Tree ring reconstructed rainfall over the southern Amazon Basin

NASA Astrophysics Data System (ADS)

Lopez, Lidio; Stahle, David; Villalba, Ricardo; Torbenson, Max; Feng, Song; Cook, Edward

2017-07-01

Moisture sensitive tree ring chronologies of Centrolobium microchaete have been developed from seasonally dry forests in the southern Amazon Basin and used to reconstruct wet season rainfall totals from 1799 to 2012, adding over 150 years of rainfall estimates to the short instrumental record for the region. The reconstruction is correlated with the same atmospheric variables that influence the instrumental measurements of wet season rainfall. Anticyclonic circulation over midlatitude South America promotes equatorward surges of cold and relatively dry extratropical air that converge with warm moist air to form deep convection and heavy rainfall over this sector of the southern Amazon Basin. Interesting droughts and pluvials are reconstructed during the preinstrumental nineteenth and early twentieth centuries, but the tree ring reconstruction suggests that the strong multidecadal variability in instrumental and reconstructed wet season rainfall after 1950 may have been unmatched since 1799.

Slow growth rates of Amazonian trees: Consequences for carbon cycling

PubMed Central

Vieira, Simone; Trumbore, Susan; Camargo, Plinio B.; Selhorst, Diogo; Chambers, Jeffrey Q.; Higuchi, Niro; Martinelli, Luiz Antonio

2005-01-01

Quantifying age structure and tree growth rate of Amazonian forests is essential for understanding their role in the carbon cycle. Here, we use radiocarbon dating and direct measurement of diameter increment to document unexpectedly slow growth rates for trees from three locations spanning the Brazilian Amazon basin. Central Amazon trees, averaging only ≈1mm/year diameter increment, grow half as fast as those from areas with more seasonal rainfall to the east and west. Slow growth rates mean that trees can attain great ages; across our sites we estimate 17-50% of trees with diameter >10 cm have ages exceeding 300 years. Whereas a few emergent trees that make up a large portion of the biomass grow faster, small trees that are more abundant grow slowly and attain ages of hundreds of years. The mean age of carbon in living trees (60-110 years) is within the range of or slightly longer than the mean residence time calculated from C inventory divided by annual C allocation to wood growth (40-100 years). Faster C turnover is observed in stands with overall higher rates of diameter increment and a larger fraction of the biomass in large, fast-growing trees. As a consequence, forests can recover biomass relatively quickly after disturbance, whereas recovering species composition may take many centuries. Carbon cycle models that apply a single turnover time for carbon in forest biomass do not account for variations in life strategy and therefore may overestimate the carbon sequestration potential of Amazon forests. PMID:16339903

Tree rings and rainfall in the equatorial Amazon

NASA Astrophysics Data System (ADS)

Granato-Souza, Daniela; Stahle, David W.; Barbosa, Ana Carolina; Feng, Song; Torbenson, Max C. A.; de Assis Pereira, Gabriel; Schöngart, Jochen; Barbosa, Joao Paulo; Griffin, Daniel

2018-05-01

The Amazon basin is a global center of hydroclimatic variability and biodiversity, but there are only eight instrumental rainfall stations with continuous records longer than 80 years in the entire basin, an area nearly the size of the coterminous US. The first long moisture-sensitive tree-ring chronology has been developed in the eastern equatorial Amazon of Brazil based on dendrochronological analysis of Cedrela cross sections cut during sustainable logging operations near the Rio Paru. The Rio Paru chronology dates from 1786 to 2016 and is significantly correlated with instrumental precipitation observations from 1939 to 2016. The strength and spatial scale of the precipitation signal vary during the instrumental period, but the Rio Paru chronology has been used to develop a preliminary reconstruction of February to November rainfall totals from 1786 to 2016. The reconstruction is related to SSTs in the Atlantic and especially the tropical Pacific, similar to the stronger pattern of association computed for the instrumental rainfall data from the eastern Amazon. The tree-ring data estimate extended drought and wet episodes in the mid- to late-nineteenth century, providing a valuable, long-term perspective on the moisture changes expected to emerge over the Amazon in the coming century due to deforestation and anthropogenic climate change.

Deforestation, fire susceptibility, and potential tree responses to fire in the eastern Amazon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Uhl, C.; Kauffman, J.B.

1990-04-01

In the state of Para, Brazil, in the eastern Amazon, the authors studied the potential for sustained fire events within four dominant vegetation cover types (undisturbed rain forest, selectively logged forest, second-growth forest, and open pasture), by measuring fuel availability, microclimate, and rates of fuel moisture loss. They also estimated the potential tree mortality that might result from a wide-scale Amazon forest fire by measuring the thermal properties of bark for all trees in a 5-ha stand of mature forest, followed by measurements of heat flux through bark during simulated fires. In pastures the average midday temperature was almost 10{degree}Cmore » greater and the average midday relative humidity was 30% lower than in primary forest. The most five-prone ecosystem was the open pasture followed by selectively logged forest, second growth forest, and undisturbed rain forest in which sustained combustion was not possible even after prolonged rainless periods. Even though the autogenic factors in primary forest of the eastern Amazon create a microclimate that virtually eliminates the probability of fire, they are currently a common event in disturbed areas of Amazonia. As many as 8 {times} 10{sup 6} ha burned in the Amazon Basin of Brazil in 1987 alone. In terms of current land-use patterns, altered microclimates, and fuel mass, there are also striking similarities between the eastern Amazon and East Kalimantan, Indonesia (the site of recent rain forest wildfires that burned 3.5 {times} 10{sup 6} ha).« less

Landscape-scale consequences of differential tree mortality from catastrophic wind disturbance in the Amazon.

PubMed

Rifai, Sami W; Urquiza Muñoz, José D; Negrón-Juárez, Robinson I; Ramírez Arévalo, Fredy R; Tello-Espinoza, Rodil; Vanderwel, Mark C; Lichstein, Jeremy W; Chambers, Jeffrey Q; Bohlman, Stephanie A

2016-10-01

Wind disturbance can create large forest blowdowns, which greatly reduces live biomass and adds uncertainty to the strength of the Amazon carbon sink. Observational studies from within the central Amazon have quantified blowdown size and estimated total mortality but have not determined which trees are most likely to die from a catastrophic wind disturbance. Also, the impact of spatial dependence upon tree mortality from wind disturbance has seldom been quantified, which is important because wind disturbance often kills clusters of trees due to large treefalls killing surrounding neighbors. We examine (1) the causes of differential mortality between adult trees from a 300-ha blowdown event in the Peruvian region of the northwestern Amazon, (2) how accounting for spatial dependence affects mortality predictions, and (3) how incorporating both differential mortality and spatial dependence affect the landscape level estimation of necromass produced from the blowdown. Standard regression and spatial regression models were used to estimate how stem diameter, wood density, elevation, and a satellite-derived disturbance metric influenced the probability of tree death from the blowdown event. The model parameters regarding tree characteristics, topography, and spatial autocorrelation of the field data were then used to determine the consequences of non-random mortality for landscape production of necromass through a simulation model. Tree mortality was highly non-random within the blowdown, where tree mortality rates were highest for trees that were large, had low wood density, and were located at high elevation. Of the differential mortality models, the non-spatial models overpredicted necromass, whereas the spatial model slightly underpredicted necromass. When parameterized from the same field data, the spatial regression model with differential mortality estimated only 7.5% more dead trees across the entire blowdown than the random mortality model, yet it estimated 51% greater necromass. We suggest that predictions of forest carbon loss from wind disturbance are sensitive to not only the underlying spatial dependence of observations, but also the biological differences between individuals that promote differential levels of mortality. © 2016 by the Ecological Society of America.

Tree-Ring Reconstruction of Wet Season Rainfall Totals in the Amazon

NASA Astrophysics Data System (ADS)

Stahle, D. W.; Lopez, L.; Granato-Souza, D.; Barbosa, A. C. M. C.; Torbenson, M.; Villalba, R.; Pereira, G. D. A.; Feng, S.; Schongart, J.; Cook, E. R.

2017-12-01

The Amazon Basin is a globally important center of deep atmospheric convection, energy balance, and biodiversity, but only a handful of weather stations in this vast Basin have recorded rainfall measurements for at least 50 years. The available rainfall and river level observations suggest that the hydrologic cycle in the Amazon may have become amplified in the last 40-years, with more extreme rainfall and streamflow seasonality, deeper droughts, and more severe flooding. These changes in the largest hydrological system on earth may be early evidence of the expected consequences of anthropogenic climate change and deforestation in the coming century. Placing these observed and simulated changes in the context of natural climate variability during the late Holocene is a significant challenge for high-resolution paleoclimatology. We have developed exactly dated and well-replicated annual tree-ring chronologies from two native Amazonian tree species (Cedrela sp and Centrolobium microchaete). These moisture sensitive chronologies have been used to compute two reconstructions of wet season rainfall totals, one in the southern Amazon based on Centrolobium and another in the eastern equatorial Amazon using Cedrela. Both reconstructions are over 200-years long and extend the available instrumental observations in each region by over 150-years. These reconstructions are well correlated with the same regional and large-scale climate dynamics that govern the inter-annual variability of the instrumental wet season rainfall totals. Increased multi-decadal variability is reconstructed after 1950 with the Centrolobium chronologies in the southern Amazon. The Cedrela reconstruction from the eastern Amazon exhibits changes in the spatial pattern of correlation with regional rainfall stations and the large-scale sea surface temperature field after 1990 that may be consistent with recent changes in the mean position of the Inter-Tropical Convergence Zone in March over the western Atlantic and South American sector.

Tropical forest carbon balance: effects of field- and satellite-based mortality regimes on the dynamics and the spatial structure of Central Amazon forest biomass

NASA Astrophysics Data System (ADS)

Di Vittorio, Alan V.; Negrón-Juárez, Robinson I.; Higuchi, Niro; Chambers, Jeffrey Q.

2014-03-01

Debate continues over the adequacy of existing field plots to sufficiently capture Amazon forest dynamics to estimate regional forest carbon balance. Tree mortality dynamics are particularly uncertain due to the difficulty of observing large, infrequent disturbances. A recent paper (Chambers et al 2013 Proc. Natl Acad. Sci. 110 3949-54) reported that Central Amazon plots missed 9-17% of tree mortality, and here we address ‘why’ by elucidating two distinct mortality components: (1) variation in annual landscape-scale average mortality and (2) the frequency distribution of the size of clustered mortality events. Using a stochastic-empirical tree growth model we show that a power law distribution of event size (based on merged plot and satellite data) is required to generate spatial clustering of mortality that is consistent with forest gap observations. We conclude that existing plots do not sufficiently capture losses because their placement, size, and longevity assume spatially random mortality, while mortality is actually distributed among differently sized events (clusters of dead trees) that determine the spatial structure of forest canopies.

Penicillium excelsum sp. nov from the Brazil Nut Tree Ecosystem in the Amazon Basin'.

PubMed

Taniwaki, Marta Hiromi; Pitt, John I; Iamanaka, Beatriz T; Massi, Fernanda P; Fungaro, Maria Helena P; Frisvad, Jens C

2015-01-01

A new Penicillium species, P. excelsum, is described here using morphological characters, extrolite and partial sequence data from the ITS, β-tubulin and calmodulin genes. It was isolated repeatedly using samples of nut shells and flowers from the brazil nut tree, Bertolletia excelsa, as well as bees and ants from the tree ecosystem in the Amazon rainforest. The species produces andrastin A, curvulic acid, penicillic acid and xanthoepocin, and has unique partial β-tubulin and calmodulin gene sequences. The holotype of P. excelsum is CCT 7772, while ITAL 7572 and IBT 31516 are cultures derived from the holotype.

Penicillium excelsum sp. nov from the Brazil Nut Tree Ecosystem in the Amazon Basin’

PubMed Central

Taniwaki, Marta Hiromi; Pitt, John I.; Iamanaka, Beatriz T.; Massi, Fernanda P.; Fungaro, Maria Helena P.; Frisvad, Jens C.

2015-01-01

A new Penicillium species, P. excelsum, is described here using morphological characters, extrolite and partial sequence data from the ITS, β-tubulin and calmodulin genes. It was isolated repeatedly using samples of nut shells and flowers from the brazil nut tree, Bertolletia excelsa, as well as bees and ants from the tree ecosystem in the Amazon rainforest. The species produces andrastin A, curvulic acid, penicillic acid and xanthoepocin, and has unique partial β-tubulin and calmodulin gene sequences. The holotype of P. excelsum is CCT 7772, while ITAL 7572 and IBT 31516 are cultures derived from the holotype. PMID:26717519

Abrupt Increases in Amazonian Tree Mortality Due to Drought-Fire Interactions

NASA Technical Reports Server (NTRS)

Brando, Paulo Monteiro; Balch, Jennifer K.; Nepstad, Daniel C.; Morton, Douglas C.; Putz, Francis E.; Coe, Michael T.; Silverio, Divino; Macedo, Marcia N.; Davidson, Eric A.; Nobrega, Caroline C.;

Abrupt increases in Amazonian tree mortality due to drought-fire interactions.

PubMed

Brando, Paulo Monteiro; Balch, Jennifer K; Nepstad, Daniel C; Morton, Douglas C; Putz, Francis E; Coe, Michael T; Silvério, Divino; Macedo, Marcia N; Davidson, Eric A; Nóbrega, Caroline C; Alencar, Ane; Soares-Filho, Britaldo S

2014-04-29

Interactions between climate and land-use change may drive widespread degradation of Amazonian forests. High-intensity fires associated with extreme weather events could accelerate this degradation by abruptly increasing tree mortality, but this process remains poorly understood. Here we present, to our knowledge, the first field-based evidence of a tipping point in Amazon forests due to altered fire regimes. Based on results of a large-scale, long-term experiment with annual and triennial burn regimes (B1yr and B3yr, respectively) in the Amazon, we found abrupt increases in fire-induced tree mortality (226 and 462%) during a severe drought event, when fuel loads and air temperatures were substantially higher and relative humidity was lower than long-term averages. This threshold mortality response had a cascading effect, causing sharp declines in canopy cover (23 and 31%) and aboveground live biomass (12 and 30%) and favoring widespread invasion by flammable grasses across the forest edge area (80 and 63%), where fires were most intense (e.g., 220 and 820 kW ⋅ m(-1)). During the droughts of 2007 and 2010, regional forest fires burned 12 and 5% of southeastern Amazon forests, respectively, compared with <1% in nondrought years. These results show that a few extreme drought events, coupled with forest fragmentation and anthropogenic ignition sources, are already causing widespread fire-induced tree mortality and forest degradation across southeastern Amazon forests. Future projections of vegetation responses to climate change across drier portions of the Amazon require more than simulation of global climate forcing alone and must also include interactions of extreme weather events, fire, and land-use change.

Abrupt increases in Amazonian tree mortality due to drought–fire interactions

PubMed Central

Brando, Paulo Monteiro; Balch, Jennifer K.; Nepstad, Daniel C.; Morton, Douglas C.; Putz, Francis E.; Coe, Michael T.; Silvério, Divino; Macedo, Marcia N.; Davidson, Eric A.; Nóbrega, Caroline C.; Alencar, Ane; Soares-Filho, Britaldo S.

2014-01-01

Interactions between climate and land-use change may drive widespread degradation of Amazonian forests. High-intensity fires associated with extreme weather events could accelerate this degradation by abruptly increasing tree mortality, but this process remains poorly understood. Here we present, to our knowledge, the first field-based evidence of a tipping point in Amazon forests due to altered fire regimes. Based on results of a large-scale, long-term experiment with annual and triennial burn regimes (B1yr and B3yr, respectively) in the Amazon, we found abrupt increases in fire-induced tree mortality (226 and 462%) during a severe drought event, when fuel loads and air temperatures were substantially higher and relative humidity was lower than long-term averages. This threshold mortality response had a cascading effect, causing sharp declines in canopy cover (23 and 31%) and aboveground live biomass (12 and 30%) and favoring widespread invasion by flammable grasses across the forest edge area (80 and 63%), where fires were most intense (e.g., 220 and 820 kW⋅m−1). During the droughts of 2007 and 2010, regional forest fires burned 12 and 5% of southeastern Amazon forests, respectively, compared with <1% in nondrought years. These results show that a few extreme drought events, coupled with forest fragmentation and anthropogenic ignition sources, are already causing widespread fire-induced tree mortality and forest degradation across southeastern Amazon forests. Future projections of vegetation responses to climate change across drier portions of the Amazon require more than simulation of global climate forcing alone and must also include interactions of extreme weather events, fire, and land-use change. PMID:24733937

Pau D'Arco

MedlinePlus

Pau d'arco is a tree that grows in the Amazon rainforest and other tropical regions of South and Central America. Pau d'arco wood is dense ... name "pau d'arco" is Portuguese for "bow tree," an appropriate term considering the tree's use by ...

Water stress detection in the Amazon using radar

NASA Astrophysics Data System (ADS)

van Emmerik, Tim; Steele-Dunne, Susan; Paget, Aaron; Oliveira, Rafael S.; Bittencourt, Paulo R. L.; Barros, Fernanda de V.; van de Giesen, Nick

2017-07-01

The Amazon rainforest plays an important role in the global water and carbon cycle, and though it is predicted to continue drying in the future, the effect of drought remains uncertain. Developments in remote sensing missions now facilitate large-scale observations. The RapidScat scatterometer (Ku band) mounted on the International Space Station observes the Earth in a non-Sun-synchronous orbit, which allows for studying changes in the diurnal cycle of radar backscatter over the Amazon. Diurnal cycles in backscatter are significantly affected by the state of the canopy, especially during periods of increased water stress. We use RapidScat backscatter time series and water deficit measurements from dendrometers in 20 trees during a 9 month period to relate variations in backscatter to increased tree water deficit. Morning radar bacskcatter dropped significantly with increased tree water deficit measured with dendrometers. This provides unique observational evidence that demonstrates the sensitivity of radar backscatter to vegetation water stress, highlighting the potential of drought detection and monitoring using radar.

An ecological risk assessment of nonnative boas and pythons as potentially invasive species in the United States.

PubMed

Reed, Robert N

2005-06-01

The growing international trade in live wildlife has the potential to result in continuing establishment of nonnative animal populations in the United States. Snakes may pose particularly high risks as potentially invasive species, as exemplified by the decimation of Guam's vertebrate fauna by the accidentally introduced brown tree snake. Herein, ecological and commercial predictors of the likelihood of establishment of invasive populations were used to model risk associated with legal commercial imports of 23 species of boas, pythons, and relatives into the United States during the period 1989-2000. Data on ecological variables were collected from multiple sources, while data on commercial variables were collated from import records maintained by the U.S. Fish and Wildlife Service. Results of the risk-assessment models indicate that species including boa constrictors (Boa constrictor), ball pythons (Python regius), and reticulated pythons (P. reticulatus) may pose particularly high risks as potentially invasive species. Recommendations for reducing risk of establishment of invasive populations of snakes and/or pathogens include temporary quarantine of imports to increase detection rates of nonnative pathogens, increasing research attention to reptile pathogens, reducing the risk that nonnative snakes will reach certain areas with high numbers of federally listed species (such as the Florida Keys), and attempting to better educate individuals purchasing reptiles.

Volatile isoprenoids as defense compounds during abiotic stress in tropical plants

NASA Astrophysics Data System (ADS)

Jardine, K.

2015-12-01

Emissions of volatile isoprenoids from tropical forests play central roles in atmospheric processes by fueling atmospheric chemistry resulting in modified aerosol and cloud lifecycles and their associated feedbacks with the terrestrial biosphere. However, the identities of tropical isoprenoids, their biological and environmental controls, and functions within plants and ecosystems remain highly uncertain. As part of the DOE ARM program's GoAmazon 2014/15 campaign, extensive field and laboratory observations of volatile isoprenoids are being conducted in the central Amazon. Here we report the results of our completed and ongoing activities at the ZF2 forest reserve in the central Amazon. Among the results of the research are the suprisingly high abundance of light-dependent volatile isoprenoid emissions across abundant tree genera in the Amazon in both primary and secondary forests, the discovery of highly reactive monoterpene emissions from Amazon trees, and evidence for the importance of volatile isoprenoids in protecting photosynthesis during oxidative stress under elevated temperatures including energy consumption and direct antioxidant functions and a tight connection betwen volatile isoprenoid emissions, photorespiration, and CO2 recycling within leaves. The results highlight the need to model allocation of carbon to isoprenoids during elevated temperature stress in the tropics.

Water Stress Impacts Tree-Atmosphere Interaction in the Amazon

NASA Astrophysics Data System (ADS)

van Emmerik, T. H. M.; Steele-Dunne, S. C.; Gentine, P.; Oliveira, R. S.; Van De Giesen, N.

2017-12-01

Land-atmosphere interactions depend on momentum exchange from the atmosphere to the canopy, which depends on the tree drag coefficient. It is known that the drag coefficient, and thus tree-atmosphere interaction, can vary strongly within a canopy. Yet, only few measurements are available to study the variation of tree-atmosphere interaction in time and space, and in response to vegetation water stress. Recent work [1] demonstrated how accelerometers can be used to study tree properties and responses. For this study, accelerometers were used to derive a measure of tree-atmosphere interaction for 19 individual trees of seven different species in the Brazilian Amazon. This study demonstrates that under field conditions, tree-atmosphere interaction can vary considerably in time and space. The five month measurement period included the transitioning from the wet to the dry season. We demonstrate that increased tree water deficit, measured with dendrometers, is related to observed changes in tree-atmosphere interaction, which is hypothesized to be caused by water stress induced changes in tree mass. References [1]. van Emmerik, T.; Steele-Dunne, S.; Hut, R.; Gentine, P.; Guerin, M.; Oliveira, R.S.; Wagner, J.; Selker, J.; van de Giesen, N. Measuring Tree Properties and Responses Using Low-Cost Accelerometers. Sensors 2017, 17, 1098.

Green Leaf Volatile Emissions during High Temperature and Drought Stress in a Central Amazon Rainforest

PubMed Central

Jardine, Kolby J.; Chambers, Jeffrey Q.; Holm, Jennifer; Jardine, Angela B.; Fontes, Clarissa G.; Zorzanelli, Raquel F.; Meyers, Kimberly T.; de Souza, Vinicius Fernadez; Garcia, Sabrina; Gimenez, Bruno O.; de O. Piva, Luani R.; Higuchi, Niro; Artaxo, Paulo; Martin, Scot; Manzi, Antônio O.

2015-01-01

Prolonged drought stress combined with high leaf temperatures can induce programmed leaf senescence involving lipid peroxidation, and the loss of net carbon assimilation during early stages of tree mortality. Periodic droughts are known to induce widespread tree mortality in the Amazon rainforest, but little is known about the role of lipid peroxidation during drought-induced leaf senescence. In this study, we present observations of green leaf volatile (GLV) emissions during membrane peroxidation processes associated with the combined effects of high leaf temperatures and drought-induced leaf senescence from individual detached leaves and a rainforest ecosystem in the central Amazon. Temperature-dependent leaf emissions of volatile terpenoids were observed during the morning, and together with transpiration and net photosynthesis, showed a post-midday depression. This post-midday depression was associated with a stimulation of C5 and C6 GLV emissions, which continued to increase throughout the late afternoon in a temperature-independent fashion. During the 2010 drought in the Amazon Basin, which resulted in widespread tree mortality, green leaf volatile emissions (C6 GLVs) were observed to build up within the forest canopy atmosphere, likely associated with high leaf temperatures and enhanced drought-induced leaf senescence processes. The results suggest that observations of GLVs in the tropical boundary layer could be used as a chemical sensor of reduced ecosystem productivity associated with drought stress. PMID:27135346

Green Leaf Volatile Emissions during High Temperature and Drought Stress in a Central Amazon Rainforest.

PubMed

Jardine, Kolby J; Chambers, Jeffrey Q; Holm, Jennifer; Jardine, Angela B; Fontes, Clarissa G; Zorzanelli, Raquel F; Meyers, Kimberly T; de Souza, Vinicius Fernadez; Garcia, Sabrina; Gimenez, Bruno O; Piva, Luani R de O; Higuchi, Niro; Artaxo, Paulo; Martin, Scot; Manzi, Antônio O

2015-09-15

Prolonged drought stress combined with high leaf temperatures can induce programmed leaf senescence involving lipid peroxidation, and the loss of net carbon assimilation during early stages of tree mortality. Periodic droughts are known to induce widespread tree mortality in the Amazon rainforest, but little is known about the role of lipid peroxidation during drought-induced leaf senescence. In this study, we present observations of green leaf volatile (GLV) emissions during membrane peroxidation processes associated with the combined effects of high leaf temperatures and drought-induced leaf senescence from individual detached leaves and a rainforest ecosystem in the central Amazon. Temperature-dependent leaf emissions of volatile terpenoids were observed during the morning, and together with transpiration and net photosynthesis, showed a post-midday depression. This post-midday depression was associated with a stimulation of C₅ and C₆ GLV emissions, which continued to increase throughout the late afternoon in a temperature-independent fashion. During the 2010 drought in the Amazon Basin, which resulted in widespread tree mortality, green leaf volatile emissions (C₆ GLVs) were observed to build up within the forest canopy atmosphere, likely associated with high leaf temperatures and enhanced drought-induced leaf senescence processes. The results suggest that observations of GLVs in the tropical boundary layer could be used as a chemical sensor of reduced ecosystem productivity associated with drought stress.

Drought impact on forest carbon dynamics and fluxes in Amazonia.

