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Sample records for alpha line profile

  1. Lyman alpha solar spectral irradiance line profile observations and models

    NASA Astrophysics Data System (ADS)

    Snow, Martin; Machol, Janet; Quemerais, Eric; Curdt, Werner; Kretschmar, Matthieu; Haberreiter, Margit

    2016-04-01

    Solar lyman alpha solar spectral irradiance measurements are available on a daily basis, but only the 1-nm integrated flux is typically published. The International Space Science Institute (ISSI) in Bern, Switzerland has sponsored a team to make higher spectral resolution data available to the community. Using a combination of SORCE/SOLSTICE and SOHO/SUMER observations plus empirical and semi-empirical modeling, we will produce a dataset of the line profile. Our poster will describe progress towards this goal.

  2. Alpha Virginis: line-profile variations and orbital elements

    NASA Astrophysics Data System (ADS)

    Harrington, David; Koenigsberger, Gloria; Olguín, Enrique; Ilyin, Ilya; Berdyugina, Svetlana V.; Lara, Bruno; Moreno, Edmundo

    2016-05-01

    Context. Alpha Virginis (Spica) is a B-type binary system whose proximity and brightness allow detailed investigations of the internal structure and evolution of stars undergoing time-variable tidal interactions. Previous studies have led to the conclusion that the internal structure of Spica's primary star may be more centrally condensed than predicted by theoretical models of single stars, raising the possibility that the interactions could lead to effects that are currently neglected in structure and evolution calculations. The key parameters in confirming this result are the values of the orbital eccentricity e, the apsidal period U, and the primary star's radius, R1. Aims: The aim of this paper is to analyze the impact that Spica's line profile variability has on the derivation of its orbital elements and to explore the use of the variability for constraining R1. Methods: We use high signal-to-noise and high spectral resolution observations obtained in 2000, 2008, and 2013 to derive the orbital elements from fits to the radial velocity curves. We produce synthetic line profiles using an ab initio tidal interaction model. Results: The general variations in the line profiles can be understood in terms of the tidal flows, whose large-scale structure is relatively fixed in the rotating binary system reference frame. Fits to the radial velocity curves yield e = 0.108 ± 0.014. However, the analogous RV curves from theoretical line profiles indicate that the distortion in the lines causes the fitted value of e to depend on the argument of periastron; i.e., on the epoch of observation. As a result, the actual value of e may be as high as 0.125. We find that U = 117.9 ± 1.8, which is in agreement with previous determinations. Using the value R1 = 6.8 R⊙ derived by Palate et al. (2013) the value of the observational internal structure constant k2,obs is consistent with theory. We confirm the presence of variability in the line profiles of the secondary star. RV

  3. The Ly(alpha) Line Profiles of Ultraluminous Infrared Galaxies: Fast Winds and Lyman Continuum Leakage

    NASA Technical Reports Server (NTRS)

    Martin, Crystal L.; Dijkstra, Mark; Henry, Alaina L.; Soto, Kurt T.; Danforth, Charles W.; Wong, Joseph

    2015-01-01

    We present new Hubble Space Telescope Cosmic Origins Spectrograph far-ultraviolet (far-UV) spectroscopy and Keck Echellete optical spectroscopy of 11 ultraluminous infrared galaxies (ULIRGs), a rare population of local galaxies experiencing massive gas inflows, extreme starbursts, and prominent outflows. We detect Ly(alpha) emission from eight ULIRGs and the companion to IRAS09583+4714. In contrast to the P Cygni profiles often seen in galaxy spectra, the Ly(alpha) profiles exhibit prominent, blueshifted emission out to Doppler shifts exceeding -1000 km/s in three H II-dominated and two AGN-dominated ULIRGs. To better understand the role of resonance scattering in shaping the Ly(alpha) line profiles, we directly compare them to non-resonant emission lines in optical spectra. We find that the line wings are already present in the intrinsic nebular spectra, and scattering merely enhances the wings relative to the line core. The Ly(alpha) attenuation (as measured in the COS aperture) ranges from that of the far-UV continuum to over 100 times more. A simple radiative transfer model suggests the Ly(alpha) photons escape through cavities which have low column densities of neutral hydrogen and become optically thin to the Lyman continuum in the most advanced mergers. We show that the properties of the highly blueshifted line wings on the Ly(alpha) and optical emission-line profiles are consistent with emission from clumps of gas condensing out of a fast, hot wind. The luminosity of the Ly(alpha) emission increases nonlinearly with the ULIRG bolometric luminosity and represents about 0.1-1% of the radiative cooling from the hot winds in the H II-dominated ULIRGs.

  4. The Ly(alpha) Line Profiles of Ultraluminous Infrared Galaxies: Fast Winds and Lyman Continuum Leakage

    NASA Technical Reports Server (NTRS)

    Martin, Crystal L.; Dijkstra, Mark; Henry, Alaina L.; Soto, Kurt T.; Danforth, Charles W.; Wong, Joseph

    2015-01-01

    We present new Hubble Space Telescope Cosmic Origins Spectrograph far-ultraviolet (far-UV) spectroscopy and Keck Echellete optical spectroscopy of 11 ultraluminous infrared galaxies (ULIRGs), a rare population of local galaxies experiencing massive gas inflows, extreme starbursts, and prominent outflows. We detect Ly(alpha) emission from eight ULIRGs and the companion to IRAS09583+4714. In contrast to the P Cygni profiles often seen in galaxy spectra, the Ly(alpha) profiles exhibit prominent, blueshifted emission out to Doppler shifts exceeding -1000 km/s in three H II-dominated and two AGN-dominated ULIRGs. To better understand the role of resonance scattering in shaping the Ly(alpha) line profiles, we directly compare them to non-resonant emission lines in optical spectra. We find that the line wings are already present in the intrinsic nebular spectra, and scattering merely enhances the wings relative to the line core. The Ly(alpha) attenuation (as measured in the COS aperture) ranges from that of the far-UV continuum to over 100 times more. A simple radiative transfer model suggests the Ly(alpha) photons escape through cavities which have low column densities of neutral hydrogen and become optically thin to the Lyman continuum in the most advanced mergers. We show that the properties of the highly blueshifted line wings on the Ly(alpha) and optical emission-line profiles are consistent with emission from clumps of gas condensing out of a fast, hot wind. The luminosity of the Ly(alpha) emission increases nonlinearly with the ULIRG bolometric luminosity and represents about 0.1-1% of the radiative cooling from the hot winds in the H II-dominated ULIRGs.

  5. PROFILES OF Ly{alpha} EMISSION LINES OF THE EMITTERS AT z = 3.1

    SciTech Connect

    Yamada, T.; Morimoto, N.; Matsuda, Y.; Kousai, K.; Hayashino, T.; Umemura, M.

    2012-05-20

    We present the results of the observations of the Ly{alpha} line profiles of 91 emission-line galaxies at z = 3.1 with a spectral resolution of {lambda}/{delta}{lambda}(FWHM) Almost-Equal-To 1700 or 180 km s{sup -1}. A significant fraction of {approx}50% of the observed objects show the characteristic double peaks in their Ly{alpha} profile. The red peak is much stronger than the blue one for most of the cases. The red peaks themselves also show weak but significant asymmetry and their widths are correlated with the velocity separation of the red and the blue peaks. This implies that the peaks are not isolated multiple components with different velocities but parts of a single line that are modified by the absorption and/or scattering by the associated neutral hydrogen gas. The characteristic profile can be naturally explained by scattering in the expanding shell of the neutral hydrogen surrounding the Ly{alpha} emitting region while the attenuation by the intergalactic medium should also be considered. Our results suggest that the star formation in these Ly{alpha} emitters are dominated by young burst-like events that produce the intrinsic Ly{alpha} emission as well as the gas outflow.

  6. The intrinsic H I Lyman-alpha line profiles of late-type stars

    NASA Technical Reports Server (NTRS)

    Neff, J. E.; Landsman, W. B.; Bookbinder, J. A.; Linsky, J. L.

    1990-01-01

    The Lyman-alpha line of neutral hydrogen is probably the most important cooling channel for chromospheric plasma in late-type stars, yet it is also the least studied major line in the far ultraviolet. The scattering of much of the stellar Lyman-alpha flux by interstellar hydrogen, coupled with the geocoronal emission foreground, seriously complicates the analysis of the Lyman-alpha spectra. The influence of the local interstellar medium on the observed profiles was circumvented by observing stars with radial velocities sufficiently high to Doppler shift the center of the stellar emission line out of the interstellar absorption core. There are several stars that have high radial velocities by virtue of their presence in close binary systems. High resolution IUE (International Ultraviolet Explorer) spectra of Ly alpha line of two such eclipsing binary stars, AR Lac and TY Pyx, are obtained, at each orbital quadrature phase, when the projected orbital velocity is a maximum. By combining the spectra from opposite quadratures it is possible to piece together the entire stellar emission profiles. The third star in this study, delta Lep, is a single star with a high space velocity.

  7. Hydrogen Balmer alpha intensity distributions and line profiles from multiple scattering theory using realistic geocoronal models

    NASA Technical Reports Server (NTRS)

    Anderson, D. E., Jr.; Meier, R. R.; Hodges, R. R., Jr.; Tinsley, B. A.

    1987-01-01

    The H Balmer alpha nightglow is investigated by using Monte Carlo models of asymmetric geocoronal atomic hydrogen distributions as input to a radiative transfer model of solar Lyman-beta radiation in the thermosphere and atmosphere. It is shown that it is essential to include multiple scattering of Lyman-beta radiation in the interpretation of Balmer alpha airglow data. Observations of diurnal variation in the Balmer alpha airglow showing slightly greater intensities in the morning relative to evening are consistent with theory. No evidence is found for anything other than a single sinusoidal diurnal variation of exobase density. Dramatic changes in effective temperature derived from the observed Balmer alpha line profiles are expected on the basis of changing illumination conditions in the thermosphere and exosphere as different regions of the sky are scanned.

  8. Hydrogen Balmer alpha intensity distributions and line profiles from multiple scattering theory using realistic geocoronal models

    NASA Technical Reports Server (NTRS)

    Anderson, D. E., Jr.; Meier, R. R.; Hodges, R. R., Jr.; Tinsley, B. A.

    1987-01-01

    The H Balmer alpha nightglow is investigated by using Monte Carlo models of asymmetric geocoronal atomic hydrogen distributions as input to a radiative transfer model of solar Lyman-beta radiation in the thermosphere and atmosphere. It is shown that it is essential to include multiple scattering of Lyman-beta radiation in the interpretation of Balmer alpha airglow data. Observations of diurnal variation in the Balmer alpha airglow showing slightly greater intensities in the morning relative to evening are consistent with theory. No evidence is found for anything other than a single sinusoidal diurnal variation of exobase density. Dramatic changes in effective temperature derived from the observed Balmer alpha line profiles are expected on the basis of changing illumination conditions in the thermosphere and exosphere as different regions of the sky are scanned.

  9. The asymmetric profile of the H76 alpha line emission from MWC349

    NASA Technical Reports Server (NTRS)

    Rodriquez, L. F.; Canto, J.; Escalante, V.; Moran, J. M.

    1986-01-01

    MWC349 is an emission-line star found by Merrill, Humason and Burwell (1932). Braes, Habing and Schoenmaker (1972) discovered that it is a strong radio source. The radio emission originates in a massive ionized wind that is expanding with a velocity of about 50 km s(-1). Its continuum spectrum fits well a nu(0.6) power law from the cm wavelengths to the far-IR. Radio recombination line emission from the envelope of MWC349 was first detected by Altenhoff, Strittmatter and Wendker (1981). We have obtained good signal-to-noise ratio, Very Large Array observations of the H76 alpha radio recombination line from the ionized wind of MWC349. Our data reveal that the profile is markedly asymmetric, with a steep rise on the blue side. This asymmetry could be due to non-LTE effects in the formation and transfer of the line or to intrinsic asymmetries in the envelope. Our analysis suggests that most probably the peculiar profile is caused by a non-LTE enhancement of the line emission from the side of the envelope nearer to the observer. This asymmetry has the opposite sense than that observed in optical and IR recombination lines, where a different effect (absorption of the stellar continuum by the gas in the wind between the star and the observer) is known to be dominant, leading to the classic P Cygni profile. We propose that the profiles of the radio recombination lines from ionized stellar winds will have this characteristic shape, while optical and IR recombination lines are characterized by P Cygni-like profiles. Unfortunately, at present the detection of radio recombination lines from ionized stellar winds is only feasible for MWC349 and a few other objects.

  10. Kinetic-Energy Distribution of D(2p) Atoms from Analysis of the D Lyman-Alpha Line Profile

    NASA Technical Reports Server (NTRS)

    Ciocca, M.; Ajello, Joseph M.; Liu, Xianming; Maki, Justin

    1997-01-01

    The kinetic-energy distribution of D(2p) atoms resulting from electron-impact dissociation of D2 has been measured. A high-resolution vacuum ultraviolet spectrometer was employed for the first measurement of the D Lyman-alpha (D L(alpha)) emission line profiles at 20- and 100-eV excitation energies. Analysis of the deconvoluted line profile of D L(alpha) at 100 eV reveals the existence of a narrow line central peak of 29+/-2 mA full width at half maximum and a broad pedestal wing structure about 190 mA wide. The wings of the line can be used to determine the fast atom distribution. The wings of D L(alpha) arise from dissociative excitation of a series of doubly excited states that cross the Franck-Condon region between 23 and 40 eV. The fast atom distribution at 100-eV electron impact energy spans the energy range from 1 to 10 eV with a peak value near 6 eV. Slow D(2p) atoms characterized by a distribution function with peak energy near 100 meV produce the central peak profile, which is nearly independent of the impact energy. The deconvoluted line profiles of the central peak at 20 eV for dissociative excitation of D2 and H2 are fitted with an analytical function for use in calibration of space flight instrumentation equipped with a D/H absorption cell. The kinetic-energy and line profile results are compared to similar measurements for H2. The absolute cross sections for the line center (slow atoms) and wings (fast atoms) and total emission line profile were measured from threshold to 400 eV. Analytical model coefficients are given for the energy dependence of the measured slow atom cross section.

  11. Kinetic-Energy Distribution of D(2p) Atoms from Analysis of the D Lyman-Alpha Line Profile

    NASA Technical Reports Server (NTRS)

    Ciocca, M.; Ajello, Joseph M.; Liu, Xianming; Maki, Justin

    1997-01-01

    The kinetic-energy distribution of D(2p) atoms resulting from electron-impact dissociation of D2 has been measured. A high-resolution vacuum ultraviolet spectrometer was employed for the first measurement of the D Lyman-alpha (D L(alpha)) emission line profiles at 20- and 100-eV excitation energies. Analysis of the deconvoluted line profile of D L(alpha) at 100 eV reveals the existence of a narrow line central peak of 29+/-2 mA full width at half maximum and a broad pedestal wing structure about 190 mA wide. The wings of the line can be used to determine the fast atom distribution. The wings of D L(alpha) arise from dissociative excitation of a series of doubly excited states that cross the Franck-Condon region between 23 and 40 eV. The fast atom distribution at 100-eV electron impact energy spans the energy range from 1 to 10 eV with a peak value near 6 eV. Slow D(2p) atoms characterized by a distribution function with peak energy near 100 meV produce the central peak profile, which is nearly independent of the impact energy. The deconvoluted line profiles of the central peak at 20 eV for dissociative excitation of D2 and H2 are fitted with an analytical function for use in calibration of space flight instrumentation equipped with a D/H absorption cell. The kinetic-energy and line profile results are compared to similar measurements for H2. The absolute cross sections for the line center (slow atoms) and wings (fast atoms) and total emission line profile were measured from threshold to 400 eV. Analytical model coefficients are given for the energy dependence of the measured slow atom cross section.

  12. Mass loss from alpha Cyg /A2Ia/ derived from the profiles of low excitation Fe II lines

    NASA Technical Reports Server (NTRS)

    Hensberge, H.; De Loore, C.; Lamers, H. J. G. L. M.; Bruhweiler, F. C.

    1982-01-01

    The low-excitation Fe II lines in the spectral region 2000-3000 A are studied in the spectrum of alpha-Cyg. The profiles of the resonance lines are described by four representative parameters, and a preliminary model is derived from the dependence of these parameters on theoretical line strength, taking into account the influence of blending photospheric lines in an overall and qualitative way. At least 11% of all iron in the wind is once ionized, unless a non-thermal heating source enhances the fraction Fe(++) without destroying much Al(+). It is shown that the contribution of blending photospheric absorption lines to weaker P Cygni profiles has been previously largely underestimated. The mass loss rate corresponding to the model is derived, and is smaller by a factor of 500 than the one derived from the infrared excess by Barlow and Cohen (1977).

  13. Ultraviolet observations of cool stars. VI - L alpha and Mg II emission line profiles /and a search for flux variability/ in Arcturus

    NASA Technical Reports Server (NTRS)

    Mcclintock, W.; Moos, H. W.; Henry, R. C.; Linsky, J. L.; Barker, E. S.

    1978-01-01

    High-precision, high-resolution profiles of the L alpha and Mg II k chromospheric emission lines from Arcturus (alpha Boo) obtained with the Princeton Experimental Package aboard the Copernicus satellite are presented. Asymmetries seen in the profiles of these lines are probably intrinsic to the star, rather than the result of interstellar absorption. In contrast to previous observations of the Ca II K emission line, no evidence is found during a three-year period for variability in the profiles or in the total fluxes from these lines on time scales ranging from hours to months. Also presented is a flux profile of the O I 1302 line and flux upper limits for L beta, O VI 1032, Si III 1206, and O V 1218.

  14. Doppler line profiles measurement of the Jovian Lyman Alpha emission with OAO-C

    NASA Technical Reports Server (NTRS)

    Barker, E. S.; Cochran, W. D.; Smith, H. J.

    1982-01-01

    Observation of Jupiter made with the high resolution ultraviolet spectrometer of the Orbiting Astronomical Observatory copernicus in April and May, 1980, yield a Jovian Lyman alpha emission intensity of 7 + or 2.5 RR. This indicates a decrease by about a factor of two since the Voyager ultraviolet spectrometer measurements, nearly a year earlier. An unusually high column abundance of hydrogen atoms above the methane homopause at the Voyager epoch is indicated. Since the auroral charged particle bombardment of molecular hydrogen is expected to contribute significantly to the global population of the hydrogen atoms, it is suggested that at the time of the Voyager Jupiter encounter unusually high auroral activity existed, perhaps d to the high concentration of the Io plasma torus. The temporal variation of the Saturn lyman alpha emission, when contrasted with the Jovian data, reveals that the auroral processes are not nearly as important in determining the Saturn Lyman alpha intensity in the nonauroral region.

  15. Forbidden line and H-alpha profiles in T Tauri star spectra - A probe of anisotropic mass outflows and circumstellar disks

    NASA Technical Reports Server (NTRS)

    Edwards, Suzan; Heyer, Ingeborg; Cabrit, Sylvie; Strom, Stephen E.; Strom, Karen M.

    1987-01-01

    The results of a high-resolution spectroscopic study of 10 T Tauri stars (TTS) and two Herbig emission stars are presented based on red echelle spectra including the lines of forbidden O I 6300 A, forbidden N II 6584 A, forbidden S II 6716, 6731 A, as well as H-alpha. The forbidden lines display a continuous progression of profile types. The velocity structure in the forbidden lines is critically examined and compared to computed line profiles for a number of different wind models. Constant velocity spherical or conical winds fail to reproduce the observed line profiles, which are better explained by a wind with a latitude-dependent velocity field. A prediction of the wind model correlating the velocity of the reversal at H-alpha and the forbidden line velocity structure as a function of the view angle to the star is explored. Estimates of the average densities and sizes for the TTS forbidden emission regions are presented, and mass-loss rates are computed. IRAS far-IR fluxes are used to estimate the disk sizes.

  16. Rapid line-profile variability of H-alpha and H-beta in the A-type shell star HD 163296

    NASA Astrophysics Data System (ADS)

    Pogodin, M. A.

    1994-02-01

    The results of the H-alpha and H-beta line profile investigation of an A0-shell star HD 163296 are presented. 47 high-resolution CCD spectra (35 for H-alpha and 12 for H-beta) were obtained on July 15-20, 1991 and on July 24-27, 1992. A considerable profile variability is found on time scales from one hour to a few days. The main properties of the night-to-night variations are strong change in shape of the entire line profile with the exception of the primary PCyg-absorption which remains relatively constant both in strength and in position. Two types of extremely rapid variations (tau approximately equal hours) are discovered: (a) positional shift of sharp spectral bumps, and (b) monotonous flux variations of different parts of a profile during a night. A qualitative explanation in the framework of the model for an envelope containing an active non-stable region formed by an equatorially concentrated stellar wind and an external cool shell is proposed for the observed variability. Some reasons for the extremely rapid profile changes are considered.

  17. Hydrogen Lyman Alpha Spectral Line Profiles in Coronal Holes from 1.5 - 6.5 Solar Radii

    NASA Astrophysics Data System (ADS)

    Suleiman, R. M.; Kohl, J. L.; Cranmer, S. R.

    2007-12-01

    UVCS has made detailed measurements of H I Lyα spectral line profiles in a polar coronal hole at projected heliocentric heights from 3.5 to 6.5 R\\odot during 1998 January 5 -- 11. Similar polar coronal hole measurements were made during 1998 June 16 -- 21. Earlier UVCS observations obtained at 1.5 to 2.5 R\\odot are used for comparison. In addition, new measurements are being made for the current phase of the solar cycle. From these measurements we derive 1/e half widths of coronal velocity distributions at the observed heights. The velocity distribution includes all motions contributing to the Doppler shifts along the line of sight (LOS). We also measure absolute intensities that can be used to derive outflow speeds via a Doppler dimming analysis. At large heights in coronal holes, the outflowing coronal plasma becomes nearly collisionless and the ionization balance is believed to become frozen. H I Lyα profile measurements characterize the neutral hydrogen velocity distribution, which at lower heights can also be used to describe the proton distribution. However, in the regions above 3~R\\odot, the H0 velocity distribution may not be the same as that for the protons because the characteristic time for charge transfer between H0 and protons becomes longer than the time it takes for the plasma to flow through a density scale height. Hence, the H0 velocity distribution may not be directly affected by transverse wave motion or wave damping. An indication of an adiabatic radial decrease in the neutral hydrogen temperature would indicate a decoupling of the protons and neutral hydrogen, and also indicate the absence of mechanisms that would heat the neutrals. We will compare the observations with the predictions of a theoretical model of the combined electron, proton and neutral hydrogen plasma. Such a comparison could lead to an improved knowledge of the proton heating at these large heights. This work is supported by the National Aeronautics and Space

  18. Mass loss in Alpha Cygni - Synthetic H-Alpha profiles

    NASA Technical Reports Server (NTRS)

    Kunasz, P. B.; Morrison, N. D.

    1982-01-01

    Alpha Cygni (A2 Ia) is the brightest and best-studied A type supergiant. The star's position in the H-R diagram makes the determination of its mass loss rate extremely important. The present investigation is concerned with a semiempirical modeling of the H-alpha profile in Alpha Cyg in connection with the objective of estimating the mass loss rate and further constraining the physical state of the stellar wind. The synthetic H-alpha profiles considered are compared with the observed profiles in Alpha Cyg. It is concluded that a spherically symmetric, steady-state model, with the network of hydrogen transitions treated in detail, can fit the deeper observed profiles but not the shallower ones. The obtained results indicate that, within the context of the turbulent models, the mass loss rate of Alpha Cyg is (1.7 + or - 0.4) x 10 to the -7th solar mass per year.

  19. Genomic Profiling of a Human Leukemic Monocytic Cell-Line (THP-1) Exposed to Alpha Particle Radiation

    PubMed Central

    Chauhan, Vinita; Howland, Matthew

    2012-01-01

    This study examined alpha (α-) particle radiation effects on global changes in gene expression in human leukemic monocytic cells (THP-1) for the purposes of mining for candidate biomarkers that could be used for the development of a biological assessment tool. THP-1 cells were exposed to α-particle radiation at a dose range of 0 to 1.5 Gy. Twenty-four hours and three days after exposure gene expression was monitored using microarray technology. A total of 16 genes were dose responsive and classified as early onset due to their expression 24 h after exposure. Forty-eight transcripts were dose responsive and classified as late-onset as they were expressed 72 h after exposure. Among these genes, 6 genes were time and dose responsive and validated further using alternate technology. These transcripts were upregulated and associated with biological processes related to immune function, organelle stability and cell signalling/communication. This panel of genes merits further validation to determine if they are strong candidate biomarkers indicative of α-particle exposure. PMID:23097634

  20. Narrow lines from alpha-alpha reactions. [in Galaxy

    NASA Technical Reports Server (NTRS)

    Kozlovsky, B.; Ramaty, R.

    1977-01-01

    Intensities and spectral shapes of the prompt gamma-ray lines of Li-7 at 0.431 MeV and Be-7 at 0.478 MeV and of the delayed 0.478-MeV line, all resulting from alpha-alpha reactions, are calculated using recent direct measurements of the cross sections for the alpha-alpha reactions. It is found that the intensities of these lines are comparable to that of the 4.44-MeV line of C-12, so that the investigated lines should be observable in large solar flares, provided their Doppler widths are not excessively large. An evaluation of the shapes of the prompt lines indicates that for an isotropic distribution of energetic alpha-particles, the two lines merge into a broad feature which essentially cannot be distinguished from the continuum. A situation in which the delayed 0.478-MeV line could be very narrow is considered.

  1. relline: Relativistic line profiles calculation

    NASA Astrophysics Data System (ADS)

    Dauser, Thomas

    2015-05-01

    relline calculates relativistic line profiles; it is compatible with the common X-ray data analysis software XSPEC (ascl:9910.005) and ISIS (ascl:1302.002). The two basic forms are an additive line model (RELLINE) and a convolution model to calculate relativistic smearing (RELCONV).

  2. COMPLEX VARIABILITY OF THE H{alpha} EMISSION LINE PROFILE OF THE T TAURI BINARY SYSTEM KH 15D: THE INFLUENCE OF ORBITAL PHASE, OCCULTATION BY THE CIRCUMBINARY DISK, AND ACCRETION PHENOMENA

    SciTech Connect

    Hamilton, Catrina M.; Johns-Krull, Christopher M.; Mundt, Reinhard; Herbst, William; Winn, Joshua N. E-mail: cmj@rice.edu E-mail: wherbst@wesleyan.edu

    2012-06-01

    We have obtained 48 high-resolution echelle spectra of the pre-main-sequence eclipsing binary system KH 15D (V582 Mon, P = 48.37 days, e {approx} 0.6, M{sub A} = 0.6 M{sub Sun }, M{sub B} = 0.7 M{sub Sun }). The eclipses are caused by a circumbinary disk (CBD) seen nearly edge on, which at the epoch of these observations completely obscured the orbit of star B and a large portion of the orbit of star A. The spectra were obtained over five contiguous observing seasons from 2001/2002 to 2005/2006 while star A was fully visible, fully occulted, and during several ingress and egress events. The H{alpha} line profile shows dramatic changes in these time series data over timescales ranging from days to years. A fraction of the variations are due to 'edge effects' and depend only on the height of star A above or below the razor sharp edge of the occulting disk. Other observed variations depend on the orbital phase: the H{alpha} emission line profile changes from an inverse P-Cygni-type profile during ingress to an enhanced double-peaked profile, with both a blue and a red emission component, during egress. Each of these interpreted variations are complicated by the fact that there is also a chaotic, irregular component present in these profiles. We find that the complex data set can be largely understood in the context of accretion onto the stars from a CBD with gas flows as predicted by the models of eccentric T Tauri binaries put forward by Artymowicz and Lubow, Guenther and Kley, and de Val-Borro et al. In particular, our data provide strong support for the pulsed accretion phenomenon, in which enhanced accretion occurs during and after perihelion passage.

  3. External magnetic field influence on H{sub {alpha}} line in abnormal glow discharge

    SciTech Connect

    Obradovic, B.M.; Dojcinovic, I.P.; Kuraica, M.M.; Puric, J.

    2006-04-03

    Influence of the external axial magnetic field on the hydrogen H{sub {alpha}} line profiles in an abnormal glow discharge has been studied. It has been found that the applied magnetic field predominantly increases the intensity of central component of the characteristic excessively broadened H{sub {alpha}} profile. Magnetic filed causes helical motion of electrons along the electric field lines and prolongs their trajectories increasing the number of collisions with matrix gas. This explains the increase of the central component of H{sub {alpha}} profile and can be regarded as an experimental proof for the main contribution of electron excitation to that part of the profile.

  4. The line profile variable B stars

    NASA Technical Reports Server (NTRS)

    Smith, M. A.

    1980-01-01

    The observational status of the line profile variable B stars is summarized. The following areas are discussed: recent history; evolutionary status; line profile variations; line strength variations; and photometric variations.

  5. Rocket borne solar eclipse experiment to measure the temperature structure of the solar corona via lyman-. cap alpha. line profile observations

    SciTech Connect

    Argo, H.V.

    1981-01-01

    A rocket borne experiment to measure the temperature structure of the inner solar corona via the doppler broadening of the resonance hydrogen Lyman-..cap alpha.. (lambda1216A) radiation scattered by ambient neutral hydrogen atoms was attempted during the 16 Feb 1980 solar eclipse. Two Nike-Black Brant V sounding rockets carrying instrumented payloads were launched into the path of the advancing eclipse umbra from the San Marco satellite launch platform 3 miles off the east coast of Kenya.

  6. Balmer line profiles for infalling T Tauri envelopes

    NASA Technical Reports Server (NTRS)

    Calvet, Nuria; Hartmann, Lee

    1992-01-01

    The possibility that the Balmer emission lines of T Tauri stars arise in infalling envelopes rather than winds is considered. Line profiles for the upper Balmer lines are presented for models with cone geometry, intended to simulate the basic features of magnetospheric accretion from a circumstellar disk. An escape probability treatment is used to determine line source functions in nonspherically symmetric geometry. Thermalization effects are found to produce nearly symmetric H-alpha line profiles at the same time the higher Balmer series lines exhibit inverse P Cygni profiles. The infall models produce centrally peaked emission line wings, in good agreement with observations of many T Tauri stars. It is suggested that the Balmer emission of many T Tauri stars may be produced in an infalling envelope, with blue shifted absorption contributed by an overlying wind. Some of the observed narrow absorption components with small blueshifts may also arise in the accretion column.

  7. THE FORMATION OF THE H{alpha} LINE IN THE SOLAR CHROMOSPHERE

    SciTech Connect

    Leenaarts, J.; Carlsson, M.; Rouppe van der Voort, L. E-mail: mats.carlsson@astro.uio.no

    2012-04-20

    We use state-of-the-art radiation-MHD simulations and three-dimensional (3D) non-LTE radiative transfer computations to investigate H{alpha} line formation in the solar chromosphere and apply the results of this investigation to develop the potential of H{alpha} as a diagnostic of the chromosphere. We show that one can accurately model H{alpha} line formation assuming statistical equilibrium and complete frequency redistribution provided the computation of the model atmosphere included non-equilibrium ionization of hydrogen and the Ly{alpha} and Ly{beta} line profiles are described by Doppler profiles. We find that 3D radiative transfer is essential in modeling hydrogen lines due to the low photon destruction probability in H{alpha}. The H{alpha} opacity in the upper chromosphere is mainly sensitive to the mass density and only weakly sensitive to the temperature. We find that the H{alpha} line-core intensity is correlated with the average formation height: The larger the average formation height is, the lower the intensity will be. The line-core width is a measure of the gas temperature in the line-forming region. The fibril-like dark structures seen in H{alpha} line-core images computed from our model atmosphere are tracing magnetic field lines. These structures are caused by field-aligned ridges of enhanced chromospheric mass density that raise their average formation height, and therefore make them appear dark against their deeper-formed surroundings. We compare with observations, and find that the simulated line-core widths are very similar to the observed ones, without the need for additional microturbulence.

  8. Variable Iron K(alpha) Lines in Seyfert 1 Galaxies

    NASA Technical Reports Server (NTRS)

    Weaver, K. A.; Gelbord, J.; Yaqoob, T.; White, Nicholas E. (Technical Monitor)

    2001-01-01

    We find that variability of the iron K alpha line is common in Seyfert 1 galaxies. Using data from the ASCA archive for objects that have been observed more than once during the mission, we study the time-averaged spectra from individual observations, thereby probing variability on timescales that range from days to years. Since the statistics of the data do not warrant searches for line variability in terms of a complex physical model, we use a simple Gaussian to model the gross shape of the line and then use the centroid energy, intensity, and equivalent width as robust indicators of changes in the line profile. We find that approximately 70% of Seyfert 1 galaxies (10 out of 15) show variability in at least one of these parameters: the centroid energy, intensity, and equivalent width vary in six, four, and eight sources, respectively. Because of the low signal-to-noise ratio, limited sampling, and time averaging, we consider these results to represent lower limits to the rate of incidence of variability. In most cases changes in the line do not appear to track changes in the continuum. In particular, we find no evidence for variability of the line intensity in NGC 4151, suggesting an origin in a region larger than the putative accretion disk, where most of the iron line has been thought to originate. Mrk 279 is investigated on short timescales. The time-averaged effective line energy (as measured by the Gaussian center energy, which is weighted by emission in the entire line profile) is 6.5 keV in the galaxy rest frame. As the continuum flux increases by 20% in a few hours, the Fe K line responds within approximately 10,000 seconds with the effective line energy increasing by 0.22 keV (approximately 10,500 kilometers per second). We also examine the ROSAT PSPC spectrum of Mrk 279 but find inconsistencies with ASCA. Problems with the ASCA and ROSAT calibration that affect simultaneous spectral fits at low energies are discussed in an appendix.

  9. Variable Iron K(alpha) Lines in Seyfert 1 Galaxies

    NASA Technical Reports Server (NTRS)

    Weaver, K. A.; Gelbord, J.; Yaqoob, T.; White, Nicholas E. (Technical Monitor)

    2001-01-01

    We find that variability of the iron K alpha line is common in Seyfert 1 galaxies. Using data from the ASCA archive for objects that have been observed more than once during the mission, we study the time-averaged spectra from individual observations, thereby probing variability on timescales that range from days to years. Since the statistics of the data do not warrant searches for line variability in terms of a complex physical model, we use a simple Gaussian to model the gross shape of the line and then use the centroid energy, intensity, and equivalent width as robust indicators of changes in the line profile. We find that approximately 70% of Seyfert 1 galaxies (10 out of 15) show variability in at least one of these parameters: the centroid energy, intensity, and equivalent width vary in six, four, and eight sources, respectively. Because of the low signal-to-noise ratio, limited sampling, and time averaging, we consider these results to represent lower limits to the rate of incidence of variability. In most cases changes in the line do not appear to track changes in the continuum. In particular, we find no evidence for variability of the line intensity in NGC 4151, suggesting an origin in a region larger than the putative accretion disk, where most of the iron line has been thought to originate. Mrk 279 is investigated on short timescales. The time-averaged effective line energy (as measured by the Gaussian center energy, which is weighted by emission in the entire line profile) is 6.5 keV in the galaxy rest frame. As the continuum flux increases by 20% in a few hours, the Fe K line responds within approximately 10,000 seconds with the effective line energy increasing by 0.22 keV (approximately 10,500 kilometers per second). We also examine the ROSAT PSPC spectrum of Mrk 279 but find inconsistencies with ASCA. Problems with the ASCA and ROSAT calibration that affect simultaneous spectral fits at low energies are discussed in an appendix.

  10. The Lyman-alpha line in various solar features. I - Observations

    NASA Technical Reports Server (NTRS)

    Fontenla, J.; Reichmann, E. J.; Tandberg-Hanssen, E.

    1988-01-01

    Lyman-alpha line observations of the solar atmosphere obtained by the SMM ultraviolet spectrometer and polarimeter are presented. High spectral and spatial resolution data and broadband spectroheliograms show that, on the disk, the central reversal of the line is highly variable in depth and is frequently shifted, leading to asymmetric profiles. It is suggested that a dynamic layer overlying the limb may be responsible for distorting the background profile of the line and producing the observed asymmetric profiles. Narrow and extended prominences reaching velocities of several hundred km/sec are also noted.

  11. A catalogue of Paschen-line profiles in standard stars

    NASA Astrophysics Data System (ADS)

    Huang, W.; Wallerstein, G.; Stone, M.

    2012-11-01

    We have assembled an atlas of line profiles of the Paschen Delta (Pδ) line at 10 049 Å for the use of stellar modelling. For a few stars we have substituted the Paschen Gamma (Pγ) line at 10 938 Å because the Pδ line blends with other features. Most of the targets are standard stars of spectral types from B to M. A few metal-poor stars have been included. For many of the stars we have also observed the Hydrogen Alpha (Hα) line so as to compare the profiles of lines originating from the meta-stable n = 2 level with lines originating from the n = 3 level. The greatest difference in line profile is found for high luminosity and cool stars where the departures from local thermodynamic equilibrium (LTE) in the population of the n = 2 level is expected to be the greatest. For a few stars, sample line profiles have been calculated in the LTE approximation to demonstrate the usefulness of the tabulated and displayed catalogue. The reduced observed spectra are only available at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/547/A62

  12. The XMM-Newton Iron Line Profile of NGC 3783

    NASA Technical Reports Server (NTRS)

    Reeves, J. N.; Nandra, K.; George, I. M.; Pounds, K. A.; Turner, T. J.; Yaqoob, T.

    2003-01-01

    We report on observations of the iron K line in the nearby Seyfert 1 galaxy, NGC 3783, obtained in a long, 2 orbit (approx. 240 ks) XMM-Newton observation. The line profile obtained exhibits two strong narrow peaks at 6.4 keV and at 7.0 keV, with measured line equivalent widths of 120 and 35 eV respectively. The 6.4 keV emission is the K(alpha) line from near neutral Fe, whilst the 7.0 keV feature probably originates from a blend of the neutral Fe K(beta) line and the Hydrogen-like line of Fe at 6.97 keV. The relatively narrow velocity width of the K(alpha) line (approx. less than 5000 km/s), its lack of response to the continuum emission on short timescales and the detection of a neutral Compton reflection component are all consistent with a distant origin in Compton-thick matter such as the putative molecular torus. A strong absorption line from highly ionized iron (at 6.67 keV) is detected in the time-averaged iron line profile, whilst the depth of the feature appears to vary with time, being strongest when the continuum flux is higher. The iron absorption line probably arises from the highest ionization component of the known warm absorber in NGC 3783, with an ionization of log xi approx 3 and column density of N(sub H) approx. 5 x 10(exp 22)/sq cm and may originate from within 0.1 pc of the nucleus. A weak red-wing to the iron K line profile is also detected below 6.4 keV. However when the effect of the highly ionized warm absorber on the underlying continuum is taken into account, the requirement for a relativistic iron line component from the inner disk is reduced.

  13. Anomalous Broadening of Balmer H{sub {alpha}} Line in Aluminum and Copper Hollow Cathode Glow Discharges

    SciTech Connect

    Sisovic, N. M.; Majstorovic, G. Lj.; Konjevic, N.

    2008-10-22

    The presented results are concerned with the shape of Balmer alpha line emitted from a low pressure DC glow discharge with aluminum (Al) and copper (Cu) hollow cathode (HC) in pure H{sub 2} and Ar-H{sub 2} gas mixture. The analysis indicates that the line profile represents a convolution of Gaussian profiles resulting from different collision excitation processes.

  14. Anisotropic. cap alpha. -emission of on-line separated isotopes

    SciTech Connect

    Wouters, J.; Vandeplassche, D.; van Walle, E.; Severijns, N.; Van Haverbeke, J.; Vanneste, L.

    1987-12-10

    The technical realization of particle detection at very low temperatures (4K) has made it possible to study for the first time the anisotropic ..cap alpha..-decay of oriented nuclei which have been produced, separated and implanted on line. The measured ..cap alpha..-angular distributions reveal surprising new results on nuclear aspects as well as in solid state physics. The nuclear structure information from these data questions the older ..cap alpha..-decay theoretical interpretation and urges for a reaxamination of the earliest work on anisotropic ..cap alpha..-decay.

  15. Line bisection task performance and resting EEG alpha power.

    PubMed

    Ciçek, Metehan; Nalçaci, Erhan; Kalaycioglu, Canan

    2003-06-01

    Neurologically normal subjects generally err to the left of veridical center when performing a line bisection task, a phenomenon termed "pseudoneglect." We hypothesized that resting electroencephalogram (EEG) alpha oscillations may show relationships with attentional mechanisms and give some clues about the underlying mechanisms of pseudoneglect. We recorded resting EEGs of 41 subjects and tested them with a paper-pencil line bisection task. Our results showed that line bisection scores of men (n=18) were less biased and their performance was higher compared to those of women (n=20), but these differences only approached significance. The eyes open resting EEG alpha power of women was significantly and positively correlated with their line bisection performance. In general, significant relationships were related to the left hand performance when the lines were presented in the left hemispace. Greater resting alpha power was correlated with lower absolute bisection score or, in other words, higher bisection performance. Greater alpha power also correlated with diminished leftward bisection bias (or reduced pseudo-neglect). The resting EEG alpha of men was weakly associated with bisection performance. Results discussed in terms of Kinsbourne's activation-orientation theory and Basar's view on brain oscillations.

  16. Anisotropic alpha emission from on-line separated isotopes

    SciTech Connect

    Wouters, J.; Vandeplassche, D.; van Walle, E.; Severijns, N.; Vanneste, L.

    1986-05-05

    A systematic on-line nuclear-orientation study of heavy isotopes using anisotropic ..cap alpha.. emission is reported for the first time. The anisotrophies recorded for /sup 199/At, /sup 201/At, and /sup 203/At are remarkably pronounced and strongly varying. At lower neutron number the ..cap alpha.. particles are more preferentially emitted perpendicularly to the nuclear-spin direction. This may be interpreted in terms of the high sensitivity of the ..cap alpha..-emission probability to changes in the nuclear shape.

  17. H-alpha profile observations of a limb flare with high temporal resolution

    NASA Astrophysics Data System (ADS)

    Graeter, M.

    1990-12-01

    The impulsive phase of a 1N/M2.0 limb flare on September 8, 1988 was observed in H-alpha with high temporal resolution. With an imaging spectrograph line profiles have been acquired every 2.3 sec. The temporal evolution in the blue and red wing has been correlated with hard X-ray data from HXRBS. It is shown that a prominent spike in the blue wing of H-alpha was delayed with respect to the corresponding hard X-ray burst by 7-8 sec. With the exception of the spike in the blue wing of H-alpha, the temporal development of the line profile is compatible with the predictions for nonthermal electron heating during the impulsive phase.

  18. K alpha line emission during solar X-ray bursts

    NASA Technical Reports Server (NTRS)

    Phillips, K. J. H.; Neupert, W. M.

    1973-01-01

    Calculations of K alpha line emission from S, Ar, Ca and Fe are presented. It is reported that on the basis of data for hard X-ray bursts, the flux during most impulsive, non-thermal events is likely to be weak, though for a few strong bursts, a flux of approximately 100 photons/cm/s may be expected. The amount of S K alpha emission particularly is sensitively dependent on the value of the lower energy bound of the non-thermal electron distribution, offering a possible means of determining this. Thermal K alpha emission is only significant for Fe ions. The calculated thermal K alpha radiation is much less than that observed during an intense soft X-ray burst. It is concluded that a detailed temperature structure for the emission source is required in order to explain the discrepancy.

  19. A study of the H-alpha line in X1735 - 444

    NASA Technical Reports Server (NTRS)

    Smale, Alan P.; Corbet, Robin H. D.

    1991-01-01

    Forty six optical spectra containing the H-alpha line of X1735 - 444, which were obtained over three nights in May 1987, were analyzed. Using a convolution method, a radial velocity curve was derived for the whole H-alpha line. Combining the spectroscopic results with an updated photometric ephemeris, the probable sites for H-alpha emission in X1735 - 444 were determined. Results of the analyses suggest that two distinct regions contribute to the observed profile in X-1735 - 444: (1) the peak emission, which is associated with the accretion stream of material passing between the companion and the compact object; and (2) the base emission, which is produced symmetrically in the outer accretion disk.

  20. ASYMMETRIC ABSORPTION PROFILES OF Ly{alpha} AND Ly{beta} IN DAMPED Ly{alpha} SYSTEMS

    SciTech Connect

    Lee, Hee-Won

    2013-08-01

    Damped Ly{alpha} systems observed in the quasar spectra are characterized by a high neutral hydrogen column density, N{sub HI} > 2 x 10{sup 20} cm{sup -2}. The absorption wing profiles are often fitted using the Voigt function due to the fact that the scattering cross section near the resonant line center is approximately described by the Lorentzian function. Since a hydrogen atom has infinitely many p states that participate in the electric dipole interaction, the cross section starts to deviate from the Lorentzian in an asymmetric way in the line wing regions. We investigate this asymmetry in the absorption line profiles around Ly{alpha} and Ly{beta} as a function of the neutral hydrogen column density N{sub HI}. In terms of {Delta}{lambda} {identical_to} {lambda} - {lambda}{sub {alpha}}, we expand the Kramers-Heisenberg formula around Ly{alpha} to find {sigma}({lambda}) {approx_equal} (0.5f{sub 12}){sup 2}{sigma}{sub T}({Delta}{lambda}/{lambda}{sub {alpha}}){sup -2}[1 + 3.792({Delta}{lambda}/{lambda}{sub {alpha}})], where f{sub 12} and {sigma}{sub T} are the oscillator strength of Ly{alpha} and the Thomson scattering cross section, respectively. In terms of {Delta}{lambda}{sub 2} {identical_to} {lambda} - {lambda}{sub {beta}} in the vicinity of Ly{beta}, the total scattering cross section, given as the sum of cross sections for Rayleigh and Raman scattering, is shown to be {sigma}({lambda}) {approx_equal} {sigma}{sub T}(0.5f{sub 13}){sup 2}(1 + R{sub 0})({Delta}{lambda}{sub 2}/{lambda}{sub {beta}}){sup -2}[1 - 24.68({Delta}{lambda}{sub 2}/{lambda}{sub {beta}})] with f{sub 13} and the factor R{sub 0} = 0.1342 being the oscillator strength for Ly{beta} and the ratio of the Raman cross section to Rayleigh cross section, respectively. A redward asymmetry develops around Ly{alpha}, whereas a blue asymmetry is obtained for Ly{beta}. The absorption center shifts are found to be almost proportional to the neutral hydrogen column density.

  1. A semiempirical atmosphere for alpha Tauri from neutral iron lines

    NASA Technical Reports Server (NTRS)

    Ramsey, L. W.

    1977-01-01

    A semiempirical model photosphere is constructed for the K5 III star Alpha Tau. The technique employed is based on measurements of the central fluxes in a series of lines in multiplets. Observations of four multiplets having a range in excitation potential yield the excitation temperature as a function of the optical depth in a reference line. If the temperature structure of an assumed starting model is changed to force agreement between the observed and predicted line source functions under the assumption that excitation and electron kinetic temperatures are equal, the final semiempirical model is cooler by 150 K in the outer layers and warmer by 150 K in deeper layers than the theoretical model with the parameters adopted for Alpha Tau.

  2. K alpha line emission during solar X-ray bursts

    NASA Technical Reports Server (NTRS)

    Phillips, K. J. H.; Neupert, W. M.

    1973-01-01

    The expected flux of K alpha line emission from sulfur, argon, calcium, and iron is calculated during both thermal and nonthermal solar X-ray events. Such emission is shown to be weak during the course of most of the nonthermal hard X-ray bursts that Kane and Anderson (1970) have observed. If Compton backscattering is significant at high energies, the flux is reduced still further for disk flares, but it is noted that the strong, near-limb burst of June 26 would have produced about 100 photons /sq cm/sec of sulfur and iron K alpha emission. The impulsive hard X-ray bursts may in general be too short-lived for much K alpha emission. It may be noted that sulfur K alpha emission in particular depends sensitively on the lower-energy limit of the nonthermal electron spectrum, assuming such a sharply defined boundary exists. During soft X-ray bursts, when temperatures of a few 10 to the 7th power K are obtained, K alpha emission from certain iron ions, specifically Fe XVIII-XXIII, may be important.

  3. Be Star Hα Line Profile Variability

    NASA Astrophysics Data System (ADS)

    Austin, S. J.; Dunlap, B.; Franklin, M.; Hoggard, T.; Hoskins, J. S.

    2004-12-01

    The monitoring of the spectroscopic variability of Be stars is crucial for testing Be star models. Motivated by this, a Be star monitoring project was developed for undergraduate student research involvement. We have been obtaining 0.8 Angstrom/pixel resolution Hα line profiles for several bright Be stars since 2003 June. These spectra were acquired using the UCA Fiber Fed Spectrograph used at the UCA Observatory and the Nubbin Ridge Observatory in Royal, AR. H-α line profiles, velocities, and variability are shown for Delta Sco, Chi Oph, Eta PsA, 48 Lib, and Upsilon Sgr (HD181615). Funding has been provided by the UCA University Research Council and the Arkansas Space Grant Consortium.

  4. Line profile asymmetries in chromospherically active stars

    NASA Technical Reports Server (NTRS)

    Dempsey, Robert C.; Bopp, Bernard W.; Strassmeier, Klaus G.; Granados, Arno F.; Henry, Gregory W.; Hall, Douglas S.

    1992-01-01

    A powerful, new probe of chromospheric activity, cross-correlation, has been developed and applied to a variety of stars. In this particular application, an entire CCD spectrum of an active star is correlated with the spectrum of a narrow-line, inactive star of similar spectral type and luminosity class. Using a number of strong lines in this manner enables the detection of absorption profile asymmetries at moderate resolution (lambda/Delta lambda about 40,000) and S/N 150:1. This technique has been applied to 14 systems mostly RS CVn's, with 10 not greater than nu sin i not greater than 50 km/s and P not less than 7 d. Distortions were detected for the first time in five systems: Sigma Gem, IM Peg, GX Lib, UV Crb, and Zeta And. Detailed modeling, incorporating both spectral line profiles and broad-band photometry, is applied to Sigma Gem. Profile asymmetries for this star are fitted by two high-latitude spots covering 5 percent of the stellar surface. The derived spot temperature of 3400 K is lower than found in previous studies. In addition, two well-known systems have been studied: HD 199178 and V711 Tau. Polar spots are found on both.

  5. DISCOVERY OF RED-SKEWED K {sub {alpha}} IRON LINE IN Cyg X-2 WITH SUZAKU

    SciTech Connect

    Shaposhnikov, Nikolai E-mail: Lev.Titarchuk@nrl.navy.mil E-mail: plaurent@cea.fr

    2009-07-10

    We report on the Suzaku observation of neutron star (NS) low-mass X-ray binary Cygnus X-2 which reveals a presence of the iron K {sub {alpha}} emission line. The line profile shows a significant red wing. This discovery increases the number of NS sources where red-skewed iron lines were observed and strongly suggests that this phenomenon is common not only in black holes but also in other types of accreting compact objects. We examine the line profile in terms of models which attribute its production to the relativistic effects due to reflection of X-ray radiation from a cold accretion disk and also as a result of the line formation in the extended wind/outflow configuration. Both models are able to adequately represent the observed line profile. We consider the results of line modeling in the context of subsecond variability. While we were unable to conclusively disqualify one of the models, we find that the wind paradigm has several advantages over the relativistic disk reflection model.

  6. Line profiles from discrete kinematic data

    NASA Astrophysics Data System (ADS)

    Amorisco, N. C.; Evans, N. W.

    2012-08-01

    We develop a method to extract the shape information of line profiles from discrete kinematic data. The Gauss-Hermite expansion, which is widely used to describe the line-of-sight velocity distributions extracted from absorption spectra of elliptical galaxies, is not readily applicable to samples of discrete stellar velocity measurements, accompanied by individual measurement errors and probabilities of membership. These include data sets on the kinematics of globular clusters and planetary nebulae in the outer parts of elliptical galaxies, as well as giant stars in the Local Group galaxies and the stellar populations of the Milky Way. We introduce two-parameter families of probability distributions describing symmetric and asymmetric distortions of the line profiles from Gaussianity. These are used as the basis of a maximum likelihood estimator to quantify the shape of the line profiles. Tests show that the method outperforms a Gauss-Hermite expansion for discrete data, with a lower limit for the relative gain of ≈2 for sample sizes N ≈ 800. To ensure that our methods can give reliable descriptions of the shape, we develop an efficient test to assess the statistical quality of the obtained fit. As an application, we turn our attention to the discrete velocity data sets of the dwarf spheroidals (dSphs) of the Milky Way. Sculptor and Fornax have data sets of ≳1000 line-of-sight velocities of probable member stars. In Sculptor, the symmetric deviations are everywhere consistent with velocity distributions more peaked than Gaussian. In Fornax, instead, there is an evolution in the symmetric deviations of the line profile from a peakier to more flat-topped distribution on moving outwards. Although the data sets for Carina and Sextans are smaller, they still comprise several hundreds of stars. Our methods are sensitive enough to detect evidence for velocity distributions more peaked than Gaussian. These results suggest a radially biased orbital structure for the

  7. A comparison of lyman alpha and He lambda 10830 line structures and variations in early-type star atmospheres

    NASA Technical Reports Server (NTRS)

    Meisel, D. D.

    1974-01-01

    Line profiles were first obtained at maximum velocity separation of the spectroscopic binary Spica (alpha Vir), and then high resolution spectrophotometric images of selected features in the 1.1 micron spectrum of Comet Kohoutek were obtained in order to gain insight into the structures and variations in early-type star atmospheres.

  8. Effects of excitation laser wavelength on Ly-{alpha} and He-{alpha} line emission from nitrogen plasmas

    SciTech Connect

    Harilal, S. S.; Miloshevsky, G. V.; Sizyuk, T.; Hassanein, A.

    2013-01-15

    Laser-produced nitrogen plasmas emitting radiation at 2.48 nm (Ly-{alpha}) and 2.88 nm (He-{alpha}) are considered potential efficient sources for water-window (WW) microscopy. The atomic and optical properties of nitrogen plasma and influence of the laser wavelength on the line emission in the WW range are investigated. It is found that the optimal temperatures for maximum emission from Ly-{alpha} and He-{alpha} spectral lines are 40-60 eV and 80-100 eV, respectively. The WW line emission and the conversion efficiency (CE) are estimated for three distinct Nd:YAG laser wavelengths (1064 nm, 532 nm, and 266 nm). The calculated CEs are compared with experimentally observed CE values. It is found that 1064 nm wavelength provides the highest CE from laser to Ly-{alpha} and He-{alpha} radiation.

  9. Non-LTE Inversion of Line Profiles

    NASA Astrophysics Data System (ADS)

    Socas-Navarro, H.; Ruiz Cobo, B.; Trujillo Bueno, J.

    1998-11-01

    In this paper we address the problem of the non-LTE (NLTE) inversion of line profiles by means of a nonlinear least-squares minimization procedure combined with very efficient multilevel transfer methods. Our approach is based on the concept of response functions, which measure the first-order response of the emergent profiles to changes in the atmospheric conditions. We introduce the fixed departure coefficients (FDC) approximation in order to compute these response functions in a fast and straightforward manner. The accuracy of this approximation is checked comparing FDC response functions with those obtained from full NLTE computations. An NLTE inversion code based on these response functions has been developed and extensively tested. Reference synthetic profiles, similar to those expected from real observations, are given as input to the inversion algorithm and the recovered models are shown to be compatible with the reference models within the error bars. Our NLTE inversion code thus provides a new tool for the investigation of the chromospheres of the Sun and other stars.

  10. Toxicities of trichosanthin and alpha-momorcharin, abortifacient proteins from Chinese medicinal plants, on cultured tumor cell lines.

    PubMed

    Tsao, S W; Ng, T B; Yeung, H W

    1990-01-01

    Trichosanthin and alpha-momorcharin are abortifacient proteins extracted from Chinese medicinal herbs. Study of their in vitro cytotoxicities showed that the two proteins selectively injured choriocarcinoma and melanoma cells. Hepatoma cells represented the most resistant cell line among the various cell lines investigated. Cytotoxicity profiles of trichosanthin and alpha-momorcharin differed from those of anti-cancer drugs which interfere with DNA metabolism such as cisplatin, methotrexate and 5-fluorouracil. Radioactive precursor incorporation studies suggested that the two abortifacient proteins inhibited cellular protein synthesis. The marked decrease in secretion of human chorionic gonadotrophin and progesterone by choriocarcinoma cells after treatment with the proteins could be attributed mainly to loss of cells.

  11. The sensitivity of H alpha profiles to rapid electron beam fluctuations

    NASA Technical Reports Server (NTRS)

    Canfield, Richard C.; Gayley, Kenneth G.

    1986-01-01

    In order to understand the temporal relationship between H alpha and hard X-ray emission predicted by the nonthermal electron thick target model of impulsive-phase energy transport the time-dependent theoretical H alpha profiles were computed for the dynamic model atmospheres of Fisher, Canfield, and McClymont, which simulate the effects of an impulsively initiated power-law beam of electrons. On the basis of the physical analysis it was expected that a very rapid H alpha response to an instantaneous increase in the flux of a nonthermal deka-keV electron beam, as compared to the timescale associated with the propagation of these electrons over characteristic flare coronal loop spatial scales. It was concluded that observational efforts to test the thick target nonthermal electron model through detection of impulsive H alpha brightenings associated with impulsive hard X-ray or microwave bursts should initially focus attention on the H alpha line center. Additional simultaneous blue-wing measurements will have substantial diagnostic potential.

  12. A long-term study of H(alpha) line variations in FK Comae Berenices

    NASA Technical Reports Server (NTRS)

    Welty, Alan D.; Ramsey, Lawrence W.; Iyengar, Mrinal; Nations, Harold L.; Buzasi, Derek L.

    1993-01-01

    We present observations of H(alpha) V/R ratio variations in FK Comae Berencies obtained during several observing seasons from 1981 to 1992. The raw H(alpha) emission profile is always observed to be double peaked due to the stellar-absorption component. During the most years the V/R ratio varies regularly with the period of the photometric light curve. The V/R periodicity is most obvious when time spans no longer than several stellar rotations are considered. We propose that the bulk of the emission component of the H(alpha) line arises in corotating circumstellar material that may be similar to that of a quiescent solar prominence. The lifetime of these structures appears to be on the order of weeks. A weak contribution from a circumstellar disk is evident and chromospheric emission may also be present. The appearance or disappearance of circumstellar structures over periods longer than a few weeks, or the total absence of such structures, blurs the more regular variations in H(alpha) seen over short time scales. Other more stochastic activity, such as flares, also clearly occurs. Phase shifts of the V/R ratio from year to year rule out the hypothesis that mass tranfer in a close binary system is responsible for the V/R variations.

  13. Effects of tumor necrosis factor-alpha (TNF alpha) in epidermal keratinocytes revealed using global transcriptional profiling.

    PubMed

    Banno, Tomohiro; Gazel, Alix; Blumenberg, Miroslav

    2004-07-30

    Identification of tumor necrosis factor-alpha (TNF alpha) as the key agent in inflammatory disorders, e.g. rheumatoid arthritis, Crohn's disease, and psoriasis, led to TNF alpha-targeting therapies, which, although avoiding many of the side-effects of previous drugs, nonetheless causes other side-effects, including secondary infections and cancer. By controlling gene expression, TNF alpha orchestrates the cutaneous responses to environmental damage and inflammation. To define TNF alpha action in epidermis, we compared the transcriptional profiles of normal human keratinocytes untreated and treated with TNF alpha for 1, 4, 24, and 48 h by using oligonucleotide microarrays. We found that TNF alpha regulates not only immune and inflammatory responses but also tissue remodeling, cell motility, cell cycle, and apoptosis. Specifically, TNF alpha regulates innate immunity and inflammation by inducing a characteristic large set of chemokines, including newly identified TNF alpha targets, that attract neutrophils, macrophages, and skin-specific memory T-cells. This implicates TNF alpha in the pathogenesis of psoriasis, fixed drug eruption, atopic and allergic contact dermatitis. TNF alpha promotes tissue repair by inducing basement membrane components and collagen-degrading proteases. Unexpectedly, TNF alpha induces actin cytoskeleton regulators and integrins, enhancing keratinocyte motility and attachment, effects not previously associated with TNF alpha. Also unanticipated was the influence of TNF alpha upon keratinocyte cell fate by regulating cell-cycle and apoptosis-associated genes. Therefore, TNF alpha initiates not only the initiation of inflammation and responses to injury, but also the subsequent epidermal repair. The results provide new insights into the harmful and beneficial TNF alpha effects and define the mechanisms and genes that achieve these outcomes, both of which are important for TNF alpha-targeted therapies.

  14. Magnetic Turbulence and Line Broadening in Simulations of Lyman-Alpha Absorption

    NASA Astrophysics Data System (ADS)

    Gurvich, Alex; Burkhart, Blakesley K.; Bird, Simeon

    2016-01-01

    We use the Illustris cosmological AREPO simulations to study the effects of gas turbulence and magnetic fields on measurements from the Lyman-Alpha forest. We generate simulated Lyman-Alpha spectra and plot the distributions of Column Density (CDD) and Doppler Width (b) both by adhering to the canonical method of fitting Voigt profiles to absorption lines and by directly measuring the column density and equivalent widths from snapshot data .We investigate the effects of additional unresolved gas turbulence in Illustris by adding an additional broadening term to the line profiles to mimic turbulent broadening. When we do this, we find a measurable effect in the CDD and an offset in the mean of the b distribution corresponding to the additional turbulence. We also compare different MHD runs in AREPO we find that the CDD can measurably differentiate between magnetic seed field at redshifts as low as z=0.1, but we do not find that the b distribution is affected at a detectable level. Our work suggests that the effects of turbulence and magnetic fields from z=2-0.1 can potentially be measured with these diagnostics. This work was supported in part by the NSF REU and DoD ASSURE programs under NSF grant no. 1262851 and by the Smithsonian Institution.

  15. Dayglow Emission Line Profiles from the Outer Planets Cycle 4-MED Part 2 OF 5414

    NASA Astrophysics Data System (ADS)

    Clarke, John

    1994-01-01

    Recent IUE observations of the H Ly alpha emission line profilefrom Jupiter's dayglow and aurora reveal a substantial line broadening,implying that the observed high brightness is due to resonantscattering of solar emission with a broad line rather than chargedparticle excitation. This may reflect highly energetic processesproducing a 5-10 km/sec suprathermal population of H atoms in Jupiter'supper atmosphere, which in turn may be related to the unresolved questionof the high exospheric temperatures of 400-1200 K detected on all 4 giantplanets during the Voyager encounters. It is clear that if the bright HLy alpha emissions from the outer planets are due mainly to resonantscattering of solar and interplanetary emissions, as observedon Jupiter and Saturn from long term correlations with the solarLy alpha flux, then the lines from all 4 planets must be broad toexplain the observed high albedos. The H Ly alpha lineshapes providea discriminant between the processes of resonant scattering andcharged particle excitation. We propose to obtain high signal to noiseH Ly alpha line profile measurements from Saturn, Uranus, and Neptuneto resolve the questions about the excitation processes for the brightairglow emissions.SATURN PART ONLY - NEPTUNE AND URANUS IN ORIGIAL PROP (5414).

  16. Consistency of spherical, gravity-dominated dynamics with quasar high-ionization emission-line profiles

    NASA Technical Reports Server (NTRS)

    Kallman, T. R.; Wilkes, B. J.; Krolik, J. H.; Green, Richard

    1993-01-01

    Line profile data are used to test a simple kinematic model - spherically symmetric gravitational free fall - in which the number of free parameters is limited by requiring physical self-consistency. The predictions of this model are fitted to high-resolution spectra of the stronger rest-frame UV emission lines in 12 quasars with z of about 2. It is found that if all the lines are radiated predominantly from the illuminated faces of the emission-line clouds, the profiles of Ly-alpha, N V 1240 A, and C IV 1549 A can be simultaneously well fitted with very similar parameters for all 12 quasars. It is concluded that spherically symmetric gravitational free fall does not correctly describe the dynamics of quasar broad emission-line regions.

  17. Metallic line profiles of the AOV star Vega

    NASA Technical Reports Server (NTRS)

    Fletcher, J. Murray; Gulliver, Austin F.; Adelman, Saul J.; Crowley, Charles R.

    1990-01-01

    High dispersion ultrahigh signal to noise Reticon spectra of Vega were obtained with the coude spectrograph of the 1.2 m telescope. A mean signal to noise ratio of 2500 over the spectral region lambdas from 3825 to 5435 was achieved. Examination of the line profiles confirmed the presence of two different types of profiles which were previously seen in IIIaJ and lower signal to noise Reticon spectra. The profiles of the strong lines are essentially classical rotational profiles with enhanced wings which are slightly stronger than expected while those of weak lines are clearly flat-bottomed resulting in a trapezoidal appearance. A few possible theoretical explanations are presented.

  18. FFT Deconvultion of Be Star Hα Line Profiles

    NASA Astrophysics Data System (ADS)

    Austin, S. J.

    2005-12-01

    We have been monitoring the spectroscopic variability of Be stars using the UCA Fiber Fed Spectrograph. The spectra are 0.8 Angstrom/pixel resolution of the Hα line. The observed line profiles are a convolution of the actual profile and the instrumental profile. A Fast Fourier Transform (FFT) method has been used to deconvolve the observed profiles, given the instrument profile obtained by observing the narrow lines from the HgNe wavelength calibration lamp. The long-term monitoring of the spectroscopic variability of Be stars is crucial for testing the various Be star models. Deconvolved H-α line profiles, velocities, and variability are shown for gamma Cas, delta Sco, chi Oph, eta PsA, 48 Lib, and upsilon Sgr (HD181615). Funding has been provided by the UCA University Research Council and the Arkansas Space Grant Consortium.

  19. Profiles of emission lines in Be stars.

    NASA Technical Reports Server (NTRS)

    Huang, S. S.

    1972-01-01

    Study of the broadening functions resulting from a gaseous ring in circular motion around a star according to Kepler's law. When the distribution in the gaseous ring has a circular symmetry in the equatorial plane, the broadening profile is related to the surface density distribution along the radius by an integral equation which can be transformed into the Abel integral equation and solved analytically. Profiles corresponding to gaseous rings with a uniform density distribution but different widths are used to illustrate the general properties of the profile broadened by the gaseous ring in circular motion. The emission profile has also been studied for cases in which the circular motion does not follow Kepler's law.

  20. Profiled spectral lines generated in the field of Kerr superspinars

    SciTech Connect

    Schee, Jan; Stuchlík, Zdenek E-mail: zdenek.stuchlik@fpf.slu.cz

    2013-04-01

    String Theory suggests existence of primordial Kerr superspinars, extremely compact objects with external spacetime described by the Kerr naked singularity geometry. The primordial Kerr superspinars have to be converted to a near-extreme black hole due to accretion, but they could survive to the era of highly redshifted quasars. We study the shape of the profiled spectral lines generated by radiating rings or the innermost parts of Keplerian discs orbiting the Kerr superspinars. Influence of the superspinar surface location on the profiled lines is also considered. We demonstrate strong difference of the character of the profiled lines generated by radiating rings for all values of the superspinar spin and all values of the inclination angles of the observer when compared to those generated in the field of Kerr black holes. For small and mediate inclination angles there are large quantitative differences in the extension and position of the lines. For large inclination angles even strong qualitative difference appears as the profiled lines have a clear doubled character. The smaller, redshifted region of the profiled line is related to the photons reaching the regions near the superspinar surface. Strong differences are obtained also for profiled lines generated by the innermost parts of Keplerian discs especially in the shape of the line. The influence of the superspinar surface location is reflected in the intermediate parts of the the profiled lines. The line profiles can give a clear signature of the presence of a Kerr superspinar and in principle enable estimates of its surface location since the signatures of the superspinar surface location are of different character as those corresponding to the presence of the black hole horizon.

  1. ANALYSIS OF CORONAL GREEN LINE PROFILES: EVIDENCE OF EXCESS BLUESHIFTS

    SciTech Connect

    Raju, K. P.; Chandrasekhar, T.; Ashok, N. M. E-mail: chandra@prl.res.in

    2011-08-01

    Coronal green line (Fe XIV 5303 A) profiles were obtained from Fabry-Perot interferometric observations of the solar corona during the total solar eclipse of 2001 June 21 from Lusaka, Zambia. The instrumental width is about 0.2 A and the spectral resolution is about 26,000. About 300 line profiles were obtained within a radial range of 1.0-1.5 R{sub sun} and a position angle coverage of about 240{sup 0}. The line profiles were fitted with single Gaussians, and their intensities, Doppler velocities, and line widths were obtained. Also obtained were the centroids of the line profiles, which give a measure of line asymmetry. The histograms of Doppler velocity show excess blueshifts, while the centroids reveal a predominant blue wing in the line profiles. It was found that the centroids and the Doppler velocities are highly correlated. This points to the presence of multiple components in the line profiles, with an excess of blueshifted components. We then obtained the (Blue-Red) wing intensities, which clearly reveal the secondary components, the majority of which are blueshifted. This confirms that the coronal green line profiles often contain multicomponents with excess blueshifts, which also depend on the solar activity. The magnitude of the Doppler velocity of the secondary components is in the range of 20-40 km s{sup -1} and shows an increase toward the poles. Possible explanations of the multicomponents are the type II spicules that were recently found to be important to coronal heating or the nascent solar wind flow, but the cause of the blue asymmetry in the coronal lines above the limb remains unclear.

  2. SIMULTANEOUS ULTRAVIOLET AND OPTICAL EMISSION-LINE PROFILES OF QUASARS: IMPLICATIONS FOR BLACK HOLE MASS DETERMINATION

    SciTech Connect

    Ho, Luis C.; Dong Xiaobo; Goldoni, Paolo; Ponti, Gabriele; Greene, Jenny E.

    2012-07-20

    The X-shooter instrument on the Very Large Telescope was used to obtain spectra of seven moderate-redshift quasars simultaneously covering the spectral range {approx}3000 A to 2.5 {mu}m. At z Almost-Equal-To 1.5, most of the prominent broad emission lines in the ultraviolet to optical region are captured in their rest frame. We use this unique data set, which mitigates complications from source variability, to intercompare the line profiles of C IV {lambda}1549, C III] {lambda}1909, Mg II {lambda}2800, and H{alpha} and evaluate their implications for black hole (BH) mass estimation. We confirm that Mg II and the Balmer lines share similar kinematics and that they deliver mutually consistent BH mass estimates with minimal internal scatter ({approx}<0.1 dex) using the latest virial mass estimators. Although no virial mass formalism has yet been calibrated for C III], this line does not appear promising for such an application because of the large spread of its velocity width compared to lines of both higher and lower ionization; part of the discrepancy may be due to the difficulty of deblending C III] from its neighboring lines. The situation for C IV is complex and, because of the limited statistics of our small sample, inconclusive. On the one hand, slightly more than half of our sample (4/7) have C IV line widths that correlate reasonably well with H{alpha} line widths, and their respective BH mass estimates agree to within {approx}0.15 dex. The rest, on the other hand, exhibit exceptionally broad C IV profiles that overestimate virial masses by factors of 2-5 compared to H{alpha}. As C IV is widely used to study BH demographics at high redshifts, we urgently need to revisit our analysis with a larger sample.

  3. Identification of potential target genes of ROR-alpha in THP1 and HUVEC cell lines.

    PubMed

    Gulec, Cagri; Coban, Neslihan; Ozsait-Selcuk, Bilge; Sirma-Ekmekci, Sema; Yildirim, Ozlem; Erginel-Unaltuna, Nihan

    2017-04-01

    ROR-alpha is a nuclear receptor, activity of which can be modulated by natural or synthetic ligands. Due to its possible involvement in, and potential therapeutic target for atherosclerosis, we aimed to identify ROR-alpha target genes in monocytic and endothelial cell lines. We performed chromatin immunoprecipitation (ChIP) followed by tiling array (ChIP-on-chip) for ROR-alpha in monocytic cell line THP1 and endothelial cell line HUVEC. Following bioinformatic analysis of the array data, we tested four candidate genes in terms of dependence of their expression level on ligand-mediated ROR-alpha activity, and two of them in terms of promoter occupancy by ROR-alpha. Bioinformatic analyses of ChIP-on-chip data suggested that ROR-alpha binds to genomic regions near the transcription start site (TSS) of more than 3000 genes in THP1 and HUVEC. Potential ROR-alpha target genes in both cell types seem to be involved mainly in membrane receptor activity, signal transduction and ion transport. While SPP1 and IKBKA were shown to be direct target genes of ROR-alpha in THP1 monocytes, inflammation related gene HMOX1 and heat shock protein gene HSPA8 were shown to be potential target genes of ROR-alpha. Our results suggest that ROR-alpha may regulate signaling receptor activity, and transmembrane transport activity through its potential target genes. ROR-alpha seems also to play role in cellular sensitivity to environmental substances like arsenite and chloroprene. Although, the expression analyses have shown that synthetic ROR-alpha ligands can modulate some of potential ROR-alpha target genes, functional significance of ligand-dependent modulation of gene expression needs to be confirmed with further analyses. Copyright © 2017 Elsevier Inc. All rights reserved.

  4. The Mg II line profile in the Seyfert galaxy NGC 4151 - A new outflowing component

    NASA Technical Reports Server (NTRS)

    Leech, Kieron J.; Penston, M. V.; Snijders, M. A. J.; Gull, T. R.

    1987-01-01

    This paper examines the Mg II 2795-2802 A doublet in the Seyfert galaxy NGC 4151 at a higher resolution than has previously been used, searching for velocity systems in absorption and emission. Evidence is presented for a new, narrow, outflowing absorption system in Mg II having a velocity of 825 km/s relative to the sun, and -165 km/s relative to the systemic velocity of NGC 4151. This feature is not present in Ly-alpha or C IV and possible explanations for this are considered. For the Mg II and C IV lines, a model decomposition of the line profile is presented.

  5. The Mg II line profile in the Seyfert galaxy NGC 4151: A new outflowing component

    NASA Technical Reports Server (NTRS)

    Leech, Kieron J.; Penston, M. V.; Snijders, M. A. J.; Gull, T.

    1986-01-01

    The Mg II 2795, 2802A doublet in the Seyfert galaxy NGC 4151 was examined to search for velocity systems in absorption and emission. Evidence for a narrow, outflowing absorption system in Mg II having a velocity of +825 km/sec relative to the Sun, -165 km/sec relative to the systemic velocity of NGC 4151 is presented. This feature is not present in Ly alpha or C IV and possible explanations for this are considered. For the Mg II and C IV lines a model decomposition of the line profile is shown.

  6. Discovery of the Red-Skewed K-alpha Iron Line in Cyg X-2 with Suzaku

    NASA Technical Reports Server (NTRS)

    Shaposhnikov, Nikolai; Titarchuk, Lev; Laurent, Philippe

    2008-01-01

    We report on the Suzaku observation of neutron star low-mass X-ray binary Cygnus X-2 which reveals strong iron K-alpha emission line. The line profile shows a prominent red wing extending down to 4 keV. This discovery increases the number of neutron star sources where red-skewed iron lines were observed and strongly suggests that this phenomenon is common not only in black holes but also in other types of compact objects. We examine the line profile by fitting it with the model which attributes its production to the relativistic effects due to disk reflection of X-ray radiation. We also apply an alternative model where the red wing is a result of down-scattering effect of the first order with respect to electron velocity in the wind outflow. Both models describe adequately the observed line profile. However, the X-ray variability in a state similar to that in the Suzaku observation which we establish by analysing RXTE observation favors the wind origin of the line formation.

