleb."

    ERIC Educational Resources Information Center

    Thomson, Karen M.

    Joseph Campbell, Carl Jung, and Anne Tyler have all dealt with spiritual journeys and card reading in their writings. In his book "Tarot Revelations," Joseph Campbell discusses his first association with tarot cards, dating from 1943, when he was introduced to the symoblism of playing cards by his friend and mentor, Heinrich Zimmer. Carl…

  20. Alternate Sources of Funding: Scholarship Fund Raising. and Anne Arundel Community College Scholarship Fund Raising Campaign.

    ERIC Educational Resources Information Center

    Weinberg, Barry M.

    This two-part paper provides guidance on alternative sources of funding for college scholarships and describes Anne Arundel Community College's (AACC's) Scholarship Fund Raising Campaign. First, an outline is presented, covering: (1) prerequisites to fundraising (i.e., leadership, sense of direction, commitment, and a plan for identifying,…