PubMed

Doughty, Christopher E; Metcalfe, D B; Girardin, C A J; Amézquita, F Farfán; Cabrera, D Galiano; Huasco, W Huaraca; Silva-Espejo, J E; Araujo-Murakami, A; da Costa, M C; Rocha, W; Feldpausch, T R; Mendoza, A L M; da Costa, A C L; Meir, P; Phillips, O L; Malhi, Y

2015-03-05

In 2005 and 2010 the Amazon basin experienced two strong droughts, driven by shifts in the tropical hydrological regime possibly associated with global climate change, as predicted by some global models. Tree mortality increased after the 2005 drought, and regional atmospheric inversion modelling showed basin-wide decreases in CO2 uptake in 2010 compared with 2011 (ref. 5). But the response of tropical forest carbon cycling to these droughts is not fully understood and there has been no detailed multi-site investigation in situ. Here we use several years of data from a network of thirteen 1-ha forest plots spread throughout South America, where each component of net primary production (NPP), autotrophic respiration and heterotrophic respiration is measured separately, to develop a better mechanistic understanding of the impact of the 2010 drought on the Amazon forest. We find that total NPP remained constant throughout the drought. However, towards the end of the drought, autotrophic respiration, especially in roots and stems, declined significantly compared with measurements in 2009 made in the absence of drought, with extended decreases in autotrophic respiration in the three driest plots. In the year after the drought, total NPP remained constant but the allocation of carbon shifted towards canopy NPP and away from fine-root NPP. Both leaf-level and plot-level measurements indicate that severe drought suppresses photosynthesis. Scaling these measurements to the entire Amazon basin with rainfall data, we estimate that drought suppressed Amazon-wide photosynthesis in 2010 by 0.38 petagrams of carbon (0.23-0.53 petagrams of carbon). Overall, we find that during this drought, instead of reducing total NPP, trees prioritized growth by reducing autotrophic respiration that was unrelated to growth. This suggests that trees decrease investment in tissue maintenance and defence, in line with eco-evolutionary theories that trees are competitively disadvantaged in the absence of growth. We propose that weakened maintenance and defence investment may, in turn, cause the increase in post-drought tree mortality observed at our plots.

Forest-rainfall cascades buffer against drought across the Amazon

NASA Astrophysics Data System (ADS)

Staal, Arie; Tuinenburg, Obbe A.; Bosmans, Joyce H. C.; Holmgren, Milena; van Nes, Egbert H.; Scheffer, Marten; Zemp, Delphine Clara; Dekker, Stefan C.

2018-06-01

Tree transpiration in the Amazon may enhance rainfall for downwind forests. Until now it has been unclear how this cascading effect plays out across the basin. Here, we calculate local forest transpiration and the subsequent trajectories of transpired water through the atmosphere in high spatial and temporal detail. We estimate that one-third of Amazon rainfall originates within its own basin, of which two-thirds has been transpired. Forests in the southern half of the basin contribute most to the stability of other forests in this way, whereas forests in the south-western Amazon are particularly dependent on transpired-water subsidies. These forest-rainfall cascades buffer the effects of drought and reveal a mechanism by which deforestation can compromise the resilience of the Amazon forest system in the face of future climatic extremes.

El Niño drought increased canopy turnover in Amazon forests.

PubMed

Leitold, Veronika; Morton, Douglas C; Longo, Marcos; Dos-Santos, Maiza Nara; Keller, Michael; Scaranello, Marcos

2018-03-25

Amazon droughts, including the 2015-2016 El Niño, may reduce forest net primary productivity and increase canopy tree mortality, thereby altering both the short- and the long-term net forest carbon balance. Given the broad extent of drought impacts, inventory plots or eddy flux towers may not capture regional variability in forest response to drought. We used multi-temporal airborne Lidar data and field measurements of coarse woody debris to estimate patterns of canopy turnover and associated carbon losses in intact and fragmented forests in the central Brazilian Amazon between 2013-2014 and 2014-2016. Average annualized canopy turnover rates increased by 65% during the drought period in both intact and fragmented forests. The average size and height of turnover events was similar for both time intervals, in contrast to expectations that the 2015-2016 El Niño drought would disproportionally affect large trees. Lidar-biomass relationships between canopy turnover and field measurements of coarse woody debris were modest (R 2  ≈ 0.3), given similar coarse woody debris production and Lidar-derived changes in canopy volume from single tree and multiple branch fall events. Our findings suggest that El Niño conditions accelerated canopy turnover in central Amazon forests, increasing coarse woody debris production by 62% to 1.22 Mg C ha -1  yr -1 in drought years . No claim to original US Government works New Phytologist © 2018 New Phytologist Trust.

Structure and tree species composition in different habitats of savanna used by indigenous people in the Northern Brazilian Amazon.

PubMed

de Oliveira, Rodrigo Leonardo Costa; Farias, Hugo Leonardo Sousa; Perdiz, Ricardo de Oliveira; Scudeller, Veridiana Vizoni; Imbrozio Barbosa, Reinaldo

2017-01-01

Woody plant diversity from the Amazonian savannas has been poorly quantified. In order to improve the knowledge on wood plants of these regional ecosystems, a tree inventory was carried out in four different habitats used by indigenous people living in the savanna areas of the Northern Brazilian Amazon. The habitats were divided into two types (or groups) of vegetation formations: forest (riparian forest, forest island, and buritizal = Mauritia palm formation) and non-forest (typical savanna). The inventory was carried out in two hectares established in the Darora Indigenous Community region, north of the state of Roraima. The typical savanna is the most densely populated area (709 stems ha -1 ); however, it has the lowest tree species richness (nine species, seven families) in relation to typical forest habitats: riparian forest (22 species, 13 families and 202 stems ha -1 ), forest islands (13 species, 10 families and 264 stems ha -1 ), and buritizal (19 species, 15 families and 600 stems ha -1 ). The tree structure (density and dominance) of the forest habitats located in the savanna areas studied in this work is smaller in relation to forest habitats derived from continuous areas of other parts of the Amazon. These environments are derived from Paleoclimatic fragmentation, and are currently affected by the impact of intensive use of natural resources as timberselective logging and some land conversion for agriculture.

Drought-induced mortality patterns and rapid biomass recovery in a terra firme forest in the Colombian Amazon.

PubMed

Zuleta, Daniel; Duque, Alvaro; Cardenas, Dairon; Muller-Landau, Helene C; Davies, Stuart J

2017-10-01

Extreme climatic events affecting the Amazon region are expected to become more frequent under ongoing climate change. In this study, we assessed the responses to the 2010 drought of over 14,000 trees ≥10 cm dbh in a 25 ha lowland forest plot in the Colombian Amazon and how these responses varied among topographically defined habitats, with tree size, and with species wood density. Tree mortality was significantly higher during the 2010-2013 period immediately after the drought than in 2007-2010. The post-drought increase in mortality was stronger for trees located in valleys (+243%) than for those located on slopes (+67%) and ridges (+57%). Tree-based generalized linear mixed models showed a significant negative effect of species wood density on mortality and no effect of tree size. Despite the elevated post-drought mortality, aboveground biomass increased from 2007 to 2013 by 1.62 Mg ha -1  yr -1 (95% CI 0.80-2.43 Mg ha -1  yr -1 ). Biomass change varied among habitats, with no significant increase on the slopes (1.05, 95% CI -0.76 to 2.85 Mg ha -1  yr -1 ), a significant increase in the valleys (1.33, 95% CI 0.37-2.34 Mg ha -1  yr -1 ), and a strong increase on the ridges (2.79, 95% CI 1.20-4.21 Mg ha -1  yr -1 ). These results indicate a high carbon resilience of this forest to the 2010 drought due to habitat-associated and interspecific heterogeneity in responses including directional changes in functional composition driven by enhanced performance of drought-tolerant species that inhabit the drier ridges. © 2017 by the Ecological Society of America.

Neogene origins and implied warmth tolerance of Amazon tree species

PubMed Central

Dick, Christopher W; Lewis, Simon L; Maslin, Mark; Bermingham, Eldredge

2013-01-01

Tropical rain forest has been a persistent feature in South America for at least 55 million years. The future of the contemporary Amazon forest is uncertain, however, as the region is entering conditions with no past analogue, combining rapidly increasing air temperatures, high atmospheric carbon dioxide concentrations, possible extreme droughts, and extensive removal and modification by humans. Given the long-term Cenozoic cooling trend, it is unknown whether Amazon forests can tolerate air temperature increases, with suggestions that lowland forests lack warm-adapted taxa, leading to inevitable species losses. In response to this uncertainty, we posit a simple hypothesis: the older the age of a species prior to the Pleistocene, the warmer the climate it has previously survived, with Pliocene (2.6–5 Ma) and late-Miocene (8–10 Ma) air temperature across Amazonia being similar to 2100 temperature projections under low and high carbon emission scenarios, respectively. Using comparative phylogeographic analyses, we show that 9 of 12 widespread Amazon tree species have Pliocene or earlier lineages (>2.6 Ma), with seven dating from the Miocene (>5.6 Ma) and three >8 Ma. The remarkably old age of these species suggest that Amazon forests passed through warmth similar to 2100 levels and that, in the absence of other major environmental changes, near-term high temperature-induced mass species extinction is unlikely. PMID:23404439

A new species of Tropidopedia from the Amazon rainforest, Brazil (Hymenoptera: Apidae), with a revised phylogenetic overview of the genus.

PubMed

Mahlmann, Thiago; De Oliveira, Marcio L

2015-10-15

We describe a new species of the bee tribe Tapinotaspidini, Tropidopedia guaranae Mahlmann & Oliveira sp. n. from the Amazon rainforest, Amazonas, Brazil. We emend the phylogenetic tree of Aguiar & Melo (2007) to include the new species and comment upon some characters presented by those authors.

Toward a Tree-of-Life for the boas and pythons: multilocus species-level phylogeny with unprecedented taxon sampling.

PubMed

Graham Reynolds, R; Niemiller, Matthew L; Revell, Liam J

2014-02-01

Snakes in the families Boidae and Pythonidae constitute some of the most spectacular reptiles and comprise an enormous diversity of morphology, behavior, and ecology. While many species of boas and pythons are familiar, taxonomy and evolutionary relationships within these families remain contentious and fluid. A major effort in evolutionary and conservation biology is to assemble a comprehensive Tree-of-Life, or a macro-scale phylogenetic hypothesis, for all known life on Earth. No previously published study has produced a species-level molecular phylogeny for more than 61% of boa species or 65% of python species. Using both novel and previously published sequence data, we have produced a species-level phylogeny for 84.5% of boid species and 82.5% of pythonid species, contextualized within a larger phylogeny of henophidian snakes. We obtained new sequence data for three boid, one pythonid, and two tropidophiid taxa which have never previously been included in a molecular study, in addition to generating novel sequences for seven genes across an additional 12 taxa. We compiled an 11-gene dataset for 127 taxa, consisting of the mitochondrial genes CYTB, 12S, and 16S, and the nuclear genes bdnf, bmp2, c-mos, gpr35, rag1, ntf3, odc, and slc30a1, totaling up to 7561 base pairs per taxon. We analyzed this dataset using both maximum likelihood and Bayesian inference and recovered a well-supported phylogeny for these species. We found significant evidence of discordance between taxonomy and evolutionary relationships in the genera Tropidophis, Morelia, Liasis, and Leiopython, and we found support for elevating two previously suggested boid species. We suggest a revised taxonomy for the boas (13 genera, 58 species) and pythons (8 genera, 40 species), review relationships between our study and the many other molecular phylogenetic studies of henophidian snakes, and present a taxonomic database and alignment which may be easily used and built upon by other researchers. Copyright © 2013 Elsevier Inc. All rights reserved.

Sampling procedures for inventory of commercial volume tree species in Amazon Forest.

PubMed

Netto, Sylvio P; Pelissari, Allan L; Cysneiros, Vinicius C; Bonazza, Marcelo; Sanquetta, Carlos R

2017-01-01

The spatial distribution of tropical tree species can affect the consistency of the estimators in commercial forest inventories, therefore, appropriate sampling procedures are required to survey species with different spatial patterns in the Amazon Forest. For this, the present study aims to evaluate the conventional sampling procedures and introduce the adaptive cluster sampling for volumetric inventories of Amazonian tree species, considering the hypotheses that the density, the spatial distribution and the zero-plots affect the consistency of the estimators, and that the adaptive cluster sampling allows to obtain more accurate volumetric estimation. We use data from a census carried out in Jamari National Forest, Brazil, where trees with diameters equal to or higher than 40 cm were measured in 1,355 plots. Species with different spatial patterns were selected and sampled with simple random sampling, systematic sampling, linear cluster sampling and adaptive cluster sampling, whereby the accuracy of the volumetric estimation and presence of zero-plots were evaluated. The sampling procedures applied to species were affected by the low density of trees and the large number of zero-plots, wherein the adaptive clusters allowed concentrating the sampling effort in plots with trees and, thus, agglutinating more representative samples to estimate the commercial volume.

Short-term effects of reduced-impact logging on Copaifera spp. (Fabaceae) regeneration in eastern Amazon

Treesearch

Carine Klauberg; Edson Vidal; Carlos Alberto Silva; Andrew Thomas Hudak; Manuela Oliveira; Pedro Higuchi

2017-01-01

Timber management directly influences the population dynamics of tree species, like Copaifera spp. (copaíba), which provide oil-resin with ecological and economic importance. The aim of this study was to evaluate the structure and population dynamics of Copaifera in unmanaged and managed stands by reduced-impact logging (RIL) in eastern Amazon in Pará state, Brazil....

Flexible mating system in a logged population of Swietenia macrophylla King (Meliaceae): implications for the management of a threatened neotropical tree species

Treesearch

Maristerra R. Lemes; Dario Grattapaglia; James Grogan; John Proctor; Rog& eacute Gribel; rio

2007-01-01

Microsatellites were used to evaluate the mating system of the remaining trees in a logged population of Swietenia macrophylla, a highly valuable and threatened hardwood species, in the Brazilian Amazon. A total of 25 open pollinated progeny arrays of 16 individuals, with their mother trees, were genotyped using eight highly polymorphic...

Windthrows increase soil carbon stocks in a central Amazon forest

NASA Astrophysics Data System (ADS)

dos Santos, Leandro T.; Magnabosco Marra, Daniel; Trumbore, Susan; de Camargo, Plínio B.; Negrón-Juárez, Robinson I.; Lima, Adriano J. N.; Ribeiro, Gabriel H. P. M.; dos Santos, Joaquim; Higuchi, Niro

2016-03-01

Windthrows change forest structure and species composition in central Amazon forests. However, the effects of widespread tree mortality associated with wind disturbances on soil properties have not yet been described in this vast region. We investigated short-term effects (7 years after disturbance) of widespread tree mortality caused by a squall line event from mid-January of 2005 on soil carbon stocks and concentrations in a central Amazon terra firme forest. The soil carbon stock (averaged over a 0-30 cm depth profile) in disturbed plots (61.4 ± 8.2 Mg ha-1, mean ±95 % confidence interval) was marginally higher (p = 0.09) than that from undisturbed plots (47.7 ± 13.6 Mg ha-1). The soil organic carbon concentration in disturbed plots (2.0 ± 0.17 %) was significantly higher (p < 0.001) than that from undisturbed plots (1.36 ± 0.24 %). Moreover, soil carbon stocks were positively correlated with soil clay content (r2 = 0.332, r = 0.575 and p = 0.019) and with tree mortality intensity (r2 = 0.257, r = 0.506 and p = 0.045). Our results indicate that large inputs of plant litter associated with large windthrow events cause a short-term increase in soil carbon content, and the degree of increase is related to soil clay content and tree mortality intensity. The higher carbon content and potentially higher nutrient availability in soils from areas recovering from windthrows may favor forest regrowth and increase vegetation resilience.

Widespread Amazon forest tree mortality from a single cross-basin squall line event

NASA Astrophysics Data System (ADS)

Negrón-Juárez, Robinson I.; Chambers, Jeffrey Q.; Guimaraes, Giuliano; Zeng, Hongcheng; Raupp, Carlos F. M.; Marra, Daniel M.; Ribeiro, Gabriel H. P. M.; Saatchi, Sassan S.; Nelson, Bruce W.; Higuchi, Niro

2010-08-01

Climate change is expected to increase the intensity of extreme precipitation events in Amazonia that in turn might produce more forest blowdowns associated with convective storms. Yet quantitative tree mortality associated with convective storms has never been reported across Amazonia, representing an important additional source of carbon to the atmosphere. Here we demonstrate that a single squall line (aligned cluster of convective storm cells) propagating across Amazonia in January, 2005, caused widespread forest tree mortality and may have contributed to the elevated mortality observed that year. Forest plot data demonstrated that the same year represented the second highest mortality rate over a 15-year annual monitoring interval. Over the Manaus region, disturbed forest patches generated by the squall followed a power-law distribution (scaling exponent α = 1.48) and produced a mortality of 0.3-0.5 million trees, equivalent to 30% of the observed annual deforestation reported in 2005 over the same area. Basin-wide, potential tree mortality from this one event was estimated at 542 ± 121 million trees, equivalent to 23% of the mean annual biomass accumulation estimated for these forests. Our results highlight the vulnerability of Amazon trees to wind-driven mortality associated with convective storms. Storm intensity is expected to increase with a warming climate, which would result in additional tree mortality and carbon release to the atmosphere, with the potential to further warm the climate system.

Molecular identification of wild triatomines of the genus Rhodnius in the Bolivian Amazon: Strategy and current difficulties.

PubMed

Brenière, Simone Frédérique; Condori, Edwin Wily; Buitrago, Rosio; Sosa, Luis Fernando; Macedo, Catarina Lopes; Barnabé, Christian

2017-07-01

The Amazon region has recently been considered as endemic in Latin America. In Bolivia, the vast Amazon region is undergoing considerable human migrations and substantial anthropization of the environment, potentially renewing the danger of establishing the transmission of Chagas disease. The cases of human oral contamination occurring in 2010 in the town of Guayaramerín provided reasons to intensify research. As a result, the goal of this study was to characterize the species of sylvatic triatomines circulating in the surroundings of Yucumo (Beni, Bolivia), a small Amazonian city at the foot of the Andes between the capital (La Paz) and Trinidad the largest city of Beni. The triatomine captures were performed with mice-baited adhesive traps mostly settled in palm trees in forest fragments and pastures. Species were identified by morphological observation, dissection of genitalia, and sequencing of three mitochondrial gene fragments and one nuclear fragment. Molecular analysis was based on (i) the identity score of the haplotypes with GenBank sequences through the BLAST algorithm and (ii) construction of phylogenetic trees. Thirty-four triatomines, all belonging to the Rhodnius genus, of which two were adult males, were captured in palm trees in forest fragments and pastures (overall infestation rate, 12.3%). The morphology of the phallic structures in the two males confirmed the R. stali species. For the other specimens, after molecular sequencing, only one specimen was identified with confidence as belonging to Rhodnius robustus, the others belonged to one of the species of the Rhodnius pictipes complex, probably Rhodnius stali. The two species, R. robustus and R. stali, had previously been reported in the Alto Beni region (edge of the Amazon region), but not yet in the Beni department situated in the Amazon region. Furthermore, the difficulties of molecular characterization of closely related species within the three complexes of the genus Rhodnius are highlighted and discussed. Copyright © 2017 Elsevier B.V. All rights reserved.

Management implications of long-term tree growth and mortality rates: A modeling study of big-leaf mahogany (Swietenia macrophylla) in the Brazilian Amazon

Treesearch

C.M. Free; R.M. Landis; J. Grogan; M.D. Schulze; M. Lentini; O. Dunisch; NO-VALUE

2014-01-01

Knowledge of tree age-size relationships is essential towards evaluating the sustainability of harvest regulations that include minimum diameter cutting limits and fixed-length cutting cycles. Although many tropical trees form annual growth rings and can be aged from discs or cores, destructive sampling is not always an option for valuable or threatened species. We...

Effects of Natural and Experimental Drought on Growth and Water Use Efficiency in Amazon trees

NASA Astrophysics Data System (ADS)

Vadeboncoeur, M. A.; Brum, M., Jr.; Oliveira, R. S.; Moutinho, V. H. P.; Flores, C. F.; Llerena, C. A.; Palace, M. W.; Asbjornsen, H.

2016-12-01

Severe regional droughts in the Amazon basin, mostly associated with El Nino events, have attracted considerable attention over the past decade, especially with regard to their effects on tree mortality, vulnerability to fire, and changes in the terrestrial budgets of carbon, water, and energy. Understanding the complex responses of forest ecosystems to such droughts is key to predicting how these globally critical forest ecosystems will respond to a changing climate with higher temperatures and greater precipitation variability. Though tree rings are not formed by all tropical tree species, they offer a unique retrospective approach for investigating patterns of climatic responses in both carbon cycling (primary production inferred from diameter growth) and water cycling (water use efficiency calculated from stable C isotope ratios). We sampled increment cores from 40 tree species at the Tapajos National Forest in Brazil, as well as the Cocha Cashu Biological Station in Peru, for an isotopic dendrochronological investigation into the effects of past droughts on the growth and water-use efficiency of canopy and mid-story tree species. We found that many but not all trees responded to drought years with periods of reduced growth lasting 2-3 years. Forthcoming data on carbon isotope ratios will allow us to compare the sensitivity of species and sites in terms of water use under drought conditions.

The Amazon forest-rainfall feedback: the roles of transpiration and interception

NASA Astrophysics Data System (ADS)

Dekker, Stefan; Staal, Arie; Tuinenburg, Obbe

2017-04-01

In the Amazon, deep-rooted trees increase local transpiration and high tree cover increase local interception evaporation. These increased local evapotranspiration fluxes to the atmosphere have both positive effects on forests down-wind, as they stimulate rainfall. Although important for the functioning of the Amazon, we have an inadequate assessment on the strength and the timing of these forest-rainfall feedbacks. In this study we (i) estimate local forest transpiration and local interception evaporation, (ii) simulate the trajectories of these moisture flows through the atmosphere and (iii) quantify their contributions to the forest-rainfall feedback for the whole Amazon basin. To determine the atmospheric moisture flows in tropical South America we use a Lagrangian moisture tracking algorithm on 0.25° (c. 25 km) resolution with eight atmospheric layers on a monthly basis for the period 2003-2015. With our approach we account for multiple re-evaporation cycles of this moisture. We also calculate for each month the potential effects of forest loss on evapotranspiration. Combined, these calculations allow us to simulate the effects of land-cover changes on rainfall in downwind areas and estimate the effect on the forest. We found large regional and temporal differences in the importance how forest contribute to rainfall. The transpiration-rainfall feedback is highly important during the dry season. Between September-November, when large parts of the Amazon are at the end of the dry season, more than 50% of the rainfall is caused by the forests upstream. This means that droughts in the Amazon are alleviated by the forest. Furthermore, we found that much moisture cycles several times during its trajectory over the Amazon. After one evapotranspiration-rainfall cycle, more than 40% of the moisture is re-evaporated again. The interception-evaporation feedback is less important during droughts. Finally from our analysis, we show that the forest-rainfall feedback is essential for the resilience of the south-western and northern parts of the Amazon forest. Without the forest-rainfall feedbacks, these forest wouldn't exist.

Windthrows increase soil carbon stocks in a central Amazon forest

DOE PAGES

dos Santos, Leandro T.; Magnabosco Marra, Daniel; Trumbore, Susan; ...

2016-03-02

Windthrows change forest structure and species composition in central Amazon forests. However, the effects of widespread tree mortality associated with wind disturbances on soil properties have not yet been described in this vast region. We investigated short-term effects (7 years after disturbance) of widespread tree mortality caused by a squall line event from mid-January of 2005 on soil carbon stocks and concentrations in a central Amazon terra firme forest. The soil carbon stock (averaged over a 0–30 cm depth profile) in disturbed plots (61.4 ± 8.2 Mg ha -1, mean ±95 % confidence interval) was marginally higher ( p =more » 0.09) than that from undisturbed plots (47.7 ± 13.6 Mg ha -1). The soil organic carbon concentration in disturbed plots (2.0 ± 0.17 %) was significantly higher ( p < 0.001) than that from undisturbed plots (1.36 ± 0.24 %). Moreover, soil carbon stocks were positively correlated with soil clay content ( r 2 = 0.332, r = 0.575 and p = 0.019) and with tree mortality intensity ( r 2 = 0.257, r = 0.506 and p = 0.045). Our results indicate that large inputs of plant litter associated with large windthrow events cause a short-term increase in soil carbon content, and the degree of increase is related to soil clay content and tree mortality intensity. The higher carbon content and potentially higher nutrient availability in soils from areas recovering from windthrows may favor forest regrowth and increase vegetation resilience.« less

Windthrows increase soil carbon stocks in a central Amazon forest

DOE Office of Scientific and Technical Information (OSTI.GOV)

dos Santos, Leandro T.; Magnabosco Marra, Daniel; Trumbore, Susan

Windthrows change forest structure and species composition in central Amazon forests. However, the effects of widespread tree mortality associated with wind disturbances on soil properties have not yet been described in this vast region. We investigated short-term effects (7 years after disturbance) of widespread tree mortality caused by a squall line event from mid-January of 2005 on soil carbon stocks and concentrations in a central Amazon terra firme forest. The soil carbon stock (averaged over a 0–30 cm depth profile) in disturbed plots (61.4 ± 8.2 Mg ha -1, mean ±95 % confidence interval) was marginally higher ( p =more » 0.09) than that from undisturbed plots (47.7 ± 13.6 Mg ha -1). The soil organic carbon concentration in disturbed plots (2.0 ± 0.17 %) was significantly higher ( p < 0.001) than that from undisturbed plots (1.36 ± 0.24 %). Moreover, soil carbon stocks were positively correlated with soil clay content ( r 2 = 0.332, r = 0.575 and p = 0.019) and with tree mortality intensity ( r 2 = 0.257, r = 0.506 and p = 0.045). Our results indicate that large inputs of plant litter associated with large windthrow events cause a short-term increase in soil carbon content, and the degree of increase is related to soil clay content and tree mortality intensity. The higher carbon content and potentially higher nutrient availability in soils from areas recovering from windthrows may favor forest regrowth and increase vegetation resilience.« less

Transitions between Andean and Amazonian centers of endemism in the radiation of some arboreal rodents

PubMed Central

2013-01-01

Background The tropical Andes and Amazon are among the richest regions of endemism for mammals, and each has given rise to extensive in situ radiations. Various animal lineages have radiated ex situ after colonizing one of these regions from the other: Amazonian clades of dendrobatid frogs and passerine birds may have Andean ancestry, and transitions from the Amazon to Andes may be even more common. To examine biogeographic transitions between these regions, we investigated the evolutionary history of three clades of rodents in the family Echimyidae: bamboo rats (Dactylomys-Olallamys-Kannabateomys), spiny tree-rats (Mesomys-Lonchothrix), and brush-tailed rats (Isothrix). Each clade is distributed in both the Andes and Amazonia, and is more diverse in the lowlands. We used two mitochondrial (cyt-b and 12S) and three nuclear (GHR, vWF, and RAG1) markers to reconstruct their phylogenetic relationships. Tree topologies and ancestral geographic ranges were then used to determine whether Andean forms were basal to or derived from lowland radiations. Results Four biogeographic transitions are identified among the generic radiations. The bamboo rat clade unambiguously originated in the Amazon ca. 9 Ma, followed by either one early transition to the Andes (Olallamys) and a later move to the Amazon (Dactylomys), or two later shifts to the Andes (one in each genus). The Andean species of both Dactylomys and Isothrix are sister to their lowland species, raising the possibility that highland forms colonized the Amazon Basin. However, uncertainty in their reconstructed ancestral ranges obscures the origin of these transitions. The lone Andean species of Mesomys is confidently nested within the lowland radiation, thereby indicating an Amazon-to-Andes transition ca. 2 Ma. Conclusions Differences in the timing of these biogeographic transitions do not appear to explain the different polarities of these trees. Instead, even within the radiation of a single family, both Andean and Amazonian centers of endemism appear enriched by lineages that originated in the other region. Our survey of other South American lineages suggests a pattern of reciprocal exchange between these regions—among mammals, birds, amphibians, and insects we found no fewer than 87 transitions between the Andes and Amazon from Miocene-Pleistocene. Because no clear trend emerges between the timing and polarity of transitions, or in their relative frequency, we suggest that reciprocal exchange between tropical highland and lowland faunas in South America has been a continual process since ca. 12 Ma. PMID:24015814

Windthrows increase soil carbon stocks in a Central Amazon forest

NASA Astrophysics Data System (ADS)

dos Santos, L. T.; Magnabosco Marra, D.; Trumbore, S.; Camargo, P. B.; Chambers, J. Q.; Negrón-Juárez, R. I.; Lima, A. J. N.; Ribeiro, G. H. P. M.; dos Santos, J.; Higuchi, N.