  7. USDA, ARS beit alpha cucumber inbred backcross line population

    USDA-ARS?s Scientific Manuscript database

    A series of Beit Alpha cucumber (Cucumis sativus L.) market type inbred backcross were released in January 2010 by the Agricultural Research Service, United States Department of Agriculture. The IBL were made available to U.S. cucumber breeders to supply a source from which they may develop Beit Al...

  8. Explaining the unusual line profiles of SN 2006gy

    NASA Astrophysics Data System (ADS)

    Chugai, Nikolai N.

    2017-02-01

    This paper explores the origin of the enigmatic line profiles of the extremely luminous Type IIn supernova, SN 2006gy, on day 96. Among the conceivable possibilities, the most preferred is the model that suggests there are holes in the optically thick cool dense shell (CDS). The line radiation emitted at the inner side of the opaque CDS escapes through the holes, thus producing an unusual line profile with the emission shifted redward. The holes could emerge as a result of the vigorous Rayleigh-Taylor instability, leading to the CDS fragmentation. The model light curve with the CDS fragmentation is shown to be consistent with the SN 2006gy bolometric light curve.

  9. Effects of dust scattering on interstellar jet line profiles

    NASA Astrophysics Data System (ADS)

    Calvet, N.; Canto, J.; Binette, L.; Raga, A. C.

    1992-04-01

    The effect of scattering by particles in a stationary medium surrounding a source is to in velocity the intrinsic gaussian profile of the source. The and strength of the wings depend oi dust properties and on the optical depth of the medium. Theoretical models can be used to estimate the of thejet to the line of sight, the source velocity, and the optical depth towards the source. We propose that the differences between [S II] and Ha line profiles in the jets associated with HH 34 and HH 47 are due to different optical depths to the line emitting regions, which could be due to different sizes for regions. The effects of scattering in reddening determinations that assume only attenuation of the light of the source are discussed. It is found that optical depth determined by assuming only attenuation is smaller than the actual optical depth of the region. Key : DUST - HERBIG-HARO OBJECTh - LINE PROFILE - RADIATION TRANSFER

  10. Dislocation Effects on the Diffraction Line Profiles from Nanocrystalline Domains

    NASA Astrophysics Data System (ADS)

    Leonardi, Alberto; Scardi, Paolo

    2016-12-01

    A Pd nano-polycrystalline microstructure was simulated by molecular dynamics, including edge or screw dislocations in one of the 50 grains, so as to produce a realistic model of nanocrystalline domain with line defect. The same crystalline domain was also studied, with or without line defects, as a free-standing, isolated nanocrystal. Atomic coordinates of the selected domain were used to generate powder patterns by means of the Debye scattering equation, and these patterns were used as "experimental" data to test existing methods of line profile analysis in controlled condition, i.e., with known type and density of defects. Results show that the Krivolgaz-Wilkens theory of dislocation line broadening qualitatively agrees with the MD model, but errors can be larger than 50 pct. A critical issue arises from the instability of the Krivolgaz-Wilkens model when all line profile parameters are simultaneously refined: reasonable results can be obtained by fixing or restricting some parameters.

  11. Theory of satellite structures on spectral-line profiles.

    NASA Technical Reports Server (NTRS)

    Atakan, A. K.; Jacobson, H. C.

    1973-01-01

    A systematic comparison with experiment of various explanations for the problem of satellite-band formation on spectral-line profiles was initiated. The experiments were performed under a variety of conditions in an effort to construct a consistent model of entire line shapes. A composite theory is detailed which is the result of the insights of many individuals. The calculations indicate that the main features of the problem, the line, the high-intensity red satellites, and the blue satellite can be described simultaneously. The results also indicate that widely different potentials can lead to very similar line profiles. Ancillary conclusions are presented concerning the role of Lennard-Jones potentials in line-shape calculations.

  12. Profiles of the spectral lines formed in stochastic multicomponent atmosphere

    NASA Astrophysics Data System (ADS)

    Nikoghossian, A. G.; Mouradian, Z.

    2000-08-01

    An analytical procedure is explored to construct the profiles of the spectral lines formed in a stochastic multicomponent atmosphere. A model one- dimensional problem is solved for the atmospheres in both local thermodynamic equilibrium (LTE) and non-LTE. The results previously obtained by the authors for the LTE atmosphere are generalized to include, in particular, correlations of the random variations in the physical properties of the structural elements. It is shown that the stochastic multicomponent atmosphere may produce a kind of double-peaked profile, which is usually associated with the multiple scattering effects. The problem of the line formation in a stochastic non- LTE atmosphere is considered, assumpting the complete redistribution over frequencies with allowance for the absorption in continuum. For the line profile, a closed- form analytical expression is derived. The computed profiles are compared with those for an homogeneous deterministic atmosphere with preliminarily averaged physical properties. This allows us to conclude that the discrepancy between the line profiles relevant to these two cases may become significant, whereas the normalized profiles are fairly close to each other.

  13. LINE PROFILE ASYMMETRIES AND THE CHROMOSPHERIC FLARE VELOCITY FIELD

    SciTech Connect

    Kuridze, D.; Mathioudakis, M.; Kennedy, M.; Keenan, F. P.; Simões, P. J. A.; Voort, L. Rouppe van der; Fletcher, L.; Carlsson, M.; Jafarzadeh, S.; Allred, J. C.; Kowalski, A. F.; Graham, D.

    2015-11-10

    The asymmetries observed in the line profiles of solar flares can provide important diagnostics of the properties and dynamics of the flaring atmosphere. In this paper the evolution of the Hα and Ca ii λ8542 lines are studied using high spatial, temporal, and spectral resolution ground-based observations of an M1.1 flare obtained with the Swedish 1 m Solar Telescope. The temporal evolution of the Hα line profiles from the flare kernel shows excess emission in the red wing (red asymmetry) before flare maximum and excess in the blue wing (blue asymmetry) after maximum. However, the Ca ii λ8542 line does not follow the same pattern, showing only a weak red asymmetry during the flare. RADYN simulations are used to synthesize spectral line profiles for the flaring atmosphere, and good agreement is found with the observations. We show that the red asymmetry observed in Hα is not necessarily associated with plasma downflows, and the blue asymmetry may not be related to plasma upflows. Indeed, we conclude that the steep velocity gradients in the flaring chromosphere modify the wavelength of the central reversal in the Hα line profile. The shift in the wavelength of maximum opacity to shorter and longer wavelengths generates the red and blue asymmetries, respectively.

  14. On the existence of oscillations in solar filaments observed in H alpha and C IV lines

    NASA Technical Reports Server (NTRS)

    Schmieder, B.; Malherbe, J. M.; Mein, P.; Tandberg-Hanssen, E.

    1986-01-01

    Time sequence observations of filaments in both the H alpha line and the 1548 A C IV line were analyzed with the Fourier transform technique in the frequency range (1 - 10 mHz). No oscillation is detected in filaments except at the footpoints where a steady velocity gradient is large. The energy is probably due to convective motions rather than pressure oscillations.

  15. Stark broadening of high-principal-quantum-number n-alpha lines of hydrogen.

    NASA Technical Reports Server (NTRS)

    Lasalle, T. R.; Nee, T.-J.; Griem, H. R.

    1973-01-01

    High n-alpha lines (transitions n + 1 to n) with quantum numbers n between 50 and 250 have been observed emanating from galactic H II regions where the electron density and temperature are about 1000/cu cm and 1 eV, respectively. High n-alpha lines have not previously been seen in the laboratory where fairly homogeneous plasmas may be produced and relatively precise measurements of electron densities and temperatures can be made. The present work describes experiments where the first members of the hydrogen line series with lower states n = 10, 11, 12, and 13 have been detected in a laboratory plasma. The width of the 12-alpha line at 88.7 microns could be measured and was consistent with calculated broadening from elastic electron collisions and quasi-static ion effects.

  16. Transcriptional profiling of lymphoblast lines from subjects with panic disorder.

    PubMed

    Philibert, Robert A; Crowe, Raymond; Ryu, Gi-Yung; Yoon, Jae-Geun; Secrest, Dianna; Sandhu, Harinder; Madan, Anup

    2007-07-05

    In attempts to isolate genetic vulnerability factors for panic disorder (PD), a number of investigators have used genome-wide linkage or association analyses. But these attempts have been only modestly successful which suggests that alternative approaches may be needed to define the biology of PD. Therefore, using recently developed genome-wide gene expression profiling, we explored whether transcriptional signatures associated with PD are present in lymphoblast cell line. The expression of 2,469 transcripts in lymphoblast cell lines from 16 subjects was arithmetically increased in every line and significantly increased overall and 354 transcripts was arithmetically decreased in every cell line and significantly decreased overall as compared to those lymphoblast lines from 17 subjects without a history of behavioral illness. Further sex specific analyses showed that in those 10 lines derived from female probands, the expression of a further 67 transcripts was arithmetically increased in every line and significantly increased overall and a further 332 transcripts was arithmetically decreased in every cell line and significantly decreased. Conversely, in cell lines from the six male probands, the expression of an additional 212 was arithmetically increased in every line and significantly increased overall and a further 332 transcripts was arithmetically decreased in every cell line. We conclude that lymphoblast cell lines derived from subjects with PD have significant, partially sex dependent changes in gene transcription. Further studies are necessary to correlate these changes in these hemopoetically derived cells with those changes postulated to occur in the CNS in association with PD.

  17. The locations of Alpha-2 Herculis and Alpha-2 Scorpii along the line of sight. [spectrum analysis for stellar location determination

    NASA Technical Reports Server (NTRS)

    Bernat, A. P.; Bruhweiler, F. C.; Kondo, Y.; Van Der Hucht, K. A.

    1978-01-01

    The theory of line formation along the line of sight to the visual companions of M stars undergoing spherically symmetric mass loss is developed. The theory is then used to determine the position of the companions relative to the primary. It is found that Alpha-2 Her is 1470 AU further along the line of sight than Alpha-1 Her for an adopted distance of 150 pc; Alpha-2 Sco is 420 AU closer than Alpha-1 Sco for an adopted distance of 185 pc.

  18. Calculation of quasi-static helium triplet diffuse line profiles

    NASA Technical Reports Server (NTRS)

    Scott, C. D.

    1972-01-01

    Calculated spectral line profiles (intensity distributions) of the helium triplet diffuse series were obtained using the quasi-static approximation for ions and electrons. In these calculations, Doppler broadening, although negligible in most of the cases, was included as a device to avoid singularities. Plots and tabulations of the calculated profiles are presented, in addition to a discussion of the computational procedure and the validity of the calculations.

  19. Velocity profiles of high-excitation molecular hydrogen lines

    NASA Technical Reports Server (NTRS)

    Moorhouse, A.; Brand, P. W. J. L.; Geballe, T. R.; Burton, M. G.

    1990-01-01

    Profiles of three lines of molecular hydrogen near 2.2 microns, originating from widely spaced energy levels, have been measured at a resolution of 32 km/s at Peak 1 in the Orion molecular outflow. The three lines, 1 - 0 S(1), 2 - 1 S(1), and 3 - 2 S(3), are found to have identical profiles. This result rules out any significant contribution to the population of the higher energy levels of molecular hydrogen at Peak 1 by fluorescence, and is generally consistent with emission from multiple J-type shocks.

  20. Velocity profiles of high-excitation molecular hydrogen lines

    NASA Technical Reports Server (NTRS)

    Moorhouse, A.; Brand, P. W. J. L.; Geballe, T. R.; Burton, M. G.

    1990-01-01

    Profiles of three lines of molecular hydrogen near 2.2 microns, originating from widely spaced energy levels, have been measured at a resolution of 32 km/s at Peak 1 in the Orion molecular outflow. The three lines, 1 - 0 S(1), 2 - 1 S(1), and 3 - 2 S(3), are found to have identical profiles. This result rules out any significant contribution to the population of the higher energy levels of molecular hydrogen at Peak 1 by fluorescence, and is generally consistent with emission from multiple J-type shocks.

  1. DNA profiling and characterization of animal cell lines.

    PubMed

    Stacey, Glyn N; Byrne, Ed; Hawkins, J Ross

    2014-01-01

    The history of the culture of animal cell lines is littered with published and much unpublished experience with cell lines that have become switched, mislabelled, or cross-contaminated during laboratory handling. To deliver valid and good quality research and to avoid waste of time and resources on such rogue lines, it is vital to perform some kind of qualification for the provenance of cell lines used in research and particularly in the development of biomedical products. DNA profiling provides a valuable tool to compare different sources of the same cells and, where original material or tissue is available, to confirm the correct identity of a cell line. This chapter provides a review of some of the most useful techniques to test the identity of cells in the cell culture laboratory and gives methods which have been used in the authentication of cell lines.

  2. [Apoptosis of mesenchymal cell line MBA-1 induced by core binding factor alpha 1].

    PubMed

    Liu, Min; Zhou, Hou-de; He, Yu-lin; Xie, Hui; Liao, Er-yuan

    2006-02-01

    To investigate the effect of two core binding factors alpha 1 (Cbfa1) isfroms (Cbfa1/P56 and Cbfa1/P57) on the apoptosis of mesenchymal cell line MBA-1. The two Cbfal isfroms were transiently transfected into MBA-1 cells, then the changes of apoptosis rate were observed by flow cytometer. The protein expressions of Cbfa1, Bax, Bcl-2, caspase-3, and caspase-9, cytochrome-C and TNF-alpha were determined by Western immunoblot. After the transient transfection with the two isforms of Cbfa1, MBA-1, the cells apoptotic rates increased, and the ratio of Bax/Bcl-2, the expressions of cytochrome-C, caspase-3, caspase-9, and TNF-alpha were significantly increased. Cbfa1 can promote the apoptosis in mesenchymal cell line MBA-1. Bax/Bcl-2, cytochrome-C, caspase-9, caspase-3, and TNF-alpha are also involved in the apoptosis pathway.

  3. Use of Fabry-Perot annular summing spectroscopy to acquire geocoronal hydrogen Balmer-α line profile data

    NASA Astrophysics Data System (ADS)

    Nossal, Susan M.; Roesler, Fred L.; Coakley, Monica M.; Reynolds, Ronald J.

    1996-10-01

    A Fabry-Perot annular summing spectroscopy technique has been sued at the University of Wisconsin's Pine Bluff Observatory to acquire geocoronal Balmer-(alpha) line profile data with significantly improved precision and height resolution. The double-etalon Fabry-Perot interference pattern is imaged onto a photometrics PM512 CCD chip, thus enabling light to be gathered in multiple spectral bins simultaneously. In comparison with scanning systems we used earlier, the high quantum efficiency of the CCD and the multi-channel detection associated with the Fabry-Perot annular summing technique have enabled us to save a factor of about 10 in the integration time required for studies of the line profile. As a result, we are now able to both more precisely observe the line shape of the very faint Balmer- (alpha) emission and obtain data using shorter integration times. Our data illustrate the scientific potential for using this technique for the study of very faint extended emission line sources. The increase in the signal-to-noise of our data has enabled us to examine Balmer-(alpha) profile asymmetries which we have found to be compatible with predictions that on the order of 10 percent of the geocoronal Balmer-(alpha) excitation arises from cascades due to higher-member solar Lyman series excitation. This fine structure was overlooked in previous Balmer-(alpha) studies aimed at determining non-Maxwellian dynamical properties of exospheric hydrogen; we find that cascade excitation largely masks the expected very small dynamical perturbations to the line profile at low shadow heights, and must be more thoroughly studied before drawing conclusions about exospheric dynamics. Accounting for cascade laos leads to more realistic determinations of exospheric hydrogen temperatures near the exobase.

  4. Observed L-alpha profiles for two solar flares - 14:12 UT 15 June, 1973 and 23:16 UT 21 January, 1974

    NASA Astrophysics Data System (ADS)

    Canfield, R. C.; van Hoosier, M. E.

    1980-09-01

    Photographic observations of the time development of the profile of the L-alpha line of hydrogen during flares were obtained with the NRL spectrograph on ATM. The profiles for the June 15, 1973 and Jan. 21, 1974 flares cover both core and wings of the line. The time sequences begin before flare maximum, and continue well into the decay phase. Careful attention has been given to photometry and absolute calibration. In the case of the June 15 flare, data are presented both first-order corrected and uncorrected for incomplete filling of the spectrograph slit by flaring material. Correction of the January 21 flare was not possible. Core symmetry and shift are discussed, and it is shown that the observations imply integrated flare L-alpha/H-alpha intensity ratios within a factor of two of unity for these two flares.

  5. 20. GEOLOGY, PLAN AND PROFILE, SHOWING LINED AND UNLINED SECTIONS, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    20. GEOLOGY, PLAN AND PROFILE, SHOWING LINED AND UNLINED SECTIONS, AND DETAILED TYPICAL CROSS SECTIONS. Leeds, Hill, Barnard & Jewett drawing, no number, revised 3-20-42. - Salinas River Project, Cuesta Tunnel, Southeast of U.S. 101, San Luis Obispo, San Luis Obispo County, CA

  6. Non-LTE profiles of strong solar lines

    NASA Technical Reports Server (NTRS)

    Schneeberger, T. J.; Beebe, H. A.

    1976-01-01

    The complete linearization method is applied to the formation of strong lines in the solar atmosphere. Transitions in Na(I), Mg(I), Ca(I), Mg(II), and Ca(II) are computed with a standard atmosphere and microturbulent velocity model. The computed profiles are compared to observations at disk center.

  7. Regulation of apoptotic and growth inhibitory activities of C/EBP{alpha} in different cell lines

    SciTech Connect

    Wang Guoli; Shi Xiurong; Salisbury, Elizabeth; Timchenko, Nikolai A.

    2008-04-15

    C/EBP{alpha} is expressed in many tissues and inhibits cell growth. In this paper, we have examined mechanisms which regulate activities of C/EBP{alpha} in cell lines derived from different tissues. We found that C/EBP{alpha} possesses strong pro-apoptotic activity in NIH3T3 cells, while this activity is not detected in 3T3-L1, Hep3B2 and HEK293 cells. Micro-array data show that C/EBP{alpha} activates many genes of apoptosis signaling in NIH3T3 cells. One of these genes, ARL6IP5, is a direct target of C/EBP{alpha} and is a key mediator of the apoptosis. Using C/EBP{alpha} mutants which do not cause cell death; we have found that C/EBP{alpha} does not arrest proliferation of NIH3T3 cells. The lack of growth arrest in NIH3T3 cells correlates with the inhibition of p16INK4 and with low levels of cyclin D3. The limited growth inhibitory activity of C/EBP{alpha} is also observed in Hep3B2 cells which express low levels of cyclin D3. Elevation of cyclin D3 restores growth inhibitory activity of C/EBP{alpha} in NIH3T3 and in Hep3B2 cells. These data show that apoptotic and growth inhibitory activities of C/EBP{alpha} are differentially regulated in different cells and that cooperation of cyclin D3 and C/EBP{alpha} is required for the inhibition of proliferation.

  8. Absolute intensity calibrations of solar K line profiles

    NASA Technical Reports Server (NTRS)

    Pasachoff, J., M.

    1971-01-01

    Individual K-line profiles from elements of fine structure on the surface of the sun are calibrated absolutely. The continuum calibrations of Labs and Neckel and of Houtgast and Namba are considered, and the average K-profile is scaled to that of White and Suemoto. The ranges of intensities across a high-resolution spectrogram are tabulated for various parts of the line profile. Although the spatially-averaged value for K3 of 4.2% of the continuum corresponds to a brightness temperature of 4155 deg K, minimum and maximum values were 3980 and 4360 K, respectively. Similarly, K2v ranges from 4200 to 4560 K, and K2r from 4180 to 4460 K in small elements about 1 arc sec across.

  9. A first-line nurse manager's goal-profile.

    PubMed

    Johansson, Gunilla; Pörn, Ingmar; Theorell, Töres; Gustafsson, Barbro

    2007-01-01

    The aim of this case study was to acquire understanding concerning the first-line nurse manager's goal-profile, i.e. prioritization of goals in her work as a first-line nurse manager, through use of an action-theoretic and confirmatory theory. The first-line nurse manager's pivotal role regarding quality of care and development in relation to on-going changes in the health care sector is stressed by many researchers and the transition from nurse to manager is described as a demanding challenge for the first-line nurse manager. The case study described in this paper concerns a first-line nurse manager in an actual working environment in care of older people. Data collection comprised interviews, observations, a job description and policy documents. A hermeneutic interpretation was used for data analysis. The results showed that the first-line nurse manager had three goals in her goal-profile, in the following order of priority: (i) a nurse goal that she had strongly accepted and in which she had excellent control, (ii) an administrator goal that she had accepted and in which she had control, (iii) a leadership goal that she had not accepted and in which she did not have control. Both the administrator and leadership goals were based on her job description, but the nurse goal was a personally chosen goal based on her own self-relation/goal-fulfillment. The first-line nurse manager's prioritized self-identity, based on successful realization of goals in her goal-profile, was decisive in the manifestation of her work. This study contributes to a new understanding of the first-line nurse manager's self-identity related to work in terms of goal acceptance and goal control of prioritized goals. This action-theoretic approach could be a valuable 'key' for understanding leadership (or lack of leadership) in clinical practice.

  10. H{alpha} DOTS: A CATALOG OF FAINT EMISSION-LINE OBJECTS DISCOVERED IN NARROWBAND IMAGES

    SciTech Connect

    Kellar, Jessica A.; Wegner, Gary; Salzer, John J.; Williams, Anna; Gronwall, Caryl E-mail: gaw@northstar.dartmouth.edu E-mail: caryl@astro.psu.edu

    2012-06-15

    During a wide-field narrowband H{alpha} imaging survey, we noted the presence of numerous isolated emission-line point sources in the data. These objects could represent ultra-low-luminosity galaxies at low-redshift (detection via H{alpha}), isolated extragalactic H II regions associated with the galaxy targeted by the original observation, or background galaxies or QSOs where strong emission lines (most often [O III] {lambda}5007) redshift into our narrowband filter. We have carried out a systematic search for these 'H{alpha} dots' in over 200 15 Multiplication-Sign 15 arcmin fields. To date we have cataloged 61 candidate emission-line sources in roughly 11.7 deg{sup 2}. The sample has a median R magnitude of 19.5, and detects objects as faint as R = 22.6. Follow-up spectroscopy reveals that {approx}85% of the candidates are bona fide emission-line objects, with roughly 60% of the real sources being lower-redshift objects (detection via H{alpha}) and 40% being higher-redshift objects detected via [O III] emission or some other emission line. Here we present the results of our initial survey and follow-up spectroscopy. We use our sample to study the properties (including star-formation rates and metal abundances) of low-luminosity star-forming galaxies in the nearby universe and of low-metallicity star-forming galaxies at z Almost-Equal-To 0.33.

  11. Low redshift Lyman alpha absorption lines and the dark matter halos of disk galaxies

    NASA Technical Reports Server (NTRS)

    Maloney, Philip

    1993-01-01

    Recent observations using the Hubble Space Telescope of the z = 0.156 QSO 3C 273 have discovered a surprisingly large number of Ly-alpha absorption lines. In particular, Morris et al. found 9 certain and 7 possible Ly-alpha lines with equivalent widths above 25 mA. This is much larger (by a factor of 5-10) than the number expected from extrapolation of the high-redshift behavior of the Ly-alpha forest. Within the context of pressure-confined models for the Ly-alpha clouds, this behavior can be understood if the ionizing background declines sharply between z is approximately 2 and z is approximately 0. However, this requires that the ionizing photon flux drop as rapidly as the QSO volume emissivity; moreover, the absorbers must have a space density n(sub O) is approximately 2.6(N/10)h/((D/100 kpc)(sup 2)) Mpc(sup -3) where D is the present-day diameter of the absorbers. It is somewhat surprising that such necessarily fragile objects could have survived in such numbers to the present day. It is shown that it is plausible that the atomic hydrogen extents of spiral and irregular galaxies are large enough to produce the observed number of Ly-alpha absorption lines toward 3C 273, and that the neutral column densities and doppler b-values expected under these conditions fall in the range found by Morris et al. (1991).

  12. Low redshift Lyman alpha absorption lines and the dark matter halos of disk galaxies

    NASA Astrophysics Data System (ADS)

    Maloney, Philip

    1993-01-01

    Recent observations using the Hubble Space Telescope of the z = 0.156 QSO 3C 273 have discovered a surprisingly large number of Ly-alpha absorption lines. In particular, Morris et al. found 9 certain and 7 possible Ly-alpha lines with equivalent widths above 25 mA. This is much larger (by a factor of 5-10) than the number expected from extrapolation of the high-redshift behavior of the Ly-alpha forest. Within the context of pressure-confined models for the Ly-alpha clouds, this behavior can be understood if the ionizing background declines sharply between z is approximately 2 and z is approximately 0. However, this requires that the ionizing photon flux drop as rapidly as the QSO volume emissivity; moreover, the absorbers must have a space density n(sub O) is approximately 2.6(N/10)h/((D/100 kpc)(sup 2)) Mpc(sup -3) where D is the present-day diameter of the absorbers. It is somewhat surprising that such necessarily fragile objects could have survived in such numbers to the present day. It is shown that it is plausible that the atomic hydrogen extents of spiral and irregular galaxies are large enough to produce the observed number of Ly-alpha absorption lines toward 3C 273, and that the neutral column densities and doppler b-values expected under these conditions fall in the range found by Morris et al. (1991).

  13. Resolved line profiles of PNe in NGC6822.

    NASA Astrophysics Data System (ADS)

    Flores-Duran, S.; Peña, M.; Hernández-Martínez, L.; García-Rojas, J.; Ruiz, M. T.

    2014-04-01

    "Using high resolution spectroscopic data obtained with Magellan Inamori Kyocera Echelle (MIKE) at the Magellan telescope at Las Campanas Observatory it was possible to resolve the emission line profiles of [OIII] 5007, Ha and [NII] 6583 in two planetary nebulae belonging to the Local Group galaxy NGC 6822 (Flores-Durán et al. submitted). The two PNe, called PN4 and PN7 were identified after Leisy et al. (2005, A&A, x436, 437). In the case of PN4, it presents wide lines that show a structure with three components. The [NII] 6583 line profile clearly shows a central component surrounded by what appears to be a shell with an expantion velocity of 25 km s-1. For PN7, the [OIII] emission lines present two very close components differing in velocity by about 15 km s-1 and, in the [N II] 6583 profile a faint very-wide component is apparent. This latter component represents a sort of bipolar outflow at high velocities (about 140 km s-1) as the case of the galactic M1-32, M3-15 and others (Medina et al. 2006, RMAA, 42, 53; Akras & López 2012, MNRAS, 425, 2197; Rechy-García et al., this meeting)."

  14. Extension of H-alpha/H-beta Photometry to Additional Luminosity Classes and Emission Line Objects

    NASA Astrophysics Data System (ADS)

    Hintz, Eric G.; Joner, Michael D.

    2017-01-01

    In Joner & Hintz (2015) they presented a fully calibrated H-alpha index based on spectroscopic observations of main sequence stars ranging from O9 to K2. In that work they provided relations between the H-alpha index, temperature, and equivalent width. In Didelon (1982) the relation between spectral type and equivalent width is examined with a clear difference between luminosity classes. In this poster we will present results from a spectroscopic examination of the H-alpha/H-beta relations. First we will examine the equivalent width as a function of luminosity class. Then we will examine the extension of the H-alpha system for application to emission line objects.We would like to acknowledge use of the Dominion Astrophysical Observatory 1.2-m Telescope.

  15. Isolation and characterization of a new mutant human cell line unresponsive to alpha and beta interferons.

    PubMed

    John, J; McKendry, R; Pellegrini, S; Flavell, D; Kerr, I M; Stark, G R

    1991-08-01

    Previously we described human cell line 2fTGH, in which expression of guanine phosphoribosyltransferase is tightly controlled by the upstream region of interferon (IFN)-stimulated human gene 6-16. After mutagenesis of 2fTGH and selection with 6-thioguanine and IFN-alpha, we isolated 11.1, a recessive mutant that does not respond to IFN-alpha. We now describe U2, a second recessive mutant, selected similarly, that complements 11.1. U2 had no response to IFN-alpha or IFN-beta, and its response to IFN-gamma was partially defective. Although many genes did respond to IFN-gamma in U2, the 9-27 gene did not and the antiviral response of U2 cells to IFN-gamma was greatly reduced. Band shift assays showed that none of the transcription factors normally induced in 2fTGH cells by IFN-alpha (E and M) or IFN-gamma (G) were induced in U2. However, extracts of untreated U2 cells gave rise to a novel band that was increased by treatment with IFN-gamma but not IFN-alpha. Band shift complementation assays revealed that untreated and IFN-gamma-treated U2 cells lack the functional E gamma subunit of transcription factor E and that IFN-alpha-treated U2 cells do contain the functional E alpha subunit.

  16. Human Alpha and Beta Papillomaviruses Use Different Synonymous Codon Profiles

    PubMed Central

    Cladel, Nancy M.; Bertotto, Alex; Christensen, Neil D.

    2013-01-01

    Human papillomaviruses use rare codons relative to their hosts. It has been theorized that this is a mechanism to allow the virus to escape immune surveillance. In the present study we examined the codings of four major genes of 21 human alpha (mucosatropic) viruses and 16 human beta (cutaneous-tropic) viruses. We compared the codon usage of different genes from a given papillomavirus and also the same genes from different papillomaviruses. Our data showed that codon usage was not always uniform between two genes of a given papillomavirus or between the same genes of papillomaviruses from different genera. We speculate as to why this might be and conclude that codon usage in the papillomaviruses may not only play a role in facilitating escape from immune surveillance but may also underlie some of the unanswered questions in the papillomavirus field. PMID:20157772

  17. Human alpha and beta papillomaviruses use different synonymous codon profiles.

    PubMed

    Cladel, Nancy M; Bertotto, Alex; Christensen, Neil D

    2010-06-01

    Human papillomaviruses use rare codons relative to their hosts. It has been theorized that this is a mechanism to allow the virus to escape immune surveillance. In the present study, we examined the codings of four major genes of 21 human alpha (mucosatropic) viruses and 16 human beta (cutaneous-tropic) viruses. We compared the codon usage of different genes from a given papillomavirus and also the same genes from different papillomaviruses. Our data showed that codon usage was not always uniform between two genes of a given papillomavirus or between the same genes of papillomaviruses from different genera. We speculate as to why this might be and conclude that codon usage in the papillomaviruses may not only play a role in facilitating escape from immune surveillance but may also underlie some of the unanswered questions in the papillomavirus field.

  18. Evasion mechanisms to tumor necrosis factor alpha (TNF-alpha) of small cell lung carcinoma and non-small cell lung carcinoma cell lines: comparison with the erythroleukaemia K-562 cell line.

    PubMed

    López-González, J S; Hernández García, A; Noyola, M I; Cázares, D A; Mandoki, J J; Morales, F M; Mendieta, I C; Caloca, J V

    2000-03-01

    The tumour necrosis factor alpha (TNF-alpha) is produced by mononuclear phagocytes as a defence mechanism against malignant cells. However, these cells can evade destruction by TNF-alpha. The present study evaluates in three lung cancer cell lines (small cell carcinoma NCI-H69, adenocarcinoma A-427, squamous carcinoma SK-MES-1) and one erythroleukaemia (K-562) cell line the following evasion mechanisms: (1) inhibition of TNF-alpha production, in indirect and direct co-cultures with monocytes; (2) the expression of type I and type II receptors for TNF-alpha (TNFRI and TNFRII) by tumour cell lines, using indirect immunofluorescence and flow cytometry; (3) the sensitivity of tumour cell lines to the toxic action of recombinant human TNF-alpha (rhTNF-alpha). With the exception of cell line NCI-H69, the other tumour cell lines liberated soluble factors that inhibited TNF-alpha production in monocytes. This effect occurred even after membrane contact with the A-427 and SK-MES-1 cell lines. Erythroleukaemia K-562 cells expressed both types of receptors for TNF-alpha, whereas the NCI-H69 cells expressed only TNFRI, and the A-427 and SK-MES-1 cells expressed no receptors. Lines NCI-H69, A-427 and K-562 were insensitive to the cytotoxic action of rhTNF-alpha. In conclusion, different lung cancer cell lines may evade destruction by TNF-alpha by various mechanisms that range from blocking TNF-alpha production by monocytes to blocking the cytotoxic action of this molecule. For selecting the most effective immunotherapy, knowledge of the evasion mechanisms would be useful.

  19. The circumstellar environment of the emission-line star LkH-alpha 101

    NASA Technical Reports Server (NTRS)

    Barsony, M.; Scoville, N. Z.; Schombert, J. M.; Claussen, M. J.

    1990-01-01

    The environs of the premain-sequence, emission-line star, LkH-alpha 101, have been observed by broad-band CCD imaging, high-resolution optical spectroscopy, IRAS imaging, and single-dish, as well as interferometric, millimeter-line mapping. LkH-alpha 101 exhibits a high mass-loss rate (0.000011) low-velocity (350 km/s) ionized wind typical of early-type premain-sequence stars (Barsony, 1989). The millimeter interferometer maps show that this wind has cleared out a cavity in the molecular cloud surrounding LkH-alpha 101, allowing the rapid expansion of the previously observed VLA H II region (Becker and White, 1988).

  20. Dynamic evolution of recurrent mass ejections observed in H-alpha and C IV lines

    NASA Technical Reports Server (NTRS)

    Schmieder, B.; Mein, P.; Martres, M. J.; Tandberg-Hanssen, E.

    1984-01-01

    The mass ejections of 1 September, 1980 are studied from observations obtained with the MSDP spectrograph and with the Ultraviolet Spectrometer and Polarimeter aboard the Solar Maximum Mission satellite. The analysis is focused on observations in the chromospheric H-alpha line and the transition region C IV 1548 A line. It is noted that cold and hot material had the same projection, although the upward C IV velocity structure was more extended than the H-alpha one. It is shown that the observed contrast of the H-alpha absorbing structure can be interpreted in terms of a dynamic cloud model overlying the chromosphere. Radial velocities of 25-30 km/s and -40 km/s are estimated for the first and second phases of ejection, respectively.

  1. Sodium D-line emission from Io - Comparison of observed and theoretical line profiles

    NASA Technical Reports Server (NTRS)

    Carlson, R. W.; Matson, D. L.; Johnson, T. V.; Bergstralh, J. T.

    1978-01-01

    High-resolution spectra of the D-line profiles have been obtained for Io's sodium emission cloud. These lines, which are produced through resonance scattering of sunlight, are broad and asymmetric and can be used to infer source and dynamical properties of the sodium cloud. In this paper we compare line profile data with theoretical line shapes computed for several assumed initial velocity distributions corresponding to various source mechanisms. We also examine the consequences of source distributions which are nonuniform over the surface of Io. It is found that the experimental data are compatible with escape of sodium atoms from the leading hemisphere of Io and with velocity distributions characteristic of sputtering processes. Thermal escape and simple models of plasma sweeping are found to be incompatible with the observations.

  2. FIR line profiles as probes of warm gas dynamics

    NASA Technical Reports Server (NTRS)

    Betz, A. L.; Boreiko, R. T.

    1995-01-01

    Measurements of the shapes, velocities, and intensities of FIR lines all help to probe the dynamics, physical associations, and excitation conditions of warm gas in molecular clouds. With this in mind, we have observed the J=9-8, 12-11,14-13, and 16-15 lines of (12)CO and the 158 micron line of C II in a number of positions in 4 selected clouds. The data were obtained with a laser heterodyne spectrometer aboard NASA's Kuiper Airborne Observatory. Line measurements at 0.6 km/s resolution allow us to resolve the profiles completely, and thereby to distinguish between UV-and shock-heating mechanisms for the high-excitation gas. For CO, the high-J linewidths lie in the range of 4-20 km/s (FWHM), similar to those observed for low-J (J less than 4) transitions in these sources. This correspondence suggests that the hotter gas (T = 200-600 K) is dynamically linked to the quiescent gas component, perhaps by association with the UV-heated peripheries of the numerous cloud clumps. Much of the C II emission is thought to emanate from these cloud peripheries, but the line profiles generally do not match those seen in CO. None of the observed sources show any evidence in high-J (12)CO emission for shock-excitation (i.e., linewidths greater than 30 km/s).

  3. Black Hole Masses from [OIII] Line Profiles in PG Quasars

    NASA Astrophysics Data System (ADS)

    Nelson, Charles; Gelderman, Richard

    2002-08-01

    We propose to obtain high S/N, high resolution spectroscopy centered on the [OIII] (lambda) 5007 emission line for all of the PG quasars. Previous results have shown that the kinematics of the narrow line region gas (NLR) are predominantly due to gravitational motion in the bulge potential of the host galaxy. Thus, using the now well established correlation between bulge velocity dispersion, sigs, and nuclear black hole mass, Mbh, we can use the FWHM of the emission line profiles to estimate Mbh for the entire sample. This technique is independent of reverberation mapping techniques which rely on the assumption of Keplerian motion in the broad line region (BLR). We plan to use these Mbh values to estimate the Eddington ratio, and to test the idea that L/L_E is the primary influence on the group of AGN correlations known as eigenvector 1. We will also use the NLR kinematics to investigate the possibility of lower M/L in the AGN host galaxy bulge compared to normal galaxies. In those cases where the emission line profile shows evidence for substructure we will examine the effects of gas-jet interactions in the NLR. After two successful runs on this program (one awarded by the TAC and the other complements of the Director) we have completed all PG quasars visible in the spring (55) and are requesting time to observe the remaining (35) targets.

  4. Synthetic line profiles of rotationally distorted hot-star winds

    NASA Astrophysics Data System (ADS)

    Harries, Tim J.

    2000-07-01

    A new Monte Carlo stellar wind radiative-transfer code is presented. The code employs a three-dimensional opacity grid, and fully treats polarization and multiple scattering. Either Mie or Rayleigh scattering phase matrices may be used, and the line-transfer is treated by means of the Solobolev approximation. Variance reduction techniques are employed to increase computational efficiency. The results of several tests of the code are reported. It is confirmed that no continuum polarization is produced in the spherically symmetric wind case, and that the line profiles computed match those computed using established radiative-transfer codes. The continuum polarization produced by a latitudinally structured low-density wind is found to be in good agreement with that predicted by the single-scattering analytical treatment of Fox, while in the higher density regime the polarizations are consistent with the multiple-scattering code given by Hillier. Two illustrative applications of the code are described, using the wind parameters of ζ Puppis [O4I(n)f] as the base model. In the first the effect on the line profile of a corotating spiral density enhancement is examined. It is found that the spiral gives line profile variations on the order of 5 per cent, and that it produces an S-wave-like pattern as a function of rotational phase. It is noted that the accelerations described by the spiral wave may mimic those produced by tangentially accelerating wind clumps. The variable polarization produced by the spiral is found to have an amplitude of 0.1 per cent, with two maxima per rotational period in phase with the line emission modulation. The second application investigates the profiles and polarization produced in a clumped wind. Although the parameters of the discrete wind clumps are necessarily arbitrary, it is found that a clumped-wind model reproduces the level of spectroscopic variability found by Eversberg et al. It is shown that the wind emission `bumps' produced in

  5. Observation and Analysis of High Resolution Optical Line Profiles in Comet Hyakutake (C/1996 B2)

    NASA Astrophysics Data System (ADS)

    Combi, M. R.; Cochran, A. L.

    1997-07-01

    Very high resolution (R=200,000) and high signal-to-noise echelle spectra were obtained of comet C/Hyakutake 1996 B2 using the 2DCoude spectrograph on the 2.7 m telescope at McDonald Observatory during late March and early April 1996. Doppler resolved profiles are presented for individual lines of most of the major optical neutral species: CN, C_2, O((1) D) at 6300{ Angstroms}, O((1) S) at 5577{ Angstroms} , NH_2, and H Balmer-alpha at 6563{ Angstroms}. These may be the first ever to be published for CN, C_2, and O((1) S). In all cases the instrument spectral function is smaller than the intrinsic line widths of the individual cometary lines, so the observations provide clear signatures of lines which are Doppler broadened by different combinations of the coma expansion, exothermic photochemical ejection speeds, and collisional thermalization. For modeling analysis of these data we have used a hybrid fluid/kinetic Monte Carlo approach which can realistically include all of the relevant physical/chemical processes important for shaping the spectral lines. Because of the very short lifetime of the NH_2 parent (NH_3), the NH_2 is collisionally thermalized and provides an excellent probe of the outflow of the expanding coma. Because O((1) D) atoms in the region sampled are produced mainly by the photodissociation of water and the resulting photon is a prompt emission, the line retains signatures of both the basic coma expansion velocity and the 1.6 km s(-1) ejection speed of the O({(1}) D) atoms. The O((1) S) profile is consistent with that for the O((1) D). The profiles of CN and C_2 are somewhat broadened (CN more so than C_2), compared with NH_2, and seem to require a combination of coma expansion and the exothermic ejection speed they receive upon their production. Although the H Balmer-alpha line is complicated by a chance coincidence of an H_2O(+) line and optical depth effects in the solar Lyman-beta which pumps the Balmer-alpha emission, the spread of the wings

  6. Interpreting the Mg IIh andk Line Profiles of Mira Variables

    NASA Astrophysics Data System (ADS)

    Wood, B. E.; Karovska, M.

    2000-11-01

    We use radiative transfer calculations to reproduce the basic appearance of Mg II lines observed from Mira variables. These lines have centroids that are blueshifted by at least 30 km s-1 from the stellar rest frame. It is unlikely that flow velocities in the stellar atmospheres are this fast, so radiative transfer effects must be responsible for this behavior. Published hydrodynamic models predict the existence of cool, downflowing material above the shocked material responsible for the Mg II emission, and we demonstrate that scattering in this layer can result in Mg II profiles as highly blueshifted as those that are observed. However, our models also show that scattering within the shock plays an equally strong role in shaping the Mg II profiles, and our calculations illustrate the importance of partial redistribution and the effects of being out of ionization equilibrium.

  7. Fundamental Parameters Line Profile Fitting in Laboratory Diffractometers

    PubMed Central

    Cheary, R. W.; Coelho, A. A.; Cline, J. P.

    2004-01-01

    The fundamental parameters approach to line profile fitting uses physically based models to generate the line profile shapes. Fundamental parameters profile fitting (FPPF) has been used to synthesize and fit data from both parallel beam and divergent beam diffractometers. The refined parameters are determined by the diffractometer configuration. In a divergent beam diffractometer these include the angular aperture of the divergence slit, the width and axial length of the receiving slit, the angular apertures of the axial Soller slits, the length and projected width of the x-ray source, the absorption coefficient and axial length of the sample. In a parallel beam system the principal parameters are the angular aperture of the equatorial analyser/Soller slits and the angular apertures of the axial Soller slits. The presence of a monochromator in the beam path is normally accommodated by modifying the wavelength spectrum and/or by changing one or more of the axial divergence parameters. Flat analyzer crystals have been incorporated into FPPF as a Lorentzian shaped angular acceptance function. One of the intrinsic benefits of the fundamental parameters approach is its adaptability any laboratory diffractometer. Good fits can normally be obtained over the whole 20 range without refinement using the known properties of the diffractometer, such as the slit sizes and diffractometer radius, and emission profile. PMID:27366594

  8. Hydrogen transport diagnostics by atomic and molecular emission line profiles simultaneously measured for large helical device

    SciTech Connect

    Fujii, K.; Shikama, T.; Hasuo, M.; Goto, M.; Morita, S.

    2013-01-15

    We observe the Balmer-{alpha}, -{beta}, and -{gamma} lines of hydrogen atoms and Q branches of the Fulcher-{alpha} band of hydrogen molecules simultaneously with their polarization resolved for large helical device. From the fit including the line splits and the polarization dependences by the Zeeman effect, the emission locations, intensities, and the temperatures of the atoms and molecules are determined. The emission locations of the hydrogen atoms are determined outside but close to the last closed flux surface (LCFS). The results are consistent with a previous work (Phys. Plasmas 12, 042501 (2005)). On the other hand, the emission locations of the molecules are determined to be in the divertor legs, which is farer from those of the atoms. The kinetic energy of the atoms is 1 {approx} 20 eV, while the rotational temperature of molecules is {approx}0.04 eV. Additionally, substantial wings, which originate from high velocity atoms and are not reproduced by the conventional spectral analysis, are observed in the Balmer line profiles. We develop a one-dimensional model to simulate the transport of the atoms and molecules. The model reproduces the differences of the emission locations of the atoms and molecules when their initial temperatures are assumed to be 3 eV and 0.04 eV, respectively. From the model, the wings of the Balmer-{alpha} line is attributed to the high velocity atoms exist deep inside the LCFS, which are generated by the charge exchange collisions with hot protons there.

  9. Predicting the Redshift 2 H-Alpha Luminosity Function Using [OIII] Emission Line Galaxies

    NASA Technical Reports Server (NTRS)

    Mehta, Vihang; Scarlata, Claudia; Colbert, James W.; Dai, Y. S.; Dressler, Alan; Henry, Alaina; Malkan, Matt; Rafelski, Marc; Siana, Brian; Teplitz, Harry I.; hide

    2015-01-01

    Upcoming space-based surveys such as Euclid and WFIRST-AFTA plan to measure Baryonic Acoustic Oscillations (BAOs) in order to study dark energy. These surveys will use IR slitless grism spectroscopy to measure redshifts of a large number of galaxies over a significant redshift range. In this paper, we use the WFC3 Infrared Spectroscopic Parallel Survey (WISP) to estimate the expected number of H-alpha emitters observable by these future surveys. WISP is an ongoing Hubble Space Telescope slitless spectroscopic survey, covering the 0.8 - 1.65 micrometers wavelength range and allowing the detection of H-alpha emitters up to z approximately equal to 1.5 and [OIII] emitters to z approximately equal to 2.3. We derive the H-alpha-[OIII] bivariate line luminosity function for WISP galaxies at z approximately equal to 1 using a maximum likelihood estimator that properly accounts for uncertainties in line luminosity measurement, and demonstrate how it can be used to derive the H-alpha luminosity function from exclusively fitting [OIII] data. Using the z approximately equal to 2 [OIII] line luminosity function, and assuming that the relation between H-alpha and [OIII] luminosity does not change significantly over the redshift range, we predict the H-alpha number counts at z approximately equal to 2 - the upper end of the redshift range of interest for the future surveys. For the redshift range 0.7 less than z less than 2, we expect approximately 3000 galaxies per sq deg for a flux limit of 3 x 10(exp -16) ergs per sec per sq cm (the proposed depth of Euclid galaxy redshift survey) and approximately 20,000 galaxies per sq deg for a flux limit of approximately 10(exp -16) ergs per sec per sq cm (the baseline depth of WFIRST galaxy redshift survey).

  10. Cytokine profile of breast cell lines after different radiation doses.

    PubMed

    Bravatà, Valentina; Minafra, Luigi; Forte, Giusi Irma; Cammarata, Francesco Paolo; Russo, Giorgio; Di Maggio, Federica Maria; Augello, Giuseppa; Lio, Domenico; Gilardi, Maria Carla

    2017-09-01

    Ionizing radiation (IR) treatment activates inflammatory processes causing the release of a great amount of molecules able to affect the cell survival. The aim of this study was to analyze the cytokine signature of conditioned medium produced by non-tumorigenic mammary epithelial cell line MCF10A, as well as MCF7 and MDA-MB-231 breast cancer cell lines, after single high doses of IR in order to understand their role in high radiation response. We performed a cytokine profile of irradiated conditioned media of MCF10A, MCF7 and MDA-MB-231 cell lines treated with 9 or 23 Gy, by Luminex and ELISA analyses. Overall, our results show that both 9 Gy and 23 Gy of IR induce the release within the first 72 h of cytokines and growth factors potentially able to influence the tumor outcome, with a dose-independent and cell-line dependent signature. Moreover, our results show that the cell-senescence phenomenon does not correlate with the amount of 'senescence-associated secretory phenotype' (SASP) molecules released in media. Thus, additional mechanisms are probably involved in this process. These data open the possibility to evaluate cytokine profile as useful marker in modulating the personalized radiotherapy in breast cancer care.

  11. O2 density and temperature profiles retrieving from direct solar Lyman-alpha radiation measurements

    NASA Astrophysics Data System (ADS)

    Guineva, V.; Witt, G.; Gumbel, J.; Khaplanov, M.; Werner, R.; Hedin, J.; Neichev, S.; Kirov, B.; Bankov, L.; Gramatikov, P.; Tashev, V.; Popov, M.; Hauglund, K.; Hansen, G.; Ilstad, J.; Wold, H.

    2009-12-01

    The resonance transition 2P-2S of the atomic hydrogen (Lyman-alpha emission) is the strongest and most conspicuous feature in the solar EUV spectrum. The Lyman-alpha radiation transfer depends on the resonance scattering from the hydrogen atoms in the atmosphere and on the O2 absorption. Since the Lyman-alpha extinction in the atmosphere is a measure for the column density of the oxygen molecules, the atmospheric O2 density and temperature profiles can be calculated thereof. A detector of solar Lyman-alpha radiation was manufactured in the Stara Zagora Department of the Solar-Terrestrial Influences Laboratory (STIL). Its basic part is an ionization camera, filled in with NO. A 60 V power supply is applied to the chamber. The produced photoelectric current from the sensor is fed to a two-channel amplifier, providing analog signal. The characteristics of the Lyman-alpha detector were studied. It passed successfully all tests and the results showed that the so-designed instrument could be used in rocket experiments to measure the Lymanalpha flux. From the measurements of the detector, the Lyman-alpha vertical profile can be obtained. Programs are created to compute the O2 density, atmospheric power and temperature profiles based on Lymanalpha data. The detector design appertained to ASLAF project (Attenuation of the Solar Lyman-Alpha Flux), a scientific cooperation between STIL—Bul.Acad.Sci., Stara Zagora Department and the Atmospheric Physics Group at the Department of Meteorology (MISU), Stockholm University, Sweden. The joint project was part of the rocket experiment HotPay I, in the ALOMAR eARI Project, EU’s 6th Framework Programme, Andøya Rocket Range, Andenes, Norway. The project is partly financed by the Bulgarian Ministry of Science and Education.

  12. Mg II line profiles of the Mira S Carinae

    NASA Technical Reports Server (NTRS)

    Brugel, Edward W.; Bookbinder, Jay A.; Brown, Alexander

    1988-01-01

    High-dispersion IUE observations obtained to investigate the evolution of the shock structure of the Mira S Carinae (S Car) produced, despite very limited phase coverage, a set of five spectra of the Mg II h and k lines. There is significant emission from both the h and k lines at velocities of -150 km/sec relative to the stellar photosphere. The h-to-k ratio of the Mg II doublet remains below the theoretically predicated values of 2:1 to 1:1, and shows a smooth dependence on the optical phase. Archival studies of other Miras (e.g., R Car) indicate that S Car is not unique in possessing unusual and highly variable Mg II h and k line profiles.

  13. Effects of prescattering attenuation of spectropolarimetric line profiles

    NASA Technical Reports Server (NTRS)

    Wood, Kenneth; Bjorkman, J. E.

    1995-01-01

    We present the wavelength dependent linear polarization and position angle variations arising from single Thomson scattering of continuum stellar radiation in an axisymmetric, hot, planar disk, which is in bulk motion. The wavelength dependence arises through the combination of Doppler shifted line attenuation, prior to scattering, and the Doppler redistribution of the scattered radiation due to the bulk and thermal motions of the disk electrons. We find that when the scattering electrons are cold, there are large polarization and position angle variations across the resulting spectrapolarimetric absorption line profile-agreeing with previous investigations. However, when the thermal Doppler velocities of the scattering electrons are comparable to or greater than the electron bulk velocity (as is of ten the case), then the scattered line profile is broadened and the amplitude of the polarimetric variations are considerably reduced. The properties of the electron thermal smearing function are such that the equivalent width of any scattered spectrapolarimetric feature is independent on the electron temperature-a consequence of the conservation of areas under convolution. An important result of this is that for an axisymmetric circumstellar envelope the position angle variations will average to zero across any line formed through the above process. We expect that the effect of multiple line blending will yield a depolarization equivalent width is given by thesum of the individual equivalent widths and the position angle variations will average to zero. The implications of this are that the large depolarizations observed in the UV spectra of pi Aquarii, zeta Tauri and PP Carinae by the Wisconsin Ultraviolet Photo Polarimeter Experiment (WUPPE) can only be explained with prescattering attenuation of stellar flux if there are a sufficient number of multiple overlapping lines in that part of the spectrum.

  14. The transmission correlation in the QSO Ly(alpha) forest produced by finite width lines

    NASA Astrophysics Data System (ADS)

    Zuo, Lin; Bond, J. Richard

    1994-03-01

    The transmission of a quasar spectrum (flux divided by the continuum) is correlated because of the finite width of absorption lines. We describe a technique for calculating the transmission correlation function produced by randomly distributed lines. We also introduce straightforward procedure for measuring the pixel-pixel transmission correlation function xipp directly from observed quasar spectra. We apply the method to 12 Sargent, Boksenberg, & Steidel Quasi-Stellar Objects (QSO) spectra and compare these with theoretical transmission correlation functions and with xipp measured from computer-simulated quasar spectra of Ly(alpha) forest models with Poisson-distributed lines. The simulations are designed to mimic the observed spectrum as closely as possible, with the same wavelength sampling, instrumental resolution, continuum and noise properties. The comparisons with line distributions that are power laws in column density and redshift, and Gaussians in line width b reveal an excess in the observed xipp at Delta(v) is approximately or equal to 150 km/s, if we adopt the Carswell et al. (1991) parameters for the Gaussian (mean b0 = 30 km/s, dispersion sigmab = 10 km/s). One possibility is that the Ly(alpha) forest lines are actually clustered at velocity separation scales Delta(v) is approximately or equal to 150 km/s. Another possibility we explore is that the b-distribution has more large b clouds and a larger dispersion. We find the observed xipp is barely consistent with b0 = 40 km/s and sigmab = 25 km/s. We show that the measured xipp is relatively insensitive to the noise level and to errors in the continuum determination, unlike the traditional line counting methods, where the outcome is quite vulnerable to both. It also requires no line deblending and thus offers a powerful tool for extracting information from the crowded Ly(alpha) forest.

  15. Patterns of alpha-L-fucosidase in acute myeloid leukemia cells. Comparison with promyelocytic HL-60 cell line.

    PubMed

    Dosbaa, I; Bernard, M; Foglietti, M J; Percheron, F; Emiliani, C

    1992-12-15

    Changes were observed in alpha-L-fucosidase forms in cells from acute myelocytic leukemias (AML). Total alpha-L-fucosidase activity was not significantly different for normal granulocytes and leukemic cells, but enzymic profiles obtained by chromatofocusing are quite different. In granulocyte profile, two main peaks are present (B and more acidic A) which were eluted at pH 5.2 with a shoulder at pH 4.6. In AMLs the B form is present but weakly expressed, whereas the more acidic forms are the major ones. This pattern may be related either to the malignancy character or to the stage at which the differentiation is stopped. Experiments on an HL-60 cell line (promyelocytic cells corresponding to the AML 3 type) showed that differentiation induced by dimethyl sulfoxide leads to the appearance of the B form present in normal mature cells. Thus the repartition of the enzyme forms seems to be related to the stage of differentiation of the myelocytic cells.

  16. Pressure effects on water vapour lines: beyond the Voigt profile.

    PubMed

    Ngo, N H; Tran, H; Gamache, R R; Hartmann, J M

    2012-06-13

    A short overview of recent results on the effects of pressure (collisions) regarding the shape of isolated infrared lines of water vapour is presented. The first part of this study considers the basic collisional quantities, which are the pressure-broadening and -shifting coefficients, central parameters of the Lorentzian (and Voigt) profile and thus of any sophisticated line-shape model. Through comparisons of measured values with semi-classical calculations, the influences of the molecular states (both rotational and vibrational) involved and of the temperature are analysed. This shows the relatively unusual behaviour of H(2)O broadening, with evidence of a significant vibrational dependence and the fact that the broadening coefficient (in cm(-1) atm(-1)) of some lines increases with temperature. In the second part of this study, line shapes beyond the Voigt model are considered, thus now taking 'velocity effects' into account. These include both the influence of collisionally induced velocity changes that lead to the so-called Dicke narrowing and the influence of the dependence of collisional parameters on the speed of the radiating molecule. Experimental evidence of deviations from the Voigt shape is presented and analysed. The interest of classical molecular dynamics simulations, to model velocity changes, together with semi-classical calculations of the speed-dependent collisional parameters for line-shape predictions from 'first principles', are discussed.

  17. High-resolution measurements, line identification, and spectral modeling of K-alpha transitions in Fe XVIII-Fe XXV

    NASA Technical Reports Server (NTRS)

    Beiersdorfer, P.; Phillips, T.; Jacobs, V. L.; Hill, K. W.; Bitter, M.; Von Goeler, S.; Kahn, S. M.

    1993-01-01

    A detailed analysis of the iron K-alpha emission spectrum covering the wavelength region from 1.840 to 1.940 A is presented. Measurements are made with a high-resolution Bragg crystal spectrometer on the Princeton Large Torus (PLT) tokamak for plasma conditions which closely resemble those of solar flares. A total of 40 features are identified, consisting of either single or multiple lines from eight charge states in iron, Fe XVIII - Fe XXV, and their wavelengths are determined with an accuracy of 0.1-0.4 mA. Many of these features are identified for the first time. In the interpretation of our observations we rely on model calculations that determine the ionic species abundances from electron density and temperature profiles measured independently with nonspectroscopic techniques and that incorporate theoretical collisional excitation and dielectronic recombination rates resulting in the excitation of the 1s2sr2ps configurations. The model calculations also include the effect of diffusive ion transport. Good overall agreement between the model calculations and the observations is obtained, which gives us confidence in our line identifications and spectral modeling capabilities. The results are compared with earlier analyses of the K-alpha emission from the Sun.

  18. High-resolution measurements, line identification, and spectral modeling of K-alpha transitions in Fe XVIII-Fe XXV

    NASA Technical Reports Server (NTRS)

    Beiersdorfer, P.; Phillips, T.; Jacobs, V. L.; Hill, K. W.; Bitter, M.; Von Goeler, S.; Kahn, S. M.

    1993-01-01

    A detailed analysis of the iron K-alpha emission spectrum covering the wavelength region from 1.840 to 1.940 A is presented. Measurements are made with a high-resolution Bragg crystal spectrometer on the Princeton Large Torus (PLT) tokamak for plasma conditions which closely resemble those of solar flares. A total of 40 features are identified, consisting of either single or multiple lines from eight charge states in iron, Fe XVIII - Fe XXV, and their wavelengths are determined with an accuracy of 0.1-0.4 mA. Many of these features are identified for the first time. In the interpretation of our observations we rely on model calculations that determine the ionic species abundances from electron density and temperature profiles measured independently with nonspectroscopic techniques and that incorporate theoretical collisional excitation and dielectronic recombination rates resulting in the excitation of the 1s2sr2ps configurations. The model calculations also include the effect of diffusive ion transport. Good overall agreement between the model calculations and the observations is obtained, which gives us confidence in our line identifications and spectral modeling capabilities. The results are compared with earlier analyses of the K-alpha emission from the Sun.

  19. Measurement of the Relative Intensity of the Ly-(alpha) Lines in Fe 25+

    SciTech Connect

    Wong, K L; Beiersdorfer, P; Reed, K J; Osterheld, A L

    2002-06-18

    The intensity of the polarized Ly-{alpha}{sub 1} (2p{sub 3/2} {yields} 1s{sub 1/2}) transition has been measured relative to that of the unpolarized Ly-{alpha}{sub 2} (2p{sub 1/2} {yields} 1s{sub 1/2}) transition in Fe{sup 25+}. The measurements were made with the Livermore electron beam ion trap EBIT-II for beam energies from threshold to 2.5 times threshold. The results are compared to the corresponding intensity ratio predicted using excitation cross sections from distorted-wave calculations, which includes polarization, the M1(2s{sub 1/2} {yields} 1s{sub 1/2}) transition, and cascade contributions. Discrepancies are found that tend to confirm a recent report of a measurement of the Ly-{alpha} lines in Ti{sup 21+} performed on the Tokyo electron beam ion trap.

  20. Determination of alpha dose rate profile at the HLW nuclear glass/water interface

    NASA Astrophysics Data System (ADS)

    Mougnaud, S.; Tribet, M.; Rolland, S.; Renault, J.-P.; Jégou, C.

    2015-07-01

    Alpha irradiation and radiolysis can affect the alteration behavior of High Level Waste (HLW) nuclear glasses. In this study, the way the energy of alpha particles, emitted by a typical HLW glass, is deposited in water at the glass/water interface is investigated, with the aim of better characterizing the dose deposition at the glass/water interface during water-induced leaching mechanisms. A simplified chemical composition was considered for the nuclear glass under study, wherein the dose rate is about 140 Gy/h. The MCNPX calculation code was used to calculate alpha dose rate and alpha particle flux profiles at the glass/water interface in different systems: a single glass grain in water, a glass powder in water and a water-filled ideal crack in a glass package. Dose rate decreases within glass and in water as distance to the center of the grain increases. A general model has been proposed to fit a dose rate profile in water and in glass from values for dose rate in glass bulk, alpha range in water and linear energy transfer considerations. The glass powder simulation showed that there was systematic overlapping of radiation fields for neighboring glass grains, but the water dose rate always remained lower than the bulk value. Finally, for typical ideal cracks in a glass matrix, an overlapping of irradiation fields was observed while the crack aperture was lower than twice the alpha range in water. This led to significant values for the alpha dose rate within the crack volume, as long as the aperture remained lower than 60 μm.

  1. Dynamics of a surge observed in the C IV and H alpha lines

    NASA Technical Reports Server (NTRS)

    Schmieder, B.; Mein, P.; Vial, J.-C.; Tandberg-Hanssen, E.

    1983-01-01

    Time sequences of a surge have been obtained in Active Region 2701 during a coordinated SMY program, on October 2nd, 1980, while the MSDP spectrograph operated in H-alpha at the Meudon Solar Tower and the UVSP spectrometer on SMM observed in the 1548 A C IV resonance line. The cold (H-alpha) and hot (C IV) material follow the same channel, and the event lasts about 10 min in both lines. A good correlation is found between H-alpha and C IV velocities; radial velocities along the surge are in the range 40-60 km/s in both cases. The observations are consistent with the hypothesis that a pressure gradient drives the surge. The H-alpha data seem to indicate the presence of a shock wave in the chromosphere, while the C IV quantities (velocities, accelerations) vary on a very short time scale. Their maxima occur at some locations which could be interpreted as 'pinched' zones.

  2. Low-redshift Lyman-alpha absorption lines and the dark matter halos of disk galaxies

    NASA Technical Reports Server (NTRS)

    Maloney, Philip

    1992-01-01

    Ultraviolet observations of the low-redshift quasar 3C 273 using the Hubble Space Telescope have revealed many more Lyman-alpha absorption lines than would be expected from extrapolation of the absorption systems seen toward QSOs at z about 2. It is shown here that these absorption lines can plausibly be produced by gas at large radii in the disks of spiral and irregular galaxies; the gas is confined by the dark matter halos and ionized and heated by the extragalactic radiation field. This scenario does not require the extragalactic ionizing radiation field to decline as rapidly with decreasing z as the QSO emissivity. Observations of Ly-alpha absorption through the halos of known galaxies at low redshift will constrain both the extragalactic background and the properties of galactic halos.

  3. Low-redshift Lyman-alpha absorption lines and the dark matter halos of disk galaxies

    NASA Technical Reports Server (NTRS)

    Maloney, Philip

    1992-01-01

    Ultraviolet observations of the low-redshift quasar 3C 273 using the Hubble Space Telescope have revealed many more Lyman-alpha absorption lines than would be expected from extrapolation of the absorption systems seen toward QSOs at z about 2. It is shown here that these absorption lines can plausibly be produced by gas at large radii in the disks of spiral and irregular galaxies; the gas is confined by the dark matter halos and ionized and heated by the extragalactic radiation field. This scenario does not require the extragalactic ionizing radiation field to decline as rapidly with decreasing z as the QSO emissivity. Observations of Ly-alpha absorption through the halos of known galaxies at low redshift will constrain both the extragalactic background and the properties of galactic halos.

  4. DEVELOPMENT OF AN ON-LINE, REAL-TIME ALPHA RADIATION MEASURING INSTRUMENT FOR LIQUID STREAMS

    SciTech Connect

    1996-11-22

    The Department of Energy (DOE) has expressed a need for an on-line, real-time instrument for assaying alpha-emitting radionuclides (uranium and the transuranics) in effluent waters leaving DOE sites to ensure compliance with regulatory limits. Due to the short range of alpha particles in water ({approximately}40 Tm), it is necessary now to intermittently collect samples of water and send them to a central laboratory for analysis. A lengthy and costly procedure is used to separate and measure the radionuclides from each sample. Large variations in radionuclide concentrations in the water may go undetected due to the sporadic sampling. Even when detected, the reading may not be representative of the actual stream concentration. To address these issues, Tecogen, a division of Thermo Power Corporation, a Thermo Electron company, is developing a real-time, field-deployable, alpha monitor based on a solid-state silicon wafer semiconductor (patent pending, to be assigned to the Department of Energy). The Thermo Alpha Monitor (TAM) will serve to monitor effluent water streams (Subsurface Contaminants Focus Area) and will be suitable for process control of remediation as well as decontamination and decommissioning operations, such as monitoring scrubber or rinse water radioactivity levels (Mixed Waste Focus Area and D&D Focus Area). It would be applicable for assaying other liquids, such as oil, or solids after proper preconditioning. Rapid isotopic alpha air monitoring is also possible using this technology. This instrument for direct counting of alpha-emitters in aqueous streams is presently being developed by Thermo Power under a development program funded by the DOE Environmental Management program (DOE-EM), administered by the Morgantown Energy Technology Center (METC). Under this contract, Thermo Power has demonstrated a solid-state, silicon-based semiconductor instrument, which uses a proprietary film-based collection system to quantitatively extract the

  5. Path integral formalism for the spectral line shape in plasmas: Lyman-{alpha} with fine structure

    SciTech Connect

    Bedida, N.; Meftah, M. T.; Boland, D.; Stamm, R.

    2008-10-22

    We examine in this work the expression of the dipolar autocorrelation function for an emitter in the plasma using the path integrals formalism. The results for Lyman alpha lines with fine structure are retrieved in a compact formula. The expression of the dipolar autocorrelation function takes into account the ions dynamics and the fine structure effects. The electron's effect is represented by the impact operator {phi}{sub e} in the final formula.

  6. Detection and Characterisation of H-{alpha} Emission Lines from Gaia BP/RP Spectra

    SciTech Connect

    Jaenes, Juergen; Laur, Sven; Kolka, Indrek

    2008-12-05

    The Gaia probe, set to launch in 2011, will measure an estimated billion astronomical objects, producing an enormous amount of data. One of the data analysis tasks will be the identification and classification of measured objects. A vast majority of them will be 'ordinary' stars from our Galaxy but a certain percentage will belong to 'peculiar' objects. We are interested in detecting emission line stars (ELS). The characteristic feature of most ELS is the presence of a H-{alpha} emission line in their spectra. In the case of Gaia measurements, the influence of this line could be detected in low resolution prismatic spectra which will be recorded both in blue (BP) and red (RP) spectral region. In this work, we compare different algorithms for detecting and characterising H-{alpha} lines in Gaia spectra. These include a simple, integrated flux ratio-based algorithm and several machine learning algorithms, such as neural networks, support vector machines and support vector regression. We study line detection both from single-transit and over-sampled end-of-mission data.

  7. Metal line blanketing and opacity in the ultraviolet of alpha 2 Canum Venaticorum

    NASA Technical Reports Server (NTRS)

    Molnar, M. R.

    1972-01-01

    Ultraviolet photometry by OAO-2 was made of alpha 2 CVn covering the entire 5.5d period of this magnetic Ap variable. The light curves ranging from 1330 A to 3320 A indicate the dominant role of rare-earth line-blanketing in redistributing flux. In a broad depression of the continuum covering 2300-2600 A, scanner observations possibly identify strong lines of Eu III as major contributors to this feature. At maximum intensity of the rare-earth lines, the ultraviolet continuum shortward of 2900 A is greatly diminished while the longer wavelength regions into the visual become brighter. In addition, there is evidence that the hydrogen line opacity is variable and the photoionization edge of Si I at 1680 A is identified.

  8. Multiwavelength laser line profile sensing for agricultural crop characterization

    NASA Astrophysics Data System (ADS)

    Strothmann, Wolfram; Ruckelshausen, Arno; Hertzberg, Joachim

    2014-05-01

    Triangulation-based laser line profile sensing is a widely used technique for precise and fast 3D measurement in industrial applications. More recently, it is used for applications in the area of outdoor agricultural sensing as well. However, in many agricultural applications high resolution range data by itself is insufficient. There is also a strong need for local spectral intensity information. As a consequence the combination of image-based range scanners with spectral imaging is often necessary. Under varying environmental conditions this is a tedious and error-prone problem, though. In contrast, the novel approach shown here allows capturing range data along with spectral laser reflectance and pixel-wise backscattering information at multiple, selectable wavelengths using a single sensor system. The system consists of multiple continuous wave (CW) line lasers simultaneously captured by a single monochrome imager. A system ready to capture 3 line lasers at 100 Hz was set up. Line lasers at different wavelengths in the visible and NIR range can be combined in accordance with the requirements of a specific application. Consecutively captured images are matched using sum of absolute differences (SAD) in order for tracking relative movement between the sensor system and the analyzed object. This allows normalizing images before the evaluation of reflectance and scattering. Furthermore, the SAD-based matching is used for accurate assembly of range and reflectance information gathered from different laser lines. It results in 3D point clouds with spectral laser reflectance and backscattering information at multiple, selectable wavelengths available for each point.

  9. Formation of triads without the dihydropyridine receptor alpha subunits in cell lines from dysgenic skeletal muscle

    PubMed Central

    1996-01-01

    Muscular dysgenesis (mdg/mdg), a mutation of the skeletal muscle dihydropyridine receptor (DHPR) alpha 1 subunit, has served as a model to study the functions of the DHPR in excitation-contraction coupling and its role in triad formation. We have investigated the question of whether the lack of the DHPR in dysgenic skeletal muscle results in a failure of triad formation, using cell lines (GLT and NLT) derived from dysgenic (mdg/mdg) and normal (+/+) muscle, respectively. The lines were generated by transfection of myoblasts with a plasmid encoding a Large T antigen. Both cell lines express muscle-specific proteins and begin organization of sarcomeres as demonstrated by immunocytochemistry. Similar to primary cultures, dysgenic (GLT) myoblasts show a higher incidence of cell fusion than their normal counterparts (NLT). NLT myotubes develop spontaneous contractile activity, and fluorescent Ca2+ recordings show Ca2+ release in response to depolarization. In contrast, GLTs show neither spontaneous nor depolarization-induced Ca2+ transients, but do release Ca2+ from the sarcoplasmic reticulum (SR) in response to caffeine. Despite normal transverse tubule (T-tubule) formation, GLT myotubes lack the alpha 1 subunit of the skeletal muscle DHPR, and the alpha 2 subunit is mistargeted. Nevertheless, the ryanodine receptor (RyR) frequently develops its normal, clustered organization in the absence of both DHPR alpha subunits in the T-tubules. In EM, these RyR clusters correspond to T-tubule/SR junctions with regularly spaced feet. These findings provide conclusive evidence that interactions between the DHPR and RyR are not involved in the formation of triad junctions or in the normal organization of the RyR in the junctional SR. PMID:8707823

  10. Hepatic drug metabolizing profile of Flinders Sensitive Line rat model of depression.

    PubMed

    Kotsovolou, Olga; Ingelman-Sundberg, Magnus; Lang, Matti A; Marselos, Marios; Overstreet, David H; Papadopoulou-Daifoti, Zoi; Johanson, Inger; Fotopoulos, Andrew; Konstandi, Maria

    2010-08-16

    The Flinders Sensitive Line (FSL) rat model of depression exhibits some behavioral, neurochemical, and pharmacological features that have been reported in depressed patients and has been very effective in screening antidepressants. Major factor that determines the effectiveness and toxicity of a drug is the drug metabolizing capacity of the liver. Therefore, in order to discriminate possible differentiation in the hepatic drug metabolism between FSL rats and Sprague-Dawley (SD) controls, their hepatic metabolic profile was investigated in this study. The data showed decreased glutathione (GSH) content and glutathione S-transferase (GST) activity and lower expression of certain major CYP enzymes, including the CYP2B1, CYP2C11 and CYP2D1 in FSL rats compared to SD controls. In contrast, p-nitrophenol hydroxylase (PNP), 7-ethoxyresorufin-O-dealkylase (EROD) and 16alpha-testosterone hydroxylase activities were higher in FSL rats. Interestingly, the wide spread environmental pollutant benzo(alpha)pyrene (B(alpha)P) induced CYP1A1, CYP1A2, CYP2B1/2 and ALDH3c at a lesser extend in FSL than in SD rats, whereas the antidepressant mirtazapine (MIRT) up-regulated CYP1A1/2, CYP2C11, CYP2D1, CYP2E1 and CYP3A1/2, mainly, in FSL rats. The drug also further increased ALDH3c whereas suppressed GSH content in B(alpha)P-exposed FSL rats. In conclusion, several key enzymes of the hepatic biotransformation machinery are differentially expressed in FSL than in SD rats, a condition that may influence the outcome of drug therapy. The MIRT-induced up-regulation of several drug-metabolizing enzymes indicates the critical role of antidepressant treatment that should be always taken into account in the designing of treatment and interpretation of insufficient pharmacotherapy or drug toxicity.

  11. HST/COS SPECTRA OF DF Tau AND V4046 Sgr: FIRST DETECTION OF MOLECULAR HYDROGEN ABSORPTION AGAINST THE Ly{alpha} EMISSION LINE

    SciTech Connect

    Yang Hao; Linsky, Jeffrey L.; France, Kevin E-mail: jlinsky@jilau1.colorado.edu

    2011-03-20

    We report the first detection of molecular hydrogen (H{sub 2}) absorption in the Ly{alpha} emission line profiles of two classical T Tauri stars (CTTSs), DF Tau and V4046 Sgr, observed by the Hubble Space Telescope/Cosmic Origins Spectrograph. This absorption is the energy source for many of the Lyman-band H{sub 2} fluorescent lines commonly seen in the far-ultraviolet spectra of CTTSs. We find that the absorbed energy in the H{sub 2} pumping transitions from a portion of the Ly{alpha} line significantly differ from the amount of energy in the resulting fluorescent emission. By assuming additional absorption in the H I Ly{alpha} profile along our light of sight, we can correct the H{sub 2} absorption/emission ratios so that they are close to unity. The required H I absorption for DF Tau is at a velocity close to the radial velocity of the star, consistent with H I absorption in the edge-on disk and interstellar medium. For V4046 Sgr, a nearly face-on system, the required absorption is between +100 km s{sup -1} and +290 km s{sup -1}, most likely resulting from H I gas in the accretion columns falling onto the star.

  12. Line Profile Measurements of the Lunar Exospheric Sodium

    NASA Technical Reports Server (NTRS)

    Oliversen, Ronald J.; Mierkiewicz, Edwin J.; Line, Michael R.; Roesler, Fred L.; Lupie, Olivia L.