2015-12-01

Windthrows change forest structure and species composition in Central Amazon forests. However, the effects of widespread tree mortality associated with wind-disturbances on soil properties have not yet been described. In this study, we investigated short-term effects (seven years after disturbance) of a windthrow event on soil carbon stocks and concentrations in a Central Amazon terra firme forest. The soil carbon stock (averaged over a 0-30 cm depth profile) in disturbed plots (61.4 ± 4.18 Mg ha-1, mean ± standard error) was marginally higher (p = 0.009) than that from undisturbed plots (47.7 ± 6.95 Mg ha-1). The soil organic carbon concentration in disturbed plots (2.0 ± 0.08 %) was significantly higher (p < 0.001) than that from undisturbed plots (1.36 ± 0.12 %). Moreover, soil carbon stocks were positively correlated with soil clay content (r = 0.575 and p = 0.019) and with tree mortality intensity (r = 0.493 and p = 0.045). Our results indicate that large inputs of plant litter associated with large windthrow events cause a short-term increase in soil carbon content, and the degree of increase is related to soil clay content and tree mortality intensity. Higher nutrient availability in soils from large canopy gaps created by wind disturbance may increase vegetation resilience and favor forest recovery.

Trees of the Tapajós: a photographic field guide

Treesearch

John A. Parrotta; John K. Francis; Rionaldo R. de Almeida

1995-01-01

This book contains illustrations and descriptions, in English and Portuguese, of 172 tree species com­monly found in primary and secondary forests of the centrai Brazilian Amazon region, focussing on the Tapajos National Forest in western Para State. Photographic illustrations for each species include foliage (plus flowers and/or fruits for some species), seedling,...

GoAmazon 2014/15. SRI-PTR-ToFMS Field Campaign Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guenther, A.

Our science team, including Dr. Alex Guenther (previously at Pacific Northwest National Laboratory (PNNL) and now at the University of California, Irvine) Dr. Saewung Kim and Dr. Roger Seco, and Dr. Jim Smith (previously at NCAR and now at UC Irvine), deployed a selected reagent ion – proton transfer reaction – time-of-flight mass spectrometer (SRI-PTR-TOFMS) to the T3 site during the GoAmazon study. One of the major uncertainties in climate model simulations is the effects of aerosols on radiative forcing, and a better understanding of the factors controlling aerosol distributions and life cycle is urgently needed. Aerosols contribute directly tomore » the Earth’s radiation balance by scattering or absorbing light as a function of their physical properties and indirectly through particle-cloud interactions that lead to cloud formation and the modification of cloud properties. On a global scale, the dominant source of organic aerosol is biogenic volatile organic compounds (BVOC) emitted from terrestrial ecosystems. These organic aerosols are a major part of the total mass of all airborne particles and are currently not sufficiently represented in climate models. To incorporate quantitatively the effects of BVOCs and their oxidation products on biogenic organic aerosol (BOA) requires parameterization of their production in terrestrial ecosystems and their atmospheric transformations. This project was designed to reduce the gaps in our understanding of how these processes control BVOCs and BOAs, and their impact on climate. This was accomplished by wet and dry season measurements at the U.S. Department of Energy (DOE)’s Atmospheric Radiation Measurement (ARM) Climate Research Facility T3 site along with a comprehensive suite of complementary measurements. The specific goals were to 1) measure and mechanistically understand the factors affecting aerosol distributions over a tropical rain forest, especially the effects of anthropogenic pollution as a perturbation to the natural state, and 2) develop and implement an upscaling analysis from this new data set and knowledge of aerosol distributions to prognosticate possible climatic impacts of present-day urban pollution and possibly greater pollution in the future.« less

Accord No. 334 of 18 August 1989.

PubMed

1989-01-01

This Accord creates the Programme for Forestation and Reforestation of the Amazon Region of Ecuador with Native Species, under the control of the National Forestry Directorate. The preamble to the Accord states that the Programme has been created, in part, to stop the indiscriminate exploitation of natural trees. Accord No. 332 of 18 August 1989, issued by the Ministry of Agriculture and Livestock, creates under the Regional Subsecretariat for the Amazon the Agency of Natural Resources of the Amazon Region of Ecuador to coordinate activities taking place in that area with the Institute for Settlement of the Amazon Region of Ecuador and relevant state organizations. The preamble to the Accord states that the Agency has been created, in part, to ensure the rational and harmonic development of the region and to preserve the region's natural resources. See Registro Oficial, No. 262, 28 August 1989, p. 2.

Questioning the Influence of Sunspots on Amazon Hydrology: Even a Broken Clock Tells the Right Time Twice a Day

NASA Astrophysics Data System (ADS)

Baker, J. C. A.; Gloor, M.; Boom, A.; Neill, D. A.; Cintra, B. B. L.; Clerici, S. J.; Brienen, R. J. W.

2018-02-01

It was suggested in a recent article that sunspots drive decadal variation in Amazon River flow. This conclusion was based on a novel time series decomposition method used to extract a decadal signal from the Amazon River record. We have extended this analysis back in time, using a new hydrological proxy record of tree ring oxygen isotopes (δ18OTR). Consistent with the findings of Antico and Torres, we find a positive correlation between sunspots and the decadal δ18OTR cycle from 1903 to 2012 (r = 0.60, p < 0.001). However, the relationship does not persist into the preceding century and even becomes weakly negative (r = -0.30, p = 0.11, 1799-1902). This result casts considerable doubt over the mechanism by which sunspots are purported to influence Amazon hydrology.

Hydrologic resilience and Amazon productivity.

PubMed

Ahlström, Anders; Canadell, Josep G; Schurgers, Guy; Wu, Minchao; Berry, Joseph A; Guan, Kaiyu; Jackson, Robert B

2017-08-30

The Amazon rainforest is disproportionately important for global carbon storage and biodiversity. The system couples the atmosphere and land, with moist forest that depends on convection to sustain gross primary productivity and growth. Earth system models that estimate future climate and vegetation show little agreement in Amazon simulations. Here we show that biases in internally generated climate, primarily precipitation, explain most of the uncertainty in Earth system model results; models, empirical data and theory converge when precipitation biases are accounted for. Gross primary productivity, above-ground biomass and tree cover align on a hydrological relationship with a breakpoint at ~2000 mm annual precipitation, where the system transitions between water and radiation limitation of evapotranspiration. The breakpoint appears to be fairly stable in the future, suggesting resilience of the Amazon to climate change. Changes in precipitation and land use are therefore more likely to govern biomass and vegetation structure in Amazonia.Earth system model simulations of future climate in the Amazon show little agreement. Here, the authors show that biases in internally generated climate explain most of this uncertainty and that the balance between water-saturated and water-limited evapotranspiration controls the Amazon resilience to climate change.

Palms versus trees: water use characteristics of native fruit-bearing plant species in the Central Amazon

NASA Astrophysics Data System (ADS)

Kunert, N.; Barros, P.; Higuchi, N.

2012-12-01

Native fruiting plants are widely cultivated in the Amazon but only little information on their water use characteristics can be found in the literature. Due to the growing local consumption and the increasing popularity for new "exotic" fruits all over Brazil and worldwide, additional new plantations cultivating such fruit-bearing species might be established in the Amazon in the future. These new plantations will affect the water table of the cultivated areas, however, the impact of these changes on the regional hydrology are not known. We, therefore, decided to study plant water use characteristics of two native fruit plants commonly occurring in the Amazon region, a tree species (Cupuaçu, Theobroma grandiflorum, (Willd. ex Spreng.) Schum., Malvaceae) and a palm species (Açai, Euterpe oleraceae Mart., Arecaceae). This study was conducted in a fruit plantation close to the city of Manaus, in the Central Amazon, Brazil. The objectives of our study were 1) to compare variables controlling plant water use and 2) to identify differences in water use between woody monocot and dicot plant species. We chose three representative individuals with well-sun-exposed crowns for each species, which were equipped with Granier-type thermal dissipation probes to measure sap flux density continuously for six weeks from August 1st 2011 until September 6th 2011. We used a simple sap flux model with two environmental variables, photosynthetic photon flux density and vapor pressure deficit, to compare sap flux densities between species. We achieved a good model fit and modeled sap flux densities corresponded very well with the actual measured values. No significant differences among species in sap flux densities were indicated by the model. Overall, palms had a 3.5 fold higher water consumption compared to trees with similar diameter. Water use scaled independent from species with the size of the conductive xylem area (r2 = 0.85), so that the higher water use of the palms was largely explained by higher conductivity of the xylem cross section area. Palms transpired a mean of 1.67 mm m-2 of water per unit crown projection area per day, whereas trees transpired only 0.30 mm m-2 per day, resulting in a 5.6 times lower transpiration rate. We conclude that changes in the water table due to land use change are predictable and highly depending on the species planted in the area with altered land use.

Natural variation of selenium in Brazil nuts and soils from the Amazon region.

PubMed

Silva Junior, E C; Wadt, L H O; Silva, K E; Lima, R M B; Batista, K D; Guedes, M C; Carvalho, G S; Carvalho, T S; Reis, A R; Lopes, G; Guilherme, L R G

2017-12-01

Brazil nut tree (Bertholletia excelsa) is native of the Amazon rainforest. Brazil nuts are consumed worldwide and are known as the richest food source of selenium (Se). Yet, the reasoning for such Se contents is not well stablished. We evaluated the variation in Se concentration of Brazil nuts from Brazilian Amazon basin, as well as soil properties, including total Se concentration, of the soils sampled directly underneath the trees crown, aiming to investigate which soil properties influence Se accumulation in the nuts. The median Se concentration in Brazil nuts varied from 2.07 mg kg - 1 (in Mato Grosso state) to 68.15 mg kg - 1 (in Amazonas state). Therefore, depending on its origin, a single Brazil nut could provide from 11% (in the Mato Grosso state) up to 288% (in the Amazonas state) of the daily Se requirement for an adult man (70 μg). The total Se concentration in the soil also varied considerably, ranging from <65.76 to 625.91 μg kg - 1 , with highest Se concentrations being observed in soil samples from the state of Amazonas. Se accumulation in Brazil nuts generally increased in soils with higher total Se content, but decreased under acidic conditions in the soil. This indicates that, besides total soil Se concentration, soil acidity plays a major role in Se uptake by Brazil nut trees, possibly due to the importance of this soil property to Se retention in the soil. Copyright © 2017 Elsevier Ltd. All rights reserved.

Survival, growth and reproduction by big-leaf mahogany (Swietenia macrophylla) in open clearing vs. forested conditions in Brazil

Treesearch

James Grogan; Mark Schulze; Jurandir Galvao

2010-01-01

Big-leaf mahogany (Swietenia macrophylla) trees are often retained in agricultural fields and pastures for seed and timber production after selective logging and forest clearing in the Brazilian Amazon. At a forest management site in southeast Para´, we censused trees growing scattered across a large open clearing after forest removal and in heavily disturbed forest...

Contribution of aboveground plant respiration to carbon cycling in a Bornean tropical rainforet

NASA Astrophysics Data System (ADS)

Katayama, Ayumi; Tanaka, Kenzo; Ichie, Tomoaki; Kume, Tomonori; Matsumoto, Kazuho; Ohashi, Mizue; Kumagai, Tomo'omi

2014-05-01

Bornean tropical rainforests have a different characteristic from Amazonian tropical rainforests, that is, larger aboveground biomass caused by higher stand density of large trees. Larger biomass may cause different carbon cycling and allocation pattern. However, there are fewer studies on carbon allocation and each component in Bornean tropical rainforests, especially for aboveground plant respiration, compared to Amazonian forests. In this study, we measured woody tissue respiration and leaf respiration, and estimated those in ecosystem scale in a Bornean tropical rainforest. Then, we examined carbon allocation using the data of soil respiration and aboveground net primary production obtained from our previous studies. Woody tissue respiration rate was positively correlated with diameter at breast height (dbh) and stem growth rate. Using the relationships and biomass data, we estimated woody tissue respiration in ecosystem scale though methods of scaling resulted in different estimates values (4.52 - 9.33 MgC ha-1 yr-1). Woody tissue respiration based on surface area (8.88 MgC ha-1 yr-1) was larger than those in Amazon because of large aboveground biomass (563.0 Mg ha-1). Leaf respiration rate was positively correlated with height. Using the relationship and leaf area density data at each 5-m height, leaf respiration in ecosystem scale was estimated (9.46 MgC ha-1 yr-1), which was similar to those in Amazon because of comparable LAI (5.8 m2 m-2). Gross primary production estimated from biometric measurements (44.81 MgC ha-1 yr-1) was much higher than those in Amazon, and more carbon was allocated to woody tissue respiration and total belowground carbon flux. Large tree with dbh > 60cm accounted for about half of aboveground biomass and aboveground biomass increment. Soil respiration was also related to position of large trees, resulting in high soil respiration rate in this study site. Photosynthesis ability of top canopy for large trees was high and leaves for the large trees accounted for 30% of total, which can lead high GPP. These results suggest that large trees play considerable role in carbon cycling and make a distinctive carbon allocation in the Bornean tropical rainforest.

Spatial Pattern of Standing Timber Value across the Brazilian Amazon

PubMed Central

Ahmed, Sadia E.; Ewers, Robert M.

2012-01-01

The Amazon is a globally important system, providing a host of ecosystem services from climate regulation to food sources. It is also home to a quarter of all global diversity. Large swathes of forest are removed each year, and many models have attempted to predict the spatial patterns of this forest loss. The spatial patterns of deforestation are determined largely by the patterns of roads that open access to frontier areas and expansion of the road network in the Amazon is largely determined by profit seeking logging activities. Here we present predictions for the spatial distribution of standing value of timber across the Amazon. We show that the patterns of timber value reflect large-scale ecological gradients, determining the spatial distribution of functional traits of trees which are, in turn, correlated with timber values. We expect that understanding the spatial patterns of timber value across the Amazon will aid predictions of logging movements and thus predictions of potential future road developments. These predictions in turn will be of great use in estimating the spatial patterns of deforestation in this globally important biome. PMID:22590520

Modeling the Complex Impacts of Timber Harvests to Find Optimal Management Regimes for Amazon Tidal Floodplain Forests

PubMed Central

Fortini, Lucas B.; Cropper, Wendell P.; Zarin, Daniel J.

2015-01-01

At the Amazon estuary, the oldest logging frontier in the Amazon, no studies have comprehensively explored the potential long-term population and yield consequences of multiple timber harvests over time. Matrix population modeling is one way to simulate long-term impacts of tree harvests, but this approach has often ignored common impacts of tree harvests including incidental damage, changes in post-harvest demography, shifts in the distribution of merchantable trees, and shifts in stand composition. We designed a matrix-based forest management model that incorporates these harvest-related impacts so resulting simulations reflect forest stand dynamics under repeated timber harvests as well as the realities of local smallholder timber management systems. Using a wide range of values for management criteria (e.g., length of cutting cycle, minimum cut diameter), we projected the long-term population dynamics and yields of hundreds of timber management regimes in the Amazon estuary, where small-scale, unmechanized logging is an important economic activity. These results were then compared to find optimal stand-level and species-specific sustainable timber management (STM) regimes using a set of timber yield and population growth indicators. Prospects for STM in Amazonian tidal floodplain forests are better than for many other tropical forests. However, generally high stock recovery rates between harvests are due to the comparatively high projected mean annualized yields from fast-growing species that effectively counterbalance the projected yield declines from other species. For Amazonian tidal floodplain forests, national management guidelines provide neither the highest yields nor the highest sustained population growth for species under management. Our research shows that management guidelines specific to a region’s ecological settings can be further refined to consider differences in species demographic responses to repeated harvests. In principle, such fine-tuned management guidelines could make management more attractive, thus bridging the currently prevalent gap between tropical timber management practice and regulation. PMID:26322896

Modeling the complex impacts of timber harvests to find optimal management regimes for Amazon tidal floodplain forests

USGS Publications Warehouse

Fortini, Lucas B.; Cropper, Wendell P.; Zarin, Daniel J.

2015-01-01

At the Amazon estuary, the oldest logging frontier in the Amazon, no studies have comprehensively explored the potential long-term population and yield consequences of multiple timber harvests over time. Matrix population modeling is one way to simulate long-term impacts of tree harvests, but this approach has often ignored common impacts of tree harvests including incidental damage, changes in post-harvest demography, shifts in the distribution of merchantable trees, and shifts in stand composition. We designed a matrix-based forest management model that incorporates these harvest-related impacts so resulting simulations reflect forest stand dynamics under repeated timber harvests as well as the realities of local smallholder timber management systems. Using a wide range of values for management criteria (e.g., length of cutting cycle, minimum cut diameter), we projected the long-term population dynamics and yields of hundreds of timber management regimes in the Amazon estuary, where small-scale, unmechanized logging is an important economic activity. These results were then compared to find optimal stand-level and species-specific sustainable timber management (STM) regimes using a set of timber yield and population growth indicators. Prospects for STM in Amazonian tidal floodplain forests are better than for many other tropical forests. However, generally high stock recovery rates between harvests are due to the comparatively high projected mean annualized yields from fast-growing species that effectively counterbalance the projected yield declines from other species. For Amazonian tidal floodplain forests, national management guidelines provide neither the highest yields nor the highest sustained population growth for species under management. Our research shows that management guidelines specific to a region’s ecological settings can be further refined to consider differences in species demographic responses to repeated harvests. In principle, such fine-tuned management guidelines could make management more attractive, thus bridging the currently prevalent gap between tropical timber management practice and regulation.

Fast demographic traits promote high diversification rates of Amazonian trees

PubMed Central

Baker, Timothy R; Pennington, R Toby; Magallon, Susana; Gloor, Emanuel; Laurance, William F; Alexiades, Miguel; Alvarez, Esteban; Araujo, Alejandro; Arets, Eric J M M; Aymard, Gerardo; de Oliveira, Atila Alves; Amaral, Iêda; Arroyo, Luzmila; Bonal, Damien; Brienen, Roel J W; Chave, Jerome; Dexter, Kyle G; Di Fiore, Anthony; Eler, Eduardo; Feldpausch, Ted R; Ferreira, Leandro; Lopez-Gonzalez, Gabriela; van der Heijden, Geertje; Higuchi, Niro; Honorio, Eurídice; Huamantupa, Isau; Killeen, Tim J; Laurance, Susan; Leaño, Claudio; Lewis, Simon L; Malhi, Yadvinder; Marimon, Beatriz Schwantes; Marimon Junior, Ben Hur; Monteagudo Mendoza, Abel; Neill, David; Peñuela-Mora, Maria Cristina; Pitman, Nigel; Prieto, Adriana; Quesada, Carlos A; Ramírez, Fredy; Ramírez Angulo, Hirma; Rudas, Agustin; Ruschel, Ademir R; Salomão, Rafael P; de Andrade, Ana Segalin; Silva, J Natalino M; Silveira, Marcos; Simon, Marcelo F; Spironello, Wilson; ter Steege, Hans; Terborgh, John; Toledo, Marisol; Torres-Lezama, Armando; Vasquez, Rodolfo; Vieira, Ima Célia Guimarães; Vilanova, Emilio; Vos, Vincent A; Phillips, Oliver L; Wiens, John

2014-01-01

The Amazon rain forest sustains the world's highest tree diversity, but it remains unclear why some clades of trees are hyperdiverse, whereas others are not. Using dated phylogenies, estimates of current species richness and trait and demographic data from a large network of forest plots, we show that fast demographic traits – short turnover times – are associated with high diversification rates across 51 clades of canopy trees. This relationship is robust to assuming that diversification rates are either constant or decline over time, and occurs in a wide range of Neotropical tree lineages. This finding reveals the crucial role of intrinsic, ecological variation among clades for understanding the origin of the remarkable diversity of Amazonian trees and forests. PMID:24589190

The importance of chemosensory clues in Aguaruna tree classification and identification.

PubMed

Jernigan, Kevin A

2008-05-03

The ethnobotanical literature still contains few detailed descriptions of the sensory criteria people use for judging membership in taxonomic categories. Olfactory criteria in particular have been explored very little. This paper will describe the importance of odor for woody plant taxonomy and identification among the Aguaruna Jívaro of the northern Peruvian Amazon, focusing on the Aguaruna category númi (trees excluding palms). Aguaruna informants almost always place trees that they consider to have a similar odor together as kumpají - 'companions,' a metaphor they use to describe trees that they consider to be related. The research took place in several Aguaruna communities in the upper Marañón region of the Peruvian Amazon. Structured interview data focus on informant criteria for membership in various folk taxa of trees. Informants were also asked to explain what members of each group of related companions had in common. This paper focuses on odor and taste criteria that came to light during these structured interviews. Botanical voucher specimens were collected, wherever possible. Of the 182 tree folk genera recorded in this study, 51 (28%) were widely considered to possess a distinctive odor. Thirty nine of those (76%) were said to have odors similar to some other tree, while the other 24% had unique odors. Aguaruna informants very rarely described tree odors in non-botanical terms. Taste was used mostly to describe trees with edible fruits. Trees judged to be related were nearly always in the same botanical family. The results of this study illustrate that odor of bark, sap, flowers, fruit and leaves are important clues that help the Aguaruna to judge the relatedness of trees found in their local environment. In contrast, taste appears to play a more limited role. The results suggest a more general ethnobotanical hypothesis that could be tested in other cultural settings: people tend to consider plants with similar odors to be related, but say that plants with unique odors are unrelated to any other plants.

Hydraulic Strategies and Response to El Niño Drought in Amazon Rainforest

NASA Astrophysics Data System (ADS)

Ivanov, V. Y.; Oliveira, R. S.; Brum, M., Jr.; Prohaska, N.; Albert, L.; Taylor, T.; Fatichi, S.; Agee, E.; Saleska, S. R.; Oliveira Junior, R. C.; Dye, D. G.; Wiedemann, K. T.

2016-12-01

Variability of tree-scale carbon and water uptake strategies is increasingly recognized to be of paramount importance for understanding the limits of drought resilience of tropical rainforests. Here, we present evidence of such variations using a set of ecohydrologic data collected through the DOE "GoAmazon" project, with a specific emphasis on the response of a seasonal rainforest in eastern Amazonia to the strong 2015 El Niño drought. Data from 50 sapflow sensors are combined with high-frequency observations on stem and leaf water potential as well as precision dendrometry. The emerging behavior shows a spectrum of successfully co-existing hydraulic strategies, ranging from tight control against xylem failure to a near lack of regulation of the water flux through the stomata, implying the existence of other mechanisms to deal with extreme tissue dehydration. These strategies also exhibit coupling with tree growth patterns and dynamics of non-structural carbohydrates, with the latter type of trees allocating more carbon to growth and less to internal reserves, while the opposite is true for the former tree type. The results suggest a new approach for integrating hydraulic traits and carbon-cycle dynamics, and a strategy for mapping traits to function in the next generation of predictive models of ecosystem dynamics.

Uptake and translocation of phytochemical 2-benzoxazolinone (BOA) in radish seeds and seedlings.