    2012-01-01

    We report ongoing results of a program to measure the lunar sodium exospheric line profile from near the lunar limb out to two lunar radii (approx 3500 km). These observations are conducted from the National Solar Observatory McMath-Pierce telescope using a dual-etalon Fabry-Perot spectrometer with a resolving power of 180,600 (1.7 km/s) to measure line widths and velocity shifts of the Na D2 (5889 950 A) emission line in equatorial and polar regions at different lunar phases. The typical field of view (FOV) is 3 arcmin (approx 360 km) with an occasional smaller 1 arcmin FOV used right at the limb edge. The first data were obtained from full Moon to 3 days following full Moon (waning phase) in March 2009 as part of a demonstration run aimed at establishing techniques for a thorough study of temperatures and velocity variations in the lunar sodium exosphere. These data indicate velocity displacements from different locations off the lunar limb range between 150 and 600 m/s from the lunar rest velocity with a precision of +/- 20 to +/- 50 m/s depending on brightness. The measured Doppler line widths for observations within 10.5 arcmin of the east and south lunar limbs for observations between 5 deg and 40 deg lunar phase imply temperatures ranging decreasing from 3250 +/- 260K to 1175 +/- 150K. Additional data is now being collected on a quarterly basis since March 2011 and preliminary results will be reported.

  13. Line Profile Measurements of the Lunar Exospheric Sodium

    NASA Technical Reports Server (NTRS)

    Oliversen, Ronald J.; Mierkiewicz, Edwin J.; Line, Michael R.; Roesler, Fred L.; Lupie, Olivia L.

    2012-01-01

    We report ongoing results of a program to measure the lunar sodium exospheric line profile from near the lunar limb out to two lunar radii (approx 3500 km). These observations are conducted from the National Solar Observatory McMath-Pierce telescope using a dual-etalon Fabry-Perot spectrometer with a resolving power of 180,600 (1.7 km/s) to measure line widths and velocity shifts of the Na D2 (5889 950 A) emission line in equatorial and polar regions at different lunar phases. The typical field of view (FOV) is 3 arcmin (approx 360 km) with an occasional smaller 1 arcmin FOV used right at the limb edge. The first data were obtained from full Moon to 3 days following full Moon (waning phase) in March 2009 as part of a demonstration run aimed at establishing techniques for a thorough study of temperatures and velocity variations in the lunar sodium exosphere. These data indicate velocity displacements from different locations off the lunar limb range between 150 and 600 m/s from the lunar rest velocity with a precision of +/- 20 to +/- 50 m/s depending on brightness. The measured Doppler line widths for observations within 10.5 arcmin of the east and south lunar limbs for observations between 5 deg and 40 deg lunar phase imply temperatures ranging decreasing from 3250 +/- 260K to 1175 +/- 150K. Additional data is now being collected on a quarterly basis since March 2011 and preliminary results will be reported.

  14. Fast variations in the ultraviolet resonance lines of Alpha Camelopardalis (O9.5 Ia) - Evidence for blobs in the wind

    NASA Technical Reports Server (NTRS)

    Lamers, Henry J. G. L. M.; Snow, Theodore P.; De Jager, Cornelis; Langerwerf, A.

    1988-01-01

    The 72 IUE spectra of Alpha Cam and 19 IUE spectra of Kappa Cas, obtained during 72 hours of continuous IUE time in September 1978 were searched for variations in the profiles of the resonance lines of Si IV, C IV, and N V, and the results are discussed. The UV resonance lines in the spectra of Alpha Cam showed variations at the 2 percent level near -1800, -700, and +700 km/s. The first two variations can be explained by absorption components of outward-accelerated blobs or shells with an average acceleration of 1.5 cm/sq s. The characteristics of the blobs and shells are discussed, including the column densities and masses. No variations were found in the spectra of Kappa Cas.

  15. Theoretical determination of characteristic x-ray lines and the copper K alpha spectrum.

    PubMed

    Chantler, C T; Hayward, A C L; Grant, I P

    2009-09-18

    Core excitations above the K edge result in K alpha characteristic x-ray emission. Understanding these spectra is crucial for high accuracies in investigations into QED, near-edge x-ray structure and advanced crystallography. We address unresolved quantitative discrepancies between experiment and theory for copper. These discrepancies arise from an incomplete treatment of electronic interactions. By finding solutions to relativistic multiconfigurational Dirac-Fock equations accounting for correlation and exchange corrections, we obtain an accurate reproduction of the peak energies, excellent agreement of theory with experiment for the line shapes, good convergence between gauges, and account for the K alpha doublet ratio of 0.522 +/- 0.003ratio1.

  16. Signatures of disk structure from line profile variability

    NASA Astrophysics Data System (ADS)

    Powell, Stacie; Latham, D. W.; Irwin, M.; Bouvier, J.; Clarke, C.; Facchini, S.

    2014-01-01

    Despite the abundance of FU Orionis objects (FUors) in the solar neighborhood and the implied repetitive nature of this episodic accretion phenomenon in low-mass stars, the triggering mechanism within the disk, propagation from the disk to the wind and the implications of these outbursts on planet formation remain unclear. FUors are young stars where disk accretion increases from 10-7 to 10-4 M⊙ yr-1 within a decade, with a slow decline of over 100 years. These systems provide a unique opportunity to observe the inner disk photosphere in optical light. Previous observations of the prototype FU Orionis by Herbig et al. (2003) suggest that the wind and disk photospheric lines are modulated with periods of 14.54 and 3.54 days, respectively. We have re-observed the system at higher resolution with SOPHIE and TRES, by monitoring variations of optical line profiles over 21 nights in 2007 and 35 nights in 2012-13. We detect wind periods of 13 days and 10 days (present in the latter epoch only), which are manifested not only in blueshifted Hα absorption, as found previously, but also in redshifted emission of Hα and Hβ, as well as in blueshifted absorption of Na I D, Li I and Fe II λ5018. We discuss the potential configurations responsible for the two distinct wind modulations in this system. In addition the disk photospheric lines show periods of 3.6 and 3.2 days in 2007 and 2012-13, respectively. Remarkably, this implies variability mechanisms that are stable against shear over at least 15 years (>1000 orbits); we tentatively ascribe this to an orbiting hotspot in the disk. We have monitored the velocity shift of these periodic variations for the first time, which are confined to the blue wing of the line profiles and centered on velocities of -9 and -60 km s-1 in 2007 and 2013, respectively. We discuss the possibility of an embedded hot Jupiter precessing on an inclined orbit relative to the disk to explain the different velocities of the detected periodic signal

  17. Line profile variability in the massive binary HD 152219

    NASA Astrophysics Data System (ADS)

    Sana, H.; Gosset, E.

    2009-07-01

    HD 152219 is a massive binary system with O9.5 III and B1-2 III/V components and a short orbital period of 4.2 d. In a previous work, we showed that the primary star (M_{prim}˜21 M_⊙) was presenting clear line profile variabilities (LPVs) that might be caused by nonradial pulsations (NRPs). In the present work, we report on an intensive spectroscopic monitoring, that aimed at unveiling the nature of the detected LPVs. Based on this new data set, we discard the NRPs and point out the Rossiter-McLaughlin effect as % being the cause of the observed LPVs. The upper limit derived on the amplitude of undetected NRPs, if any, is set at a couple of part per thousands of the continuum level.

  18. Line profile modelling for multi-pixel CZT detectors

    NASA Astrophysics Data System (ADS)

    Chattopadhyay, T.; Vadawale, S. V.; Rao, A. R.; Bhattacharya, D.; Mithun, N. P. S.; Bhalerao, V.

    2016-07-01

    Cadmium Zinc Telluride (CZT) detectors have been the mainstay for hard X-ray astronomy for its high quantum efficiency, fine energy resolution, near room temperature operation, and radiation hardness. In order to fully utilize the spectroscopic capabilities of CZT detectors, it is important to generate accurate response matrix, which in turn requires precise modelling of the line profiles for the CZT detectors. We have developed a numerical model taking into account the mobility and lifetime of the charge carriers and intrpixel charge sharing for the CZT detectors. This paper describes the details of the modelling along with the experimental measurements of mobility, lifetime and charge sharing fractions for the CZT detector modules of thickness of 5 mm and 2.5 mm pixel size procured from Orbotech Medical Solutions (same modules used in AstroSat-CZTI).

  19. Venus - On the phase variation of CO2 line profiles

    NASA Technical Reports Server (NTRS)

    Macy, W., Jr.; Trafton, L.; Barker, E.

    1977-01-01

    The shapes of Venus' CO2 profiles are found to vary with solar phase angle. High-resolution spectra of the P16 and P14 lines in the 8689- and 7820-A bands, respectively, are presented for phase angles ranging from 6 to 158 deg. The scattering mean free path at 80 mbar, approximately the effective pressure, is 1.7 km. Use of the van de Hulst (1974) similarity relations with simple parametric scattering models is inadequate to separate effects due to the scattering phase function from those due to inhomogeneities in depth when one attempts to determine the atmospheric structure by fitting a family of such models over a wide range of phase angles.

  20. On the atomic line profiles in high pressure plasmas

    SciTech Connect

    Janssen, J. F. J.; Gnybida, M.; Rijke, A. J.; Dijk, J. van; Suijker, J. L. G.

    2013-11-14

    In a previous contribution to this journal [H. P. Stormberg, J. Appl. Phys. 51(4), 1963 (1980)], Stormberg presented an analytical expression for the convolution of Lorentz and Levy line profiles, which models atomic radiative transitions in high pressure plasmas. Unfortunately, the derivations are flawed with errors and the final expression, while correct, is accompanied by misguiding comments about the meaning of the symbols used therein, in particular the “complex error function.” In this paper, we discuss the broadening mechanisms that give rise to Stormberg's model and present a correct derivation of his final result. We will also provide an alternative expression, based on the Faddeeva function, which has decisive computational advantages and emphasizes the real-valuedness of the result. The MATLAB/Octave scripts of our implementation have been made available on the publisher's website for future reference.

  1. Characterization of G-protein alpha subunits in the Gq class: expression in murine tissues and in stromal and hematopoietic cell lines.

    PubMed Central

    Wilkie, T M; Scherle, P A; Strathmann, M P; Slepak, V Z; Simon, M I

    1991-01-01

    Murine G alpha 14 and G alpha 15 cDNAs encode distinct alpha subunits of heterotrimeric guanine nucleotide-binding proteins (G proteins). These alpha subunits are related to members of the Gq class and share certain sequence characteristics with G alpha q, G alpha 11, and G alpha 16, such as the absence of a pertussis toxin ADP-ribosylation site. G alpha 11 and G alpha q are ubiquitously expressed among murine tissues but G alpha 14 is predominantly expressed in spleen, lung, kidney, and testis whereas G alpha 15 is primarily restricted to hematopoietic lineages. Among hematopoietic cell lines, G alpha 11 mRNA is found in all cell lines tested, G alpha q is expressed widely but is not found in most T-cell lines, G alpha 15 is predominantly expressed in myeloid and B-cell lineages, and G alpha 14 is expressed in bone marrow adherent (stromal) cells, certain early myeloid cells, and progenitor B cells. Polyclonal antisera produced from synthetic peptides that correspond to two regions of G alpha 15 react with a protein of 42 kDa expressed in B-cell membranes and in Escherichia coli transformed with G alpha 15 cDNA. The expression patterns that were observed in mouse tissues and cell lines indicate that each of the alpha subunits in the Gq class may be involved in pertussis toxin-insensitive signal-transduction pathways that are fundamental to hematopoietic cell differentiation and function. Images PMID:1946421

  2. Infrared line shape of an alpha-carbon deuterium-labeled amino acid.

    PubMed

    Kinnaman, Carrie S; Cremeens, Matthew E; Romesberg, Floyd E; Corcelli, Steven A

    2006-10-18

    The viability of alpha-carbon deuterated bonds (Calpha-D) as infrared (IR) probes of protein backbone dynamics was explored through a combination of experiment and theory. alpha-Carbon deuterated alanine (Ala-d1) served as a convenient model system for a comparison of experiment, density functional theory (DFT), and combined quantum mechanical/molecular mechanical (QM/MM) simulations of the Calpha-D IR line shape. In addition to the primary Calpha-D absorption, the experimental spectrum contains three features that likely result from Fermi resonances. DFT calculations supported the assignments and identified the lower frequency modes participating in the Fermi resonances. A QM/MM simulation of the Ala-d1 line shape was in qualitative agreement with the experiment, including the presence of classical analogues of Fermi resonances. These studies demonstrated that the Calpha-D line shape is sensitive, via Fermi resonances, to lower frequency collective vibrations that are expected to play a role in protein dynamics and function, and that the QM/MM approach, which is applicable to proteins, is capable of aiding in their interpretation.

  3. THE DIFFERENCE IN NARROW Fe K{alpha} LINE EMISSION BETWEEN SEYFERT 1 AND SEYFERT 2 GALAXIES

    SciTech Connect

    Liu Teng; Wang Junxian E-mail: jxw@ustc.edu.c

    2010-12-20

    We compile a sample of 89 Seyfert galaxies with both [O IV] 25.89 {mu}m line luminosities observed by Spitzer IRS and X-ray spectra observed by XMM-Newton EPIC. Using [O IV] emission as a proxy for active galactic nucleus (AGN) intrinsic luminosity, we find that although type 2 AGNs have higher line equivalent widths, the narrow Fe K{alpha} lines in Compton-thin and Compton-thick Seyfert 2 galaxies are 2.9{sup +0.8}{sub -0.6} and 5.6{sup +1.9}{sub -1.4} times weaker in terms of luminosity than Seyfert 1 galaxies, respectively. This indicates that different correction factors need to be applied for various types of AGNs before the narrow Fe K{alpha} line luminosity could serve as an intrinsic AGN luminosity indicator. We also find that Seyfert 1 galaxies in our sample have on average marginally larger line widths and higher line centroid energies, suggesting contamination from highly ionized Fe line or broader line emission from much smaller radius, but this effect is too weak to explain the large difference in narrow Fe K{alpha} line luminosity between type 1 and type 2 AGNs. This is the first observational evidence showing that the narrow Fe K{alpha} line emission in AGNs is anisotropic. The observed difference is consistent with theoretical calculations assuming a smoothly distributed obscuring torus and could provide independent constraints on the clumpiness of the torus.

  4. High-resolution measurements, line identification, and spectral modeling of K{alpha} transitions in Fe XVIII-XXV

    SciTech Connect

    Beiersdorfer, P.; Phillips, T.; Jacobs, V.L.; Hill, K.W.; Bitter, M.; von Goeler, S.; Kahn, S.M.

    1992-11-01

    The iron K{alpha} emission spectrum covering the wavelength region from 1.840 to 1.940 {Angstrom} is analyzed. Measurements are made with a high-resolution Bragg crystal spectrometer on the Princeton Large Torus (PLT) tokamak for plasma conditions which closely resemble those of solar flares. A total of 40 features are identified consisting of either single or multiple lines from eight charge states in iron, Fe XVIII through Fe XXV, and their wavelengths are determined with an accuracy of 0.1--0.4 m{Angstrom}. Many of these features are identified for the first time. In the interpretation of our observations we rely on model calculations that determine the ionic species abundances from electron density and temperature profiles measured independently with non-spectroscopic techniques and that incorporate theoretical collisional excitation and dielectronic recombination rates resulting in the excitation of the 1s2s{sup r}2p{sup s} configurations. The model calculations also include the effect of diffusive ion transport. Good overall agreement between the model calculations and the observations is obtained, which gives us confidence in our line identifications and spectral modeling capabilities. The results are compared with earlier analyses of the K{alpha} emission from the Sun. While many similarities are found, a few differences arise from the somewhat higher electron density in tokamak plasmas (10{sup 13} cm{sup {minus}3}), which affects the fine-structure level populations of the ground states of the initial ion undergoing electron-impact excitation or dielectronic recombination. We also find that several spectral features are comprised of different transitions from those reported in earlier analyses of solar data.

  5. High-resolution measurements, line identification, and spectral modeling of K[alpha] transitions in Fe XVIII-XXV

    SciTech Connect

    Beiersdorfer, P.; Phillips, T. ); Jacobs, V.L. . Condensed Matter and Radiation Sciences Div.); Hill, K.W.; Bitter, M.; von Goeler, S. . Plasma Physics Lab.); Kahn, S.M. )

    1992-11-01

    The iron K[alpha] emission spectrum covering the wavelength region from 1.840 to 1.940 [Angstrom] is analyzed. Measurements are made with a high-resolution Bragg crystal spectrometer on the Princeton Large Torus (PLT) tokamak for plasma conditions which closely resemble those of solar flares. A total of 40 features are identified consisting of either single or multiple lines from eight charge states in iron, Fe XVIII through Fe XXV, and their wavelengths are determined with an accuracy of 0.1--0.4 m[Angstrom]. Many of these features are identified for the first time. In the interpretation of our observations we rely on model calculations that determine the ionic species abundances from electron density and temperature profiles measured independently with non-spectroscopic techniques and that incorporate theoretical collisional excitation and dielectronic recombination rates resulting in the excitation of the 1s2s[sup r]2p[sup s] configurations. The model calculations also include the effect of diffusive ion transport. Good overall agreement between the model calculations and the observations is obtained, which gives us confidence in our line identifications and spectral modeling capabilities. The results are compared with earlier analyses of the K[alpha] emission from the Sun. While many similarities are found, a few differences arise from the somewhat higher electron density in tokamak plasmas (10[sup 13] cm[sup [minus]3]), which affects the fine-structure level populations of the ground states of the initial ion undergoing electron-impact excitation or dielectronic recombination. We also find that several spectral features are comprised of different transitions from those reported in earlier analyses of solar data.

  6. Calibration of H-alpha/H-beta Indexes for Emission Line Objects

    NASA Astrophysics Data System (ADS)

    Hintz, Eric G.; Joner, Michael D.

    2016-01-01

    In Joner and Hintz (2015) they report on a standard star system for calibration of H-alpha and H-beta observations. This work was based on data obtained with the Dominion Astrophysical Observatory 1.2-m telescope. As part of the data acquisition for that project, a large number of emission line objects were also observed. We will report on the preliminary results for the emission line data set. This will include a comparison of equivalent width measurements of each line with the matching index. We will also examine the relation between the absorption line objects previously published and the emission line objects, along with a discussion of the transition point. Object types included are Be stars, high mass x-ray binaries, one low mass x-ray binary, Herbig Ae/Be stars, pre-main sequence stars, T Tauri stars, young stellar objects, and one BY Draconis star. Some of these objects come from Cygnus OB-2, NGC 659, NGC 663, NGC 869 and NGC 884.

  7. The interstellar medium near the sun. II - The line of sight to Alpha Virginis

    NASA Technical Reports Server (NTRS)

    York, D. G.; Kinahan, B. F.

    1979-01-01

    Measurements of the UV interstellar lines in Alpha Vir between 935 and 2960 A are reported. The derived abundances indicate significant depletion of Al, Si, Mn, Fe, and possibly Mg, whereas S, C, Ar, and O appear to be essentially undepleted. About half the gas is shown to be ionized, with a mean electron density of no more than 1 per cu cm, and the remainder is neutral, though both regions have the same velocity to within 2 km/s. A small fraction of the gas is apparently at a temperature of 400,000 K. The possibility of measuring the temperature of the H I gas is discussed, using the observed relationship between Doppler width and mass. A detailed discussion is included of the data analysis useful for comparatively simple lines of sight in terms of density, temperature, and extent of the possible physical regions, and of the relevant radiation field. An unidentified feature at 1063.2 A is reported.

  8. Interferon-alpha down-regulates the interleukin-6 receptor in a human multiple myeloma cell line, U266.

    PubMed Central

    Anthes, J C; Zhan, Z; Gilchrest, H; Egan, R W; Siegel, M I; Billah, M M

    1995-01-01

    The effects of interferon-alpha (IFN-alpha) on the interleukin-6 (IL-6) receptor in a multiple myeloma cell line, U266, have been examined. IFN-alpha inhibits [3H]thymidine incorporation in U266 cells in a time- and dose-dependent manner. Furthermore, IFN-alpha inhibits the ability of IL-6 to induce increases in [3H]thymidine incorporation. While IFN-alpha suppresses the ability of 125I-IL-6 to bind to the IL-6 receptor on U266 cells, this effect is not due to competition of IFN-alpha with IL-6 for the IL-6 receptor. Although IFN-alpha induces IL-6 synthesis in the U266 cell, inhibition of IL-6 binding occurs when IL-6 synthesis is minimal. Furthermore, after pretreatment of U266 cells with neutralizing anti-IL-6 antibodies, IFN-alpha still inhibits 125I-IL-6 binding. These data suggest that IFN-alpha inhibition of 125I-IL-6 binding does not involve IL-6 synthesis. IFN-alpha reduces 125I-IL-6 binding without affecting its affinity, suggesting that IFN-alpha inhibits IL-6 receptor expression. Although pretreatment with cycloheximide inhibits 125I-IL-6 binding, IFN-alpha does not cause a selective decrease in the levels of gp130 or IL-6 receptor mRNA at times when 125I-IL-6 binding is inhibited. These observations indicate that IFN-alpha lowers IL-6 receptor density on U266 cells by mechanisms other than competitive binding or lowering IL-6 receptor mRNA production. Receptor down-regulation may be a mechanism of IFN-alpha-induced inhibition of growth in U266 cells. Images Figure 9 PMID:7619053

  9. Pharmacological profiles of a novel alpha 1-adrenoceptor agonist, PNO-49B, at alpha 1-adrenoceptor subtypes.

    PubMed

    Muramatsu, I; Ohmura, T; Kigoshi, S

    1995-01-01

    The effects of a newly synthesized compound, PNO-49B, (R)-(-)-3'-(2-amino-1-hydroxyethyl)-4'-fluoromethanesulfonanilide hydrochloride, on alpha 1-adrenoceptor subtypes were examined in various tissues in which the following distribution of alpha 1-adrenoceptor subtypes has been suggested: dog carotid artery (alpha 1B), dog mesenteric artery (alpha 1N), rabbit thoracic aorta (alpha 1B + alpha 1L), rat liver (alpha 1B), rat vas deferens (alpha 1A + alpha 1L), rat cerebral cortex (alpha 1A + alpha 1B) and rat thoracic aorta (controversial subtype). PNO-49B (0.1-100 microM) produced concentration-dependent contractions in dog mesenteric artery, rabbit thoracic aorta, rat thoracic aorta and rat vas deferens; and the maximal amplitudes of contraction were almost the same as or slightly less than those of noradrenaline. By contrast, the maximal response to PNO-49B in dog carotid artery was markedly smaller than the response to noradrenaline. In rabbit thoracic aorta, the contractile response to PNO-49B was not affected by inactivation of the alpha 1B subtype with chloroethylclonidine (CEC), although the response to noradrenaline was attenuated by that treatment. The dissociation constants (KA) of PNO-49B were not different among the rat thoracic aorta, dog carotid and mesenteric arteries and rabbit thoracic aorta (CEC-pretreated). The contractile responses to PNO-49B were inhibited competitively by prazosin, HV723 (alpha-ethyl-3,4,5-trimethoxy-alpha-(3-((2-(2-methoxyphenoxy)-ethyl)- amino(propyl)benzeneacetonitrile fumarate) and by WB4101 (2-(2,6-dimethoxyphenoxyethyl)-aminomethyl-1,4- benzodioxane).(ABSTRACT TRUNCATED AT 250 WORDS)

  10. Alpha/sub 2/-adrenergic receptors on a platelet precursor cell line, HEL

    SciTech Connect

    McKernan, R.M.; Motulsky, H.J.; Rozansky, D.; Insel, P.A.

    1986-03-01

    The authors have identified ..cap alpha../sub 2/-adrenergic receptors on human erythroleukemia HEL cells, a suspension-growing, bone-marrow-derived cell line related to human platelets. Intact HEL cells were studied using radioligand binding and cAMP accumulation assays. The authors identified saturable specific binding of the ..cap alpha../sub 2/-antagonist (/sup 3/H)yohimbine (yoh) in cells incubated at 37/sup 0/C for 1 hr (B/sub max/ 5900 +/- 2100 sites/cell, K/sub d/ 3.6 +/- 0.9 nM, n = 7). Competition for (/sup 3/H)yoh binding sites with antagonists confirmed that these sites were similar to human ..cap alpha../sub 2/-adrenoceptors from platelets and other resources, as typified by their high affinity for WY-26392, yohimbine and idazoxan, and very low affinity for prazosin. Studies at 37/sup 0/C revealed a low affinity of these sites for catecholamines (K/sub i/ for (-)-epinephrine, 21 ..mu..M; (-)-norepinephrine, 45 ..mu..M, (+)-epinephrine, 80 ..mu..M). When experiments were conducted at 4 /sup 0/C, (-)-epinephrine was able to compete for only 50-60% of the sites specifically labelled by (/sup 3/H)yoh at 37/sup 0/, but (-)-epinephrine had an approximately 10-fold greater affinity for these sites (K/sub i/ at 4 /sup 0/C = 2.4 ..mu..M). In addition, epinephrine inhibited cAMP accumulation stimulated by forskolin and PGE/sub 1/ in HEL cells; this response was inhibited by pertussis toxin. The authors conclude that HEL cells possess ..cap alpha../sub 2/-adrenergic receptors linked to G/sub i/ and thus should serve as a useful model to explore metabolism and regulation of these receptors in human cells.

  11. First Detection of a Foreground Damped Ly-Alpha Absorber Along a GRB Line of Sight?

    NASA Technical Reports Server (NTRS)

    Vreeswijk, P. M.; Fruchter, A. S.; Pian, E.; Rol, E.; Wijers, R. A. M. J.; Kouveliotou, C.; Kaper, L.; Palazzi, E.; Masetti, N.; Frontera, F.; hide

    2001-01-01

    We present a VLT spectrum of the optical afterglow of GRB 991216, taken 1.5 days after the burst, and HST (Hubble Space Telescope) imaging of the host galaxy, obtained four months later. The spectrum contains three metal absorption-line systems with redshifts z = 1.024, z = 0.803, and z = 0.771, where the highest redshift most likely reflects the distance to the host galaxy. For the z = 1.024 and z = 0.803 systems we tentatively detect MgI which suggests a dense environment at these redshifts. This and the strength of the z = 0.803 Fe lines indicate that this system very likely is a damped Ly-alpha absorber (DLA), which would be the first foreground DLA to be detected along a GRB afterglow sight line. The HST images are consistent with these findings: they show two blobs of light, one underneath the projected OT position, the presumed host galaxy, and the other 0.6" away, which is probably responsible for the absorption lines at z = 0.803. The lowest redshift system can be explained by either one of the two galaxies that are located roughly 2" away from the transient. Including these newly found systems, the total number of DLAS and Lyman limit systems along GRB afterglow sight lines is consistent with the number expected from QSO (quasi-stellar object) absorption line studies. We expect early spectroscopy of GRB afterglows to significantly increase the number of detected foreground absorption systems, and we discuss some advantages over QSO lines of sight.

  12. First Detection of a Foreground Damped Ly-Alpha Absorber Along a GRB Line of Sight?

    NASA Technical Reports Server (NTRS)

    Vreeswijk, P. M.; Fruchter, A. S.; Pian, E.; Rol, E.; Wijers, R. A. M. J.; Kouveliotou, C.; Kaper, L.; Palazzi, E.; Masetti, N.; Frontera, F.; Rose, M. Franklin (Technical Monitor)

    2001-01-01

    We present a VLT spectrum of the optical afterglow of GRB 991216, taken 1.5 days after the burst, and HST (Hubble Space Telescope) imaging of the host galaxy, obtained four months later. The spectrum contains three metal absorption-line systems with redshifts z = 1.024, z = 0.803, and z = 0.771, where the highest redshift most likely reflects the distance to the host galaxy. For the z = 1.024 and z = 0.803 systems we tentatively detect MgI which suggests a dense environment at these redshifts. This and the strength of the z = 0.803 Fe lines indicate that this system very likely is a damped Ly-alpha absorber (DLA), which would be the first foreground DLA to be detected along a GRB afterglow sight line. The HST images are consistent with these findings: they show two blobs of light, one underneath the projected OT position, the presumed host galaxy, and the other 0.6" away, which is probably responsible for the absorption lines at z = 0.803. The lowest redshift system can be explained by either one of the two galaxies that are located roughly 2" away from the transient. Including these newly found systems, the total number of DLAS and Lyman limit systems along GRB afterglow sight lines is consistent with the number expected from QSO (quasi-stellar object) absorption line studies. We expect early spectroscopy of GRB afterglows to significantly increase the number of detected foreground absorption systems, and we discuss some advantages over QSO lines of sight.

  13. Shapes of Fe K{sub {alpha}} lines from annuli near black holes

    SciTech Connect

    Zakharov, A. F.

    2007-01-15

    Recent x-ray observations of microquasars and Seyfert galaxies reveal broad emission lines in their spectra, which can arise in the innermost parts of accretion disks. We consider a radiating annulus model to simulate spectral line shapes. That is a natural approximation for narrow emitting circular rings without extra astrophysical assumptions about emissivity laws. Recently, Mueller and Camenzind (Astron. Astrophys. 413, 861 (2004)) presented results of their calculations and classified different types of spectral line shapes and described their origin. We clarified their hypothesis about an origin of double peaked and double horned line shapes. On the basis of results of numerical simulations, we showed that double peaked spectral lines arise almost for any locations of narrow emission rings (annuli), although Mueller and Camenzind claimed that such profiles arise for relatively flat spacetimes and typical radii for emission region of about 25r{sub g}. We showed that triangular spectral lines could arise for nearest annuli and high inclination angles. We discuss a possibility of appearance of narrow spectral line shapes as a result of spiraling evolution of matter along quasi-circular orbits which could be approximated by narrow annuli.

  14. Apoptosis induced by tumor necrosis factor-alpha in rat hepatocyte cell lines expressing hepatitis B virus.

    PubMed Central

    Guilhot, S.; Miller, T.; Cornman, G.; Isom, H. C.

    1996-01-01

    Three well differentiated SV40-immortalized rat hepatocyte cell lines, CWSV1, CWSV2, and CWSV14, and Hepatitis B Virus (HBV)-producing cell lines derived from them were examined for sensitivity to tumor necrosis factor (TNF)-alpha. CWSV1, CWSV2, and CWSV14 cells were co-transfected with a DNA construct containing a dimer of the HBV genome and the neo gene and selected in G418 to generate stable cell lines. Characterization of these cell lines indicated that they contain integrated HBV DNA, contain low molecular weight HBV DNA compatible with the presence of HBV replication intermediates, express HBV transcripts, and produce HBV proteins. The viability of CWSV1, CWSV2, and CWSV2 cells was not significantly altered when they were treated with TNF-alpha at concentrations as high as 20,000 U/ml. The HBV-expressing CWSV1 cell line, SV1di36, and the HBV-expressing CWSV14 cell line, SV14di208, were also not killed when treated with TNF-alpha. However, the HBV-expressing CWSV2 cell line, SV2di366, was extensively killed when treated with TNF-alpha at concentrations ranging from 200 to 20,000 U/ml. Analysis of several different HBV-producing CWSV2 cell lines indicated that TNF-alpha killing depended upon the level of HBV expression. The TNF-alpha-induced cell killing in high HBV-producing CWSV2 cell lines was accompanied by the presence of an oligonucleosomal DNA ladder characteristic of apoptosis. Images Figure 2 Figure 3 Figure 4 Figure 6 Figure 9 Figure 10 Figure 11 PMID:8774135

  15. A new method for the identification of non-Gaussian line profiles in elliptical galaxies

    NASA Technical Reports Server (NTRS)

    Van Der Marel, Roeland P.; Franx, Marijn

    1993-01-01

    A new parameterization for the line profiles of elliptical galaxies, the Gauss-Hermite series, is proposed. This approach expands the line profile as a sum of orthogonal functions which minimizes the correlations between the errors in the parameters of the fit. This method also make use of the fact that Gaussians provide good low-order fits to observed line profiles. The method yields measurements of the line strength, mean radial velocity, and the velocity dispersion as well as two extra parameters, h3 and h4, that measure asymmetric and symmetric deviations of the line profiles from a Gaussian, respectively. The new method was used to derive profiles for three elliptical galaxies which all have asymmetric line profiles on the major axis with symmetric deviations from a Gaussian. Results confirm that elliptical galaxies have complex structures due to their complex formation history.

  16. GAS MOTION STUDY OF Ly{alpha} EMITTERS AT z {approx} 2 USING FUV AND OPTICAL SPECTRAL LINES {sup ,}

    SciTech Connect

    Hashimoto, Takuya; Shimasaku, Kazuhiro; Nakajima, Kimihiko; Ouchi, Masami; Ono, Yoshiaki; Rauch, Michael; Janice Lee; Okamura, Sadanori

    2013-03-01

    We present the results of Magellan/MMIRS and Keck/NIRSPEC spectroscopy for five Ly{alpha} emitters (LAEs) at z {approx_equal} 2.2 for which high-resolution FUV spectra from Magellan/MagE are available. We detect nebular emission lines including H{alpha} on the individual basis and low-ionization interstellar (LIS) absorption lines in a stacked FUV spectrum, and measure average offset velocities of the Ly{alpha} line, {Delta}v {sub Ly{alpha}}, and LIS absorption lines, {Delta}v {sub abs}, with respect to the systemic velocity defined by the nebular lines. For a sample of eight z {approx} 2-3 LAEs without active galactic nucleus from our study and the literature, we obtain {Delta}v {sub Ly{alpha}} = 175 {+-} 35 km s{sup -1}, which is significantly smaller than that of Lyman-break Galaxies (LBGs), {Delta}v {sub Ly{alpha}} {approx_equal} 400 km s{sup -1}. The stacked FUV spectrum gives {Delta}v {sub abs} = -179 {+-} 73 km s{sup -1}, comparable to that of LBGs. These positive {Delta}v {sub Ly{alpha}} and negative {Delta}v {sub abs} suggest that LAEs also have outflows. In contrast to LBGs, however, the LAEs' {Delta}v {sub Ly{alpha}} is as small as |{Delta}v {sub abs}|, suggesting low neutral hydrogen column densities. Such a low column density with a small number of resonant scattering may cause the observed strong Ly{alpha} emission of LAEs. We find an anti-correlation between Ly{alpha} equivalent width (EW) and {Delta}v {sub Ly{alpha}} in a compilation of LAE and LBG samples. Although its physical origin is not clear, this anti-correlation result appears to challenge the hypothesis that a strong outflow, by means of a reduced number of resonant scattering, produces a large EW. If LAEs at z > 6 have similarly small {Delta}v {sub Ly{alpha}} values, constraints on the reionization history derived from the Ly{alpha} transmissivity may need to be revised.

  17. Alpha-2 adrenergic and serotonin-1B receptors in the OK cell, an opossum kidney cell line

    SciTech Connect

    Murphy, T.J.

    1988-01-01

    Alpha-2 adrenergic and serotonin-1B (5HT{sub 1B}) receptors, both negatively-coupled to adenylyl cyclase, were characterized in the OK cell line, a renal proximal tubule epithelial cell line derived from the kidney of a North American opossum. In membrane saturation radioligand binding experiments, ({sup 3}H)yohimbine and ({sup 3}H)rauwolscine labeled an equivalent number of binding sites. Detailed pharmacological analysis of OK cell alpha-2 adrenergic receptors in competition binding assays indicate this receptor is neither an alpha-2A nor an alpha-2B adrenergic receptor subtype, although the alpha-2B receptor subtype-selective drugs prazosin, ARC-239 and chlorpromazine have affinities for OK cell alpha-2 adrenergic receptors similar to those at the alpha-2B receptor subtype. Determinations of agonist potency for inhibition of PTH-stimulated cyclic AMP production and radioligand binding analysis using ({sup 125}I)({minus})-cyanopindolol indicate that a 5HT{sub 1B} receptor is expressed in the OK cell line. A biochemical effector system coupled to this receptor subtype has not been previously described. Several compounds appear to be potent agonists at the 5TH{sub 1B} receptor including the beta adrenergic antagonists cyanopindolol, pindolol, propranolol and alprenolol.

  18. Evolution of Iron K Alpha Line Emission in the Black Hole Candidate GX 339-4

    NASA Technical Reports Server (NTRS)

    Feng, Y. X.; Zhang, S. N.; Sun, X.; Durouchoux, Ph.; Chen, Wan; Cui, Wei

    2001-01-01

    GX 339-4 was regularly monitored with the Rossi X-Ray Timing Explorer during a period (in 1999) when its X-ray flux decreased significantly (from 4.26 x 10(exp -10) to 7.6 x 10(exp -12) ergs in the 3-20 keV band), as the source settled into the 'off state.' Our spectral analysis revealed the presence of a prominent iron K alpha line in the observed spectrum of the source for all observations. The line shows an interesting evolution: it is centered at approx. 6.4 keV when the measured flux is above 5 x 10(exp -1) ergs per sq cm/s but is shifted to approx. 6.7 keV at lower fluxes. The equivalent width of the line appears to increase significantly toward lower fluxes, although it is likely to be sensitive to calibration uncertainties. While the fluorescent emission of neutral or mildly ionized iron atoms in the accretion disk can perhaps account for the 6.4 keV line, as is often invoked for black hole candidates, it seems difficult to understand the 6.7 keV line with this mechanism because the disk should be less ionized at lower fluxes (unless its density changes drastically). On the other hand, the 6.7 keV line might be due to a recombination cascade of hydrogen- or helium-like iron ions in an optically thin, highly ionized plasma. We discuss the results in the context of proposed accretion models.

  19. Brain blood vessel segmentation using line-shaped profiles.

    PubMed

    Babin, Danilo; Pižurica, Aleksandra; De Vylder, Jonas; Vansteenkiste, Ewout; Philips, Wilfried

    2013-11-21

    Segmentation of cerebral blood vessels is of great importance in diagnostic and clinical applications, especially for embolization of cerebral aneurysms and arteriovenous malformations (AVMs). In order to perform embolization of the AVM, the structural and geometric information of blood vessels from 3D images is of utmost importance. For this reason, the in-depth segmentation of cerebral blood vessels is usually done as a fusion of different segmentation techniques, often requiring extensive user interaction. In this paper we introduce the idea of line-shaped profiling with an application to brain blood vessel and AVM segmentation, efficient both in terms of resolving details and in terms of computation time. Our method takes into account both local proximate and wider neighbourhood of the processed pixel, which makes it efficient for segmenting large blood vessel tree structures, as well as fine structures of the AVMs. Another advantage of our method is that it requires selection of only one parameter to perform segmentation, yielding very little user interaction.

  20. Brain blood vessel segmentation using line-shaped profiles

    NASA Astrophysics Data System (ADS)

    Babin, Danilo; Pižurica, Aleksandra; De Vylder, Jonas; Vansteenkiste, Ewout; Philips, Wilfried

    2013-11-01

    Segmentation of cerebral blood vessels is of great importance in diagnostic and clinical applications, especially for embolization of cerebral aneurysms and arteriovenous malformations (AVMs). In order to perform embolization of the AVM, the structural and geometric information of blood vessels from 3D images is of utmost importance. For this reason, the in-depth segmentation of cerebral blood vessels is usually done as a fusion of different segmentation techniques, often requiring extensive user interaction. In this paper we introduce the idea of line-shaped profiling with an application to brain blood vessel and AVM segmentation, efficient both in terms of resolving details and in terms of computation time. Our method takes into account both local proximate and wider neighbourhood of the processed pixel, which makes it efficient for segmenting large blood vessel tree structures, as well as fine structures of the AVMs. Another advantage of our method is that it requires selection of only one parameter to perform segmentation, yielding very little user interaction.

  1. TRIM32 promotes retinoic acid receptor {alpha}-mediated differentiation in human promyelogenous leukemic cell line HL60

    SciTech Connect

    Sato, Tomonobu; Okumura, Fumihiko; Iguchi, Akihiro; Ariga, Tadashi; Hatakeyama, Shigetsugu

    2012-01-06

    Highlights: Black-Right-Pointing-Pointer TRIM32 enhanced RAR{alpha}-mediated transcriptional activity even in the absence of RA. Black-Right-Pointing-Pointer TRIM32 stabilized RAR{alpha} in the human promyelogenous leukemic cell line HL60. Black-Right-Pointing-Pointer Overexpression of TRIM32 in HL60 cells induced granulocytic differentiation. Black-Right-Pointing-Pointer TRIM32 may function as a coactivator for RAR{alpha}-mediated transcription in APL cells. -- Abstract: Ubiquitination, one of the posttranslational modifications, appears to be involved in the transcriptional activity of nuclear receptors including retinoic acid receptor {alpha} (RAR{alpha}). We previously reported that an E3 ubiquitin ligase, TRIM32, interacts with several important proteins including RAR{alpha} and enhances transcriptional activity of RAR{alpha} in mouse neuroblastoma cells and embryonal carcinoma cells. Retinoic acid (RA), which acts as a ligand to nuclear receptors including RAR{alpha}, plays crucial roles in development, differentiation, cell cycles and apoptosis. In this study, we found that TRIM32 enhances RAR{alpha}-mediated transcriptional activity even in the absence of RA and stabilizes RAR{alpha} in the human promyelogenous leukemic cell line HL60. Moreover, we found that overexpression of TRIM32 in HL60 cells suppresses cellular proliferation and induces granulocytic differentiation even in the absence of RA. These findings suggest that TRIM32 functions as one of the coactivators for RAR{alpha}-mediated transcription in acute promyelogenous leukemia (APL) cells, and thus TRIM32 may become a potentially therapeutic target for APL.

  2. Non-LTE profiles of the Al I autoionization lines. [for solar model atmospheres

    NASA Technical Reports Server (NTRS)

    Finn, G. D.; Jefferies, J. T.

    1974-01-01

    A non-LTE formulation is given for the transfer of radiation in the autoionizing lines of neutral aluminum at 1932 and 1936 A through both the Bilderberg and Harvard-Smithsonian model atmospheres. Numerical solutions for the common source function of these lines and their theoretical line profiles are calculated and compared with the corresponding LTE profiles. The results show that the non-LTE profiles provide a better match with the observations. They also indicate that the continuous opacity of the standard solar models should be increased in this wavelength region if the center-limb variations of observed and theoretical profiles of these lines are to be in reasonable agreement.

  3. DA white dwarf effective temperatures determined from IUE Lyman-alpha profiles

    NASA Technical Reports Server (NTRS)

    Holberg, J. B.; Basile, J.; Wesemael, F.

    1986-01-01

    The Lyman-alpha profiles of 12 DA white dwarfs have been obtained with the International Ultraviolet Explorer Satellite. Analysis of these profiles provides an improved, uniform, and relatively bias-free measure of effective temperature for these stars over the range 20,000-60,000 K. Simultaneous estimates of surface gravity yield a mean gravity of log g = 7.96 for the entire sample, with the hottest stars tending to have the lowest gravities. A significant exception to this trend occurs in the case of the gravitation of HZ 43. An important by-product of this work has been the determination of a correction to IUE fluxes over the 1150-1350 A range.

  4. Theoretical profiles of Lyman-alpha satellites and application to synthetic spectra of DA white dwarfs

    NASA Technical Reports Server (NTRS)

    Allard, N. F.; Koester, D.

    1992-01-01

    We present new theoretical calculations for the red wing of the Lyman-alpha profile. Close collisions with neutral and ionized hydrogen lead to the formation of the pseudomolecules H-H and H-H(+) with the appearance of satellite features near 1600 and 1400 A. The calculations include multiperturber effects, which are responsible for the formation of H3 and H3 with features near 1950 and 2600 A. The theoretical absorption profiles are included in stellar atmosphere codes and used to predict synthetic spectra for DA white dwarfs of intermediate temperatures (20,000 to 8000 K). These new calculations offer a unique opportunity to determine accurate effective temperatures and surface gravities for the variable ZZ Ceti stars.

  5. Growth characteristics and cytokine/chemokine induction profiles of dengue viruses in various cell lines.

    PubMed

    Yohan, B; Kendarsari, R Indah; Mutia, K; Bowolaksono, A; Harahap, A R; Sasmono, R Tedjo

    2014-01-01

    The dengue disease varies clinically from mild fever to hemorrhagic fever up to potentially fatal shock syndrome. Such differences in manifestation of dengue virus (DENV) infection have been ascribed to intrinsic differences in DENVs. Four DENV serotypes or four dengue viruses (DENV-1 to DENV-4) have been clearly distinguished; however, only limited information is available on their biological characteristics in vitro. To shed more light on this subject, replication kinetics of all four DENVs in various cell lines and induction of 26 cytokines/chemokines were investigated. The results showed that, (i) all DENVs replicated relatively similarly in various cell lines, (ii) DENV-1 was most effective in this regard, (iii) A549 cells showed the highest virus replication rate compared to other cells, and (iv) all DENVs induced in A549 cells similar levels of several cytokines/chemokines, namely eotaxin, granulocyte colony stimulating factor (G-CSF), interferon alpha 2 (IFN-α2), interleukins 6, 8 15 (IL-6, IL-8, IL-15), and IP-10. In conclusion, this study revealed a similarity in growth characteristics and cytokine/chemokine induction profile for all four DENV serotypes in vitro.

  6. Exploring the Galactic Damped Lyman alpha Absorber with Antipodal Sight Lines

    NASA Astrophysics Data System (ADS)

    Danforth, Charles

    2011-10-01

    Damped Lya Absorbers {DLAs} are the highest column density systems seen in the spectra of distant quasars. Some DLAs are thought to represent absorption from gas associated with an intervening galaxy disks, halo, tidal tail, etc., along the line of sight and DLAs are a key method of studying star formation, metal abundances, and kinematics at high redshift. These systems are exceedingly rare at low-z where the intervening galaxies can be studied in detail, so the precise nature of these important diagnostics remains poorly-understood. However, there is one DLA present along every extragalactic sight line which we can study in exhaustive detail: the Milky Way DLA! We propose a study of sight lines through the Galactic DLA using archival far-UV spectra from STIS, COS, and GHRS. We will construct 30-40 full-DLA profiles for the Milky Way DLA by combining the absorption spectra of pairs of nearly-antipodal sight lines {within 20 degrees of antipodal}. This will allow us to sample a realistic distribution of physical conditions in a system exhibiting realistic kinematics. Our DLA profiles will intersect the Galaxy at a range of angles and probe a variety of Galactic structures - high-velocity clouds, tidal tails, possible outflows, etc. - the same features which are inferred but rarely confirmed in some external DLAs. This diversity of sight lines through the same galaxy will let us determine if the wide range of observed properties in external DLAs {column density, velocity dispersion, abundances, etc.} could be an effect of the precise details of the line of sight or is inherent to the population of DLA hosts.

  7. Observations of Ha Line Profiles in Be Stars Using 45 cm Cassegrain Telescope at Arthur C Clarke Institute

    NASA Astrophysics Data System (ADS)

    Gunasekera, S.; Adassuriya, J.; Medagangoda, N. I.

    2008-12-01

    H-alpha line profiles of 13 Be starts (mv d6.9) were observed using 45 cm Cassegrain telescope at the Arthur C Clarke Institute, Sri Lanka during the period of August 2005 to March 2006. High resolution spectra of these Be stars were obtained using 1200 lines/mm reflective grating in first order with resolution R=λ/Δλ=76800 and linear spectral dispersion 0.31 Å per pixel at 6563 Å in order to find out line parameters such as equivalent width, full width at half-maxima, V/R ratios etc. A study of the correlations between different pairs of parameters was obtained and compared with previous analysis to see the behavior of circumstellar disk. We found a good correlation (0.8) between FWHM and v sin i and strong correlation (0.96) between the Ip/Ic and the equivalent width. The drastic changes of the V/R ratio in profiles HR5941 and HR6712 imply the circumstellar disk is more likely an elliptical shape and undergoes slow apsidal motion. The inclination angles (i) were estimated for each star using the theoretical vsin i values and assuming star rotates in 0.8Vc and are matched with the structure of the line profiles.

  8. Alpha1-antichymotrypsin induces TNF-alpha production and NF-kappaB activation in the murine N9 microglial cell line.

    PubMed

    Braghin, Elisa; Galimberti, Daniela; Scarpini, Elio; Bresolin, Nereo; Baron, Pierluigi

    2009-12-18

    Microglia are known to accumulate in senile plaques of Alzheimer's disease (AD) together with a set of proteins including alpha(1)-antichymotrypsin (ACT). To investigate the biological effects of the interaction between ACT and microglia, we examined cytokine production by the murine N9 microglial cell line after ACT treatment. Real-time PCR analysis and specific immunoassays demonstrate that ACT triggers mRNA expression and release of TNF-alpha by N9 microglial cells. Furthermore, we show that ACT induces a significant increase in NF-kappaB nuclear translocation. Taken together, these data demonstrate that ACT might contribute to the inflammatory mechanisms present in AD senile plaques.

  9. DNA methylation profiles in the human genes for tumor necrosis factors. alpha. and. beta. in subpopulations of leukocytes and in leukemias

    SciTech Connect

    Kochanek, S.; Radbruch, A.; Tesch, H.; Renz, D.; Doerfler, W. )

    1991-07-01

    The genomic sequencing technique has been applied to assess the state of methylation in the DNA from human leukocyte subpopulations from healthy individuals and in the DNA from several individuals with myeloid or lymphatic leukemias or non-Hodgkin lymphomas. Leukocyte populations were purified by the high-gradient magnetic cell sorting technique. In the human tumor necrosis factor {alpha} (TNF-{alpha}) gene segment between nucleotides 300 and 1150, the specific methylation profile in the DNA from human granulocytes and monocytes is maintained in three cases of myeloid leukemia. In the TNF-{beta} gene, DNA methylation is decreased in several examples of acute or chronic myeloid leukemias in comparison to normal human granulocytes or monocytes, whose DNA is almost completely methylated between nucleotides 700 and 900. In human T and B lymphocytes, the main producers of TNF-{beta}, in three instances of chronic lymphatic leukemias and two cases of non-Hodgkin lymphomas, all 5{prime}-CG-3{prime} sequences are unmethylated in this region. The DNA from the human HeLa cell line is highly methylated at all 5{prime}-CG-3{prime} sequences in the TNF-{alpha} and -{beta} genes. The TNF-{alpha} gene is transcribed in the cells of one case of acute myeloid leukemia in which the analyzed region of the TNF-{alpha} gene is completely unmethylated. The TNF-{beta} gene is not transcribed in any of the malignant cells tested.

  10. Estimation of the solar Lyman alpha flux from ground based measurements of the Ca II K line

    NASA Technical Reports Server (NTRS)

    Rottman, G. J.; Livingston, W. C.; White, O. R.

    1990-01-01

    Measurements of the solar Lyman alpha and Ca II K from October 1981 to April 1989 show a strong correlation (r = 0.95) that allows estimation of the Lyman alpha flux at 1 AU from 1975 to December 1989. The estimated Lyman alpha strength of 3.9 x 10 to the 11th + or - 0.15 x 10 to the 11th photons/s sq cm on December 7, 1989 is at the same maximum levels seen in Cycle 21. Relative to other UV surrogates (sunspot number, 10.7 cm radio flux, and He I 10830 line strength), Lyman alpha estimates computed from the K line track the SME measurements well from solar maximum, through solar minimum, and into Cycle 22.

  11. Effects of alpha-tocopherol on oxidative status and metabolic profile in overweight women.

    PubMed

    Ble-Castillo, J L; Cleva-Villanueva, G; Díaz-Zagoya, J C; Medina-Santillán, R; Rubio-Arias, H O; Méndez, J D

    2007-12-01

    Despite extensive research, the effects of alpha-tocopherol supplementation remain controversial. Few studies have been focused on obese and overweight people. We examined the effects of alpha-tocopherol (AT) on the oxidative status and metabolic profile in overweight women. Sixteen overweight women between the ages of 40-60 years old, received AT, 800 IU/day during 12 weeks, followed by a 6-week washout period. Blood samples were taken at the beginning and then every 6 weeks until the end of the study. AT, retinol, malondialdehyde (MDA), total antioxidant status (TAS), selenium-dependent glutathione peroxidase (GPx) and CuZn-superoxide dismutase (SOD) were quantified to evaluate the oxidative stress. The metabolic profile was estimated by measuring glycated hemoglobin (HbA1c) in erythrocytes and glucose, phosphate, magnesium, lipid and lipoprotein concentrations in serum. Under AT administration HbA1c, serum- MDA levels and erythrocyte GPx activity were markedly reduced. TAS, AT and Mg2+ concentrations in serum and SOD activity in erythrocytes were higher after AT treatment. Body weight; glucose, lipid and retinol concentrations, or blood cells count were unchanged. Lipid peroxidation was considerably reduced in AT treated women and also improved serum antioxidant status was observed, but the imbalanced response between erythrocyte SOD and GPx activities could affect normal response to oxidative stress.

  12. Overexpression of estrogen receptor-alpha in the endometrial carcinoma cell line Ishikawa: inhibition of growth and angiogenic factors.

    PubMed

    Ali, Syed Hamid; O'Donnell, Amy L; Mohamed, Seema; Mousa, Shaker; Dandona, Paresh

    2004-12-01

    A high level of estrogen receptor-alpha (ER-alpha) is believed to be favorable in the prognosis and treatment of endometrial, ovarian, and breast cancer. High levels of ER-alpha have been shown to inhibit the growth and invasive, metastatic potential of breast cancer cell lines. To bring about these inhibitory effects, ER-alpha probably acts through other cellular factors involved in the regulation of cell growth. To investigate the role of high levels ER-alpha in growth inhibition of endometrial cancer cells. A human ER-alpha cDNA was stably overexpressed in an endometrial cancer cell line, namely, Ishikawa. ER-alpha-overexpressing, parent, and control Ishikawa cells were grown in vitro and their growth rates were compared by cell count. ER-alpha-overexpressing and parent Ishikawa cells were also grown in vitro as tumors in a chicken chorioallantoic membrane (CAM) model, and tumor growth and angiogenesis was measured. Finally, levels of angiogenesis-modulating factors, nitric oxide synthase (NOS), and vascular endothelial growth factor (VEGF) were examined in relation to ER overexpression. The growth of Ishikawa cells was found inhibited in culture as well as in the CAM model. Angiogenesis of CAM tumors was also found inhibited in ER-overexpressing cells. Angiogenic factor VEGF was inhibited whereas the activity of NOS was found elevated following ER overexpression. Our work on the Ishikawa cell line indicates that high levels of ER-alpha in endometrial cancer may inhibit cancer growth by modulating angiogenic factors, thereby limiting the blood supply to the growing tumor. Our results support the earlier data from other groups that have shown a positive correlation between high ER content and better prognosis of endometrial cancers.

  13. Comparing the H-alpha Intensity and Radio Wave Scattering on Eight Low-Latitude Lines of Sight

    NASA Astrophysics Data System (ADS)

    Simonetti, J. H.; Dennison, B.; Topasna, G. A.

    1995-12-01

    Spangler and Reynolds compared H-alpha intensities, measured using the Wisconsin Fabry-Perot interferometer, with radio-wave scattering sizes of eight extragalactic sources along low-latitiude lines of sight. They find that some correlation exists between scattering and H-alpha intensity, as one might expect. However, the H-alpha observations were made with a 50(') beam size; higher resolution observations might provide a more accurate measure of the intensity along the scattering line of sight. We made sensitive, arcminute resolution H-alpha images of the same fields to upgrade the accuracy of their results. We find that many of their measured H-alpha intensities are accurate, but some of the higher intensities are biased upward by the presence of clumped emission. Appropriate reduction of these large intensities increases the degree of correlation between scattering and H-alpha intensity, thus strengthening their original conclusions. This work is a first step towards using our spectral-line imaging system for a more extensive study of the relationship between the warm ionized medium and scattering of radio waves. This research was supported by NSF grant AST-9319670 and a grant from the Horton Foundation to Virginia Tech.

  14. A catalog of early-type emission-line stars and Hα line profiles from LAMOST DR2

    NASA Astrophysics Data System (ADS)

    Hou, Wen; Luo, A.-Li; Hu, Jing-Yao; Yang, Hai-Feng; Du, Chang-De; Liu, Chao; Lee, Chien-De; Lin, Chien-Cheng; Wang, Yue-Fei; Zhang, Yong; Cao, Zi-Huang; Hou, Yong-Hui

    2016-09-01

    We present a catalog including 11 204 spectra of 10 436 early-type emission-line stars from LAMOST DR2, among which 9752 early-type emission-line spectra are newly discovered. For these early-type emission-line stars, we discuss the morphological and physical properties of their low-resolution spectra. In this spectral sample, the Hα emission profiles display a wide variety of shapes. Based on the Hα line profiles, these spectra are categorized into five distinct classes: single-peak emission, single-peak emission in absorption, double-peak emission, double-peak emission in absorption, and P-Cygni profiles. To better understand what causes the Hα line profiles, we divide these objects into four types from the perspective of physical classification, which include classical Be stars, Herbig Ae/Be stars, close binaries and spectra contaminated by HΠ regions. The majority of Herbig Ae/Be stars and classical Be stars are identified and separated using a (H-K, K-W1) color-color diagram. We also discuss 31 binary systems that are listed in the SIMBAD on-line catalog and identify 3600 spectra contaminated by HΠ regions after cross-matching with positions in the Dubout-Crillon catalog. A statistical analysis of line profiles versus classifications is then conducted in order to understand the distribution of Hα profiles for each type in our sample. Finally, we also provide a table of 172 spectra with Fe Π emission lines and roughly calculate stellar wind velocities for seven spectra with P-Cygni profiles.

  15. Identification of cDNA encoding an additional. alpha. subunit of a human GTP-binding protein: Expression of three. alpha. sub i subtypes in human tissues and cell lines

    SciTech Connect

    Kim, S.; Ang, S.L.; Bloch, D.B.; Bloch, K.D.; Kawahara, Y.; Tolman, C.; Lee, R.; Seidman, J.G.; Neer, E.J. )

    1988-06-01

    The guanine nucleotide-binding proteins (G proteins), which mediate hormonal regulation of many membrane functions, are composed of {alpha}, {beta}, and {gamma} subunits. The authors have cloned and characterized cDNA from a human T-cell library encoding a form of {alpha}{sub i} that is different from the human {alpha}{sub i} subtypes previously reported. {alpha}{sub i} is the {alpha} subunit of a class of G proteins that inhibits adenylate cyclase and regulates other enzymes and ion channels. This cDNA encodes a polypeptide of 354 amino acids and is assigned to encode the {alpha}{sub i-3} subtype of G proteins on the basis of its similarity to other {alpha}{sub i}-like cDNAs and the presence of a predicted site for ADP ribosylation by pertussis toxin. They have determined the expression of mRNA for this and two other subtypes of human {alpha}{sub i} ({alpha}{sub i-1} and {alpha}{sub i-2}) in a variety of human fetal tissues and in human cell lines. All three {alpha}{sub i} subtypes were present in the tissues tested. However, analysis of individual cell types reveals specificity of {alpha}{sub i-1} expression. mRNA for {alpha}{i-1} is absent in T cells, B cells, and monocytes but is present in other cell lines. The finding of differential expression of {alpha}{sub i-1} genes may permit characterization of distinct physiological roles for this {alpha}{sub i} subunit. mRNA for {alpha}{sub i-2} and {alpha}{sub i-3} was found in all the primary and transformed cell lines tested. Thus, some cells contain all three {alpha}{sub i} subtypes. This observation raises the question of how cells prevent cross talk among receptors that are coupled to effectors through such similar {alpha} proteins.

  16. Effect of a progressive sound wave on the profiles of spectral lines. 2: Asymmetry of faint Fraunhofer lines. [absorption spectra

    NASA Technical Reports Server (NTRS)

    Kostyk, R. I.

    1974-01-01

    The absorption coefficient profile was calculated for lines of different chemical elements in a medium with progressive sound waves. Calculations show that (1) the degree and direction of asymmetry depend on the atomic ionization potential and the potential of lower level excitation of the individual line; (2) the degree of asymmetry of a line decreases from the center toward the limb of the solar disc; and (3) turbulent motions 'suppress' the asymmetry.

  17. alpha 2-adrenoreceptors profile modulation. 2. Biphenyline analogues as tools for selective activation of the alpha 2C-subtype.

    PubMed

    Gentili, Francesco; Ghelfi, Francesca; Giannella, Mario; Piergentili, Alessandro; Pigini, Maria; Quaglia, Wilma; Vesprini, Cristian; Crassous, Pierre-Antoine; Paris, Hervé; Carrieri, Antonio

    2004-12-02

    A series of derivatives structurally related to biphenyline (3) was designed with the aim to modulate selectivity toward the alpha(2)-AR subtypes. The results obtained demonstrated that the presence of a correctly oriented function with positive electronic effect (+sigma) in portion X of the ligands is an important factor for significant alpha(2C)-subtype selectivity (imidazolines 5, 13, 16, and 19). Homology modeling and docking studies support experimental data and highlight the crucial role for the hydrogen bond between the pyridine nitrogen in position 3 of 5 and the NH-indole ring of Trp6.48, which is favorably oriented in the alpha(2C)-subtype, only.

  18. TGF-alpha can act as morphogen and/or mitogen in a colon-cancer cell line.

    PubMed

    Liu, D; Gagliardi, G; Nasim, M M; Alison, M R; Oates, T; Lalani, E N; Stamp, G W; Pignatelli, M

    1994-02-15

    Transforming growth factor alpha (TGF-alpha) has multifunctional biological effects on a variety of mesenchymal and epithelial cells. It is a potent mitogen for a number of normal and transformed cell types, regulates extracellular matrix (ECM) production and promotes breast, kidney and lung morphogenesis. To clarify the role of ECM proteins in the morphogenetic and mitogenic effects of TGF-alpha, we have used a human colon carcinoma cell line (SW1222) which expresses EGF receptor. Here we show that TGF-alpha at 1 ng/ml increases the proliferation of SW1222 cells, but only when they are cultured on plastic rather than collagen-coated plates. Higher concentrations of TGF-alpha (10 ng/ml) did not increase cell proliferation but significantly enhanced the crypt-like glandular differentiation when cells were grown in 3-dimensional collagen gel (p = 0.027). These effects were accompanied by increased expression of alpha 2 beta 1 and alpha 3 beta 1 integrin molecules, which are receptors for extracellular matrix proteins, and by a statistically significant increase in binding of SW1222 cells to type-1 collagen. The effects of TGF-alpha both on binding to type-1 collagen and on morphological differentiation in 3-dimensional collagen gel were inhibited by monoclonal antibodies recognizing the alpha 2 beta 1 integrin. These data indicate that the morphogenetic or mitogenic activities of TGF-alpha are critically dependent on cellular interactions with extracellular matrix proteins and are primarily mediated by the alpha 2 beta 1 integrin receptor. Inappropriate expression of this growth factor, seen in tumours whose cell-matrix interactions are greatly impaired, could have deleterious effects on the maintenance of normal tissue architecture and growth control.

  19. Endovascular repair for blunt thoracic aortic injury using the Zenith Alpha low-profile device.

    PubMed

    Starnes, Benjamin W; Dwivedi, Amit J; Giglia, Joseph S; Woo, Karen; Yeh, Chyon

    2015-12-01

    The objective of this study was to report 30-day results from a prospective, nonrandomized, multicenter trial that evaluated the safety and effectiveness of the Zenith Alpha thoracic endovascular graft (Cook Medical, Bloomington, Ind) for treatment of blunt thoracic aortic injuries (BTAIs). Eligible patients with BTAIs (grade II to grade IV) in the descending thoracic aorta were treated with the Zenith Alpha device, which is available in smaller graft diameters (starting at 18 mm) and lower profile delivery systems (starting at 16F) than currently available thoracic endografts. The device (nitinol stents and polyester graft material) accommodates a tighter aortic curvature (radius of 20 mm) than the predicate Zenith TX2 Pro-Form. Follow-up clinical and imaging evaluations were performed at 30 days, at 6 and 12 months, and annually thereafter through 5 years. The primary end point was 30-day mortality. Between January 2013 and May 2014, 50 patients (44 men; mean age, 43 ± 19 years; range, 18-89 years) were treated with the Zenith Alpha device at 17 U.S. sites. The mean Injury Severity Score was 31 ± 14 (range, 3-66). Technical success was achieved in 100% of patients, with 0% intraoperative mortality. Device access was entirely percutaneous in 22 patients (44%). Smaller size grafts (18-24 mm) were used in 15 patients (30%). The mean procedure time was 85 ± 44 minutes (range, 34-278 minutes), and mean blood loss was 103 ± 145 mL (range, 0-1000 mL). The 30-day mortality rate was 2%; one patient died 24 days after the procedure of respiratory failure related to associated injuries and not to the device or procedure as adjudicated by an independent Clinical Events Committee (CEC). One patient experienced a stroke 7 days after the procedure (cause undetermined by the CEC), and one patient underwent reintervention for a site-reported proximal type I endoleak (core laboratory reported unknown endoleak type) at 30 days after the procedure. There have been no conversions

  20. Lipidomic profiling in mouse brain reveals differences between ages and genders, with smaller changes associated with alpha-synuclein genotype.

    PubMed

    Rappley, Irit; Myers, David S; Milne, Stephen B; Ivanova, Pavlina T; Lavoie, Matthew J; Brown, H Alex; Selkoe, Dennis J

    2009-10-01

    Advances in lipidomics technology have facilitated the precise detection, identification and profiling of lipid species within tissues. Mass spectrometry allows for identification of lipids as a function of the total number of carbons and double bonds in their acyl chains. Such detailed descriptions of lipid composition can provide a basis for further investigation of cell signaling and metabolic pathways, both physiological and pathological. Here, we applied phospholipid profiling to mouse models relevant to Parkinson's disease, using mice that were transgenic for human alpha-synuclein (alphaSyn) or deleted of endogenous alphaSyn. Proposed functions of alphaSyn include phospholipid binding, regulation of membrane composition, and regulation of vesicular pools. We investigated whether alphaSyn gene dosage interacts with differences in phospholipid composition across brain regions or with age-related changes in brain phospholipid composition. The most dramatic phospholipid changes were observed in alphaSyn wild-type animals as a function of age and gender. alphaSyn genotype-specific changes were also observed in aged, but not young, mice. Our results provide a detailed and systematic characterization of brain phospholipid composition in mice and identify age-related changes relevant both to Parkinson's disease and to normal aging.

  1. The blueshifted Pa alpha broad line component and the origin of strong iron emission in the ultraluminous infrared galaxy IRAS 07598+6508

    NASA Technical Reports Server (NTRS)

    Taniguchi, Yoshiaki; Kawara, Kimiaki; Murayama, Takashi; Sato, Yasunori

    1994-01-01

    We present the Pa alpha emission profile of the ultraluminous infrared galaxy (ULFIRG) IRAS 07598+6508 which is an unusually strong Fe II emitter in the optical. The Pa alpha emission line profile shows a blueshifted broad component (FWHM approximately equal to 3900 km/sec) together with a narrow core (FWHM less than or equal to 530 km/sec). The presence of the broad line component strongly suggests that IRAS 07598+6508 has an active galactic nucleus, supporting a scenario of merger-induced quasar formation proposed by Sanders et al. (1988), although we cannot rule out the possibility of a supernova-driven high speed wind. Possible detection of (Fe II) 1.893 micrometer emission is also reported. It is shown that strong Fe II emitters such as IRAS 07598+6508 have intermediate IRAS color properties between normal quasars and cold ultraluminous infrared galaxies. We thus suggest an evolutionary link from cold ULFIRG through warm ULFIRG and Fe II ULFIRG to quasars.

  2. Analysis of magnesium XI line profiles from solar active regions

    NASA Technical Reports Server (NTRS)

    Blake, R. L.; Cowan, R. D.; Felthauser, H.; Fenimore, E. E.; Hockaday, M. P.; Bely-Dubau, F.; Faucher, P.; Steenman-Clark, L.

    1984-01-01

    High-resolution solar spectra of the Mg XI 1s2 1S0-1s2p 1P1 resonance line at 9.169 A and the associated nearby satellite lines obtained from two rocket-borne crystal spectrometer measurements are presented. Comparisons with two independent sets of theoretical calculations for the 1s2nl-1s2pnl dielectronic satellite lines with n = 3-7 indicate electron temperatures of 4-4.5 million K. Measured line widths indicate either that the ion temperature exceeds the electron temperature by about a million K or that about 28 km/s of turbulence is present.

  3. Modulation of proteomic profile in H295R adrenocortical cell line induced by mitotane.

    PubMed

    Stigliano, A; Cerquetti, L; Borro, M; Gentile, G; Bucci, B; Misiti, S; Piergrossi, P; Brunetti, E; Simmaco, M; Toscano, V

    2008-03-01

    Mitotane, 1,1-dichloro-2-(o-chlorophenyl)-2-(p-chloro-phenyl) ethane (o,p'-DDD), is a compound that represents the effective agent in the treatment of the adrenocortical carcinoma (ACC), able to block cortisol synthesis. In this type of cancer, the biological mechanism induced by this treatment remains still unknown. In this study, we have already shown a greater impairment in the first steps of the steroidogenesis and recognized a little effect on cell cycle. We also evaluated the variation of proteomic profile of the H295R ACC cell line, either in total cell extract or in mitochondria-enriched fraction after treatment with mitotane. In total cell extracts, triose phosphate isomerase, alpha-enolase, D-3-phosphoglycerate dehydrogenase, peroxiredoxin II and VI, heat shock protein 27, prohibitin, histidine triad nucleotide-binding protein, and profilin-1 showed a different expression. In the mitochondrial fraction, the following proteins appeared to be down regulated: aldolase A, peroxiredoxin I, heterogenous nuclear ribonucleoprotein A2/B1, tubulin-beta isoform II, heat shock cognate 71 kDa protein, and nucleotide diphosphate kinase, whereas adrenodoxin reductase, cathepsin D, and heat shock 70 kDa protein 1A were positively up-regulated. This study represents the first proteomic study on the mitotane effects on ACC. It permits to identify some protein classes affected by the drug involved in energetic metabolism, stress response, cytoskeleton structure, and tumorigenesis.

  4. Use of molecular markers aids in the development of diverse inbred backcross lines in Beit Alpha cucumber (Cucumis sativus L.)

    USDA-ARS?s Scientific Manuscript database

    Beit Alpha cucumber (Cucumis sativus L.) is a Mediterranean fresh-market type with a relatively narrow genetic base. To broaden its base for plant improvement, 42 diverse accessions were compared employing a previously defined standard marker array to choose wide-based parental lines for use in bac...

  5. Use of molecular markers aids in the development of diverse inbred backcross lines in beit alpha cucumber (Cucumis sativus L.)

    USDA-ARS?s Scientific Manuscript database

    Beit Alpha cucumber (Cucumis sativus L.) is a Mediterranean fresh-market type with a relatively narrow genetic base. To broaden its base for plant improvement, 42 diverse accessions were compared employing a previously defined standard marker array to choose wide-based parental lines for use in bac...

  6. Comparative gene expression profiles induced by PPAR{gamma} and PPAR{alpha}/{gamma} agonists in rat hepatocytes

    SciTech Connect

    Rogue, Alexandra; Renaud, Marie Pierre; Claude, Nancy; Guillouzo, Andre; Spire, Catherine

    2011-07-01

    Species-differential toxic effects have been described with PPAR{alpha} and PPAR{gamma} agonists between rodent and human liver. PPAR{alpha} agonists (fibrates) are potent hypocholesterolemic agents in humans while they induce peroxisome proliferation and tumors in rodent liver. By contrast, PPAR{gamma} agonists (glitazones) and even dual PPAR{alpha}/{gamma} agonists (glitazars) have caused idiosyncratic hepatic and nonhepatic toxicities in human without evidence of any damage in rodent during preclinical studies. The mechanisms involved in such differences remain largely unknown. Several studies have identified the major target genes of PPAR{alpha} agonists in rodent liver while no comprehensive analysis has been performed on gene expression changes induced by PPAR{gamma} and dual PPAR{alpha}/{gamma} agonists. Here, we investigated transcriptomes of rat hepatocytes after 24 h treatment with two PPAR{gamma} (troglitazone and rosiglitazone) and two PPAR{alpha}/{gamma} (muraglitazar and tesaglitazar) agonists. Although, hierarchical clustering revealed a gene expression profile characteristic of each PPAR agonist class, only a limited number of genes was specifically deregulated by glitazars. Functional analyses showed that many genes known as PPAR{alpha} targets were also modulated by both PPAR{gamma} and PPAR{alpha}/{gamma} agonists and quantitative differences in gene expression profiles were observed between these two classes. Moreover, most major genes modulated in rat hepatocytes were also found to be deregulated in rat liver after tesaglitazar treatment. Taken altogether, these results support the conclusion that differential toxic effects of PPAR{alpha} and PPAR{gamma} agonists in rodent liver do not result from transcriptional deregulation of major PPAR target genes but rather from qualitative and/or quantitative differential responses of a small subset of genes.

  7. Estimation of Mass-Loss Rates from Emission Line Profiles in the UV Spectra of Cool Stars

    NASA Technical Reports Server (NTRS)

    Carpenter, K. G.; Robinson, R. D.; Harper, G. M.

    1999-01-01

    The photon-scattering winds of cool, low-gravity stars (K-M giants and supergiants) produce absorption features in the strong chromospheric emission lines. This provides us with an opportunity to assess important parameters of the wind, including flow and turbulent velocities, the optical depth of the wind above the region of photon creation, and the star's mass-loss rate. We have used the Lamers et al. Sobolev with Exact Integration (SEI) radiative transfer code along with simple models of the outer atmospheric structure to compute synthetic line profiles for comparison with the observed line profiles. The SEI code has the advantage of being computationally fast and allows a great number of possible wind models to be examined. We therefore use it here to obtain initial first-order estimates of the wind parameters. More sophisticated, but more time-consuming and resource intensive calculations will be performed at a later date, using the SEI-deduced wind parameters as a starting point. A comparison of the profiles over a range of wind velocity laws, turbulence values, and line opacities allows us to constrain the wind parameters, and to estimate the mass-loss rates. We have applied this analysis technique (using lines of Mg II, 0 I, and Fe II) so far to four stars: the normal K5-giant alpha Tau, the hybrid K-giant gamma Dra, the K5 supergiant lambda Vel, and the M-giant gamma Cru. We present in this paper a description of the technique, including the assumptions which go into its use, an assessment of its robustness, and the results of our analysis.

  8. Estimation of Mass-Loss Rates from Emission Line Profiles in the UV Spectra of Cool Stars

    NASA Technical Reports Server (NTRS)

    Carpenter, K. G.; Robinson, R. D.; Harper, G. M.

    1999-01-01

    The photon-scattering winds of cool, low-gravity stars (K-M giants and supergiants) produce absorption features in the strong chromospheric emission lines. This provides us with an opportunity to assess important parameters of the wind, including flow and turbulent velocities, the optical depth of the wind above the region of photon creation, and the star's mass-loss rate. We have used the Lamers et al. Sobolev with Exact Integration (SEI) radiative transfer code along with simple models of the outer atmospheric structure to compute synthetic line profiles for comparison with the observed line profiles. The SEI code has the advantage of being computationally fast and allows a great number of possible wind models to be examined. We therefore use it here to obtain initial first-order estimates of the wind parameters. More sophisticated, but more time-consuming and resource intensive calculations will be performed at a later date, using the SEI-deduced wind parameters as a starting point. A comparison of the profiles over a range of wind velocity laws, turbulence values, and line opacities allows us to constrain the wind parameters, and to estimate the mass-loss rates. We have applied this analysis technique (using lines of Mg II, 0 I, and Fe II) so far to four stars: the normal K5-giant alpha Tau, the hybrid K-giant gamma Dra, the K5 supergiant lambda Vel, and the M-giant gamma Cru. We present in this paper a description of the technique, including the assumptions which go into its use, an assessment of its robustness, and the results of our analysis.

  9. Lipidomic profile of GM95 cell death induced by Clostridium perfringens alpha-toxin.

    PubMed

    Manni, Marco M; Valero, Juan G; Pérez-Cormenzana, Miriam; Cano, Ainara; Alonso, Cristina; Goñi, Félix M

    2017-03-01

    Clostridium perfringens alpha-toxin (ATX) is considered as a prototype of cytotoxic bacterial phospholipases C, and is the major virulence factor in C. perfringens-induced gas gangrene. It is known that, depending on the dose, ATX causes membrane disruption and cytolysis or only limited hydrolysis of its substrates. In the latter case, toxin activity leads to the unregulated generation of bioactive lipids that can ultimately induce cell death. We have characterized apoptosis and necrosis in highly ATX-sensitive, ganglioside-deficient cells exposed to different concentrations of ATX and we have studied the lipidomic profile of cells treated with ATX as compared to native cells to detect the main changes in the lipidomic profile and the possible involvement of lipid signals in cell death. ATX causes both apoptosis and necrosis, depending on dose and time. ATX activates cell death, stimulating the release of cytochrome C from mitochondria and the consequent activation of caspases-3. Moreover GM95 cells treated with ATX showed important lipidomic alterations, among them we detected a general decrease in several phospholipid species and important changes in lipids involved in programmed cell death e.g. ceramide. The data suggest two different mechanisms of cell death caused by ATX, one leading to (mainly saturated) glycerophospholipid hydrolysis related to an increase in diacylglycerols and associated to membrane damage and necrosis, and a second mechanism involving chiefly sphingomyelin hydrolysis and generation of proapoptotic lipidic mediators such as ceramide, N-acylethanolamine and saturated non-esterified fatty acids.

  10. Theoretical effect of various broadening parameters on ultraviolet line profiles

    NASA Technical Reports Server (NTRS)

    Peytremann, E.

    1972-01-01

    The relative importance of various damping parameters in ultraviolet lines under conditions of normal stellar atmospheres are studied. It is found that the damping by electron collisions is always much smaller than either the radiative or the classical damping, except for lines that arise from high excitation levels and do not therefore develop strong damping wings. A damping constant equal to 10 times the classical value is always much too large when compared to the more realistic (electron + radiative) damping.

  11. Reaching Higher Densities for Laboratory White Dwarf Photospheres to Measure Spectroscopic Line Profiles

    NASA Astrophysics Data System (ADS)

    Falcon, R. E.; Bailey, J. E.; Gomez, T. A.; Schaeuble, M.; Nagayama, T.; Montgomery, M. H.; Winget, D. E.; Rochau, G. A.

    2017-03-01

    As part of our laboratory investigation of the theoretical line profiles used in white dwarf atmosphere models, we extend the electron-density (ne) range measured by our experiments to higher densities (up to ne ˜80×1016 cm-3). Whereas inferred parameters using the hydrogen-β spectral line agree among different line-shape models for ne≲ 30×1016 cm–3, we now see divergence between models. These are densities beyond the range previously benchmarked in the laboratory, meaning theoretical profiles in this regime have not been fully validated. Experimentally exploring these higher densities enables us to test and constrain different line-profile models, as the differences in their relative H-Balmer line shapes are more pronounced at such conditions. These experiments also aid in our study of occupation probabilities because we can measure these from relative line strengths.

  12. Transcriptomic profiling of 39 commonly-used neuroblastoma cell lines.

    PubMed

    Harenza, Jo Lynne; Diamond, Maura A; Adams, Rebecca N; Song, Michael M; Davidson, Heather L; Hart, Lori S; Dent, Maiah H; Fortina, Paolo; Reynolds, C Patrick; Maris, John M

    2017-03-28

    Neuroblastoma cell lines are an important and cost-effective model used to study oncogenic drivers of the disease. While many of these cell lines have been previously characterized with SNP, methylation, and/or mRNA expression microarrays, there has not been an effort to comprehensively sequence these cell lines. Here, we present raw whole transcriptome data generated by RNA sequencing of 39 commonly-used neuroblastoma cell lines. These data can be used to perform differential expression analysis based on a genetic aberration or phenotype in neuroblastoma (e.g., MYCN amplification status, ALK mutation status, chromosome arm 1p, 11q and/or 17q status, sensitivity to pharmacologic perturbation). Additionally, we designed this experiment to enable structural variant and/or long-noncoding RNA analysis across these cell lines. Finally, as more DNase/ATAC and histone/transcription factor ChIP sequencing is performed in these cell lines, our RNA-Seq data will be an important complement to inform transcriptional targets as well as regulatory (enhancer or repressor) elements in neuroblastoma.

  13. Transcriptomic profiling of 39 commonly-used neuroblastoma cell lines

    PubMed Central

    Harenza, Jo Lynne; Diamond, Maura A.; Adams, Rebecca N.; Song, Michael M.; Davidson, Heather L.; Hart, Lori S.; Dent, Maiah H.; Fortina, Paolo; Reynolds, C. Patrick; Maris, John M.

    2017-01-01

    Neuroblastoma cell lines are an important and cost-effective model used to study oncogenic drivers of the disease. While many of these cell lines have been previously characterized with SNP, methylation, and/or mRNA expression microarrays, there has not been an effort to comprehensively sequence these cell lines. Here, we present raw whole transcriptome data generated by RNA sequencing of 39 commonly-used neuroblastoma cell lines. These data can be used to perform differential expression analysis based on a genetic aberration or phenotype in neuroblastoma (e.g., MYCN amplification status, ALK mutation status, chromosome arm 1p, 11q and/or 17q status, sensitivity to pharmacologic perturbation). Additionally, we designed this experiment to enable structural variant and/or long-noncoding RNA analysis across these cell lines. Finally, as more DNase/ATAC and histone/transcription factor ChIP sequencing is performed in these cell lines, our RNA-Seq data will be an important complement to inform transcriptional targets as well as regulatory (enhancer or repressor) elements in neuroblastoma. PMID:28350380

  14. The alpha Centauri Line of Sight: D/H Ratio, Physical Properties of Local Interstellar Gas, and Measurement of Heated Hydrogen (The 'Hydrogen Wall') Near the Heliopause

    NASA Technical Reports Server (NTRS)

    Linsky, Jeffrey L.; Wood, Brian E.

    1996-01-01

    We analyze high-resolution spectra of the nearby (1.34 pc) stars alpha Cen A (G2 V) and alpha Cen B (K1 V), which were obtained with the Goddard High Resolution Spectrograph on the Hubble Space Telescope. The observations consist of echelle spectra of the Mg II 2800 A and Fe II 2599 A resonance lines and the Lyman-alpha lines of hydrogen and deuterium. The interstellar gas has a velocity (v = - 18.0 +/- 0.2 km/s) consistent with the local flow vector proposed for this line of sight by Lailement & Berlin (1992). The temperature and nonthermal velocity inferred from the Fe II, Mg II, and D I line profiles are T = 5400 +/- 500 K and xi = 1.20 +/- 0.25 km/s, respectively. However, single-component fits to the H I Lyman-alpha lines yield a Doppler parameter (b(sub HI) = 11.80 km/s) that implies a significantly warmer temperature of 8350 K, and the velocity of the H I absorption (v = - 15.8 +/- 0.2 km/s) is redshifted by about 2.2 km/s with respect to the Fe II, Mg II, and D I lines. The one-component model of the interstellar gas suggests natural logarithm N base HI = 18.03 +/- 0.01 and D/H = (5.7 +/- 0.2) x 10(exp -6) . These parameters lead to a good fit to the observed spectra, but this model does not explain the higher temperature and redshift of H I relative to the other interstellar lines. The most sensible way to resolve the discrepancy between H(I) and the other lines is to add a second absorption component to the H(I) lines. This second component is hotter (T approx. equals 30,000 K), is redshifted relative to the primary component by 2-4 km/s, and has a column density too low to be detected in the Fe(II), Mg(II), and D(I) lines. We propose that the gas responsible for this component is located near the heliopause, consisting of the heated H I gas from the interstellar medium that is compressed by the solar wind. This so-called 'hydrogen wall' is predicted by recent multifluid gasdynamical models of the interstellar gas and solar wind interaction. Our data

  15. The alpha Centauri Line of Sight: D/H Ratio, Physical Properties of Local Interstellar Gas, and Measurement of Heated Hydrogen (The 'Hydrogen Wall') Near the Heliopause

    NASA Astrophysics Data System (ADS)

    Linsky, Jeffrey L.; Wood, Brian E.

    1996-05-01

    We analyze high-resolution spectra of the nearby (1.34 pc) stars alpha Cen A (G2 V) and alpha Cen B (K1 V), which were obtained with the Goddard High Resolution Spectrograph on the Hubble Space Telescope. The observations consist of echelle spectra of the Mg II 2800 A and Fe II 2599 A resonance lines and the Lyman-alpha lines of hydrogen and deuterium. The interstellar gas has a velocity (v = - 18.0 +/- 0.2 km/s) consistent with the local flow vector proposed for this line of sight by Lailement & Berlin (1992). The temperature and nonthermal velocity inferred from the Fe II, Mg II, and D I line profiles are T = 5400 +/- 500 K and xi = 1.20 +/- 0.25 km/s, respectively. However, single-component fits to the H I Lyman-alpha lines yield a Doppler parameter (bHI = 11.80 km/s) that implies a significantly warmer temperature of 8350 K, and the velocity of the H I absorption (v = - 15.8 +/- 0.2 km/s) is redshifted by about 2.2 km/s with respect to the Fe II, Mg II, and D I lines. The one-component model of the interstellar gas suggests natural logarithm N base HI = 18.03 +/- 0.01 and D/H = (5.7 +/- 0.2) x 10-6 . These parameters lead to a good fit to the observed spectra, but this model does not explain the higher temperature and redshift of H I relative to the other interstellar lines. The most sensible way to resolve the discrepancy between H(I) and the other lines is to add a second absorption component to the H(I) lines. This second component is hotter (T approx. equals 30,000 K), is redshifted relative to the primary component by 2-4 km/s, and has a column density too low to be detected in the Fe(II), Mg(II), and D(I) lines. We propose that the gas responsible for this component is located near the heliopause, consisting of the heated H I gas from the interstellar medium that is compressed by the solar wind. This so-called 'hydrogen wall' is predicted by recent multifluid gasdynamical models of the interstellar gas and solar wind interaction. Our data provide the

  16. Diurnal profiles of salivary cortisol and alpha-amylase change across the adult lifespan: evidence from repeated daily life assessments.

    PubMed

    Nater, Urs M; Hoppmann, Christiane A; Scott, Stacey B

    2013-12-01

    Salivary cortisol and alpha-amylase are known to have distinctive diurnal profiles. However, little is known about systematic changes in these biomarkers across the adult lifespan. In a study of 185 participants (aged 20-81 years), time-stamped salivary cortisol and alpha-amylase were collected 7 times/day over 10 days. Samples were taken upon waking, 30 min later, and then approximately every 3 h until 9 pm. Multilevel models showed that older age was associated with increased daily cortisol secretion as indicated by greater area under the curve, attenuated wake-evening slopes, and more pronounced cortisol awakening responses. Further, older age was related to greater daily alpha-amylase output and attenuated wake-evening slopes. No age differences were observed regarding the alpha-amylase awakening response. Our findings may contribute to a better understanding of age-related differences in functioning of stress-related systems. Copyright © 2013 Elsevier Ltd. All rights reserved.

  17. Measurements of neutral density profiles using a deuterium Balmer-alpha diagnostic in the C-2 FRC plasma

    SciTech Connect

    Gupta, Deepak K.; Deng, B. H.; Knapp, K.; Sun, X.; Thompson, M. C.

    2012-10-15

    In C-2 field-reversed configuration (FRC) device, low neutral density outside the FRC separatrix is required to minimize the charge exchange loss of fast particles. Titanium gettering is used in C-2 to reduce the wall recycling and keep the neutral density low in plasma edge. The measurements of neutral density radial profile are desirable to understand the plasma recycling and the effects of titanium gettering. These measurements are also needed to study the interaction of neutral beams with FRC plasma and confinement of fast ions. Diagnostic based on absolute deuterium Balmer-alpha (D-alpha) radiation measurements is developed and deployed on C-2 device to measure the radial profile of neutral density. Simultaneous measurements of electron density and temperature are done using CO{sub 2} interferometer, Thomson scattering, and triple probes diagnostics along with absolute D-alpha radiation. Abel inversion was performed to get the time dependent radial profile of the local D-alpha emission density. Neutral density profiles are obtained under different machine conditions of titanium deposition.

  18. [Alpha-1 Antitrypsin Affects U0126-Induced Cytotoxicity in Colon Cancer Cell Line (HCT116)].

    PubMed

    Ljujic, M; Mijatovic, S; Bulatovic, M Z; Mojic, M; Maksimovic-Ivanic, D; Radojkovic, D; Topic, A

    2016-01-01

    Alpha-1-antitrypsin (AAT), an acute phase protein, is the principal circulatory anti-protease. This multifunctional protein is encoded by the SERPINA1 gene. Although AAT was recognised as a potential tumour marker, its role in cancer biology remains unknown. Given that it has been demonstrated that AAT has an anti-apoptotic property against non-malignant cells, we aimed to investigate whether AAT affects apoptosis in a colon cancer cell line (HCT116). The presence of AAT in the HCT116 cell culture antagonized cytotoxicity of blockers of MEK1/2, PI3K/Akt pathways as well as NF-κB. The dominantly recovered cell viability was observed in the co-treatment with MEK1/2 inhibitor U0126. In addition, it was revealed that AAT almost completely abolished U0126-induced apoptosis through maintenance of the autophagy process. Our study revealed for the first time that the observed cyto-protection triggered by AAT was accompanied by sustained autophagy which opposed apoptosis. These results may contribute to understanding of the role of AAT in cancer development and evaluation of efficacy of cancer therapy.

  19. Pulmonary vasculature directed adenovirus increases epithelial lining fluid alpha-1 antitrypsin levels.

    PubMed

    Buggio, Maurizio; Towe, Christopher; Annan, Anand; Kaliberov, Sergey; Lu, Zhi Hong; Stephens, Calvin; Arbeit, Jeffrey M; Curiel, David T

    2016-01-01

    Gene therapy for inherited serum deficiency disorders has previously been limited by the balance between obtaining adequate expression and causing hepatic toxicity. Our group has previously described modifications of a replication deficient human adenovirus serotype 5 that increase pulmonary vasculature transgene expression. In the present study, we use a modified pulmonary targeted adenovirus to express human alpha-1 antitrypsin (A1AT) in C57BL/6 J mice. Using the targeted adenovirus, we were able to achieve similar increases in serum A1AT levels with less liver viral uptake. We also increased pulmonary epithelial lining fluid A1AT levels by more than an order of magnitude compared to that of untargeted adenovirus expressing A1AT in a mouse model. These gains are achieved along with evidence of decreased systemic inflammation and no evidence for increased inflammation within the vector-targeted end organ. In addition to comprising a step towards clinically viable gene therapy for A1AT, maximization of protein production at the site of action represents a significant technical advancement in the field of systemically delivered pulmonary targeted gene therapy. It also provides an alternative to the previous limitations of hepatic viral transduction and associated toxicities. Copyright © 2016 John Wiley & Sons, Ltd.

  20. XRAYL: a program for producing idealized powder diffraction line profiles from overlapped powder patterns

    SciTech Connect

    Hubbard, C.R.; Morosin, B.; Stewart, J.M.

    1996-09-01

    The X-ray diffraction patterns of samples of polycrystalline materials are used to identify and characterize phases. Very often the total (or composite) profile consists of a series of overlapping profiles. In many applications it is necessary to separate the component profiles from the total profile. (In this document the terms {ital profile, line}, and {ital peak} are used interchangeably to represent these features of X-ray or neutron diffraction patterns.) A computer program, XRAYL, first developed in the 1980s and subsequently enlarged and improved, allows the fitting of analytical functions to powder diffraction lines. The fitting process produces parameters of chosen profile functions, diffraction line by diffraction line. The resulting function parameters may then be used to generate ``idealized`` powder diffraction lines as counts at steps in 2{Omega}. The generated lines are effectively free of statistical noise and contributions from overlapping lines. Each separated line extends to background on both sides of the generated profile. XRAYL may, therefore, be used in X-ray powder diffraction profile analysis as a preprocessor program that is, separating peaks and feeding the ``resolved`` data to subsequent analysis programs. This self- contained document includes: (1) a description of the fitting functions coded into XRAYL, (2) an outline of the least-squares algorithm used in fitting the profile function, (3) the file formats and contents utilized by the computer code, (4) the user options and their presentation requirements for execution of the program, (5) an example of input and output for a test case, and (6) source code listings on a diskette.

  1. Recommended Isolated-Line Profile for Representing High-Resolution Spectroscoscopic Transitions

    NASA Astrophysics Data System (ADS)

    Tennyson, J.; Bernath, P. F.; Campargue, A.; Császár, A. G.; Daumont, L.; Gamache, R. R.; Hodges, J. T.; Lisak, D.; Naumenko, O. V.; Rothman, L. S.; Tran, H.; Hartmann, J.-M.; Zobov, N. F.; Buldyreva, J.; Boone, C. D.; De Vizia, M. Domenica; Gianfrani, L.; McPheat, R.; Weidmann, D.; Murray, J.; Ngo, N. H.; Polyansky, O. L.

    2014-06-01

    Recommendations of an IUPAC Task Group, formed in 2011 on "Intensities and line shapes in high-resolution spectra of water isotopologues from experiment and theory" (Project No. 2011-022-2-100), on line profiles of isolated high-resolution rotational-vibrational transitions perturbed by neutral gas-phase molecules are presented. The well-documented inadequacies of the Voigt profile, used almost universally by databases and radiative-transfer codes to represent pressure effects and Doppler broadening in isolated vibrational-rotational and pure rotational transitions of the water molecule, have resulted in the development of a variety of alternative line profile models. These models capture more of the physics of the influence of pressure on line shapes but, in general, at the price of greater complexity. The Task Group recommends that the partially-Correlated quadratic-Speed-Dependent Hard-Collision profile should be adopted as the appropriate model for high-resolution spectroscopy. For simplicity this should be called the Hartmann-Tran profile (HTP). This profile is sophisticated enough to capture the various collisional contributions to the isolated line shape, can be computed in a straightforward and rapid manner, and reduces to simpler profiles, including the Voigt profile, under certain simplifying assumptions. For further details see: J. Tennyson et al, Pure Appl. Chem., 2014, in press.

  2. Laser depth profiling of diffusion and alpha ejection profiles in Durango apatite: testing the fundamental parameters of apatite (U-Th)/He dating

    NASA Astrophysics Data System (ADS)

    van Soest, M. C.; Monteleone, B. D.; Boyce, J. W.; Hodges, K.

    2009-12-01

    Since its development (e.g. Zeitler et al., 1987, Lippolt et al., 1994, Farley et al., 1996, Wolf et al., 1996) as a viable low temperature thermochronological method (U-Th)/He dating of apatite has become a popular and widely applied low temperature thermochronometer. The method has been applied with success to a great variety of geological problems, and the fundamental parameters of the method: the bulk diffusion parameters of helium in apatite, and the calculated theoretical helium stopping distance in apatite used to correct the ages for the effects of alpha ejection appear sound. However, the development of the UV laser microprobe technique for the (U-Th)/He method (Boyce et al., 2006) allows for in-situ testing of the helium bulk diffusion parameters (Farley, 2000) and can provide a direct measurement of the alpha ejection distance in apatite. So, with the ultimate goal of further developing the in-situ (U-Th)/He dating method and micro-analytical depth profiling techniques to constrain cooling histories in natural grains, we conducted a helium depth profiling study of induced diffusion and natural alpha ejection profiles in Durango apatite. For the diffusion depth profiling, a Durango crystal was cut in slabs oriented parallel and perpendicular to the crystal c-axis. The slabs were polished and heated using different temperature and time schedules to induce predictable diffusion profiles based on the bulk helium diffusion parameters in apatite. Depth profiling of the 4He diffusion profiles was done using an ArF excimer laser. The measured diffusion depth profiles at 350°, 400°, and 450° C coincide well with the predicted bulk diffusion curves, independent of slab orientation, but the 300° C profiles consistently deviate significantly. The possible cause for this deviation is currently being investigated. Alpha ejection profiling was carried out on crystal margins from two different Durango apatite crystals, several faces from each crystal were analyzed

  3. Spectral line profiles and luminosities of astrophysical water masers

    NASA Technical Reports Server (NTRS)

    Nedoluha, Gerald E.; Watson, William D.

    1991-01-01

    The spectral line narrowing and rebroadening that occurs for astrophysical masers as a function of the emergent radiative flux is calculated for the prominent, 22 GHz masing transition of water. The increased line breadths due to hyperfine structure lead to reliable, essentially model-independent upper limits to the emergent flux that tend to be lower than other estimates for these masers. For many 22 GHz masers, including the outbursts in W49 and Orion, the observed line breadths are less than 0.9 km/s. For these, the upper limit to the emergent maser flux is 10 to the 10th K-sr when expressed in terms of the brightness temperature and the solid angle for beaming. It is concluded that the extreme brightness of the interstellar water masers is due to a high degree of beaming and not to more effective pumping.

  4. Measurement of the profile of solar He I resonance lines

    NASA Technical Reports Server (NTRS)

    Phillips, E.; Judge, D. L.; Carlson, R. W.

    1982-01-01

    The analysis of data obtained by a rocket-borne helium-filled spectrometer employing a curve-of-growth technique in 1977 and 1980 is used in an investigation of the 584-A helium resonance line from the full solar disk. Between 6.5 and 13% of the Gaussian core area was found to be missing through self-reversal. Line widths from 1980 and 1977 were 101 + or - 10 mA and 128 + or - 20 mA full width at half maximum, respectively. No consistent relationship is found between the measured widths and solar activity.

  5. An Analysis of Water Line Profiles in Star Formation Regions Observed by SWAS

    NASA Technical Reports Server (NTRS)

    Ashby, Matthew L. N.; Bergin, Edwin A.; Plume, Rene; Carpenter, John M.; Neufeld, David A.; Chin, Gordon; Erickson, Neal R.; Goldsmith, Paul F.; Harwit, Martin; Howe, J. E.

    2000-01-01

    We present spectral line profiles for the 557 GHz 1(sub 1,0) yields 1(sub 0,1) ground-state rotational transition of ortho-H2(16)O for 18 galactic star formation regions observed by SWAS. 2 Water is unambiguously detected in every source. The line profiles exhibit a wide variety of shapes, including single-peaked spectra and self-reversed profiles. We interpret these profiles using a Monte Carlo code to model the radiative transport. The observed variations in the line profiles can be explained by variations in the relative strengths of the bulk flow and small-scale turbulent motions within the clouds. Bulk flow (infall, outflow) must be present in some cloud cores, and in certain cases this bulk flow dominates the turbulent motions.

  6. Distinct profiles of alpha7 nAChR positive allosteric modulation revealed by structurally diverse chemotypes.

    PubMed

    Grønlien, Jens Halvard; Håkerud, Monika; Ween, Hilde; Thorin-Hagene, Kirsten; Briggs, Clark A; Gopalakrishnan, Murali; Malysz, John

    2007-09-01

    Selective modulation of alpha7 nicotinic acetylcholine receptors (nAChRs) is thought to regulate processes impaired in schizophrenia, Alzheimer's disease, and other dementias. One approach to target alpha7 nAChRs is by positive allosteric modulation. Structurally diverse compounds, including PNU-120596, 4-naphthalene-1-yl-3a,4,5,9b-tetrahydro-3-H-cyclopenta[c]quinoline-8-sulfonic acid amide (TQS), and 5-hydroxyindole (5-HI) have been identified as positive allosteric modulators (PAMs), but their receptor interactions and pharmacological profiles remain to be fully elucidated. In this study, we investigated interactions of these compounds at human alpha7 nAChRs, expressed in Xenopus laevis oocytes, along with genistein, a tyrosine kinase inhibitor. Genistein was found to function as a PAM. Two types of PAM profiles were observed. 5-HI and genistein predominantly affected the apparent peak current (type I) whereas PNU-120596 and TQS increased the apparent peak current and evoked a distinct weakly decaying current (type II). Concentration-responses to agonists [ACh, 3-[(3E)-3-[(2,4-dimethoxyphenyl)methylidene]-5,6-dihydro-4H-pyridin-2-yl]pyridine dihydrochloride (GTS-21), and N-[(3R)-1-azabicyclo[2.2.2]oct-3-yl]-4-chlorobenzamide hydrochloride (PNU-282987)] were potentiated by both types, although type II PAMs had greater effects. When applied after alpha7 nAChRs were desensitized, type II, but not type I, PAMs could reactivate alpha7 currents. Both types of PAMs also increased the ACh-evoked alpha7 window currents, with type II PAMs generally showing larger potentiation. None of the PAMs tested increased nicotine-evoked Ca(2+) transients in human embryonic kidney 293 cells expressing human alpha4beta2 or alpha3beta4 nAChRs, although some inhibition was noted for 5-HI, genistein, and TQS. In summary, our studies reveal two distinct alpha7 PAM profiles, which could offer unique opportunities for modulating alpha7 nAChRs in vivo and in the development of novel

  7. Comparative Proteomic Profiling of Pancreatic Ductal Adenocarcinoma Cell Lines

    PubMed Central

    Kim, Yikwon; Han, Dohyun; Min, Hophil; Jin, Jonghwa; Yi, Eugene C.; Kim, Youngsoo

    2014-01-01

    Pancreatic cancer is one of the most fatal cancers and is associated with limited diagnostic and therapeutic modalities. Currently, gemcitabine is the only effective drug and represents the preferred first-line treatment for chemotherapy. However, a high level of intrinsic or acquired resistance of pancreatic cancer to gemcitabine can contribute to the failure of gemcitabine treatment. To investigate the underlying molecular mechanisms for gemcitabine resistance in pancreatic cancer, we performed label-free quantification of protein expression in intrinsic gemcitabine-resistant and - sensitive human pancreatic adenocarcinoma cell lines using our improved proteomic strategy, combined with filter-aided sample preparation, single-shot liquid chromatography-mass spectrometry, enhanced spectral counting, and a statistical method based on a power law global error model. We identified 1931 proteins and quantified 787 differentially expressed proteins in the BxPC3, PANC-1, and HPDE cell lines. Bioinformatics analysis identified 15 epithelial to mesenchymal transition (EMT) markers and 13 EMT-related proteins that were closely associated with drug resistance were differentially expressed. Interestingly, 8 of these proteins were involved in glutathione and cysteine/methionine metabolism. These results suggest that proteins related to the EMT and glutathione metabolism play important roles in the development of intrinsic gemcitabine resistance by pancreatic cancer cell lines. PMID:25518923

  8. Oncogenic mutation profiling in new lung cancer and mesothelioma cell lines

    PubMed Central

    Lam, David CL; Luo, Susan Y; Deng, Wen; Kwan, Johnny SH; Rodriguez-Canales, Jaime; Cheung, Annie LM; Cheng, Grace HW; Lin, Chi-Ho; Wistuba, Ignacio I; Sham, Pak C; Wan, Thomas SK; Tsao, Sai-Wah

    2015-01-01

    Background Thoracic tumor, especially lung cancer, ranks as the top cancer mortality in most parts of the world. Lung adenocarcinoma is the predominant subtype and there is increasing knowledge on therapeutic molecular targets, namely EGFR, ALK, KRAS, and ROS1, among lung cancers. Lung cancer cell lines established with known clinical characteristics and molecular profiling of oncogenic targets like ALK or KRAS could be useful tools for understanding the biology of known molecular targets as well as for drug testing and screening. Materials and methods Five new cancer cell lines were established from pleural fluid or biopsy tissues obtained from Chinese patients with primary lung adenocarcinomas or malignant pleural mesothelioma. They were characterized by immunohistochemistry, growth kinetics, tests for tumorigenicity, EGFR and KRAS gene mutations, ALK gene rearrangement and OncoSeq mutation profiling. Results These newly established lung adenocarcinoma and mesothelioma cell lines were maintained for over 100 passages and demonstrated morphological and immunohistochemical features as well as growth kinetics of tumor cell lines. One of these new cell lines bears EML4-ALK rearrangement variant 2, two lung cancer cell lines bear different KRAS mutations at codon 12, and known single nucleotide polymorphism variants were identified in these cell lines. Discussion Four new lung adenocarcinoma and one mesothelioma cell lines were established from patients with different clinical characteristics and oncogenic mutation profiles. These characterized cell lines and their mutation profiles will provide resources for exploration of lung cancer and mesothelioma biology with regard to the presence of known oncogenic mutations. PMID:25653542

  9. SYSTEMATIC BLUESHIFT OF LINE PROFILES IN THE TYPE IIn SUPERNOVA 2010jl: EVIDENCE FOR POST-SHOCK DUST FORMATION?

    SciTech Connect

    Smith, Nathan; Bian, Fuyan; Weiner, Benjamin J.; Silverman, Jeffrey M.; Filippenko, Alexei V.; Cooper, Michael C.; Matheson, Thomas; Comerford, Julia M.

    2012-01-15

    Type IIn supernovae (SNe) show spectral evidence for strong interaction between their blast wave and dense circumstellar material (CSM) around the progenitor star. SN 2010jl was the brightest core-collapse supernova in 2010, and it was a Type IIn explosion with strong CSM interaction. Andrews et al. recently reported evidence for an infrared (IR) excess in SN 2010jl, indicating either new dust formation or the heating of CSM dust in an IR echo. Here we report multi-epoch spectra of SN 2010jl that reveal the tell-tale signature of new dust formation: emission-line profiles becoming systematically more blueshifted as the red side of the line is blocked by increasing extinction. The effect is seen clearly in the intermediate-width (400-4000 km s{sup -1}) component of H{alpha} beginning roughly 30 days after explosion. Moreover, we present near-IR spectra demonstrating that the asymmetry in the hydrogen-line profiles is wavelength dependent, appearing more pronounced at shorter wavelengths. This evidence suggests that new dust grains had formed quickly in the post-shock shell of SN 2010jl arising from CSM interaction. Since the observed dust temperature has been attributed to an IR echo and not to new dust, either (1) IR excess emission at {lambda} < 5 {mu}m is not a particularly sensitive tracer of new dust formation in SNe, or (2) some assumptions about expected dust temperatures might require further study. Lastly, we discuss one possible mechanism other than dust that might lead to increasingly blueshifted line profiles in SNe IIn, although the wavelength dependence of the asymmetry argues against this hypothesis in the case of SN 2010jl.

  10. Magnetospheric accretion models for T Tauri stars. 1: Balmer line profiles without rotation

    NASA Technical Reports Server (NTRS)

    Hartmann, Lee; Hewett, Robert; Calvet, Nuria

    1994-01-01

    We argue that the strong emission lines of T Tauri stars are generally produced in infalling envelopes. Simple models of infall constrained to a dipolar magnetic field geometry explain many peculiarities of observed line profiles that are difficult, if not impossible, to reproduce with wind models. Radiative transfer effects explain why certain lines can appear quite symmetric while other lines simultaneously exhibit inverse P Cygni profiles, without recourse to complicated velocity fields. The success of the infall models in accounting for qualitative features of observed line profiles supports the proposal that stellar magnetospheres disrupt disk accretion in T Tauri stars, that true boundary layers are not usually present in T Tauri stars, and that the observed 'blue veiling' emission arises from the base of the magnetospheric accretion column.

  11. Expression Profiling of Cell Lines Expressing Regulated NP2 Transcripts

    DTIC Science & Technology

    2004-09-01

    EGF in the presence or absence of exogenous HRS . The results will provide a framework fo r the interpretation of future gene expression studies in...e studies require further verification. Small sam- ple size, tissue heterogeneity, and inter-indivi- dual variations among human patients may result ... studies we proposed using gene expression profiling to determine change s in gene expression as a function of expression of the neurofibromatosis-2 (NF2

  12. On the diversity of the broad emission-line profiles in active galactic nuclei

    NASA Astrophysics Data System (ADS)

    Robinson, A.

    1995-02-01

    The profiles of the broad emission lines in active galactic nuclei (AGN) vary widely in both width and shape between objects. This diversity has important consquences for models of AGN. If the conventional view that the linewidths reflect bulk velocities of the emitting gas is correct, then differences in profile shape indicate that the structure and dynamics of the broad-line region may also differ among the AGN population, even within the same phenomenological class. In this paper, the nature and possible origin of the profile diversity are discussed in terms of a simple model based on a parametrization of some basic properties of the BLR-the radial depth, line emissivity distribution and velocity law-which govern the shape of the emitted line profile. For a given geometrical configuration, the profiles produced by this model can be characterized in terms of the relative width of the core and the curvature of the wings. It is proposed that variations in both of these properties are required to account for the diversity of the Hα and Hβ profiles in a sample of Seyfert galaxies. It is not possible to identify the underlying variables unambiguously, but in this interpretation the observed profile diversity implies variations in both the slope of the line emissivity distribution and either the radial depth or the velocity law. Variations in the former two properties imply in turn that the effective size of the BLR also varies among AGN, regardless of continuum luminosity. Several consequences which follow from this are briefly discussed.

  13. Cancer cell line identification by short tandem repeat profiling: power and limitations.

    PubMed

    Parson, Walther; Kirchebner, Romana; Mühlmann, Roswitha; Renner, Kathrin; Kofler, Anita; Schmidt, Stefan; Kofler, Reinhard

    2005-03-01

    Cancer cell lines are used worldwide in biological research, and data interpretation depends on unambiguous attribution of the respective cell line to its original source. Short-tandem-repeat (STR) profiling (DNA fingerprinting) is the method of choice for this purpose; however, the genetic stability of cell lines under various experimental conditions is not well defined. We tested the effect of long-term culture, subcloning, and generation of drug-resistant subclones on fingerprinting profiles in four widely used leukemia cell lines. The DNA fingerprinting profile remained unaltered in two of them (U937 and K562) throughout 12 months in culture, and the vast majority of subclones derived therefrom by limiting dilution after long-term culture revealed the same profile, indicating a high degree of stability and clonotypic homogeneity. In contrast, two other cell lines (CCRF-CEM and Jurkat) showed marked alterations in DNA fingerprinting profiles during long-term culture. Limiting dilution subcloning revealed extensive clonotypic heterogeneity with subclones differing in up to eight STR loci from the parental culture. Similar heterogeneity was observed in subclones generated by selection culture for drug resistance where DNA fingerprinting proved useful in identifying possible resistance mechanisms. Thus, common tissue culture procedures may dramatically affect the fingerprinting profile of certain cell lines and thus render definition of their origin difficult.

  14. Influence of non-adiabatic temperature variations on line profile variations of slowly rotating beta Cephei stars and SPBs. II. Simulations of line profile time series

    NASA Astrophysics Data System (ADS)

    De Ridder, J.; Dupret, M.-A.; Neuforge, C.; Aerts, C.

    2002-04-01

    We investigate to what extent non-adiabatic temperature variations at the surface of slowly rotating non-radially pulsating beta Cephei stars and slowly pulsating B stars affect silicon line profile variations. We use the non-adiabatic amplitudes of the effective temperature and gravity variation presented in Dupret et al. (\\cite{Dupret02}), together with a Kurucz intensity grid, to compute time series of line profile variations. Our simulations point out that the line shapes do not change significantly due to temperature variations. We find equivalent width variations of at most two percent of the mean equivalent width. We confront our results with observational equivalent width variations and with photometrically obtained effective temperature variations. Based on observations obtained with the Swiss photometric telescope and with the ESO/CAT telescope, at La Silla in Chile.

  15. Microbial Community Profile of a Lead Service Line Removed from a Drinking Water Distribution System▿

    PubMed Central

    White, Colin; Tancos, Matthew; Lytle, Darren A.

    2011-01-01

    A corroded lead service line was removed from a drinking water distribution system, and the microbial community was profiled using 16S rRNA gene techniques. This is the first report of the characterization of a biofilm on the surface of a corroded lead drinking water service line. The majority of phylotypes have been linked to heavy-metal-contaminated environments. PMID:21652741

  16. Microbial community profile of a lead service line removed from a drinking water distribution system.

    PubMed

    White, Colin; Tancos, Matthew; Lytle, Darren A

    2011-08-01

    A corroded lead service line was removed from a drinking water distribution system, and the microbial community was profiled using 16S rRNA gene techniques. This is the first report of the characterization of a biofilm on the surface of a corroded lead drinking water service line. The majority of phylotypes have been linked to heavy-metal-contaminated environments.

  17. Protein profiling of mouse livers with peroxisome proliferator-activated receptor alpha activation.

    PubMed

    Chu, Ruiyin; Lim, Hanjo; Brumfield, Laura; Liu, Hong; Herring, Chris; Ulintz, Peter; Reddy, Janardan K; Davison, Matthew

    2004-07-01

    Peroxisome proliferator-activated receptor alpha (PPARalpha) is important in the induction of cell-specific pleiotropic responses, including the development of liver tumors, when it is chronically activated by structurally diverse synthetic ligands such as Wy-14,643 or by unmetabolized endogenous ligands resulting from the disruption of the gene encoding acyl coenzyme A (CoA) oxidase (AOX). Alterations in gene expression patterns in livers with PPARalpha activation were delineated by using a proteomic approach to analyze liver proteins of Wy-14,643-treated and AOX(-/-) mice. We identified 46 differentially expressed proteins in mouse livers with PPARalpha activation. Up-regulated proteins, including acetyl-CoA acetyltransferase, farnesyl pyrophosphate synthase, and carnitine O-octanoyltransferase, are involved in fatty acid metabolism, whereas down-regulated proteins, including ketohexokinase, formiminotransferase-cyclodeaminase, fructose-bisphosphatase aldolase B, sarcosine dehydrogenase, and cysteine sulfinic acid decarboxylase, are involved in carbohydrate and amino acid metabolism. Among stress response and xenobiotic metabolism proteins, selenium-binding protein 2 and catalase showed a dramatic approximately 18-fold decrease in expression and a modest approximately 6-fold increase in expression, respectively. In addition, glycine N-methyltransferase, pyrophosphate phosphohydrolase, and protein phosphatase 1D were down-regulated with PPARalpha activation. These observations establish proteomic profiles reflecting a common and predictable pattern of differential protein expression in livers with PPARalpha activation. We conclude that livers with PPARalpha activation are transcriptionally geared towards fatty acid combustion.

  18. Evaluating Possible Heating Mechanisms Using the Transition Region Line Profiles of Late-Type Stars

    NASA Technical Reports Server (NTRS)

    Wood, Brian E.; Linsky, Jeffrey L.; Ayres, Thomas R.

    1997-01-01

    Our analysis of high-resolution Goddard High-Resolution Spectrograph (GHRS) spectra of late-type stars shows that the Si IV and C IV lines formed near 10(exp 5) K can be decomposed into the sum of two Gaussians, a broad component and a narrow component. We find that the flux contribution of the broad components is correlated with both the C IV and X-ray surface fluxes. For main-sequence stars, the widths of the narrow components suggest subsonic nonthermal velocities, and there appears to be a tight correlation between these nonthermal velocities and stellar surface gravity [xi(sub nc) varies as g(sup (-.68 +/-.07))]. For evolved stars with lower surface gravities, the nonthermal velocities suggested by the narrow components are at or just above the sound speed. Nonthermal velocities computed from the widths of the broad components are always highly supersonic. We propose that the broad components are diagnostics for microflare heating. Turbulent dissipation and Alfven waves are both viable candidates for the narrow component heating mechanism. A solar analog for the broad components might be the 'explosive events' detected by the High-Resolution Telescope and Spectrograph (HRTS) experiment. The broad component we observe for the Si IV lambda 1394 line of alpha Cen A, a star that is nearly identical to the Sun, has a FWHM of 109 +/- 10 km/s and is blueshifted by 9 +/- 3 km/s relative to the narrow component. Both of these properties are consistent with the properties of the solar explosive events. However, the alpha Cen A broad component accounts for 25% +/- 4% of the total Si IV line flux, while solar explosive events are currently thought to account for no more than 5% of the Sun's total transition region emission. This discrepancy must be resolved before the connection between broad components and explosive events can be positively established. In addition to our analysis of the Si IV and C IV lines of many stars, we also provide a more thorough analysis of all

  19. LINE PROFILES OF CORES WITHIN CLUSTERS. I. THE ANATOMY OF A FILAMENT

    SciTech Connect

    Smith, Rowan J.; Shetty, Rahul; Klessen, Ralf S.; Stutz, Amelia M.

    2012-05-01

    Observations are revealing the ubiquity of filamentary structures in molecular clouds. As cores are often embedded in filaments, it is important to understand how line profiles from such systems differ from those of isolated cores. We perform radiative transfer calculations on a hydrodynamic simulation of a molecular cloud in order to model line emission from collapsing cores embedded in filaments. We model two optically thick lines, CS(2-1) and HCN(1-0), and one optically thin line, N{sub 2}H{sup +}(1-0), from three embedded cores. In the hydrodynamic simulation, gas self-gravity, turbulence, and bulk flows create filamentary regions within which cores form. Though the filaments have large dispersions, the N{sub 2}H{sup +}(1-0) lines indicate subsonic velocities within the cores. We find that the observed optically thick line profiles of CS(2-1) and HCN(1-0) vary drastically with viewing angle. In over 50% of viewing angles, there is no sign of a blue asymmetry, an idealized signature of infall motions in an isolated spherical collapsing core. Profiles that primarily trace the cores, with little contribution from the surrounding filament, are characterized by a systematically higher HCN(1-0) peak intensity. The N{sub 2}H{sup +}(1-0) lines do not follow this trend. We demonstrate that red asymmetric profiles are also feasible in the optically thick lines, due to emission from the filament or one-sided accretion flows onto the core. We conclude that embedded cores may frequently undergo collapse without showing a blue asymmetric profile, and that observational surveys including filamentary regions may underestimate the number of collapsing cores if based solely on profile shapes of optically thick lines.

  20. Line Profiles of Cores within Clusters. I. The Anatomy of a Filament

    NASA Astrophysics Data System (ADS)

    Smith, Rowan J.; Shetty, Rahul; Stutz, Amelia M.; Klessen, Ralf S.

    2012-05-01

    Observations are revealing the ubiquity of filamentary structures in molecular clouds. As cores are often embedded in filaments, it is important to understand how line profiles from such systems differ from those of isolated cores. We perform radiative transfer calculations on a hydrodynamic simulation of a molecular cloud in order to model line emission from collapsing cores embedded in filaments. We model two optically thick lines, CS(2-1) and HCN(1-0), and one optically thin line, N2H+(1-0), from three embedded cores. In the hydrodynamic simulation, gas self-gravity, turbulence, and bulk flows create filamentary regions within which cores form. Though the filaments have large dispersions, the N2H+(1-0) lines indicate subsonic velocities within the cores. We find that the observed optically thick line profiles of CS(2-1) and HCN(1-0) vary drastically with viewing angle. In over 50% of viewing angles, there is no sign of a blue asymmetry, an idealized signature of infall motions in an isolated spherical collapsing core. Profiles that primarily trace the cores, with little contribution from the surrounding filament, are characterized by a systematically higher HCN(1-0) peak intensity. The N2H+(1-0) lines do not follow this trend. We demonstrate that red asymmetric profiles are also feasible in the optically thick lines, due to emission from the filament or one-sided accretion flows onto the core. We conclude that embedded cores may frequently undergo collapse without showing a blue asymmetric profile, and that observational surveys including filamentary regions may underestimate the number of collapsing cores if based solely on profile shapes of optically thick lines.

  1. The Case for General Relativistic Effects in the Fe K(alpha) Profile of an Active Galaxy

    NASA Technical Reports Server (NTRS)

    Turner, T. J.; Mushotzky, R.; Yaqoob, T.; George, I. M.; Snowden, S. L.; Netzer, H.; Kraemer, S. B.; Nandra, K.; Chelouche, D.; White, Nicholas E. (Technical Monitor)

    2002-01-01

    We present results from a simultaneous Chandra HETG (High Energy Transmission Grating) and XMM (X-ray Multi-mirror Mission)-Newton observation of NGC 3516. We find evidence for several narrow components of Fe K(alpha) along with a broad line. We consider the possibility that the lines arise in a blob of material ejected from the nucleus with velocity of approximately 0.25c. We also consider an origin in a neutral accretion disk, suffering enhanced illumination at 35 and 175 R(sub g), perhaps due to magnetic reconnection. The presence of these narrow features indicates there is no Comptonizing region along the line-of-sight to the nucleus. This in turn is compelling support for the hypothesis that broad Fe K(alpha) components are, in general, produced by strong gravity.

  2. Line Profile Asymmetries in Records from the Multichannel Flare Spectrograph

    NASA Astrophysics Data System (ADS)

    Prosecký, T.

    2007-05-01

    The archive of the Ondřejov Multichannel Flare Spectrograph (MFS) contains video records of several hundreds of flares observed between 1995 and 2004. This contribution shows preliminary results of basic statistical processing on a sample of 50 flares observed in the Hα line between May, 1999 and May, 2001. No significant differences between occurrence of red and blue asymmetries for different flare importance and X-ray classes were found. For the decay phase of a flare no visible asymmetry or faint blue asymmetry seems to be typical.

  3. LY-alpha Line Emission in a Field of Super-Clustered Damped LY-alpha Absorbers

    NASA Astrophysics Data System (ADS)

    Møller, Palle; Warren, Stephen J.

    1993-12-01

    The quasar pair Q2138-4427 and Q2139-4434 is separated by 8 arcmin on the sky (~ 6 Mpc), and they have correlated damped \\lya absorption (DLA) at two redshifts, z=2.380 and z=2.853 (Francis, P. J., and Hewett, P. C., 1993, AJ 105, 1633). On three nights in September 1993 we imaged the field of Q2138-4427 in B, I, and a narrow band tuned to the DLA at z=2.853. The observations were carried out with the ESO 3.6m telescope. We find two emission line candidates in the field. The two candidates have line fluxes similar to the three sources found in the field of Q0528-250 (M{\\o}ller, P., and Warren, S. J., 1993, \\aa 270, 43) but they are much brighter in the continuum. The two candidates are lying quite far from the quasar, so even if they are spectroscopically confirmed to be \\lya emitters, they are unlikely to be identified with the absorber. Their continuum fluxes make them more likely to be either OII emitters at low redshift, or high redshift AGNs associated with the super-cluster structure reported by Francis and Hewett. \\lya emission sources similar to the ones detected in the field of Q0528-250 are not seen. A comparison of these new results with our previous detections will allow us to draw general conclusions on the nature of the damped systems.

  4. Theoretical brightness temperature profiles of atmospheric pure H2 rotational quadrupole lines - Jupiter and Uranus

    NASA Technical Reports Server (NTRS)

    Goorvitch, D.; Chackerian, C., Jr.

    1977-01-01

    With the advent of high-resolution instruments and their use high above most of the telluric water vapor, the hydrogen pure rotational quadrupole lines at 28, 17, and 12 microns from the atmospheres of the outer planets may be observed. Best values for the line strengths, pressure-broadening coefficients, diffusion constants, and pressure shifts for these rotational transitions are calculated. The collisionally narrowed Galatry profile is used to calculate brightness temperature line profiles for these H2 transitions for the outer planets, Jupiter and Uranus. The effects of the H2 rotational-translational continuum and of the NH3 v2 band are also included.

  5. Pharmacological Profiles of Alpha 2 Adrenergic Receptor Agonists Identified Using Genetically Altered Mice and Isobolographic Analysis

    PubMed Central

    Fairbanks, Carolyn A.; Stone, Laura S.; Wilcox, George L.

    2009-01-01

    Endogenous, descending noradrenergic fibers convey powerful analgesic control over spinal afferent circuitry mediating the rostrad transmission of pain signals. These fibers target alpha 2 adrenergic receptors (α2ARs) on both primary afferent terminals and secondary neurons, and their activation mediates substantial inhibitory control over this transmission, rivaling that of opioid receptors which share similar a similar pattern of distribution. The terminals of primary afferent nociceptive neurons and secondary spinal dorsal horn neurons express α2AAR and α2CAR subtypes, respectively. Spinal delivery of these agents serves to reduce their side effects, which are mediated largely at supraspinal sites, by concentrating the drugs at the spinal level. Targeting these spinal α2ARs with one of five selective therapeutic agonists, clonidine, dexmedetomidine, brimonidine, ST91 and moxonidine, produces significant antinociception that can work in concert with opioid agonists to yield synergistic antinociception. Application of several genetically altered mouse lines had facilitated identification of the primary receptor subtypes that likely mediate the antinociceptive effects of these agents. This review provides first an anatomical description of the localization of the three subtypes in the central nervous system, second a detailed account of the pharmacological history of each of these six primary agonists, and finally a comprehensive report of the specific interactions of other GPCR agonists with each of the six principal α2AR agonists featured. PMID:19393691

  6. Recombination rates, Resonance Strengths and Line Profiles of Dielectronic Satellite Lines of He-like Ca, Fe, Ni

    NASA Astrophysics Data System (ADS)

    Nahar, S. N.; Oelgoetz, J.; Pradhan, A. K.

    2009-03-01

    Dielectronic satellite (DES) lines arising from the radiative decay of ions with excited cores are used as diagnostics of the plasma conditions found in astronomical objects. In collisional plasmas, the most common DES lines are due to an electron being dielectronically captured by a He-like ion, forming a 3-electron, Li-like ion in a doubly excited, autoionizing state (i.e. 1s2l2l' (KLL), 1s2l3l' (KLM), etc). These states can decay to bound levels by emitting a photon, completing a process known as dielectronic recombination (DR). The autoionizing KLL complex gives rise to 22 DES lines, labeled `a' through `v', via transitions of the type 1s2l2l'→ls^22l. These lines are seen at energies lower than the He-like resonance line (1s2p(^1P^0_1)→ 1s^2(^1S_0) - which is also referred to as the `w' line). The unified recombination method, which treats photoionization and electron-ion recombination in a manner which couples autoionizing states to the continuum, has been extended to study the DES lines of the highly charged ions Ca XVIII, Fe XXIV, and Ni XXVI. In contrast to obtaining a single energy point for a DES line (as is the case for existing theoretical approaches based on the isolated resonance approximation - IRA), the unified method: (i) provides detailed profiles of DES lines, including the blending of lines which occurs in nature, (ii) includes the background contribution of radiative recombination (RR), and (iii) provides a simple relation between the resonance strengths and recombination rates of narrow lines which is useful for astrophysical modeling.

  7. Microlensing of circumstellar envelopes. III. Line profiles from stellar winds in homologous expansion

    NASA Astrophysics Data System (ADS)

    Hendry, M. A.; Ignace, R.; Bryce, H. M.

    2006-05-01

    This paper examines line profile evolution due to the linear expansion of circumstellar material obsverved during a microlensing event. This work extends our previous papers on emission line profile evolution from radial and azimuthal flow during point mass lens events and fold caustic crossings. Both "flavours" of microlensing were shown to provide effective diagnostics of bulk motion in circumstellar envelopes. In this work a different genre of flow is studied, namely linear homologous expansion, for both point mass lenses and fold caustic crossings. Linear expansion is of particular relevance to the effects of microlensing on supernovae at cosmological distances. We derive line profiles and equivalent widths for the illustrative cases of pure resonance and pure recombination lines, modelled under the Sobolev approximation. The efficacy of microlensing as a diagnostic probe of the stellar environs is demonstrated and discussed.

  8. Fiber Optic Picosecond Laser Pulse Transmission Line for Hydrogen Ion Beam Profile Measurement

    SciTech Connect

    Liu, Yun; Huang, Chunning; Aleksandrov, Alexander V

    2013-01-01

    We present a fiber optic laser pulse transmission line for non-intrusive longitudinal profile measurement of the hydrogen ion (H-) beam at the front-end of the Spallation Neutron Source (SNS) accelerator. The 80.5 MHz, 2.5 ps, multi-killowatt optical pulses are delivered to the accelerator beam line through a large mode area polarization maintaining optical fiber to ensure a high measurement stability. The transmission efficiency, output laser beam quality, pulse jitter and pulse width broadening over a 100-ft fiber line are experimentally investigated. A successful measurement of the H- beam microbunch (~130 ps) profile is obtained. Our experiment is the first demonstration of particle beam profile diagnostics using fiber optic laser pulse transmission line.

  9. Observation on Stark-shifts of Lyman Alpha lines of low-Z ions in laser-produced plasmas

    NASA Astrophysics Data System (ADS)

    Hashimoto, S.; Yamaguchi, N.

    1982-07-01

    The red shifts were observed for Lyman alpha lines of Be IV, B V, C VI, and N VII at an electron density of 5 x 10 to the 21st power cm(-3). The high density plasma ws produced by a 0.1 TW and 100 ps laser irradiation onto a plane target. The shift was measured by comparing the position of highly broadened line center with that of spatially resolved unperturbed one in a single shot photograph. The results are compared with simple theoretical estimations.

  10. Variability of Hell and hydrogen line profiles in the spectrum of HD 93521

    NASA Astrophysics Data System (ADS)

    Rzaev, A. Kh.; Panchuk, V. E.

    2008-03-01

    We have studied the variability of the Hell λλ 4686 and 5411 Å H β, and H α lines in the spectrum of the pulsating star HD 93521. All these line profiles display the same variability pattern relative to the average profiles: a sinusoidal wave that moves systematically from the short-to the long-wavelength wing of the profile. This variability is due to non-radial pulsations. To study the pulsation movements and stratification of the radial velocity in the atmosphere of HD 93521, we analyzed the variability of the radial velocities measured individually for the blue and red halves of the absorption profile at the half-level of the line intensity. The periods and amplitudes of this radial-velocity variability are different for different lines and are well correlated with their central depths. In the transition from weak to strong lines (i.e., from lower to upper layers of the atmosphere), the period of the radial-velocity variations measured using both halves of the absorption profile increases, while its amplitude decreases. When the morphology and variability of photospheric and wind-driven lines are compared, it is clear that the variability of their absorption components is due to the same process—non-radial pulsations. In this way, the non-radial pulsations partly affect the variability of the stellar wind. The effect of the stellar wind on the profiles of strong lines is observed as a variable absorption feature that moves along the profiles synchronous with the axial rotation of the star.

  11. Gene expression profile changes correlating with radioresistance in human cell lines

    SciTech Connect

    Ishikawa, Ken-ichi; Koyama-Saegusa, Kumiko; Otsuka, Yoshimi; Ishikawa, Atsuko; Kawai, Seiko; Yasuda, Kaori; Suga, Tomo; Michikawa, Yuichi; Suzuki, Masao; Iwakawa, Mayumi; Imai, Takashi . E-mail: imait@nirs.go.jp

    2006-05-01

    Purpose: To identify gene expression profiles specific to radioresistance of human cells. Methods and Materials: Global gene expression profiles of a total of 15 tumor and normal fibroblast cell lines were analyzed using DNA microarrays and statistical clustering methods. Initially, six of the cell lines were categorized into radioresistant (RG) or nonradioresistant (NRG) groups according to the radiation dose required to reduce their survival to 10% (D{sub 1}). Genes for which expression was specific to each group at 1 or 3 h after irradiation were identified using statistical procedures including analysis of variance and a two-dimensional hierarchical clustering method. The remaining nine cell lines were subjected to the k-nearest neighbor pattern classification. Results: The nine test cell lines were successfully classified by their D{sub 1} value using 46 and 44 genes for which transcription levels had significantly changed at 1 and 3 h after irradiation, respectively. Of these genes, 25 showed altered expression at both time points in the NRG or RG, but independently were unable to classify the test cell lines. Conclusions: Radioresistant cell lines analyzed in this study showed certain radiation-induced changes in gene expression profiles that are different from the profile changes of the more-sensitive cell lines.

  12. Uranus' (3-0) H2 quadrupole line profiles

    NASA Astrophysics Data System (ADS)

    Trafton, L.

    1987-04-01

    Spectra of Uranus' S3(0) and S3(1) H2 quadrupole lines, obtained during the 1978-1980 apparitions, are analyzed, and are found to require the presence of a deep cloud. Modifications of the Baines and Bergstralh (1986) standard model, including an additional haze layer above the 16-km-am H2 level which contains strongly absorbing particles, are needed to fit the observations. For a Rayleigh phase function, such a haze (uniformly mixed with the gas above this level) would have an absorption optical depth of 0.16 and a single scattering particle albedo of 0.30. This modification would imply a fraction of normal H2 equal to 0.25 + or - 0.10, in agreement with the Baines and Bergstralh standard model.

  13. Beam profile monitor system for the Bevalac transfer line

    SciTech Connect

    Stover, G.

    1985-05-01

    Incorporated in the current Bevalac transfer line upgrade project is a proposal for a new electronic beam monitoring system. It will be designed to amplify, convert, and transmit the signals of twelve 16 by 16 multi-wire grids to a central computer located in the Bevatron control room. Each station will contain interface amplifiers and a local microprocessor to convert wire grid currents into digitized values which will then be transmitted via a serial data channel to the main computer. The system will have a large dynamic range (1 nano to 1 milli-ampere of beam current), be designed for distributed operation, and will be easily expandable. This paper describes the basic electronic hardware and software components of the proposed system. 10 refs., 3 figs.

  14. DNA profiling analysis of endometrial and ovarian cell lines reveals misidentification, redundancy and contamination.

    PubMed

    Korch, Christopher; Spillman, Monique A; Jackson, Twila A; Jacobsen, Britta M; Murphy, Susan K; Lessey, Bruce A; Jordan, V Craig; Bradford, Andrew P

    2012-10-01

    Cell lines derived from human ovarian and endometrial cancers, and their immortalized non-malignant counterparts, are critical tools to investigate and characterize molecular mechanisms underlying gynecologic tumorigenesis, and facilitate development of novel therapeutics. To determine the extent of misidentification, contamination and redundancy, with evident consequences for the validity of research based upon these models, we undertook a systematic analysis and cataloging of endometrial and ovarian cell lines. Profiling of cell lines by analysis of DNA microsatellite short tandem repeats (STR), p53 nucleotide polymorphisms and microsatellite instability was performed. Fifty-one ovarian cancer lines were profiled with ten found to be redundant and five (A2008, OV2008, C13, SK-OV-4 and SK-OV-6) identified as cervical cancer cells. Ten endometrial cell lines were analyzed, with RL-92, HEC-1A, HEC-1B, HEC-50, KLE, and AN3CA all exhibiting unique, uncontaminated STR profiles. Multiple variants of Ishikawa and ECC-1 endometrial cancer cell lines were genotyped and analyzed by sequencing of mutations in the p53 gene. The profile of ECC-1 cells did not match the EnCa-101 tumor, from which it was reportedly derived, and all ECC-1 isolates were genotyped as Ishikawa cells, MCF-7 breast cancer cells, or a combination thereof. Two normal, immortalized endometrial epithelial cell lines, HES cells and the hTERT-EEC line, were identified as HeLa cervical carcinoma and MCF-7 breast cancer cells, respectively. Results demonstrate significant misidentification, duplication, and loss of integrity of endometrial and ovarian cancer cell lines. Authentication by STR DNA profiling is a simple and economical method to verify and validate studies undertaken with these models. Copyright © 2012 Elsevier Inc. All rights reserved.

  15. Effects of Coenzyme Q10 on TNF-alpha secretion in human and murine monocytic cell lines.

    PubMed

    Schmelzer, Constance; Lorenz, Gerti; Lindner, Inka; Rimbach, Gerald; Niklowitz, Petra; Menke, Thomas; Döring, Frank

    2007-01-01

    Studies in humans and cell culture as well as bioinformatics suggested that Coenzyme Q(10) (CoQ10) functions as an anti-inflammatory molecule. Here we studied the influence of CoQ10 (Kaneka Q10) on secretion of the pro-inflammatory cytokine tumor necrosis factor-alpha (TNF-alpha) by using the human and murine monocytic cell lines THP-1 and RAW264.7 expressing human apolipoprotein E3 (apoE3) or pro-inflammatory apoE4. Incubation of cells with physiological (0.1-10 microM) and supra-physiological (> 10 to < 100 microM) concentrations of CoQ10 led to an intracellular accumulation of its reduced form without any cytotoxic effects. Stimulation of cell models with lipopolysaccharide (LPS) resulted in a substantially release of TNF-alpha. When THP-1 cells were pre-incubated with 10 microM CoQ10, the LPS-induced TNF-alpha release was significantly decreased to 72 +/- 32%. This effect is similar to those obtained by 10 microM N-Acetyl-Cysteine, a well known reference antioxidant. In RAW264.7-apoE3 and -apoE4 cells, significant reductions of LPS-induced TNF-alpha secretion to 73.3 +/- 2.8% and 74.7 +/- 8.9% were found with 2.5 microM and 75 microM CoQ10, respectively. In conclusion, CoQ10 has moderate anti-inflammatory effects in two monocytic cell lines which could be mediated by its antioxidant activity.

  16. Theoretical profiles of the Mg+ resonance lines perturbed by collisions with He

    NASA Astrophysics Data System (ADS)

    Allard, N. F.; Guillon, G.; Alekseev, V. A.; Kielkopf, J. F.

    2016-08-01

    Context. The effects of collision broadening by He are central to understanding the opacity of cool stellar atmospheres. Aims: DZ white dwarfs show metal lines which are, in many cases, believed to come from some rocky material, a remnant of a former exoplanetary system. The analysis of the Mg+ resonance lines is a valuable method to determine the chemical abundances in these systems. Methods: Unified profiles of the strongest of the UV lines of Mg+ have been calculated in the semi-classical approach using very recent ab initio potential energies. Results: We present the first theoretical line profile calculations of the resonance lines of Mg+ that have been perturbed by helium in physical conditions of atmospheres in helium-rich white dwarfs with metal traces.

  17. Winds from T Tauri stars. II - Balmer line profiles for inner disk winds

    NASA Technical Reports Server (NTRS)

    Calvet, Nuria; Hartmann, Lee; Hewett, Robert

    1992-01-01

    Results are presented of calculations of Balmer emission line profiles using escape probability methods for T Tauri wind models with nonspherically symmetric geometry. The wind is assumed to originate in the inner regions of an accretion disk surrounding the T Tauri star, and flows outward in a 'cone' geometry. Two types of wind models are considered, both with monotonically increasing expansion velocities as a function of radial distance. For flows with large turbulent velocities, such as the HF Alfven wave-driven wind models, the effect of cone geometry is to increase the blue wing emission, and to move the absorption reversal close to line center. Line profiles for a wind model rotating with the same angular velocity as the inner disk are also calculated. The Balmer lines of this model are significantly broader than observed in most objects, suggesting that the observed emission lines do not arise in a region rotating at Keplerian velocity.

  18. N-linked glycan profiling in neuroblastoma cell lines.

    PubMed

    Hu, Yunli; Mayampurath, Anoop; Khan, Saira; Cohen, Joanna K; Mechref, Yehia; Volchenboum, Samuel L

    2015-05-01

    Although MYCN amplification has been associated with aggressive neuroblastoma, the molecular mechanisms that differentiate low-risk, MYCN-nonamplified neuroblastoma from high-risk, MYCN-amplified disease are largely unknown. Genomic and proteomic studies have been limited in discerning differences in signaling pathways that account for this heterogeneity. N-Linked glycosylation is a common protein modification resulting from the attachment of sugars to protein residues and is important in cell signaling and immune response. Aberrant N-linked glycosylation has been routinely linked to various cancers. In particular, glycomic markers have often proven to be useful in distinguishing cancers from precancerous conditions. Here, we perform a systematic comparison of N-linked glycomic variation between MYCN-nonamplified SY5Y and MYCN-amplified NLF cell lines with the aim of identifying changes in sugar abundance linked to high-risk neuroblastoma. Through a combination of liquid chromatography-mass spectrometry and bioinformatics analysis, we identified 16 glycans that show a statistically significant change in abundance between NLF and SY5Y samples. Closer examination revealed the preference for larger (in terms of total monosaccharide count) and more sialylated glycan structures in the MYCN-amplified samples in comparison to smaller, nonsialylated glycans that are more dominant in the MYCN-nonamplified samples. These results offer clues for deriving marker candidates for accurate neuroblastoma risk diagnosis.

  19. Bioenergetic Analysis of Ovarian Cancer Cell Lines: Profiling of Histological Subtypes and Identification of a Mitochondria-Defective Cell Line

    PubMed Central

    Dier, Usawadee; Shin, Dong-Hui; Hemachandra, L. P. Madhubhani P.; Uusitalo, Larissa M.; Hempel, Nadine

    2014-01-01

    Epithelial ovarian cancer (EOC) is the most lethal of all gynecological cancers, and encompasses distinct histological subtypes that have specific genetic and tissues-of-origin differences. Ovarian clear cell carcinoma (OCCC) represents approximately 10% of cases and has been termed a stress responsive cancer. OCCC is characterized by increased expression of oxidative stress and glycolysis-related genes. In the present study, we hypothesized that bioenergetic profiling might uniquely distinguish OCCC from other EOC histological subtypes. Using an extracellular flux analyzer, OCCC lines (ES-2, TOV-21-G) were shown to be highly metabolically active, with high oxygen consumption rate (OCR) and high extracellular acidification rate (ECAR), indicative of enhanced mitochondrial oxidative phosphorylation and glycolytic rate, respectively. A high bioenergetics profile was associated with the cell lines' ability to form anchorage independent spheroids. Given their high glycolytic and mitochondrial activity, OCCC cells displayed strong sensitivity to 2-deoxy-D-glucose and Rotenone growth inhibition, although this chemosensitivity profile was not specific to only OCCC cells. Bioenergetic profiling also identified a non-OCCC cell line, OVCA420, to have severely compromised mitochondrial function, based on low OCR and a lack of stimulation of maximal respiration following application of the uncoupler FCCP. This was accompanied by mitochondrial morphology changes indicative of enhanced fission, increased expression of the mitochondrial fission protein Drp1, a loss of mitochondrial membrane potential and dependence on glycolysis. Importantly, this loss of mitochondrial function was accompanied by the inability of OVCA420 cells to cope with hypoxic stress, and a compromised ability to stabilize HIF-1α in response to 1% O2 hypoxia. This knowledge may be imperative for researchers planning to utilize this cell line for further studies of metabolism and hypoxia, and suggests that

  20. Bioenergetic analysis of ovarian cancer cell lines: profiling of histological subtypes and identification of a mitochondria-defective cell line.

    PubMed

    Dier, Usawadee; Shin, Dong-Hui; Hemachandra, L P Madhubhani P; Uusitalo, Larissa M; Hempel, Nadine

    2014-01-01

    Epithelial ovarian cancer (EOC) is the most lethal of all gynecological cancers, and encompasses distinct histological subtypes that have specific genetic and tissues-of-origin differences. Ovarian clear cell carcinoma (OCCC) represents approximately 10% of cases and has been termed a stress responsive cancer. OCCC is characterized by increased expression of oxidative stress and glycolysis-related genes. In the present study, we hypothesized that bioenergetic profiling might uniquely distinguish OCCC from other EOC histological subtypes. Using an extracellular flux analyzer, OCCC lines (ES-2, TOV-21-G) were shown to be highly metabolically active, with high oxygen consumption rate (OCR) and high extracellular acidification rate (ECAR), indicative of enhanced mitochondrial oxidative phosphorylation and glycolytic rate, respectively. A high bioenergetics profile was associated with the cell lines' ability to form anchorage independent spheroids. Given their high glycolytic and mitochondrial activity, OCCC cells displayed strong sensitivity to 2-deoxy-D-glucose and Rotenone growth inhibition, although this chemosensitivity profile was not specific to only OCCC cells. Bioenergetic profiling also identified a non-OCCC cell line, OVCA420, to have severely compromised mitochondrial function, based on low OCR and a lack of stimulation of maximal respiration following application of the uncoupler FCCP. This was accompanied by mitochondrial morphology changes indicative of enhanced fission, increased expression of the mitochondrial fission protein Drp1, a loss of mitochondrial membrane potential and dependence on glycolysis. Importantly, this loss of mitochondrial function was accompanied by the inability of OVCA420 cells to cope with hypoxic stress, and a compromised ability to stabilize HIF-1α in response to 1% O2 hypoxia. This knowledge may be imperative for researchers planning to utilize this cell line for further studies of metabolism and hypoxia, and suggests that

  1. Line profile measurement of advanced-FinFET features by reference metrology

    NASA Astrophysics Data System (ADS)

    Takamasu, Kiyoshi; Iwaki, Yuuki; Takahashi, Satoru; Kawada, Hiroki; Ikota, Masami; Yamaguchi, Atsuko; Lorusso, Gian F.; Horiguchi, Naoto

    2015-03-01

    A novel method of sub-nanometer uncertainty for the line profile measurement using TEM (Transmission Electron Microscope) images is proposed to calibrate CD-SEM (Critical Dimension Scanning Electron Microscope) line width measurement and to standardize line profile measurement through reference metrology. The proposed method has been validated for profile of Si line and photoresist features in our previous investigations. In this article, we apply the methodology to line profile measurements of advanced-FinFET (Fin-shaped Field-Effect Transistor) features. The FinFET features are sliced as thin specimens of 100 nm thickness by FIB (Focused Ion Beam) micro sampling system. Cross-sectional images of the specimens are obtained then by TEM. The profiles of fin, hardmask and dummy gate of FinFET features are evaluated using TEM images. The width of fin, the length of hardmask, and the length of dummy gate of FinFET features are measured and compared to CD-SEM measurement. The TEM results will be used to implement CD-SEM and CD-AFM reference metrology.

  2. Induction of retinoic acid receptor-alpha by granulocyte macrophage colony-stimulating factor in human myeloid leukemia cell lines.

    PubMed

    Shimizu, T; Takeda, K

    2000-08-15

    We reported previously that treatment with all-trans retinoic acid (ATRA) and granulocyte macrophage colony-stimulating factor (GM-CSF) induces differentiation of human myeloblastic leukemia ML-1 cells to granulocytes, whereas treatment with ATRA alone induces practically no differentiation of these cells. To investigate the mechanism of the synergistic effect of these factors, we examined the effect of GM-CSF on retinoic acid receptors (RARs) and retinoid X receptors (RXRs) in ML-1 cells. We reveal that GM-CSF induces the expression of RAR alpha mRNA and protein and stimulates the binding of nuclear proteins to direct repeat 5, a consensus sequence with high affinity for RAR-RXR heterodimers. Furthermore, expression of CD38 mRNA mediated through RAR alpha is induced synergistically by treatment with ATRA + GM-CSF. These results suggest that GM-CSF stimulates transcriptional activity mediated via RAR alpha in ML-1 cells. The induction of RAR alpha by GM-CSF may therefore be a mechanism for stimulation by GM-CSF. The induction of RAR alpha by GM-CSF was also detected in other myeloid leukemia cell lines (THP-1 and KG-1) that showed a synergistic effect similar to that seen in ML-1 cells in response to ATRA + GM-CSF. We also found that GM-CSF induced the expression of RAR alpha in blood cells obtained from patients with acute myeloid leukemia. This activity of GM-CSF may serve as a useful adjunct to differentiation therapy for retinoic acid-nonresponsive leukemias.

  3. Horizontal profile of a moving red line cusp aurora

    NASA Astrophysics Data System (ADS)

    Taguchi, S.; Chiba, Y.; Hosokawa, K.; Ogawa, Y.

    2017-03-01

    Auroral emission at a wavelength of 630.0 nm (red line) has a long radiative time. In this study, we show how this long radiative time controls the horizontal extent of a moving mesoscale aurora, which is typical of the cusp. Using high time resolution (4 s) observations by an all-sky imager at Longyearbyen, Svalbard, and observations by the European Incoherent Scatter Svalbard Radar (ESR), we examined the auroral emission enhancements obtained in the cusp during an interval of southward interplanetary magnetic field on 27 November 2011. Simultaneous observations from the all-sky imager and the ESR clearly show the manner in which auroral emission regions passed through the radar's field of view. When the front edge of the moving auroral structure intersected the radar's field of view, the ESR electron temperature was enhanced. A few minutes later, the ESR electron temperature dropped to the background level, indicating that the mesoscale electron precipitation region shifted away from the radar's field of view. At that time, the auroral emission in the radar's field of view decreased but still had adequate intensities. These results provide evidence demonstrating that moving cusp auroral emission occurs behind the electron precipitation region as well as inside that region. We interpreted this feature semiquantitatively by using the equation of continuity of the density of the excited atomic oxygen. Our model indicates that the maximum intensity in the moving auroral structure occurs at a point along the trailing edge of the electron precipitation region and that the velocity of that region is important for determining how the 630.0 nm aurora emissions extend horizontally.

  4. On the quantitative method for measurement and analysis of the fine structure of Fraunhofer line profiles

    NASA Astrophysics Data System (ADS)

    Kuli-Zade, D. M.

    The methods of measurement and analysis of the fine structure of weak and moderate Fraunhofer line profiles are considered. The digital spectral materials were obtained using rapid scanning high dispersion and high resolution double monochromators. The methods of asymmetry coefficient, bisector method and new quantitative method pro- posed by the author are discussed. The new physical values of differential, integral, residual and relative asymmetries are first introduced. These quantitative values permit us to investigate the dependence of asymmetry on microscopic (atomic) and macro- scopic (photospheric) values. It is shown that the integral profile asymmetries grow appreciably with increase in line equivalent width. The average effective depths of the formation of used Fraunhofer lines in the photosphere of the Sun are determined. It is shown that with the increasing of the effective formation depths of the lines integral and residual asymmetries of the lines profiles noticeably decrease. It is in fine agree- ment with the results of intensity dependence of asymmetry. The above-mentioned methods are critically compared and the advantages of author's method are shown. The computer program of calculation of the line-profile asymmetry parameters has been worked out.

  5. Reduced interferon-alpha production by Epstein-Barr virus transformed B-lymphoblastoid cell lines and lectin-stimulated lymphocytes in congenital dyserythropoietic anaemia type I.

    PubMed

    Wickramasinghe, S N; Hasan, R; Smythe, J

    1997-08-01

    The concentrations of interferon-alpha (IFN-alpha) in supernatants from cultures of Epstein-Barr virus (EBV) transformed B-lymphoblastoid cell lines derived from seven patients with congenital dyserythropoietic anaemia (CDA) type I were below the 95% confidence limits for those derived from six healthy subjects. In contrast, the concentrations of IFN-alpha in supernatants from cultures of EBV-transformed lymphoblastoid cell lines derived from four patients with other types of CDA and four patients with hereditary sideroblastic anaemia were normal. Supernatants from cultures of peripheral blood lymphocytes stimulated with phytohaemagglutinin or pokeweed mitogen contained less IFN-alpha when the cells were derived from patients with CDA type I than when derived from healthy subjects. Since patients with CDA type I show a substantial haematological response to treatment with IFN-alpha, the data suggest that impaired IFN-alpha production may be an important pathogenetic mechanism in CDA type I.

  6. Does the Iron K and Alpha: Line of Active Galactic Nuclei Arise from the Cerenkov Line-like Radiation?

    NASA Technical Reports Server (NTRS)

    You, J. H.; Liu, D. B.; Chen, W. P.; Chen, L.; Zhang, S. N.