PubMed

Chiapusio, Geneviève; Pellissier, François; Gallet, Christiane

2004-07-01

The molecular aspects of phytochemical interactions between plants, especially the process of phytochemical translocation by the target plant, remain challenging for those studying allelopathy. 2-Benzoxazolinone (BOA) is a natural chemical produced by rye (Secale cereale) and is known to have phytotoxic effects on weed seeds and seedlings. The translocation of BOA into target plants has been poorly investigated. Therefore, the total absorption of [ring U 14C] BOA was estimated by oxidizing whole seedlings of Raphanus sativus cv. for 8 days and quantifying the radioactivity. Non-radiolabelled BOA in seedlings was also estimated by HPLC. BOA applied at 10(-3) M was readily taken up by germinated radish at a rate of 1556 nmol g(-1) FW. At these same concentrations, BOA reduced radish germination by 50% and caused a delay in radicle elongation. Exogenous BOA was responsible for the observed germination inhibition. At a concentration of 10(-5) M, BOA was taken up by germinated seeds (31 nmol g(-1) FW), but this quantity did not affect radish germination. Labelled BOA was not mineralized in the culture medium during seedling growth as no 14CO2 was recovered. Both 10(-3) and 10(-5) M BOA were translocated into radish organs, mainly into roots and cotyledons. These organs were then identified as potential physiological target sites. Cotyledons remained the target sink (44% of the total radioactivity). The kinetics of BOA uptake at 10(-3) and 10(-5) M in radish seedlings was identical: BOA accumulation was proportional to its initial concentration. A comparison between radioactivity and HPLC quantification for 10(-3) M BOA indicated that BOA (along with some metabolites) could effectively be recovered in radish organs using chromatography.

Large-scale wind disturbances promote tree diversity in a Central Amazon forest.

PubMed

Marra, Daniel Magnabosco; Chambers, Jeffrey Q; Higuchi, Niro; Trumbore, Susan E; Ribeiro, Gabriel H P M; Dos Santos, Joaquim; Negrón-Juárez, Robinson I; Reu, Björn; Wirth, Christian

2014-01-01

Canopy gaps created by wind-throw events, or blowdowns, create a complex mosaic of forest patches varying in disturbance intensity and recovery in the Central Amazon. Using field and remote sensing data, we investigated the short-term (four-year) effects of large (>2000 m(2)) blowdown gaps created during a single storm event in January 2005 near Manaus, Brazil, to study (i) how forest structure and composition vary with disturbance gradients and (ii) whether tree diversity is promoted by niche differentiation related to wind-throw events at the landscape scale. In the forest area affected by the blowdown, tree mortality ranged from 0 to 70%, and was highest on plateaus and slopes. Less impacted areas in the region affected by the blowdown had overlapping characteristics with a nearby unaffected forest in tree density (583 ± 46 trees ha(-1)) (mean ± 99% Confidence Interval) and basal area (26.7 ± 2.4 m(2) ha(-1)). Highly impacted areas had tree density and basal area as low as 120 trees ha(-1) and 14.9 m(2) ha(-1), respectively. In general, these structural measures correlated negatively with an index of tree mortality intensity derived from satellite imagery. Four years after the blowdown event, differences in size-distribution, fraction of resprouters, floristic composition and species diversity still correlated with disturbance measures such as tree mortality and gap size. Our results suggest that the gradients of wind disturbance intensity encompassed in large blowdown gaps (>2000 m(2)) promote tree diversity. Specialists for particular disturbance intensities existed along the entire gradient. The existence of species or genera taking an intermediate position between undisturbed and gap specialists led to a peak of rarefied richness and diversity at intermediate disturbance levels. A diverse set of species differing widely in requirements and recruitment strategies forms the initial post-disturbance cohort, thus lending a high resilience towards wind disturbances at the community level.

Large-Scale Wind Disturbances Promote Tree Diversity in a Central Amazon Forest

PubMed Central

Marra, Daniel Magnabosco; Chambers, Jeffrey Q.; Higuchi, Niro; Trumbore, Susan E.; Ribeiro, Gabriel H. P. M.; dos Santos, Joaquim; Negrón-Juárez, Robinson I.; Reu, Björn; Wirth, Christian

2014-01-01

Canopy gaps created by wind-throw events, or blowdowns, create a complex mosaic of forest patches varying in disturbance intensity and recovery in the Central Amazon. Using field and remote sensing data, we investigated the short-term (four-year) effects of large (>2000 m2) blowdown gaps created during a single storm event in January 2005 near Manaus, Brazil, to study (i) how forest structure and composition vary with disturbance gradients and (ii) whether tree diversity is promoted by niche differentiation related to wind-throw events at the landscape scale. In the forest area affected by the blowdown, tree mortality ranged from 0 to 70%, and was highest on plateaus and slopes. Less impacted areas in the region affected by the blowdown had overlapping characteristics with a nearby unaffected forest in tree density (583±46 trees ha−1) (mean±99% Confidence Interval) and basal area (26.7±2.4 m2 ha−1). Highly impacted areas had tree density and basal area as low as 120 trees ha−1 and 14.9 m2 ha−1, respectively. In general, these structural measures correlated negatively with an index of tree mortality intensity derived from satellite imagery. Four years after the blowdown event, differences in size-distribution, fraction of resprouters, floristic composition and species diversity still correlated with disturbance measures such as tree mortality and gap size. Our results suggest that the gradients of wind disturbance intensity encompassed in large blowdown gaps (>2000 m2) promote tree diversity. Specialists for particular disturbance intensities existed along the entire gradient. The existence of species or genera taking an intermediate position between undisturbed and gap specialists led to a peak of rarefied richness and diversity at intermediate disturbance levels. A diverse set of species differing widely in requirements and recruitment strategies forms the initial post-disturbance cohort, thus lending a high resilience towards wind disturbances at the community level. PMID:25099118

Large-Scale Wind Disturbances Promote Tree Diversity in a Central Amazon Forest

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marra, Daniel Magnabosco; Chambers, Jeffrey Q.; Higuchi, Niro

Canopy gaps created by wind-throw events, or blowdowns, create a complex mosaic of forest patches varying in disturbance intensity and recovery in the Central Amazon. Using field and remote sensing data, we investigated the short-term (four-year) effects of large (>2000 m 2) blowdown gaps created during a single storm event in January 2005 near Manaus, Brazil, to study (i) how forest structure and composition vary with disturbance gradients and (ii) whether tree diversity is promoted by niche differentiation related to wind-throw events at the landscape scale. In the forest area affected by the blowdown, tree mortality ranged from 0 tomore » 70%, and was highest on plateaus and slopes. Less impacted areas in the region affected by the blowdown had overlapping characteristics with a nearby unaffected forest in tree density (583±46 trees ha -1) (mean±99% Confidence Interval) and basal area (26.7±2.4 m 2 ha -1). Highly impacted areas had tree density and basal area as low as 120 trees ha -1 and 14.9 m 2 ha -1, respectively. In general, these structural measures correlated negatively with an index of tree mortality intensity derived from satellite imagery. Four years after the blowdown event, differences in size-distribution, fraction of resprouters, floristic composition and species diversity still correlated with disturbance measures such as tree mortality and gap size. Our results suggest that the gradients of wind disturbance intensity encompassed in large blowdown gaps (>2000 m 2) promote tree diversity. Specialists for particular disturbance intensities existed along the entire gradient. The existence of species or genera taking an intermediate position between undisturbed and gap specialists led to a peak of rarefied richness and diversity at intermediate disturbance levels. A diverse set of species differing widely in requirements and recruitment strategies forms the initial post-disturbance cohort, thus lending a high resilience towards wind disturbances at the community level.« less

Large-Scale Wind Disturbances Promote Tree Diversity in a Central Amazon Forest

DOE PAGES

Marra, Daniel Magnabosco; Chambers, Jeffrey Q.; Higuchi, Niro; ...

2014-08-06

Canopy gaps created by wind-throw events, or blowdowns, create a complex mosaic of forest patches varying in disturbance intensity and recovery in the Central Amazon. Using field and remote sensing data, we investigated the short-term (four-year) effects of large (>2000 m 2) blowdown gaps created during a single storm event in January 2005 near Manaus, Brazil, to study (i) how forest structure and composition vary with disturbance gradients and (ii) whether tree diversity is promoted by niche differentiation related to wind-throw events at the landscape scale. In the forest area affected by the blowdown, tree mortality ranged from 0 tomore » 70%, and was highest on plateaus and slopes. Less impacted areas in the region affected by the blowdown had overlapping characteristics with a nearby unaffected forest in tree density (583±46 trees ha -1) (mean±99% Confidence Interval) and basal area (26.7±2.4 m 2 ha -1). Highly impacted areas had tree density and basal area as low as 120 trees ha -1 and 14.9 m 2 ha -1, respectively. In general, these structural measures correlated negatively with an index of tree mortality intensity derived from satellite imagery. Four years after the blowdown event, differences in size-distribution, fraction of resprouters, floristic composition and species diversity still correlated with disturbance measures such as tree mortality and gap size. Our results suggest that the gradients of wind disturbance intensity encompassed in large blowdown gaps (>2000 m 2) promote tree diversity. Specialists for particular disturbance intensities existed along the entire gradient. The existence of species or genera taking an intermediate position between undisturbed and gap specialists led to a peak of rarefied richness and diversity at intermediate disturbance levels. A diverse set of species differing widely in requirements and recruitment strategies forms the initial post-disturbance cohort, thus lending a high resilience towards wind disturbances at the community level.« less

Effect of seasonal flooding cycle on litterfall production in alluvial rainforest on the middle Xingu River (Amazon basin, Brazil).

PubMed

Camargo, M; Giarrizzo, T; Jesus, A J S

2015-08-01

The assumption for this study was that litterfall in floodplain environments of the middle Xingu river follows a pattern of seasonal variation. According to this view, litterfall production (total and fractions) was estimated in four alluvial rainforest sites on the middle Xingu River over an annual cycle, and examined the effect of seasonal flooding cycle. The sites included two marginal flooded forests of insular lakes (Ilha Grande and Pimentel) and two flooded forests on the banks of the Xingu itself (Boa Esperança and Arroz Cru). Total litterfall correlated with rainfall and river levels, but whereas the leaf and fruit fractions followed this general pattern, the flower fraction presented an inverse pattern, peaking in the dry season. The litterfall patterns recorded in the present study were consistent with those recorded at other Amazonian sites, and in some other tropical ecosystems.

Lessons from the Rain Forest.

ERIC Educational Resources Information Center

Phillips, Shelley

2002-01-01

Presents a first-grade art project after students learned about the rain forest and heard the story, "The Great Kapok Tree: A Tale of the Amazon Rain Forest" (Lynn Cherry). Explains that the students created pictures of the rain forest. (CMK)

Effects of Baseplates of Orthodontic Appliances with in situ generated Silver Nanoparticles on Cariogenic Bacteria: A Randomized, Double-blind Cross-over Clinical Trial.

PubMed

Ghorbanzadeh, Roghayeh; Pourakbari, Babak; Bahador, Abbas

2015-04-01

Polymethyl-methacrylate (PMMA) is commonly used primarily for baseplates of orthodontic appliances (BOA). The activities of cariogenic bacteria in biofilm on these surfaces may contribute to dental caries, gingival inflammation and periodontal disease. The PMMA incorporated with nanoparticles of silver (NanoAg-I-PMMA) and NanoAg in situ in PMMA (NanoAg-IS-PMMA) have been shown to control the growth of cariogenic bacteria, but clinical trial of anti-cariogenic application of these novel materials in orthodontics has not been evaluated. The main aim of the study is to compare the clinical effectiveness of using NanoAg-IS-PMMA and NanoAg-I-PMMA for construction of new BOA in inhibiting the planktonic growth and biofilm formation of the cariogenic bacteria. Twenty four patients with a median age of 12.6 years (7-15) harboring Streptococcus mutans, Streptococcus sobrinus and Lactobacillus acidophilus as well as Lactobacillus casei participated in the randomized, double-blind, cross-over study. The experimental BOA, NanoAg-IS-BOA and NanoAg-I-BOA, contained 0.5% w/w NanoAg while the control BOA was standard PMMA. Antibacterial effect of NanoAg-IS-BOA and NanoAg-I-BOA was assessed against test cariogenic bacteria by planktonic and biofilm bacterial cells growth inhibition. The average levels of test cariogenic bacteria in saliva decreased about 2 to 70 fold (30.9-98.4%) compared to baseline depending on the microorganism type and test BOA. Biofilm inhibition analysis demonstrated that NanoAg-I-BOA and NanoAg-IS-BOA inhibited the biofilm of all test bacteria by 20.1 to 79.9% compared to BOA. NanoAg-IS-BOA had a strong anti-biofilm effect against S. mutans, S. sobrinus and L. casei. However, NanoAg-I-BOA showed only slight anti-biofilm effects on test bacteria. Most notably, at all period of the clinical trial, NanoAg-IS-BOA showed a higher antibacterial activity than NanoAg-I-BOA. Based on the novel data that presented here, the NanoAg-IS-BOA had strong antimicrobial activity in the planktonic phase and subsequent biofilm formation of the cariogenic bacteria. Wearing of NanoAg-IS-BOA has the potential to minimize dental plaque formation and caries during orthodontic treatment.

A long-term perspective on deforestation rates in the Brazilian Amazon

NASA Astrophysics Data System (ADS)

Velasco Gomez, M. D.; Beuchle, R.; Shimabukuro, Y.; Grecchi, R.; Simonetti, D.; Eva, H. D.; Achard, F.

2015-04-01

Monitoring tropical forest cover is central to biodiversity preservation, terrestrial carbon stocks, essential ecosystem and climate functions, and ultimately, sustainable economic development. The Amazon forest is the Earth's largest rainforest, and despite intensive studies on current deforestation rates, relatively little is known as to how these compare to historic (pre 1985) deforestation rates. We quantified land cover change between 1975 and 2014 in the so-called Arc of Deforestation of the Brazilian Amazon, covering the southern stretch of the Amazon forest and part of the Cerrado biome. We applied a consistent method that made use of data from Landsat sensors: Multispectral Scanner (MSS), Thematic Mapper (TM), Enhanced Thematic Mapper Plus (ETM+) and Operational Land Imager (OLI). We acquired suitable images from the US Geological Survey (USGS) for five epochs: 1975, 1990, 2000, 2010, and 2014. We then performed land cover analysis for each epoch using a systematic sample of 156 sites, each one covering 10 km x 10 km, located at the confluence point of integer degree latitudes and longitudes. An object-based classification of the images was performed with five land cover classes: tree cover, tree cover mosaic, other wooded land, other land cover, and water. The automatic classification results were corrected by visual interpretation, and, when available, by comparison with higher resolution imagery. Our results show a decrease of forest cover of 24.2% in the last 40 years in the Brazilian Arc of Deforestation, with an average yearly net forest cover change rate of -0.71% for the 39 years considered.

The phenology pattern of rubber trees in plantation and its impacts on rubber tree structure, water and carbon cycles

NASA Astrophysics Data System (ADS)

Liu, W.; Giambelluca, T. W.; Mudd, R. G.

2012-12-01

Commercial rubber (Hevea Brasiliensis) is originally native to the Amazon rainforest and it has become one of the important commercial crops in Mainland Southeast Asia. Similarly to some trees species in Amazon but quite distinctly from other native forests in Southeast Asia, rubber tree sheds its leaves in the middle of dry season and flushes new leaves before the onset of the wet season. Moreover, the mountane mainland Southeast Asia is heavily influenced by the monsoon climate which has most the precipitation in the wet season while almost no rainfall in the dry season. It is believed that the phenology pattern of rubber interacted with local climate would not only regulate the seasonal rubber plantation structures but also further alter the local energy and water budget. However, it is still lack of solid understandings of how the phenology patterns in terms of the leaf area index (LAI) changes of the rubber tree response to environmental drivers. The study tries to shed lights on the issue from analyses of a various types of in-situ field data combined with 3 years' tower flux measurements collected within the rubber plantations. It concludes that: 1) Both the monthly tree height increment and the monthly biomass accumulation are highly correlated with the LAI changes, which have the low rate of changes in the dry season versus the relative high rate of changes in the wet season; 2) the daily evapotranspiration (ET) of the rubber tree is very sensitive to the daily LAI changes in the dry season (R2 > 0.9); 3) the LAI changes, especially the leaf drops, are majorly determined by the accumulated precipitation in the past three months.

Tree Regeneration Under Different Land-Use Mosaics in the Brazilian Amazon's "Arc of Deforestation".

PubMed

Do Vale, Igor; Miranda, Izildinha Souza; Mitja, Danielle; Grimaldi, Michel; Nelson, Bruce Walker; Desjardins, Thierry; Costa, Luiz Gonzaga Silva

2015-08-01

We studied the tree-regeneration patterns in three distinct agricultural settlements in the Eastern Amazon to test the influence of land-use mosaics. The following questions are addressed: are the floristic structure and composition of regenerating trees affected by the various land-use types applied in the agricultural settlements? Do tree-regeneration patterns respond similarly to distinct land-use mosaics? Is there a relationship between tree regeneration and soil characteristics among the land-use types? The regeneration was inventoried at 45 sampling points in each settlement. At each sampling point, fourteen soil variables were analyzed. Nine different land-use types were considered. The floristic structure and composition of the settlements showed differences in the density of individuals and species and high species heterogeneity among the land-use types. The maximum Jaccard similarity coefficient found between land-use types was only 29%. Shade-tolerant species were the most diverse functional group in most land-use types, including pasture and annual crops, ranging from 91% of the number of species in the conserved and exploited forests of Travessão 338-S to 53% in the invaded pastures of Maçaranduba. The land-use types influenced significantly the floristic structure and composition of regenerating trees in two agricultural settlements, but not in third the settlement, which had greater forest cover. This finding demonstrates that the composition of each land-use mosaic, established by different management approaches, affects regeneration patterns. Tree regeneration was related to soil characteristics in all mosaics. Preparation of the area by burning was most likely the determining factor in the differences in soil characteristics between forests and agricultural areas.

Fatal attack on black-tufted-ear marmosets (Callithrix penicillata) by a Boa constrictor: a simultaneous assault on two juvenile monkeys.

PubMed

Teixeira, Danilo Simonini; dos Santos, Edmilson; Leal, Silvana Gomes; de Jesus, Andrea Karla; Vargas, Waldemir Paixão; Dutra, Irapuan; Barros, Marilia

2016-01-01

Here we report the first witnessed attack on a marmoset by a constrictor snake. The incident occurred mid-morning in a gallery forest within an altered landscape of the Cerrado region of central Brazil and refers to a fatal attack by a Boa constrictor on two juvenile black-tufted-ear marmosets (Callithrix penicillata) simultaneously. The snake captured both individuals at a height of ~ 4 m while a group of eight marmosets traveled through the subcanopy. The actual strike was not seen. After 2 min, the boa fell to the ground with both marmosets in its coils and proceeded to kill one animal at a time through constriction. Two adult marmosets immediately descended to where the snake held its victims on the ground and attacked it. The snake showed no apparent reaction, and after ~ 1-2 min, the adults rejoined the remaining group members that were mobbing and vocalizing from 5 to 6 m above. The group left the scene ~ 7 min after the onset of the attack and was not seen again. The snake loosened its coils 10 min after its initial strike, left the two carcasses on the ground and stayed behind a nearby tree. Thus, we are not sure if the victims were in fact ingested. This report confirms that marmosets are vulnerable to boid snakes and capable of highly organized and cooperative antipredation behavior. It also suggests that snakes pose a greater threat to callitrichids than previously thought.

Molecular systematics and historical biogeography of tree boas (Corallus spp.).

PubMed

Colston, Timothy J; Grazziotin, Felipe G; Shepard, Donald B; Vitt, Laurie J; Colli, Guarino R; Henderson, Robert W; Blair Hedges, S; Bonatto, Sandro; Zaher, Hussam; Noonan, Brice P; Burbrink, Frank T

2013-03-01

Inferring the evolutionary and biogeographic history of taxa occurring in a particular region is one way to determine the processes by which the biodiversity of that region originated. Tree boas of the genus Corallus are an ancient clade and occur throughout Central and South America and the Lesser Antilles, making it an excellent group for investigating Neotropical biogeography. Using sequenced portions of two mitochondrial and three nuclear loci for individuals of all recognized species of Corallus, we infer phylogenetic relationships, present the first molecular analysis of the phylogenetic placement of the enigmatic C. cropanii, develop a time-calibrated phylogeny, and explore the biogeographic history of the genus. We found that Corallus diversified within mainland South America, via over-water dispersals to the Lesser Antilles and Central America, and via the traditionally recognized Panamanian land bridge. Divergence time estimates reject the South American Caribbean-Track as a general biogeographic model for Corallus and implicate a role for events during the Oligocene and Miocene in diversification such as marine incursions and the uplift of the Andes. Our findings also suggest that recognition of the island endemic species, C. grenadensis and C. cookii, is questionable as they are nested within the widely distributed species, C. hortulanus. Our results highlight the importance of using widespread taxa when forming and testing biogeographic hypotheses in complex regions and further illustrate the difficulty of forming broadly applicable hypotheses regarding patterns of diversification in the Neotropical region. Copyright © 2012 Elsevier Inc. All rights reserved.

Long-term decline of the Amazon carbon sink.

PubMed

Brienen, R J W; Phillips, O L; Feldpausch, T R; Gloor, E; Baker, T R; Lloyd, J; Lopez-Gonzalez, G; Monteagudo-Mendoza, A; Malhi, Y; Lewis, S L; Vásquez Martinez, R; Alexiades, M; Álvarez Dávila, E; Alvarez-Loayza, P; Andrade, A; Aragão, L E O C; Araujo-Murakami, A; Arets, E J M M; Arroyo, L; Aymard C, G A; Bánki, O S; Baraloto, C; Barroso, J; Bonal, D; Boot, R G A; Camargo, J L C; Castilho, C V; Chama, V; Chao, K J; Chave, J; Comiskey, J A; Cornejo Valverde, F; da Costa, L; de Oliveira, E A; Di Fiore, A; Erwin, T L; Fauset, S; Forsthofer, M; Galbraith, D R; Grahame, E S; Groot, N; Hérault, B; Higuchi, N; Honorio Coronado, E N; Keeling, H; Killeen, T J; Laurance, W F; Laurance, S; Licona, J; Magnussen, W E; Marimon, B S; Marimon-Junior, B H; Mendoza, C; Neill, D A; Nogueira, E M; Núñez, P; Pallqui Camacho, N C; Parada, A; Pardo-Molina, G; Peacock, J; Peña-Claros, M; Pickavance, G C; Pitman, N C A; Poorter, L; Prieto, A; Quesada, C A; Ramírez, F; Ramírez-Angulo, H; Restrepo, Z; Roopsind, A; Rudas, A; Salomão, R P; Schwarz, M; Silva, N; Silva-Espejo, J E; Silveira, M; Stropp, J; Talbot, J; ter Steege, H; Teran-Aguilar, J; Terborgh, J; Thomas-Caesar, R; Toledo, M; Torello-Raventos, M; Umetsu, R K; van der Heijden, G M F; van der Hout, P; Guimarães Vieira, I C; Vieira, S A; Vilanova, E; Vos, V A; Zagt, R J

2015-03-19

Atmospheric carbon dioxide records indicate that the land surface has acted as a strong global carbon sink over recent decades, with a substantial fraction of this sink probably located in the tropics, particularly in the Amazon. Nevertheless, it is unclear how the terrestrial carbon sink will evolve as climate and atmospheric composition continue to change. Here we analyse the historical evolution of the biomass dynamics of the Amazon rainforest over three decades using a distributed network of 321 plots. While this analysis confirms that Amazon forests have acted as a long-term net biomass sink, we find a long-term decreasing trend of carbon accumulation. Rates of net increase in above-ground biomass declined by one-third during the past decade compared to the 1990s. This is a consequence of growth rate increases levelling off recently, while biomass mortality persistently increased throughout, leading to a shortening of carbon residence times. Potential drivers for the mortality increase include greater climate variability, and feedbacks of faster growth on mortality, resulting in shortened tree longevity. The observed decline of the Amazon sink diverges markedly from the recent increase in terrestrial carbon uptake at the global scale, and is contrary to expectations based on models.

Lidar observed seasonal variation of vertical canopy structure in the Amazon evergreen forests

NASA Astrophysics Data System (ADS)

Tang, H.; Dubayah, R.

2017-12-01

Both light and water are important environmental factors governing tree growth. Responses of tropical forests to their changes are complicated and can vary substantially across different spatial and temporal scales. Of particular interest is the dry-season greening-up of Amazon forests, a phenomenon undergoing considerable debates whether it is real or a "light illusion" caused by artifacts of passive optical remote sensing techniques. Here we analyze seasonal dynamic patterns of vertical canopy structure in the Amazon forests using lidar observations from NASA's Ice, Cloud, and and land Elevation Satellite (ICESat). We found that the net greening of canopy layer coincides with the wet-to-dry transition period, and its net browning occurs mostly at the late dry season. The understory also shows a seasonal cycle, but with an opposite variation to canopy and minimal correlation to seasonal variations in rainfall or radiation. Our results further suggest a potential interaction between canopy layers in the light regime that can optimize the growth of Amazon forests during the dry season. This light regime variability that exists in both spatial and temporal domains can better reveal the dry-season greening-up phenomenon, which appears less obvious when treating the Amazon forests as a whole.

Xylem vulnerability curves of canopy branches of mature trees from Caxiuana and Tapajos National Forests, Para, Brazil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Powell, Thomas; Moorcroft, Paul

Raw data for xylem vulnerability curves measured on upper canopy branches of mature trees from the Caxiuana and Tapajos National Forests, Para, Brazil. Tapajos samples were harvested from km67 transects, which is nearby the decommissioned throughfall-exclusion, drought-experiment plots. Caxiuana samples were harvested from trees growing in the throughfall-exclusion, drought-experiment plots. Data were collected in 2011 and 2012. Dataset includes: date of measurement, site ID, plot ID, tree ID (species, tree tag #), xylem pressure, percent loss of conductivity. Air injection method was used. Data reference: Powell et al. (2017) Differences in xylem cavitation resistance and leaf hydraulic traits explain differencesmore » in drought tolerance among mature Amazon rainforest trees. Global Change Biology.« less

Increased Frequency of Large Blowdown Formation in Years With Hotter Dry Seasons in the Northwestern Amazon

NASA Astrophysics Data System (ADS)

Rifai, S. W.; Anderson, L. O.; Bohlman, S.