    2003-01-01

    When thermal relativistic electrons with isotropic distribution of velocities move in a gas region or impinge upon the surface of a cloud that consists of a dense gas or doped dusts, the Cerenkov effect produces peculiar atomic or ionic emission lines, which is known as the Cerenkov line - like radiation. This newly recognized emission mechanism may find wide applications in high-energy astrophysics. In this paper we tentatively adopt this new line emission mechanism to discuss the origin of the iron Kα feature of active galactic nuclei (AGNs). The motivation of this research is to attempt a solution to a problem encountered by the "disk fluorescence line" model, i.e. , the lack of temporal response of the observed iron Kα line flux to the changes of the X-ray continuum flux. If the Cerenkov line emission is indeed responsible significant ly for the iron Kα feature, the conventional scenario around the central supermassive black holes of AGNs would need to be modified to accomodate more energetic, more violent, and much denser environments than previously thought.

  7. Does the Iron K and Alpha: Line of Active Galactic Nuclei Arise from the Cerenkov Line-like Radiation?

    NASA Technical Reports Server (NTRS)

    You, J. H.; Liu, D. B.; Chen, W. P.; Chen, L.; Zhang, S. N.

    2003-01-01

    When thermal relativistic electrons with isotropic distribution of velocities move in a gas region or impinge upon the surface of a cloud that consists of a dense gas or doped dusts, the Cerenkov effect produces peculiar atomic or ionic emission lines, which is known as the Cerenkov line - like radiation. This newly recognized emission mechanism may find wide applications in high-energy astrophysics. In this paper we tentatively adopt this new line emission mechanism to discuss the origin of the iron Kα feature of active galactic nuclei (AGNs). The motivation of this research is to attempt a solution to a problem encountered by the "disk fluorescence line" model, i.e. , the lack of temporal response of the observed iron Kα line flux to the changes of the X-ray continuum flux. If the Cerenkov line emission is indeed responsible significant ly for the iron Kα feature, the conventional scenario around the central supermassive black holes of AGNs would need to be modified to accomodate more energetic, more violent, and much denser environments than previously thought.

  8. Alpha2-adrenoreceptors profile modulation. 4. From antagonist to agonist behavior.

    PubMed

    Gentili, Francesco; Cardinaletti, Claudia; Vesprini, Cristian; Carrieri, Antonio; Ghelfi, Francesca; Farande, Aniket; Giannella, Mario; Piergentili, Alessandro; Quaglia, Wilma; Laurila, Jonne M; Huhtinen, Anna; Scheinin, Mika; Pigini, Maria

    2008-07-24

    The goal of the present study was to modulate the receptor interaction properties of known alpha 2-adrenoreceptor (AR) antagonists to obtain novel alpha 2-AR agonists with desirable subtype selectivity. Therefore, a phenyl group or one of its bioisosteres or aliphatic moieties with similar steric hindrance were introduced into the aromatic ring of the antagonist lead basic structure. The functional properties of the novel compounds allowed our previous observations to be confirmed. The high efficacy of 7, 12, and 13 as alpha 2-AR agonists and the significant alpha 2C-AR subtype selective activation displayed by 11 and 15 demonstrated that favorable interactions to induce alpha 2-AR activation were formed between the pendant groups of the ligands and the aromatic cluster present in transmembrane domain 6 of the binding site cavity of the receptors.

  9. THE SCATTERING POLARIZATION OF THE Ly{alpha} LINES OF H I AND He II TAKING INTO ACCOUNT PARTIAL FREQUENCY REDISTRIBUTION AND J-STATE INTERFERENCE EFFECTS

    SciTech Connect

    Belluzzi, Luca; Trujillo Bueno, Javier; Stepan, Jiri

    2012-08-10

    Recent theoretical investigations have pointed out that the cores of the Ly{alpha} lines of H I and He II should show measurable scattering polarization signals when observing the solar disk, and that the magnetic sensitivity, through the Hanle effect, of such linear polarization signals is suitable for exploring the magnetism of the solar transition region. Such investigations were carried out in the limit of complete frequency redistribution (CRD) and neglecting quantum interference between the two upper J-levels of each line. Here we relax both approximations and show that the joint action of partial frequency redistribution and J-state interference produces much more complex fractional linear polarization (Q/I) profiles, with large amplitudes in their wings. Such wing polarization signals turn out to be very sensitive to the temperature structure of the atmospheric model, so that they can be exploited for constraining the thermal properties of the solar chromosphere. Finally, we show that the approximation of CRD without J-state interference is however suitable for estimating the amplitude of the linear polarization signals in the core of the lines, where the Hanle effect operates.

  10. Electron density profile measurements from hydrogen line intensity ratio method in Versatile Experiment Spherical Torus

    NASA Astrophysics Data System (ADS)

    Kim, YooSung; Shi, Yue-Jiang; Yang, Jeong-hun; Kim, SeongCheol; Kim, Young-Gi; Dang, Jeong-Jeung; Yang, Seongmoo; Jo, Jungmin; Oh, Soo-Ghee; Chung, Kyoung-Jae; Hwang, Y. S.

    2016-11-01

    Electron density profiles of versatile experiment spherical torus plasmas are measured by using a hydrogen line intensity ratio method. A fast-frame visible camera with appropriate bandpass filters is used to detect images of Balmer line intensities. The unique optical system makes it possible to take images of Hα and Hβ radiation simultaneously, with only one camera. The frame rate is 1000 fps and the spatial resolution of the system is about 0.5 cm. One-dimensional local emissivity profiles have been obtained from the toroidal line of sight with viewing dumps. An initial result for the electron density profile is presented and is in reasonable agreement with values measured by a triple Langmuir probe.

  11. Electron density profile measurements from hydrogen line intensity ratio method in Versatile Experimental Spherical Torus

    SciTech Connect

    Kim, YooSung; Shi, Yue-Jiang Yang, Jeong-hun; Kim, SeongCheol; Kim, Young-Gi; Dang, Jeong-Jeung; Yang, Seongmoo; Jo, Jungmin; Chung, Kyoung-Jae; Oh, Soo-Ghee; Hwang, Y. S.

    2016-11-15

    Electron density profiles of versatile experiment spherical torus plasmas are measured by using a hydrogen line intensity ratio method. A fast-frame visible camera with appropriate bandpass filters is used to detect images of Balmer line intensities. The unique optical system makes it possible to take images of H{sub α} and H{sub β} radiation simultaneously, with only one camera. The frame rate is 1000 fps and the spatial resolution of the system is about 0.5 cm. One-dimensional local emissivity profiles have been obtained from the toroidal line of sight with viewing dumps. An initial result for the electron density profile is presented and is in reasonable agreement with values measured by a triple Langmuir probe.

  12. De-coding the Neutral Hydrogen (21cm) Line Profiles of Disk galaxies

    NASA Astrophysics Data System (ADS)

    Moak, Sandy; Madore, Barry; Khatami, David

    2017-01-01

    Neutral hydrogen is the most abundant element in the interstellar medium, and it has long lent astronomers insight into galaxy structure, galactic interactions, and even dark matter prevalence. It is necessary to implement a detailed coding scheme that characterizes the 21-cm HI line profiles which exist in abundance throughout literature. We have utilized a new computer simulation program that exposes the internal architecture of a galaxy by way of mapping the one-dimensional line profile on to the three-dimensional parameters of a given galaxy. We have created a naming system to classify HI line profiles, which represents a kinematic description of the galaxy simply by considering its classification within the coding scheme.

  13. Modeling the Scattering Polarization of the Hydrogen Ly-alpha Line Observed by CLASP in a Filament Channel

    NASA Technical Reports Server (NTRS)

    Stepan, J.; Trujillo Bueno, J.; Gunar, S.; del Pino Aleman, T.; Heinzel, P.; Kano, R.; Ishikawa, R.; Narukage, M.; Bando, T.; Winebarger, Amy; Kobayashi, K.; Auchere, F.

    2016-01-01

    The 400 arcsec spectrograph slit of CLASP crossed predominantly quiet regions of the solar chromosphere, from the limb towards the solar disk center. Interestingly, in the CLASP slit-jaw images and in the SDO images of the He I line at 304 A, we can identify a filament channel (FC) extending over more than 60 arcsec crossing the spectrograph slit. In order to interpret the peculiar spatial variation of the Q/1 and U/1 signals observed by CLASP in the hydrogen Ly-alpha line (1216 A) and in the Si Ill line (1206 A) in such a filament channel, it is necessary to perform multi-dimensional radiative transfer modeling. In this contribution, we show the first results of the two-dimensional calculations we are carrying out in given filament models, with the aim of determining the filament thermal and magnetic structure by comparing the theoretical and the observed polarization signals.

  14. High Dispersion Line Profile Studies of TW HYA and Other Pre-Main Sequence Stars

    NASA Astrophysics Data System (ADS)

    Linsky, Jeffrey L.

    1984-07-01

    We propose to extend our study of line profiles in T Tauri stars by obtaining a 16 hour SWP-HI spectrum of TW Hya and 6-8 hour LWP-HI spectra of TW Hya, AK Sco, CoD -35 10525 and CoD -33 10685. High dispersion spectra of pre-main sequence (PMS) stars provide unique information on line widths, shifts, and asymmetries, as well as evidence for mass outflow, circumstellar absorption, and diagnostics for the temperature structure of the outer atmosphere layers of these complex yet incredibly important objects. We have previously obtained and studied line profiles in RU Lupi and the prototype star T Tau. RU Lupi has line profiles that are dominated by the wind expansion, for example the MgII and FeII multiplet UV1 profiles are unique in that they have a classical P Cygni shape, whereas T Tau has more symmetric emission profiles indicative of a chromosphere and hotter layers not dominated by expansion. TW Hya is different from these two previously studied stars in that it may be the brightest known example of a post-T Tauri star, and hence less active and older than the other PMS stars. We intend to compare its line profiles with those of RU Lupi and T Tauri in order to understand the differences in the non-thermal mass motions, wind expansion, and thermal structures of these three very different T Tau stars. The requested LWPHI spectra are to obtain MgII and FeII multiplet UV1. profiles of 4 different T Tauri objects so as to infer the expansion and thermal structure in their chromospheric layers.

  15. X-RAY EMISSION LINE PROFILES FROM WIND CLUMP BOW SHOCKS IN MASSIVE STARS

    SciTech Connect

    Ignace, R.; Waldron, W. L.; Cassinelli, J. P.; Burke, A. E. E-mail: wwaldron@satx.rr.com E-mail: burke.alexander@gmail.com

    2012-05-01

    The consequences of structured flows continue to be a pressing topic in relating spectral data to physical processes occurring in massive star winds. In a preceding paper, our group reported on hydrodynamic simulations of hypersonic flow past a rigid spherical clump to explore the structure of bow shocks that can form around wind clumps. Here we report on profiles of emission lines that arise from such bow shock morphologies. To compute emission line profiles, we adopt a two-component flow structure of wind and clumps using two 'beta' velocity laws. While individual bow shocks tend to generate double-horned emission line profiles, a group of bow shocks can lead to line profiles with a range of shapes with blueshifted peak emission that depends on the degree of X-ray photoabsorption by the interclump wind medium, the number of clump structures in the flow, and the radial distribution of the clumps. Using the two beta law prescription, the theoretical emission measure and temperature distribution throughout the wind can be derived. The emission measure tends to be power law, and the temperature distribution is broad in terms of wind velocity. Although restricted to the case of adiabatic cooling, our models highlight the influence of bow shock effects for hot plasma temperature and emission measure distributions in stellar winds and their impact on X-ray line profile shapes. Previous models have focused on geometrical considerations of the clumps and their distribution in the wind. Our results represent the first time that the temperature distribution of wind clump structures are explicitly and self-consistently accounted for in modeling X-ray line profile shapes for massive stars.

  16. New observations with the HST Goddard High Resolution Spectrograph of the low-redshift Lyman-Alpha clouds in the 3C 273 line of sight

    NASA Technical Reports Server (NTRS)

    Weymann, Ray; Rauch, Michael; Williams, Robert; Morris, Simon; Heap, Sally

    1995-01-01

    We presenty spectra of 3C 273 between 1216 and 1250 A obtained in the (pre-COSTAR (Corrective Optics Space Telescope Axial Replacement instrument)) configuration of the Goddard High Resolution Spectrograph (GHRS) taken with the G160M grating with a resolution approximately = 20 km/s. The two strong Ly alpha lines at velocities of approximately 1000 and approximately 1600 km/s are well fitted with Voigt profiles and yield column densities, Doppler parameters and redshifts of log N(H I)=14.19 +/- 0.04 V(sub Dop)=40.7 +/- 3.0 km/s, V = 1012.4 +/- 2.0 km/s, and log N(H I)=14.22 +/- 0.07, V(sub Dop)=34.2 +/- 3.3 km/s and V = 1582.0 +/- 2.0 km/s, respectively. Motivated by the initial announcement by Williams and Schommer of detectable H alpha emission associated with the approximately 1600 km/s cloud, we discuss the difficulty of finding models which can account for emission of that magnitude given the observed neutral hydrogen column density, though a recent reobservation by these authors has shown the initial detection to be spurious. The C/H abundance ratio is probably less than about one-fourth of the solar abundance in these clouds, although this result is very uncertain and model dependent.

  17. New observations with the HST Goddard High Resolution Spectrograph of the low-redshift Lyman-Alpha clouds in the 3C 273 line of sight

    NASA Technical Reports Server (NTRS)

    Weymann, Ray; Rauch, Michael; Williams, Robert; Morris, Simon; Heap, Sally

    1995-01-01

    We presenty spectra of 3C 273 between 1216 and 1250 A obtained in the (pre-COSTAR (Corrective Optics Space Telescope Axial Replacement instrument)) configuration of the Goddard High Resolution Spectrograph (GHRS) taken with the G160M grating with a resolution approximately = 20 km/s. The two strong Ly alpha lines at velocities of approximately 1000 and approximately 1600 km/s are well fitted with Voigt profiles and yield column densities, Doppler parameters and redshifts of log N(H I)=14.19 +/- 0.04 V(sub Dop)=40.7 +/- 3.0 km/s, V = 1012.4 +/- 2.0 km/s, and log N(H I)=14.22 +/- 0.07, V(sub Dop)=34.2 +/- 3.3 km/s and V = 1582.0 +/- 2.0 km/s, respectively. Motivated by the initial announcement by Williams and Schommer of detectable H alpha emission associated with the approximately 1600 km/s cloud, we discuss the difficulty of finding models which can account for emission of that magnitude given the observed neutral hydrogen column density, though a recent reobservation by these authors has shown the initial detection to be spurious. The C/H abundance ratio is probably less than about one-fourth of the solar abundance in these clouds, although this result is very uncertain and model dependent.

  18. ON POSSIBLE VARIATIONS OF BASAL Ca II K CHROMOSPHERIC LINE PROFILES WITH THE SOLAR CYCLE

    SciTech Connect

    Pevtsov, Alexei A.; Uitenbroek, Han; Bertello, Luca E-mail: huitenbroek@nso.edu

    2013-04-10

    We use daily observations of the Ca II K line profiles of the Sun-as-a-star taken with the Integrated Sunlight Spectrometer from 2006 December through 2011 July to deconvolve the contributions from the quiet (basal) chromosphere and with magnetic network/plage areas. The 0.5 A emission index computed from basal profiles shows a significantly reduced modulation (as compared with one derived from the observed profiles) corresponding to the Sun's rotation. For basal contribution of the Ca II K line, the peak in power spectrum corresponding to solar rotation is broad and not well defined. Power spectra for the plage contribution show two narrow well-defined peaks corresponding to solar rotation at two distinct latitudes, in agreement with the latitudinal distribution of activity on the Sun at the end of Cycle 23 and beginning of Cycle 24. We use the lack of a signature of solar rotation in the basal (quiet Sun) component as an indication of a successful removal of the active Sun (plage) component. Even though the contribution from solar activity is removed from the basal line profiles, we find a weak dependency of intensity in the line core (K3) of basal profiles with the phase of the solar cycle. Such dependency could be the result of changes in thermal properties of basal chromosphere with the solar cycle. As an alternative explanation, we also discuss a possibility that the basal component does not change with the phase of the solar cycle.

  19. Bioisosteric phentolamine analogs as selective human alpha(2)- versus alpha(1)-adrenoceptor ligands.

    PubMed

    Bavadekar, Supriya A; Hong, Seoung-Soo; Lee, Sang-Ii; Miller, Duane D; Feller, Dennis R

    2008-08-20

    Phentolamine is known to act as a competitive, non-subtype-selective alpha-adrenoceptor antagonist. In an attempt to improve alpha(2)- versus alpha(1)-adrenoceptor selectivity and alpha(2)-adrenoceptor subtype-selectivity, two new chemical series of bioisosteric phentolamine analogs were prepared and evaluated. These compounds were evaluated for binding affinities on alpha(1)- (alpha(1A)-, alpha(1B)-, alpha(1D)-) and alpha(2)- (alpha(2A)-, alpha(2B)-, alpha(2C)-) adrenoceptor subtypes that had been stably expressed in human embryonic kidney and Chinese hamster ovary cell lines, respectively. Methylation of the phenolic hydroxy group and replacement of the 4-methyl group of phentolamine with varying lipophilic substituents yielded bioisosteric analogs selective for the alpha(2)- versus alpha(1)-adrenoceptors. Within the alpha(2)-adrenoceptors, these analogs bound with higher affinity at the alpha(2A)- and alpha(2C)-subtypes as compared to the alpha(2B)-subtype. In particular, the t-butyl analog was found to be the most selective, its binding at the alpha(2C)-adrenoceptor (Ki=3.6 nM) being 37- to 173-fold higher than that at the alpha(1)-adrenoceptors, and around 2- and 19-fold higher than at the alpha(2A)- and alpha(2B)-adrenoceptors, respectively. Data from luciferase reporter gene assays confirmed the functional antagonist activities of selected compounds from the bioisosteric series on human alpha(1A)- and alpha(2C)-adrenoceptors. Thus, the results with these bioisosteric analogs of phentolamine provide a lead to the rational design of potent and selective alpha(2)-adrenoceptor ligands that may be useful in improving the therapeutic profile of this drug class for human disorders.

  20. Experimental measurements of selenium x-ray laser spectral line profiles

    SciTech Connect

    Koch, J.A.; MacGowan, B.J.; Da Silva, L.B.; Matthews, D.L.; London, R.A.; Lee, R.W.; Mrowka, S.; Underwood, J.H.; Batson, P.J.

    1993-03-01

    The authors discuss their recent measurements of the spectral width of the 206.38 {Angstrom} x-ray laser transition in Ne-like Se. These measurements used a high-resolution grating spectrometer and were performed over a wide range of laser amplifier lengths. The data have enabled them to extrapolate the intrinsic line width and to observe the effects of gain-narrowing and saturation on the line profile. They find an intrinsic width which is 1.4 times the Doppler width, they observe gain-narrowing in intermediate length amplifiers, and they observe no re-broadening in long, saturated amplifiers. These results suggest that collisional line-broadening has a significant effect on the line profile and saturation behavior of this laser.

  1. An Explanation of Remarkable Emission-line Profiles in Post-flare Coronal Rain

    NASA Astrophysics Data System (ADS)

    Lacatus, Daniela A.; Judge, Philip G.; Donea, Alina

    2017-06-01

    We study broad redshifted emission in chromospheric and transition region lines that appears to correspond to a form of post-flare coronal rain. Profiles of Mg ii, C ii, and Si iv lines were obtained using IRIS before, during, and after the X2.1 flare of 2015 March 11 (SOL2015-03-11T16:22). We analyze the profiles of the five transitions of Mg ii (the 3p-3s h and k transitions, and three lines belonging to the 3d-3p transitions). We use analytical methods to understand the unusual profiles, together with higher-resolution observational data of similar phenomena observed by Jing et al. The peculiar line ratios indicate anisotropic emission from the strands that have cross-strand line center optical depths (k line) of between 1 and 10. The lines are broadened by unresolved Alfvénic motions whose energy exceeds the radiation losses in the Mg ii lines by an order of magnitude. The decay of the line widths is accompanied by a decay in the brightness, suggesting a causal connection. If the plasma is ≲99% ionized, ion-neutral collisions can account for the dissipation; otherwise, a dynamical process seems necessary. Our work implies that the motions are initiated during the impulsive phase, to be dissipated as radiation over a period of an hour, predominantly by strong chromospheric lines. The coronal “rain” we observe is far more turbulent than most earlier reports have indicated, with implications for plasma heating mechanisms.

  2. Characterization of the glycosylation profile of the human breast cancer cell line, MDA-231, and a bone colonizing variant.

    PubMed

    Carcel-Trullols, Jaime; Stanley, Joseph S; Saha, Rinku; Shaaf, Saeid; Bendre, Manali S; Monzavi-Karbassi, Behjatolah; Suva, Larry J; Kieber-Emmons, Thomas

    2006-05-01

    The mechanisms that guide organ-specific metastases are not fully established. The aberrant expression of carbohydrates may play a fundamental role in defining the molecular mechanisms for metastases to distant organs and facilitate positive interactions within the target organ. The purpose of the present study was to determine the glycomic profile of a variant of the MDA-MB-231 breast cancer cell line that colonizes the bone and to ascribe mechanistic functions mediated by carbohydrates that might correlate with clinical bone metastases. The carbohydrate expression profiles of osteolytic MDA-MET breast cancer cells and non-osteolytic parental MDA-MB-231 cells were determined. MDA-MET cells were derived from MDA-MB-231 cells by in vivo selection of metastatic bone lesions following intracardiac inoculation. The two related breast cancer cell lines expressed distinct carbohydrate profiles; MDA-MET cells displayed an increased expression of alpha (2,6) linked sialic acid, N-beta1-6 GlcNAc, and sialylated Lewis-A antigen, and decreased expression of Galbeta1,3GalNAc as detected using a combination of lectins and anti-carbohydrate antibodies. Microarray analysis demonstrated an increased expression of glycosyltransferase genes, correlative for the distinct glycomic phenotype. The altered glycomic phenotypes of MDA-MET cells include effects on the differential binding to bone marrow endothelial cells, enhanced ECM binding and an increase in invasive potential. These data suggest that the glycomic phenotype of MDA-MET cells is associated with a select set of accumulated functions that collectively impact on the bone metastases and bone colonization capacity of breast cancer cells.

  3. Procedure for analyzing the x-ray line profiles of disordered carbons

    SciTech Connect

    Henry, L.G.; Bragg, R.H.; Bose, S.

    1981-12-01

    A systematic procedure to correct for various distortions in the broad x-ray line profiles of glass-like carbons (GC) is described. The profile is first corrected for distortions due to low specimen absorption, secondly for incoherent (Compton) scattering, and then strong small angle scattering. The resulting profile is then multiplied by the appropriate trigonometric (Lorentz and polarization) factors. Finally, correction is made for the variation of the atomic scattering factor across the broad peaks. Two examples of the GC heat treatment at 1000/sup 0/C and 2700/sup 0/C have been used to illustrate the outcome of the corrections. 8 figures.

  4. STRONG FIELD EFFECTS ON EMISSION LINE PROFILES: KERR BLACK HOLES AND WARPED ACCRETION DISKS

    SciTech Connect

    Wang Yan; Li Xiangdong

    2012-01-10

    If an accretion disk around a black hole is illuminated by hard X-rays from non-thermal coronae, fluorescent iron lines will be emitted from the inner region of the accretion disk. The emission line profiles will show a variety of strong field effects, which may be used as a probe of the spin parameter of the black hole and the structure of the accretion disk. In this paper, we generalize the previous relativistic line profile models by including both the black hole spinning effects and the non-axisymmetries of warped accretion disks. Our results show different features from the conventional calculations for either a flat disk around a Kerr black hole or a warped disk around a Schwarzschild black hole by presenting, at the same time, multiple peaks, rather long red tails, and time variations of line profiles with the precession of the disk. We show disk images as seen by a distant observer, which are distorted by the strong gravity. Although we are primarily concerned with the iron K-shell lines in this paper, the calculation is general and is valid for any emission lines produced from a warped accretion disk around a black hole.

  5. A new scheme for multidimensional line transfer. II - ETLA method in one dimension with application to iron K-alpha lines

    NASA Technical Reports Server (NTRS)

    Castor, John I.; Dykema, Pieter G.; Klein, Richard I.

    1992-01-01

    The 1D version of the radiation hydrodynamics computer code ALTAIR is discribed. It is an implementation of the equivalent two-level atom method, and also incorporates a variety of other iterative techniques to achieve a fast, accurate solution of the problem of coupled atomic kinetics and radiative transfer. All the techniques are described in sufficient detail to enable their use by others. The application of the program is illustrated by a set of calculations of the iron X-ray emission spectrum from intercloud hot gas that may exist in the broad-line region of active galactic nuclei. These calculations demonstrate that such spectra may be a rich load to mine for information about the hot gas in AGNs, and also that the concept of 'the iron K-alpha line' inadequately depicts the spectrum.

  6. Beta3 subunits promote expression and nicotine-induced up-regulation of human nicotinic alpha6* nicotinic acetylcholine receptors expressed in transfected cell lines.

    PubMed

    Tumkosit, Prem; Kuryatov, Alexander; Luo, Jie; Lindstrom, Jon

    2006-10-01

    Nicotinic acetylcholine receptors (AChRs) containing alpha6 subunits are typically found at aminergic nerve endings where they play important roles in nicotine addiction and Parkinson's disease. alpha6* AChRs usually contain beta3 subunits. beta3 subunits are presumed to assemble only in the accessory subunit position within AChRs where they do not participate in forming acetylcholine binding sites. Assembly of subunits in the accessory position may be a critical final step in assembly of mature AChRs. Human alpha6 AChRs subtypes were permanently transfected into human tsA201 human embryonic kidney (HEK) cell lines. alpha6beta2beta3 and alpha6beta4beta3 cell lines were found to express much larger amounts of AChRs and were more sensitive to nicotine-induced increase in the amount of AChRs than were alpha6beta2 or alpha6beta4 cell lines. The increased sensitivity to nicotine-induced up-regulation was due not to a beta3-induced increase in affinity for nicotine but probably to a direct effect on assembly of AChR subunits. HEK cells express only a small amount of mature alpha6beta2 AChRs, but many of these subunits are on the cell surface. This contrasts with Xenopus laevis oocytes, which express a large amount of incorrectly assembled alpha6beta2 subunits that bind cholinergic ligands but form large amorphous intracellular aggregates. Monoclonal antibodies (mAbs) were made to the alpha6 and beta3 subunits to aid in the characterization of these AChRs. The alpha6 mAbs bind to epitopes C-terminal of the extracellular domain. These data demonstrate that both cell type and the accessory subunit beta3 can play important roles in alpha6* AChR expression, stability, and up-regulation by nicotine.

  7. X-ray bumps, iron K-alpha lines, and X-ray suppression by obscuring tori in Seyfert galaxies

    NASA Technical Reports Server (NTRS)

    Krolik, Julian H.; Madau, Piero; Zycki, Piotr T.

    1994-01-01

    We investigate the X-ray spectral properties of unobscured type 1 and obscured type 2 Seyferts as predicted by the unified Seyfert scheme. We consider the reprocessing of X-ray photons by photoelectric absorption, iron fluorescence, and Compton downscattering in the obscuring tori surrounding these active nuclei, and compute by Monte Carlo methods the reprocessed spectra as a function of the viewing angle. Depending on the optical depth and shape of the torus, and on the viewing angle, the X-ray flux can be suppressed by substantial factors when our line of sight is obscured. We show that an immediate consequence of the existence of an obscuring thick torus is the production in the spectra of type 1 Seyfert galaxies of a bump in the continuum above 10-20 keV and an Fe K-alpha line with significant equivalent width. In those type 2 Seyferts for which the hard X-ray spectrum has been substantially suppressed, the equivalent width of the Fe K-alpha line in the transmitted spectrum can be very large.

  8. On the statistical uncertainties associated with line profile fitting. [in astronomy

    NASA Technical Reports Server (NTRS)

    Landman, D. A.; Roussel-Dupre, R.; Tanigawa, G.

    1982-01-01

    The paper considers the statistical uncertainties in the best-fit parameters associated with the fitting of observational data by model line profiles of specific form. The parameters involved are amplitude, center, and width. A general procedure is described for any profile type of parametric form. The case of Gaussian profiles is treated in detail, and numerical solutions are presented for equally spaced data of equal weight. Approximate analytical solutions are derived that give good general agreement with the numerical solutions over the whole range of interest. Approximate solutions are also obtained for the case of Lorentzian profiles. It is shown that the Lorentzian results can be used in conjunction with the Gaussian results to estimate the corresponding parameter uncertainties in the case of the general Voigt profile.

  9. Supernova Resonance-scattering Line Profiles in the Absence of a Photosphere

    NASA Astrophysics Data System (ADS)

    Friesen, Brian; Baron, E.; Branch, David; Chen, Bin; Parrent, Jerod T.; Thomas, R. C.

    2012-11-01

    In supernova (SN) spectroscopy relatively little attention has been given to the properties of optically thick spectral lines in epochs following the photosphere's recession. Most treatments and analyses of post-photospheric optical spectra of SNe assume that forbidden-line emission comprises most if not all spectral features. However, evidence exists that suggests that some spectra exhibit line profiles formed via optically thick resonance-scattering even months or years after the SN explosion. To explore this possibility, we present a geometrical approach to SN spectrum formation based on the "Elementary Supernova" model, wherein we investigate the characteristics of resonance-scattering in optically thick lines while replacing the photosphere with a transparent central core emitting non-blackbody continuum radiation, akin to the optical continuum provided by decaying {}^{56}{\\protect {Co}} formed during the explosion. We develop the mathematical framework necessary for solving the radiative transfer equation under these conditions and calculate spectra for both isolated and blended lines. Our comparisons with analogous results from the Elementary Supernova code SYNOW reveal several marked differences in line formation. Most notably, resonance lines in these conditions form P Cygni-like profiles, but the emission peaks and absorption troughs shift redward and blueward, respectively, from the line's rest wavelength by a significant amount, despite the spherically symmetric distribution of the line optical depth in the ejecta. These properties and others that we find in this work could lead to misidentification of lines or misattribution of properties of line-forming material at post-photospheric times in SN optical spectra.

  10. SUPERNOVA RESONANCE-SCATTERING LINE PROFILES IN THE ABSENCE OF A PHOTOSPHERE

    SciTech Connect

    Friesen, Brian; Baron, E.; Branch, David; Chen Bin; Parrent, Jerod T.; Thomas, R. C.

    2012-11-15

    In supernova (SN) spectroscopy relatively little attention has been given to the properties of optically thick spectral lines in epochs following the photosphere's recession. Most treatments and analyses of post-photospheric optical spectra of SNe assume that forbidden-line emission comprises most if not all spectral features. However, evidence exists that suggests that some spectra exhibit line profiles formed via optically thick resonance-scattering even months or years after the SN explosion. To explore this possibility, we present a geometrical approach to SN spectrum formation based on the 'Elementary Supernova' model, wherein we investigate the characteristics of resonance-scattering in optically thick lines while replacing the photosphere with a transparent central core emitting non-blackbody continuum radiation, akin to the optical continuum provided by decaying {sup 56}Co formed during the explosion. We develop the mathematical framework necessary for solving the radiative transfer equation under these conditions and calculate spectra for both isolated and blended lines. Our comparisons with analogous results from the Elementary Supernova code SYNOW reveal several marked differences in line formation. Most notably, resonance lines in these conditions form P Cygni-like profiles, but the emission peaks and absorption troughs shift redward and blueward, respectively, from the line's rest wavelength by a significant amount, despite the spherically symmetric distribution of the line optical depth in the ejecta. These properties and others that we find in this work could lead to misidentification of lines or misattribution of properties of line-forming material at post-photospheric times in SN optical spectra.

  11. Spectrophotometry of H-Alpha Emission-Line Stars in the LMC

    NASA Astrophysics Data System (ADS)

    Bohannan, Bruce

    As part of a study of the bright emission-line stars in the Large Magellanic Cloud, ultraviolet spectrophotometry from IUE will be combined with narrow-band visible photometry to measure effective temperatures and gravities of the most pathological stars in the sample through comparison of observed fluxes with Kurucz model atmospheres. IUE spectrophotometry is required because the spectra of early-type emission-line stars are often so complex that visible light absorption-line strengths can be a potentially misleading indicator of effective temperature. Indeed, some of these stars have such strong emission-lines from their dense, extended atmospheres that they have no lines arising from the photosphere. The overall goal of this research is to locate the sample of LMC emission-line stars in the Hertzsprung-Russell diagram to gain an understanding of the paths that massive stars take in evolving from main sequence 0-type stars to Wolf-Rayet stars.

  12. Gene expression profiling and differentiation assessment in primary human hepatocyte cultures, established hepatoma cell lines, and human liver tissues

    SciTech Connect

    Olsavsky, Katy M.; Page, Jeanine L.; Johnson, Mary C.; Zarbl, Helmut; Strom, Stephen C.; Omiecinski, Curtis J. . E-mail: cjo10@psu.edu

    2007-07-01

    Frequently, primary hepatocytes are used as an in vitro model for the liver in vivo. However, the culture conditions reported vary considerably, with associated variability in performance. In this study, we characterized the differentiation character of primary human hepatocytes cultured using a highly defined, serum-free two-dimensional sandwich system, one that configures hepatocytes with collagen I as the substratum together with a dilute extracellular matrix (Matrigel{sup TM}) overlay combined with a defined serum-free medium containing nanomolar levels of dexamethasone. Gap junctional communication, indicated by immunochemical detection of connexin 32 protein, was markedly enhanced in hepatocytes cultured in the Matrigel sandwich configuration. Whole genome expression profiling enabled direct comparison of liver tissues to hepatocytes and to the hepatoma-derived cell lines, HepG2 and Huh7. PANTHER database analyses were used to identify biological processes that were comparatively over-represented among probe sets expressed in the in vitro systems. The robustness of the primary hepatocyte cultures was reflected by the extent of unchanged expression character when compared directly to liver, with more than 77% of the probe sets unchanged in each of the over-represented categories, representing such genes as C/EBP{alpha}, HNF4{alpha}, CYP2D6, and ABCB1. In contrast, HepG2 and Huh7 cells were unchanged from the liver tissues for fewer than 48% and 55% of these probe sets, respectively. Further, hierarchical clustering of the hepatocytes, but not the cell lines, shifted from donor-specific to treatment-specific when the probe sets were filtered to focus on phenobarbital-inducible genes, indicative of the highly differentiated nature of the hepatocytes when cultured in a highly defined two-dimensional sandwich system.

  13. Effects of chemotherapeutic agents on alpha-fetoprotein secretion and growth of human hepatoma cell lines in vitro.

    PubMed Central

    Muraoka, A.; Tokiwa, T.; Sato, J.

    1989-01-01

    The effects of various chemotherapeutic agents on alpha-fetoprotein (AFP) secretion and growth of human hepatocellular carcinoma and hepatoblastoma cell lines were investigated in vitro. It was found that there was a high correlation between hepatoma cell number and AFP secretion after treatment and that the amount of AFP secreted per cell per 72 h was not affected with therapeutically achievable concentrations. These results suggest that serum AFP level in patients with hepatomas does not correlate with the size of whole tumour but with that of viable tumour mass, and that AFP-secreting capacity of tumour cells in the mass is kept unchanged after chemotherapy. PMID:2469455

  14. Estimation of the Lyman-{alpha} line intensity in a lithium-based discharge-produced plasma source

    SciTech Connect

    Masnavi, Majid; Nakajima, Mitsuo; Hotta, Eiki; Horioka, Kazuhiko

    2008-01-01

    Extreme ultraviolet (EUV) discharge-based lamps for EUV lithography need to generate extremely high power in the narrow spectrum band of 13.5{+-}0.135 nm. A simplified time-dependent collisional-radiative model and radiative transfer solution were utilized to investigate the wavelength-integrated Lyman-{alpha} line light outputs in a hydrogen-like lithium ion. The study reveals in particular that a steady-state or magnetically confined lithium plasma radiates in the desired spectrum band not less than 1 kW in 2{pi} sr even at an ion density region as low as 10{sup 17} cm{sup -3}.

  15. Variability of Solar UV Irradiance Related to Bright Magnetic Features Observed in Call K-Line: Relationship between Lyman alpha and K-line Report for UARS funding agency

    NASA Technical Reports Server (NTRS)

    Zirin, Harold; Cameron, Robert

    1999-01-01

    In this report we comment on the relationship between the Lyman alpha and Calcium K-line emission from the Sun. We firstly examine resolved Lyman alpha images (from TRACE) and resolved K-line images. We find that the Lyman alpha emission is consistent with a linear dependence on the K-line emission. As this is in conflict with the analysis of Johannesson et al.(1995, 1998) we proceed by comparing the disk integrated Lyman alpha flux as a function of ratio between the disk integrated Mg II core and wing fluxes (Johannesson et al (1998) having previously found a linear dependence between this index and the BBSO K-line index). We find that a reasonably good fit can be obtained, however note the discrepancies which lead Johannesson et al to consider the square root relationship. We suggest an alternative interpretation of the discrepancy.

  16. Molecular profiling indicates orthotopic xenograft of glioma cell lines simulate a subclass of human glioblastoma.

    PubMed

    Shankavaram, Uma T; Bredel, Markus; Burgan, William E; Carter, Donna; Tofilon, Philip; Camphausen, Kevin

    2012-03-01

    Cell line models have been widely used to investigate glioblastoma multiforme (GBM) pathobiology and in the development of targeted therapies. However, GBM tumours are molecularly heterogeneous and how cell lines can best model that diversity is unknown. In this report, we investigated gene expression profiles of three preclinical growth models of glioma cell lines, in vitro and in vivo as subcutaneous and intracerebral xenografts to examine which cell line model most resembles the clinical samples. Whole genome DNA microarrays were used to profile gene expression in a collection of 25 high-grade glioblastomas, and comparisons were made to profiles of cell lines under three different growth models. Hierarchical clustering revealed three molecular subtypes of the glioblastoma patient samples. Supervised learning algorithm, trained on glioma subtypes predicted the intracerebral cell line model with one glioma subtype (r = 0.68; 95% bootstrap CI -0.41, 0.46). Survival analysis of enriched gene sets (P < 0.05) revealed 19 biological categories (146 genes) belonging to neuronal, signal transduction, apoptosis- and glutamate-mediated neurotransmitter activation signals that are associated with poor prognosis in this glioma subclass. We validated the expression profiles of these gene categories in an independent cohort of patients from 'The Cancer Genome Atlas' project (r = 0.62, 95% bootstrap CI: -0.42, 0.43). We then used these data to select and inhibit a novel target (glutamate receptor) and showed that LY341595, a glutamate receptor specific antagonist, could prolong survival in intracerebral tumour-implanted mice in combination with irradiation, providing an in vivo cell line system of preclinical studies. © 2012 Foundation for Cellular and Molecular Medicine/Blackwell Publishing Ltd.

  17. Comparative quantification of pharmacodynamic parameters of chiral compounds (RRR- vs. all-rac-alpha tocopherol) by global gene expression profiling.

    PubMed

    Muller, Patrick Y; Netscher, Thomas; Frank, Jan; Stoecklin, Elisabeth; Rimbach, Gerald; Barella, Luca

    2005-07-01

    Pharmacologically active compounds (e.g. from the groups of pharmaceutical drugs, cofactors or vitamins) often consist of two or more stereoisomers (enantiomers or diastereoisomers) which may differ in their pharmacodynamic/kinetic, toxicological and biological properties. A well-known example is vitamin E which is predominantly administered as two different forms, one derived from natural sources (mainly soybeans), and one from production by chemical total-synthesis. While vitamin E from natural sources occurs as a single stereoisomer (RRR-alpha-tocopherol), synthetic vitamin E (all-rac-alpha-tocopherol) is an equimolar mixture of eight stereoisomers. Based on a number of animal studies it has been suggested that the biological potency of natural-source vitamin E is 1.36 greater compared to its counterpart produced by chemical synthesis. In this study, we have used the Affymetrix GeneChip technology to evaluate the feasibility of a new bio-assay where the gene regulatory activities of RRR-alpha-tocopherol and all-rac-alpha-tocopherol were quantified and compared on the genome-wide level. For this purpose, HepG2 cells were supplemented with increasing amounts of RRR- or all-rac-alpha-tocopherol for 7 days. Genes showing a dose-related induction/repression were identified by global gene expression profiling. Our findings show that RRR- and all-rac-alpha-tocopherol share an identical transcriptional activity, i.e. induce/repress the expression of the same set of genes. Based on the transcriptional dose-response data, EC50 and IC50 values were determined for each of these genes. The feasibility of calculating a "transcriptional potency factor" of RRR- vs. all-rac-e-tocopherol was evaluated by dividing the EC50/IC50 of RRR-alpha-tocopherol by the corresponding EC50/IC50 of all-rac-alpha-tocopherol for every of the vitamin E responsive genes. Using this approach we have calculated 215 single biopotency ratios. Subsequently, the mean of all potency ratios was found to be

  18. Pulsational mode-typing in line profile variables. I - Four Beta Cephei stars

    NASA Technical Reports Server (NTRS)

    Campos, A. J.; Smith, M. A.

    1980-01-01

    The detailed variations of line profiles in the Beta Cephei-type variable stars Gamma Pegasi, Beta Cephei, Delta Ceti and Sigma Scorpii are modeled throughout their pulsation cycles in order to classify the dominant pulsation mode as radial or nonradial. High-dispersion Reticon observations of the variables were obtained for the Si III line at 4567 A, and line profiles broadened by radial or nonradial pulsations, rotation and radial-tangential macroturbulence were calculated based on a model atmosphere. It is found that only a radial pulsation mode can reproduce the radial velocity amplitude, changes in line asymmetry and uniform line width observed in all four stars. Results are in agreement with the color-to-light arguments of Stamford and Watson (1978), and suggest that radial pulsation plays the dominant role in the observed variations in most Beta Cephei stars. Evidence for shocks or moving shells is also found in visual line data for Sigma Scorpii and an ultraviolet line of Beta Cephei, together with evidence of smooth, secular period changes in Beta Cephei and Delta Ceti.

  19. Observations and analysis of O(1D) and NH2 line profiles for the coma of comet P/Halley

    NASA Technical Reports Server (NTRS)

    Smyth, William H.; Combi, Michael R.; Roesler, Fred L.; Scherb, Frank

    1995-01-01

    A set of high-resolution Fabry-Perot measurements of the coma of comet P/Halley was acquired in the (O I) 6300 A and NH2 6298.62 A emission lines. These high-resolution measurements provide the first optical observations capable of studying directly the photochemical kinetics and dynamic outflow of the coma. The observations were analyzed by a Monte Carlo Particle Trajectory Model. The agreement of the model and observed line profiles was excellent and verified the underlying dynamics, exothermic photodissociative chemistry, and collisional thermalization in the coma. The somewhat wider intrinsic line profile width for the O(1D) emission in 1986 January compared to 1986 May, is, for example, produced by the larger outflow speeds and gas temperatures nearer perihelion in January. The January O(1D) profile, which is wider than the January NH2 profile, is indicative of the photochemical kinetics in the dissociation of the parent molecules H2O and OH in the coma. The absolute calibration of the observations in 1986 January allowed the production rates for H2O and the NH2-parent molecules to be determined. The average daily water production rates derived from the O(1D) emission data for January 16 and 17 are presented. These very large water production rates are consistent with the extrapolated (and 7.6 day time variable) water production rates determined from the analysis of lower spectral resolution observations for O(1D) and H-alpha emissions that covered the time period up to January 13. The large production rates on January 16 and 17 establish that the maximum water production rate for comet Halley accurred pre-perihelion in January. Implications drawn from comparison with 18 cm radio emission data in January suggest that the peak water production rate was even larger. The average production rate for NH3 determined from the NH2 emission data for January 17 was (1.48 +/- 0.10) x 10(exp 28) molecules/s, yielding an NH3/H2O production rate ratio of 0.55%.

  20. Observations and analysis of O(1D) and NH2 line profiles for the coma of comet P/Halley

    NASA Technical Reports Server (NTRS)

    Smyth, William H.; Combi, Michael R.; Roesler, Fred L.; Scherb, Frank

    1995-01-01

    A set of high-resolution Fabry-Perot measurements of the coma of comet P/Halley was acquired in the (O I) 6300 A and NH2 6298.62 A emission lines. These high-resolution measurements provide the first optical observations capable of studying directly the photochemical kinetics and dynamic outflow of the coma. The observations were analyzed by a Monte Carlo Particle Trajectory Model. The agreement of the model and observed line profiles was excellent and verified the underlying dynamics, exothermic photodissociative chemistry, and collisional thermalization in the coma. The somewhat wider intrinsic line profile width for the O(1D) emission in 1986 January compared to 1986 May, is, for example, produced by the larger outflow speeds and gas temperatures nearer perihelion in January. The January O(1D) profile, which is wider than the January NH2 profile, is indicative of the photochemical kinetics in the dissociation of the parent molecules H2O and OH in the coma. The absolute calibration of the observations in 1986 January allowed the production rates for H2O and the NH2-parent molecules to be determined. The average daily water production rates derived from the O(1D) emission data for January 16 and 17 are presented. These very large water production rates are consistent with the extrapolated (and 7.6 day time variable) water production rates determined from the analysis of lower spectral resolution observations for O(1D) and H-alpha emissions that covered the time period up to January 13. The large production rates on January 16 and 17 establish that the maximum water production rate for comet Halley accurred pre-perihelion in January. Implications drawn from comparison with 18 cm radio emission data in January suggest that the peak water production rate was even larger. The average production rate for NH3 determined from the NH2 emission data for January 17 was (1.48 +/- 0.10) x 10(exp 28) molecules/s, yielding an NH3/H2O production rate ratio of 0.55%.

  1. Thermal profiling for parallel on-line monitoring of biomass growth in miniature stirred bioreactors.

    PubMed

    Gill, N K; Appleton, M; Lye, G J

    2008-09-01

    Recently we have described the design and operation of a miniature bioreactor system in which 4-16 fermentations can be performed (Gill et al., Biochem Eng J 39:164-176, 2008). Here we report on the use of thermal profiling techniques for parallel on-line monitoring of cell growth in these bioreactors based on the natural heat generated by microbial culture. Results show that the integrated heat profile during E. coli TOP10 pQR239 fermentations followed the same pattern as off-line optical density (OD) measurements. The maximum specific growth rates calculated from off-line OD and on-line thermal profiling data were in good agreement, at 0.66+/-0.04 and 0.69+/-0.05 h(-1) respectively. The combination of a parallel miniature bioreactor system with a non-invasive on-line technique for estimation of culture kinetic parameters provides a valuable approach for the rapid optimisation of microbial fermentation processes.

  2. Absorption line profiles in a companion spectrum of a mass losing cool supergiant

    NASA Technical Reports Server (NTRS)

    Rodrigues, Liliya L.; Boehm-Vitense, Erika

    1990-01-01

    Cool star winds can best be observed in resonance absorption lines seen in the spectrum of a hot companion, due to the wind passing in front of the blue star. We calculated absorption line profiles that would be seen in the ultraviolet part of the blue companion spectrum. Line profiles are derived for different radial dependences of the cool star wind and for different orbital phases of the binary. Bowen and Wilson find theoretically that stellar pulsations drive mass loss. We therefore apply our calculations to the Cepheid binary S Muscae which has a B5V companion. We find an upper limit for the Cepheid mass loss of M less than or equal to 7 x 10(exp -10) solar mass per year provided that the stellar wind of the companion does not influence the Cepheid wind at large distances.

  3. On the anomaly of Balmer line profiles of A-type stars. Fundamental binary systems

    NASA Astrophysics Data System (ADS)

    Smalley, B.; Gardiner, R. B.; Kupka, F.; Bessell, M. S.

    2002-11-01

    In previous work, Gardiner et al. (\\cite{GKS99}) found evidence for a discrepancy between the Teff obtained from Balmer lines with that from photometry and fundamental values for A-type stars. An investigation into this anomaly is presented using Balmer line profiles of stars in binary system with fundamental values of both Teff and log g. A revision of the fundamental parameters for binary systems given by Smalley & Dworetsky (\\cite{SD95}) is also presented. The Teff obtained by fitting Hα and Hβ line profiles is compared to the fundamental values and those obtained from uvby photometry. We find that the discrepancy found by Gardiner et al. (\\cite{GKS99}) for stars in the range 7000 K <~ Teff <~ 9000 K is no longer evident. Partly based on DENIS data obtained at the European Southern Observatory.

  4. THE HANLE EFFECT OF THE HYDROGEN Ly{alpha} LINE FOR PROBING THE MAGNETISM OF THE SOLAR TRANSITION REGION

    SciTech Connect

    Trujillo Bueno, Javier; Stepan, JirI; Casini, Roberto E-mail: stepan@iac.es

    2011-09-01

    We present some theoretical predictions concerning the amplitude and magnetic sensitivity of the linear-polarization signals produced by scattering processes in the hydrogen Ly{alpha} line of the solar transition region. To this end, we have calculated the atomic-level polarization (population imbalances and quantum coherences) induced by anisotropic radiation pumping in semiempirical and hydrodynamical models of the solar atmosphere, taking into account radiative transfer and the Hanle effect caused by the presence of organized and random magnetic fields. The line-center amplitudes of the emergent linear-polarization signals are found to vary typically between 0.1% and 1%, depending on the scattering geometry and the strength and orientation of the magnetic field. The results shown here encourage the development of UV polarimeters for sounding rockets and space telescopes with the aim of opening up a diagnostic window for magnetic field measurements in the upper chromosphere and transition region of the Sun.

  5. Hit rates and radiation doses to nuclei of bone lining cells from alpha-particle-emitting radionuclides

    NASA Technical Reports Server (NTRS)

    Polig, E.; Jee, W. S.; Kruglikov, I. L.

    1992-01-01

    Factors relating the local concentration of a bone-seeking alpha-particle emitter to the mean hit rate have been determined for nuclei of bone lining cells using a Monte Carlo procedure. Cell nuclei were approximated by oblate spheroids with dimensions and location taken from a previous histomorphometric study. The Monte Carlo simulation is applicable for planar and diffuse labels at plane or cylindrical bone surfaces. Additionally, the mean nuclear dose per hit, the dose mean per hit, the mean track segment length and its second moment, the percentage of stoppers, and the frequency distribution of the dose have been determined. Some basic features of the hit statistics for bone lining cells have been outlined, and the consequences of existing standards of radiation protection with regard to the hit frequency to cell nuclei are discussed.

  6. Hit rates and radiation doses to nuclei of bone lining cells from alpha-particle-emitting radionuclides

    NASA Technical Reports Server (NTRS)

    Polig, E.; Jee, W. S.; Kruglikov, I. L.

    1992-01-01

    Factors relating the local concentration of a bone-seeking alpha-particle emitter to the mean hit rate have been determined for nuclei of bone lining cells using a Monte Carlo procedure. Cell nuclei were approximated by oblate spheroids with dimensions and location taken from a previous histomorphometric study. The Monte Carlo simulation is applicable for planar and diffuse labels at plane or cylindrical bone surfaces. Additionally, the mean nuclear dose per hit, the dose mean per hit, the mean track segment length and its second moment, the percentage of stoppers, and the frequency distribution of the dose have been determined. Some basic features of the hit statistics for bone lining cells have been outlined, and the consequences of existing standards of radiation protection with regard to the hit frequency to cell nuclei are discussed.

  7. Spectral Line-Shape Model to Replace the Voigt Profile in Spectroscopic Databases

    NASA Astrophysics Data System (ADS)

    Lisak, Daniel; Ngo, Ngoc Hoa; Tran, Ha; Hartmann, Jean-Michel

    2014-06-01

    The standard description of molecular line shapes in spectral databases and radiative transfer codes is based on the Voigt profile. It is well known that its simplified assumptions of absorber free motion and independence of collisional parameters from absorber velocity lead to systematic errors in analysis of experimental spectra, and retrieval of gas concentration. We demonstrate1,2 that the partially correlated quadratic speed-dependent hardcollision profile3. (pCqSDHCP) is a good candidate to replace the Voigt profile in the next generations of spectroscopic databases. This profile takes into account the following physical effects: the Doppler broadening, the pressure broadening and shifting of the line, the velocity-changing collisions, the speed-dependence of pressure broadening and shifting, and correlations between velocity- and phase/state-changing collisions. The speed-dependence of pressure broadening and shifting is incorporated into the pCqSDNGP in the so-called quadratic approximation. The velocity-changing collisions lead to the Dicke narrowing effect; however in many cases correlations between velocityand phase/state-changing collisions may lead to effective reduction of observed Dicke narrowing. The hard-collision model of velocity-changing collisions is also known as the Nelkin-Ghatak model or Rautian model. Applicability of the pCqSDHCP for different molecular systems was tested on calculated and experimental spectra of such molecules as H2, O2, CO2, H2O in a wide span of pressures. For all considered systems, pCqSDHCP is able to describe molecular spectra at least an order of magnitude better than the Voigt profile with all fitted parameters being linear with pressure. In the most cases pCqSDHCP can reproduce the reference spectra down to 0.2% or better, which fulfills the requirements of the most demanding remote-sensing applications. An important advantage of pCqSDHCP is that a fast algorithm for its computation was developedab4,5 and allows

  8. THE Lyα LINE PROFILES OF ULTRALUMINOUS INFRARED GALAXIES: FAST WINDS AND LYMAN CONTINUUM LEAKAGE

    SciTech Connect

    Martin, Crystal L.; Wong, Joseph; Dijkstra, Mark; Henry, Alaina; Soto, Kurt T.; Danforth, Charles W.

    2015-04-10

    We present new Hubble Space Telescope Cosmic Origins Spectrograph far-ultraviolet (far-UV) spectroscopy and Keck Echellete optical spectroscopy of 11 ultraluminous infrared galaxies (ULIRGs), a rare population of local galaxies experiencing massive gas inflows, extreme starbursts, and prominent outflows. We detect Lyα emission from eight ULIRGs and the companion to IRAS09583+4714. In contrast to the P Cygni profiles often seen in galaxy spectra, the Lyα profiles exhibit prominent, blueshifted emission out to Doppler shifts exceeding −1000 km s{sup −1} in three H ii-dominated and two AGN-dominated ULIRGs. To better understand the role of resonance scattering in shaping the Lyα line profiles, we directly compare them to non-resonant emission lines in optical spectra. We find that the line wings are already present in the intrinsic nebular spectra, and scattering merely enhances the wings relative to the line core. The Lyα attenuation (as measured in the COS aperture) ranges from that of the far-UV continuum to over 100 times more. A simple radiative transfer model suggests the Lyα photons escape through cavities which have low column densities of neutral hydrogen and become optically thin to the Lyman continuum in the most advanced mergers. We show that the properties of the highly blueshifted line wings on the Lyα and optical emission-line profiles are consistent with emission from clumps of gas condensing out of a fast, hot wind. The luminosity of the Lyα emission increases nonlinearly with the ULIRG bolometric luminosity and represents about 0.1–1% of the radiative cooling from the hot winds in the H ii-dominated ULIRGs.

  9. Catalog of the H-alpha + N II forbidden-line emission features in the Kepler SNR

    SciTech Connect

    Dodorico, S.; Bandiera, R.; Danziger, J.; Focardi, P.

    1986-06-01

    A deep image of the Kepler SNR has been obtained in the light of H-alpha + N II forbidden-line with the faint object spectrograph and camera (EFOSC) and a CCD detector at the ESO 3.6 m telescope. The visibility of the optically emitting knots of ionized gas has been greatly enhanced by subtraction of the continuum radiation. Features as faint as 2 percent of the night-sky brightness have been identified and a half-shell of emission is clearly revealed. The total H-alpha luminosity of the ionized gas is estimated to be 8.3 x 10 to the 45th photons/s at a distance of 5 kpc implying a mass of ionized hydrogen of about 0.02 solar mass. An automatic searching program has been used to identify and list individual emission features in the continuum-subtracted image. A catalog with accurate celestial positions and approximate fluxes for 64 emission-line knots is given. 13 references.

  10. Expression of platelet membrane glycoproteins and alpha-granule proteins by a human erythroleukemia cell line (HEL).

    PubMed Central

    Tabilio, A; Rosa, J P; Testa, U; Kieffer, N; Nurden, A T; Del Canizo, M C; Breton-Gorius, J; Vainchenker, W

    1984-01-01

    We demonstrate that HEL, a human erythroleukemic cell line, has numerous megakaryocytic markers which were markedly enhanced following the addition of the inducers dimethyl sulfoxide or 12-O-tetradecanoylphorbol-13-acetate to the culture medium. Ultrastructural and cytochemical studies showed: (i) the presence of organelles morphologically resembling the platelet alpha-granules; and (ii) a peroxidase activity with the same characteristics as that specifically found in platelets. The platelet alpha-granule proteins (von Willebrand factor, platelet factor-4 and beta-thromboglobulin) were immunologically detected in the HEL cell cytoplasm and their amounts increased after induction. Of particular interest was the presence of platelet membrane proteins. A monoclonal antibody specific for glycoprotein Ib bound to HEL cells. Platelet membrane glycoproteins IIb and IIIa were identified on intact cells using specific antibodies in a binding assay or in cell lysates using either crossed immunoelectrophoresis or an immunoblotting procedure following SDS-polyacrylamide gel electrophoresis. Most HEL cells also expressed the platelet alloantigen PIA1. All of the platelet membrane proteins were present in higher amounts after induction. Glycophorin A, specific for the erythroid lineage, was also detected on HEL cells. Thus, while confirming the presence of erythroid markers, our studies provide evidence that the HEL cell line also expresses platelet antigens. As such, HEL cells represent a unique system with which to study the biosynthesis of platelet-specific proteins and glycoproteins. Images Fig. 1. Fig. 2. Fig. 3. Fig. 4. Fig. 5. PMID:6201359

  11. Thermonuclear Supernovae: Probing Magnetic Fields by Positrons and Late-time IR Line Profiles

    NASA Astrophysics Data System (ADS)

    Penney, R.; Hoeflich, P.

    2014-11-01

    We show the importance of γ and positron transport for the formation of late-time spectra in Type Ia supernovae (SNe Ia). The goal is to study the imprint of magnetic fields (B) on late-time IR line profiles, particularly the [Fe II] feature at 1.644 μm, which becomes prominent two to three months after the explosion. As a benchmark, we use the explosion of a Chandrasekhar mass (M Ch) white dwarf (WD) and, specifically, a delayed detonation model that can reproduce the light curves and spectra for a Branch-normal SN Ia. We assume WDs with initial magnetic surface fields between 1 and 109 G. We discuss large-scale dipole and small-scale magnetic fields. We show that positron transport effects must be taken into account for the interpretation of emission features starting at about one to two years after maximum light, depending on the size of B. The [Fe II] line profile and its evolution with time can be understood in terms of the overall energy input by radioactive decay and the transition from a γ-ray to a positron-dominated regime. We find that the [Fe II] line at 1.644 μm can be used to analyze the overall chemical and density structure of the exploding WD up to day 200 without considering B. At later times, positron transport and magnetic field effects become important. After about day 300, the line profile allows one to probe the size of the B-field. The profile becomes sensitive to the morphology of B at about day 500. In the presence of a large-scale dipole field, a broad line is produced in M Ch mass explosions that may appear flat-topped or rounded depending on the inclination at which the SN is observed. Small or no directional dependence of the spectra is found for small-scale B. We note that narrow-line profiles require central 56Ni as shown in our previous studies. Persistent broad-line, flat-topped profiles require high-density burning, which is the signature of a WD close to M Ch. Good time coverage is required to separate the effects of optical

  12. A POSSIBLE ULTRA STRONG AND BROAD Fe K{alpha} EMISSION LINE IN SEYFERT 2 GALAXY IRAS 00521-7054

    SciTech Connect

    Tan, Y.; Wang, J. X.; Shu, X. W.; Zhou Youyuan E-mail: jxw@ustc.edu.cn E-mail: yyzhou@ustc.edu.cn

    2012-03-15

    We present XMM-Newton spectra of the Seyfert 2 Galaxy IRAS 00521-7054. A strong feature at {approx}6 keV (observer's frame) can be formally fitted with a strong (EW = 1.3 {+-} 0.3 keV in the rest frame) and broad Fe K{alpha} line, extending down to 3 keV. The underlying X-ray continuum could be fitted with an absorbed power law (with {Gamma} = 1.8 {+-} 0.2 and N{sub H} 5.9{sup +0.6}{sub -0.7} Multiplication-Sign 10{sup 22} cm{sup -2}) plus a soft component. If due to relativistically smeared reflection by an X-ray illuminated accretion disk, the spin of the supermassive black hole (SMBH) is constrained to be 0.97{sup +0.03}{sub -0.13} (errors at 90% confidence level for one interesting parameter), and the accretion system is viewed at an inclination angle of 37 Degree-Sign {+-} 4 Degree-Sign . This would be the first type 2 active galactic nucleus reported with strong red Fe K{alpha} wing detected which demands a fast rotating SMBH. The unusually large EW would suggest that the light bending effect is strong in this source. Alternatively, the spectra could be fitted by a dual-absorber model (though with a global {chi}{sup 2} higher by {approx}6 for 283 dof) with N{sub H1} 7.0 {+-} 0.8 Multiplication-Sign 10{sup 22} cm{sup -2} covering 100% of the X-ray source, and N{sub H2} = 21.7{sup +5.6}{sub -5.4} Multiplication-Sign 10{sup 22} cm{sup -2} covering 71%, which does not require an extra broad Fe K{alpha} line.

  13. Identification of channel-lining residues in the M2 membrane-spanning segment of the GABA(A) receptor alpha1 subunit

    PubMed Central

    1996-01-01

    The gamma-aminobutyric acid type A (GABA(A)) receptors are the major inhibitory, postsynaptic, neurotransmitter receptors in the central nervous system. The binding of gamma-aminobutyric acid (GABA) to the GABA(A) receptors induces the opening of an anion-selective channel that remains open for tens of milliseconds before it closes. To understand how the structure of the GABA(A) receptor determines the functional properties such as ion conduction, ion selectivity and gating we sought to identify the amino acid residues that line the ion conducting channel. To accomplish this we mutated 26 consecutive residues (250-275), one at a time, in and flanking the M2 membrane- spanning segment of the rat alpha1 subunit to cysteine. We expressed the mutant alpha1 subunit with wild-type beta1 and gamma2 subunits in Xenopus oocytes. We probed the accessibility of the engineered cysteine to covalent modification by charged, sulfhydryl-specific reagents added extracellularly. We assume that among residues in membrane-spanning segments, only those lining the channel would be susceptible to modification by polar reagents and that such modification would irreversibly alter conduction through the channel. We infer that nine of the residues, alpha1 Val257, alpha1 Thr26l, alpha1 Thr262, alpha1 Leu264, alpha1 Thr265, alpha1 Thr268, alpha1 Ile27l, alpha1 Ser272 and alpha1 Asn275 are exposed in the channel. On a helical wheel plot, the exposed residues, except alpha1 Thr262, lie on one side of the helix in an arc of 120 degrees. We infer that the M2 segment forms an alpha helix that is interrupted in the region of alpha1 Thr262. The modification of residues as cytoplasmic as alpha1 Val257 in the closed state of the channel suggests that the gate is at least as cytoplasmic as alpha1 Val257. The ability of the positively charged reagent methanethiosulfonate ethylammonium to reach the level of alpha1 Thr261 suggests that the charge-selectivity filter is at least as cytoplasmic as this

  14. Alpha-2 adrenergic modulation of sleep: time-of-day-dependent pharmacodynamic profiles of dexmedetomidine and clonidine in the rat.

    PubMed

    Seidel, W F; Maze, M; Dement, W C; Edgar, D M

    1995-10-01

    Alpha adrenergic agonists such as clonidine are widely used for their antihypertensor effects, but they also cause sedation. The mechanisms underlying soporific effects of such compounds are poorly understood, but appear to involve the alpha-2 adrenergic receptor sub-type. To further investigate the role of this receptor in sleep-wake regulation, rats received injections i.p. either during their peak of activity (circadian time CT-18: 6 hr after lights out) or near the mid-point of their sleep-dominated phase (CT-5: 5 hr after lights on) with either the highly selective alpha-2 agonist dexmedetomidine (dMED) 0.02 to 0.04 mg/kg or the less selective alpha-2 agonist, clonidine 0.04 to 0.08 mg/kg, or vehicle. Clonidine and dMED showed remarkable overall similarities in their soporific profiles. Except for the lower dose of clonidine, both CT-5 and CT-18 treatments increased the percent of time spent in non-REM (NREM) sleep. The increase in NREM was followed by a reduction of NREM sleep that was accompanied by locomotor activity and body temperature above control levels. After CT-5 treatments, this period of reduced NREM sleep was followed by a secondary increase in NREM 7 to 10 hr posttreatment. REM sleep was markedly reduced for 9 to 10 hr after all treatments at both times of day, with elevated REM levels 18 to 30 hr posttreatment. Pre-treatment with the selective alpha-2 antagonist atipamezole (0.5 mg/kg) reversed the effects of CT-18 dMED 0.04 mg/kg except REM sleep suppression, which was only partially reversed. The NREM-inducing potency of dMED 0.02 mg/kg was greater when administered at CT-18 than at CT-5. Taken together with other evidence, these findings suggest that the profound NREM-inducing effects of dMED may be mediated by postsynaptic alpha-2 adrenoceptors. Furthermore, the pharmacodynamic action of alpha-2 adrenergic agonists, like many other sedative hypnotics (e.g., benzodiazepines), produce a hysteresis in sleep-wake regulation characterized by

  15. Genomic and phenotypic profiles of two Brazilian breast cancer cell lines derived from primary human tumors

    PubMed Central

    CORRÊA, NATÁSSIA C.R.; KUASNE, HELLEN; FARIA, JERUSA A.Q.A.; SEIXAS, CIÇA C.S.; SANTOS, IRIA G.D.; ABREU, FRANCINE B.; NONOGAKI, SUELY; ROCHA, RAFAEL M.; SILVA, GERLUZA APARECIDA BORGES; GOBBI, HELENICE; ROGATTO, SILVIA R.; GOES, ALFREDO M.; GOMES, DAWIDSON A.

    2013-01-01

    Breast cancer is the most common type of cancer among women worldwide. Research using breast cancer cell lines derived from primary tumors may provide valuable additional knowledge regarding this type of cancer. Therefore, the aim of this study was to investigate the phenotypic profiles of MACL-1 and MGSO-3, the only Brazilian breast cancer cell lines available for comparative studies. We evaluated the presence of hormone receptors, proliferation, differentiation and stem cell markers, using immunohistochemical staining of the primary tumor, cultured cells and xenografts implanted in immunodeficient mice. We also investigated the ability of the cell lines to form colonies and copy number alterations by array comparative genomic hybridization. Histopathological analysis showed that the invasive primary tumor from which the MACL-1 cell line was derived, was a luminal A subtype carcinoma, while the ductal carcinoma in situ (DCIS) that gave rise to the MGSO-3 cell line was a HER2 subtype tumor, both showing different proliferation levels. The cell lines and the tumor xenografts in mice preserved their high proliferative potential, but did not maintain the expression of the other markers assessed. This shift in expression may be due to the selection of an ‘establishment’ phenotype in vitro. Whole-genome DNA evaluation showed a large amount of copy number alterations (CNAs) in the two cell lines. These findings render MACL-1 and MGSO-3 the first characterized Brazilian breast cancer cell lines to be potentially used for comparative research. PMID:23404580

  16. Measurement of the profile and intensity of the solar He I lambda 584-A resonance line

    NASA Technical Reports Server (NTRS)

    Maloy, J. O.; Hartmann, U. G.; Judge, D. L.; Carlson, R. W.

    1978-01-01

    The intensity and profile of the helium resonance line at 584 A from the entire disk of the sun was investigated by using a rocket-borne helium-filled spectrometer and a curve-of-growth technique. The line profile was found to be accurately represented by a Gaussian profile with full width at half maximum of 122 + or - 10 mA, while the integrated intensity was measured to be 2.6 + or - 1.3 billion photons/s per sq cm at solar activity levels of F(10.7) = 90.8 x 10 to the -22nd per sq m/Hz and Rz = 27. The measured line width is in good agreement with previous spectrographic measurements, but the integrated intensity is larger than most previous photoelectric measurements. However, the derived line center flux of 20 + or - 10 billion photons/s per sq cm/A is in good agreement with values inferred from airglow measurements.

  17. Ultraviolet and Optical Line Profile Variations in the Spectrum of ɛ Persei

    NASA Astrophysics Data System (ADS)

    Gies, D. R.; Kambe, E.; Josephs, T. S.; Bagnuolo, W. G., Jr.; Choi, Y. J.; Gudehus, D.; Guyton, K. M.; Hartkopf, W. I.; Hildebrand, J. L.; Kaye, A. B.; Mason, B. D.; Riddle, R. L.; Sowers, J. W.; Turner, N. H.; Wilson, J. W.; Xiong, Y.

    1999-11-01

    The rapid variable star, ɛ Per (B0.5 IV-III), displays the largest amplitude profile fluctuations known among the growing number of massive, spectrum-variable stars. Here we present an analysis of a continuous 5 day run of IUE UV spectroscopy, and we show for the first time that the systematic, blue-to-red moving patterns observed in high-quality optical spectra are also present in the UV photospheric lines. We present cross-correlation functions of the individual spectra with that of a narrow-lined standard that produce a high signal-to-noise ratio representation of the blue-to-red moving bump patterns found in individual lines. We then use time series analysis methods to determine the periodic components of the profile variations (after reregistering the spectra to correct for binary motion). There are at least six periods present (ranging from 8.46 to 2.27 hr), and most of these signals are also found in optical line variations observed in 1986 (although the relative amplitudes have changed significantly). Furthermore, analysis of a shorter time series of IUE spectra from 1984 shows that similar periods were present then. We also present Hα and He I λ6678 profiles obtained with the Georgia State University Multi-Telescope Telescope, which were made simultaneously with IUE, and we show that the profile variations are essentially identical in the UV and optical ranges. We rule out rotational modulation and circumstellar gas obscuration as possible causes, and we suggest instead that the variations are the result of photospheric nonradial pulsations of relatively low degree (l=3-5). There were significant changes (~10%) in the equivalent widths of the UV stellar wind lines during the IUE run, and we suggest that wind strengthening events are related to episodes of large-amplitude, constructive interference between the NRP modes. Thus, intermode beating may play an important role in promoting wind loss from massive stars.

  18. Lipoprotein profiles of hepatic cell lines at various stages of differentiation.

    PubMed

    Sasaki, Akira; Kimura, Fumiko; Miura, Mizuho; Toshima, Gen; Takahashi, Junichiro; Maruya, Sayuri; Kobayashi, Masayuki; Hata, Keishi

    2017-02-01

    We studied the lipoprotein profiles of human hepatic cells at various stages of differentiation. The production of three major classes of lipoproteins, very low-density lipoprotein (VLDL), low-density lipoprotein (LDL), and high-density lipoprotein (HDL), was detected in three well-differentiated human hepatoma cell lines and primary human hepatocytes; however, these lipoproteins were not detected in the culture medium in which undifferentiated hepatoma cell lines were grown. Reverse transcription polymerase chain reaction analysis demonstrated that the expression levels of apolipoprotein A1 (ApoA1), ApoB100, and microsomal triglyceride transfer protein (MTP) were markedly lower in the undifferentiated hepatoma cell lines than in the well-differentiated hepatoma cell lines and primary hepatocytes. These results indicate that apolipoprotein synthesis, and triglyceride-transport by MTP might be rate-limiting steps in lipoprotein production in mature hepatic cells.

  19. A Tie2-driven BAC-TRAP transgenic line for in vivo endothelial gene profiling

    PubMed Central

    Santhosh, Devi; Huang, Zhen

    2016-01-01

    Recent technological innovations including bacterial artificial chromosome-based translating ribosome affinity purification (BAC-TRAP) have greatly facilitated analysis of cell type-specific gene expression in vivo, especially in the nervous system. To better study endothelial gene expression in vivo, we have generated a BAC-TRAP transgenic mouse line where the L10a ribosomal subunit is tagged with EGFP and placed under the control of the endothelium-specific Tie2 (Tek) promoter. We show that transgene expression in this line is widely, but specifically, detected in endothelial cells in several brain regions throughout pre- and postnatal development, as well as in other organs. We also show that this line results in highly significant enrichment of endothelium-specific mRNAs from brain tissues at different stages. This BAC-TRAP line therefore provides a useful genetic tool for in vivo endothelial gene profiling under various developmental, physiological, and pathological conditions. PMID:26817747

  20. Observation and interpretation of the asymmetric Stokes Q, U, and V line profiles in sunspots

    NASA Technical Reports Server (NTRS)

    Sanchez Almeida, J.; Lites, B. W.

    1992-01-01

    We present a first approach to systematic characterization and interpretation of observed asymmetries of Stokes profiles as a function of spatial position within sunspots. Spatial maps of the full Stokes profiles of Fe I 6302.5 A gathered in large sunspots using the HAO Stokes II instrument reveal asymmetries that vary systematically across large sunspots observed during 1980. We use the inversion technique by Landolfi to extract the velocity gradients along the line of sight (LOS) which give rise to these asymmetries. The gradients derived from full Stokes profiles are in agreement with previous characterizations of the Evershed flow derived from Stokes I profiles alone (i.e., a flow increasing with depth in the atmosphere). By coupling this semiempirical gradient of velocity with a magnetic field inclination varying along the LOS, the synthesized profiles are able to mimic basic observed features of the broad-band circular polarization present in our data and observed previously by others. This characterization has magnetic field lines which become progressively more horizontal with depth in the penumbra.

  1. Raman-Scattering Line Profiles of the Symbiotic Star AG Peg

    NASA Astrophysics Data System (ADS)

    Lee, Seong-Jae; Hyung, Siek

    2017-06-01

    The high dispersion Hα and Hβ line profiles of the Symbiotic star AG Peg consist of top double Gaussian and bottom components. We investigated the formation of the broad wings with Raman scattering mechanism. Adopting the same physical parameters from the photo-ionization study of Kim and Hyung (2008) for the white dwarf and the ionized gas shell, Monte Carlo simulations were carried out for a rotating accretion disk geometry of non-symmetrical latitude angles from -7° < θ < +7° to -16° < θ < +16°. The smaller latitude angle of the disk corresponds to the approaching side of the disk responsible for weak blue Gaussian profile, while the wider latitude angle corresponds to the other side of the disk responsible for the strong red Gaussian profile. We confirmed that the shell has the high gas density ˜ 109.85 cm-3 in the ionized zone of AG Peg derived in the previous photo-ionization model study. The simulation with various HI shell column densities (characterized by a thickness ΔD × gas number density nH) shows that the HI gas shell with a column density Hhi ≈ 3 - 5 × 1019 cm-2 fits the observed line profiles well. The estimated rotation speed of the accretion disk shell is in the range of 44 - 55 kms-1. We conclude that the kinematically incoherent structure involving the outflowing gas from the giant star caused an asymmetry of the disk and double Gaussian profiles found in AG Peg.

  2. Effects of culture media on metabolic profiling of the human gastric cancer cell line SGC7901.

    PubMed

    Huang, Zicheng; Shao, Wei; Gu, Jinping; Hu, Xiaomin; Shi, Yuanzhi; Xu, Wenqi; Huang, Caihua; Lin, Donghai

    2015-07-01

    Cell culture metabolomics has demonstrated significant advantages in cancer research. However, its applications have been impeded by some influencing factors such as culture media, which could significantly affect cellular metabolic profiles and lead to inaccuracy and unreliability of comparative metabolomic analysis of cells. To evaluate the effects of different culture media on cellular metabolic profiling, we performed NMR-based metabolomic analysis of the human gastric cancer cell line SGC7901 cultured in both RPMI1640 and DMEM. We found that SGC7901 cultured in the two media exhibited distinct metabolic profiles with obviously different levels of discrepant metabolites, even though they showed almost the same cellular morphology and proliferation rates. When SGC7901 originally cultured in RPMI1640 was gradually acclimated in DMEM, both the metabolic profiles and most of the discrepant metabolite levels gradually converged toward those of the cells originally cultured in DMEM without significantly altered cell proliferation rates. However, several metabolite levels did not show the converging trends. Our results indicate that the effects of culture media on metabolic profiling must be carefully taken into account for comparative metabolomic analysis of cell lines. This work may be of benefit to the development of cell culture metabolomics.

  3. HST Emission Line Galaxies at z ~ 2: Comparing Physical Properties of Lyman Alpha and Optical Emission Line Selected Galaxies

    NASA Astrophysics Data System (ADS)

    Hagen, Alex; Zeimann, Gregory R.; Behrens, Christoph; Ciardullo, Robin; Grasshorn Gebhardt, Henry S.; Gronwall, Caryl; Bridge, Joanna S.; Fox, Derek B.; Schneider, Donald P.; Trump, Jonathan R.; Blanc, Guillermo A.; Chiang, Yi-Kuan; Chonis, Taylor S.; Finkelstein, Steven L.; Hill, Gary J.; Jogee, Shardha; Gawiser, Eric

    2016-01-01

    We compare the physical and morphological properties of z ˜ 2 Lyα emitting galaxies (LAEs) identified in the HETDEX Pilot Survey and narrow band studies with those of z ˜ 2 optical emission line selected galaxies (oELGs) identified via HST WFC3 infrared grism spectroscopy. Both sets of galaxies extend over the same range in stellar mass (7.5\\lt {log}M/{M}⊙ \\lt 10.5), size (0.5 < R < 3.0 kpc), and star formation rate (˜ 1\\lt {{SFR}}\\lt 100 {M}⊙ yr-1). Remarkably, a comparison of the most commonly used physical and morphological parameters—stellar mass, half-light radius, UV slope, SFR, ellipticity, nearest neighbor distance, star formation surface density, specific SFR, [O iii] luminosity, and [O iii] equivalent width—reveals no statistically significant differences between the populations. This suggests that the processes and conditions which regulate the escape of Lyα from a z ˜ 2 star-forming galaxy do not depend on these quantities. In particular, the lack of dependence on the UV slope suggests that Lyα emission is not being significantly modulated by diffuse dust in the interstellar medium. We develop a simple model of Lyα emission that connects LAEs to all high-redshift star-forming galaxies where the escape of Lyα depends on the sightline through the galaxy. Using this model, we find that mean solid angle for Lyα escape is {{{Ω }}}{{Ly}α }=2.4+/- 0.8 steradians; this value is consistent with those calculated from other studies.

  4. Stark broadening for diagnostics of the electron density in non-equilibrium plasma utilizing isotope hydrogen alpha lines

    SciTech Connect

    Yang, Lin; Tan, Xiaohua; Wan, Xiang; Chen, Lei; Jin, Dazhi; Qian, Muyang; Li, Gongping

    2014-04-28

    Two Stark broadening parameters including FWHM (full width at half maximum) and FWHA (full width at half area) of isotope hydrogen alpha lines are simultaneously introduced to determine the electron density of a pulsed vacuum arc jet. To estimate the gas temperature, the rotational temperature of the C{sub 2} Swan system is fit to 2500 ± 100 K. A modified Boltzmann-plot method with b{sub i}-factor is introduced to determine the modified electron temperature. The comparison between results of atomic and ionic lines indicates the jet is in partial local thermodynamic equilibrium and the electron temperature is close to 13 000 ± 400 K. Based on the computational results of Gig-Card calculation, a simple and precise interpolation algorithm for the discrete-points tables can be constructed to obtain the traditional n{sub e}-T{sub e} diagnostic maps of two Stark broadening parameters. The results from FWHA formula by the direct use of FWHM = FWHA and these from the diagnostic map are different. It can be attributed to the imprecise FWHA formula form and the deviation between FWHM and FWHA. The variation of the reduced mass pair due to the non-equilibrium effect contributes to the difference of the results derived from two hydrogen isotope alpha lines. Based on the Stark broadening analysis in this work, a corrected method is set up to determine n{sub e} of (1.10 ± 0.08) × 10{sup 21} m{sup −3}, the reference reduced mass μ{sub 0} pair of (3.30 ± 0.82 and 1.65 ± 0.41), and the ion kinetic temperature of 7900 ± 1800 K.

  5. Calculated resonance line profiles of [Mg II], [C II], and [Si IV] in the solar atmosphere

    SciTech Connect

    Avrett, E.; McKillop, S.; Landi, E.

    2013-12-20

    NASA's Interface Region Imaging Spectrograph space mission, launched 2013 June 27, is intended to study the structure of the solar chromosphere and the transition region between the chromosphere and corona. The spectral lines to be observed include the Mg II k line at 2796.5 Å, the C II 1334.5 Å line, and the Si IV line at 1393.8 Å, which are formed in the middle chromosphere, the upper chromosphere, and the lower transition region, respectively. Here we calculate the profiles of these lines from four models of the solar atmosphere, intended to represent the faint and mean internetwork, a network lane, and bright network. We show how the profiles change from the center of the solar disk toward the limb of the Sun and in response to outflows and inflows. These results are intended to cover the range of expected quiet-Sun observations and assist in their interpretation. We expect that the observations will lead to improvements in the models, which can then be used to estimate the required non-radiative heating in the different regions.

  6. Appropriate line profiles for radiation modeling in the detection of atmospheric pollutants

    NASA Technical Reports Server (NTRS)

    Tiwari, S. N.

    1973-01-01

    Absorption by Lorentz, Doppler, and Voight lines are compared for a range of atmospheric parameters. It is found that, for the intermediate path lengths, the use of the combined Lorentz-Doppler (Voight) profile is essential in calculating the atmospheric transmittance. A brief review of band models, to approximate the absorption over certain frequency interval, is presented. Expressions for total radiative energy emergent from the atmosphere are given which, with appropriate line or band models, can be used to reduce the data obtained from radiation measurement by an instrument mounted on an aircraft or a satellite. By employing the inversion procedure, the concentration of atmospheric pollutants can be obtained from the measured data.

  7. A three-dimensional hydrodynamical line profile analysis of iron lines and barium isotopes in HD 140283

    NASA Astrophysics Data System (ADS)

    Gallagher, A. J.; Ludwig, H.-G.; Ryan, S. G.; Aoki, W.

    2015-07-01

    Context. Heavy-elements, i.e. those beyond the iron peak, mostly form via two neutron capture processes: the slow (s-) and the rapid (r-) process. Metal-poor stars should contain fewer isotopes that form via the s-process, according to currently accepted theory. It has been shown in several investigations that theory and observation do not agree well, raising questions on the validity of either the methodology or the theory. Aims: We analyse the metal-poor star HD 140283, for which we have a high quality spectrum. We test whether a three-dimensional (3D) local thermodynamic equilibrium (LTE) stellar atmosphere and spectrum synthesis code permits a more reliable analysis of the iron abundance and barium isotope ratio than a one-dimensional (1D) LTE analysis. Methods: Using 3D hydrodynamical model atmospheres, we examine 91 iron lines of varying strength and formation depth. This provides us with the star's rotational speed. With this, we model the barium isotope ratio by exploiting the hyperfine structure of the singly ionised 4554 Å resonance line, and study the impact of the uncertainties in the stellar parameters. Results: The star's rotational speed was found to be 1.65 ± 0.05 km s-1. Barium isotopes under the 3D paradigm show a dominant r-process signature as 77 ± 6 ± 17% (fodd = 0.38 ± 0.02 ± 0.06) of barium isotopes form via the r-process, where errors represent the assigned random and systematic errors, respectively. We find that 3D LTE fits reproduce iron line profiles better than those in 1D, but do not provide a unique abundance (within the uncertainties). However, we demonstrate that the isotopic ratio is robust against this shortcoming. Conclusions: Our barium isotope result agrees well with currently accepted theory regarding the formation of the heavy-elements during the early Galaxy. The improved fit to the asymmetric iron line profiles suggests that the current state of 3D LTE modelling provides excellent simulations of fluid flows. However

  8. Analysis of the activation state of alpha4beta1 integrin in human B cell lines derived from myeloma, leukemia or lymphoma.

    PubMed

    García-Gila, M; Cabañas, C; García-Pardo, A

    1997-12-01

    Myeloma cells specifically localize in the bone marrow and rarely circulate in blood. To study whether this immobilization could be partially explained by the presence of constitutively activated integrins, particularly alpha4beta1, we used the activation reporter HUTS-21 anti-beta1 mAb. These analyses showed that beta1 integrins on myeloma cells were moderately active and could be upregulated similarly to integrins on lymphoma or leukemia cells. Myeloma cells were also tested for their ability to attach to RGD-containing fibronectin fragments, a property of activated (but not resting) alpha4beta1. Two cell lines adhered to these fragments and this was inhibited by anti-alpha5 but not by anti-alpha4 mAbs. These results show that myeloma cells bear low/moderately active alpha4beta1 and support the notion that multiple interactions contribute to their localization in the bone marrow.

  9. Sulphation of proteins secreted by a human hepatoma-derived cell line. Sulphation of N-linked oligosaccharides on alpha 2HS-glycoprotein.

    PubMed Central

    Hortin, G; Green, E D; Baenziger, J U; Strauss, A W

    1986-01-01

    Several human glycoproteins, including alpha 1-antitrypsin, alpha 1-acid glycoprotein, transferrin, caeruloplasmin and alpha 2HS-glycoprotein, synthesized by the hepatoma-derived cell line HepG2 were observed to contain covalently linked sulphate. These proteins were estimated to contain about 0.1 mol of sulphate/mol of protein. The most abundant of the sulphated glycoproteins, alpha 2HS-glycoprotein, was analysed in detail. All of the sulphate on this protein was attached to N-linked oligosaccharides which contained sialic acid and resisted release by endoglycosidase H. Several independent analytical approaches established that approx. 10% of the molecules of alpha 2HS-glycoprotein contained sulphate. Our results suggest that a number of human plasma proteins contain small amounts of sulphate linked to oligosaccharides. Images Fig. 1. Fig. 2. Fig. 3. PMID:3017304

  10. Profiles of neutral lines emitted from weakly non-ideal helium plasmas produced in flashlamps

    SciTech Connect

    Vitel, Yves; El Bezzari, Mohammed; D'yachkov, Lev G.; Kurilenkov, Yuri K.

    1999-04-01

    High pressure helium arcs are created in linear flashlamps. Plasma diagnostics taking into account non-ideality effects, give on axis electron densities in the range 2 10{sup 17}-1.7 10{sup 18} cm{sup -3} and temperatures included between 20000 and 30000 K. In these conditions of dense plasmas, profiles of emitted neutral lines are recorded and compared with other experimental values and theoretical calculations.

  11. A Study of the Lyman-α Line Profile in DBA White Dwarfs

    NASA Astrophysics Data System (ADS)

    Genest-Beaulieu, C.; Bergeron, P.

    2017-03-01

    The hydrogen abundances in DBA white dwarfs determined from optical or UV spectra have been reported to differ significantly in some studies. We revisit this problem using our own model atmospheres and synthetic spectra, and present a theoretical investigation of the Lyman-α line profile as a function of effective temperature and hydrogen abundance. We identify one possible solution to this discrepancy and show considerable improvement from a detailed analysis of optical and UV spectra of DBA stars.

  12. A comparitive assessement of cytokine expression in human-derived cell lines exposed to alpha particles and X-rays.

    PubMed

    Chauhan, Vinita; Howland, Matthew; Wilkins, Ruth

    2012-01-01

    Alpha- (α-) particle radiation exposure has been linked to the development of lung cancer and has been identified as a radiation type likely to be employed in radiological dispersal devices. Currently, there exists a knowledge gap concerning cytokine modulations associated with exposure to α-particles. Bio-plex technology was employed to investigate changes in proinflammatory cytokines in two human-derived cell lines. Cells were irradiated at a dose of 1.5 Gy to either α-particles or X-rays at equivalent dose rates. The two cell lines exhibited a unique pattern of cytokine expression and the response varied with radiation type. Of the 27 cytokines assessed, only vascular endothelin growth factor (VEGF) was observed to be modulated in both cell lines solely after α-particle exposure, and the expression of VEGF was shown to be dose responsive. These results suggest that certain proinflammatory cytokines may be involved in the biological effects related to α- particle exposure and the responses are cell type and radiation type specific.

  13. A Comparitive Assessement of Cytokine Expression in Human-Derived Cell Lines Exposed to Alpha Particles and X-Rays

    PubMed Central

    Chauhan, Vinita; Howland, Matthew; Wilkins, Ruth

    2012-01-01

    Alpha- (α-) particle radiation exposure has been linked to the development of lung cancer and has been identified as a radiation type likely to be employed in radiological dispersal devices. Currently, there exists a knowledge gap concerning cytokine modulations associated with exposure to α-particles. Bio-plex technology was employed to investigate changes in proinflammatory cytokines in two human-derived cell lines. Cells were irradiated at a dose of 1.5 Gy to either α-particles or X-rays at equivalent dose rates. The two cell lines exhibited a unique pattern of cytokine expression and the response varied with radiation type. Of the 27 cytokines assessed, only vascular endothelin growth factor (VEGF) was observed to be modulated in both cell lines solely after α-particle exposure, and the expression of VEGF was shown to be dose responsive. These results suggest that certain proinflammatory cytokines may be involved in the biological effects related to α- particle exposure and the responses are cell type and radiation type specific. PMID:22619631

  14. Time evolution of a miniflare as seen in H-alpha, UV lines, and X-rays

    NASA Technical Reports Server (NTRS)

    Fontenla, J.; Schmieder, B.; Simnett, G. M.; Tandberg-Hanssen, E.

    1994-01-01

    A miniflare that occurred in active region Hale 16896 on 1980 June 15 was observed in H-alpha, UV lines, and soft X-rays. These data allow us to analyze the flare emission and derive the energetics and dynamics of the chromospheric plasma involved. Our results indicate that the energy released by the miniflare was about 10(exp 28) ergs, about four orders of magnitude smaller than that of a large flare. However, hard X-rays (5.5-8.0 keV) were observed which indicated a plasma with temperature as high as 27 x 10(exp 6) K. The H-alpha wings, C IV, and X-rays all showed a short-lived and compact (3 sec x 3 sec) brightening in a location near the leading sunspot. At this location, small-scale changes in the magnetic field were observed from about 2 hr before to about 6 hr after the miniflare. Only very small velocities seem to have been associated with most of the event in H-alpha. The data are consistent with short and dense loops at temperatures above 10(exp 7) K which lost a large fraction of their energy via downward conduction through regions at the footpoints. Several secondary events appear to have been triggered by the miniflare along an arch filament which itself was not greatly affected. A number of much less energetic (10(exp 25)-10(exp 26) erg) events preceded and followed the mini-flare. One of these occurred 11 minutes after the mini-flare and displayed a highly Doppler-shifted signature from the foot-point of a C IV arch. This arch delineates the connection that existed between the location of the mini-flare and the location of secondary events triggered by the flare.

  15. Distinctive characteristics of transcriptional profiles from two epithelial cell lines upon interaction with Actinobacillus actinomycetemcomitans.

    PubMed

    Mans, J J; Baker, H V; Oda, D; Lamont, R J; Handfield, M

    2006-08-01

    Transcriptional profiling and gene ontology analyses were performed to investigate the unique responses of two different epithelial cell lines to an Actinobacillus actinomycetemcomitans challenge. A total of 2867 genes were differentially regulated among all experimental conditions. The analysis of these 2867 genes revealed that the predominant specific response to infection in HeLa cells was associated with the regulation of enzyme activity, RNA metabolism, nucleoside and nucleic acid transport and protein modification. The predominant specific response in immortalized human gingival keratinocytes (IHGK) was associated with the regulation of angiogenesis, chemotaxis, transmembrane receptor protein tyrosine kinase signaling, cell differentiation, apoptosis and response to stress. Of particular interest, stress response genes were significantly - yet differently - affected in both cell lines. In HeLa cells, only three regulated genes impacted the response to stress, and the response to unfolded protein was the only term that passed the ontology filters. This strikingly contrasted with the profiles obtained for IHGK, in which 61 regulated genes impacted the response to stress and constituted an extensive network of cell responses to A. actinomycetemcomitans interaction (response to pathogens, oxidative stress, unfolded proteins, DNA damage, starvation and wounding). Hence, while extensive similarities were found in the transcriptional profiles of these two epithelial cell lines, significant differences were highlighted. These differences were predominantly found in pathways that are associated with host-pathogen interactions.

  16. Method for measuring radial impurity emission profiles using correlations of line integrated signals

    NASA Astrophysics Data System (ADS)

    Kuldkepp, M.; Brunsell, P. R.; Drake, J.; Menmuir, S.; Rachlew, E.

    2006-04-01

    A method of determining radial impurity emission profiles is outlined. The method uses correlations between line integrated signals and is based on the assumption of cylindrically symmetric fluctuations. Measurements at the reversed field pinch EXTRAP T2R show that emission from impurities expected to be close to the edge is clearly different in raw as well as analyzed data to impurities expected to be more central. Best fitting of experimental data to simulated correlation coefficients yields emission profiles that are remarkably close to emission profiles determined using more conventional techniques. The radial extension of the fluctuations is small enough for the method to be used and bandpass filtered signals indicate that fluctuations below 10kHz are cylindrically symmetric. The novel method is not sensitive to vessel window attenuation or wall reflections and can therefore complement the standard methods in the impurity emission reconstruction procedure.

  17. Sound speed profile inversion using a horizontal line array in shallow water

    NASA Astrophysics Data System (ADS)

    Li, ZhengLin; He, Li; Zhang, RenHe; Li, FengHua; Yu, YanXin; Lin, Peng

    2015-01-01

    It is better to use a simple configuration to enhance the applicability of ocean environment inversion in shallow water. A matched-field inversion method based on a horizontal line array (HLA) is used to retrieve the variation of sound speed profile. The performance of the inversion method is verified in the South China Sea in June, 2010. An HLA laid at bottom was used to receive signals from a bottom-mounted transducer. Inverted mean sound speed profiles from 9-hour long acoustic signals are in good agreement with measurements from two temperature chains at the sites of the source and receiver. The results show that an HLA can be used to monitor the variability of shallow-water sound speed profile.

  18. Anisotropic Dislocation Line Energy and Crack Tip Dislocation Nucleation in (alpha)RDX

    DTIC Science & Technology

    2013-11-01

    November 2013 Anisotropic Dislocation Line Energy and Crack Tip Dislocation Nucleation in αRDX Lynn B. Munday and Jaroslaw Knap Computational ...public release; distribution is unlimited. 13. SUPPLEMENTARY NOTES 14. ABSTRACT This work reports on the algorithms used to determine the...anisotropic and isotropic elastic properties of dislocations and their nucleation from a crack tip. The appendix contains a numerical implementation of these

  19. Searching for Dwarf H Alpha Emission-line Galaxies within Voids III: First Spectra

    NASA Astrophysics Data System (ADS)

    Moody, J. Ward; Draper, Christian; McNeil, Stephen; Joner, Michael D.

    2017-02-01

    The presence or absence of dwarf galaxies with {M}r\\prime > -14 in low-density voids is determined by the nature of dark matter halos. To better understand what this nature is, we are conducting an imaging survey through redshifted Hα filters to look for emission-line dwarf galaxies in the centers of two nearby galaxy voids called FN2 and FN8. Either finding such dwarfs or establishing that they are not present is a significant result. As an important step in establishing the robustness of the search technique, we have observed six candidates from the survey of FN8 with the Gillett Gemini telescope and GMOS spectrometer. All of these candidates had emission, although none was Hα. The emission in two objects was the [O iii]λ4959, 5007 doublet plus Hβ, and the emission in the remaining four was the [O ii]λ3727 doublet, all from objects beyond the void. While no objects were within the void, these spectra show that the survey is capable of finding emission-line dwarfs in the void centers that are as faint as {M}r\\prime ∼ -12.4, should they be present. These spectra also show that redshifts estimated from our filtered images are accurate to several hundred km s‑1 if the line is identified correctly, encouraging further work in finding ways to conduct redshift surveys through imaging alone.

  20. First evidence of non-Gaussian solar flare EUV spectral line profiles and accelerated non-thermal ion motion

    NASA Astrophysics Data System (ADS)

    Jeffrey, Natasha L. S.; Fletcher, Lyndsay; Labrosse, Nicolas

    2016-05-01

    Context. The properties of solar flare plasma can be determined from the observation of optically thin lines. The emitting ion distribution determines the shape of the spectral line profile, with an isothermal Maxwellian ion distribution producing a Gaussian profile. Non-Gaussian line profiles may indicate more complex ion distributions. Aims: We investigate the possibility of determining flare-accelerated non-thermal ion and/or plasma velocity distributions. Methods: We study EUV spectral lines produced during a flare SOL2013-05-15T01:45 using the Hinode EUV Imaging Spectrometer (EIS). The flare is located close to the eastern solar limb with an extended loop structure, allowing the different flare features: ribbons, hard X-ray (HXR) footpoints and the loop-top source to be clearly observed in UV, EUV and X-rays. EUV line spectroscopy is performed in seven different regions covering the flare. We study the line profiles of the isolated and unblended Fe XVI lines (λ262.9760 Å ) mainly formed at temperatures of ~2 to 4 MK. Suitable Fe XVI line profiles at one time close to the peak soft X-ray emission and free of directed mass motions are examined using: 1. a higher moments analysis, 2. Gaussian fitting, and 3. by fitting a kappa distribution line profile convolved with a Gaussian to account for the EIS instrumental profile. Results: Fe XVI line profiles in the flaring loop-top, HXR footpoint and ribbon regions can be confidently fitted with a kappa line profile with an extra variable κ, giving low, non-thermal κ values between 2 and 3.3. An independent higher moments analysis also finds that many of the spectral line kurtosis values are higher than the Gaussian value of 3, even with the presence of a broad Gaussian instrumental profile. Conclusions: A flare-accelerated non-thermal ion population could account for both the observed non-Gaussian line profiles, and for the Fe XVI "excess" broadening found from Gaussian fitting, if the emitting ions are interacting

  1. The Loopy Ultraviolet Line Profiles of RU Lupi: Accretion, Outflows, and Fluorescence

    NASA Astrophysics Data System (ADS)

    Herczeg, Gregory J.; Walter, Frederick M.; Linsky, Jeffrey L.; Gahm, Gösta F.; Ardila, David R.; Brown, Alexander; Johns-Krull, Christopher M.; Simon, Michal; Valenti, Jeff A.

    2005-06-01

    We present far-ultraviolet (FUV) spectra of the classical T Tauri star RU Lup covering the 912-1710 Å spectral range, as observed by the Hubble Space Telescope STIS and the Far Ultraviolet Spectroscopic Explorer satellite. We use these spectra, which are rich in emission and absorption lines, to probe both the accreting and outflowing gas. Absorption in the Lyα profile constrains the extinction to AV~0.07 mag, which we confirm with other diagnostics. We estimate a mass accretion rate of (5+/-2)×10-8 Msolar yr-1 using the optical-NUV accretion continuum. The accreting gas is also detected in bright, broad lines of C IV, Si IV, and N V, which all show complex structures across the line profile. Many other emission lines, including those of H2 and Fe II, are pumped by Lyα. RU Lup's spectrum varies significantly in the FUV; our STIS observations occurred when RU Lup was brighter than several other observations in the FUV, possibly because of a high mass accretion rate.

  2. Large-Scale Profiling of Kinase Dependencies in Cancer Cell Lines

    PubMed Central

    Campbell, James; Ryan, Colm J.; Brough, Rachel; Bajrami, Ilirjana; Pemberton, Helen N.; Chong, Irene Y.; Costa-Cabral, Sara; Frankum, Jessica; Gulati, Aditi; Holme, Harriet; Miller, Rowan; Postel-Vinay, Sophie; Rafiq, Rumana; Wei, Wenbin; Williamson, Chris T.; Quigley, David A.; Tym, Joe; Al-Lazikani, Bissan; Fenton, Timothy; Natrajan, Rachael; Strauss, Sandra J.; Ashworth, Alan; Lord, Christopher J.

    2016-01-01

    Summary One approach to identifying cancer-specific vulnerabilities and therapeutic targets is to profile genetic dependencies in cancer cell lines. Here, we describe data from a series of siRNA screens that identify the kinase genetic dependencies in 117 cancer cell lines from ten cancer types. By integrating the siRNA screen data with molecular profiling data, including exome sequencing data, we show how vulnerabilities/genetic dependencies that are associated with mutations in specific cancer driver genes can be identified. By integrating additional data sets into this analysis, including protein-protein interaction data, we also demonstrate that the genetic dependencies associated with many cancer driver genes form dense connections on functional interaction networks. We demonstrate the utility of this resource by using it to predict the drug sensitivity of genetically or histologically defined subsets of tumor cell lines, including an increased sensitivity of osteosarcoma cell lines to FGFR inhibitors and SMAD4 mutant tumor cells to mitotic inhibitors. PMID:26947069

  3. Berry phases and profiles of line wings and rainbow satellites induced by optical collisions

    NASA Astrophysics Data System (ADS)

    Ciuryło, R.; Szudy, J.; Baylis, W. E.

    2015-09-01

    The concept of Berry phase is included in an analysis of the intensity distribution in far wings of pressure-broadened spectral lines emitted or absorbed by atoms placed in an external cone-rotating electric field. Particular attention is focused on frequency regions where rainbow satellite bands appear. A classical-path treatment that employs the time-dependent Schrödinger equation is used to derive an expression for the line shape, and it uses a dipole transition moment calculated with quasimolecular wave functions given by the Berry version of the adiabatic approximation. It is found that in the presence of an external rotating electric field, the intensity distribution in far wings can be expressed in terms of the universal line shape function of the unified Franck-Condon theory once energy shifts due to Stark and Berry effects are taken into account. We show that the influence of Berry phase in the profiles of the far wings can be manifested either in the form of deviations of observed profiles from the quasistatic distribution or the appearance of additional features in the vicinity of the maximum of the rainbow satellite band. As an example, the modification of the rainbow satellite at 162.3 nm in the red wing of the self-broadened Lyman-α line of hydrogen, caused by an external rotating electric field, is considered.

  4. The implementation of non-Voigt line profiles in the HITRAN database: H2 case study

    NASA Astrophysics Data System (ADS)

    Wcisło, P.; Gordon, I. E.; Tran, H.; Tan, Y.; Hu, S.-M.; Campargue, A.; Kassi, S.; Romanini, D.; Hill, C.; Kochanov, R. V.; Rothman, L. S.

    2016-07-01

    Experimental capabilities of molecular spectroscopy and its applications nowadays require a sub-percent or even sub-per mille accuracy of the representation of the shapes of molecular transitions. This implies the necessity of using more advanced line-shape models which are characterized by many more parameters than a simple Voigt profile. It is a great challenge for modern molecular spectral databases to store and maintain the extended set of line-shape parameters as well as their temperature dependences. It is even more challenging to reliably retrieve these parameters from experimental spectra over a large range of pressures and temperatures. In this paper we address this problem starting from the case of the H2 molecule for which the non-Voigt line-shape effects are exceptionally pronounced. For this purpose we reanalyzed the experimental data reported in the literature. In particular, we performed detailed line-shape analysis of high-quality spectra obtained with cavity-enhanced techniques. We also report the first high-quality cavity-enhanced measurement of the H2 fundamental vibrational mode. We develop a correction to the Hartmann-Tran profile (HTP) which adjusts the HTP to the particular model of the velocity-changing collisions. This allows the measured spectra to be better represented over a wide range of pressures. The problem of storing the HTP parameters in the HITRAN database together with their temperature dependences is also discussed.

  5. Expression profile of hypothalamic neuropeptides in chicken lines selected for high or low residual feed intake.

    PubMed

    Sintubin, P; Greene, E; Collin, A; Bordas, A; Zerjal, T; Tesseraud, S; Buyse, J; Dridi, S

    2014-08-01

    The R(+) and R(-) chicken lines have been divergently selected for high (R(+)) or low (R(-)) residual feed intake. For the same body weight and egg production, the R(+) chickens consume 40% more food than their counterparts R(-) lines. In the present study we sought to determine the hypothalamic expression profile of feeding-related neuropeptides in these lines maintained under fed or food-deprived conditions. In the fed condition, the suppressor of cytokine signaling 3 (SOCS3) was 17-fold lower (P<0.05) and the ghrelin receptor was 7-fold higher (P<0.05) in R(+) compared to R(-) chicken lines. The hypothalamic expression of the other studied genes remained unchanged between the two lines. In the fasted state, orexigenic neuropeptide Y and agouti-related peptide were more responsive, with higher significant levels in the R(+) compared to R(-) chickens, while no significant differences were seen for the anorexigenic neuropeptides pro-opiomelanocortin and corticotropin releasing hormone. Interestingly, C-reactive protein, adiponectin receptor 1 and ghrelin receptor gene expression were significantly higher (12-, 2- and 3-folds, respectively), however ghrelin and melanocortin 5 receptor mRNA levels were lower (4- and 2-folds, P=0.05 and P=0.03, respectively) in R(+) compared to R(-) animals. We identified several key feeding-related genes that are differently expressed in the hypothalamus of R(+) and R(-) chickens and that might explain the difference in feed intake observed between the two lines. Published by Elsevier Ltd.

  6. Generation and gene expression profiling of 48 transcription-factor-inducible mouse embryonic stem cell lines

    PubMed Central

    Yamamizu, Kohei; Sharov, Alexei A.; Piao, Yulan; Amano, Misa; Yu, Hong; Nishiyama, Akira; Dudekula, Dawood B.; Schlessinger, David; Ko, Minoru S. H.

    2016-01-01

    Mouse embryonic stem cells (ESCs) can differentiate into a wide range – and possibly all cell types in vitro, and thus provide an ideal platform to study systematically the action of transcription factors (TFs) in cell differentiation. Previously, we have generated and analyzed 137 TF-inducible mouse ESC lines. As an extension of this “NIA Mouse ESC Bank,” we generated and characterized 48 additional mouse ESC lines, in which single TFs in each line could be induced in a doxycycline-controllable manner. Together, with the previous ESC lines, the bank now comprises 185 TF-manipulable ESC lines (>10% of all mouse TFs). Global gene expression (transcriptome) profiling revealed that the induction of individual TFs in mouse ESCs for 48 hours shifts their transcriptomes toward specific differentiation fates (e.g., neural lineages by Myt1 Isl1, and St18; mesodermal lineages by Pitx1, Pitx2, Barhl2, and Lmx1a; white blood cells by Myb, Etv2, and Tbx6, and ovary by Pitx1, Pitx2, and Dmrtc2). These data also provide and lists of inferred target genes of each TF and possible functions of these TFs. The results demonstrate the utility of mouse ESC lines and their transcriptome data for understanding the mechanism of cell differentiation and the function of TFs. PMID:27150017

  7. A bipolar outflow of ionized gas in K3-50A: H76 alpha radio recombination line and continuum observations of K3-50

    NASA Technical Reports Server (NTRS)

    Depree, C. G.; Goss, W. M.; Palmer, Patrick; Rubin, Robert H.

    1994-01-01

    The H II regions near K3-50 (G70.3 + 1.6) have been imaged at high angular resolution (approximately 1 sec .3) in the continuum and the recombination lines H76(sub alpha and He76(sub alpha) using the Very Large Array (VLA). The helium line is detected in only the brightest component K3-50A while the hydrogen line is detected in three components (K3-50A, B and C1). K3-50A shows a pronounced velocity gradient of approximately 150 km/sec/pc along its major axis (P.A. = 160 deg); in addition a wide range of line widths are observed, from 20 to 65 km/sec. Kinematics from the line data and the morphology of the continuum emission suggest that the ionized material associated with K3-50A is undergoing a high-velocity bipolar outflow.

  8. A bipolar outflow of ionized gas in K3-50A: H76 alpha radio recombination line and continuum observations of K3-50

    NASA Technical Reports Server (NTRS)

    Depree, C. G.; Goss, W. M.; Palmer, Patrick; Rubin, Robert H.

    1994-01-01

    The H II regions near K3-50 (G70.3 + 1.6) have been imaged at high angular resolution (approximately 1 sec .3) in the continuum and the recombination lines H76(sub alpha and He76(sub alpha) using the Very Large Array (VLA). The helium line is detected in only the brightest component K3-50A while the hydrogen line is detected in three components (K3-50A, B and C1). K3-50A shows a pronounced velocity gradient of approximately 150 km/sec/pc along its major axis (P.A. = 160 deg); in addition a wide range of line widths are observed, from 20 to 65 km/sec. Kinematics from the line data and the morphology of the continuum emission suggest that the ionized material associated with K3-50A is undergoing a high-velocity bipolar outflow.

  9. OBSERVATIONAL EVIDENCE FOR A CORRELATION BETWEEN MACROTURBULENT BROADENING AND LINE-PROFILE VARIATIONS IN OB SUPERGIANTS

    SciTech Connect

    Simon-Diaz, S.; Herrero, A.; Castro, N.; Uytterhoeven, K.; Puls, J.

    2010-09-10

    The spectra of O and B supergiants (Sgs) are known to be affected by a significant form of extra line broadening (usually referred to as macroturbulence) in addition to that produced by stellar rotation. Recent analyses of high-resolution spectra have shown that the interpretation of this line broadening as a consequence of large-scale turbulent motions would imply highly supersonic velocity fields in photospheric regions, making this scenario quite improbable. Stellar oscillations have been proposed as a likely alternative explanation. As part of a long-term observational project, we are investigating the macroturbulent broadening in O and B Sgs and its possible connection with spectroscopic variability phenomena and stellar oscillations. In this Letter, we present the first encouraging results of our project, namely, firm observational evidence for a strong correlation between the extra broadening and photospheric line-profile variations in a sample of 13 Sgs with spectral types ranging from O9.5 to B8.

  10. Temporal variations of solar-spectral-line profiles induced by the 5-minute photospheric oscillation

    SciTech Connect

    Gomez, M.T.; Marmolino, C.; Roberti, G.; Severino, G.

    1987-01-01

    The variations induced by the 5-min photospheric oscillation are simulated on the line profiles. A phase lag of the order of 150/degree/ between temperature and velocity wave perturbations can explain the observed differences between the oscillations of the line flanks at residual intensity levels I/I/sub c/ < 0.7. Such a phase relation in the 5-min oscillation differs from that of the adiabatic case in which the temperature and pressure fluctuations are 90/degrees/ out of phase with respect to the velocity. A simple model of radiative damping in the solar photosphere can produce the required phase lag between temperature and velocity. The granulation can affect differentially the oscillations of the line flanks. This effect, however, does not fit the observed behavior of the flank oscillations.

  11. On the line profiles in the spectra of the zodiacal light.

    NASA Astrophysics Data System (ADS)

    Clarke, D.; Matthews, S. A.; Mundell, C. G.; Weir, A. S.

    1996-04-01

    The model proposed by Hong (1985) describing the surface brightness variation with elongation of the Zodiacal Light has been applied to predict the spectral line profiles produced by Doppler effects associated with scattering from interplanetary dust for the simple case of prograde Keplerian orbits. Over the greater elongation range, the predictions are substantially the same as for previous models but with shallower line depths and more pronounced asymmetries. At elongations ~30deg and less, however, Hong's mixture of phase angle scattering functions predicts bifurcation of the lines so providing an alternative explanation to the two dust stream model of Beavers et al. (1980) proposed as the interpretation of their spectra of the F corona. The work also highlights a general problem of using radial velocity correlation masks for investigations of Zodiacal Light spectra.

  12. Single Cell Profiling of Circulating Tumor Cells: Transcriptional Heterogeneity and Diversity from Breast Cancer Cell Lines

    PubMed Central

    Coram, Marc A.; Reddy, Anupama; Deng, Glenn; Telli, Melinda L.; Advani, Ranjana H.; Carlson, Robert W.; Mollick, Joseph A.; Sheth, Shruti; Kurian, Allison W.; Ford, James M.; Stockdale, Frank E.; Quake, Stephen R.; Pease, R. Fabian; Mindrinos, Michael N.; Bhanot, Gyan; Dairkee, Shanaz H.; Davis, Ronald W.; Jeffrey, Stefanie S.

    2012-01-01

    Background To improve cancer therapy, it is critical to target metastasizing cells. Circulating tumor cells (CTCs) are rare cells found in the blood of patients with solid tumors and may play a key role in cancer dissemination. Uncovering CTC phenotypes offers a potential avenue to inform treatment. However, CTC transcriptional profiling is limited by leukocyte contamination; an approach to surmount this problem is single cell analysis. Here we demonstrate feasibility of performing high dimensional single CTC profiling, providing early insight into CTC heterogeneity and allowing comparisons to breast cancer cell lines widely used for drug discovery. Methodology/Principal Findings We purified CTCs using the MagSweeper, an immunomagnetic enrichment device that isolates live tumor cells from unfractionated blood. CTCs that met stringent criteria for further analysis were obtained from 70% (14/20) of primary and 70% (21/30) of metastatic breast cancer patients; none were captured from patients with non-epithelial cancer (n = 20) or healthy subjects (n = 25). Microfluidic-based single cell transcriptional profiling of 87 cancer-associated and reference genes showed heterogeneity among individual CTCs, separating them into two major subgroups, based on 31 highly expressed genes. In contrast, single cells from seven breast cancer cell lines were tightly clustered together by sample ID and ER status. CTC profiles were distinct from those of cancer cell lines, questioning the suitability of such lines for drug discovery efforts for late stage cancer therapy. Conclusions/Significance For the first time, we directly measured high dimensional gene expression in individual CTCs without the common practice of pooling such cells. Elevated transcript levels of genes associated with metastasis NPTN, S100A4, S100A9, and with epithelial mesenchymal transition: VIM, TGFß1, ZEB2, FOXC1, CXCR4, were striking compared to cell lines. Our findings demonstrate that profiling CTCs

  13. Identification of circadian-related gene expression profiles in entrained breast cancer cell lines.

    PubMed

    Gutiérrez-Monreal, Miguel A; Treviño, Victor; Moreno-Cuevas, Jorge E; Scott, Sean-Patrick

    2016-01-01

    Cancer cells have broken circadian clocks when compared to their normal tissue counterparts. Moreover, it has been shown in breast cancer that disruption of common circadian oscillations is associated with a more negative prognosis. Numerous studies, focused on canonical circadian genes in breast cancer cell lines, have suggested that there are no mRNA circadian-like oscillations. Nevertheless, cancer cell lines have not been extensively characterized and it is unknown to what extent the circadian oscillations are disrupted. We have chosen representative non-cancerous and cancerous breast cell lines (MCF-10A, MCF-7, ZR-75-30, MDA-MB-231 and HCC-1954) in order to determine the degree to which the circadian clock is damaged. We used serum shock to synchronize the circadian clocks in culture. Our aim was to initially observe the time course of gene expression using cDNA microarrays in the non-cancerous MCF-10A and the cancerous MCF-7 cells for screening and then to characterize specific genes in other cell lines. We used a cosine function to select highly correlated profiles. Some of the identified genes were validated by quantitative polymerase chain reaction (qPCR) and further evaluated in the other breast cancer cell lines. Interestingly, we observed that breast cancer and non-cancerous cultured cells are able to generate specific circadian expression profiles in response to the serum shock. The rhythmic genes, suggested via microarray and measured in each particular subtype, suggest that each breast cancer cell type responds differently to the circadian synchronization. Future results could identify circadian-like genes that are altered in breast cancer and non-cancerous cells, which can be used to propose novel treatments. Breast cell lines are potential models for in vitro studies of circadian clocks and clock-controlled pathways.

  14. [OI] and OH line profiles from proplyds in Orion and the Carina nebulae

    NASA Astrophysics Data System (ADS)

    Vicente, Silvia

    2014-10-01

    Proplyds are a special class of low-mass young stellar objects (YSOs) modulated by the external environment. They are found embedded within or near a HII region and are identified by their typical cometary photoionized envelopes. The photoevaporation of these disks determines their lifetime and hence their potential as planetary nurseries. We have conducted a Herschel survey of a sample of 3 proplyds in the Orion and Carina nebulae with the PACS and HIFI instruments with the goal of understanding the photoevaporation process in these objects. The [OI]63 line was detected with PACS in the Carina proplyd but failed in Orion due to the high nebular emission. With HIFI we could spectrally resolve the emission from the proplyd and the nebula for all sources in the [CII]157 line. Here we propose to observe a sample of 4 proplyds in the [OI]63 line with the GREAT instrument on SOFIA. A spectral resolution better than 0.2 km/s and a SNR of 10 will resolve the line profile and separate it from the stronger nebula emission. The line profile will allow to establish the origin of the [OI]63 emission, if from the disk, a jet, or both, and to set strong constraints on the physical conditions and excitation processes of the gas (shocks vs. UV). In addition, we also want to confirm the detection of OH in the proplyd 244-440 and conduct a pilot survey of OH in the other proplyds. We will use the OH163 line covered by GREAT in Cycle3.

  15. In vitro cytotoxicity of human recombinant tumor necrosis factor alpha in association with radiotherapy in a human ovarian carcinoma cell line

    SciTech Connect

    Manetta, A.; Lucci, J.; Soopikian, J.; Granger, G.; Berman, M.L.; DiSaia, P.J. )

    1990-08-01

    It has been speculated that tumor necrosis factor alpha (TNF-alpha) may decrease the cytotoxicity of radiotherapy by increasing the scavenging of toxic superoxide radicals. Because of the possible clinical implications, the cytotoxicity of TNF-alpha in combination with radiotherapy (RT) was compared with that of RT alone in a human ovarian cancer cell line. NIH:OVCAR-3 cells were incubated with TNF-alpha at 10.0, 1.0, 0.1, and 0.01 microgram/ml. Plates were divided into two groups; one received 150 cGy of radiotherapy and the other received no further therapy. Seventy-two hours later, supernatants were aspirated and viable cells were stained with a 1% solution of crystal violet. Survival of cells treated with RT plus TNF-alpha was expressed as a percentage of surviving irradiated controls. Analysis of results revealed minimal additive cell killing effect between TNF-alpha and radiotherapy at all concentrations of tumor necrosis factor, with the greatest difference noted in the group treated with 10 micrograms/ml TNF-alpha. A continued radiotherapy dose-response study with TNF-alpha showed a similar additive, not radioprotective, effect. This may have implication as a potentiator of RT in some human tumors.

  16. Electron Collision Shift of the Lyman-Alpha Line in H and He+

    DTIC Science & Technology

    1988-09-09

    transitions for He+ and H for the electron density N =1017 cm -3 following the method of Boercker and22 e Iglesias . If we add these contributions to the...Rev. (1988). 20 22. D.B. Boercker and C.A. Iglesias , Phys. Rev. A 30, 2771 (1984). 23. K. Gruetzmacher and B. Wende, Spectral Line Shapes 4, 58 (1987...University Univ. of Kansas Baltimore, MD 21318 Lawrence, KS 66045 P. Bakshi David A. Clark Dept. of Physics and Univ. of New Mexico Center for Energy

  17. Proteome profiling of human epithelial ovarian cancer cell line TOV-112D.

    PubMed

    Gagné, Jean-Philippe; Gagné, Pierre; Hunter, Joanna M; Bonicalzi, Marie-Eve; Lemay, Jean-François; Kelly, Isabelle; Le Page, Cécile; Provencher, Diane; Mes-Masson, Anne-Marie; Droit, Amaud; Bourgais, David; Poirier, Guy G

    2005-07-01

    A proteome profiling of the epithelial ovarian cancer cell line TOV-112D was initiated as a protein expression reference in the study of ovarian cancer. Two complementary proteomic approaches were used in order to maximise protein identification: two-dimensional gel electrophoresis (2DE) protein separation coupled to matrix assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF MS) and one-dimensional gel electrophoresis (1DE) coupled to liquid-chromatography tandem mass spectrometry (LC MS/MS). One hundred and seventy-two proteins have been identified among 288 spots selected on two-dimensional gels and a total of 579 proteins were identified with the 1DE LC MS/MS approach. This proteome profiling covers a wide range of protein expression and identifies several proteins known for their oncogenic properties. Bioinformatics tools were used to mine databases in order to determine whether the identified proteins have previously been implicated in pathways associated with carcinogenesis or cell proliferation. Indeed, several of the proteins have been reported to be specific ovarian cancer markers while others are common to many tumorigenic tissues or proliferating cells. The diversity of proteins found and their association with known oncogenic pathways validate this proteomic approach. The proteome 2D map of the TOV-112D cell line will provide a valuable resource in studies on differential protein expression of human ovarian carcinomas while the 1DE LC MS/MS approach gives a picture of the actual protein profile of the TOV-112D cell line. This work represents one of the most complete ovarian protein expression analysis reports to date and the first comparative study of gene expression profiling and proteomic patterns in ovarian cancer.

  18. Recommendation of short tandem repeat profiling for authenticating human cell lines, stem cells, and tissues

    PubMed Central

    Barallon, Rita; Bauer, Steven R.; Butler, John; Capes-Davis, Amanda; Dirks, Wilhelm G.; Furtado, Manohar; Kline, Margaret C.; Kohara, Arihiro; Los, Georgyi V.; MacLeod, Roderick A. F.; Masters, John R. W.; Nardone, Mark; Nardone, Roland M.; Nims, Raymond W.; Price, Paul J.; Reid, Yvonne A.; Shewale, Jaiprakash; Sykes, Gregory; Steuer, Anton F.; Storts, Douglas R.; Thomson, Jim; Taraporewala, Zenobia; Alston-Roberts, Christine; Kerrigan, Liz

    2010-01-01

    Cell misidentification and cross-contamination have plagued biomedical research for as long as cells have been employed as research tools. Examples of misidentified cell lines continue to surface to this day. Efforts to eradicate the problem by raising awareness of the issue and by asking scientists voluntarily to take appropriate actions have not been successful. Unambiguous cell authentication is an essential step in the scientific process and should be an inherent consideration during peer review of papers submitted for publication or during review of grants submitted for funding. In order to facilitate proper identity testing, accurate, reliable, inexpensive, and standardized methods for authentication of cells and cell lines must be made available. To this end, an international team of scientists is, at this time, preparing a consensus standard on the authentication of human cells using short tandem repeat (STR) profiling. This standard, which will be submitted for review and approval as an American National Standard by the American National Standards Institute, will provide investigators guidance on the use of STR profiling for authenticating human cell lines. Such guidance will include methodological detail on the preparation of the DNA sample, the appropriate numbers and types of loci to be evaluated, and the interpretation and quality control of the results. Associated with the standard itself will be the establishment and maintenance of a public STR profile database under the auspices of the National Center for Biotechnology Information. The consensus standard is anticipated to be adopted by granting agencies and scientific journals as appropriate methodology for authenticating human cell lines, stem cells, and tissues. PMID:20614197

  19. Two distinct T-cell receptor alpha-chain transcripts in a rabbit T-cell line: implications for allelic exclusion in T cells.

    PubMed Central

    Marche, P N; Kindt, T J

    1986-01-01

    Information relevant to allelic exclusion in T cells has been obtained by a study of cDNA clones corresponding to alpha-chain genes of the T-cell receptor in the rabbit T-cell line RL-5. One clone contains a variable-joining-constant (VJC) sequence encoding a complete alpha chain of the T-cell receptor. A second has an identical constant region and includes a distinct variable-joining (VJ) sequence. However, a single-base deletion in the variable region places the remainder of the second transcript out-of-phase and appears to be the product of a rearrangement involving a variable region of the T-cell receptor alpha-chain pseudogene. Presence of two variable-joining-constant (VJC) transcripts in the same cell line indicates that alpha-chain gene rearrangement is not affected by transcription of a complete alpha-chain mRNA and suggests that steps after mRNA synthesis are involved in the allelic exclusion process for alpha-chain genes. Comparison of rabbit alpha-chain sequences with those of man and mouse revealed interspecies conservation in constant and variable regions. Genomic Southern blot analyses using a rabbit constant region of the T-cell receptor alpha-chain probe revealed the presence of a single constant region gene. Hybridization with variable region probes defined two distinct multigenic subfamilies. Homology between certain rabbit and murine variable regions of the T-cell receptor alpha-chain sequences suggests that the existence of subfamilies predated divergence of these species. Images PMID:3485798

  20. Oscillations of the sun's chromosphere. II - H-alpha line centre and wing filtergram time sequences

    NASA Astrophysics Data System (ADS)

    Kneer, F.; von Uexkuell, M.

    1985-03-01

    In order to investigate the dynamics of the solar chromosphere we perform a Fourier analysis of time sequences (total duration 128 min) of Hα photographic filtergrams taken simultaneously at disc centre in line centre and ±0.5 Å from the line centre. The results are: (i) At low frequencies (periods >450 s) the brightness fluctuations are caused by the temporal evolution of Hα structures at the boundaries of the chromospheric network. We observe that much of the coarse chromospheric structure survives the 128 min time span. We derive lifetimes of 2-8 min for the small-scale structure and 5-20 min for the larger structures. (ii) The modal structure of the 5 min oscillation is clearly visible in the power spectra of the three filtergram. The fundamental (f) mode can be followed to high horizontal wavenumbers kh ≍3.7 Mm-1 and follows the expected relationship ω2f = gkh, where g is the surface gravity. (iii) A chromospheric resonant mode cannot be found in the k - ω plane. (iv) The higher resonant p modes reach into the acoustic wave domain (periods T ≍ 150 s) and thus require the transition zone as the upper reflecting layer. (v) We find no evidence for internal gravity waves. (vi) From a coherence and phase analysis we conclude that the brightness fluctuations of the chromospheric structure seen in -0.5 Å lead those in +0.5 Å by 2 min at kh =2 Mm -1 and by 4 min at kh =0.5 Mm-1. (vii) From the same coherence and phase analysis we can identify acoustic waves in the solar atmosphere with periods as short as 80 s. They possess as much power as the 5 min oscillations and are seen better outside the chromospheric network than within the network. (viii) The phase difference between intensity in Hα line centre and velocity, constructed from the two Hα wing filtergrams, decreases from about 90° at low frequencies and high wavenumbers to 0° at high frequencies and low wavenumbers. Tentatively we interpret this as a change from mainly standing waves for the low

  1. Alpha2-adrenoreceptors profile modulation. 3.1 (R)-(+)-m-nitrobiphenyline, a new efficient and alpha2C-subtype selective agonist.

    PubMed

    Crassous, Pierre-Antoine; Cardinaletti, Claudia; Carrieri, Antonio; Bruni, Bruno; Di Vaira, Massimo; Gentili, Francesco; Ghelfi, Francesca; Giannella, Mario; Paris, Hervé; Piergentili, Alessandro; Quaglia, Wilma; Schaak, Stéphane; Vesprini, Cristian; Pigini, Maria

    2007-08-09

    To assess the stereochemical requirements for efficient alpha2C-adrenoreceptor activation, the enantiomeric forms of m-nitrobiphenyline [(+/-)-5] were prepared and tested on cells expressing the human alpha2-adrenoreceptor subtypes. The importance of chirality was confirmed, since the enantiomer (R)-(+)-5 was much more efficient than (S)-(-)-5 in producing alpha2C-activation. Surprising reversal of enantioselectivity was observed with respect to structurally similar biphenyline [(+/-)-1] whose (S)-(-)-form proved the preferred alpha2C-configuration.

  2. Increased proteasome-dependent degradation of estrogen receptor-alpha by TGF-beta1 in breast cancer cell lines.

    PubMed

    Petrel, Trevor A; Brueggemeier, Robert W

    2003-01-01

    Normal mammary epithelial cells are rapidly induced to G(1) arrest by the widely expressed cytokine, transforming growth factor beta (TGF-beta1). Studies in established breast cancer cell lines that express the estrogen receptor alpha (ERalpha) have demonstrated loss of this responsiveness. This inverse correlation suggests interpathway signaling important to cell growth and regulation. The adenocarcinoma breast cell line BT474, which was not growth arrested by TGF-beta1, was used as a model of estrogen-inducible growth to explore interpathway crosstalk. Although BT474 cells were not growth-arrested by TGF-beta1 as determined by flow cytometry analysis and 5'-bromo-3'-deoxyuridine incorporation into DNA, estrogen receptor protein levels were attenuated by 100 pM TGF-beta1 after 6 h. This decrease in ERalpha reached 50% of untreated control levels by 24 h of treatment and was further supported by a 50% decrease in estrogen-inducible DNA synthesis. Inspection of ERalpha transcripts suggested that this decrease was primarily the result of altered ERalpha protein stability or availability. Use of the proteasome inhibitor, MG132, abolished all effects on ERalpha by TGF-beta1. Collectively, this data supports a role for TGF-beta1 in regulating the growth of otherwise insensitive breast cancer cells through modulation of ERalpha stability. Copyright 2002 Wiley-Liss, Inc.

  3. Increased Proteasome-Dependent Degradation of Estrogen Receptor-Alpha by TGF-β1 in Breast Cancer Cell Lines

    PubMed Central

    Petrel, Trevor A.; Brueggemeier, Robert W.

    2008-01-01

    Normal mammary epithelial cells are rapidly induced to G1 arrest by the widely expressed cytokine, transforming growth factor beta (TGF-β1). Studies in established breast cancer cell lines that express the estrogen receptor alpha (ERα) have demonstrated loss of this responsiveness. This inverse correlation suggests interpathway signaling important to cell growth and regulation. The adenocarcinoma breast cell line BT474, which was not growth arrested by TGF-β1, was used as a model of estrogen-inducible growth to explore interpathway crosstalk. Although BT474 cells were not growth-arrested by TGF-β1 as determined by flow cytometry analysis and 5′-bromo-3′-deoxyuridine incorporation into DNA, estrogen receptor protein levels were attenuated by 100 pM TGF-β1 after 6 h. This decrease in ERα reached 50% of untreated control levels by 24 h of treatment and was further supported by a 50% decrease in estrogen-inducible DNA synthesis. Inspection of ERα transcripts suggested that this decrease was primarily the result of altered ERα protein stability or availability. Use of the proteasome inhibitor, MG132, abolished all effects on ERα by TGF-β1. Collectively, this data supports a role for TGF-β1 in regulating the growth of otherwise insensitive breast cancer cells through modulation of ERα stability. PMID:12461787

  4. Homozygous deletion of the. alpha. - and. beta. sub 1 -interferon genes in human leukemia and derived cell lines

    SciTech Connect

    Diaz, M.O.; Ziemin, S.; Le Beau, M.M.; Pitha, P.; Smith, S.D.; Chilcote, R.R.; Rowley, J.D. )

    1988-07-01

    The loss of bands p21-22 from one chromosome 9 homologue as a consequence of a deletion of the short arm (del(9p)), unbalanced translocation, or monosomy 9 is frequently observed in the malignant cells of patients with lymphoid neoplasias, including acute lymphoblastic leukemia and non-Hodgkin lymphoma. The {alpha}- and {beta}{sub 1}-interferon genes have been assigned to this chromosome region (9p21-22). The authors now present evidence of the homozygous deletion of the interferon genes in neoplastic hematopoietic cell lines and primary leukemia cells in the presence or absence of chromosomal deletions that are detectable at the level of the light microscope. In these cell lines, the deletion of the interferon genes is accompanied by a deficiency of 5{prime}-methylthioadenosine phosphorylase, an enzyme of purine metabolism. These homozygous deletions may be associated with the loss of a tumor-suppressor gene that is involved in the development of these neoplasias. The relevant genes may be either the interferon genes themselves or a gene that has a tumor-suppressor function and is closely linked to them.

  5. Line-profile variations in radial-velocity measurements. Two alternative indicators for planetary searches

    NASA Astrophysics Data System (ADS)

    Figueira, P.; Santos, N. C.; Pepe, F.; Lovis, C.; Nardetto, N.

    2013-09-01

    Aims: We introduce two methods to identify false-positive planetary signals in the context of radial-velocity exoplanet searches. The first is the bi-Gaussian cross-correlation function fitting (and monitoring of the parameters derived from it), and the second is the measurement of asymmetry in radial-velocity spectral line information content, Vasy. We assess the usefulness of each of these methods by comparing their results with those delivered by current indicators. Methods: We make a systematic analysis of the most used common line profile diagnosis, Bisector Inverse Slope and Velocity Span, along with the two proposed ones. We evaluate all these diagnosis methods following a set of well-defined common criteria and using both simulated and real data. We apply them to simulated cross-correlation functions that are created with the program SOAP and which are affected by the presence of stellar spots. We consider different spot properties on stars with different rotation profiles and simulate observations as obtained with high-resolution spectrographs. We then apply our methodology to real cross-correlation functions, which are computed from HARPS spectra, for stars with a signal originating in activity (thus spots) and for those with a signal rooted on a planet. Results: We demonstrate that the bi-Gaussian method allows a more precise characterization of the deformation of line profiles than the standard bisector inverse slope. The calculation of the deformation indicator is simpler and its interpretation more straightforward. More importantly, its amplitude can be up to 30% larger than that of the bisector span, allowing the detection of smaller-amplitude correlations with radial-velocity variations. However, a particular parametrization of the bisector inverse slope is shown to be more efficient on high-signal-to-noise data than both the standard bisector and the bi-Gaussian. The results of the Vasy method show that this indicator is more effective than any of

  6. Assessment of a systematic expression profiling approach in ENU-induced mouse mutant lines.

    PubMed

    Seltmann, Matthias; Horsch, Marion; Drobyshev, Alexei; Chen, Yali; de Angelis, Martin Hrabé; Beckers, Johannes

    2005-01-01

    Comparative genomewide expression profiling is a powerful tool in the effort to annotate the mouse genome with biological function. The systematic analysis of RNA expression data of mouse lines from the Munich ENU mutagenesis screen might support the understanding of the molecular biology of such mutants and provide new insights into mammalian gene function. In a direct comparison of DNA microarray experiments of individual versus pooled RNA samples of organs from ENU-induced mouse mutants, we provide evidence that individual RNA samples may outperform pools in some aspects. Genes with high biological variability in their expression levels (noisy genes) are identified as false positives in pooled samples. Evidence suggests that highly stringent housing conditions and standardized procedures for the isolation of organs significantly reduce biological variability in gene expression profiling experiments. Data on wild-type individuals demonstrate the positive effect of controlling variables such as social status, food intake before organ sampling, and stress with regard to reproducibility of gene expression patterns. Analyses of several organs from various ENU-induced mutant lines in general show low numbers of differentially expressed genes. We demonstrate the feasibility to detect transcriptionally affected organs employing RNA expression profiling as a tool for molecular phenotyping.

  7. Activity Profile of International Rugby Sevens: Effect of Score Line, Opponent, and Substitutes.

    PubMed

    Murray, Andrew M; Varley, Matthew C

    2015-09-01

    To investigate the influence of score line, level of opposition, and timing of substitutes on the activity profile of rugby sevens players and describe peak periods of activity. Velocity and distance data were measured via 10-Hz GPS from 17 international-level male rugby sevens players on 2-20 occasions over 4 tournaments (24 matches). Movement data were reported as total distance (TD), high-speed-running distance (HSR, 4.17-10.0 m/s), and the occurrence of maximal accelerations (Accel, ≥2.78 m/s2). A rolling 1-min sample period was used. Regardless of score line or opponent ranking there was a moderate to large reduction in average and peak TD and HSR between match halves. A close halftime score line was associated with a greater HSR distance in the 1st minute of the 1st and 2nd halves compared with when winning. When playing against higher- compared with lower-ranked opposition, players covered moderately greater TD in the 1st minute of the 1st half (difference = 26%; 90% confidence limits = 6, 49). Compared with players who played a full match, substitutes who came on late in the 2nd half had a higher average HSR and Accel by a small magnitude (31%; 5, 65 vs 34%; 6, 69) and a higher average TD by a moderate magnitude (16%; 5, 28). Match score line, opposition, and substitute timing can influence the activity profile of rugby sevens players. Players are likely to perform more running against higher opponents and when the score line is close. This information may influence team selection.

  8. Apparent sizes and spectral line profiles for spherical ('three-dimensional') astrophysical masers

    NASA Technical Reports Server (NTRS)

    Emmering, Robert T.; Watson, William D.

    1994-01-01

    Calculations are performed for the frequency-dependent transport of radiation in a uniform spherical maser. Coupling between the intensities at different frequencies is treated. Spherical masers are commonly utilized as idealized geometries in which to assess possible deviations (sometimes, 'three-dimensional effects') from the approximation of a linear geometry. We find that the spectral line profile rebroadens in approximately the same manner as that for a linear maser so that the relationship between the line breadth and the luminosity, beaming angle, and degree of saturation is essentially unchanged. The variation of the apparent size of a spherical maser with frequency is not found to be significant at frequencies within the line profile at which the intensity is appreciable. The 'standard approximation' is adequate for obtaining most of the basic properties of spherical masers that have been examined including the relationship between the pumping (or molecular populations) and the intensity of maser radiation. The improved methods employed here are, however, necessary to obtain variation of the apparent size with frequency in the saturated regime. These conclusions differ from those of previous investigators. The calculations here are more reliable than those of previous investigators because these are self-consistent and avoid certain inaccurate simplifications.

  9. Line profile variations in M giants - Clues to mass-loss and chromospheric heating mechanisms

    NASA Technical Reports Server (NTRS)

    Judge, P. G.; Luttermoser, D. G.; Neff, D. H.; Cuntz, M.; Stencel, R. E.

    1993-01-01

    Analysis is presented of time-series, high dispersion spectra of the Mg II, k, Ca II H, and K lines of the semiregular giants Rho Per (M4 II-III, periodicity of about 50 days), R Lyr (M5 III, period of about 46 days), and g Her (M6 III, period of about 90 days). The fine error sensor on the IUE satellite and ground based UBV photometry was used to relate line profile variations to photospheric variations. The above mentioned stars were selected to study the relative importance of convective motions and global stellar pulsations in determining the structure of the outer atmospheres. Small amplitude changes, but substantial changes in the profiles of Mg II and Ca II lines were detected. It is contended that the observed variability is due to changes in chromospheric conditions and not variations within the circumstellar shell. The picture of a steady state chromosphere, which is modulated on long time scales, is corroborated by these observations. Localized heating is found in g Her.

  10. Profiling of the Tox21 10K compound library for agonists and antagonists of the estrogen receptor alpha signaling pathway

    PubMed Central

    Huang, Ruili; Sakamuru, Srilatha; Martin, Matt T.; Reif, David M.; Judson, Richard S.; Houck, Keith A.; Casey, Warren; Hsieh, Jui-Hua; Shockley, Keith R.; Ceger, Patricia; Fostel, Jennifer; Witt, Kristine L.; Tong, Weida; Rotroff, Daniel M.; Zhao, Tongan; Shinn, Paul; Simeonov, Anton; Dix, David J.; Austin, Christopher P.; Kavlock, Robert J.; Tice, Raymond R.; Xia, Menghang

    2014-01-01

    The U.S. Tox21 program has screened a library of approximately 10,000 (10K) environmental chemicals and drugs in three independent runs for estrogen receptor alpha (ERα) agonist and antagonist activity using two types of ER reporter gene cell lines, one with an endogenous full length ERα (ER-luc; BG1 cell line) and the other with a transfected partial receptor consisting of the ligand binding domain (ER-bla; ERα β-lactamase cell line), in a quantitative high-throughput screening (qHTS) format. The ability of the two assays to correctly identify ERα agonists and antagonists was evaluated using a set of 39 reference compounds with known ERα activity. Although both assays demonstrated adequate (i.e. >80%) predictivity, the ER-luc assay was more sensitive and the ER-bla assay more specific. The qHTS assay results were compared with results from previously published ERα binding assay data and showed >80% consistency. Actives identified from both the ER-bla and ER-luc assays were analyzed for structure-activity relationships (SARs) revealing known and potentially novel ERα active structure classes. The results demonstrate the feasibility of qHTS to identify environmental chemicals with the potential to interact with the ERα signaling pathway and the two different assay formats improve the confidence in correctly identifying these chemicals. PMID:25012808

  11. Study of nonstationarity of the atmosphere of κ Cas. I. Variability of profiles of photospheric and He I wind lines

    NASA Astrophysics Data System (ADS)

    Rzaev, A. Kh.

    2017-01-01

    Temporal variations of radial velocities and line profiles in the spectrum of the supergiant κ Cas were investigated. Variability of radial velocities and profiles of photospheric lines Si III, OII, He I, H10-Hδ and wind lines He I λ 5875, 6678 Å ismainly caused by non-radial pulsations. For photospheric lines quasisinusoidal variabilities of the radial velocity were found. Temporal variability of radial velocity of the wind lines He I λ 5875, 6678 A˚ differ from each other and from the photospheric lines. Gamma velocities and amplitudes of radial velocity variability were determined. The amplitude of variability and the velocity of expansion increase from lower to upper layers of the atmosphere. Emission components are superimposed on the line profiles at positions about -135 ± 10.0, -20 ± 20 and 135 ± 10.0 kms-1 respectively. They are more obvious in the wind line profiles, although, there are signs of emissions also in the photospheric lines. Such a character of variability of all the lines in the κ Cas spectrum confirms its Be nature.

  12. Human renal carcinoma line transfected with interleukin-2 and/or interferon alpha gene(s): implications for live cancer vaccines.

    PubMed

    Belldegrun, A; Tso, C L; Sakata, T; Duckett, T; Brunda, M J; Barsky, S H; Chai, J; Kaboo, R; Lavey, R S; McBride, W H

    1993-02-03

    Combination therapy with systemically administered interleukin-2 (IL-2) and interferon alpha (IFN-alpha) has resulted in long-term objective remissions in 30% of patients with metastatic renal cell carcinoma (RCC), but toxic effects are clinically significant. We have thus investigated an alternative therapeutic approach--continuous intratumoral production of IL-2 and/or IFN-alpha by a cytokine-transfected human RCC tumor cell line. Plasmid vectors were used to transfect the R11 RCC line with the genes for human IL-2 and/or IFN-alpha by the calcium phosphate precipitation method. Biologic characteristics of the cytokine-transfected tumor cells were determined by assays of thymidine incorporation and cytotoxicity, fluorescence-activated cell-sorter analysis, Northern blotting, and in vivo studies in C3Hf/Sed/Kam mice rendered T-cell deficient. The transfected cell lines produced the following amounts of cytokine per 10(6) cells per day: R11-IL-2 (220 U), R11-IFN-alpha (10,240 U), and R11-IL-2 + IFN-alpha (95 U + 1270 U, respectively). Gamma irradiation did not eliminate cytokine secretion. Morphology and growth rates were identical to those for the parental R11 cell line, except for IFN-alpha-producing clones, which showed significant growth inhibition. All cytokine-producing cells demonstrated increased susceptibility to cell killing by peripheral blood leukocytes (PBL). IFN-alpha producers exhibited enhanced HLA antigen expression and suppressed c-myc messenger RNA expression; when cocultured in vitro, they induced similar changes in parental R11 cells. IL-2 producers could stimulate growth and cytotoxicity of naive (i.e., freshly isolated, uncultured) and activated PBL. All cytokine-producing cells lost their tumorigenicity, as evidenced by failure to grow in the T-cell-depleted mice. When co-injected at a local site but not at a distant site, these cells prevented growth of parental R11 cells. Histologic examination of the injection sites revealed a substantial

  13. Persistence and costs with subcutaneous TNF-alpha inhibitors in immune-mediated rheumatic disease stratified by treatment line

    PubMed Central

    Svedbom, Axel; Dalén, Johan; Black, Christopher M; Kachroo, Sumesh

    2017-01-01

    Objectives The objectives of this study were to 1) describe and compare treatment persistence with first- and second-line subcutaneous tumor necrosis factor-alpha inhibitors (SC-TNFis) in patients with ankylosing spondylitis (AS), psoriatic arthritis (PsA), or rheumatoid arthritis (RA) (collectively immune-mediated rheumatic disease) in Sweden and 2) estimate and contrast health care costs in the two groups. Methods Patients who initiated their first or second SC-TNFi between May 6 2010 and December 12 2012 were identified from the Prescribed Drug Register. Persistence was estimated using survival analysis. Costs comprised specialized outpatient care, inpatient care, and medication. The persistence analysis was stratified by immune-mediated rheumatic disease diagnosis. Results A total of 4,903 patients treated with their first and 845 patients treated with their second SC-TNFi were identified. Baseline characteristics differed between the two groups. Therefore, propensity score matching analysis was implemented. Second-line patients were matched to first-line patients, and four cohort pairs (AS, PsA, RA, and all diagnoses combined) were generated. Patients treated with their first SC-TNFi had statistically significant higher persistence than patients treated with their second SC-TNFi in PsA (P=0.036), RA (P=0.048), and all diagnoses combined (P<0.001) but not in AS (P=0.741). Patients who were treated with their second SC-TNFi incurred higher costs than patients treated with their first SC-TNFi. Conclusion Overall, persistence to the first SC-TNFi was higher than persistence to the second SC-TNFi. Furthermore, the second SC-TNFi was associated with higher costs than the first SC-TNFi. Therefore, prescribing the SC-TNFi with the best long-term persistence first may be beneficial. PMID:28144130

  14. Persistence and costs with subcutaneous TNF-alpha inhibitors in immune-mediated rheumatic disease stratified by treatment line.

    PubMed

    Svedbom, Axel; Dalén, Johan; Black, Christopher M; Kachroo, Sumesh

    2017-01-01

    The objectives of this study were to 1) describe and compare treatment persistence with first- and second-line subcutaneous tumor necrosis factor-alpha inhibitors (SC-TNFis) in patients with ankylosing spondylitis (AS), psoriatic arthritis (PsA), or rheumatoid arthritis (RA) (collectively immune-mediated rheumatic disease) in Sweden and 2) estimate and contrast health care costs in the two groups. Patients who initiated their first or second SC-TNFi between May 6 2010 and December 12 2012 were identified from the Prescribed Drug Register. Persistence was estimated using survival analysis. Costs comprised specialized outpatient care, inpatient care, and medication. The persistence analysis was stratified by immune-mediated rheumatic disease diagnosis. A total of 4,903 patients treated with their first and 845 patients treated with their second SC-TNFi were identified. Baseline characteristics differed between the two groups. Therefore, propensity score matching analysis was implemented. Second-line patients were matched to first-line patients, and four cohort pairs (AS, PsA, RA, and all diagnoses combined) were generated. Patients treated with their first SC-TNFi had statistically significant higher persistence than patients treated with their second SC-TNFi in PsA (P=0.036), RA (P=0.048), and all diagnoses combined (P<0.001) but not in AS (P=0.741). Patients who were treated with their second SC-TNFi incurred higher costs than patients treated with their first SC-TNFi. Overall, persistence to the first SC-TNFi was higher than persistence to the second SC-TNFi. Furthermore, the second SC-TNFi was associated with higher costs than the first SC-TNFi. Therefore, prescribing the SC-TNFi with the best long-term persistence first may be beneficial.

  15. Toxicokinetic Profiles of Alpha-ketoglutarate Cyanohydrin, a Cyanide Detoxification Product, following Exposure to Potassium Cyanide

    DTIC Science & Technology

    2013-07-15

    tox le t Toxicokinetic profiles of -ketoglutarate cyanohydrin, a cyanide detoxification product, following exposure to potassium cyanide ...KgCN in swine was investigated. • Measuring plasma -KgCN provides definitive confirmation of cyanide exposure. • Treatment of... cyanide poisoning with cobinamide renders -KgCN an ineffective diagnostic marker. a r t i c l e i n f o Article history: Received 6 May

  16. Alpha-ketoglutarate dehydrogenase complex-dependent succinylation of proteins in neurons and neuronal cell lines

    PubMed Central

    Gibson, Gary E.; Xu, Hui; Chen, Huan-Lian; Chen, Wei; Denton, Travis; Zhang, Sheng

    2015-01-01

    Reversible post-translation modifications of proteins are common in all cells and appear to regulate many processes. Nevertheless, the enzyme(s) responsible for the alterations and the significance of the modification are largely unknown. Succinylation of proteins occurs and causes large changes in the structure of proteins; however, the source of the succinyl groups, the targets, and the consequences of these modifications on other proteins are unknown. These studies focused on succinylation of mitochondrial proteins. The results demonstrate that the α-ketoglutarate dehydrogenase complex (KGDHC) can serve as a trans-succinylase that mediates succinylation in an α-ketoglutarate-dependent manner. Inhibition of KGDHC reduced suc-cinylation of both cytosolic and mitochondrial proteins in cultured neurons and in a neuronal cell line. Purified KGDHC can succinylate multiple proteins including other enzymes of the tricarboxylic acid (TCA) cycle leading to modification of their activity. Inhibition of KGDHC also modifies acetylation by modifying the pyruvate dehydrogenase complex. The much greater effectiveness of KGDHC than succinyl CoA suggests that the catalysis due to the E2k suc-cinyltransferase is important. Succinylation appears to be a major signaling system and it can be mediated by KGDHC. PMID:25772995

  17. Bacterial cell wall products increases stabilization of HIF-1 alpha in an oligodendrocyte cell line preconditioned by cobalt chloride or desferrioxamine.

    PubMed

    Yao, Song-yi; Soutto, Mohammed; Sriram, Subramaniam

    2008-08-30

    We examined the effect of lipopolysaccharide (LPS) or lipotechoic acid (LTA) on the regulation of hypoxia inducible factor (HIF-1) alpha on the MO3.13 cells, a human oligodendroglial cell line. Our study shows that MO3.13 cells express the toll like receptors (TLR's) but do not increase cellular levels of HIF-1 alpha following exposure to bacterial cell wall products. When MO3.13 cells were preconditioned by desferrioxamine (DFO) or cobalt chloride (CoCl(2)) and then treated with either LPS or LTA, HIF-1 alpha levels were higher than that induced by DFO or CoCl(2) alone. The increase in HIF-1 alpha was due to increased protein stability that was mediated by activation of the ERK-MAP kinase pathway.

  18. Performance comparison of digital microRNA profiling technologies applied on human breast cancer cell lines.

    PubMed

    Knutsen, Erik; Fiskaa, Tonje; Ursvik, Anita; Jørgensen, Tor Erik; Perander, Maria; Lund, Eiliv; Seternes, Ole Morten; Johansen, Steinar D; Andreassen, Morten

    2013-01-01

    MicroRNA profiling represents an important first-step in deducting individual RNA-based regulatory function in a cell, tissue, or at a specific developmental stage. Currently there are several different platforms to choose from in order to make the initial miRNA profiles. In this study we investigate recently developed digital microRNA high-throughput technologies. Four different platforms were compared including next generation SOLiD ligation sequencing and Illumina HiSeq sequencing, hybridization-based NanoString nCounter, and miRCURY locked nucleic acid RT-qPCR. For all four technologies, full microRNA profiles were generated from human cell lines that represent noninvasive and invasive tumorigenic breast cancer. This study reports the correlation between platforms, as well as a more extensive analysis of the accuracy and sensitivity of data generated when using different platforms and important consideration when verifying results by the use of additional technologies. We found all the platforms to be highly capable for microRNA analysis. Furthermore, the two NGS platforms and RT-qPCR all have equally high sensitivity, and the fold change accuracy is independent of individual miRNA concentration for NGS and RT-qPCR. Based on these findings we propose new guidelines and considerations when performing microRNA profiling.