2015-12-01

Blowdowns, which are large tree mortality events caused by downbursts, create large pulses of carbon emissions in the short term and alter successional dynamics and species composition of forests, thus affecting long term biogeochemical cycling of tropical forests. Changing climate, especially increasing temperatures and frequency of extreme climate events, may cause changes in the frequency of blowdowns, but there has been little spatiotemporal analysis to associate the interannual variation in the frequency of blowdowns with annual climate parameters. We mapped blowdowns greater than 25 ha using a time series of Landsat images from 1984-2012 in the northwestern Amazon to estimate the annual size distribution of these blowdowns. The difference in forest area affected by blowdowns between the years with the highest and lowest blowdown activity were on the order of 10 - 30 times greater depending on location. Spatially, we found the probability of large blowdowns to be higher in regions with higher annual rainfall. Temporally, we found a positive correlation between the probability of large blowdown events and maximum dry season air temperature (R2 = 0.1-0.46). Mean and maximum blowdown size also increased with maximum dry season air temperature. The strength of these relationships varied between scene locations which may be related to cloud cover obscuring the land surface in the satellite images, or biophysical characteristics of the sites. Potentially, elevated dry season temperatures during the transition from the dry season to the wet season (October - December) may exacerbate atmospheric instabilities, which promote downburst occurrences. Most global circulation models predict dry season air temperatures to increase 2-5 ℃ in the northwestern Amazon by 2050. Should the blowdown disturbance regime continue increasing with elevated dry season temperatures, the northwestern Amazon is likely to experience more catastrophic tree mortality events which has direct consequences for both the carbon emissions and carbon storage capacity of the northwestern Amazon.

Parallel diversifications of Cremastosperma and Mosannona (Annonaceae), tropical rainforest trees tracking Neogene upheaval of South America

PubMed Central

Maas, Paul J. M.; Melchers-Sharrott, Heleen

2018-01-01

Much of the immense present day biological diversity of Neotropical rainforests originated from the Miocene onwards, a period of geological and ecological upheaval in South America. We assess the impact of the Andean orogeny, drainage of Lake Pebas and closure of the Panama isthmus on two clades of tropical trees (Cremastosperma, ca 31 spp.; and Mosannona, ca 14 spp.; both Annonaceae). Phylogenetic inference revealed similar patterns of geographically restricted clades and molecular dating showed diversifications in the different areas occurred in parallel, with timing consistent with Andean vicariance and Central American geodispersal. Ecological niche modelling approaches show phylogenetically conserved niche differentiation, particularly within Cremastosperma. Niche similarity and recent common ancestry of Amazon and Guianan Mosannona species contrast with dissimilar niches and more distant ancestry of Amazon, Venezuelan and Guianan species of Cremastosperma, suggesting that this element of the similar patterns of disjunct distributions in the two genera is instead a biogeographic parallelism, with differing origins. The results provide further independent evidence for the importance of the Andean orogeny, the drainage of Lake Pebas, and the formation of links between South and Central America in the evolutionary history of Neotropical lowland rainforest trees. PMID:29410860

Parallel diversifications of Cremastosperma and Mosannona (Annonaceae), tropical rainforest trees tracking Neogene upheaval of South America.

PubMed

Pirie, Michael D; Maas, Paul J M; Wilschut, Rutger A; Melchers-Sharrott, Heleen; Chatrou, Lars W

2018-01-01

Much of the immense present day biological diversity of Neotropical rainforests originated from the Miocene onwards, a period of geological and ecological upheaval in South America. We assess the impact of the Andean orogeny, drainage of Lake Pebas and closure of the Panama isthmus on two clades of tropical trees ( Cremastosperma , ca 31 spp.; and Mosannona , ca 14 spp.; both Annonaceae). Phylogenetic inference revealed similar patterns of geographically restricted clades and molecular dating showed diversifications in the different areas occurred in parallel, with timing consistent with Andean vicariance and Central American geodispersal. Ecological niche modelling approaches show phylogenetically conserved niche differentiation, particularly within Cremastosperma . Niche similarity and recent common ancestry of Amazon and Guianan Mosannona species contrast with dissimilar niches and more distant ancestry of Amazon, Venezuelan and Guianan species of Cremastosperma , suggesting that this element of the similar patterns of disjunct distributions in the two genera is instead a biogeographic parallelism, with differing origins. The results provide further independent evidence for the importance of the Andean orogeny, the drainage of Lake Pebas, and the formation of links between South and Central America in the evolutionary history of Neotropical lowland rainforest trees.

Measuring Tree Properties and Responses Using Low-Cost Accelerometers

DOE PAGES

van Emmerik, Tim; Steele-Dunne, Susan; Hut, Rolf; ...

2017-05-11

Trees play a crucial role in the water, carbon and nitrogen cycle on local, regional and global scales. Understanding the exchange of momentum, heat, water, and CO 2 between trees and the atmosphere is important to assess the impact of drought, deforestation and climate change. Unfortunately, ground measurements of tree properties such as mass and canopy interception of precipitation are often expensive or difficult due to challenging environments. This paper aims to demonstrate the concept of using robust and affordable accelerometers to measure tree properties and responses. Tree sway is dependent on mass, canopy structure, drag coefficient, and wind forcing.more » By measuring tree acceleration, we can relate the tree motion to external forcing (e.g., wind, precipitation and related canopy interception) and tree physical properties (e.g., mass, elasticity). Using five months of acceleration data of 19 trees in the Brazilian Amazon, we show that the frequency spectrum of tree sway is related to mass, canopy interception of precipitation, and canopy–atmosphere turbulent exchange.« less

Measuring Tree Properties and Responses Using Low-Cost Accelerometers

DOE Office of Scientific and Technical Information (OSTI.GOV)

van Emmerik, Tim; Steele-Dunne, Susan; Hut, Rolf

Trees play a crucial role in the water, carbon and nitrogen cycle on local, regional and global scales. Understanding the exchange of momentum, heat, water, and CO 2 between trees and the atmosphere is important to assess the impact of drought, deforestation and climate change. Unfortunately, ground measurements of tree properties such as mass and canopy interception of precipitation are often expensive or difficult due to challenging environments. This paper aims to demonstrate the concept of using robust and affordable accelerometers to measure tree properties and responses. Tree sway is dependent on mass, canopy structure, drag coefficient, and wind forcing.more » By measuring tree acceleration, we can relate the tree motion to external forcing (e.g., wind, precipitation and related canopy interception) and tree physical properties (e.g., mass, elasticity). Using five months of acceleration data of 19 trees in the Brazilian Amazon, we show that the frequency spectrum of tree sway is related to mass, canopy interception of precipitation, and canopy–atmosphere turbulent exchange.« less

Measuring Tree Properties and Responses Using Low-Cost Accelerometers

PubMed Central

van Emmerik, Tim; Steele-Dunne, Susan; Hut, Rolf; Gentine, Pierre; Guerin, Marceau; Oliveira, Rafael S.; Wagner, Jim; Selker, John; van de Giesen, Nick

2017-01-01

Trees play a crucial role in the water, carbon and nitrogen cycle on local, regional and global scales. Understanding the exchange of momentum, heat, water, and CO2 between trees and the atmosphere is important to assess the impact of drought, deforestation and climate change. Unfortunately, ground measurements of tree properties such as mass and canopy interception of precipitation are often expensive or difficult due to challenging environments. This paper aims to demonstrate the concept of using robust and affordable accelerometers to measure tree properties and responses. Tree sway is dependent on mass, canopy structure, drag coefficient, and wind forcing. By measuring tree acceleration, we can relate the tree motion to external forcing (e.g., wind, precipitation and related canopy interception) and tree physical properties (e.g., mass, elasticity). Using five months of acceleration data of 19 trees in the Brazilian Amazon, we show that the frequency spectrum of tree sway is related to mass, canopy interception of precipitation, and canopy–atmosphere turbulent exchange. PMID:28492477

Ecosystem heterogeneity and diversity mitigate Amazon forest resilience to frequent extreme droughts.

PubMed

Longo, Marcos; Knox, Ryan G; Levine, Naomi M; Alves, Luciana F; Bonal, Damien; Camargo, Plinio B; Fitzjarrald, David R; Hayek, Matthew N; Restrepo-Coupe, Natalia; Saleska, Scott R; da Silva, Rodrigo; Stark, Scott C; Tapajós, Raphael P; Wiedemann, Kenia T; Zhang, Ke; Wofsy, Steven C; Moorcroft, Paul R

2018-05-22

The impact of increases in drought frequency on the Amazon forest's composition, structure and functioning remain uncertain. We used a process- and individual-based ecosystem model (ED2) to quantify the forest's vulnerability to increased drought recurrence. We generated meteorologically realistic, drier-than-observed rainfall scenarios for two Amazon forest sites, Paracou (wetter) and Tapajós (drier), to evaluate the impacts of more frequent droughts on forest biomass, structure and composition. The wet site was insensitive to the tested scenarios, whereas at the dry site biomass declined when average rainfall reduction exceeded 15%, due to high mortality of large-sized evergreen trees. Biomass losses persisted when year-long drought recurrence was shorter than 2-7 yr, depending upon soil texture and leaf phenology. From the site-level scenario results, we developed regionally applicable metrics to quantify the Amazon forest's climatological proximity to rainfall regimes likely to cause biomass loss > 20% in 50 yr according to ED2 predictions. Nearly 25% (1.8 million km 2 ) of the Amazon forests could experience frequent droughts and biomass loss if mean annual rainfall or interannual variability changed by 2σ. At least 10% of the high-emission climate projections (CMIP5/RCP8.5 models) predict critically dry regimes over 25% of the Amazon forest area by 2100. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

Phylogenomic analyses reveal novel relationships among snake families.

PubMed

Streicher, Jeffrey W; Wiens, John J

2016-07-01

Snakes are a diverse and important group of vertebrates. However, relationships among the major groups of snakes have remained highly uncertain, with recent studies hypothesizing very different (and typically weakly supported) relationships. Here, we address family-level snake relationships with new phylogenomic data from 3776 nuclear loci from ultraconserved elements (1.40million aligned base pairs, 52% missing data overall) sampled from 29 snake species that together represent almost all families, a dataset ∼100 times larger than used in previous studies. We found relatively strong support from species-tree analyses (NJst) for most relationships, including three largely novel clades: (1) a clade uniting the boas, pythons and their relatives, (2) a clade placing cylindrophiids and uropeltids with this clade, and (3) a clade uniting bolyeriids (Round Island boas) with pythonids and their relatives (xenopeltids and loxocemids). Relationships among families of advanced snakes (caenophidians) were also strongly supported. The results show the potential for phylogenomic analyses to resolve difficult groups, but also show a surprising sensitivity of the analyses to the inclusion or exclusion of outgroups. Copyright © 2016 Elsevier Inc. All rights reserved.

Modelling basin-wide variations in Amazon forest photosynthesis

NASA Astrophysics Data System (ADS)

Mercado, Lina; Lloyd, Jon; Domingues, Tomas; Fyllas, Nikolaos; Patino, Sandra; Dolman, Han; Sitch, Stephen

2010-05-01

Given the importance of Amazon rainforest in the global carbon and hydrological cycles, there is a need to use parameterized and validated ecosystem gas exchange and vegetation models for this region in order to adequately simulate present and future carbon and water balances. Recent research has found major differences in above-ground net primary productivity (ANPP), above ground biomass and tree dynamics across Amazonia. West Amazonia is more dynamic, with younger trees, higher stem growth rates and lower biomass than central and eastern Amazon (Baker et al. 2004; Malhi et al. 2004; Phillips et al. 2004). A factor of three variation in above-ground net primary productivity has been estimated across Amazonia by Malhi et al. (2004). Different hypotheses have been proposed to explain the observed spatial variability in ANPP (Malhi et al. 2004). First, due to the proximity to the Andes, sites from western Amazonia tend to have richer soils than central and eastern Amazon and therefore soil fertility could possibly be highly related to the high wood productivity found in western sites. Second, if GPP does not vary across the Amazon basin then different patterns of carbon allocation to respiration could also explain the observed ANPP gradient. However since plant growth depends on the interaction between photosynthesis, transport of assimilates, plant respiration, water relations and mineral nutrition, variations in plant gross photosynthesis (GPP) could also explain the observed variations in ANPP. In this study we investigate whether Amazon GPP can explain variations of observed ANPP. We use a sun and shade canopy gas exchange model that has been calibrated and evaluated at five rainforest sites (Mercado et al. 2009) to simulate gross primary productivity of 50 sites across the Amazon basin during the period 1980-2001. Such simulation differs from the ones performed with global vegetation models (Cox et al. 1998; Sitch et al. 2003) where i) single plant functional type parameter values are assigned and assumed invariant with environmental condition but also ii) these models use leaf N as a factor that limit photosynthesis. Instead, since leaf P may also limit photosynthesis of the tropical forest (Reich et al. 2009), we use a more specific description of photosynthetic capacity across the basin based on the model evaluation done in Mercado et al. (2009) in which canopy photosynthetic capacity is related to foliar P but also using the relationships derived between canopy photosynthesis and leaf nutrients (N and P) from measurements in tropical trees (Domingues et al.In review). A study of this kind can inform the global vegetation/climate community as to the need for variability in key model parameters in order to accurately simulate carbon fluxes across the Amazon basin. Baker, T. R., et al. 2004. Increasing biomass in Amazonian forest plots. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 359 (1443):353-365. Phillips, O. L. et al. 2004. Pattern and process in Amazon tree turnover, 1976-2001. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 359 (1443):381-407. Malhi, Y. et al. 2004. The above-ground coarse wood productivity of 104 Neotropical forest plots. Global Change Biology 10 (5):563-591. Mercado, L.M. et al. 2009. Impact of changes in diffuse radiation on the global land carbon sink. Nature 458 (7241), 1014. Cox, P. M. et al. 1998. A canopy conductance and photosynthesis model for use in a GCM land surface scheme. Journal of Hydrology 213 (1-4):79-9 Sitch, S. et al. 2003. Evaluation of ecosystem dynamics, plant geography and terrestrial carbon cycling in the LPJ dynamic global vegetation model. Global Change Biology 9 (2):161-185. Reich B. R. et al. 2009. Leaf phosphorus influences the photosynhtesis-nitrogen relation: a cross-biome analysis of 314 species. Oecologia, doi 10.1007/s00442-009-1291-3. Domingues, T. et al. In review. Co-limitation of photosynthetic capacity by nitrogen and phosphorus along a precipitation gradient in West Africa. Plant Cell and Environment.

An assessment of the impact of the pet trade on five CITES-Appendix II case studies - Boa constrictor imperator

USGS Publications Warehouse

Montgomery, Chad E.; Boback, Scott M.; Reed, Robert N.; Frazier, Julius A.

2015-01-01

Boa constrictor is a wide ranging snake species that is common in the pet trade and is currently listed in CITES Appendix II. Hog Island boas, or Cayos Cochinos boas, are a dwarf, insular race of Boa constrictor imperator endemic to the Cayos Cochinos Archipelago, Honduras. Cayos Cochinos boas are prized in the international pet trade for their light pink dorsal coloration, as well as for being much smaller and more docile than mainland boas (Porras, 1999; Russo, 2007). The boa population in the Cayos Cochinos was heavily exploited for the pet trade from 1979 to 1993, and researchers reported finding no boas on the islands during a five day herpetological survey trip in the early 1990s (Wilson and CruzDiaz, 1993), leading to the speculation that the population had been extirpated (e.g., Russo, 2007). The Cayos Cochinos Archipelago Natural Marine Monument has been managed by the Honduran Coral Reef Foundation since 1994 and prohibits removal of boas from the area. Poaching for the pet trade continues today, although at a lower level. Due to the endemic nature of this island morph of B. c. imperator it is imperative that we understand the dynamics of the populations and the ongoing threats that could negatively impact their long-term survival.

Size and frequency of natural forest disturbances and the Amazon forest carbon balance

PubMed Central

Espírito-Santo, Fernando D.B.; Gloor, Manuel; Keller, Michael; Malhi, Yadvinder; Saatchi, Sassan; Nelson, Bruce; Junior, Raimundo C. Oliveira; Pereira, Cleuton; Lloyd, Jon; Frolking, Steve; Palace, Michael; Shimabukuro, Yosio E.; Duarte, Valdete; Mendoza, Abel Monteagudo; López-González, Gabriela; Baker, Tim R.; Feldpausch, Ted R.; Brienen, Roel J.W.; Asner, Gregory P.; Boyd, Doreen S.; Phillips, Oliver L.

2014-01-01

Forest inventory studies in the Amazon indicate a large terrestrial carbon sink. However, field plots may fail to represent forest mortality processes at landscape-scales of tropical forests. Here we characterize the frequency distribution of disturbance events in natural forests from 0.01 ha to 2,651 ha size throughout Amazonia using a novel combination of forest inventory, airborne lidar and satellite remote sensing data. We find that small-scale mortality events are responsible for aboveground biomass losses of ~1.7 Pg C y−1 over the entire Amazon region. We also find that intermediate-scale disturbances account for losses of ~0.2 Pg C y−1, and that the largest-scale disturbances as a result of blow-downs only account for losses of ~0.004 Pg C y−1. Simulation of growth and mortality indicates that even when all carbon losses from intermediate and large-scale disturbances are considered, these are outweighed by the net biomass accumulation by tree growth, supporting the inference of an Amazon carbon sink. PMID:24643258

Size and frequency of natural forest disturbances and the Amazon forest carbon balance.

PubMed

Espírito-Santo, Fernando D B; Gloor, Manuel; Keller, Michael; Malhi, Yadvinder; Saatchi, Sassan; Nelson, Bruce; Junior, Raimundo C Oliveira; Pereira, Cleuton; Lloyd, Jon; Frolking, Steve; Palace, Michael; Shimabukuro, Yosio E; Duarte, Valdete; Mendoza, Abel Monteagudo; López-González, Gabriela; Baker, Tim R; Feldpausch, Ted R; Brienen, Roel J W; Asner, Gregory P; Boyd, Doreen S; Phillips, Oliver L

2014-03-18

Forest inventory studies in the Amazon indicate a large terrestrial carbon sink. However, field plots may fail to represent forest mortality processes at landscape-scales of tropical forests. Here we characterize the frequency distribution of disturbance events in natural forests from 0.01 ha to 2,651 ha size throughout Amazonia using a novel combination of forest inventory, airborne lidar and satellite remote sensing data. We find that small-scale mortality events are responsible for aboveground biomass losses of ~1.7 Pg C y(-1) over the entire Amazon region. We also find that intermediate-scale disturbances account for losses of ~0.2 Pg C y(-1), and that the largest-scale disturbances as a result of blow-downs only account for losses of ~0.004 Pg C y(-1). Simulation of growth and mortality indicates that even when all carbon losses from intermediate and large-scale disturbances are considered, these are outweighed by the net biomass accumulation by tree growth, supporting the inference of an Amazon carbon sink.

The role of immigrants in the assembly of the South American rainforest tree flora.

PubMed Central

Pennington, R Toby; Dick, Christopher W

2004-01-01

The Amazon lowland rainforest flora is conventionally viewed as comprising lineages that evolved in biogeographic isolation after the split of west Gondwana (ca. 100 Myr ago). Recent molecular phylogenies, however, identify immigrant lineages that arrived in South America during its period of oceanic isolation (ca. 100-3 Myr ago). Long-distance sweepstakes dispersal across oceans played an important and possibly predominant role. Stepping-stone migration from Africa and North America through hypothesized Late Cretaceous and Tertiary island chains may have facilitated immigration. An analysis of inventory plot data suggests that immigrant lineages comprise ca. 20% of both the species and individuals of an Amazon tree community in Ecuador. This is more than an order of magnitude higher than previous estimates. We also present data on the community-level similarity between South American and palaeotropical rainforests, and suggest that most taxonomic similarity derives from trans-oceanic dispersal, rather than a shared Gondwanan history. PMID:15519976

Projections of future meteorological drought and wet periods in the Amazon

PubMed Central

Duffy, Philip B.; Brando, Paulo; Asner, Gregory P.; Field, Christopher B.

2015-01-01

Future intensification of Amazon drought resulting from climate change may cause increased fire activity, tree mortality, and emissions of carbon to the atmosphere across large areas of Amazonia. To provide a basis for addressing these issues, we examine properties of recent and future meteorological droughts in the Amazon in 35 climate models participating in the Coupled Model Intercomparison Project Phase 5 (CMIP5). We find that the CMIP5 climate models, as a group, simulate important properties of historical meteorological droughts in the Amazon. In addition, this group of models reproduces observed relationships between Amazon precipitation and regional sea surface temperature anomalies in the tropical Pacific and the North Atlantic oceans. Assuming the Representative Concentration Pathway 8.5 scenario for future drivers of climate change, the models project increases in the frequency and geographic extent of meteorological drought in the eastern Amazon, and the opposite in the West. For the region as a whole, the CMIP5 models suggest that the area affected by mild and severe meteorological drought will nearly double and triple, respectively, by 2100. Extremes of wetness are also projected to increase after 2040. Specifically, the frequency of periods of unusual wetness and the area affected by unusual wetness are projected to increase after 2040 in the Amazon as a whole, including in locations where annual mean precipitation is projected to decrease. Our analyses suggest that continued emissions of greenhouse gases will increase the likelihood of extreme events that have been shown to alter and degrade Amazonian forests. PMID:26460046

Measuring (bio)physical tree properties using accelerometers

NASA Astrophysics Data System (ADS)

van Emmerik, Tim; Steele-Dunne, Susan; Hut, Rolf; Gentine, Pierre; Selker, John; van de Giesen, Nick

2017-04-01

Trees play a crucial role in the water, carbon and nitrogen cycle on local, regional and global scales. Understanding the exchange of heat, water, and CO2 between trees and the atmosphere is important to assess the impact of drought, deforestation and climate change. Unfortunately, ground measurements of tree dynamics are often expensive, or difficult due to challenging environments. We demonstrate the potential of measuring (bio)physical properties of trees using robust and affordable acceleration sensors. Tree sway is dependent on e.g. mass and wind energy absorption of the tree. By measuring tree acceleration we can relate the tree motion to external loads (e.g. precipitation), and tree (bio)physical properties (e.g. mass). Using five months of acceleration data of 19 trees in the Brazilian Amazon, we show that the frequency spectrum of tree sway is related to mass, precipitation, and canopy drag. This presentation aims to show the concept of using accelerometers to measure tree dynamics, and we acknowledge that the presented example applications is not an exhaustive list. Further analyses are the scope of current research, and we hope to inspire others to explore additional applications.

Conformational risk factors of brachycephalic obstructive airway syndrome (BOAS) in pugs, French bulldogs, and bulldogs

PubMed Central

Troconis, Eileen L.; Kalmar, Lajos; Price, David J.; Wright, Hattie E.; Adams, Vicki J.

2017-01-01

Extremely brachycephalic, or short-muzzled, dog breeds such as pugs, French bulldogs, and bulldogs are prone to the conformation-related respiratory disorder—brachycephalic obstructive airway syndrome (BOAS). Affected dogs present with a wide range of clinical signs from snoring and exercise intolerance, to life-threatening events such as syncope. In this study, conformational risk factors for BOAS that could potentially aid in breeding away from BOAS were sought. Six hundred and four pugs, French bulldogs, and bulldogs were included in the study. Soft tape measurements of the head and body were used and the inter-observer reproducibility was evaluated. Breed-specific models were developed to assess the associations between the conformational factors and BOAS status based on functional grading. The models were further validated by means of a BOAS index, which is an objective measurement of respiratory function using whole-body barometric plethysmography. The final models have good predictive power for discriminating BOAS (-) and BOAS (+) phenotypes indicated by the area under the curve values of >80% on the receiver operating curves. When other factors were controlled, stenotic nostrils were associated with BOAS in all three breeds; pugs and bulldogs with higher body condition scores (BCS) had a higher risk of developing BOAS. Among the standardized conformational measurements (i.e. craniofacial ratio (CFR), eye width ratio (EWR), skull index (SI), neck girth ratio (NGR), and neck length ratio (NLR)), for pugs EWR and SI, for French bulldogs NGR and NLR, and for bulldogs SI and NGR showed significant associations with BOAS status. However, the NGR in bulldogs was the only significant predictor that also had satisfactory inter-observer reproducibility. A NGR higher than 0.71 in male bulldogs was predictive of BOAS with approximately 70% sensitivity and specificity. In conclusion, stenotic nostrils, BCS, and NGR were found to be valid, easily applicable predictors for BOAS (+). PMID:28763490

Strong coupling of plant and fungal community structure across western Amazonian rainforests

PubMed Central

Peay, Kabir G; Baraloto, Christopher; Fine, Paul VA

2013-01-01

The Amazon basin harbors a diverse ecological community that has a critical role in the maintenance of the biosphere. Although plant and animal communities have received much attention, basic information is lacking for fungal or prokaryotic communities. This is despite the fact that recent ecological studies have suggested a prominent role for interactions with soil fungi in structuring the diversity and abundance of tropical rainforest trees. In this study, we characterize soil fungal communities across three major tropical forest types in the western Amazon basin (terra firme, seasonally flooded and white sand) using 454 pyrosequencing. Using these data, we examine the relationship between fungal diversity and tree species richness, and between fungal community composition and tree species composition, soil environment and spatial proximity. We find that the fungal community in these ecosystems is diverse, with high degrees of spatial variability related to forest type. We also find strong correlations between α- and β-diversity of soil fungi and trees. Both fungal and plant community β-diversity were also correlated with differences in environmental conditions. The correlation between plant and fungal richness was stronger in fungal lineages known for biotrophic strategies (for example, pathogens, mycorrhizas) compared with a lineage known primarily for saprotrophy (yeasts), suggesting that this coupling is, at least in part, due to direct plant–fungal interactions. These data provide a much-needed look at an understudied dimension of the biota in an important ecosystem and supports the hypothesis that fungal communities are involved in the regulation of tropical tree diversity. PMID:23598789

Phenological observations and tree seed characteristics in an equatorial moist forest at Trombetas, Pará State, Brazil

Treesearch

Oliver H. Knowles; John A. Parrotta

1997-01-01

Seasonal patterns of flowering and fruiting were studìed over an 18-vear period in an upland (terra firme) primary forest area near Trombetas, Pará ìn centrai Amazonìa. The study included 160 common tree taxa. While a number of specìes produced flowers and fruits during all months, distinct seasonal patterns were observed. Flowerìng peaks usually occurred during the...

Highly reactive light-dependent monoterpenes in the Amazon

NASA Astrophysics Data System (ADS)

Jardine, A. B.; Jardine, K. J.; Fuentes, J. D.; Martin, S. T.; Martins, G.; Durgante, F.; Carneiro, V.; Higuchi, N.; Manzi, A. O.; Chambers, J. Q.

2015-03-01

Despite orders of magnitude difference in atmospheric reactivity and great diversity in biological functioning, little is known about monoterpene speciation in tropical forests. Here we report vertically resolved ambient air mixing ratios for 12 monoterpenes in a central Amazon rainforest including observations of the highly reactive cis-β-ocimene (160 ppt), trans-β-ocimene (79 ppt), and terpinolene (32 ppt) which accounted for an estimated 21% of total monoterpene composition yet 55% of the upper canopy monoterpene ozonolysis rate. All 12 monoterpenes showed a mixing ratio peak in the upper canopy, with three demonstrating subcanopy peaks in 7 of 11 profiles. Leaf level emissions of highly reactive monoterpenes accounted for up to 1.9% of photosynthesis confirming light-dependent emissions across several Amazon tree genera. These results suggest that highly reactive monoterpenes play important antioxidant roles during photosynthesis in plants and serve as near-canopy sources of secondary organic aerosol precursors through atmospheric photooxidation via ozonolysis.

Genetic relationships among freshwater mussel species from fifteen Amazonian rivers and inferences on the evolution of the Hyriidae (Mollusca: Bivalvia: Unionida).

PubMed

Santos-Neto, Guilherme da Cruz; Beasley, Colin Robert; Schneider, Horacio; Pimpão, Daniel Mansur; Hoeh, Walter Randolph; Simone, Luiz Ricardo Lopes de; Tagliaro, Claudia Helena

2016-07-01

The current phylogenetic framework for the South American Hyriidae is solely based on morphological data. However, freshwater bivalve morphology is highly variable due to both genetic and environmental factors. The present study used both mitochondrial (COI and 16S) and nuclear (18S-ITS1) sequences in molecular phylogenetic analyses of nine Neotropical species of Hyriidae, collected from 15 South American rivers, and sequences of hyriids from Australia and New Zealand obtained from GenBank. The present molecular findings support traditional taxonomic proposals, based on morphology, for the South American subfamily Hyriinae, currently divided in three tribes: Hyriini, Castaliini and Rhipidodontini. Phylogenetic trees based on COI nucleotide sequences revealed at least four geographical groups of Castalia ambigua: northeast Amazon (Piriá, Tocantins and Caeté rivers), central Amazon, including C. quadrata (Amazon and Aripuanã rivers), north (Trombetas river), and C. ambigua from Peru. Genetic distances suggest that some specimens may be cryptic species. Among the Hyriini, a total evidence data set generated phylogenetic trees indicating that Paxyodon syrmatophorus and Prisodon obliquus are more closely related, followed by Triplodon corrugatus. The molecular clock, based on COI, agreed with the fossil record of Neotropical hyriids. The ancestor of both Australasian and Neotropical Hyriidae is estimated to have lived around 225million years ago. Copyright © 2016 Elsevier Inc. All rights reserved.

Analysis of Chromobacterium sp. natural isolates from different Brazilian ecosystems

PubMed Central

Lima-Bittencourt, Cláudia I; Astolfi-Filho, Spartaco; Chartone-Souza, Edmar; Santos, Fabrício R; Nascimento, Andréa MA

2007-01-01

Background Chromobacterium violaceum is a free-living bacterium able to survive under diverse environmental conditions. In this study we evaluate the genetic and physiological diversity of Chromobacterium sp. isolates from three Brazilian ecosystems: Brazilian Savannah (Cerrado), Atlantic Rain Forest and Amazon Rain Forest. We have analyzed the diversity with molecular approaches (16S rRNA gene sequences and amplified ribosomal DNA restriction analysis) and phenotypic surveys of antibiotic resistance and biochemistry profiles. Results In general, the clusters based on physiological profiles included isolates from two or more geographical locations indicating that they are not restricted to a single ecosystem. The isolates from Brazilian Savannah presented greater physiologic diversity and their biochemical profile was the most variable of all groupings. The isolates recovered from Amazon and Atlantic Rain Forests presented the most similar biochemical characteristics to the Chromobacterium violaceum ATCC 12472 strain. Clusters based on biochemical profiles were congruent with clusters obtained by the 16S rRNA gene tree. According to the phylogenetic analyses, isolates from the Amazon Rain Forest and Savannah displayed a closer relationship to the Chromobacterium violaceum ATCC 12472. Furthermore, 16S rRNA gene tree revealed a good correlation between phylogenetic clustering and geographic origin. Conclusion The physiological analyses clearly demonstrate the high biochemical versatility found in the C. violaceum genome and molecular methods allowed to detect the intra and inter-population diversity of isolates from three Brazilian ecosystems. PMID:17584942

Identification, Characterization, and In Vitro Culture of Highly Divergent Arenaviruses from Boa Constrictors and Annulated Tree Boas: Candidate Etiological Agents for Snake Inclusion Body Disease

PubMed Central

Stenglein, Mark D.; Sanders, Chris; Kistler, Amy L.; Ruby, J. Graham; Franco, Jessica Y.; Reavill, Drury R.; Dunker, Freeland; DeRisi, Joseph L.

2012-01-01

ABSTRACT Inclusion body disease (IBD) is an infectious fatal disease of snakes typified by behavioral abnormalities, wasting, and secondary infections. At a histopathological level, the disease is identified by the presence of large eosinophilic cytoplasmic inclusions in multiple tissues. To date, no virus or other pathogen has been definitively characterized or associated with the disease. Using a metagenomic approach to search for candidate etiologic agents in snakes with confirmed IBD, we identified and de novo assembled the complete genomic sequences of two viruses related to arenaviruses, and a third arenavirus-like sequence was discovered by screening an additional set of samples. A continuous boa constrictor cell line was established and used to propagate and isolate one of the viruses in culture. Viral nucleoprotein was localized and concentrated within large cytoplasmic inclusions in infected cells in culture and tissues from diseased snakes. In total, viral RNA was detected in 6/8 confirmed IBD cases and 0/18 controls. These viruses have a typical arenavirus genome organization but are highly divergent, belonging to a lineage separate from that of the Old and New World arenaviruses. Furthermore, these viruses encode envelope glycoproteins that are more similar to those of filoviruses than to those of other arenaviruses. These findings implicate these viruses as candidate etiologic agents of IBD. The presence of arenaviruses outside mammals reveals that these viruses infect an unexpectedly broad range of species and represent a new reservoir of potential human pathogens. PMID:22893382

Drought-induced changes in Amazon forest structure from repeat airborne lidar

NASA Astrophysics Data System (ADS)

Morton, D. C.; Leitold, V.; Longo, M.; Keller, M.; dos-Santos, M. N.; Scaranello, M. A., Sr.

2017-12-01

Drought events in tropical forests, including the 2015-2016 El Niño, may reduce net primary productivity and increase canopy tree mortality, thereby altering the short and long-term net carbon balance of tropical forests. Given the broad extent of drought impacts, forest inventory plots or eddy flux towers may not capture regional variability in forest response to drought. Here, we analyzed repeat airborne lidar data to evaluate canopy turnover from branch and tree fall before (2013-2014) and during (2014-2016) the recent El Niño drought in the eastern and central Brazilian Amazon. Coincident field surveys for a 16-ha subset of the lidar coverage provided complementary information to classify turnover areas by mechanism (branch, multiple branch, tree fall, multiple tree fall) and estimate the total coarse woody debris volume from canopy and understory tree mortality. Annualized rates of canopy turnover increased by 50%, on average, during the drought period in both intact and fragmented forests near Santarém, Pará. Turnover increased uniformly across all size classes, and there was limited evidence that taller trees contributed a greater proportion of turnover events in any size class in 2014-2016 compared to 2013-2014. This short-term increase in canopy turnover differs from findings in multi-year rainfall exclusion experiments that large trees were more sensitive to drought impacts. Field measurements confirmed the separability of the smallest (single branch) and largest damage classes (multiple tree falls), but single tree and multiple branch fall events generated similar coarse woody debris production and lidar-derived changes in canopy volume. Large-scale sampling possible with repeat airborne lidar data also captured strong local and regional gradients in canopy turnover. Differences in slope partially explained the north-south gradient in canopy turnover dynamics near Santarém, with larger increases in turnover on flatter terrain. Regional variability in canopy turnover in response to drought conditions highlights the need for a mechanistic representation of branch and tree fall dynamics in ecosystem models to resolve changes in net carbon balance from the increase in coarse woody debris production and reorganization of canopy light environments during drought years.

Dispersal limitation induces long-term biomass collapse in overhunted Amazonian forests.

PubMed

Peres, Carlos A; Emilio, Thaise; Schietti, Juliana; Desmoulière, Sylvain J M; Levi, Taal

2016-01-26

Tropical forests are the global cornerstone of biological diversity, and store 55% of the forest carbon stock globally, yet sustained provisioning of these forest ecosystem services may be threatened by hunting-induced extinctions of plant-animal mutualisms that maintain long-term forest dynamics. Large-bodied Atelinae primates and tapirs in particular offer nonredundant seed-dispersal services for many large-seeded Neotropical tree species, which on average have higher wood density than smaller-seeded and wind-dispersed trees. We used field data and models to project the spatial impact of hunting on large primates by ∼ 1 million rural households throughout the Brazilian Amazon. We then used a unique baseline dataset on 2,345 1-ha tree plots arrayed across the Brazilian Amazon to model changes in aboveground forest biomass under different scenarios of hunting-induced large-bodied frugivore extirpation. We project that defaunation of the most harvest-sensitive species will lead to losses in aboveground biomass of between 2.5-5.8% on average, with some losses as high as 26.5-37.8%. These findings highlight an urgent need to manage the sustainability of game hunting in both protected and unprotected tropical forests, and place full biodiversity integrity, including populations of large frugivorous vertebrates, firmly in the agenda of reducing emissions from deforestation and forest degradation (REDD+) programs.

Leaf Pressure Volume Data in Caxiuana and Tapajos National Forest, Para, Brazil (2011)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Powell, Thomas; Moorcroft, Paul

Pressure volume curve measurements on leaves of canopy trees from the from the Caxiuana and Tapajos National Forests, Para, Brazil. Tapajos samples were harvested from the km 67 forested area, which is adjacent to the decommissioned throughfall exclusion drought experimental plot. Caxiuana samples were harvested from trees growing in the throughfall exclusion plots. Data were collected in 2011. Dataset includes: date of measurement, site ID, plot ID, tree ID (species, tree tag #), leaf area, fresh weight, relative weight, leaf water potential, and leaf water loss. P-V curve parameters (turgor loss point, osmotic potential, and bulk modulus of elasticity) canmore » be found in Powell et al. (2017) Differences in xylem cavitation resistance and leaf hydraulic traits explain differences in drought tolerance among mature Amazon rainforest trees. Global Change Biology.« less

Characterization of naturalized cacao populations in Puerto Rico

USDA-ARS?s Scientific Manuscript database

Native to the headwaters of the Amazon River, cacao is an important agricultural tree crop produced in tropical regions around the world. Its raw product, the seed or ‘beans’, is the source for the multi-billion dollar chocolate industry. The USDA-ARS Tropical Agriculture Research Station in Mayag...

Trichoderma amazonicum, a new endophytic species on Hevea brasiliensis and H. guianensis from the Amazon basin

USDA-ARS?s Scientific Manuscript database

A new species of Trichoderma (teleomorph Hypocrea, Ascomycota, Sordariomycetes, Hypocreales, Hypocreaceae), T. amazonicum, endophytic on the living sapwood and leaves of Hevea spp. trees is described. Trichoderma amazonicum is distinguished from closely related species in the Harzianum clade (e.g. ...

Sequencing the Cacao Genome: Overall Strategy and SNP Discovery for Cacao Improvement.

USDA-ARS?s Scientific Manuscript database

On June 26, 2008, the United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Mars, Incorporated, and IBM announced that they are combining their scientific resources to sequence and analyze the entire genome of Theobroma cacao L., an understory tree from the Amazon basin w...

How rare is too rare to harvest? Management challenges posed by timber species occurring at low densities in the Brazilian Amazon

Treesearch

Mark Schulze; James Grogan; R. Matthew Landis; Edson Vidal

2008-01-01

Tropical forests are characterized by diverse assemblages of plant and animal species compared to temperate forests. Corollary to this general rule is that most tree species, whether valued for timber or not, occur at low densities (

Differences in xylem and leaf hydraulic traits explain differences in drought tolerance among mature Amazon rainforest trees.

PubMed

Powell, Thomas L; Wheeler, James K; de Oliveira, Alex A R; da Costa, Antonio Carlos Lola; Saleska, Scott R; Meir, Patrick; Moorcroft, Paul R

2017-10-01

Considerable uncertainty surrounds the impacts of anthropogenic climate change on the composition and structure of Amazon forests. Building upon results from two large-scale ecosystem drought experiments in the eastern Brazilian Amazon that observed increases in mortality rates among some tree species but not others, in this study we investigate the physiological traits underpinning these differential demographic responses. Xylem pressure at 50% conductivity (xylem-P 50 ), leaf turgor loss point (TLP), cellular osmotic potential (π o ), and cellular bulk modulus of elasticity (ε), all traits mechanistically linked to drought tolerance, were measured on upper canopy branches and leaves of mature trees from selected species growing at the two drought experiment sites. Each species was placed a priori into one of four plant functional type (PFT) categories: drought-tolerant versus drought-intolerant based on observed mortality rates, and subdivided into early- versus late-successional based on wood density. We tested the hypotheses that the measured traits would be significantly different between the four PFTs and that they would be spatially conserved across the two experimental sites. Xylem-P 50 , TLP, and π o , but not ε, occurred at significantly higher water potentials for the drought-intolerant PFT compared to the drought-tolerant PFT; however, there were no significant differences between the early- and late-successional PFTs. These results suggest that these three traits are important for determining drought tolerance, and are largely independent of wood density-a trait commonly associated with successional status. Differences in these physiological traits that occurred between the drought-tolerant and drought-intolerant PFTs were conserved between the two research sites, even though they had different soil types and dry-season lengths. This more detailed understanding of how xylem and leaf hydraulic traits vary between co-occuring drought-tolerant and drought-intolerant tropical tree species promises to facilitate a much-needed improvement in the representation of plant hydraulics within terrestrial ecosystem and biosphere models, which will enhance our ability to make robust predictions of how future changes in climate will affect tropical forests. © 2017 John Wiley & Sons Ltd.

Identification of Burkholderia mallei and Burkholderia pseudomallei adhesins for human respiratory epithelial cells.

PubMed

Balder, Rachel; Lipski, Serena; Lazarus, John J; Grose, William; Wooten, Ronald M; Hogan, Robert J; Woods, Donald E; Lafontaine, Eric R

2010-09-28

Burkholderia pseudomallei and Burkholderia mallei cause the diseases melioidosis and glanders, respectively. A well-studied aspect of pathogenesis by these closely-related bacteria is their ability to invade and multiply within eukaryotic cells. In contrast, the means by which B. pseudomallei and B. mallei adhere to cells are poorly defined. The purpose of this study was to identify adherence factors expressed by these organisms. Comparative sequence analyses identified a gene product in the published genome of B. mallei strain ATCC23344 (locus # BMAA0649) that resembles the well-characterized Yersinia enterocolitica autotransporter adhesin YadA. The gene encoding this B. mallei protein, designated boaA, was expressed in Escherichia coli and shown to significantly increase adherence to human epithelial cell lines, specifically HEp2 (laryngeal cells) and A549 (type II pneumocytes), as well as to cultures of normal human bronchial epithelium (NHBE). Consistent with these findings, disruption of the boaA gene in B. mallei ATCC23344 reduced adherence to all three cell types by ~50%. The genomes of the B. pseudomallei strains K96243 and DD503 were also found to contain boaA and inactivation of the gene in DD503 considerably decreased binding to monolayers of HEp2 and A549 cells and to NHBE cultures.A second YadA-like gene product highly similar to BoaA (65% identity) was identified in the published genomic sequence of B. pseudomallei strain K96243 (locus # BPSL1705). The gene specifying this protein, termed boaB, appears to be B. pseudomallei-specific. Quantitative attachment assays demonstrated that recombinant E. coli expressing BoaB displayed greater binding to A549 pneumocytes, HEp2 cells and NHBE cultures. Moreover, a boaB mutant of B. pseudomallei DD503 showed decreased adherence to these respiratory cells. Additionally, a B. pseudomallei strain lacking expression of both boaA and boaB was impaired in its ability to thrive inside J774A.1 murine macrophages, suggesting a possible role for these proteins in survival within professional phagocytic cells. The boaA and boaB genes specify adhesins that mediate adherence to epithelial cells of the human respiratory tract. The boaA gene product is shared by B. pseudomallei and B. mallei whereas BoaB appears to be a B. pseudomallei-specific adherence factor.

Repeat-Pass Multi-Temporal Interferometric SAR Coherence Variations with Amazon Floodplain and Lake Habitats

NASA Astrophysics Data System (ADS)

Jung, H.; Alsdorf, D.

2006-12-01

Monitoring discharge in the main channels of rivers and upland tributaries as well as storage changes in floodplain lakes is necessary for understanding flooding hazards, methane production, sediment transport, and nutrient exchange. Interferometric processing of synthetic aperture radar (SAR) data may enable hydrologists to detect environmental and ecological changes in hydrological systems over space and time. An aim of our experiments is to characterize interferometric SAR coherence variations that occur in Amazon aquatic habitats. We analyze coherence variations in JERS-1 data at three central Amazon sites; Lake Balbina, the Cabaliana floodplain, and the confluence of the Purus and Amazon rivers. Because radar pulse interactions with inundated vegetation typically follow a double-bounce travel path which returns energy to the antenna, coherence will vary with vegetation type, physical baseline, and temporal baseline. Balbina's vegetation consists mostly of forest and inundated trunks of dead, leafless trees as opposed to Cabaliana and Amazon- Purus (dominated by flooded forests), thus it serves to isolate the vegetation signal. Coherence variations with baselines were determined from 253 interferograms at Balbina, 210 at Calbaliana, and 153 at Purus. The average temporal and perpendicular baselines (mean std.) are 574 394 days and 1708 1159 m at Balbina, 637 435 days and 1381 981 m at Cabaliana, and 587 425 days and 1430 964 m at Purus. Balbina has a stronger coherence than either Cabaliana or Amazon-Purus. With results of Mann-Whitney statistical tests, Balbina has a difference between terre-firme and flooded coherence values plotted with perpendicular baseline but Cabaliana and Amazon-Purus do not show this difference. Balbina has a linearly decreasing trend in coherence plotted with temporal baseline whereas Cabaliana and Amazon-Purus have a steep drop-off, non- linear change. A strong annual periodicity is evident on power spectrums of the coherence values for Cabaliana and Amazon-Purus, but not in Balbina and is likely an indicator of the annual Amazon flood wave. Each ecological habitat is delineated in the Balbina coherence values plotted with temporal baseline, but only during high water and time-periods less than 2 years is such delineation visible in the Cabaliana and Amazon-Purus regions. Taken together, these observations suggest terre-firme does not have a seasonal variation whereas flooded areas vary with the season.

Further comments on oral transmission of Chagas' disease in Brazil: epidemiology, geographical distribution and viability of the infective parasite.

PubMed

Benchimol-Barbosa, Paulo R

2010-05-28

In 2006, Brazilian government received the international certificate of interruption of the vectorial transmission of Chagas' disease. However, outbreaks reported in Brazilian Amazon rainforest bear a regular occurrence and represents a relevant regional epidemiological gauge. The wild life cycle of the Chagas' disease transmission (i.e., triatomine-marsupial cycle) is present outside the previously reported endemic belt, ubiquitously, as infective triatomines can be demonstrated in Palm trees widespread all over the Amazon rainforest. As humans invade the rainforest, one is incidentally caught up and further becomes' an active part of American trypanosomiasis wild life cycle. Copyright 2008 Elsevier Ireland Ltd. All rights reserved.

Whole-Body Barometric Plethysmography Characterizes Upper Airway Obstruction in 3 Brachycephalic Breeds of Dogs.

PubMed

Liu, N-C; Adams, V J; Kalmar, L; Ladlow, J F; Sargan, D R

2016-05-01

A novel test using whole-body barometric plethysmography (WBBP) was developed recently to diagnose brachycephalic obstructive airway syndrome (BOAS) in unsedated French bulldogs. The hypotheses of this study were: (1) respiratory characteristics are different between healthy nonbrachycephalic dogs and brachycephalic dogs; and among pugs, French bulldogs, and bulldogs; and (2) obesity and stenotic nares are risk factors for BOAS. The main objective was to establish a diagnostic test for BOAS in these 3 breeds. A total of 266 brachycephalic dogs (100 pugs, 100 French bulldogs, and 66 bulldogs) and 28 nonbrachycephalic dogs. Prospective study. Exercise tolerance tests with respiratory functional grading, and WBBP were performed on all dogs. Data from WBBP were associated with functional grades to train quadratic discriminant analysis tools to assign dogs to BOAS+ and BOAS- groups. A BOAS index (0-100%) was calculated for each dog. Receiver operating characteristic (ROC) curves were used to evaluate classification ability. Minute volume was decreased significantly in asymptomatic pugs (P = .009), French bulldogs (P = .026), and bulldogs (P < .0001) when compared to nonbrachycephalic controls. Respiratory characteristics were different among breeds and affected dogs had a significant increase in trace variation. The BOAS index predicted BOAS status for each breed with 94-97% (95% confidence interval [CI], 88.9-100%) accuracy (area under the ROC curve). Both obesity (P = .04) and stenotic nares (P = .004) were significantly associated with BOAS. The WBBP can be used as a clinical tool to diagnose BOAS noninvasively and objectively. Copyright © 2016 The Authors. Journal of Veterinary Internal Medicine published by Wiley Periodicals, Inc. on behalf of the American College of Veterinary Internal Medicine.

BOA detoxification of four summer weeds during germination and seedling growth.

PubMed

Schulz, Margot; Marocco, Adriano; Tabaglio, Vincenzo

2012-07-01

A recent greenhouse study revealed a significant reduction of germination and growth of redroot pigweed (Amaranthus retroflexus) and common purslane (Portulaca oleracea) by rye mulch, whereas velvetleaf (Abutilon theophrasti) and common lambsquarters (Chenopodium album) were not suppressed. Since BOA detoxification by metabolic alteration may influence the relation between the benzoxazinoid content of the soil mulch and weed suppression, we tested the dynamics in BOA detoxification in different plant organs of three and 10-day-old seedlings of four warm season weeds incubated with five BOA concentrations (4, 20, 40, 80, and 200 μmol g(-1) fresh weight). In addition, germination and length of 3-day-old seedlings were measured after exposure to 0, 0.3, 1.5, 3, 6, and 15 μmol BOA. Finally, we tested the influence of the MDR translocator inhibitors verapamil, nifedipine, and the GST inhibitor ethycrynic acid on BOA accumulation and detoxification activity. Due to BOA-detoxification, all weeds were able to grow in environments with low BOA contents. At higher contents, Abutilon theophrasti and Chenopodium album had a better chance to survive because of highly active mechanisms that avoided the uptake of BOA (A. theophrasti) and of efficient detoxification activities in youngest seedlings (C. album). The interpretation of all of the data gave the following sequence of increasing sensitivity: A. theophrasti < C. album < P. oleracea ≤ A. retroflexus. The results were in agreement with recent findings of the suppression of these weeds by rye mulches and their benzoxazinoid contents. Our studies demonstrate for the first time that the detoxification of BOA influences the survival of certain weeds in environments enriched with this allelochemical. Therefore, detoxification processes affect the potential for weed suppression by soil allelochemicals in sustainable weed management.

Amazon forest structure generates diurnal and seasonal variability in light utilization

Treesearch

Douglas C. Morton; Jeremy Rubio; Bruce D. Cook; Jean-Philippe Gastellu-Etchegorry; Marcos Longo; Hyeungu Choi; Maria Hunter; Michael Keller

2016-01-01

The complex three-dimensional (3-D) structure of tropical forests generates a diversity of light environments for canopy and understory trees. Understanding diurnal and seasonal changes in light availability is critical for interpreting measurements of net ecosystem exchange and improving ecosystem models. Here, we used the Discrete Anisotropic Radiative Transfer (DART...

Highly reactive light-dependent monoterpenes in the Amazon

DOE PAGES

Jardine, A. B.; Jardine, K. J.; Fuentes, J. D.; ...

2015-03-06

Despite orders of magnitude difference in atmospheric reactivity and great diversity in biological functioning, little is known about monoterpene speciation in tropical forests. Here we report vertically resolved ambient air mixing ratios for 12 monoterpenes in a central Amazon rainforest including observations of the highly reactive cis-β-ocimene (160 ppt), trans-β-ocimene (79 ppt), and terpinolene (32 ppt) which accounted for an estimated 21% of total monoterpene composition yet 55% of the upper canopy monoterpene ozonolysis rate. All 12 monoterpenes showed a mixing ratio peak in the upper canopy, with three demonstrating subcanopy peaks in 7 of 11 profiles. Leaf level emissionsmore » of highly reactive monoterpenes accounted for up to 1.9% of photosynthesis confirming light-dependent emissions across several Amazon tree genera. These results suggest that highly reactive monoterpenes play important antioxidant roles during photosynthesis in plants and serve as near-canopy sources of secondary organic aerosol precursors through atmospheric photooxidation via ozonolysis.« less

Implication of Forest-Savanna Dynamics on Biomass and Carbon Stock: Effectiveness of an Amazonian Ecological Station

NASA Astrophysics Data System (ADS)

Couto-Santos, F. R.; Luizao, F. J.