  19. On the reliability of powder diffraction Line Profile Analysis of plastically deformed nanocrystalline systems

    PubMed Central

    Rebuffi, Luca; Troian, Andrea; Ciancio, Regina; Carlino, Elvio; Amimi, Amine; Leonardi, Alberto; Scardi, Paolo

    2016-01-01

    An iron-molybdenum alloy powder was extensively deformed by high energy milling, so to refine the bcc iron domain size to nanometer scale (~10 nm) and introduce a strong inhomogeneous strain. Both features contribute to comparable degree to the diffraction peak profile broadening, so that size and strain contributions can be easily separated by exploiting their different dependence on the diffraction angle. To assess the reliability of Line Profile Analysis, results were compared with evidence from other techniques, including scanning and transmission electron microscopy and X-ray small angle scattering. Results confirm the extent of the size broadening effect, whereas molecular dynamics simulations provide insight into the origin of the local atomic, inhomogeneous strain, pointing out the role of dislocations, domain boundaries and interactions among crystalline domains. PMID:26860471

  20. Inhibition of growth of human tumor cell lines in nude mice by an antisense of oligonucleotide inhibitor of protein kinase C-alpha expression.

    PubMed

    Dean, N; McKay, R; Miraglia, L; Howard, R; Cooper, S; Giddings, J; Nicklin, P; Meister, L; Ziel, R; Geiger, T; Muller, M; Fabbro, D

    1996-08-01

    A 20-mer phosphorothioate oligodeoxynucleotide (ISIS 3521) designed to hybridize sequences in the 3'-untranslated region of human protein kinase C-alpha (PKC-alpha) mRNA has been shown to inhibit the expression of PKC-alpha in multiple human cell lines. In human bladder carcinoma (T-24) cells, inhibition of PKC-alpha was both concentration dependent and oligonucleotide sequence specific. ISIS 3521 had a IC50 of 50-100 nM for PKC-alpha mRNA reduction and was without effect on the expression of other members of the PKC family of genes (PKC-eta and zeta). Toxicity studies in mice revealed that the oligodeoxynucleotide was well tolerated at repeat doses of 100 mg/kg i.v. for up to 14 days, with no acute toxicity apparent. The oligodeoxynucleotide was found to also inhibit the growth of three different human tumor cell lines, the T-24 bladder, human lung carcinoma (A549), and Colo 205 colon carcinoma grown in nude mice. The inhibition was dose dependent with ID50 values for the growth inhibition between 0.06 and 0.6 mg/kg daily when given i.v., depending on the cell line examined. Three control phosphorothioate oligodeoxynucleotides not targeting human PKC-alpha were without effect on the growth of the tumors at doses as high as 6 mg/kg. Recovery of ISIS 3521 from tumor tissue and resolution by capillary gel electrophoresis revealed that 24 It after the final dose of oligodeoxynucleotide, intact, full-length 20-mer material was present as well as some apparent exonuclease degradation products (e.g., n-1 and n-2 mers). These studies demonstrate the in vivo antitumor effects of an antisense oligodeoxynucleotide targeting PKC-alpha and suggest that this compound may be of value as a chemotherapeutic agent in the treatment of human cancers.

  1. Intracellular modifiers of integrin alpha 6p production in aggressive prostate and breast cancer cell lines.

    PubMed

    Kacsinta, Apollo D; Rubenstein, Cynthia S; Sroka, Isis C; Pawar, Sangita; Gard, Jaime M; Nagle, Raymond B; Cress, Anne E

    2014-11-14

    Cancer metastasis is a multi-step process in which tumor cells gain the ability to invade beyond the primary tumor and colonize distant sites. The mechanisms regulating the metastatic process confer changes to cell adhesion receptors including the integrin family of receptors. Our group previously discovered that the α6 integrin (ITGA6/CD49f) is post translationally modified by urokinase plasminogen activator (uPA) and its receptor, urokinase plasminogen activator receptor (uPAR), to form the variant ITGA6p. This variant of ITGA6 is a cleaved form of the receptor that lacks the ligand-binding domain. Although it is established that the uPA/uPAR axis drives ITGA6 cleavage, the mechanisms regulating cleavage have not been defined. Intracellular integrin dependent "inside-out" signaling is a major regulator of integrin function and the uPA/uPAR axis. We hypothesized that intracellular signaling molecules play a role in formation of ITGA6p to promote cell migration during cancer metastasis. In order to test our hypothesis, DU145 and PC3B1 prostate cancer and MDA-MB-231 breast cancer cell lines were treated with small interfering RNA targeting actin and the intracellular signaling regulators focal adhesion kinase (FAK), integrin linked kinase (ILK), and paxillin. The results demonstrated that inhibition of actin, FAK, and ILK expression resulted in significantly increased uPAR expression and ITGA6p production. Inhibition of actin increased ITGA6p, although inhibition of paxillin did not affect ITGA6p formation. Taken together, these results suggest that FAK and ILK dependent "inside-out" signaling, and actin dynamics regulate extracellular production of ITGA6p and the aggressive phenotype. Copyright © 2014 Elsevier Inc. All rights reserved.

  2. X-ray diffraction line profile analysis of KBr thin films

    NASA Astrophysics Data System (ADS)

    Rai, R.; Triloki, Triloki; Singh, B. K.

    2016-08-01

    In the present work, the microcrystalline characteristics of KBr thin films have been investigated by evaluating the breadth of diffraction peak. The Williamson-Hall, the Size-Strain plot and the single-line Voigt methods are employed to deconvolute the finite crystallite size and microstrain contribution from the broaden X-ray profile. The texture coefficient and dislocation density have been determined along each diffraction peak. Other relevant physical parameters such as stress, Young's modulus and energy density are also estimated using uniform stress deformation and uniform deformation energy density approximation of Williamson-Hall method.

  3. Inversion for Sound Speed Profile by Using a Bottom Mounted Horizontal Line Array in Shallow Water

    NASA Astrophysics Data System (ADS)

    Li, Feng-Hua; Zhang, Ren-He

    2010-08-01

    Ocean acoustic tomography is an appealing technique for remote monitoring of the ocean environment. In shallow water, matched field processing (MFP) with a vertical line array is one of the widely used methods for inverting the sound speed profile (SSP) of water column. The approach adopted is to invert the SSP with a bottom mounted horizontal line array (HLA) based on MFP. Empirical orthonormal functions are used to express the SSP, and perturbation theory is used in the forward sound field calculation. This inversion method is applied to the data measured in a shallow water acoustic experiment performed in 2003. Successful results show that the bottom mounted HLA is able to estimate the SSP. One of the most important advantages of the inversion method with bottom mounted HLA is that the bottom mounted HLA can keep a stable array shape and is safe in a relatively long period.

  4. Beyond the Standard Scheme for Relativistic Spectral Line Profiles from Black Hole Accretion Discs

    NASA Astrophysics Data System (ADS)

    Karas, Vladimir; Sochora, V.; Svoboda, J.; Dovciak, M.

    2011-09-01

    Spectral features can arise by reflection of coronal X-rays on a black hole accretion disc. The resulting profile bears various imprints of strong gravitational field acting on the light emitting gas. We study if the currently discussed instruments on-board X-ray satellites will be able to reveal the departure of the line radial emissivity from a simple smooth power-law function, which is often assumed in data fitting and interpretation. Such a departure can be a result of excess emission occurring at a certain distance. This could be used to study variations with radius of the line production or to constrain the position of the inner edge of the accretion disc. By simulating artificial data from a bright active galactic nucleus we show that the required sensitivity and energy resolution could be reached with Large Area Detector of the proposed LOFT mission.

  5. Emission-line profiles in SNe Ib/c - Probing the ejecta geometry

    SciTech Connect

    Taubenberger, S.; Valenti, S.

    2009-05-03

    To constrain the ejecta geometry of stripped-envelope core-collapse SNe, we investigate nearly 100 nebular spectra of 39 objects, several previously unpublished. We perform a Gauss-fitting of [O I]{lambda}{lambda}6300, 6364 in all spectra, and on the basis of the best-fit parameters organise the objects into morphological classes. We conclude that at least 40% of all SNe Ib/c must be aspherical. In some SNe, the [O I] line exhibits a variety of shifted secondary peaks or shoulders, interpreted as blobs of matter ejected at high velocity. The profile of Mg I]{lambda}4571 generally resembles that of [O I]{lambda}{lambda}6300, 6364, suggesting negligible contamination from other lines and confirming that O and Mg are similarly distributed within the ejecta.

  6. Genetic parameters and crossbreeding effects of fat deposition and fatty acid profiles in Iberian pig lines.

    PubMed

    Ibáñez-Escriche, N; Magallón, E; Gonzalez, E; Tejeda, J F; Noguera, J L

    2016-01-01

    The aim of this study was to estimate the genetic and environmental parameters and crossbreeding effects on fatty acid and fat traits in the Iberian pig. Our final goal is to explore target selection traits and define crossbreeding strategies. The phenotypes were obtained under intensive management from 470 animals in a diallelic experiment involving Retinto, Torbiscal, and Entrepelado lines. The data set was composed of backfat thickness at the fourth rib (BFT), intramuscular fat (IMF) in the longissimus thoracis (LT), and the fatty acid profile for IMF and subcutaneous fat (SCF) traits. Data were analyzed through a Bayesian bivariate animal model by using a reparameterization of Dickerson's model. The results obtained showed an important genetic determinism for all traits analyzed with heritability ranging from 0.09 to 0.67. The common environment litter effect also had an important effect on IMF (0.34) and its fatty acid composition (0.06-0.53) at slaughter. The additive genetic correlation between BFT and IMF (additive genetic correlation [] = 0.31) suggested that it would be possible to improve lean growth independent of the IMF with an appropriate selection index. Furthermore, the high additive genetic correlation ( = 0.68) found between MUFA tissues would seem to indicate that either the LT or SCF could be used as the reference tissue for MUFA selection. The relevance of the crossbreeding parameters varied according to the traits analyzed. Backfat thickness at the fourth rib and the fatty acid profile of the IMF showed relevant differences between crosses, mostly due to line additive genetic effects associated with the Retinto line. On the contrary, those for IMF crosses were probably mainly attributable to heterosis effects. Particularly, heterosis effects were relevant for the Retinto and Entrepelado crosses (approximately 16% of the trait), which could be valuable for a crossbreeding system involving these lines.

  7. High-ionization Gas in Active Galactic Nuclei: Line Profiles and Physical Conditions

    NASA Astrophysics Data System (ADS)

    Rodíguez-Ardila, A.; Riffel, R.; Mazzalay, X.; Portilla, J. G.

    2012-08-01

    SOAR/Goodman spectroscopy is employed to detect the coronal lines [Fe VII] 3759, 5159, and 6087 Å, [Ne V] 3423 Å and [Fe X] 6083 Å, the former three suitable to determine the temperature and density of the high-ionization gas. The spectra allow us to fully characterize the profiles of the most conspicuous lines (asymmetries, shifts from the centroid position and line width). The combined results allow us to detect signatures of outflows in the coronal gas and thus set up constrains on the origin of the CLs in AGNs. In addition, AO GEMINI/NIFS IFU spectroscopy is used to study the coronal gas morphology at spatial scales of a few parsecs in the Seyfert 2 galaxy NGC 1068. We found that the gas distribution is rather inhomogeneous and asymmetric. From the comparison of the CL [Mg VIII] with the VLA 6 cm radio emission we found evidence that the CL gas kinematics and morphology is strongly related to the radio jet morphology. All above results allow us to confirm the role that coronal lines have to trace outflows at the inner tens of parsecs of AGNs.

  8. A Tie2-driven BAC-TRAP transgenic line for in vivo endothelial gene profiling.

    PubMed

    Santhosh, Devi; Huang, Zhen

    2016-03-01

    Recent technological innovations including bacterial artificial chromosome-based translating ribosome affinity purification (BAC-TRAP) have greatly facilitated analysis of cell type-specific gene expression in vivo, especially in the nervous system. To better study endothelial gene expression in vivo, we have generated a BAC-TRAP transgenic mouse line where the L10a ribosomal subunit is tagged with EGFP and placed under the control of the endothelium-specific Tie2 (Tek) promoter. We show that transgene expression in this line is widely, but specifically, detected in endothelial cells in several brain regions throughout pre- and postnatal development, as well as in other organs. We also show that this line results in highly significant enrichment of endothelium-specific mRNAs from brain tissues at different stages. This BAC-TRAP line therefore provides a useful genetic tool for in vivo endothelial gene profiling under various developmental, physiological, and pathological conditions. genesis 54:136-145, 2016. © 2016 Wiley Periodicals, Inc.

  9. In-line height profiling metrology sensor for zero defect production control

    NASA Astrophysics Data System (ADS)

    Snel, Rob; Winters, Jasper; Liebig, Thomas; Jonker, Wouter

    2017-06-01

    Contemporary production systems of mechanical precision parts show challenges as increased complexity, tolerances shrinking to sub-microns and yield losses that must be mastered to the extreme. More advanced automation and process control is required to accomplish this task. Often a solution based on feedforward/feedback control is chosen requiring innovative and more advanced in line metrology. This article concentrates first on the context of in line metrology for process control and then on the development of a specific in line height profiling sensor. The novel sensor technology is based on full field time domain white light interferometry which is well know from the quality lab. The novel metrology system is to be mounted close to the production equipment, as required to minimize time delay in the control loop, and is thereby fully exposed to vibrations. This sensor is innovated to perform in line with an orders of magnitude faster throughput than laboratory instruments; it's robust to withstand the rigors of workshops and has a height resolution that is in the nanometer range.

  10. Targeted Biomarker Discovery by High Throughput Glycosylation Profiling of Human Plasma Alpha1-Antitrypsin and Immunoglobulin A

    PubMed Central

    Ruhaak, L. Renee; Koeleman, Carolien A. M.; Uh, Hae-Won; Stam, Jord C.; van Heemst, Diana; Maier, Andrea B.; Houwing-Duistermaat, Jeanine J.; Hensbergen, Paul J.; Slagboom, P. Eline; Deelder, André M.; Wuhrer, Manfred

    2013-01-01

    Protein N-glycosylation patterns are known to show vast genetic as well as physiological and pathological variation and represent a large pool of potential biomarkers. Large-scale studies are needed for the identification and validation of biomarkers, and the analytical techniques required have recently been developed. Such methods have up to now mainly been applied to complex mixtures of glycoproteins in biofluids (e.g. plasma). Here, we analyzed N-glycosylation profiles of alpha1-antitrypsin (AAT) and immunoglobulin A (IgA) enriched fractions by 96-well microtitration plate based high-throughput immuno-affinity capturing and N-glycan analysis using multiplexed capillary gel electrophoresis with laser-induced fluorescence detection (CGE-LIF). Human plasma samples were from the Leiden Longevity Study comprising 2415 participants of different chronological and biological ages. Glycosylation patterns of AAT enriched fractions were found to be associated with chronological (calendar) age and they differed between females and males. Moreover, several glycans in the AAT enriched fraction were associated with physiological parameters marking cardiovascular and metabolic diseases. Pronounced differences were found between males and females in the glycosylation profiles of IgA enriched fractions. Our results demonstrate that large-scale immuno-affinity capturing of proteins from human plasma using a bead-based method combined with high-throughput N-glycan analysis is a powerful tool for the discovery of glycosylation-based biomarker candidates. PMID:24039863

  11. Combination treatment with high-dose vitamin C and alpha-tocopherol does not enhance respiratory-tract lining fluid vitamin C levels in asthmatics.

    PubMed

    Hernandez, Michelle; Zhou, Haibo; Zhou, Bingqing; Robinette, Carole; Crissman, Kay; Hatch, Gary; Alexis, Neil E; Peden, David

    2009-02-01

    Oxidative stress plays a significant role in allergic airway inflammation. Supplementation with alpha-tocopherol (alone or combined with ascorbate/vitamin C) has been assessed as an intervention for allergic airway diseases with conflicting results. Enhancing levels of airway antioxidants with oral supplements has been suggested as an intervention to protect individuals from the effect of inhaled oxidants, although it is unclear whether supplementation changes tocopherol or vitamin C levels in both serum and airway fluids. Our objective was to obtain pilot safety and dosing data from 14 allergic asthmatic volunteers examining the effect of daily combination oral therapy with 500 mg alpha-tocopherol (alpha T) and 2 g vitamin C for 12 wk. We examined serum and airway fluid and cellular levels of alpha- and gamma-tocopherol (gamma T) and vitamin C to plan for future studies of these agents in asthma and allergic rhinitis. Six volunteers completed 12 wk of active treatment with alpha T and vitamin C and 8 completed placebo. Blood and sputum samples were obtained at baseline and at 6 wk and 12 wk of therapy and were analyzed for alpha T, gamma T, and vitamin C levels in the serum, sputum supernatant, and sputum cells. Combination treatment increased serum vitamin C and significantly decreased sputum alpha T and serum gamma T levels. No changes were found in sputum supernatant or sputum cell vitamin C or serum alpha T levels in the active treatment group. In conclusion, supplementation with alpha T and high-dose vitamin C does not augment vitamin C levels in the respiratory-tract lining fluid.

  12. Demonstration of Current Profile Shaping using Double Dog-Leg Emittance Exchange Beam Line at Argonne Wakefield Accelerator

    SciTech Connect

    Ha, Gwanghui; Cho, Moo-Hyun; Conde, Manoel; Doran, Darrell; Gai, Wei; Jing, Chunguang; Kim, Kwang-Je; Liu, Wanming; Namkung, Won; Piot, Philippe; Power, John; Sun, Yin-E; Whiteford, Charles; Wisniewski, Eric; Zholents, Alexander

    2016-06-01

    Emittance exchange (EEX) based longitudinal current profile shaping is the one of the promising current profile shaping technique. This method can generate high quality arbitrary current profiles under the ideal conditions. The double dog-leg EEX beam line was recently installed at the Argonne Wakefield Accelerator (AWA) to explore the shaping capability and confirm the quality of this method. To demonstrate the arbitrary current profile generation, several different transverse masks are applied to generate different final current profiles. The phase space slopes and the charge of incoming beam are varied to observe and suppress the aberrations on the ideal profile. We present current profile shaping results, aberrations on the shaped profile, and its suppression.

  13. Using Line Profiles to Test the Fraternity of Type Ia Supernovae at High and Low Redshifts

    NASA Astrophysics Data System (ADS)

    Blondin, Stéphane; Dessart, Luc; Leibundgut, Bruno; Branch, David; Höflich, Peter; Tonry, John L.; Matheson, Thomas; Foley, Ryan J.; Chornock, Ryan; Filippenko, Alexei V.; Sollerman, Jesper; Spyromilio, Jason; Kirshner, Robert P.; Wood-Vasey, W. Michael; Clocchiatti, Alejandro; Aguilera, Claudio; Barris, Brian; Becker, Andrew C.; Challis, Peter; Covarrubias, Ricardo; Davis, Tamara M.; Garnavich, Peter; Hicken, Malcolm; Jha, Saurabh; Krisciunas, Kevin; Li, Weidong; Miceli, Anthony; Miknaitis, Gajus; Pignata, Giuliano; Prieto, Jose Luis; Rest, Armin; Riess, Adam G.; Salvo, Maria Elena; Schmidt, Brian P.; Smith, R. Chris; Stubbs, Christopher W.; Suntzeff, Nicholas B.

    2006-03-01

    Using archival data of low-redshift (z<0.01 Center for Astrophysics and SUSPECT databases) Type Ia supernovae (SNe Ia) and recent observations of high-redshift (0.16line-profile morphology, focusing on measurements of the velocity location of maximum absorption (vabs) and peak emission (vpeak). Our measurement technique makes it easier to compare low and high signal-to-noise ratio observations. We also quantify the associated sources of error, assessing the effect of line blending with assistance from the parameterized code SYNOW. We find that the evolution of vabs and vpeak for our sample lines (Ca II λ3945, Si II λ6355, and S II λλ5454, 5640) is similar for both the low- and high-redshift samples. We find that vabs for the weak S II λλ5454, 5640 lines and vpeak for S II λ5454 can be used to identify fast-declining [Δm15(B)>1.7] SNe Ia, which are also subluminous. In addition, we give the first direct evidence in two high-z SN Ia spectra of a double-absorption feature in Ca II λ3945, an event also observed, although infrequently, in low-redshift SN Ia spectra (6 out of 22 SNe Ia in our local sample). Moreover, echoing the recent studies of Dessart & Hillier in the context of Type II supernovae (SNe II), we see similar P Cygni line profiles in our large sample of SN Ia spectra. First, the magnitude of the velocity location at maximum profile absorption may underestimate that at the continuum photosphere, as observed, for example, in the optically thinner line S II λ5640. Second, we report for the first time the unambiguous and systematic intrinsic blueshift of peak emission of optical P Cygni line profiles in SN Ia spectra, by as much as 8000 km s-1. All the high-z SNe Ia analyzed in this paper were discovered and followed up by the ESSENCE

  14. Numerical Evaluation of Parameter Correlation in the Hartmann-Tran Line Profile

    NASA Astrophysics Data System (ADS)

    Adkins, Erin M.; Reed, Zachary; Hodges, Joseph T.

    2017-06-01

    The partially correlated quadratic, speed-dependent hard-collision profile (pCqSDHCP), for simplicity referred to as the Hartmann-Tran profile (HTP), has been recommended as a generalized lineshape for high resolution spectroscopy. The HTP parameterizes complex collisional effects such as Dicke narrowing, speed dependent narrowing, and correlations between velocity-changing and dephasing collisions, while also simplifying to simpler profiles that are widely used, such as the Voigt profile. As advanced lineshape profiles are adopted by more researchers, it is important to understand the limitations that data quality has on the ability to retrieve physically meaningful parameters using sophisticated lineshapes that are fit to spectra of finite signal-to-noise ratio. In this work, spectra were simulated using the HITRAN Application Programming Interface (HAPI) across a full range of line parameters. Simulated spectra were evaluated to quantify the precision with which fitted lineshape parameters can be determined at a given signal-to-noise ratio, focusing on the numerical correlation between the retrieved Dicke narrowing frequency and the velocity-changing and dephasing collisions correlation parameter. Tran, H., N. Ngo, and J.-M. Hartmann, Journal of Quantitative Spectroscopy and Radiative Transfer 2013. 129: p. 89-100. Tennyson, et al., Pure Appl. Chem. 2014, 86: p. 1931-1943. Kochanov, R.V., et al., Journal of Quantitative Spectroscopy and Radiative Transfer 2016. 177: p. 15-30. Tran, H., N. Ngo, and J.-M. Hartmann, Journal of Quantitative Spectroscopy and Radiative Transfer 2013. 129: p. 199-203.

  15. SNP array profiling of mouse cell lines identifies their strains of origin and reveals cross-contamination and widespread aneuploidy.

    PubMed

    Didion, John P; Buus, Ryan J; Naghashfar, Zohreh; Threadgill, David W; Morse, Herbert C; de Villena, Fernando Pardo-Manuel

    2014-10-03

    The crisis of Misidentified and contaminated cell lines have plagued the biological research community for decades. Some repositories and journals have heeded calls for mandatory authentication of human cell lines, yet misidentification of mouse cell lines has received little publicity despite their importance in sponsored research. Short tandem repeat (STR) profiling is the standard authentication method, but it may fail to distinguish cell lines derived from the same inbred strain of mice. Additionally, STR profiling does not reveal karyotypic changes that occur in some high-passage lines and may have functional consequences. Single nucleotide polymorphism (SNP) profiling has been suggested as a more accurate and versatile alternative to STR profiling; however, a high-throughput method for SNP-based authentication of mouse cell lines has not been described. We have developed computational methods (Cell Line Authentication by SNP Profiling, CLASP) for cell line authentication and copy number analysis based on a cost-efficient SNP array, and we provide a reference database of commonly used mouse strains and cell lines. We show that CLASP readily discriminates among cell lines of diverse taxonomic origins, including multiple cell lines derived from a single inbred strain, intercross or wild caught mouse. CLASP is also capable of detecting contaminants present at concentrations as low as 5%. Of the 99 cell lines we tested, 15 exhibited substantial divergence from the reported genetic background. In all cases, we were able to distinguish whether the authentication failure was due to misidentification (one cell line, Ba/F3), the presence of multiple strain backgrounds (five cell lines), contamination by other cells and/or the presence of aneuploid chromosomes (nine cell lines). Misidentification and contamination of mouse cell lines is potentially as widespread as it is in human cell culture. This may have substantial implications for studies that are dependent on the

  16. Rodent carcinogenicity profile of the antidiabetic dual PPAR alpha and gamma agonist muraglitazar.

    PubMed

    Tannehill-Gregg, Sarah H; Sanderson, Thomas P; Minnema, Daniel; Voelker, Richard; Ulland, Borge; Cohen, Samuel M; Arnold, Lora L; Schilling, Beth E; Waites, C Robbie; Dominick, Mark A

    2007-07-01

    The carcinogenic potential of muraglitazar, a dual human peroxisome proliferator-activated receptor alpha/gamma agonist, was evaluated in 2-year studies in mice (1, 5, 20, and 40 mg/kg) and rats (1, 5, 30, and 50 mg/kg). Benign gallbladder adenomas occurred at low incidences in male mice at 20 and 40 mg/kg (area under the curve [AUC] exposures > or = 62 times human exposure at 5 mg/day) and were considered drug related due to an increased incidence of gallbladder mucosal hyperplasia at these doses. There was a dose-related increased incidence of transitional cell papilloma and carcinoma of the urinary bladder in male rats at 5, 30, and 50 mg/kg (AUC exposures > or = 8 times human exposure at 5 mg/day). At 30 and 50 mg/kg, the urinary bladder tumors were accompanied by evidence of increased urine solids. Subsequent investigative studies established that the urinary bladder carcinogenic effect was mediated by urolithiasis rather than a direct pharmacologic effect on urothelium. Incidences of subcutaneous liposarcoma in male rats and subcutaneous lipoma in female rats were increased at 50 mg/kg (AUC exposures > or = 48 times human exposure at 5 mg/day) and attributed, in part, to persistent pharmacologic stimulation of preadipocytes. Toxicologically relevant nonneoplastic changes in target tissues included thinning of cortical bone in mice and hyperplastic and metaplastic adipocyte changes in mice and rats. Considering that muraglitazar is nongenotoxic, the observed tumorigenic effects in mice and rats have no established clinical relevance since they occurred at either clinically nonrelevant exposures (gallbladder and adipose tumors) or by a species-specific mechanism (urinary bladder tumors).

  17. Transcriptional and Secretomic Profiling of Epidermal Cells Exposed to Alpha Particle Radiation

    PubMed Central

    Chauhan, Vinita; Howland, Matthew; Greene, Hillary Boulay; Wilkins, Ruth C

    2012-01-01

    Alpha (α)-particle emitters are probable isotopes to be used in a terrorist attack. The development of biological assessment tools to identify those who have handled these difficult to detect materials would be an asset to our current forensic capacity. In this study, for the purposes of biomarker discovery, human keratinocytes were exposed to α-particle and X-radiation (0.98 Gy/h at 0, 0.5, 1.0, 1.5 Gy) and assessed for differential gene and protein expression using microarray and Bio-Plex technology, respectively. Secretomic analysis of supernatants showed expression of two pro-inflammatory cytokines (IL-13 and PDGF-bb) to be exclusively affected in α-particle exposed cells. The highest dose of α-particle radiation modulated a total of 67 transcripts (fold change>|1.5|, (False discovery rate) FDR<0.05) in exposed cells. Several genes which responded with high expression levels (>2 fold) included KIF20A, NEFM, C7orf10, HIST1H2BD, BMP6, and HIST1H2AC. Among the high expressing genes, five (CCNB2, BUB1, NEK2, CDC20, AURKA) were also differentially expressed at the medium (1.0 Gy) dose however, these genes were unmodulated following exposure to X-irradiation. Networks of these genes clustered around tumor protein-53 and transforming growth factor-beta signaling. This study has identified some potential gene /protein responses and networks that may be validated further to confirm their specificity and potential to be signature biomarkers of α-particle exposure. PMID:23002402

  18. The 3D scanner prototype utilize object profile imaging using line laser and octave software

    NASA Astrophysics Data System (ADS)

    Nurdini, Mugi; Manunggal, Trikarsa Tirtadwipa; Samsi, Agus

    2016-11-01

    Three-dimensional scanner or 3D Scanner is a device to reconstruct the real object into digital form on a computer. 3D Scanner is a technology that is being developed, especially in developed countries, where the current 3D Scanner devices is the advanced version with a very expensive prices. This study is basically a simple prototype of 3D Scanner with a very low investment costs. 3D Scanner prototype device consists of a webcam, a rotating desk system controlled by a stepper motor and Arduino UNO, and a line laser. Objects that limit the research is the object with same radius from its center point (object pivot). Scanning is performed by using object profile imaging by line laser which is then captured by the camera and processed by a computer (image processing) using Octave software. On each image acquisition, the scanned object on a rotating desk rotated by a certain degree, so for one full turn multiple images of a number of existing side are finally obtained. Then, the profile of the entire images is extracted in order to obtain digital object dimension. Digital dimension is calibrated by length standard, called gage block. Overall dimensions are then digitally reconstructed into a three-dimensional object. Validation of the scanned object reconstruction of the original object dimensions expressed as a percentage error. Based on the results of data validation, horizontal dimension error is about 5% to 23% and vertical dimension error is about +/- 3%.

  19. line profiles for a sample of supergiant HII regions. II. Broad, low intensity components

    NASA Astrophysics Data System (ADS)

    Rozas, M.; Richer, M. G.; López, J. A.; Relaño, M.; Beckman, J. E.

    2006-08-01

    We analyze the broad, low intensity, high velocity components that are seen in the Hα line profiles for a sample of HII regions. These HII regions are chosen from among the brightest and most isolated in a sample of spiral galaxies for which we have photometric and spectroscopic data: NGC 157, NGC 3631, NGC 6764, NGC 3344, NGC 4321, NGC 5364, NGC 5055, NGC 5985, and NGC 7479. We confirm that the line profiles of most of these bright, giant extragalactic HII regions contain broad kinematic components of low intensity, but high velocity, that we denote as wings. We analyze these components, deriving emission measures, central velocities, and velocity dispersions of the blue and red features, which are similar. We interpret these components as expanding shells within the HII regions and produced by the stellar winds from the ionizing stars. We compare the kinetic energies of these expanding shells with the kinetic energy available from the stellar winds. If we allow for the hypothesis that the brightest HII regions are density bounded, we show that, for these HII regions, the stellar wind mechanism can explain the observed shell kinetic energies.

  20. line profiles for a sample of supergiant HII regions. I. The main spectral component

    NASA Astrophysics Data System (ADS)

    Rozas, M.; Richer, M. G.; López, J. A.; Relaño, M.; Beckman, J. E.

    2006-08-01

    We present an analysis of the Hα emission line profiles of a sample of giant extragalactic HII regions, selected from among the brightest and most isolated in a group of spiral galaxies for which we have photometric and spectroscopic data: NGC 157, NGC 3631, NGC 6764, NGC 3344, NGC 4321, NGC 5364, NGC 5055, NGC 5985, NGC 7479. Our study confirms that the majority of the line profiles are composed of a bright, main component and two fainter, high velocity components that we denominate wings. Here, we analyze the kinematics of the principal components, finding a relation between the Hα luminosity, L_Hα, and the turbulent velocity dispersion, σ_nt. A linear fit to the relation between these quantities yields log L_Hα = (35.6 ± 0.4) + (2.87 ± 0.2)log σ_nt, in agreement with previous studies. We compute the mass of each HII region using both the virial theorem and the Hα luminosity, confirming that, though these estimates do not coincide exactly, they are comparable within the uncertainties and consequently that the HII regions in our sample are approximately virialized.

  1. Time-course gene profiling and networks in demethylated retinoblastoma cell line.

    PubMed

    Malusa, Federico; Taranta, Monia; Zaki, Nazar; Cinti, Caterina; Capobianco, Enrico

    2015-09-15

    Retinoblastoma, a very aggressive cancer of the developing retina, initiatiates by the biallelic loss of RB1 gene, and progresses very quickly following RB1 inactivation. While its genome is stable, multiple pathways are deregulated, also epigenetically. After reviewing the main findings in relation with recently validated markers, we propose an integrative bioinformatics approach to include in the previous group new markers obtained from the analysis of a single cell line subject to epigenetic treatment. In particular, differentially expressed genes are identified from time course microarray experiments on the WERI-RB1 cell line treated with 5-Aza-2'-deoxycytidine (decitabine; DAC). By inducing demethylation of CpG island in promoter genes that are involved in biological processes, for instance apoptosis, we performed the following main integrative analysis steps: i) Gene expression profiling at 48h, 72h and 96h after DAC treatment; ii) Time differential gene co-expression networks and iii) Context-driven marker association (transcriptional factor regulated protein networks, master regulatory paths). The observed DAC-driven temporal profiles and regulatory connectivity patterns are obtained by the application of computational tools, with support from curated literature. It is worth emphasizing the capacity of networks to reconcile multi-type evidences, thus generating testable hypotheses made available by systems scale predictive inference power. Despite our small experimental setting, we propose through such integrations valuable impacts of epigenetic treatment in terms of gene expression measurements, and then validate evidenced apoptotic effects.

  2. Time-course gene profiling and networks in demethylated retinoblastoma cell line

    PubMed Central

    Malusa, Federico; Taranta, Monia; Zaki, Nazar; Cinti, Caterina; Capobianco, Enrico

    2015-01-01

    Retinoblastoma, a very aggressive cancer of the developing retina, initiatiates by the biallelic loss of RB1 gene, and progresses very quickly following RB1 inactivation. While its genome is stable, multiple pathways are deregulated, also epigenetically. After reviewing the main findings in relation with recently validated markers, we propose an integrative bioinformatics approach to include in the previous group new markers obtained from the analysis of a single cell line subject to epigenetic treatment. In particular, differentially expressed genes are identified from time course microarray experiments on the WERI-RB1 cell line treated with 5-Aza-2′-deoxycytidine (decitabine; DAC). By inducing demethylation of CpG island in promoter genes that are involved in biological processes, for instance apoptosis, we performed the following main integrative analysis steps: i) Gene expression profiling at 48h, 72h and 96h after DAC treatment; ii) Time differential gene co-expression networks and iii) Context-driven marker association (transcriptional factor regulated protein networks, master regulatory paths). The observed DAC-driven temporal profiles and regulatory connectivity patterns are obtained by the application of computational tools, with support from curated literature. It is worth emphasizing the capacity of networks to reconcile multi-type evidences, thus generating testable hypotheses made available by systems scale predictive inference power. Despite our small experimental setting, we propose through such integrations valuable impacts of epigenetic treatment in terms of gene expression measurements, and then validate evidenced apoptotic effects. PMID:26143641

  3. Geocoronal Balmer α line profile observations and forward-model analysis

    NASA Astrophysics Data System (ADS)

    Mierkiewicz, E. J.; Bishop, J.; Roesler, F. L.; Nossal, S. M.

    2006-05-01

    High spectral resolution geocoronal Balmer α line profile observations from Pine Bluff Observatory (PBO) are presented in the context of forward-model analysis. Because Balmer series column emissions depend significantly on multiple scattering, retrieval of hydrogen parameters of general aeronomic interest from these observations (e.g., the hydrogen column abundance) currently requires a forward modeling approach. This capability is provided by the resonance radiative transfer code LYAO_RT. We have recently developed a parametric data-model comparison search procedure employing an extensive grid of radiative transport model input parameters (defining a 6-dimensional parameter space) to map-out bounds for feasible forward model retrieved atomic hydrogen density distributions. We applied this technique to same-night (March, 2000) ground-based Balmer α data from PBO and geocoronal Lyman β measurements from the Espectrógrafo Ultravioleta extremo para la Radiación Difusa (EURD) instrument on the Spanish satellite MINISAT-1 (provided by J.F. Gómez and C. Morales of the Laboratorio de Astrofisica Espacial y Física Fundamental, INTA, Madrid, Spain) in order to investigate the modeling constraints imposed by two sets of independent geocoronal intensity measurements, both of which rely on astronomical calibration methods. In this poster we explore extending this analysis to the line profile information also contained in the March 2000 PBO Balmer α data set. In general, a decrease in the Doppler width of the Balmer α emission with shadow altitude is a persistent feature in every night of PBO observations in which a wide range of shadow altitudes are observed. Preliminary applications of the LYAO_RT code, which includes the ability to output Doppler line profiles for both the singly and multiply scattered contributions to the Balmer α emission line, displays good qualitative agreement with regard to geocoronal Doppler width trends observed from PBO. Model-data Balmer

  4. Stark spectroscopy of atomic hydrogen balmer-alpha line for electric field measurement in plasmas by saturation spectroscopy

    NASA Astrophysics Data System (ADS)

    Nishiyama, S.; Katayama, K.; Nakano, H.; Goto, M.; Sasaki, K.

    2016-09-01

    Detailed structures of electric fields in sheath and pre-sheath regions of various plasmas are interested from the viewpoint of basic plasma physics. Several researchers observed Stark spectra of Doppler-broadened Rydberg states to evaluate electric fields in plasmas; however, these measurements needed high-power, expensive tunable lasers. In this study, we carried out another Stark spectroscopy with a low-cost diode laser system. We applied saturation spectroscopy, which achieves a Doppler-free wavelength resolution, to observe the Stark spectrum of the Balmer-alpha line of atomic hydrogen in the sheath region of a low-pressure hydrogen plasma. The hydrogen plasma was generated in an ICP source which was driven by on-off modulated rf power at 20 kHz. A planar electrode was inserted into the plasma. Weak probe and intense pump laser beams were injected into the plasma from the counter directions in parallel to the electrode surface. The laser beams crossed with a small angle above the electrode. The observed fine-structure spectra showed shifts, deformations, and/or splits when varying the distance between the observation position and the electrode surface. The detection limit for the electric field was estimated to be several tens of V/cm.

  5. Cell growth kinetics of the human cell line Colo-205 irradiated with photons and astatine-211 alpha-particles.

    PubMed

    Palm, S; Andersson, H; Bäck, T; Claesson, I; Delle, U; Hultborn, R; Jacobsson, L; Köpf, I; Lindegren, S

    2000-01-01

    Cell growth kinetics following Astatine-211 (211At, alpha-particle emitter) and photon irradiation were studied for the human colorectal cell line Colo-205. A growth assay using 96-well plates was chosen. The growth kinetics could be simulated by assuming certain fractions of cells with various proliferative capacities, i.e. from none up to 5 cell doublings, in addition to the defined survivors with remaining unlimited clonogenic capacity. No significant difference in cell growth characteristics was seen between 211At and photon irradiation. The cell doubling time, as calculated from the increment in optical density, was compared with the results from BrdU experiments in the early phases of growth (Tpot = 18.5 +/- 0.6 h for LDR (low dose rate) photon irradiated and 20.3 +/- 0.8 hours for sham-irradiated cells 40-45 hours post-irradiation) confirming the transient accelerated growth of irradiated cells. No statistically significant difference in growth was found between LDR, MDR (medium dose rate) and HDR (high dose rate) photon irradiation.

  6. Characterization of the transport of. cap alpha. -methylaminoisobutyric acid by a human intestinal cell line (HT-29)

    SciTech Connect

    Bergin, L.; Dantzig, A.H.

    1986-03-01

    Under certain growth conditions, the human colon adenocarcinoma cell line HT-29 exhibits intestinal enterocyte-like properties. The differentiated cells possess a brush border with the enzyme markers (aminopeptidase and sucrase) normally associated with the intestine. To aid in the characterization of the transport properties of these cells, the uptake of a non-metabolizable amino acid analog, /sup 14/C-..cap alpha..-methylaminoisobutyric acid (MeAIB) as examined in the HT-29-Al subclone which possesses a brush border. The cells exhibited a time-dependent uptake of MeAIB which was concentrative and sodium-dependent. The pH optimum for uptake was about 7.8. Uptake was inhibited by low temperature, 1 mM ouabain, or 0.5 mM dinitrophenol. A 1 hr-preincubation of the cells in an isotonic KCl solution resulted in a decreased uptake rate, suggesting that a negative membrane potential is important for MeAIB uptake. The rate of 0.5 mM MeABIB uptake was inhibited by 40 to 90% by 5 mM of certain small neutral amino acids such as Ala, Ser, Pro, Gly, met but not by acidic or basic amino acids such as Asp, Glu, Arg or Lys. The uptake of MeAIB appears to be mediated by an amino acid transport carrier similar to the A-system described previously for Chinese hamster ovary cells.

  7. Elongated TCR alpha chain CDR3 favors an altered CD4 cytokine profile

    PubMed Central

    2014-01-01

    Background CD4 T lymphocyte activation requires T cell receptor (TCR) engagement by peptide/MHC (major histocompatibility complex) (pMHC). The TCR complementarity-determining region 3 (CDR3) contains variable α and β loops critical for pMHC recognition. During any immune response, tuning of TCR usage through progressive clonal selection occurs. Th1 and Th2 cells operate at different avidities for activation and display distinct transcriptional programs, although polarization may be plastic, influenced by pathogens and cytokines. We therefore hypothesized that CDR3αβ sequence features may intrinsically influence CD4 phenotype during progression of a response. Results We show that CD4 polarization involves distinct CDR3α usage: Th1 and Th17 cells favored short TCR CDR3α sequences of 12 and 11 amino acids, respectively, while Th2 cells favored elongated CDR3α loops of 14 amino acids, with lower predicted affinity. The dominant Th2- and Th1-derived TCRα sequences with14 amino acid CDR3 loops and 12 amino acid CDR3 loops, respectively, were expressed in TCR transgenics. The functional impact of these TCRα transgenes was assessed after in vivo priming with a peptide/adjuvant. The short, Th1-derived receptor transgenic T cell lines made IFNγ, but not IL-4, 5 or 13, while the elongated, Th2-derived receptor transgenic T cell lines made little or no IFNγ, but increased IL-4, 5 and 13 with progressive re-stimulations, mirrored by GATA-3 up-regulation. T cells from primed Th2 TCRα transgenics selected dominant TCR Vβ expansions, allowing us to generate TCRαβ transgenics carrying the favored, Th2-derived receptor heterodimer. Primed T cells from TCRαβ transgenics made little or no IL-17 or IFNγ, but favored IL-9 after priming with Complete Freund’s adjuvant and IL-4, 5, 9, 10 and 13 after priming with incomplete Freund’s. In tetramer-binding studies, this transgenic receptor showed low binding avidity for pMHC and polarized T cell lines show TCR avidity

  8. Kinetic Energy Distribution of D(2p) Atoms From Analysis of the D Lyman-a Line Profile

    NASA Technical Reports Server (NTRS)

    Ciocca, Marco; Ajello, Joseph M.; Liu, Xianming; Maki, Justin

    1997-01-01

    The absolute cross sections of the line center (slow atoms) and wings (fast atoms) and total emission line profile were measured from threshold to 400 eV. Analytical model coeffiecients are given for the energy dependence of the measured slow atom cross section.

  9. Kinetic Energy Distribution of D(2p) Atoms From Analysis of the D Lyman-a Line Profile

    NASA Technical Reports Server (NTRS)

    Ciocca, Marco; Ajello, Joseph M.; Liu, Xianming; Maki, Justin

    1997-01-01

    The absolute cross sections of the line center (slow atoms) and wings (fast atoms) and total emission line profile were measured from threshold to 400 eV. Analytical model coeffiecients are given for the energy dependence of the measured slow atom cross section.

  10. Gene expression profile induced by BCNU in human glioma cell lines with differential MGMT expression.

    PubMed

    Bandres, Eva; Andion, Esther; Escalada, Alvaro; Honorato, Beatriz; Catalan, Victoria; Cubedo, Elena; Cordeu, Lucia; Garcia, Fermin; Zarate, Ruth; Zabalegui, Natalia; Garcia-Foncillas, Jesus

    2005-07-01

    Chemotherapy with the alkylating agent BCNU (1,3-bis (2-chloroethyl)-1-nitrosourea) is the most commonly used chemotherapeutic agent for gliomas. However, the usefulness of this agent is limited because tumor cell resistance to BCNU is frequently found in clinical brain tumor therapy. The O6-methylguanine-DNA methyltransferase protein (MGMT) reverses alkylation at the O6 position of guanine and we have reported the role of MGMT in the response of brain tumors to alkylating agents. However, the different mechanisms underlying the patterns related to MGMT remain unclear. To better understand the molecular mechanism by which BCNU exerts its effect in glioma cell lines according MGMT expression, we used microarray technology to interrogate 3800 known genes and determine the gene expression profiles altered by BCNU treatment. Our results showed that treatment with BCNU alters the expression of a diverse group of genes in a time-dependent manner. A subset of gene changes was found common in both glioma cell lines and other subset is specific of each cell line. After 24 h of BCNU treatment, up-regulation of transcription factors involved in the nucleation of both RNA polymerase II and III transcription initiation complexes was reported. Interestingly, BCNU promoted the expression of actin-dependent regulators of chromatin. Similar effects were found with higher BCNU doses in MGMT+ cell line showing a similar mechanism that in MGMT-deficient cell with standard doses. Our data suggest that human glioma cell lines treated with BCNU, independently of MGMT expression, show changes in the expression of cell cycle and survival-related genes interfering the transcription mechanisms and the chromatin regulation.

  11. Isophotes of a field in the Cygnus Loop photographed in the forbidden O III and forbidden N II + H-alpha lines

    NASA Astrophysics Data System (ADS)

    Sitnik, T. G.; Toropova, M. S.

    1982-12-01

    From interference-filter image-tube photographs of a 9 arc min field in the western part of the Cygnus Loop supernova remnant, taken in the 5007 forbidden O III and 6584, 6563 forbidden N II + H-alpha lines, sets of isophotes are derived by an equidensitometry technique based on the Sabattier effect. The emission regions in these lines exhibit a relatively displacement, interpreted as evidence for radiative cooling of the gas behind the shock generated in the supernova outburst. An explanation is offered for the differing morphology of the nebular filaments in the forbiddden O III and forbidden N II + H-alpha lines. The anomalously high I (O III)/I(H-beta) intensity ratio may reflect a spatial separation of the corresponding emission zones.

  12. Isophotes of a field in the Cygnus loop photographed in the (O III) and (N II)+H. cap alpha. lines

    SciTech Connect

    Sitnik, T.G.; Toropova, M.S.

    1982-11-01

    From interference-filter image-tube photographs of a 9' field in the western part of the Cygnus Loop supernova remnant, taken in the lambda5007 (O III) and lambdalambda 6584, 6563 (N II) + H..cap alpha.. lines, sets of isophotes are derived by an equidensitometry technique based on the Sabattier effect. The emission regions in these lines exhibit a relative displacement, interpreted as evidence for radiative cooling of the gas behind the shock generated in the supernova outburst. An explanation is offered for the differing morphology of the nebular filaments in the (O III) and (N II) + H..cap alpha.. lines. The anomalously high I/sub Otsi/II/I/sub H/..beta.. intensity ratio may reflect a spatial separation of the corresponding emission zones.

  13. Line profiles variations from atmospheric eclipses: Constraints on the wind structure in Wolf-Rayet stars

    NASA Technical Reports Server (NTRS)

    Auer, L. H.; Koenigsberger, G.

    1994-01-01

    Binary systems in which one of the components has a stellar wind may present a phenomenon known as 'wind' or 'atmospheric eclipse', in which that wind occults the luminous disk of the companion. The enhanced absorption profile, relative to the spectrum at uneclipsed orbital phases, can be be modeled to yield constraints on the spatial structure of the eclipsing wind. A new, very efficient approach to the radiative transfer problem, which makes no requirements with respect to monotonicity of the velocity gradient or size of that gradient, is presented. The technique recovers both the comoving frame calculation and the Sobolev approximation in the appropiate limits. Sample computer simulations of the line profile variations induced by wind eclipses are presented. It is shown that the location of the wind absorption features in frequency is a diagnostic tool for identifying the size of the wind acceleration region. Comparison of the model profile variations with the observed variations in the Wolf-Rayet (W-R)+6 binary system V444 Cyg illustrate how the method can be used to derive information on the structure of the wind of the W-R star constrain the size of the W-R core radius.

  14. Line profiles variations from atmospheric eclipses: Constraints on the wind structure in Wolf-Rayet stars

    NASA Technical Reports Server (NTRS)

    Auer, L. H.; Koenigsberger, G.

    1994-01-01

    Binary systems in which one of the components has a stellar wind may present a phenomenon known as 'wind' or 'atmospheric eclipse', in which that wind occults the luminous disk of the companion. The enhanced absorption profile, relative to the spectrum at uneclipsed orbital phases, can be be modeled to yield constraints on the spatial structure of the eclipsing wind. A new, very efficient approach to the radiative transfer problem, which makes no requirements with respect to monotonicity of the velocity gradient or size of that gradient, is presented. The technique recovers both the comoving frame calculation and the Sobolev approximation in the appropiate limits. Sample computer simulations of the line profile variations induced by wind eclipses are presented. It is shown that the location of the wind absorption features in frequency is a diagnostic tool for identifying the size of the wind acceleration region. Comparison of the model profile variations with the observed variations in the Wolf-Rayet (W-R)+6 binary system V444 Cyg illustrate how the method can be used to derive information on the structure of the wind of the W-R star constrain the size of the W-R core radius.

  15. Radiation Changes the Metabolic Profiling of Melanoma Cell Line B16

    PubMed Central

    Yu, Yating; Liang, Wei; Zheng, Qinghui; Huang, Xianing; Huang, Yong; Lu, Xiaoling; Zhao, Yongxiang

    2016-01-01

    Radiation therapy can be an effective way to kill cancer cells using ionizing radiation, but some tumors are resistant to radiation therapy and the underlying mechanism still remains elusive. It is therefore necessary to establish an appropriate working model to study and monitor radiation-mediated cancer therapy. In response to cellular stress, the metabolome is the integrated profiling of changes in all metabolites in cells, which can be used to investigate radiation tolerance mechanisms and identify targets for cancer radiation sensibilization. In this study, using 1H nuclear magnetic resonance for untargeted metabolic profiling in radiation-tolerant mouse melanoma cell line B16, we comprehensively investigated changes in metabolites and metabolic network in B16 cells in response to radiation. Principal component analysis and partial least squares discriminant analysis indicated the difference in cellular metabolites between the untreated cells and X-ray radiated cells. In radiated cells, the content of alanine, glutamate, glycine and choline was increased, while the content of leucine, lactate, creatine and creatine phosphate was decreased. Enrichment analysis of metabolic pathway showed that the changes in metabolites were related to multiple metabolic pathways including the metabolism of glycine, arginine, taurine, glycolysis, and gluconeogenesis. Taken together, with cellular metabolome study followed by bioinformatic analysis to profile specific metabolic pathways in response to radiation, we deepened our understanding of radiation-resistant mechanisms and radiation sensibilization in cancer, which may further provide a theoretical and practical basis for personalized cancer therapy. PMID:27631970

  16. Asymmetric profiles and prewetting lines in the filling of planar slits with Ne.

    PubMed

    Sartarelli, Salvador A; Szybisz, Leszek

    2013-05-23

    The filling of slits with identical planar walls is investigated in the frame of the density functional theory. For this kind of slit, the confining potential is symmetric with respect to its central plane. Closed and open systems are studied by applying, respectively, the canonical and grand canonical ensembles (CE and GCE). Results obtained for the confinement of fluid Ne by alkaline surfaces are reported. The behavior of these systems is analyzed by varying the strength of the Ne-substrate attraction, the temperature T, and the coverage Γ(l). It is assumed that the one-body density of the fluid, ρ(r), is uniform along the (x, y) planes parallel to the walls, becoming a function of the coordinate z perpendicular to those planes. Two sorts of solutions are found for the density profile: (i) symmetric ones that follow the left-right symmetry of the potential exerted by the walls and (ii) asymmetric ones that break the symmetry of the slit. The pores are wide enough for determining prewetting (PW) lines and wetting and critical PW temperatures, i.e., T(w) and T(cpw), from the analysis of symmetric solutions provided by both the CE and GCE schemes. Asymmetric species are examined in detail for T > T(w). It is shown that for a given Ne-substrate pair at a fixed T both the CE and GCE frames yield only one asymmetric 2-fold degenerate stable profile (formed by a "thin" wetting film at one wall and a "thick" wetting film at the other) coexisting with two symmetric profiles (formed by "thin" or "thick" wetting films at the two walls), while the remaining asymmetric states are at best metastable. This feature occurs along PW lines and disappears at T(cpw).

  17. Complex X-ray Absorption and the Fe K(alpha) Profile in NGC 3516

    NASA Technical Reports Server (NTRS)

    Turner, T. J.; Kraemer, S. B.; George, I. M.; Reeves, J. N.; Botorff, M. C.

    2004-01-01

    We present data from simultaneous Chandra, XMM-Newton and BeppoSAX observations of the Seyfert 1 galaxy NGC 3516, taken during 2001 April and November. We have investigated the nature of the very flat observed X-ray spectrum. Chandra grating data show the presence of X-ray absorption lines, revealing two distinct components of the absorbing gas, one which is consistent with our previous model of the UV/X-ray absorber while the other, which is outflowing at a velocity of approximately 1100 kilometers per second, has a larger column density and is much more highly ionized. The broad-band spectral characteristics of the X-ray continuum observed with XMM during 2001 April, reveal the presence of a third layer of absorption consisting of a very large column (approximately 2.5 x 10(exp 23) per square centimeter) of highly ionized gas with a covering fraction approximately 50%. This low covering fraction suggests that the absorber lies within a few 1t-days of the X-ray source and/or is filamentary in structure. Interestingly, these absorbers are not in thermal equilibrium with one another. The two new components are too highly ionized to be radiatively accelerated, which we suggest is evidence for a hydromagnetic origin for the outflow. Applying our model to the November dataset, we can account for the spectral variability primarily by a drop in the ionization states of the absorbers, as expected by the change in the continuum flux. When this complex absorption is accounted for we find the underlying continuum to be typical of Seyfert 1 galaxies. The spectral curvature attributed to the high column absorber, in turn, reduces estimates of the flux and extent of any broad Fe emission line from the accretion disk.

  18. Amino Acid Profiling of Zinc Resistant Prostate Cancer Cell Lines: Associations With Cancer Progression.

    PubMed

    Kratochvilova, Monika; Raudenska, Martina; Heger, Zbynek; Richtera, Lukas; Cernei, Natalia; Adam, Vojtech; Babula, Petr; Novakova, Marie; Masarik, Michal; Gumulec, Jaromir

    2017-05-01

    Failure in intracellular zinc accumulation is a key process in prostate carcinogenesis. Nevertheless, epidemiological studies of zinc administration have provided contradicting results. In order to examine the impact of the artificial intracellular increase of zinc(II) ions on prostate cancer metabolism, PNT1A, 22Rv1, and PC-3 prostatic cell lines-depicting different stages of cancer progression-and their zinc-resistant counterparts were used. To determine "benign" and "malignant" metabolic profiles, amino acid patterns, gene expression, and antioxidant capacity of these cell lines were assessed. Amino acid profiles were examined using an ion-exchange liquid chromatography. Intracellular zinc content was measured by atomic absorption spectrometry. Metallothionein was quantified using differential pulse voltammetry. The content of reduced glutathione was determined using high performance liquid chromatography coupled with an electrochemical detector. Cellular antioxidant capacity was determined by the ABTS test and gene expression analysis was performed by qRT-PCR. Long-term zinc treatment was shown to reroute cell metabolism from benign to more malignant type. Long-term application of high concentration of zinc(II) significantly enhanced cisplatin resistance, invasiveness, cellular antioxidant capacity, synthesis of glutathione, and expression of treatment resistance- and stemness-associated genes (SOX2, POU5F1, BIRC5). Tumorous cell lines universally displayed high accumulation of aspartate and sarcosine and depletion of essential amino acids. Increased aspartate/threonine, aspartate/methionine, and sarcosine/serine ratios were associated with cancer phenotype with high levels of sensitivity and specificity. Prostate 77: 604-616, 2017. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

  19. Autoantibody profiling of patients with primary biliary cirrhosis using a multiplexed line-blot assay.

    PubMed

    Villalta, Danilo; Sorrentino, Maria Concetta; Girolami, Elia; Tampoia, Marilina; Alessio, Maria Grazia; Brusca, Ignazio; Daves, Massimo; Porcelli, Brunetta; Barberio, Giuseppina; Bizzaro, Nicola

    2015-01-01

    To evaluate the autoantibody profile in patients with primary biliary cirrhosis (PBC) using a new multiplexed line-blot assay specifically designed for the diagnosis of autoimmune liver diseases. Sera of 58 consecutive PBC patients and 191 disease controls (144 with autoimmune liver diseases other than PBC, and 67 with non-autoimmune chronic liver diseases) were tested by both the multiplexed line-blot Autoimmune Liver Disease Profile 2 (ALD2) and by IIF on HEp-2 cells and on rat kidney/liver/stomach tissues. ALD2 contains the following PBC-associated antigens: AMA-M2, natively purified from bovine heart; M2-E3, a recombinant fusion protein including the E2 subunits of PDC, BCOADC and OGDC; sp100, PML and gp210 recombinant proteins. With the ALD2 assay, a positive reaction to AMA-M2, M2-E3, sp100, PML and gp210 in PBC patients was observed in 77.6%, 84.5%, 34.5%, 15.1% and 18.9%, respectively, of the PBC sera. The overall sensitivity and specificity for PBC were 98.3% and 93.7%. Using IIF, positivity rates to AMA, and to antinuclear autoantibodies with membranous/rim-like and multiple nuclear dot patterns were 86.2%, 8.6% and 22.4%, respectively. The overall sensitivity and specificity for PBC of the IIF method were 86.2% and 97.9%, respectively. The ALD2 line-blot showed a good diagnostic accuracy for PBC and a higher sensitivity than the IIF method to detect sp100 and gp210 autoantibodies. Copyright © 2014 Elsevier B.V. All rights reserved.

  20. Serenoa repens (Permixon) inhibits the 5alpha-reductase activity of human prostate cancer cell lines without interfering with PSA expression.

    PubMed

    Habib, Fouad K; Ross, Margaret; Ho, Clement K H; Lyons, Valerie; Chapman, Karen

    2005-03-20

    The phytotherapeutic agent Serenoa repens is an effective dual inhibitor of 5alpha-reductase isoenzyme activity in the prostate. Unlike other 5alpha-reductase inhibitors, Serenoa repens induces its effects without interfering with the cellular capacity to secrete PSA. Here, we focussed on the possible pathways that might differentiate the action of Permixon from that of synthetic 5alpha-reductase inhibitors. We demonstrate that Serenoa repens, unlike other 5alpha-reductase inhibitors, does not inhibit binding between activated AR and the steroid receptor-binding consensus in the promoter region of the PSA gene. This was shown by a combination of techniques: assessment of the effect of Permixon on androgen action in the LNCaP prostate cancer cell line revealed no suppression of AR and maintenance of PSA protein expression at control levels. This was consistent with reporter gene experiments showing that Permixon failed to interfere with AR-mediated transcriptional activation of PSA and that both testosterone and DHT were equally effective at maintaining this activity. Our results demonstrate that despite Serenoa repens effective inhibition of 5alpha-reductase activity in the prostate, it did not suppress PSA secretion. Therefore, we confirm the therapeutic advantage of Serenoa repens over other 5alpha-reductase inhibitors as treatment with the phytotherapeutic agent will permit the continuous use of PSA measurements as a useful biomarker for prostate cancer screening and for evaluating tumour progression.

  1. Inhomogeneous speed effects on H2 vibrational line profiles in ternary mixtures

    NASA Astrophysics Data System (ADS)

    Joubert, P.; Bruet, X.; Bonamy, J.; Robert, D.; Chaussard, F.; Saint-Loup, R.; Berger, H.

    2000-12-01

    A study of speed inhomogeneous broadening of the hydrogen vibrational line profiles in the collisional regime for ternary mixtures is reported. The Q(1) line of H2 in H2-Ar-N2, H2-He-Ar, and H2-He-N2 mixtures is investigated by high resolution stimulated Raman spectroscopy for various concentrations and temperatures. A model, successfully used for binary mixtures, is extended to ternary mixtures. An excellent agreement is obtained between theory and experiment for H2-Ar-N2, by using the collisional parameters previously obtained from binary mixtures study. For H2-He-Ar and H2-He-N2, H2-He collisions play a "hardening" effect in the H2 soft speed memory mechanism for H2-Ar or H2-N2. The present experimental results allow us, via the frame of our model, to determine the "hardness" parameter values for H2-He (inaccessible from binary mixtures data) and to get an accurate description of the spectral line shape. This study should be useful for hydrogen coherent anti-Stokes Raman spectroscopy thermometry in H2/air flames at high pressure through its possible extension to the H2-N2-H2O system.

  2. DISTORTED CYCLOTRON LINE PROFILE IN CEP X-4 AS OBSERVED BY NuSTAR

    SciTech Connect

    Fürst, F.; Miyasaka, H.; Harrison, F. A.; Tendulkar, S. P.; Walton, D. J.; Pottschmidt, K.; Bhalerao, V.; Bachetti, M.; Boggs, S. E.; Craig, W. W.; Tomsick, J. A.; Christensen, F. E.; Grinberg, V.; Hailey, C. J.; Kennea, J. A.; Rahoui, F.; Stern, D.; Wilms, J.; Zhang, W. W.

    2015-06-20

    We present spectral analysis of Nuclear Spectroscopic Telescope Array and Swift observations of Cep X-4 during its outburst in 2014. We observed the source once during the peak of the outburst and once during the decay, finding good agreement in the spectral shape between the observations. We describe the continuum using a power law with a Fermi–Dirac cutoff at high energies. Cep X-4 has a very strong cyclotron resonant scattering feature (CRSF) around 30 keV. A simple absorption-like line with a Gaussian optical depth or a pseudo-Lorentzian profile both fail to describe the shape of the CRSF accurately, leaving significant deviations at the red side of the line. We characterize this asymmetry with a second absorption feature around 19 keV. The line energy of the CRSF, which is not influenced by the addition of this feature, shows a small but significant positive luminosity dependence. With luminosities between (1–6) × 10{sup 36} erg s{sup −1}, Cep X-4 is below the theoretical limit where such a correlation is expected. This behavior is similar to Vela X-1 and we discuss parallels between the two systems.

  3. Scanning electron microscope line-profile analysis of less-than-10-nm patterns

    NASA Astrophysics Data System (ADS)

    Hatano, Michio; Nakayama, Yoshinori; Hotta, Shoji; Momonoi, Yoshinori; Wang, Zhigang

    2017-06-01

    Scanning electron microscopes (SEMs) are widely used in various fields and have contributed to advances in nanotechnology. To analyse SEM images, it is necessary to consider the size of the probe electron (PE) beam and the range of PE scattering inside the pattern because they affect edge sharpness in SEM images. As the feature size of the sample drops to less than 10 nm, their effects become even more noticeable. In this study, we utilized Monte-Carlo simulation to clarify the effects of the size of the PE beam and the range of PE scattering for patterns with a line width less than 10 nm. Using a reference pattern with a known cross-sectional shape, we determined the PE beam full-width at half maximum (FWHM) for the simulation by fitting the simulation line profile to the experimental one. The resultant simulation SEM images matched the experimental ones for various PE beam FWHM conditions at acceleration voltages of 500 to 2400 V, even though the pattern dimensions differed from those of the reference pattern. These results indicate that analysis using Monte-Carlo simulation is an effective approach to clarifying SEM image formation and that the optimum observation conditions for patterns with a line width even less than 10 nm can be explored using simulation.

  4. STELLAR SURFACE MAGNETO-CONVECTION AS A SOURCE OF ASTROPHYSICAL NOISE. I. MULTI-COMPONENT PARAMETERIZATION OF ABSORPTION LINE PROFILES

    SciTech Connect

    Cegla, H. M.; Shelyag, S.; Watson, C. A.; Mathioudakis, M.

    2013-02-15

    We outline our techniques to characterize photospheric granulation as an astrophysical noise source. A four-component parameterization of granulation is developed that can be used to reconstruct stellar line asymmetries and radial velocity shifts due to photospheric convective motions. The four components are made up of absorption line profiles calculated for granules, magnetic intergranular lanes, non-magnetic intergranular lanes, and magnetic bright points at disk center. These components are constructed by averaging Fe I 6302 A magnetically sensitive absorption line profiles output from detailed radiative transport calculations of the solar photosphere. Each of the four categories adopted is based on magnetic field and continuum intensity limits determined from examining three-dimensional magnetohydrodynamic simulations with an average magnetic flux of 200 G. Using these four-component line profiles we accurately reconstruct granulation profiles, produced from modeling 12 Multiplication-Sign 12 Mm{sup 2} areas on the solar surface, to within {approx} {+-}20 cm s{sup -1} on a {approx}100 m s{sup -1} granulation signal. We have also successfully reconstructed granulation profiles from a 50 G simulation using the parameterized line profiles from the 200 G average magnetic field simulation. This test demonstrates applicability of the characterization to a range of magnetic stellar activity levels.

  5. LINE PROFILES OF CORES WITHIN CLUSTERS. II. SIGNATURES OF DYNAMICAL COLLAPSE DURING HIGH-MASS STAR FORMATION

    SciTech Connect

    Smith, Rowan J.; Shetty, Rahul; Klessen, Ralf S.; Beuther, Henrik; Bonnell, Ian A.

    2013-07-01

    Observations of atomic or molecular lines can provide important information about the physical state of star-forming regions. In order to investigate the line profiles from dynamical collapsing massive star-forming regions (MSFRs), we model the emission from hydrodynamic simulations of a collapsing cloud in the absence of outflows. By performing radiative transfer calculations, we compute the optically thick HCO{sup +} and optically thin N{sub 2}H{sup +} line profiles from two collapsing regions at different epochs. Due to large-scale collapse, the MSFRs have large velocity gradients, reaching up to 20 km s{sup -1} pc{sup -1} across the central core. The optically thin lines typically contain multiple velocity components resulting from the superposition of numerous density peaks along the line of sight. The optically thick lines are only marginally shifted to the blue side of the optically thin line profiles, and frequently do not have a central depression in their profiles due to self-absorption. As the regions evolve, the lines become brighter and the optically thick lines become broader. The lower-order HCO{sup +} (1-0) transitions are better indicators of collapse than the higher-order (4-3) transitions. We also investigate how the beam sizes affect profile shapes. Smaller beams lead to brighter and narrower lines that are more skewed to the blue in HCO{sup +} relative to the true core velocity, but show multiple components in N{sub 2}H{sup +}. High-resolution observations (e.g., with Atacama Large Millimeter Array) can test these predictions and provide insights into the nature of MSFRs.

  6. Evolution of the Iron K-Alpha Emission Line in the Black Hole Candidate GX339-4 During and Outburst Decay Phase

    NASA Technical Reports Server (NTRS)

    Feng, Y.; Zhang, S.-N.; Chen, W.; Cui, Wei

    1999-01-01

    The evolution of the iron K-alpha line emission feature was found from the black hole candidate GX339-4 when its X-ray flux (2 to 10 keV) decreased significantly. With RXTE observations, a broad line emission feature around 7 keV was detected in its quiescent and low flux state; while in the high flux state, an emission line feature around 6.4 keV was detected. A similar 6.4 keV line feature was also detected with previous ASCA observations in a high flux state. We consider that the evolution could be the evidence of the variations in the geometric structure and the physical properties of the accretion flow when the accretion rate changed. This is because that the 7 keV line feature can be produced by the radiative recombination cascade, collisional excitation, and fluorescence of Fe XXVI and Fe XXV, which can exist in a very high temperature plasma; while the 6.4 keV line feature can be produced by fluorescent K-alpha line emission of neutral iron atoms in the cold accretion disk. (copyright) 1999 American Astronomical Society. All rights reserved.

  7. Evolution of the Iron K-Alpha Emission Line in the Black Hole Candidate GX339-4 During and Outburst Decay Phase

    NASA Technical Reports Server (NTRS)

    Feng, Y.; Zhang, S.-N.; Chen, W.; Cui, Wei

    1999-01-01

    The evolution of the iron K-alpha line emission feature was found from the black hole candidate GX339-4 when its X-ray flux (2 to 10 keV) decreased significantly. With RXTE observations, a broad line emission feature around 7 keV was detected in its quiescent and low flux state; while in the high flux state, an emission line feature around 6.4 keV was detected. A similar 6.4 keV line feature was also detected with previous ASCA observations in a high flux state. We consider that the evolution could be the evidence of the variations in the geometric structure and the physical properties of the accretion flow when the accretion rate changed. This is because that the 7 keV line feature can be produced by the radiative recombination cascade, collisional excitation, and fluorescence of Fe XXVI and Fe XXV, which can exist in a very high temperature plasma; while the 6.4 keV line feature can be produced by fluorescent K-alpha line emission of neutral iron atoms in the cold accretion disk. (copyright) 1999 American Astronomical Society. All rights reserved.

  8. Global LINE-1 DNA methylation is associated with blood glycaemic and lipid profiles

    PubMed Central

    Pearce, Mark S; McConnell, James C; Potter, Catherine; Barrett, Laura M; Parker, Louise; Mathers, John C; Relton, Caroline L

    2012-01-01

    Background Patterns of DNA methylation change with age and these changes are believed to be associated with the development of common complex diseases. The hypothesis that Long Interspersed Nucleotide Element 1 (LINE-1) DNA methylation (an index of global DNA methylation) is associated with biomarkers of metabolic health was investigated in this study. Methods Global LINE-1 DNA methylation was quantified by pyrosequencing in blood-derived DNA samples from 228 individuals, aged 49–51 years, from the Newcastle Thousand Families Study (NTFS). Associations between log-transformed LINE-1 DNA methylation levels and anthropometric and blood biochemical measurements, including triglycerides, total cholesterol, low-density lipoprotein (LDL) and high-density lipoprotein (HDL) cholesterol, fasting glucose and insulin secretion and resistance were examined. Results Linear regression, after adjustment for sex, demonstrated positive associations between log-transformed LINE-1 DNA methylation and fasting glucose {coefficient 2.80 [95% confidence interval (CI) 0.39–5.22]}, total cholesterol [4.76 (95% CI 1.43–8.10)], triglycerides [3.83 (95% CI 1.30–6.37)] and LDL-cholesterol [5.38 (95% CI 2.12–8.64)] concentrations. A negative association was observed between log-transformed LINE-1 methylation and both HDL cholesterol concentration [−1.43 (95% CI −2.38 to −0.48)] and HDL:LDL ratio [−1.06 (95% CI −1.76 to −0.36)]. These coefficients reflect the millimoles per litre change in biochemical measurements per unit increase in log-transformed LINE-1 methylation. Conclusions These novel associations between global LINE-1 DNA methylation and blood glycaemic and lipid profiles highlight a potential role for epigenetic biomarkers as predictors of metabolic disease and may be relevant to future diagnosis, prevention and treatment of this group of disorders. Further work is required to establish the role of confounding and reverse causation in the observed associations

  9. Observations and Simulations of the Na i D1 Line Profiles in an M-class Solar Flare

    NASA Astrophysics Data System (ADS)

    Kuridze, D.; Mathioudakis, M.; Christian, D. J.; Kowalski, A. F.; Jess, D. B.; Grant, S. D. T.; Kawate, T.; Simões, P. J. A.; Allred, J. C.; Keenan, F. P.

    2016-12-01

    We study the temporal evolution of the Na i D1 line profiles in the M3.9 flare SOL2014-06-11T21:03 UT, using observations at high spectral resolution obtained with the Interferometric Bidimensional Spectrometer instrument on the Dunn Solar Telescope combined with radiative hydrodynamic simulations. Our results show a significant increase in the intensities of the line core and wings during the flare. The analysis of the line profiles from the flare ribbons reveals that the Na i D1 line has a central reversal with excess emission in the blue wing (blue asymmetry). We combine RADYN and RH simulations to synthesize Na i D1 line profiles of the flaring atmosphere and find good agreement with the observations. Heating with a beam of electrons modifies the radiation field in the flaring atmosphere and excites electrons from the ground state 3s 2S to the first excited state 3p 2P, which in turn modifies the relative population of the two states. The change in temperature and the population density of the energy states make the sodium line profile revert from absorption into emission. Furthermore, the rapid changes in temperature break the pressure balance between the different layers of the lower atmosphere, generating upflow/downflow patterns. Analysis of the simulated spectra reveals that the asymmetries of the Na i D1 flare profile are produced by the velocity gradients in the lower solar atmosphere.

  10. Observations and Simulations of the Na I D-1 Line profiles in an M-Class Solar Flare

    NASA Technical Reports Server (NTRS)

    Kuridze, D.; Mathioudakis, M.; Christian, D. J.; Kowalski, A. F.; Jess, D. B.; Grant, S. D. T.; Kawate, T.; Simoes, P. J. A.; Allred, J. C.; Keenan, F. P.

    2016-01-01

    We study the temporal evolution of the Na I D1 line profiles in the M3.9 flare SOL2014-06-11T21:03UT, using observations at high spectral resolution obtained with the Interferometric Bidimensional Spectrometer instrumentation the Dunn Solar Telescope combined with radiative hydrodynamic simulations. Our results show a significant increase in the intensities of the line core and wings during the flare. The analysis of the line profiles from the flare ribbons reveals that the Na I D1 line has a central reversal with excess emission in the blue wing (blue asymmetry).We combine RADYN and RH simulations to synthesize Na I D1 line profiles of the flaring atmosphere and find good agreement with the observations. Heating with a beam of electrons modifies the radiation field in the flaring atmosphere and excites electrons from the ground state 3s 2S to the first excited state 3p 2P, which in turn modifies the relative population of the two states. The change in temperature and the population density of the energy states make the sodium line profile revert from absorption into emission. Furthermore, the rapid changes in temperature break the pressure balance between the different layers of the lower atmosphere, generating upflow/downflow patterns. Analysis of the simulated spectra reveals that the asymmetries of the Na I D1 flare profile are produced by the velocity gradients in the lower solar atmosphere.

  11. Evidence for the Importance of Resonance Scattering in X-Ray Emission Line Profiles of the O Star ζ Puppis

    NASA Astrophysics Data System (ADS)

    Leutenegger, Maurice A.; Owocki, Stanley P.; Kahn, Steven M.; Paerels, Frits B. S.

    2007-04-01

    We fit the Doppler profiles of the He-like triplet complexes of O VII and N VI in the X-ray spectrum of the O star ζ Pup, using XMM-Newton RGS data collected over ~400 ks of exposure. We find that they cannot be well fit if the resonance and intercombination lines are constrained to have the same profile shape. However, a significantly better fit is achieved with a model incorporating the effects of resonance scattering, which causes the resonance line to become more symmetric than the intercombination line for a given characteristic continuum optical depth τ*. We discuss the plausibility of this hypothesis, as well as its significance for our understanding of Doppler profiles of X-ray emission lines in O stars.

  12. Changes in growth and lipid profiles of silk gland, mid-gut biochemical composition of silkworm, Bombyx mori L. on exposure to prostaglandin F2alpha.