2014-12-01

The forests-savanna advancement/retraction process seems to play an important role in the global carbon cycle and in the climate-vegetation balance maintenance in the Amazon. To contribute with long term carbon dynamics and assess effectiveness of a protected area in reduce carbon emissions in Brazilian Amazon transitional areas, variations in forest-savanna mosaics biomass and carbon stock within Maraca Ecological Station (MES), Roraima/Brazil, and its outskirts non-protected areas were compared. Composite surface soil samples and indirect methods based on regression models were used to estimate aboveground tree biomass accumulation and assess vegetation and soil carbon stock along eleven 0.6 ha transects perpendicular to the forest-savanna limits. Aboveground biomass and carbon accumulation were influenced by vegetation structure, showing higher values within protected area, with great contribution of trees above 40 cm in diameter. In the savanna environments of protected areas, a higher tree density and carbon stock up to 30 m from the border confirmed a forest encroachment. This pointed that MES acts as carbon sink, even under variations in soil fertility gradient, with a potential increase of the total carbon stock from 9 to 150 Mg C ha-1. Under 20 years of fire and disturbance management, the results indicated the effectiveness of this protected area to reduce carbon emissions and mitigate greenhouse and climate change effects in a forest-savanna transitional area in Brazilian Northern Amazon. The contribution of this study in understanding rates and reasons for biomass and carbon variation, under different management strategies, should be considered the first approximation to assist policies of reducing emissions from deforestation and forest degradation (REDD) from underresearched Amazonian ecotone; despite further efforts in this direction are still needed. FINANCIAL SUPPORT: Boticário Group Foundation (Fundação Grupo Boticário); National Council for Scientific and Technological Development (CNPq); Minas Gerais State Research Foundation (FAPEMIG).

Markedly divergent estimates of Amazon forest carbon density from ground plots and satellites.

PubMed

Mitchard, Edward T A; Feldpausch, Ted R; Brienen, Roel J W; Lopez-Gonzalez, Gabriela; Monteagudo, Abel; Baker, Timothy R; Lewis, Simon L; Lloyd, Jon; Quesada, Carlos A; Gloor, Manuel; Ter Steege, Hans; Meir, Patrick; Alvarez, Esteban; Araujo-Murakami, Alejandro; Aragão, Luiz E O C; Arroyo, Luzmila; Aymard, Gerardo; Banki, Olaf; Bonal, Damien; Brown, Sandra; Brown, Foster I; Cerón, Carlos E; Chama Moscoso, Victor; Chave, Jerome; Comiskey, James A; Cornejo, Fernando; Corrales Medina, Massiel; Da Costa, Lola; Costa, Flavia R C; Di Fiore, Anthony; Domingues, Tomas F; Erwin, Terry L; Frederickson, Todd; Higuchi, Niro; Honorio Coronado, Euridice N; Killeen, Tim J; Laurance, William F; Levis, Carolina; Magnusson, William E; Marimon, Beatriz S; Marimon Junior, Ben Hur; Mendoza Polo, Irina; Mishra, Piyush; Nascimento, Marcelo T; Neill, David; Núñez Vargas, Mario P; Palacios, Walter A; Parada, Alexander; Pardo Molina, Guido; Peña-Claros, Marielos; Pitman, Nigel; Peres, Carlos A; Poorter, Lourens; Prieto, Adriana; Ramirez-Angulo, Hirma; Restrepo Correa, Zorayda; Roopsind, Anand; Roucoux, Katherine H; Rudas, Agustin; Salomão, Rafael P; Schietti, Juliana; Silveira, Marcos; de Souza, Priscila F; Steininger, Marc K; Stropp, Juliana; Terborgh, John; Thomas, Raquel; Toledo, Marisol; Torres-Lezama, Armando; van Andel, Tinde R; van der Heijden, Geertje M F; Vieira, Ima C G; Vieira, Simone; Vilanova-Torre, Emilio; Vos, Vincent A; Wang, Ophelia; Zartman, Charles E; Malhi, Yadvinder; Phillips, Oliver L

2014-08-01

The accurate mapping of forest carbon stocks is essential for understanding the global carbon cycle, for assessing emissions from deforestation, and for rational land-use planning. Remote sensing (RS) is currently the key tool for this purpose, but RS does not estimate vegetation biomass directly, and thus may miss significant spatial variations in forest structure. We test the stated accuracy of pantropical carbon maps using a large independent field dataset. Tropical forests of the Amazon basin. The permanent archive of the field plot data can be accessed at: http://dx.doi.org/10.5521/FORESTPLOTS.NET/2014_1. Two recent pantropical RS maps of vegetation carbon are compared to a unique ground-plot dataset, involving tree measurements in 413 large inventory plots located in nine countries. The RS maps were compared directly to field plots, and kriging of the field data was used to allow area-based comparisons. The two RS carbon maps fail to capture the main gradient in Amazon forest carbon detected using 413 ground plots, from the densely wooded tall forests of the north-east, to the light-wooded, shorter forests of the south-west. The differences between plots and RS maps far exceed the uncertainties given in these studies, with whole regions over- or under-estimated by > 25%, whereas regional uncertainties for the maps were reported to be < 5%. Pantropical biomass maps are widely used by governments and by projects aiming to reduce deforestation using carbon offsets, but may have significant regional biases. Carbon-mapping techniques must be revised to account for the known ecological variation in tree wood density and allometry to create maps suitable for carbon accounting. The use of single relationships between tree canopy height and above-ground biomass inevitably yields large, spatially correlated errors. This presents a significant challenge to both the forest conservation and remote sensing communities, because neither wood density nor species assemblages can be reliably mapped from space.

Markedly divergent estimates of Amazon forest carbon density from ground plots and satellites

PubMed Central

Mitchard, Edward T A; Feldpausch, Ted R; Brienen, Roel J W; Lopez-Gonzalez, Gabriela; Monteagudo, Abel; Baker, Timothy R; Lewis, Simon L; Lloyd, Jon; Quesada, Carlos A; Gloor, Manuel; ter Steege, Hans; Meir, Patrick; Alvarez, Esteban; Araujo-Murakami, Alejandro; Aragão, Luiz E O C; Arroyo, Luzmila; Aymard, Gerardo; Banki, Olaf; Bonal, Damien; Brown, Sandra; Brown, Foster I; Cerón, Carlos E; Chama Moscoso, Victor; Chave, Jerome; Comiskey, James A; Cornejo, Fernando; Corrales Medina, Massiel; Da Costa, Lola; Costa, Flavia R C; Di Fiore, Anthony; Domingues, Tomas F; Erwin, Terry L; Frederickson, Todd; Higuchi, Niro; Honorio Coronado, Euridice N; Killeen, Tim J; Laurance, William F; Levis, Carolina; Magnusson, William E; Marimon, Beatriz S; Marimon Junior, Ben Hur; Mendoza Polo, Irina; Mishra, Piyush; Nascimento, Marcelo T; Neill, David; Núñez Vargas, Mario P; Palacios, Walter A; Parada, Alexander; Pardo Molina, Guido; Peña-Claros, Marielos; Pitman, Nigel; Peres, Carlos A; Poorter, Lourens; Prieto, Adriana; Ramirez-Angulo, Hirma; Restrepo Correa, Zorayda; Roopsind, Anand; Roucoux, Katherine H; Rudas, Agustin; Salomão, Rafael P; Schietti, Juliana; Silveira, Marcos; de Souza, Priscila F; Steininger, Marc K; Stropp, Juliana; Terborgh, John; Thomas, Raquel; Toledo, Marisol; Torres-Lezama, Armando; van Andel, Tinde R; van der Heijden, Geertje M F; Vieira, Ima C G; Vieira, Simone; Vilanova-Torre, Emilio; Vos, Vincent A; Wang, Ophelia; Zartman, Charles E; Malhi, Yadvinder; Phillips, Oliver L

2014-01-01

Aim The accurate mapping of forest carbon stocks is essential for understanding the global carbon cycle, for assessing emissions from deforestation, and for rational land-use planning. Remote sensing (RS) is currently the key tool for this purpose, but RS does not estimate vegetation biomass directly, and thus may miss significant spatial variations in forest structure. We test the stated accuracy of pantropical carbon maps using a large independent field dataset. Location Tropical forests of the Amazon basin. The permanent archive of the field plot data can be accessed at: http://dx.doi.org/10.5521/FORESTPLOTS.NET/2014_1 Methods Two recent pantropical RS maps of vegetation carbon are compared to a unique ground-plot dataset, involving tree measurements in 413 large inventory plots located in nine countries. The RS maps were compared directly to field plots, and kriging of the field data was used to allow area-based comparisons. Results The two RS carbon maps fail to capture the main gradient in Amazon forest carbon detected using 413 ground plots, from the densely wooded tall forests of the north-east, to the light-wooded, shorter forests of the south-west. The differences between plots and RS maps far exceed the uncertainties given in these studies, with whole regions over- or under-estimated by > 25%, whereas regional uncertainties for the maps were reported to be < 5%. Main conclusions Pantropical biomass maps are widely used by governments and by projects aiming to reduce deforestation using carbon offsets, but may have significant regional biases. Carbon-mapping techniques must be revised to account for the known ecological variation in tree wood density and allometry to create maps suitable for carbon accounting. The use of single relationships between tree canopy height and above-ground biomass inevitably yields large, spatially correlated errors. This presents a significant challenge to both the forest conservation and remote sensing communities, because neither wood density nor species assemblages can be reliably mapped from space. PMID:26430387

Seasonal variations in the stable oxygen isotope ratio of wood cellulose reveal annual rings of trees in a Central Amazon terra firme forest.

PubMed

Ohashi, Shinta; Durgante, Flávia M; Kagawa, Akira; Kajimoto, Takuya; Trumbore, Susan E; Xu, Xiaomei; Ishizuka, Moriyoshi; Higuchi, Niro

2016-03-01

In Amazonian non-flooded forests with a moderate dry season, many trees do not form anatomically definite annual rings. Alternative indicators of annual rings, such as the oxygen (δ(18)Owc) and carbon stable isotope ratios of wood cellulose (δ(13)Cwc), have been proposed; however, their applicability in Amazonian forests remains unclear. We examined seasonal variations in the δ(18)Owc and δ(13)Cwc of three common species (Eschweilera coriacea, Iryanthera coriacea, and Protium hebetatum) in Manaus, Brazil (Central Amazon). E. coriacea was also sampled in two other regions to determine the synchronicity of the isotopic signals among different regions. The annual cyclicity of δ(18)Owc variation was cross-checked by (14)C dating. The δ(18)Owc showed distinct seasonal variations that matched the amplitude observed in the δ(18)O of precipitation, whereas seasonal δ(13)Cwc variations were less distinct in most cases. The δ(18)Owc variation patterns were similar within and between some individual trees in Manaus. However, the δ(18)Owc patterns of E. coriacea differed by region. The ages of some samples estimated from the δ(18)Owc cycles were offset from the ages estimated by (14)C dating. In the case of E. coriacea, this phenomenon suggested that missing or wedging rings may occur frequently even in well-grown individuals. Successful cross-dating may be facilitated by establishing δ(18)Owc master chronologies at both seasonal and inter-annual scales for tree species with distinct annual rings in each region.

Dispersal limitation induces long-term biomass collapse in overhunted Amazonian forests

PubMed Central

Peres, Carlos A.; Emilio, Thaise; Schietti, Juliana; Desmoulière, Sylvain J. M.; Levi, Taal

2016-01-01

Tropical forests are the global cornerstone of biological diversity, and store 55% of the forest carbon stock globally, yet sustained provisioning of these forest ecosystem services may be threatened by hunting-induced extinctions of plant–animal mutualisms that maintain long-term forest dynamics. Large-bodied Atelinae primates and tapirs in particular offer nonredundant seed-dispersal services for many large-seeded Neotropical tree species, which on average have higher wood density than smaller-seeded and wind-dispersed trees. We used field data and models to project the spatial impact of hunting on large primates by ∼1 million rural households throughout the Brazilian Amazon. We then used a unique baseline dataset on 2,345 1-ha tree plots arrayed across the Brazilian Amazon to model changes in aboveground forest biomass under different scenarios of hunting-induced large-bodied frugivore extirpation. We project that defaunation of the most harvest-sensitive species will lead to losses in aboveground biomass of between 2.5–5.8% on average, with some losses as high as 26.5–37.8%. These findings highlight an urgent need to manage the sustainability of game hunting in both protected and unprotected tropical forests, and place full biodiversity integrity, including populations of large frugivorous vertebrates, firmly in the agenda of reducing emissions from deforestation and forest degradation (REDD+) programs. PMID:26811455

Morphological and genetic diversity of camu-camu [Myrciaria dubia (Kunth) McVaugh] in the Peruvian Amazon

PubMed Central

Šmíd, Jan; Kalousová, Marie; Mandák, Bohumil; Houška, Jakub; Chládová, Anna; Pinedo, Mario

2017-01-01

Camu-camu [Myrciaria dubia (Kunth) McVaugh] is currently an important and promising fruit species grown in the Peruvian Amazon, as well as in Brazil, Colombia, and Bolivia. The species is valued for its high content of fruit-based vitamin C. Large plantations have been established only in the last two decades, and a substantial part of the production is still obtained by collecting fruits from the wild. Domestication of the species is at an early stage; most farmers cultivate the plants without any breeding, or only through a simple mass selection process. The main objective of the study was to characterize morphological and genetic variation within and among cultivated and natural populations of camu-camu in the Peruvian Amazon. In total, we sampled 13 populations: ten wild in the Iquitos region, and three cultivated in the Pucallpa region in the Peruvian Amazon. To assess the genetic diversity using seven microsatellite loci, we analyzed samples from ten individual trees per each population (n = 126). Morphological data was collected from five trees from each population (n = 65). The analysis did not reveal statistically significant differences for most of the morphological descriptors. For wild and cultivated populations, the observed heterozygosity was 0.347 and 0.404 (expected 0.516 and 0.506), and the fixation index was 0.328 and 0.200, respectively. Wild populations could be divided into two groups according to the UPGMA and STRUCTURE analysis. In cultivated populations, their approximate origin was determined. Our findings indicate a high genetic diversity among the populations, but also a high degree of inbreeding within the populations. This can be explained by either the isolation of these populations from each other or the low number of individuals in some populations. This high level of genetic diversity can be explored for the selection of superior individuals for further breeding. PMID:28658316

Morphological and genetic diversity of camu-camu [Myrciaria dubia (Kunth) McVaugh] in the Peruvian Amazon.

PubMed

Šmíd, Jan; Kalousová, Marie; Mandák, Bohumil; Houška, Jakub; Chládová, Anna; Pinedo, Mario; Lojka, Bohdan

2017-01-01

Camu-camu [Myrciaria dubia (Kunth) McVaugh] is currently an important and promising fruit species grown in the Peruvian Amazon, as well as in Brazil, Colombia, and Bolivia. The species is valued for its high content of fruit-based vitamin C. Large plantations have been established only in the last two decades, and a substantial part of the production is still obtained by collecting fruits from the wild. Domestication of the species is at an early stage; most farmers cultivate the plants without any breeding, or only through a simple mass selection process. The main objective of the study was to characterize morphological and genetic variation within and among cultivated and natural populations of camu-camu in the Peruvian Amazon. In total, we sampled 13 populations: ten wild in the Iquitos region, and three cultivated in the Pucallpa region in the Peruvian Amazon. To assess the genetic diversity using seven microsatellite loci, we analyzed samples from ten individual trees per each population (n = 126). Morphological data was collected from five trees from each population (n = 65). The analysis did not reveal statistically significant differences for most of the morphological descriptors. For wild and cultivated populations, the observed heterozygosity was 0.347 and 0.404 (expected 0.516 and 0.506), and the fixation index was 0.328 and 0.200, respectively. Wild populations could be divided into two groups according to the UPGMA and STRUCTURE analysis. In cultivated populations, their approximate origin was determined. Our findings indicate a high genetic diversity among the populations, but also a high degree of inbreeding within the populations. This can be explained by either the isolation of these populations from each other or the low number of individuals in some populations. This high level of genetic diversity can be explored for the selection of superior individuals for further breeding.

Allelochemical stress inhibits growth, leaf water relations, PSII photochemistry, non-photochemical fluorescence quenching, and heat energy dissipation in three C3 perennial species

PubMed Central

Hussain, M. Iftikhar; Reigosa, Manuel J.

2011-01-01

In this study, the effect of two allelochemicals, benzoxazolin-2(3H)-one (BOA) and cinnamic acid (CA), on different physiological and morphological characteristics of 1-month-old C3 plant species (Dactylis glomerata, Lolium perenne, and Rumex acetosa) was analysed. BOA inhibited the shoot length of D. glomerata, L. perenne, and R. acetosa by 49%, 19%, and 19% of the control. The root length of D. glomerata, L. perenne, and R. acetosa growing in the presence of 1.5 mM BOA and CA was decreased compared with the control. Both allelochemicals (BOA, CA) inhibited leaf osmotic potential (LOP) in L. perenne and D. glomerata. In L. perenne, Fv/Fm decreased after treatment with BOA (1.5 mM) while CA (1.5 mM) also significantly reduced Fv/Fm in L. perenne. Both allelochemicals decreased ΦPSII in D. glomerata and L. perenne within 24 h of treatment, while in R. acetosa, ΦPSII levels decreased by 72 h following treatment with BOA and CA. There was a decrease in qP and NPQ on the first, fourth, fifth, and sixth days after treatment with BOA in D. glomerata, while both allelochemicals reduced the qP level in R. acetosa. There was a gradual decrease in the fraction of light absorbed by PSII allocated to PSII photochemistry (P) in R. acetosa treated with BOA and CA. The P values in D. glomerata were reduced by both allelochemicals and the portion of absorbed photon energy that was thermally dissipated (D) in D. glomerata and L. perenne was decreased by BOA and CA. Photon energy absorbed by PSII antennae and trapped by ‘closed’ PSII reaction centres (E) was decreased after CA exposure in D. glomerata. BOA and CA (1.5 mM concentration) decreased the leaf protein contents in all three perennial species. This study provides new understanding of the physiological and biochemical mechanisms of action of BOA and CA in one perennial dicotyledon and two perennial grasses. The acquisition of such knowledge may ultimately provide a rational and scientific basis for the design of safe and effective herbicides. PMID:21659663

Wood anatomy of the neotropical Sapotaceae. XVIII, Gomphiluma

Treesearch

B.F. Kukachka

1980-01-01

As now constituted, Gomphiluma consists of two species of small trees limited to the Brazilian Amazon. Formerly submerged in the large genus Pouteria, Gomphiluma was reinstated to generic status by Aubréville in 1961. The pale brown wood of moderate density is quite unlike that of Pouteria and appears more nearly allied with certain species of Micropholis.

A SNP assay for genotyping Theobroma cacao suitable for use under field conditions

USDA-ARS?s Scientific Manuscript database

The tropical tree crop Theobroma cacao L. is grown commercially for its beans, which are used in the production of cocoa butter and chocolate. Although the upper Amazon region of South America is the center of origin for cacao, 70% of the world’s supply of cocoa beans currently comes from small far...

Optimization of a SNP assay for Genotyping Theobroma cacao under field conditions

USDA-ARS?s Scientific Manuscript database

The tropical tree crop Theobroma cacao L. is grown commercially for its beans, which are used in the production of cocoa butter and chocolate. Although the upper Amazon region is the center of origin for cacao, 70% of the world’s supply of cacao beans currently comes from small farms in West Africa...

Bioactivities of acai (Euterpe precatoria mart.) fruit pulp, superior antioxidant and anti-inflammatory properties to Euterpe oleracea mart

USDA-ARS?s Scientific Manuscript database

There are two predominant palm tree species producing edible fruit known as "acai" found widely dispersed through the Amazon: Euterpe oleracea Mart. and Euterpe precatoria Mart. They differ from each other in terms of how the plants grow and phytochemical composition. E. oleracea (EO) has received c...

Selection harvests in Amazonian rainforests: long-term impacts on soil properties

Treesearch

K.L. McNabb; M.S. Miller; B.G. Lockaby; B.J. Stokes; R.G. Clawson; John A. Stanturf; J.N.M. Silva

1997-01-01

Surface soil properties were compared among disturbance classes associated with a single-tree selection harvest study installed in 1979 in the Brazilian Amazon. Response variables included pH, total N, total organic C, extractable P, exchangeable K, Ca, Mg, and bulk density. In general, concentrations of all elements displayed residual effects 16 years after harvests...

Demographic threats to the sustainability of Brazil nut exploitation.

PubMed

Peres, Carlos A; Baider, Claudia; Zuidema, Pieter A; Wadt, Lúcia H O; Kainer, Karen A; Gomes-Silva, Daisy A P; Salomão, Rafael P; Simões, Luciana L; Franciosi, Eduardo R N; Cornejo Valverde, Fernando; Gribel, Rogério; Shepard, Glenn H; Kanashiro, Milton; Coventry, Peter; Yu, Douglas W; Watkinson, Andrew R; Freckleton, Robert P

2003-12-19

A comparative analysis of 23 populations of the Brazil nut tree (Bertholletia excelsa) across the Brazilian, Peruvian, and Bolivian Amazon shows that the history and intensity of Brazil nut exploitation are major determinants of population size structure. Populations subjected to persistent levels of harvest lack juvenile trees less than 60 centimeters in diameter at breast height; only populations with a history of either light or recent exploitation contain large numbers of juvenile trees. A harvesting model confirms that intensive exploitation levels over the past century are such that juvenile recruitment is insufficient to maintain populations over the long term. Without management, intensively harvested populations will succumb to a process of senescence and demographic collapse, threatening this cornerstone of the Amazonian extractive economy.

Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support.

PubMed

Wilcox, Thomas P; Zwickl, Derrick J; Heath, Tracy A; Hillis, David M

2002-11-01

Four New World genera of dwarf boas (Exiliboa, Trachyboa, Tropidophis, and Ungaliophis) have been placed by many systematists in a single group (traditionally called Tropidophiidae). However, the monophyly of this group has been questioned in several studies. Moreover, the overall relationships among basal snake lineages, including the placement of the dwarf boas, are poorly understood. We obtained mtDNA sequence data for 12S, 16S, and intervening tRNA-val genes from 23 species of snakes representing most major snake lineages, including all four genera of New World dwarf boas. We then examined the phylogenetic position of these species by estimating the phylogeny of the basal snakes. Our phylogenetic analysis suggests that New World dwarf boas are not monophyletic. Instead, we find Exiliboa and Ungaliophis to be most closely related to sand boas (Erycinae), boas (Boinae), and advanced snakes (Caenophidea), whereas Tropidophis and Trachyboa form an independent clade that separated relatively early in snake radiation. Our estimate of snake phylogeny differs significantly in other ways from some previous estimates of snake phylogeny. For instance, pythons do not cluster with boas and sand boas, but instead show a strong relationship with Loxocemus and Xenopeltis. Additionally, uropeltids cluster strongly with Cylindrophis, and together are embedded in what has previously been considered the macrostomatan radiation. These relationships are supported by both bootstrapping (parametric and nonparametric approaches) and Bayesian analysis, although Bayesian support values are consistently higher than those obtained from nonparametric bootstrapping. Simulations show that Bayesian support values represent much better estimates of phylogenetic accuracy than do nonparametric bootstrap support values, at least under the conditions of our study. Copyright 2002 Elsevier Science (USA)

GuiaTreeKey, a multi-access electronic key to identify tree genera in French Guiana.

PubMed

Engel, Julien; Brousseau, Louise; Baraloto, Christopher

2016-01-01

The tropical rainforest of Amazonia is one of the most species-rich ecosystems on earth, with an estimated 16000 tree species. Due to this high diversity, botanical identification of trees in the Amazon is difficult, even to genus, often requiring the assistance of parataxonomists or taxonomic specialists. Advances in informatics tools offer a promising opportunity to develop user-friendly electronic keys to improve Amazonian tree identification. Here, we introduce an original multi-access electronic key for the identification of 389 tree genera occurring in French Guiana terra-firme forests, based on a set of 79 morphological characters related to vegetative, floral and fruit characters. Its purpose is to help Amazonian tree identification and to support the dissemination of botanical knowledge to non-specialists, including forest workers, students and researchers from other scientific disciplines. The electronic key is accessible with the free access software Xper ², and the database is publicly available on figshare: https://figshare.com/s/75d890b7d707e0ffc9bf (doi: 10.6084/m9.figshare.2682550).

Individual tree detection in intact forest and degraded forest areas in the north region of Mato Grosso State, Brazilian Amazon

NASA Astrophysics Data System (ADS)

Santos, E. G.; Jorge, A.; Shimabukuro, Y. E.; Gasparini, K.

2017-12-01

The State of Mato Grosso - MT has the second largest area with degraded forest among the states of the Brazilian Legal Amazon. Land use and land cover change processes that occur in this region cause the loss of forest biomass, releasing greenhouse gases that contribute to the increase of temperature on earth. These degraded forest areas lose biomass according to the intensity and magnitude of the degradation type. The estimate of forest biomass, commonly performed by forest inventory through sample plots, shows high variance in degraded forest areas. Due to this variance and complexity of tropical forests, the aim of this work was to estimate forest biomass using LiDAR point clouds in three distinct forest areas: one degraded by fire, another by selective logging and one area of intact forest. The approach applied in these areas was the Individual Tree Detection (ITD). To isolate the trees, we generated Canopy Height Models (CHM) images, which are obtained by subtracting the Digital Elevation Model (MDE) and the Digital Terrain Model (MDT), created by the cloud of LiDAR points. The trees in the CHM images are isolated by an algorithm provided by the Quantitative Ecology research group at the School of Forestry at Northern Arizona University (SILVA, 2015). With these points, metrics were calculated for some areas, which were used in the model of biomass estimation. The methodology used in this work was expected to reduce the error in biomass estimate in the study area. The cloud points of the most representative trees were analyzed, and thus field data was correlated with the individual trees found by the proposed algorithm. In a pilot study, the proposed methodology was applied generating the individual tree metrics: total height and area of the crown. When correlating 339 isolated trees, an unsatisfactory R² was obtained, as heights found by the algorithm were lower than those obtained in the field, with an average difference of 2.43 m. This shows that the algorithm used to isolate trees in temperate areas did not obtained satisfactory results in the tropical forest of Mato Grosso State. Due to this, in future works two algorithms, one developed by Dalponte et al. (2015) and another by Li et al. (2012) will be used.