    PubMed

    Miao, Yun-gen; Jiang, Li-jun

    2003-01-01

    The growth of the silkworm is influenced by the outside and inside environment. Among them, the category of various endocrine hormone of inside is the main factors that adjust the characters such as growth and propagate. In this experiment, we applied different dosage of prostaglandin to the fourth and fifth instar silkworm to observe the effects of prostaglandin F2alpha (PGF2alpha) on silk gland growth, mid-gut biochemical constituents and the lipid profiles of silkworm larva, Bombyx mori L. The weight of the posterior silk gland increased significantly (P < 0.001) by 20-24% after treatment with PGF2alpha. The increase in the lipid profiles except lipase activity suggests that the silk gland had more synthetic activity that might reflect in active spinning of silkworm larva. The changes of total proteins, free amino acids and alkaline phosphatase in mid-gut of control and PGF2alpha treated silkworm, B. mori L. indicate that PGF2alpha favored stimulatory effect on physiology of digestion, absorption and transportation of nutrients which might influence on the growth and development of larva.

  13. Gene expression profiling of hematologic malignant cell lines resistant to oncolytic virus treatment

    PubMed Central

    Lee, Nam Hee; Kim, Mikyung; Oh, Sung Yong; Kim, Seong-Geun; Kwon, Hyuk-Chan; Hwang, Tae-Ho

    2017-01-01

    Pexa-Vec (pexastimogene devacirpvec; JX-594) has emerged as an attractive tool in oncolytic virotherapy. Pexa-Vec demonstrates oncolytic and immunotherapeutic mechanisms of action. But the determinants of resistance to Pexa-Vec are mostly unknown. We treated hemoatologic malignant cells with Pexa-Vec and examined the gene-expression pattern of sensitive and resistant cells. Human myeloid malignant cell lines (RPMI-8226, IM-9, K562, THP-1) and lymphoid cancer cell lines (MOLT4, CCRF-CEM, Ramos, U937) were treated with Pexa-Vec. Pexa-Vec was cytotoxic on myeloid cell lines in a dose-dependent manner, and fluorescent imaging and qPCR revealed that Pexa-Vec expression was low in RAMOS than IM-9 after 24 hrs and 48 hrs of infection. Gene expression profiles between two groups were analyzed by microarray. Genes with at least 2-fold increase or decrease in their expression were identified. A total of 660 genes were up-regulated and 776 genes were down-regulated in lymphoid cancer cell lines. The up- and down-regulated genes were categorized into 319 functional gene clusters. We identified the top 10 up-regulated genes in lymphoid cells. Among them three human genes (LEF1, STAMBPL1, and SLFN11) strongly correlated with viral replication. Up-regulation of PVRIG, LPP, CECR1, Arhgef6, IRX3, IGFBP2, CD1d were related to resistant to Pexa-Vec. In conclusion, lymphoid malignant cells are resistant to Pexa-Vec and displayed up-regulated genes associated with resistance to oncolytic viral therapy. These data provide potential targets to overcome resistance, and suggest that molecular assays may be useful in selecting patients for further clinical trials with Pexa-Vec. PMID:27901484

  14. High-resolution H-band spectroscopy of Be stars with SDSS-III/apogee. I. New Be stars, line identifications, and line profiles

    SciTech Connect

    Chojnowski, S. Drew; Majewski, Steven R.; Hall, Matthew; Beaton, Rachael; Burton, Adam; Damke, Guillermo; Wilson, John; Whelan, David G.; Wisniewski, John P.; Shetrone, Matthew; Eikenberry, Steve; Hasselquist, Sten; Holtzman, Jon A.; Brewington, Howard; Brinkmann, J.; Mészáros, Szabolcs; Nidever, David; Schneider, Donald P.; Zasowski, Gail; Bizyaev, Dmitry; and others

    2015-01-01

    The Apache Point Observatory Galactic Evolution Experiment (APOGEE) has amassed the largest ever collection of multi-epoch, high-resolution (R∼22,500), H-band spectra for B-type emission line (Be) stars. These stars were targeted by APOGEE as telluric standard stars and subsequently identified via visual inspection as Be stars based on H i Brackett series emission or shell absorption in addition to otherwise smooth continua and occasionally non-hydrogen emission features. The 128/238 APOGEE Be stars for which emission had never previously been reported serve to increase the total number of known Be stars by ∼6%. Because the H band is relatively unexplored compared to other wavelength regimes, we focus here on identification of the H-band lines and analysis of the emission peak velocity separations (Δv{sub p}) and emission peak intensity ratios (V/R) of the usually double-peaked H i and non-hydrogen emission lines. H i Br11 emission is found to preferentially form in the circumstellar disks at an average distance of ∼2.2 stellar radii. Increasing Δv{sub p} toward the weaker Br12–Br20 lines suggests these lines are formed interior to Br11. By contrast, the observed IR Fe ii emission lines present evidence of having significantly larger formation radii; distinctive phase lags between IR Fe ii and H i Brackett emission lines further supports that these species arise from different radii in Be disks. Several emission lines have been identified for the first time including C i 16895, a prominent feature in the spectra for almost a fifth of the sample and, as inferred from relatively large Δv{sub p} compared to the Br11–Br20, a tracer of the inner regions of Be disks. Emission lines at 15760 Å and 16781 Å remain unidentified, but usually appear along with and always have similar line profile morphology to Fe ii 16878. Unlike the typical metallic lines observed for Be stars in the optical, the H-band metallic lines, such as Fe ii 16878, never exhibit any

  15. High-Resolution H-Band Spectroscopy of Be Stars With SDSS-III/Apogee: I. New Be Stars, Line Identifications, and Line Profiles

    NASA Astrophysics Data System (ADS)

    Chojnowski, S. Drew; Whelan, David G.; Wisniewski, John P.; Majewski, Steven R.; Hall, Matthew; Shetrone, Matthew; Beaton, Rachael; Burton, Adam; Damke, Guillermo; Eikenberry, Steve; Hasselquist, Sten; Holtzman, Jon A.; Mészáros, Szabolcs; Nidever, David; Schneider, Donald P.; Wilson, John; Zasowski, Gail; Bizyaev, Dmitry; Brewington, Howard; Brinkmann, J.; Ebelke, Garrett; Frinchaboy, Peter M.; Kinemuchi, Karen; Malanushenko, Elena; Malanushenko, Viktor; Marchante, Moses; Oravetz, Daniel; Pan, Kaike; Simmons, Audrey

    2015-01-01

    The Apache Point Observatory Galactic Evolution Experiment (APOGEE) has amassed the largest ever collection of multi-epoch, high-resolution (R˜22,500), H-band spectra for B-type emission line (Be) stars. These stars were targeted by APOGEE as telluric standard stars and subsequently identified via visual inspection as Be stars based on H i Brackett series emission or shell absorption in addition to otherwise smooth continua and occasionally non-hydrogen emission features. The 128/238 APOGEE Be stars for which emission had never previously been reported serve to increase the total number of known Be stars by ˜6%. Because the H band is relatively unexplored compared to other wavelength regimes, we focus here on identification of the H-band lines and analysis of the emission peak velocity separations (Δ{{v}p}) and emission peak intensity ratios (V/R) of the usually double-peaked H i and non-hydrogen emission lines. H i Br11 emission is found to preferentially form in the circumstellar disks at an average distance of ˜2.2 stellar radii. Increasing Δ{{v}p} toward the weaker Br12-Br20 lines suggests these lines are formed interior to Br11. By contrast, the observed IR Fe ii emission lines present evidence of having significantly larger formation radii; distinctive phase lags between IR Fe ii and H i Brackett emission lines further supports that these species arise from different radii in Be disks. Several emission lines have been identified for the first time including C i 16895, a prominent feature in the spectra for almost a fifth of the sample and, as inferred from relatively large Δ{{v}p} compared to the Br11-Br20, a tracer of the inner regions of Be disks. Emission lines at 15760 Å and 16781 Å remain unidentified, but usually appear along with and always have similar line profile morphology to Fe ii 16878. Unlike the typical metallic lines observed for Be stars in the optical, the H-band metallic lines, such as Fe ii 16878, never exhibit any evidence of

  16. Gene expression profiling reveals novel regulation by bisphenol-A in estrogen receptor-{alpha}-positive human cells

    SciTech Connect

    Singleton, David W.; Feng, Yuxin; Yang, Jun; Puga, Alvaro; Lee, Adrian V.; Khan, Sohaib A. . E-mail: sohaib.khan@uc.edu

    2006-01-15

    Bisphenol-A (BPA) shows proliferative actions in uterus and mammary glands and may influence the development of male and female reproductive tracts in utero or during early postnatal life. Because of its ability to function as an estrogen receptor (ER) agonist, BPA has the potential to disrupt normal endocrine signaling through regulation of ER target genes. Some genes are regulated by both estradiol (E2) and BPA, but those exclusive to either agent have not been described. Using a yeast strain incorporating a vitellogenin A2 ERE-LacZ reporter gene into the genome, we found that BPA induced expression of the reporter in colonies transformed with the ER{alpha} expression plasmid, illustrating BPA-mediated regulation within a chromatin context. Additionally, a reporter gene transiently transfected into the endometrial cancer (Ishikawa) cell line also showed BPA activity, although at 100-fold less potency than E2. To compare global gene expression in response to BPA and E2, we used a variant of the MCF-7 breast cancer cell line stably expressing HA-tagged ER{alpha}. Cultures were treated for 3 h with an ethanol vehicle, E2 (10{sup -8} M), or BPA (10{sup -6} M), followed by isolation of RNA and microarray analysis with the human U95A probe array (Affymetrix, Santa Clara, CA, USA). More than 300 genes were changed 2-fold or more by either or both agents, with roughly half being up-regulated and half down-regulated. A number of growth- and development-related genes, such as HOXC1 and C6, Wnt5A, Frizzled, TGF{beta}-2, and STAT inhibitor 2, were found to be affected exclusively by BPA. We used quantitative real-time PCR to verify regulation of the HOXC6 gene, which showed decreased expression of approximately 2.5-fold by BPA. These results reveal novel effects by BPA and E2, raising interesting possibilities regarding the role of endocrine disruptors in sexual development.

  17. Chromatographic studies of drug interactions with alpha1-acid glycoprotein by ultrafast affinity extraction and peak profiling.

    PubMed

    Beeram, Sandya; Bi, Cong; Zheng, Xiwei; Hage, David S

    2017-05-12

    Interactions with serum proteins such as alpha1-acid glycoprotein (AGP) can have a significant effect on the behavior and pharmacokinetics of drugs. Ultrafast affinity extraction and peak profiling were used with AGP microcolumns to examine these processes for several model drugs (i.e., chlorpromazine, disopyramide, imipramine, lidocaine, propranolol and verapamil). The association equilibrium constants measured for these drugs with soluble AGP by ultrafast affinity extraction were in the general range of 10(4)-10(6)M(-1) at pH 7.4 and 37°C and gave good agreement with literature values. Some of these values were dependent on the relative drug and protein concentrations that were present when using a single-site binding model; these results suggested a more complex mixed-mode interaction was actually present, which was also then used to analyze the data. The apparent dissociation rate constants that were obtained by ultrafast affinity extraction when using a single-site model varied from 0.14 to 7.0s(-1) and were dependent on the relative drug and protein concentrations. Lower apparent dissociation rate constants were obtained by this approach as the relative amount of drug versus protein was decreased, with the results approaching those measured by peak profiling at low drug concentrations. This information should be useful in better understanding how these and other drugs interact with AGP in the circulation. In addition, the chromatographic approaches that were optimized and used in this report to examine these systems can be adapted for the analysis of other solute-protein interactions of biomedical interest. Copyright © 2017 Elsevier B.V. All rights reserved.

  18. EFFECT OF HORMONE THERAPY AND CALCITRIOL ON SERUM LIPID PROFILE IN POSTMENOPAUSAL ELDERLY WOMEN: ASSOCIATION WITH ESTROGEN RECEPTOR ALPHA GENOTYPES

    PubMed Central

    SAI, ADARSH J.; GALLAGHER, J. CHRISTOPHER; FANG, XIANG

    2011-01-01

    Objective Examine the effect of conjugated equine estrogens alone (ET), conjugated equine estrogens plus medroxyprogesterone (EPT), calcitriol alone, calcitriol plus EPT/ET or placebo on serum lipid profile and analyze the interaction with estrogen receptor alpha gene single nucleotide polymorphisms (ESR-α SNPs) on response to therapy. Methods 489 postmenopausal women > 65 years age enrolled in 3-year double blind placebo-controlled clinical trial Results In both intent to treat and complier (>80% adherent) analysis, there was significant increase in serum high-density lipoproteins (HDL), significant decrease in serum low-density lipoproteins (LDL) and LDL:HDL ratio in all hormone treatment groups compared to placebo (p<0.05). However, serum triglycerides and very low-density lipoproteins (VLDL) increased in EPT and ET+ calcitriol groups' versus placebo (p <0.05). ESR-α SNPs PvuII and XbaI appeared to have a significant effect on response to treatment. Genotypes containing p allele showed significantly greater decrease in serum cholesterol and VLDL than those having P allele in the ET plus calcitriol group (p<0.05) and those with x allele had significantly greater decrease in serum cholesterol in HT plus calcitriol group at the end of 3 years versus X allele and a greater decrease in serum LDL in alleles x versus X in ET plus calcitriol group (p<0.05). Conclusions ET with or without progesterone had a favorable effect on lipid profile in postmenopausal elderly women and this was dependent on estrogen receptor SNP's – PvuII and XbaI. However, this interaction with ESR-α SNPs need to be confirmed in larger studies. PMID:21712736

  19. Profile of the alpha-bungarotoxin-binding regions on the extracellular part of the alpha-chain of Torpedo californica acetylcholine receptor.

    PubMed Central

    Mulac-Jericevic, B; Atassi, M Z

    1987-01-01

    The continuous alpha-neurotoxin-binding regions on the extracellular part (residues 1-210) of the alpha-chain of Torpedo californica acetylcholine receptor were localized by reaction of 125I-labelled alpha-bungarotoxin with synthetic overlapping peptides spanning this entire part of the chain. The specificity of the binding was confirmed by inhibition with unlabelled toxin and, for appropriate peptides, with unlabelled anti-(acetylcholine receptor) antibodies. Five toxin-binding regions were localized within residues 1-10, 32-41, 100-115, 122-150 and 182-198. The third, fourth and fifth (and to a lesser extent the first and second) toxin-binding regions overlapped with regions recognized by anti-(acetylcholine receptor) antibodies. The five toxin-binding regions may be distinct sites or, alternatively, different 'faces' in one (or more) sites. PMID:3435488

  20. Profile of Tumour Necrosis Factor Alpha -308 G/A Gene Polymorphism in Psoriatic Patients in Karnataka, India

    PubMed Central

    Rajesh, Deepa; Chowdappa, Chaitra; Gurumurthy, Rajesh; Kutty, A.V. Moideen

    2017-01-01

    Introduction Tumour necrosis factor-alpha (TNFα) gene -308G/A polymorphism (rs1800629) are associated with psoriasis in several populations worldwide. Presently, there is no literature on the status of this polymorphism in the South Indian population. Aim To determine the profile of TNFα -308G/A polymorphism among psoriatic patients. Materials and Methods This case-control study involved 74 patients with Psoriasis Vulgaris (PsV) and 74 age and gender matched healthy individuals. Patients were recruited from the Department of Dermatology of R.L. Jalappa Hospital and Research Center, Tamaka, Kolar, Karnataka, India, from March 2014 to March 2016. TNFα -308G/A polymorphism was genotyped by Polymerase Chain Reaction-Restriction Fragment Length Polymorphism (PCR-RFLP) method. Results The frequency of TNFα -308A allele 7.4% among psoriatic and 8.8% among non-psoriatic individuals. The difference was not statistically significant (p=0.82). Conclusion Our results indicate that TNFα gene -308G/A polymorphism is not a significant marker for the risk of developing PsV among South Indian (Karnataka) psoriatic patients.

  1. Free surface profile of evaporative liquids at the vicinity of the contact line

    NASA Astrophysics Data System (ADS)

    Houssainy, Sammy; Kavehpour, Pirouz

    2014-11-01

    Interfacial phenomenon, specifically those associated with evaporation from thin liquid films near the contact line of a liquid drop, play a major role in many current engineering applications which require high local heat fluxes, as evident in heat pipes, grooved evaporators, fuel cells and suction nucleate boiling devices. This study will prove useful in the improvement of such applications. Fluoresces microscopy was used as our main technique of investigating the free surface profiles of evaporative liquids, as it delivers sufficient range and resolution to address the challenge of capturing the microscopic and macroscopic aspects of this phenomenon. Subsequent to our experimental findings, the results are compared with non-volatile liquids for both contact angle and free surface structures.

  2. Line-profile and continuum variations of the contact binary SV Centauri

    NASA Technical Reports Server (NTRS)

    Rahe, J.; Drechsel, H.; Wargau, W.

    1982-01-01

    A total of five high and ten low dispersion UV spectra of the interacting contact binary SV Centauri obtained between 1979 and 1982 are analyzed. The low resolution observations cover the whole phase range, while a few selected phases were observed in high dispersion. The UV data were complemented with optical photometric and spectroscopic observations, in order to determine the tructure and absolute dimensions of the system. The profiles of prominent UV resonance and metastable lines undergo drastic changes with phase angle and time. Their overall appearance indicates relatively strong mass loss from the system, exhibiting pronounced variations of the stellar wind. The far UV continuum distribution suggests the presence of a luminous hot radiation source with maximum emission in the soft X-ray range, which is most apparently seen during the first quadrature phase, while it is weakest close to primary minimum. The case exchange and mass loss process as well as the evolutionary stage of SV Centauri are discussed.

  3. Magnetic field connected fast line profile variability in spectra of bright O supergiants

    NASA Astrophysics Data System (ADS)

    Kholtygin, A.; Brown, J.; Fabrika, S.; Surkov, A.

    2004-10-01

    Results of study of fast line profile variability (lpv) in the spectra of selected bright O-stars are reported. A regular component of lpv in the spectra of the star λ Ori A with estimated period P≈ 3 d have been detected. We suppose that the formation of long time-scale regular components of lpv can be explained in the framework of the magnetically confined wind-shock (MCWS) model of Babel & Montmerle (1997a). In the context of testing the MCWS model the program of searching for weak magnetic fields in bright O and early B stars is outlined. The possibility of measuring weak longitudinal magnetic fields (Bl ≈ 100 G) is demonstrated.

  4. Comparative transcriptomic profiling of two tomato lines with different ascorbate content in the fruit.

    PubMed

    Di Matteo, Antonio; Sacco, Adriana; De Stefano, Rosalba; Frusciante, Luigi; Barone, Amalia

    2012-12-01

    In recent years, interest in tomato breeding for enhanced antioxidant content has increased as medical research has pointed to human health benefits from antioxidant dietary intake. Ascorbate is one of the major antioxidants present in tomato, and little is known about mechanisms governing ascorbate pool size in this fruit. In order to provide further insights into genetic mechanisms controlling ascorbate biosynthesis and accumulation in tomato, we investigated the fruit transcriptome profile of the Solanum pennellii introgression line 10-1 that exhibits a lower fruit ascorbate level than its cultivated parental genotype. Our results showed that this reduced ascorbate level is associated with an increased antioxidant demand arising from an accelerated oxidative metabolism mainly involving mitochondria, peroxisomes, and cytoplasm. Candidate genes for controlling ascorbate level in tomato fruit were identified, highlighting the role of glycolysis, glyoxylate metabolism, and purine breakdown in modulating the ascorbate pool size.

  5. A reanalysis of the observed interplanetary hydrogen L. cap alpha. emission profiles and the derived local interstellar gas temperature and velocity

    SciTech Connect

    Wu, F.M.; Judge, D.L.

    1980-07-01

    An improved model of the interplanetary emission profile is presented. In this model we utilize a new version of the modified Danby-Camm velocity distribution function to calculate emission profiles, and it appears to be very efficient. Using this model, the hydrogen L..cap alpha.. profiles are determined for various viewing directions, and at a solar distance of 1 AU. It is found that the linewidth of the emission profiles and their Doppler shifts depend strongly on the viewing direction, as well as the assumed interstellar temperature. Previous determinations of the interstellar temperature T/sub 0/ and the inflow velocity V/sub b/, using approximate theoretical hydrogen profiles, are found to be inadequate. These values are recalculated and are determined to be T/sub 0/=7000 +- 1200 K and V/sub b/=19 +- 3 km s/sup -1/.

  6. Long-term spectroscopic monitoring of BA-type supergiants. I. Halpha_ line-profile variability.

    NASA Astrophysics Data System (ADS)

    Kaufer, A.; Stahl, O.; Wolf, B.; Gaeng, T.; Gummersbach, C. A.; Kovacs, J.; Mandel, H.; Szeifert, T.

    1996-01-01

    We have obtained time series of spectra in the wavelength range 4000-6800 A over several months with high S/N and high resolution in wavelength (λ/{DELTA}λ=~20000) and time ({DELTA}t=~1d) of the late-type B and early-type A supergiants HD91619 (B7Ia), βOri (B8Ia), HD96919 (B9Ia), HD92207 (A0Ia), HD100262 (A2Ia) and αCyg (A2Ia). Halpha_ is found to show broad emission extended to about +/-1200km/s for all objects except αCyg. Due to the lack of strong line-emission in Halpha_ the electron-scattered photons are expected to originate in deep atmospheric layers. In all of the objects the Halpha_-line profiles are found to be highly variable on different time scales reaching from days to months. Patterns of variation in Halpha_ are found to be quite symmetric about the systemic velocity and are mainly due to variable blue and red-shifted emission superimposed on almost constant photospheric and/or wind profiles. These V/R variations are interpreted in terms of axial symmetry of the envelopes of these objects. Time-series analyses of the variations reveal Halpha_ time scales up to a factor of 6 longer than expected radial fundamental pulsation periods but consistent with rotational periods. Therefore, rotational modulation as a possible source of variability is concluded. Corotating weak magnetic surface structures are suggested as the source for a rotationally modulated lower wind region. Suddenly appearing deep and highly blue-shifted absorptions in Halpha_ are ascribed to instabilities of the ionization structure of the wind. Outwards propagating discrete absorption components have been observed only once in HD92207.

  7. The effect of line-tying on the radiative MHD stability of coronal plasmas with radial pressure profile

    NASA Technical Reports Server (NTRS)

    An, C.-H.

    1984-01-01

    The role of photospheric line-tying, i.e., solar coronal loop structures, was investigated in terms of the effect on radiative modes and the influence that different radial pressure profiles exert on the effects of line-tying on radiative MHD stability. Energy is assumed dissipated by heat conduction and radiation and zero- and first-order solutions are obtained for the radiative time scales. Line-tying is a magnetic tension in the zero-order MHD mode and produces stability. Heat conduction occurs along bent field lines in first-order MHD modes when plasmas cross the field lines. Irradiated cool-core loops can experience MHD instabilities in the cylinder center, while line-tying can stabilize the plasma in the surrounding hot medium. Line-tying also adds stability to magnetosonic and condensation modes.

  8. Precision Fe K-Alpha and Fe K-Beta Line Spectroscopy of the Seyfert 1.9 Galaxy NGC 2992 with Suzaku

    NASA Technical Reports Server (NTRS)

    Yaqoob, Tahir; Murphy, Kendrah D.; Griffiths, Richard E.; Haba, Yoshito; Inoue, Hajime; Itoh, Takeshi; Kelley, Richard; Kokubun, Motohide; Markowitz, Alex; Mushotzky, Richard; Okajima, Takashi; Ptak, Andrew; Reeves, James; Selemitos, Peter J.; Takahashi, Tadayuki; Terashima, Yuichi

    2006-01-01

    We present detailed time-averaged X-ray spectroscopy in the 0.5-10 keV band of the Seyfert 1.9 galaxy NGC 2992 with the Suzaku X-ray Imaging Spectrometers (XIS). The source had a factor approximately 3 higher 2-10 keV flux (approximately 1.2 x l0(exp -11) erg per square cm per s) than the historical minimum and a factor approximately 7 less than the historical maximum. The XIS spectrum of NGC 2992 can be described by several components. There is a primary continuum, modeled as a power-law with a photon index of Gamma = 1.57(sup +0.06) (sup -0.03) that is obscured by a Compton-thin absorber with a column density of 8.01(sup +0.6) (sup -0.5)x l0 (exp 21) per square cm. . There is another, weaker, unabsorbed power-law component (modeled with the same slope as the primary), that is likely to be due to the primary continuum being electron-scattered into our line-of-sight by a region extended on a scale of hundreds of parsecs. We measure the Thomson depth of the scattering zone to be Tau = 0.072 +/- 0.021. An optically-thin thermal continuum emission component, which probably originates in the same extended region, is included in the model and yields a temperature and luminosity of KT = 0.656(sup +0.088) (sup -0.0.61) keV and approximately 1.2 +/- 0.4 x l0 (exp 40) erg per s respectively. We detect an Fe K emission complex which we model with broad and narrow lines and we show that the intensities of the two components are decoupled at a confidence level > 3 sigma. The broad Fe K alpha line has an equivalent width of 118(sup +32) (sup -61) eV and could originate in an accretion disk (with inclination angle greater than approximately 30 deg) around the putative central black hole. The narrow Fe K alpha line has an equivalent width of 1632(sup +47) (sup -26) eV and is unresolved (FWHM < 4630 km per s) and likely originates in distant matter. The absolute flux in the narrow line implies that the column density out of the line-of-sight could be much higher than measured in

  9. Analysis of H α spectral line profile in a DC hydrogen discharge

    NASA Astrophysics Data System (ADS)

    Bozhinova, I.; Iordanova, S.; Pashov, A.

    2016-11-01

    This contribution reports an experimental study of characteristics of the neutrals in a DC hydrogen discharge, designed for production of NiH. The investigations are carried out at gas pressure in the range p  =  (200-1600) mTorr and current I  =  200 mA. Optical emission spectroscopy diagnostics are based on analysis of the H α line profile. The profile is formed from the emission of three energetically distinct groups of atoms in the n  =  3 excited state. The first one is the group of thermalized atoms, with a mean energy of about 0.1 eV, the second—fast atoms, with mean energies about 10 eV and the third—superfast atoms with a mean energy of about 90 eV. The experimental technique leads to accurate values of the relative densities of these atoms and their mean energies for various working conditions.

  10. On the Doppler Shift and Asymmetry of Stokes Profiles of Photospheric FeI and Chromospheric MgI Lines

    DTIC Science & Technology

    2010-06-15

    10/09 ON THE DOPPLER SHIFT AND ASYMMETRY OF STOKES PROFILES OF PHOTOSPHERIC Fe I AND CHROMOSPHERIC Mg I LINES NA DENG AND DEBI PRASAD CHOUDHARY...photospheric (Fe I 630.15 and 630.25 nm) and chromospheric (Mg I b2 517.27 nm) lines. The data were obtained with the HAO/NSO Advanced Stokes...among the three spectral lines, which helps us to better understand the chromospheric lines and the magnetic and flow fields in different magnetic

  11. Effects of carbocisteine on sialyl-Lewis x expression in an airway carcinoma cell line stimulated with tumor necrosis factor-alpha.

    PubMed

    Ishibashi, Yuji; Imai, Shigeru; Inouye, Yoshio; Okano, Teruo; Taniguchi, Akiyoshi

    2006-01-20

    Carbocisteine is a mucoregulatory drug normalizing sialic acid and fucose contents in mucins through the regulation of glycosyltransferase activities. Tumor necrosis factor (TNF)-alpha-induced overexpression of sialyl-Lewis x epitopes, containing sialic acid and fucose, in mucins were previously reported to be regulated by glycosyltransferase mRNAs expression through phosphatidyl inositol-specific phospholipase C (PI-PLC) signaling pathways [Ishibashi, Y., Inouye, Y., Okano, T., Taniguchi, A., 2005. Regulation of sialyl-Lewis x epitope expression by TNF-alpha and EGF in an airway carcinoma cell line. Glycoconj. J. 22, 53-62]. To investigate the mechanism behind the mucoregulatory action of carbocisteine, the present study evaluated the effects of carbocisteine on TNF-alpha-induced overexpression of sialyl-Lewis x epitopes in NCI-H292 cells. 100 mug/ml of carbocisteine was able to inhibit the TNF-alpha-induced expression of hST3GallV mRNA, FUT3 mRNA, C2/4GnT mRNA and sialyl-Lewis x epitopes as well as the TNF-alpha-induced activity of PI-PLC in NCI-H292 cells. These findings suggest that carbocisteine may normalize the sialyl-Lewis x epitopes expression in mucins through the inhibition of cellular PI-PLC activity in vivo.

  12. At-line prediction of fatty acid profile in chicken breast using near infrared reflectance spectroscopy.

    PubMed

    De Marchi, M; Riovanto, R; Penasa, M; Cassandro, M

    2012-03-01

    Near infrared reflectance (NIR) spectroscopy was evaluated as at-line technique to predict FA profile of chicken breast directly at the slaughterhouse. Intact breasts of 214 chickens were scanned by applying a fiber optic probe to the Pectoralis superficialis muscle. Meat samples were analyzed by gas chromatography as the reference method for the determination of FA composition. Calibration equations were developed considering NIR wavelengths between 1100 and 1830nm, and modified partial least square (MPLS) was chosen as the chemometrics method to perform the calibrations. Different mathematical pre-treatments were tested and the best calibration equation for each FA was retained. Near infrared reflectance spectroscopy did not result in satisfactory predictions of FA. The best predictions were observed for oleic acid (C18:1n-9), monounsaturated FA (MUFA), and polyunsaturated FA (PUFA), and for a few minor FA. Results suggest that for chicken breast muscle, a lean meat, it was not possible to predict FA using NIR spectroscopy as an at-line technique in the abattoir. Copyright © 2011. Published by Elsevier Ltd.

  13. Extracellular matrix proteins expression profiling in chemoresistant variants of the A2780 ovarian cancer cell line.

    PubMed

    Januchowski, Radosław; Zawierucha, Piotr; Ruciński, Marcin; Nowicki, Michał; Zabel, Maciej

    2014-01-01

    Ovarian cancer is the leading cause of death among gynaecological malignancies. Extracellular matrix (ECM) can affect drug resistance by preventing the penetration of the drug into cancer cells and increased resistance to apoptosis. This study demonstrates alterations in the expression levels of ECM components and related genes in cisplatin-, doxorubicin-, topotecan-, and paclitaxel-resistant variants of the A2780 ovarian cancer cell line. Affymetrix Gene Chip Human Genome Array Strips were used for hybridisations. The genes that had altered expression levels in drug-resistant sublines were selected and filtered by scatter plots. The genes that were up- or downregulated more than fivefold were selected and listed. Among the investigated genes, 28 genes were upregulated, 10 genes were downregulated, and two genes were down- or upregulated depending on the cell line. Between upregulated genes 12 were upregulated very significantly--over 20-fold. These genes included COL1A2, COL12A1, COL21A1, LOX, TGFBI, LAMB1, EFEMP1, GPC3, SDC2, MGP, MMP3, and TIMP3. Four genes were very significantly downregulated: COL11A1, LAMA2, GPC6, and LUM. The expression profiles of investigated genes provide a preliminary insight into the relationship between drug resistance and the expression of ECM components. Identifying correlations between investigated genes and drug resistance will require further analysis.

  14. Integrative fitting of absorption line profiles with high accuracy, robustness, and speed

    NASA Astrophysics Data System (ADS)

    Skrotzki, Julian; Habig, Jan Christoph; Ebert, Volker

    2014-08-01

    The principle of the integrative evaluation of absorption line profiles relies on the numeric integration of absorption line signals to retrieve absorber concentrations, e.g., of trace gases. Thus, it is a fast and robust technique. However, previous implementations of the integrative evaluation principle showed shortcomings in terms of accuracy and the lack of a fit quality indicator. This has motivated the development of an advanced integrative (AI) fitting algorithm. The AI fitting algorithm retains the advantages of previous integrative implementations—robustness and speed—and is able to achieve high accuracy by introduction of a novel iterative fitting process. A comparison of the AI fitting algorithm with the widely used Levenberg-Marquardt (LM) fitting algorithm indicates that the AI algorithm has advantages in terms of robustness due to its independence from appropriately chosen start values for the initialization of the fitting process. In addition, the AI fitting algorithm shows speed advantages typically resulting in a factor of three to four shorter computational times on a standard personal computer. The LM algorithm on the other hand retains advantages in terms of a much higher flexibility, as the AI fitting algorithm is restricted to the evaluation of single absorption lines with precomputed line width. Comparing both fitting algorithms for the specific application of in situ laser hygrometry at 1,370 nm using direct tunable diode laser absorption spectroscopy (TDLAS) suggests that the accuracy of the AI algorithm is equivalent to that of the LM algorithm. For example, a signal-to-noise ratio of 80 and better typically yields a deviation of <1 % between both fitting algorithms. The properties of the AI fitting algorithm make it an interesting alternative if robustness and speed are crucial in an application and if the restriction to a single absorption line is possible. These conditions are fulfilled for the 1,370 nm TDLAS hygrometry at the

  15. Hour-timescale profile variations in the broad Balmer lines of the Seyfert galaxy Hour-timescale profile variations in the broad Balmer lines of the Seyfert galaxy Markarian 6

    NASA Astrophysics Data System (ADS)

    Asatrian, Norayr S.

    2014-07-01

    Part of results of the multi-epoch intranight optical spectroscopic monitoring of the Markarian 6 nucleus carried out at the telescopes of 6-m of the Special Astrophysical Observatory (Russia), 2.6-m of the Byurakan Astrophysical Observatory (Armenia) and 2-m of the Tautenburg Observatory (Germany) is presented. Observations were made in 1979, 1986, 1988-1991 and 2007-2009 during a total of 33 nights with an average sampling rate of 4 spectra per night. TV-scanner and long-slit spectrographs equipped with Image Tube and CCD detector arrays were used. Altogether we analyzed 110 Hβ and 58 Hα region spectra to search for intranight variability in the broad hydrogen emission line profiles. The typical spectral resolutions were 4 Å for scanner spectra, 6 Å for photographic spectra, and 5 Å and 10 Å for CCD spectra. The S/N ratio at the continuum level near the Hβ and Hα lines was in the range 15-50. The purpose of the search was to look for the characteristic variability signatures of different kinematical models of the broad emission-line region. We considered the centering and guiding errors which can result in differences between spectra. We found variations in the broad Balmer line difference profiles on time scale of hour with the level of significance of 3.6 σ to 5.0 σ. Variations take the form of narrow, small bumps located at the blue and red sides or only at the blue side of the lines. In the intermediate level of broad line flux, the Hβ and Hα profiles show fine structure. Detected profile changes occurred at the same radial velocity shifts as the details in the fine structure. The variability is at least 2 orders of magnitude more rapid than any observed for broad Balmer line profiles in AGNs that we are aware of in the literature. Discovered extremely rapid line-profile variability may be associated with reverberation effects. Two-sided profile changes may indicate the response of circularly rotating hydrogen clouds in the BLR to a light pulse

  16. The Relativistic Iron Line Profile in the Seyfert 1 Galaxy IC4329a

    NASA Technical Reports Server (NTRS)

    Done, C.; Madejski, G. M.; Zycki, P. T.

    2000-01-01

    We present simultaneous ASCA and RXTE data on the bright Seyfert 1 galaxy IC4329a. The iron line is significantly broadened, but not to the extent expected from an accretion disk which extends down to the last stable orbit around a black hole. We marginally detect a narrow line component, presumably from the molecular torus, but, even including this gives a line profile from the accretion disk which is significantly narrower that that seen in MCG-6-30-15, and is much more like that seen from the low/hard state galactic black hole candidates. This is consistent with the inner disk being truncated before the last stable orbit, forming a hot flow at small radii as in the ADAF models. However. we cannot rule out the presence of an inner disk which does not contribute to the reflected spectrum. either because of extreme ionisation suppressing the characteristic atomic features of the reflected spectrum or because the X-ray source is intrinsically anisotropic, so it does not illuminate the inner disk. The source was monitored by RXTE every 2 days for 2 months, and these snapshot spectra show that there is intrinsic spectral variability. The data are good enough to disentangle the power law from the reflected continuum and we see that the power law softens as the source brightens. The lack of a corresponding increase in the observed reflected spectrum implies that either the changes in disk inner radial extent/ionization structure are small, or that the variability is actually driven by changes in the seed photons which are decoupled from the hard X-ray mechanism.

  17. Determination of line profiles on nano-structured surfaces using EUV and x-ray scattering

    NASA Astrophysics Data System (ADS)

    Soltwisch, Victor; Wernecke, Jan; Haase, Anton; Probst, Jürgen; Schoengen, Max; Krumrey, Michael; Scholze, Frank; Pomplun, Jan; Burger, Sven

    2014-09-01

    Non-imaging techniques like X-ray scattering are supposed to play an important role in the further development of CD metrology for the semiconductor industry. Grazing Incidence Small Angle X-ray Scattering (GISAXS) provides directly assessable information on structure roughness and long-range periodic perturbations. The disadvantage of the method is the large footprint of the X-ray beam on the sample due to the extremely shallow angle of incidence. This can be overcome by using wavelengths in the extreme ultraviolet (EUV) spectral range, EUV small angle scattering (EUVSAS), which allows for much steeper angles of incidence but preserves the range of momentum transfer that can be observed. Generally, the potentially higher momentum transfer at shorter wavelengths is counterbalanced by decreasing diffraction efficiency. This results in a practical limit of about 10 nm pitch for which it is possible to observe at least the +/- 1st diffraction orders with reasonable efficiency. At the Physikalisch-Technische Bundesanstalt (PTB), the available photon energy range extends from 50 eV up to 10 keV at two adjacent beamlines. PTB commissioned a new versatile Ellipso-Scatterometer which is capable of measuring 6" square substrates in a clean, hydrocarbon-free environment with full flexibility regarding the direction of the incident light polarization. The reconstruction of line profiles using a geometrical model with six free parameters, based on a finite element method (FEM) Maxwell solver and a particle swarm based least-squares optimization yielded consistent results for EUV-SAS and GISAXS. In this contribution we present scatterometry data for line gratings and consistent reconstruction results of the line geometry for EUV-SAS and GISAXS.

  18. Non-Maxwellian Analysis of the Transition-region Line Profiles Observed by the Interface Region Imaging Spectrograph

    NASA Astrophysics Data System (ADS)

    Dudík, Jaroslav; Polito, Vanessa; Dzifčáková, Elena; Del Zanna, Giulio; Testa, Paola

    2017-06-01

    We investigate the nature of the spectral line profiles for transition-region (TR) ions observed with the Interface Region Imaging Spectrograph (IRIS). In this context, we analyzed an active-region observation performed by IRIS in its 1400 Å spectral window. The TR lines are found to exhibit significant wings in their spectral profiles, which can be well fitted with a non-Maxwellian κ distribution. The fit with a κ distribution can perform better than a double-Gaussian fit, especially for the strongest line, Si iv 1402.8 Å. Typical values of κ found are about 2, occurring in a majority of spatial pixels where the TR lines are symmetric, i.e., the fit can be performed. Furthermore, all five spectral lines studied (from Si iv, O iv, and S iv) appear to have the same full-width at half-maximum irrespective of whether the line is an allowed or an intercombination transition. A similar value of κ is obtained for the electron distribution by the fitting of the line intensities relative to Si iv 1402.8 Å, if photospheric abundances are assumed. The κ distributions, however, do not remove the presence of non-thermal broadening. Instead, they actually increase the non-thermal width. This is because, for κ distributions, TR ions are formed at lower temperatures. The large observed non-thermal width lowers the opacity of the Si iv line sufficiently enough for this line to become optically thin.

  19. Molecular Profiling of Breast Cancer Cell Lines Defines Relevant Tumor Models and Provides a Resource for Cancer Gene Discovery

    PubMed Central

    Bocanegra, Melanie; Choi, Yoon-La; Girard, Luc; Gandhi, Jeet; Kwei, Kevin A.; Hernandez-Boussard, Tina; Wang, Pei; Gazdar, Adi F.; Minna, John D.; Pollack, Jonathan R.

    2009-01-01

    Background Breast cancer cell lines have been used widely to investigate breast cancer pathobiology and new therapies. Breast cancer is a molecularly heterogeneous disease, and it is important to understand how well and which cell lines best model that diversity. In particular, microarray studies have identified molecular subtypes–luminal A, luminal B, ERBB2-associated, basal-like and normal-like–with characteristic gene-expression patterns and underlying DNA copy number alterations (CNAs). Here, we studied a collection of breast cancer cell lines to catalog molecular profiles and to assess their relation to breast cancer subtypes. Methods Whole-genome DNA microarrays were used to profile gene expression and CNAs in a collection of 52 widely-used breast cancer cell lines, and comparisons were made to existing profiles of primary breast tumors. Hierarchical clustering was used to identify gene-expression subtypes, and Gene Set Enrichment Analysis (GSEA) to discover biological features of those subtypes. Genomic and transcriptional profiles were integrated to discover within high-amplitude CNAs candidate cancer genes with coordinately altered gene copy number and expression. Findings Transcriptional profiling of breast cancer cell lines identified one luminal and two basal-like (A and B) subtypes. Luminal lines displayed an estrogen receptor (ER) signature and resembled luminal-A/B tumors, basal-A lines were associated with ETS-pathway and BRCA1 signatures and resembled basal-like tumors, and basal-B lines displayed mesenchymal and stem/progenitor-cell characteristics. Compared to tumors, cell lines exhibited similar patterns of CNA, but an overall higher complexity of CNA (genetically simple luminal-A tumors were not represented), and only partial conservation of subtype-specific CNAs. We identified 80 high-level DNA amplifications and 13 multi-copy deletions, and the resident genes with concomitantly altered gene-expression, highlighting known and novel

  20. Modelling supernova line profile asymmetries to determine ejecta dust masses: SN 1987A from days 714 to 3604

    NASA Astrophysics Data System (ADS)

    Bevan, Antonia; Barlow, M. J.

    2016-02-01

    The late-time optical and near-IR line profiles of many core-collapse supernovae exhibit a red-blue asymmetry as a result of greater extinction by internal dust of radiation emitted from the receding parts of the supernova ejecta. We present here a new code, DAMOCLES, that models the effects of dust on the line profiles of core-collapse supernovae in order to determine newly formed dust masses. We find that late-time dust-affected line profiles may exhibit an extended red scattering wing (as noted by Lucy et al. 1989) and that they need not be flux-biased towards the blue, although the profile peak will always be blueshifted. We have collated optical spectra of SN 1987A from a variety of archival sources and have modelled the Hα line from days 714 to 3604 and the [O I] 6300,6363 Å doublet between days 714 and 1478. Our line profile fits rule out day 714 dust masses >3 × 10-3 M⊙ for all grain types apart from pure magnesium silicates, for which no more than 0.07 M⊙ can be accommodated. Large grain radii ( ≥ 0.6 μm) are generally required to fit the line profiles even at the earlier epochs. We find that a large dust mass (≥0.1 M⊙) had formed by day 3604 and infer that the majority of the present dust mass must have formed after this epoch. Our findings agree with recent estimates from spectral energy distribution fits for the dust mass evolution of SN 1987A and support the inference that the majority of SN 1987A's dust formed many years after the initial explosion.

  1. The morphologies of breast cancer cell lines in three-dimensionalassays correlate with their profiles of gene expression

    SciTech Connect

    Kenny, Paraic A.; Lee, Genee Y.; Myers, Connie A.; Neve, RichardM.; Semeiks, Jeremy R.; Spellman, Paul T.; Lorenz, Katrin; Lee, Eva H.; Barcellos-Hoff, Mary Helen; Petersen, Ole W.; Gray, Joe W.; Bissell, MinaJ.

    2007-01-31

    3D cell cultures are rapidly becoming the method of choice for the physiologically relevant modeling of many aspects of non-malignant and malignant cell behavior ex vivo. Nevertheless, only a limited number of distinct cell types have been evaluated in this assay to date. Here we report the first large scale comparison of the transcriptional profiles and 3D cell culture phenotypes of a substantial panel of human breast cancer cell lines. Each cell line adopts a colony morphology of one of four main classes in 3D culture. These morphologies reflect, at least in part, the underlying gene expression profile and protein expression patterns of the cell lines, and distinct morphologies were also associated with tumor cell invasiveness and with cell lines originating from metastases. We further demonstrate that consistent differences in genes encoding signal transduction proteins emerge when even tumor cells are cultured in 3D microenvironments.

  2. Caustics and Caustic-Diffraction in Laser Shadowgraphy of a Sessile Drop and Identification of Profile Near Contact Line

    NASA Technical Reports Server (NTRS)

    Zhang, Neng-Li; Chao, David F.

    2003-01-01

    This paper presents an optical method based on the caustics and caustic-difraction in laser shadowgaphy of a sessile drop to identify and estimate the drop profile near the contact line. A parallel laser beam passes through a liquid sessile drop placed on a transparent substrate to produce a shadowgraphic image of the drop on the screen far from the substrate. Along the inflection line of the drop the Gaussian curvature of the wavefront deformed by the drop vanishes, and therefore the inflection line gives caustics in the far field of the wave, which can be seen on the screen. The neighboring light rays at both sides of the inflection line interfere with each other to form interference fringes at the inner side of the caustics. According to the pattern of the caustics, the drop-profile shape can be identified and estimated.

  3. Diagnostic Power of Broad Emission Line Profiles in Searches for Binary Supermassive Black Holes: Comparison of Models with Observations

    NASA Astrophysics Data System (ADS)

    Nguyen, Khai; Bogdanovic, Tamara; Eracleous, Michael; Runnoe, Jessie C.; Sigurdsson, Steinn

    2017-01-01

    Motivated by observational searches for sub-parsec supermassive black hole binaries (SBHBs) we develop a semi-analytic model to describe the spectral emission line signatures of these systems. We are particularly interested in modeling the profiles of the broad emission lines, which have been used as a tool to search for SBHBs. The goal of this work is to test one of the leading models of binary accretion flows in the literature: SBHB in a circumbinary disk. In this context, we model SBHB accretion flows as a set of three accretion disks: two mini-disks that are gravitationally bound to the individual black holes and a circumbinary disk that forms a common envelope about a gravitationally bound binary. Our first generation model shows that emission line profiles tend to have different statistical properties depending on the semi-major axis, mass ratio, eccentricity of the binary, and the alignment of the triple-disk system, and can in principle be used to constrain the statistical distribution of these parameters. We present the results of a second generation model, which improves upon the treatment of radiative transfer by taking into account the effect of line-driven winds on the properties of the model emission line profiles. This improvement allows a preliminary comparison of the model profiles with the observed SBHB candidates and AGN population in general.

  4. Physiological Basis and Transcriptional Profiling of Three Salt-Tolerant Mutant Lines of Rice

    PubMed Central

    Domingo, Concha; Lalanne, Eric; Catalá, María M.; Pla, Eva; Reig-Valiente, Juan L.; Talón, Manuel

    2016-01-01

    Salinity is a complex trait that affects growth and productivity in many crops, including rice. Mutation induction, a useful tool to generate salt tolerant plants, enables the analysis of plants with similar genetic background, facilitating the understanding of the salt tolerance mechanisms. In this work, we generated three salt tolerant mutant lines by irradiation of a salt-sensitive cultivar plants and screened M2 plants at seedling stage in the presence of high salinity. These three lines, SaT20, SaS62, and SaT58, showed different responses to salinity, but exhibited similar phenotype to wild type plants, except SaT20 that displayed shorter height when grown in the absence of salt. Under salt conditions, all three mutants and the parental line showed similar reduction in yield, although relevant differences in other physiological parameters, such as Na+ accumulation in healthy leaves of SaT20, were registered. Microarray analyses of gene expression profiles in roots revealed the occurrence of common and specific responses in the mutants. The three mutants showed up-regulation of responsive genes, the activation of oxido-reduction process and the inhibition of ion transport. The participation of jasmonate in the plant response to salt was evident by down-regulation of a gene coding for a jasmonate O-methyltransferase. Genes dealing with lipid transport and metabolism were, in general, up-regulated except in SaS62, that also exhibited down-regulation of genes involved in ion transport and Ca2+ signal transduction. The two most tolerant varieties, SaS62 and SaT20, displayed lower levels of transcripts involved in K+ uptake. The physiological study and the description of the expression analysis evidenced that the three lines showed different responses to salt: SaT20 showed a high Na+ content in leaves, SaS62 presented an inhibition of lipid metabolism and ion transport and SaT58 differs in both features in the response to salinity. The analysis of these salt

  5. Seasonal Variations in the CO Line Profile and the Retrieved Thermal/Pressure Structures in the Atmosphere of Mars

    NASA Astrophysics Data System (ADS)

    Khayat, Alain; Villanueva, G. L.; Mumma, M. J.; Riesen, T. E.; Tokunaga, A. T.

    2013-10-01

    We report retrievals of temperature vertical profiles up to 100 km over Tharsis and Syrtis regions on Mars obtained by inverting the strong rotational (3-2) line of carbon monoxide (CO) at 346 GHz. Observations of CO were made from mid Northern Spring to early Northern Summer on Mars (Ls= 36°-108°, 23 Nov, 2011 - 13 May, 2012) using the Caltech Submillimeter Observatory's (CSO) high-resolution heterodyne receiver (Barney) on top of Mauna Kea, Hawai'i. The temperature profiles were derived using our radiative transfer model that considers the latest spectroscopic constants for CO collisionally broadened by CO2. We observe notable changes of the line profile for different dates, which are directly related to seasonal variations in the thermal/pressure structure of the atmosphere. The seasonal variability of the martian CO line profile, the extracted temperature profiles, and comparisons with modeled profiles from the Mars Climate Database (Lewis et al, 1999) will be presented. We gratefully acknowledge support from the NASA Planetary Astronomy Program , NASA Astrobiology Institute, Planetary Atmospheres programs. This material is based upon work at the Caltech Submillimeter Observatory, which is operated by the California Institute of Technology under cooperative agreement with the National Science Foundation, grant number AST-0838261.

  6. TNF-alpha modulates the differentiation induced by butyrate in the HT-29 human colon adenocarcinoma cell line.

    PubMed

    Kovaríková, M; Pacherník, J; Hofmanová, J; Zadák, Z; Kozubík, A

    2000-09-01

    The aim of this study was to determine whether and how tumour necrosis factor alpha (TNF-alpha) modulates butyrate effects. After the treatment of human colon adenocarcinoma HT-29 cells with sodium butyrate (NaBt), TNF-alpha or with their combinations we detected cell cycle (flow cytometry), cell proliferation (amidoblack and MTT assays), the amount of dead (floating) and apoptotic cells (flow cytometry and fluorescence microscopy), and the level of differentiation by alkaline phosphatase (ALP) activity (spectrophotometry), relative F-actin content (confocal laser scanning microscopy analysis) and E-cadherin expression (Western blot analysis). Both TNF-alpha and NaBt decreased cell growth in a dose-dependent manner. After combined treatment of the cells with both agents used, either none or additive effects were observed as compared with NaBt treatment alone. The level of dead and apoptotic cells was dose-dependently increased after this combined treatment. In contrast, TNF-alpha suppressed ALP activity and F-actin accumulation induced by NaBt. The results suggest that TNF-alpha does not influence significantly the antiproliferative effects of NaBt but, contrary to its potentiation of apoptosis, it markedly reduces NaBt-induced differentiation of HT-29 colon adenocarcinoma cells.

  7. Construction of a lipopolysaccharide reporter cell line and its use in identifying mutants defective in endotoxin, but not TNF-alpha, signal transduction.

    PubMed

    Delude, R L; Yoshimura, A; Ingalls, R R; Golenbock, D T

    1998-09-15

    Gram-negative bacterial LPS is a potent activator of inflammatory responses. The binding of LPS to CD14 initiates signal transduction; however, the molecular processes immediately following this event remain unclear. We engineered an LPS-inducible fibroblast reporter cell line to facilitate the use of molecular genetic techniques to study the LPS signaling pathway. A plasmid containing the human Tac Ag cDNA under transcriptional control of the human E selectin promoter was cotransfected into Chinese hamster ovary (CHO)-K1 cells together with a CD14 expression plasmid. A cell line was obtained, 3E10, which upregulated expression of Tac following stimulation with LPS. Pools of mutagenized cells were exposed to LPS and then labeled with anti-Tac mAb. Cells that failed to up-regulate Tac expression were enriched by flow cytometry. Thirty clonal mutant cell lines were identified that continued to express CD14 and bind LPS, but failed to express Tac or translocate nuclear factor-kappaB (NF-kappaB) following LPS exposure. TNF-alpha-treated mutant cells continued to express Tac and translocate NF-kappaB. An analysis of LPS-induced NF-kappaB activity in heterokaryons derived from polyethylene glycol-fused cell lines indicated that recessive mutations in genes encoding components of the LPS signaling pathway accounted for the signaling defects. To date, two complementation groups have been identified from 11 cell lines analyzed. These data demonstrate that the TNF-alpha signaling pathway diverges from the LPS pathway early in the signal-transduction cascade despite similarities in LPS- and TNF-alpha-induced responses. Identification of the genes affected in these mutant reporter cells should identify heretofore-elusive components of the LPS signaling cascade.

  8. Profiling mitochondrial proteins in radiation-induced genome-unstable cell lines with persistent oxidative stress by mass spectrometry

    SciTech Connect

    Miller, John H.; Jin, Shuangshuang; Morgan, William F.; Yang, Austin; Wan, Yunhu; Aypar, Umut; Peters, Jonathan S.; Springer, David L.

    2008-06-01

    Radiation-induced genome instability (RIGI) is a response to radiation exposure in which the progeny of surviving cells exhibit increased frequency of chromosomal changes many generations after the initial insult. Persistently elevated oxidative stress accompanying RIGI and the ability of free-radical scavengers, given before irradiation, to reduce the incidence of instability suggest that radiation induced alterations to mitochondrial function likely play a role in RIGI. To further elucidate this mechanism, we performed high-throughput quantitative mass spectrometry on samples enriched in mitochondrial proteins from three chromosomally-unstable GM10115 Chinese-hamster-ovary cell lines and their stable parental cell line. Out of several hundred identified proteins, sufficient data were collected on 74 mitochondrial proteins to test for statistically significant differences in their abundance between unstable and stable cell lines. Each of the unstable cell lines showed a distinct profile of statistically-significant differential abundant mitochondrial proteins. The LS-12 cell line was characterized by 8 downregulated proteins, whereas the CS-9 cell line exhibited 5 distinct up-regulated proteins. The unstable 115 cell line had two down-regulated proteins, one of which was also downregulated in LS-12, and one up-regulated protein relative to stable parental cells. The mitochondrial protein profiles for LS-12 and C-9 provide further evidence that mitochondrial dysfunction is involved in the genome instability of these cell lines.

  9. Profiling the glycoforms of the intact alpha subunit of recombinant human chorionic gonadotropin by high-resolution capillary electrophoresis-mass spectrometry.

    PubMed

    Thakur, Dipak; Rejtar, Tomas; Karger, Barry L; Washburn, Nathaniel J; Bosques, Carlos J; Gunay, Nur S; Shriver, Zachary; Venkataraman, Ganesh

    2009-11-01

    With the rapid growth of complex heterogeneous biological molecules, effective techniques that are capable of rapid characterization of biologics are essential to ensure the desired product characteristics. To address this need, we have developed a method for analysis of intact glycoproteins based on high-resolution capillary electrophoretic separation coupled to an LTQ-FT mass spectrometer. We evaluated the performance of this method on the alpha subunit of mouse cell line-derived recombinant human chorionic gonadotrophin (r-alpha hCG), a protein that is glycosylated at two sites and is part of the clinically relevant gonadotrophin family. Analysis of r-alpha hCG, using capillary electrophoresis (CE) with a separation time under 20 min, resulted in the identification of over 60 different glycoforms with up to nine sialic acids. High-resolution CE-Fourier transform mass spectrometry (FT-MS) allowed separation and analysis of not only intact glycoforms with different numbers of sialic acids but also intact glycoforms that differed by the number and extent of neutral monosaccharides. The high mass resolution of the FT-MS enabled a limited mass range to be targeted for the examination of the protein glycoforms, simplifying the analysis without sacrificing accuracy. In addition, the limited mass range resulted in a fast scan speed that enhanced the reproducibility of the relative quantitation of individual glycoforms. The intact glycoprotein analysis was complemented with the analysis of the tryptic glycopeptides and glycans of r-alpha hCG to enable the assignment of glycan structures to individual sites, resulting in a detailed characterization of the protein. Samples of r-alpha hCG obtained from a CHO cell line were also analyzed and briefly shown to be significantly different from the murine cell line product. Taken together, the results suggest that the CE coupled to high-resolution FT-MS can be one of the effective tools for in-process monitoring as well as for

  10. Gene Expression Profiles Deciphering Leaf Senescence Variation between Early- and Late-Senescence Cotton Lines

    PubMed Central

    Kong, Xiangqiang; Luo, Zhen; Dong, Hezhong; Eneji, A. Egrinya; Li, Weijiang; Lu, Hequan

    2013-01-01

    Leaf senescence varies greatly among genotypes of cotton (Gossypium hirsutium L), possibly due to the different expression of senescence-related genes. To determine genes involved in leaf senescence, we performed genome-wide transcriptional profiling of the main-stem leaves of an early- (K1) and a late-senescence (K2) cotton line at 110 day after planting (DAP) using the Solexa technology. The profiling analysis indicated that 1132 genes were up-regulated and 455 genes down-regulated in K1 compared with K2 at 110 DAP. The Solexa data were highly consistent with, and thus were validated by those from real-time quantitative PCR (RT-PCR). Most of the genes related to photosynthesis, anabolism of carbohydrates and other biomolecules were down-regulated, but those for catabolism of proteins, nucleic acids, lipids and nutrient recycling were mostly up-regulated in K1 compared with K2. Fifty-one differently expressed hormone-related genes were identified, of which 5 ethylene, 3 brassinosteroid (BR), 5 JA, 18 auxin, 8 GA and 1 ABA related genes were up-regulated in K1 compared with K2, indicating that these hormone-related genes might play crucial roles in early senescence of K1 leaves. Many differently expressed transcription factor (TF) genes were identified and 11 NAC and 8 WRKY TF genes were up-regulated in K1 compared with K2, suggesting that TF genes, especially NAC and WRKY genes were involved in early senescence of K1 leaves. Genotypic variation in leaf senescence was attributed to differently expressed genes, particularly hormone-related and TF genes. PMID:23922821

  11. GENERATION OF TWO STABLE CELL LINES THAT EXPRESS HER-ALPHA OR HER-ALPHA AND -BETA AND FIREFLY LUCIFERASE GENES FOR ENDOCRINE SCREENING

    EPA Science Inventory

    Generation of Two Stable Cell Lines that Express hERa or
    hERa and b and Firefly Luciferase Genes for Endocrine Screening

    K.L. Bobseine*1, W.R. Kelce2, P.C. Hartig*1, and L.E. Gray, Jr.1

    1USEPA, NHEERL, Reproductive Toxicology Division, RTP, NC, 2Searle, Reprod...

  12. GENERATION OF TWO STABLE CELL LINES THAT EXPRESS HER-ALPHA OR HER-ALPHA AND -BETA AND FIREFLY LUCIFERASE GENES FOR ENDOCRINE SCREENING

    EPA Science Inventory

    Generation of Two Stable Cell Lines that Express hERa or
    hERa and b and Firefly Luciferase Genes for Endocrine Screening

    K.L. Bobseine*1, W.R. Kelce2, P.C. Hartig*1, and L.E. Gray, Jr.1

    1USEPA, NHEERL, Reproductive Toxicology Division, RTP, NC, 2Searle, Reprod...

  13. Measurements of Spatial Line Emission Profiles in the Main Scrape-Off Layer of the DIII-D Tokamak

    SciTech Connect

    Groth, M; Ellis, R; Brooks, N; Fenstermacher, M; Lasnier, C; Meyer, W; Moller, J

    2009-06-05

    A video camera system is described that measures the spatial distribution of visible line emission emitted from the main scrape-off layer (SOL) of plasmas in the DIII-D tokamak. A wide-angle lens installed on an equatorial port and an in-vessel mirror which intercepts part of the lens view provide simultaneous tangential views of the SOL on the low-field and high-field sides of the plasma's equatorial plane. Tomographic reconstruction techniques are used to calculate the 2-D poloidal profiles from the raw data, and 1-D poloidal profiles simulating chordal views of other optical diagnostics from the 2-D profiles. The 2-D profiles can be compared with SOL plasma simulations; the 1-D profiles with measurements from spectroscopic diagnostics. Sample results are presented which elucidate carbon transport in plasmas with toroidally uniform injection of methane and argon transport in disruption mitigation experiments with massive gas jet injection.

  14. Authentication of newly established human esophageal squamous cell carcinoma cell line (YM-1) using short tandem repeat (STR) profiling method.

    PubMed

    Ayyoob, Khosravi; Masoud, Khoshnia; Vahideh, Kazeminejad; Jahanbakhsh, Asadi

    2016-03-01

    Cross-contamination during or early after establishment of a new cell line could result in the worldwide spread of a misidentified cell line. Therefore, newly established cell lines need to be authenticated by a reference standard method. This study was conducted to investigate the authenticity of a newly established epithelial cell line of human esophageal squamous cell carcinoma (ESCC) called YM-1 using short tandem repeat (STR) DNA profiling method. Primary human ESCC epithelial cells were cultured from the fresh tumor tissue of an adult female patient. Growth characteristics and epithelial originality of YM-1 cells were studied. Genomic DNA was isolated from YM-1 cells harvested at passage 22 and ESCC donor tumor sample on two different days to prevent probable DNA contamination. STR profiling was performed using AmpFℓSTR® Identifiler® Plus PCR Amplification Kit. To address whether YM-1 cells undergo genetic alteration as the passage number increases, STR profiling was performed again on harvested cells at passage 51. YM-1 cells grew as a monolayer with a population doubling time of 40.66 h. Epithelial originality of YM-1 cells was confirmed using ICC/IF staining of cytokeratins AE1/AE3. The STR profile of the ESCC donor tumor sample was the same with YM-1 cells at passage 22. However, STR profile of the donor tumor sample showed an off-ladder (OL) allele in their D7S820 locus. Also, re-profiling of YM-1 cells at passage 51 showed a loss of heterozygosity (LOH) at D18S51 locus. This suggests that long-term culture of cell lines may alter their DNA profile. Comparison of the DNA fingerprinting results in DSMZ, and ATCC STR profiling databases confirmed unique identity of YM-1 cell line. This study provides an easy, fast, and reliable procedure for authentication of newly established cell lines, which helps in preventing the spread of misidentified cells and improving the reproducibility and validity of experiments, consequently.

  15. Dips in spectral line profiles and their applications in plasma physics and atomic physics

    NASA Astrophysics Data System (ADS)

    Dalimier, E.; Oks, E.; Renner, O.

    2017-03-01

    We review studies of two kinds of dips in spectral line profiles emitted by plasmas - the dips that have been predicted theoretically and observed experimentally: Langmuir-wave-caused dips (L-dips) and charge-exchange-caused dips (X-dips). There is a principal difference with respect to positions of L-dips and X-dips relative to the unperturbed wavelength of a spectral line: positions of L-dips scale with the electron density Ne roughly as Ne1/2, while positions of X-dips are almost independent of Ne (the dependence is much weaker than for L-dips). L-dips and X-dips phenomena are important both fundamentally and practically. The fundamental importance is due to a rich physics behind each of these phenomena. As for important practical applications, they are as follows. Observations of L-dips constitute a very accurate method to measure the electron density in plasmas - the method that does not require the knowledge of the electron temperature. L-dips also allow measuring the amplitude of the electric field of Langmuir waves - the only one spectroscopic method available for this purpose. Observations of X-dips provide an opportunity to determine rate coefficient of charge exchange between multi-charged ions. This is an important reference data virtually inaccessible by other experimental methods. The rate coefficients of charge exchange are important for magnetic fusion in Tokamaks, for population inversion in the soft x-ray and VUV ranges, for ion storage devices, as well as for astrophysics (e.g., for the solar plasma and for determining the physical state of planetary nebulae).

  16. Profiling of differential expression of messenger RNA in normal, benign, and metastatic prostate cell lines.

    PubMed

    Chakrabarti, Ratna; Robles, Liza D; Gibson, Jane; Muroski, Megan

    2002-12-01

    To understand the phenotypic changes associated with prostate cancer development and metastasis, we investigated differential gene expression in primary and established prostate cell lines used as models. We have used a differential display of messenger RNA (DDRT-PCR) technique using 168 primer combinations and total RNA from BPH-1, LNCaP, and PC3 cells to identify filter-based cDNA microarrays containing 18,376 nonredundant clones of genes and expressed sequence tags (EST) using mRNA from PrEC and MDAPCa2a cells to identify genes that are differentially expressed in normal, benign, and cancerous prostate cell lines. Twenty-five cDNA with a significant difference in expression of 76 candidate cDNA, as identified by DDRT-PCR and confirmed by slot-blot analysis, were selected for sequence analysis. Of these, 14 cDNA were further confirmed by Northern blot analysis. Analysis of the cDNA microarray data showed that a variety of genes/EST were up- or down-regulated in the metastatic prostate tumor cells and a majority of these genes encode cytoskeletal proteins and proteins with regulatory function. Expression profile of two EST was confirmed by reverse transcription polymerase chain reaction. We also have identified a number of genes exhibiting differential expression in prostate cancer cells, which were not known earlier to be involved in prostate cancer. This report provides a comparative analysis of differential gene expression between normal prostatic epithelial cells and prostate cancer cells, and a foundation to facilitate in-depth studies on the mechanism of prostate cancer development and metastasis.

  17. In vitro study of alpha 2-adrenoceptor turnover and metabolism using the adenocarcinoma cell line HT29

    SciTech Connect

    Paris, H.; Taouis, M.; Galitzky, J.

    1987-11-01

    The biosynthesis rate of the receptor was studied in postconfluent HT29 cells, when its density expressed as fmol/mg of cell membrane protein is constant, by following the recovery of the receptor binding capacity after blockade with the non-reversible alpha-adrenergic antagonist benextramine. Study of the inhibition of (/sup 3/H)yohimbine and (/sup 3/H)UK-14,304 binding showed that benextramine was a more potent antagonist at alpha 2-adrenoceptor than phenoxybenzamine. The incubation of intact HT29 cells for 30 min in the presence of 10(-5) M benextramine irreversibly blocked more than 95% of the alpha 2-adrenoceptors and totally suppressed the inhibitory effect of UK-14,304 on cyclic AMP production. The blockade appeared specific, since benextramine effects were prevented by alpha 2-adrenergic agents. Moreover, neither vasoactive intestinal polypeptide responsiveness nor other tested aspects of the regulation of the adenylate cyclase was altered by the treatment. Study of the time course of receptor recovery after irreversible blockade indicated that alpha 2-adrenoceptors reappeared in the cells with a monoexponential kinetic. The linearization of the repopulation curve obtained with the labeled antagonist (/sup 3/H)yohimbine allowed the determination of the rate constant for receptor degradation (k = 0.0268 +/- 0.0025 hr-1) and the rate of receptor synthesis (6.91 +/- 0.64 fmol/mg of cell membrane protein/hr) corresponding to the synthesis of about 500 receptors/cell/hr. The alpha 2-adrenoceptor half-life was 26 +/- 3 hr. Measurement of the biological effects associated to the alpha-adrenoceptor stimulation during the course of receptor recovery indicated a relationship between the number of cell receptors and the percentage of inhibition of the cyclic AMP accumulation induced by forskolin.

  18. A comparison of lyman alpha and HeI lambda 10830 line structure and variations in early-type star atmospheres

    NASA Technical Reports Server (NTRS)

    Meisel, D. D.

    1977-01-01

    Fabry-Perot interferometric profiles for fifty of the early-type stars including supergiants, eclipsing binaries, Bp and Ap stars, Be and shell stars, and variable stars have been obtained. Results for beta Persei (Algol) just before primary and secondary eclipses show strong emission profiles lasting about 0.1 phase. An absorption line was seen during secondary eclipse. Bright supergiant stars (O9-A2) show time-variable, complicated absorption/emission profiles similar to those obtained for the Be/shell stars.

  19. Radiosensitivity of Prostate Cancer Cell Lines for Irradiation from Beta Particle-emitting Radionuclide ¹⁷⁷Lu Compared to Alpha Particles and Gamma Rays.

    PubMed

    Elgqvist, Jörgen; Timmermand, Oskar Vilhelmsson; Larsson, Erik; Strand, Sven-Erik

    2016-01-01

    The purpose of the present study was to investigate the radiosensitivity of the prostate cancer cell lines LNCaP, DU145, and PC3 when irradiated with beta particles emitted from (177)Lu, and to compare the effect with irradiation using alpha particles or gamma rays. Cells were irradiated with beta particles emitted from (177)Lu, alpha particles from (241)Am, or gamma rays from (137)Cs. A non-specific polyclonal antibody was labeled with (177)Lu and used to irradiate cells in suspension with beta particles. A previously described in-house developed alpha-particle irradiator based on a (241)Am source was used to irradiate cells with alpha particles. External gamma-ray irradiation was achieved using a standard (137)Cs irradiator. Cells were irradiated to absorbed doses equal to 0, 0.5, 1, 2, 4, 6, 8, or 10 Gy. The absorbed doses were calculated as mean absorbed doses. For evaluation of cell survival, the tetrazolium-based WST-1 assay was used. After irradiation, WST-1 was added to the cell solutions, incubated, and then measured for level of absorbance at 450 nm, indicating the live and viable cells. LNCaP, DU145, and PC3 cell lines all had similar patterns of survival for the different radiation types. No significant difference in surviving fractions were observed between cells treated with beta-particle and gamma-ray irradiation, represented for example by the surviving fraction values (mean±SD) at 2, 6, and 10 Gy (SF2, SF6, and SF10) for DU145 after beta-particle irradiation: 0.700±0.090, 0.186±0.050 and 0.056±0.010, respectively. A strong radiosensitivity to alpha particles was observed, with SF2 values of 0.048±0.008, 0.018±0.006 and 0.015±0.005 for LNCaP, DU145, and PC3, respectively. The surviving fractions after irradiation using beta particles or gamma rays did not differ significantly at the absorbed dose levels and dose rates used. Irradiation using alpha particles led to a high level of cell killing. The results show that the beta-particle emitter

  20. SU-E-T-472: Characterization of the Very High Energy Electrons, ISO - 250 MeV (VHEE) Beam Generated by ALPHA-X Laser Wakefield Accelerator Beam Line for Utilization in Monte Carlo Simulation for Biomedical Experiment Planning.

    PubMed

    Moskvin, V; Subiel, A; Desrosiers, C; Wiggins, M; Maryanski, M; Mendonca, M; Boyd, M; Sorensen, A; Cipiccia, S; Issac, R; Welsh, G; Brunetti, E; Aniculaesei, C; Jaroszynski, D A

    2012-06-01

    Progress in the development of compact high-energy pulsed laser- plasma wakefield accelerators is opening up the potential for using Very High Energy Electron (VHEEs) beams in the range of 150 - 250 MeV for biomedical studies. Initial experiments using VHEE for this purpose have been carried out using the ALPHA-X laser-plasma wakefield accelerator beam line at the University of Strathclyde, Glasgow, UK. The purpose of this investigation is to use Monte Carlo simulations to plan experiments and compare with characterization of the interaction of the VHEE beam using a dosimeter. An experiment using the VHEE beam to irradiate a muscle-equivalent BANG polymer gel dosimeter has been carried out. Simulations have been used to prepare for the experiments. These were undertaken using the expected average energy for a pulse set and an energy spread approximated by Gaussian distribution. The model was implemented in FLUKA Monte Carlo code with follow up modeling using the Geant4 toolkit. The results have been compared with 1mm̂3 voxel laser CT based measurements of the dose deposited in the BANG dosimeter and with measurement of the induced radioactivity. The results of the measured dose from induced radioactivity have been compared with data from the FLUKA simulations. The beam model based on an average energy of particles in irradiation gives an acceptable estimate of the induced radioactivity and the dose deposited in the BANG dosimeter. Comparison with the dosimeter scanned profiles shows that the structure of the spectra of VHEE beams in the experiment and secondary scattered particles in the beam line should be accounted for in any model. Such model description of the VHEE beam for the ALPHA-X beam line has been developed. Monte Carlo simulations using the FLUKA code is an efficient way to plan a VHEE experiment and analyze data from measurements. © 2012 American Association of Physicists in Medicine.

  1. Lyman alpha radiation in external galaxies

    NASA Technical Reports Server (NTRS)

    Neufeld, David A.; Mckee, Christopher F.

    1990-01-01

    The Ly alpha line of atomic hydrogen is often a luminous component of the radiation emitted by distant galaxies. Except for those galaxies which have a substantial central source of non-stellar ionizing radiation, most of the Ly alpha radiation emitted by galaxies is generated within regions of the interstellar medium which are photoionized by starlight. Conversely, much of the energy radiated by photoionized regions is carried by the Ly alpha line. Only hot, massive stars are capable of ionizing hydrogen in the interstellar medium which surrounds them, and because such stars are necessarily short-lived, Ly alpha emission traces regions of active star formation. Researchers argue that the strength of the Ly alpha emission observed from external galaxies may be used to estimate quantitatively the dust content of the emitting region, while the Ly alpha line profile is sensitive to the presence of shock waves. Interstellar dust particles and shock waves are intimately associated with the process of star formation in two senses. First, both dust particles and shock waves owe their existence to stellar activity; second, they may both serve as agents which facilitate the formation of stars, shocks by triggering gravitational instabilities in the interstellar gas that they compress, and dust by shielding star-forming molecular clouds from the ionizing and dissociative effects of external UV radiation. By using Ly alpha observations as a probe of the dust content in diffuse gas at high redshift, we might hope to learn about the earliest epochs of star formation.

  2. IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies.

    PubMed

    Loher, Phillipe; Londin, Eric R; Rigoutsos, Isidore

    2014-09-30

    For many years it was believed that each mature microRNA (miRNA) existed as a single entity with fixed endpoints and a 'static' and unchangeable primary sequence. However, recent evidence suggests that mature miRNAs are more 'dynamic' and that each miRNA precursor arm gives rise to multiple isoforms, the isomiRs. Here we report on our identification of numerous and abundant isomiRs in the lymphoblastoid cell lines (LCLs) of 452 men and women from five different population groups. Unexpectedly, we find that these isomiRs exhibit an expression profile that is population-dependent and gender-dependent. This is important as it indicates that the LCLs of each gender/population combination have their own unique collection of mature miRNA transcripts. Moreover, each identified isomiR has its own characteristic abundance that remains consistent across biological replicates indicating that these are not degradation products. The primary sequences of identified isomiRs differ from the known miRBase miRNA either at their 5´-endpoint (leads to a different 'seed' sequence and suggests a different targetome), their 3´-endpoint, or both simultaneously. Our analysis of Argonaute PAR-CLIP data from LCLs supports the association of many of these newly identified isomiRs with the Argonaute silencing complex and thus their functional roles through participation in the RNA interference pathway.

  3. PROJECT VeSElkA: ANALYSIS OF BALMER LINE PROFILES OF SLOWLY ROTATING CHEMICALLY PECULIAR STARS

    SciTech Connect

    Khalack, V.; LeBlanc, F.

    2015-07-15

    We present results for the estimation of gravity, effective temperature, and radial velocity of poorly studied chemically peculiar stars recently observed with the spectropolarimeter Echelle SpectroPolarimetric Device for Observations of Stars at the Canada–France–Hawaii Telescope in the frame of the Vertical Stratification of Element Abundances project. The effective temperature and surface gravity values are determined for the very first time for four of the stars from our sample (HD 23878, HD 83373, HD 95608, and HD 164584). Grids of stellar atmosphere models with the corresponding fluxes have been calculated using version