The steady-state mosaic of disturbance and succession across an old-growth Central Amazon forest landscape.

PubMed

Chambers, Jeffrey Q; Negron-Juarez, Robinson I; Marra, Daniel Magnabosco; Di Vittorio, Alan; Tews, Joerg; Roberts, Dar; Ribeiro, Gabriel H P M; Trumbore, Susan E; Higuchi, Niro

2013-03-05

Old-growth forest ecosystems comprise a mosaic of patches in different successional stages, with the fraction of the landscape in any particular state relatively constant over large temporal and spatial scales. The size distribution and return frequency of disturbance events, and subsequent recovery processes, determine to a large extent the spatial scale over which this old-growth steady state develops. Here, we characterize this mosaic for a Central Amazon forest by integrating field plot data, remote sensing disturbance probability distribution functions, and individual-based simulation modeling. Results demonstrate that a steady state of patches of varying successional age occurs over a relatively large spatial scale, with important implications for detecting temporal trends on plots that sample a small fraction of the landscape. Long highly significant stochastic runs averaging 1.0 Mg biomass⋅ha(-1)⋅y(-1) were often punctuated by episodic disturbance events, resulting in a sawtooth time series of hectare-scale tree biomass. To maximize the detection of temporal trends for this Central Amazon site (e.g., driven by CO2 fertilization), plots larger than 10 ha would provide the greatest sensitivity. A model-based analysis of fractional mortality across all gap sizes demonstrated that 9.1-16.9% of tree mortality was missing from plot-based approaches, underscoring the need to combine plot and remote-sensing methods for estimating net landscape carbon balance. Old-growth tropical forests can exhibit complex large-scale structure driven by disturbance and recovery cycles, with ecosystem and community attributes of hectare-scale plots exhibiting continuous dynamic departures from a steady-state condition.

The contribution of edaphic heterogeneity to the evolution and diversity of Burseraceae trees in the western Amazon.

PubMed

Fine, Paul V A; Daly, Douglas C; Villa Muñoz, Gorky; Mesones, Italo; Cameron, Kenneth M

2005-07-01

Environmental heterogeneity in the tropics is thought to lead to specialization in plants and thereby contribute to the diversity of the tropical flora. We examine this idea with data on the habitat specificity of 35 western Amazonian species from the genera Protium, Crepidospermum, and Tetragastris in the monophyletic tribe Protieae (Burseraceae) mapped on a molecular-based phylogeny. We surveyed three edaphic habitats that occur throughout terra firme Amazonia: white-sand, clay, and terrace soils in eight forests across more than 2000 km in the western Amazon. Twenty-six of the 35 species were found to be associated with only one of three soil types, and no species was associated with all three habitats; this pattern of edaphic specialization was consistent across the entire region. Habitat association mapped onto the phylogenetic tree shows association with terrace soils to be the probable ancestral state in the group, with subsequent speciation events onto clay and white-sand soils. The repeated gain of clay association within the clade likely coincides with the emergence of large areas of clay soils in the Miocene deposited during the Andean uplift. Character optimizations revealed that soil association was not phylogenetically clustered for white-sand and clay specialists, suggesting repeated independent evolution of soil specificity is common within the Protieae. This phylogenetic analysis also showed that multiple cases of putative sister taxa with parapatric distributions differ in their edaphic associations, suggesting that edaphic heterogeneity was an important driver of speciation in the Protieae in the Amazon basin.

Forest Understory Fire in the Brazilian Amazon in ENSO and Non-ENSO Years: Area Burned and Committed Carbon Emissions

NASA Technical Reports Server (NTRS)

Alencar, A.; Nepstad, D.; Ver-Diaz, M. Del. C.

2004-01-01

"Understory fires" that burn the floor of standing forests are one of the most important types of forest impoverishment in the Amazon, especially during the severe droughts of El Nino Southern Oscillation (ENSO) episodes. However, we are aware of no estimates of the areal extent of these fires for the Brazilian Amazon and, hence, of their contribution to Amazon carbon fluxes to the atmosphere. We calculated the area of forest understory fires for the Brazilian Amazon region during an El Nino (1998) and a non El Nino (1995) year based on forest fire scars mapped with satellite images for three locations in eastern and southern Amazon, where deforestation is concentrated. The three study sites represented a gradient of both forest types and dry season severity. The burning scar maps were used to determine how the percentage of forest that burned varied with distance from agricultural clearings. These spatial functions were then applied to similar forest/climate combinations outside of the study sites to derive an initial estimate for the Brazilian Amazon. Ninety-one percent of the forest area that burned in the study sites was within the first kilometer of a clearing for the non ENSO year and within the first four kilometers for the ENSO year. The area of forest burned by understory forest fire during the severe drought (ENSO) year (3.9 millions of hectares) was 13 times greater than the area burned during the average rainfall year (0.2 million hectares), and twice the area of annual deforestation rate. Dense forest was, proportionally, the forest area most affected by understory fires during the El Nino year, while understory fires were concentrated in transitional forests during the year of average rainfall. Our estimate of aboveground tree biomass killed by fire ranged from 0.06 Pg to 0.38 Pg during the ENSO and from 0,004 Pg to 0,024 Pg during the non ENSO.

78 FR 44275 - Semiannual Regulatory Agenda

Federal Register 2010, 2011, 2012, 2013, 2014

2013-07-23

... 1018-AV68 Evaluation; Constrictor Species From Python, Boa, and Eunectes Genera. National Park Service... Species From Python, Boa, and Eunectes Genera Legal Authority: 18 U.S.C. 42 Abstract: We are making a... Lacey Act: Reticulated python, DeSchauensee's anaconda, green anaconda, and Beni anaconda. The boa...

Emerging Chagas disease: trophic network and cycle of transmission of Trypanosoma cruzi from palm trees in the Amazon.

PubMed Central

Teixeira, A. R.; Monteiro, P. S.; Rebelo, J. M.; Argañaraz, E. R.; Vieira, D.; Lauria-Pires, L.; Nascimento, R.; Vexenat, C. A.; Silva, A. R.; Ault, S. K.; Costa, J. M.

2001-01-01

A trophic network involving molds, invertebrates, and vertebrates, ancestrally adapted to the palm tree (Attalaea phalerata) microhabitat, maintains enzootic Trypanosoma cruzi infections in the Amazonian county Paço do Lumiar, state of Maranhão, Brazil. We assessed seropositivity for T. cruzi infections in the human population of the county, searched in palm trees for the triatomines that harbor these infections, and gathered demographic, environmental, and socioeconomic data. Rhodnius pictipes and R. neglectus in palm-tree frond clefts or in houses were infected with T. cruzi (57% and 41%, respectively). Human blood was found in 6.8% of R. pictipes in houses, and 9 of 10 wild Didelphis marsupialis had virulent T. cruzi infections. Increasing human population density, rain forest deforestation, and human predation of local fauna are risk factors for human T. cruzi infections. PMID:11266300

Preliminary Genetic Analysis Supports Cave Populations as Targets for Conservation in the Endemic Endangered Puerto Rican Boa (Boidae: Epicrates inornatus)

PubMed Central

Revell, Liam J.

2013-01-01

The endemic Puerto Rican boa (Epicrates inornatus) has spent 42 years on the Endangered Species List with little evidence for recovery. One significant impediment to effective conservation planning has been a lack of knowledge of the distribution of genetic variability in the species. It has previously been suggested that boas might best be protected around caves that harbor large populations of bats. Prior study has found Puerto Rican boas at relatively high densities in and around bat caves, which they use both to feed and seek shelter. However, it is unknown whether these behaviorally distinctive populations represent a distinct evolutionary lineage, or (conversely) whether caves harbor representative genetic diversity for the species across the island. We provide the first genetic study of the Puerto Rican boa, and we examine and compare genetic diversity and divergence among two cave populations and two surface populations of boas. We find three haplogroups and an apparent lack of phylogeographic structure across the island. In addition, we find that the two cave populations appear no less diverse than the two surface populations, and harbor multiple mtDNA lineages. We discuss the conservation implications of these findings, including a call for the immediate protection of the remaining cave-associated populations of boas. PMID:23691110

Preliminary genetic analysis supports cave populations as targets for conservation in the endemic endangered Puerto Rican boa (Boidae: Epicrates inornatus).

PubMed

Puente-Rolón, Alberto R; Reynolds, R Graham; Revell, Liam J

2013-01-01

The endemic Puerto Rican boa (Epicrates inornatus) has spent 42 years on the Endangered Species List with little evidence for recovery. One significant impediment to effective conservation planning has been a lack of knowledge of the distribution of genetic variability in the species. It has previously been suggested that boas might best be protected around caves that harbor large populations of bats. Prior study has found Puerto Rican boas at relatively high densities in and around bat caves, which they use both to feed and seek shelter. However, it is unknown whether these behaviorally distinctive populations represent a distinct evolutionary lineage, or (conversely) whether caves harbor representative genetic diversity for the species across the island. We provide the first genetic study of the Puerto Rican boa, and we examine and compare genetic diversity and divergence among two cave populations and two surface populations of boas. We find three haplogroups and an apparent lack of phylogeographic structure across the island. In addition, we find that the two cave populations appear no less diverse than the two surface populations, and harbor multiple mtDNA lineages. We discuss the conservation implications of these findings, including a call for the immediate protection of the remaining cave-associated populations of boas.

Branch xylem density variations across the Amazon Basin

NASA Astrophysics Data System (ADS)

Patiño, S.; Lloyd, J.; Paiva, R.; Baker, T. R.; Quesada, C. A.; Mercado, L. M.; Schmerler, J.; Schwarz, M.; Santos, A. J. B.; Aguilar, A.; Czimczik, C. I.; Gallo, J.; Horna, V.; Hoyos, E. J.; Jimenez, E. M.; Palomino, W.; Peacock, J.; Peña-Cruz, A.; Sarmiento, C.; Sota, A.; Turriago, J. D.; Villanueva, B.; Vitzthum, P.; Alvarez, E.; Arroyo, L.; Baraloto, C.; Bonal, D.; Chave, J.; Costa, A. C. L.; Herrera, R.; Higuchi, N.; Killeen, T.; Leal, E.; Luizão, F.; Meir, P.; Monteagudo, A.; Neil, D.; Núñez-Vargas, P.; Peñuela, M. C.; Pitman, N.; Priante Filho, N.; Prieto, A.; Panfil, S. N.; Rudas, A.; Salomão, R.; Silva, N.; Silveira, M.; Soares Dealmeida, S.; Torres-Lezama, A.; Vásquez-Martínez, R.; Vieira, I.; Malhi, Y.; Phillips, O. L.

2009-04-01

Xylem density is a physical property of wood that varies between individuals, species and environments. It reflects the physiological strategies of trees that lead to growth, survival and reproduction. Measurements of branch xylem density, ρx, were made for 1653 trees representing 598 species, sampled from 87 sites across the Amazon basin. Measured values ranged from 218 kg m-3 for a Cordia sagotii (Boraginaceae) from Mountagne de Tortue, French Guiana to 1130 kg m-3 for an Aiouea sp. (Lauraceae) from Caxiuana, Central Pará, Brazil. Analysis of variance showed significant differences in average ρx across regions and sampled plots as well as significant differences between families, genera and species. A partitioning of the total variance in the dataset showed that species identity (family, genera and species) accounted for 33% with environment (geographic location and plot) accounting for an additional 26%; the remaining "residual" variance accounted for 41% of the total variance. Variations in plot means, were, however, not only accountable by differences in species composition because xylem density of the most widely distributed species in our dataset varied systematically from plot to plot. Thus, as well as having a genetic component, branch xylem density is a plastic trait that, for any given species, varies according to where the tree is growing in a predictable manner. Within the analysed taxa, exceptions to this general rule seem to be pioneer species belonging for example to the Urticaceae whose branch xylem density is more constrained than most species sampled in this study. These patterns of variation of branch xylem density across Amazonia suggest a large functional diversity amongst Amazonian trees which is not well understood.

Multiple remote sensing data sources to assess spatio-temporal patterns of fire incidence over Campos Amazônicos Savanna Vegetation Enclave (Brazilian Amazon).

PubMed

Alves, Daniel Borini; Pérez-Cabello, Fernando

2017-12-01

Fire activity plays an important role in the past, present and future of Earth system behavior. Monitoring and assessing spatial and temporal fire dynamics have a fundamental relevance in the understanding of ecological processes and the human impacts on different landscapes and multiple spatial scales. This work analyzes the spatio-temporal distribution of burned areas in one of the biggest savanna vegetation enclaves in the southern Brazilian Amazon, from 2000 to 2016, deriving information from multiple remote sensing data sources (Landsat and MODIS surface reflectance, TRMM pluviometry and Vegetation Continuous Field tree cover layers). A fire scars database with 30 m spatial resolution was generated using a Landsat time series. MODIS daily surface reflectance was used for accurate dating of the fire scars. TRMM pluviometry data were analyzed to dynamically establish time limits of the yearly dry season and burning periods. Burned area extent, frequency and recurrence were quantified comparing the results annually/seasonally. Additionally, Vegetation Continuous Field tree cover layers were used to analyze fire incidence over different types of tree cover domains. In the last seventeen years, 1.03millionha were burned within the study area, distributed across 1432 fire occurrences, highlighting 2005, 2010 and 2014 as the most affected years. Middle dry season fires represent 86.21% of the total burned areas and 32.05% of fire occurrences, affecting larger amount of higher density tree surfaces than other burning periods. The results provide new insights into the analysis of burned areas of the neotropical savannas, spatially and statistically reinforcing important aspects linked to the seasonality patterns of fire incidence in this landscape. Copyright © 2017 Elsevier B.V. All rights reserved.

Understorey fire propagation and tree mortality on adjacent areas to an Amazonian deforestation fire

Treesearch

J.A. Carvalho; C.A. Gurgel Veras; E.C. Alvarado; D.V. Sandberg; S.J. Leite; R. Gielow; E.R.C. Rabelo; J.C. Santos

2010-01-01

Fire characteristics in tropical ecosystems are poorly documented quantitatively in the literature. This paper describes an understorey fire propagating across the edges of a biomass burn of a cleared primary forest. The experiment was carried out in 2001 in the Amazon forest near Alta Floresta, state of Mato Grosso, Brazil, as part of biomass burning experiments...

Bioactivities of acai (Euterpe precatoria Mart.) fruit pulp, superior antioxidant and anti-inflammatory properties to Euterpe oleracea Mart

USDA-ARS?s Scientific Manuscript database

There are two predominant palm tree species producing edible fruit known as “açai” found widely dispersed through the Amazon: Euterpe oleracea Mart. and Euterpe precatoria Mart. They differ from each other in terms of how the plants grow and their phytochemical composition. E. oleracea (EO) has rece...

Seeing the forest beyond the trees

Treesearch

Sassan Saatchi; Joseph Mascaro; Liang Xu; Michael Keller; Yan Yang; Paul Duffy; Fernando Espirito-Santo; Alessandro Baccini; Jeffery Chambers; David Schimel

2014-01-01

In a recent paper (Mitchard et al. 2014, Global Ecology and Biogeography, 23,935-946) a new map of forest biomass based on a geostatistical model of field data for the Amazon (and surrounding forests) was presented and contrasted with two earlier maps based on remote sensing data Saatchi et al. (2011; RS1) and Baccini et al. (2012; RS2). Mitchard et al....

Hyperdominance in Amazonian forest carbon cycling

PubMed Central

Fauset, Sophie; Johnson, Michelle O.; Gloor, Manuel; Baker, Timothy R.; Monteagudo M., Abel; Brienen, Roel J.W.; Feldpausch, Ted R.; Lopez-Gonzalez, Gabriela; Malhi, Yadvinder; ter Steege, Hans; Pitman, Nigel C.A.; Baraloto, Christopher; Engel, Julien; Pétronelli, Pascal; Andrade, Ana; Camargo, José Luís C.; Laurance, Susan G.W.; Laurance, William F.; Chave, Jerôme; Allie, Elodie; Vargas, Percy Núñez; Terborgh, John W.; Ruokolainen, Kalle; Silveira, Marcos; Aymard C., Gerardo A.; Arroyo, Luzmila; Bonal, Damien; Ramirez-Angulo, Hirma; Araujo-Murakami, Alejandro; Neill, David; Hérault, Bruno; Dourdain, Aurélie; Torres-Lezama, Armando; Marimon, Beatriz S.; Salomão, Rafael P.; Comiskey, James A.; Réjou-Méchain, Maxime; Toledo, Marisol; Licona, Juan Carlos; Alarcón, Alfredo; Prieto, Adriana; Rudas, Agustín; van der Meer, Peter J.; Killeen, Timothy J.; Marimon Junior, Ben-Hur; Poorter, Lourens; Boot, Rene G.A.; Stergios, Basil; Torre, Emilio Vilanova; Costa, Flávia R.C.; Levis, Carolina; Schietti, Juliana; Souza, Priscila; Groot, Nikée; Arets, Eric; Moscoso, Victor Chama; Castro, Wendeson; Coronado, Euridice N. Honorio; Peña-Claros, Marielos; Stahl, Clement; Barroso, Jorcely; Talbot, Joey; Vieira, Ima Célia Guimarães; van der Heijden, Geertje; Thomas, Raquel; Vos, Vincent A.; Almeida, Everton C.; Davila, Esteban Álvarez; Aragão, Luiz E.O.C.; Erwin, Terry L.; Morandi, Paulo S.; de Oliveira, Edmar Almeida; Valadão, Marco B.X.; Zagt, Roderick J.; van der Hout, Peter; Loayza, Patricia Alvarez; Pipoly, John J.; Wang, Ophelia; Alexiades, Miguel; Cerón, Carlos E.; Huamantupa-Chuquimaco, Isau; Di Fiore, Anthony; Peacock, Julie; Camacho, Nadir C. Pallqui; Umetsu, Ricardo K.; de Camargo, Plínio Barbosa; Burnham, Robyn J.; Herrera, Rafael; Quesada, Carlos A.; Stropp, Juliana; Vieira, Simone A.; Steininger, Marc; Rodríguez, Carlos Reynel; Restrepo, Zorayda; Muelbert, Adriane Esquivel; Lewis, Simon L.; Pickavance, Georgia C.; Phillips, Oliver L.

2015-01-01

While Amazonian forests are extraordinarily diverse, the abundance of trees is skewed strongly towards relatively few ‘hyperdominant' species. In addition to their diversity, Amazonian trees are a key component of the global carbon cycle, assimilating and storing more carbon than any other ecosystem on Earth. Here we ask, using a unique data set of 530 forest plots, if the functions of storing and producing woody carbon are concentrated in a small number of tree species, whether the most abundant species also dominate carbon cycling, and whether dominant species are characterized by specific functional traits. We find that dominance of forest function is even more concentrated in a few species than is dominance of tree abundance, with only ≈1% of Amazon tree species responsible for 50% of carbon storage and productivity. Although those species that contribute most to biomass and productivity are often abundant, species maximum size is also influential, while the identity and ranking of dominant species varies by function and by region. PMID:25919449

Hyperdominance in Amazonian forest carbon cycling.

PubMed

Fauset, Sophie; Johnson, Michelle O; Gloor, Manuel; Baker, Timothy R; Monteagudo M, Abel; Brienen, Roel J W; Feldpausch, Ted R; Lopez-Gonzalez, Gabriela; Malhi, Yadvinder; ter Steege, Hans; Pitman, Nigel C A; Baraloto, Christopher; Engel, Julien; Pétronelli, Pascal; Andrade, Ana; Camargo, José Luís C; Laurance, Susan G W; Laurance, William F; Chave, Jerôme; Allie, Elodie; Vargas, Percy Núñez; Terborgh, John W; Ruokolainen, Kalle; Silveira, Marcos; Aymard C, Gerardo A; Arroyo, Luzmila; Bonal, Damien; Ramirez-Angulo, Hirma; Araujo-Murakami, Alejandro; Neill, David; Hérault, Bruno; Dourdain, Aurélie; Torres-Lezama, Armando; Marimon, Beatriz S; Salomão, Rafael P; Comiskey, James A; Réjou-Méchain, Maxime; Toledo, Marisol; Licona, Juan Carlos; Alarcón, Alfredo; Prieto, Adriana; Rudas, Agustín; van der Meer, Peter J; Killeen, Timothy J; Marimon Junior, Ben-Hur; Poorter, Lourens; Boot, Rene G A; Stergios, Basil; Torre, Emilio Vilanova; Costa, Flávia R C; Levis, Carolina; Schietti, Juliana; Souza, Priscila; Groot, Nikée; Arets, Eric; Moscoso, Victor Chama; Castro, Wendeson; Coronado, Euridice N Honorio; Peña-Claros, Marielos; Stahl, Clement; Barroso, Jorcely; Talbot, Joey; Vieira, Ima Célia Guimarães; van der Heijden, Geertje; Thomas, Raquel; Vos, Vincent A; Almeida, Everton C; Davila, Esteban Álvarez; Aragão, Luiz E O C; Erwin, Terry L; Morandi, Paulo S; de Oliveira, Edmar Almeida; Valadão, Marco B X; Zagt, Roderick J; van der Hout, Peter; Loayza, Patricia Alvarez; Pipoly, John J; Wang, Ophelia; Alexiades, Miguel; Cerón, Carlos E; Huamantupa-Chuquimaco, Isau; Di Fiore, Anthony; Peacock, Julie; Camacho, Nadir C Pallqui; Umetsu, Ricardo K; de Camargo, Plínio Barbosa; Burnham, Robyn J; Herrera, Rafael; Quesada, Carlos A; Stropp, Juliana; Vieira, Simone A; Steininger, Marc; Rodríguez, Carlos Reynel; Restrepo, Zorayda; Muelbert, Adriane Esquivel; Lewis, Simon L; Pickavance, Georgia C; Phillips, Oliver L

2015-04-28

While Amazonian forests are extraordinarily diverse, the abundance of trees is skewed strongly towards relatively few 'hyperdominant' species. In addition to their diversity, Amazonian trees are a key component of the global carbon cycle, assimilating and storing more carbon than any other ecosystem on Earth. Here we ask, using a unique data set of 530 forest plots, if the functions of storing and producing woody carbon are concentrated in a small number of tree species, whether the most abundant species also dominate carbon cycling, and whether dominant species are characterized by specific functional traits. We find that dominance of forest function is even more concentrated in a few species than is dominance of tree abundance, with only ≈1% of Amazon tree species responsible for 50% of carbon storage and productivity. Although those species that contribute most to biomass and productivity are often abundant, species maximum size is also influential, while the identity and ranking of dominant species varies by function and by region.

Are ecologically important tree species the most useful? A case study from indigenous people in the Bolivian Amazon.

PubMed

Guèze, Maximilien; Luz, Ana Catarina; Paneque-Gálvez, Jaime; Macía, Manuel J; Orta-Martínez, Martí; Pino, Joan; Reyes-García, Victoria

2014-03-01

Researchers have argued that indigenous peoples preferably use the most apparent plant species, particularly for medicinal uses. However, the association between the ecological importance of a species and its usefulness remains unclear. In this paper we quantify such association for six use categories (firewood, construction, materials, food, medicines and other uses). We collected data on the uses of 58 tree species, as reported by 93 informants in 22 villages in the Tsimane' territory (Bolivian Amazon). We calculated the ecological importance of the same species by deriving their importance value index (IVI) in 48 0.1-ha old-growth forest plots. Matching both data sets, we found a positive relation between the IVI of a species and its overall use value (UV) as well as with its UV for construction and materials. We found a negative relation between IVI and UV for species that were reportedly used for medicine and food uses, and no clear pattern for the other categories. We hypothesize that species used for construction or crafting purposes because of their physical properties are more easily substitutable than species used for medicinal or edible purposes because of their chemical properties.

Are ecologically important tree species the most useful? A case study from indigenous people in the Bolivian Amazon

PubMed Central

Guèze, Maximilien; Luz, Ana Catarina; Paneque-Gálvez, Jaime; Macía, Manuel J.; Orta-Martínez, Martí; Pino, Joan; Reyes-García, Victoria

2015-01-01

Researchers have argued that indigenous peoples preferably use the most apparent plant species, particularly for medicinal uses. However, the association between the ecological importance of a species and its usefulness remains unclear. In this paper we quantify such association for six use categories (firewood, construction, materials, food, medicines and other uses). We collected data on the uses of 58 tree species, as reported by 93 informants in 22 villages in the Tsimane’ territory (Bolivian Amazon). We calculated the ecological importance of the same species by deriving their importance value index (IVI) in 48 0.1-ha old-growth forest plots. Matching both data sets, we found a positive relation between the IVI of a species and its overall use value (UV) as well as with its UV for construction and materials. We found a negative relation between IVI and UV for species that were reportedly used for medicine and food uses, and no clear pattern for the other categories. We hypothesize that species used for construction or crafting purposes because of their physical properties are more easily substitutable than species used for medicinal or edible purposes because of their chemical properties. PMID:26097243

How Hierarchical Topics Evolve in Large Text Corpora.

PubMed

Cui, Weiwei; Liu, Shixia; Wu, Zhuofeng; Wei, Hao

2014-12-01

Using a sequence of topic trees to organize documents is a popular way to represent hierarchical and evolving topics in text corpora. However, following evolving topics in the context of topic trees remains difficult for users. To address this issue, we present an interactive visual text analysis approach to allow users to progressively explore and analyze the complex evolutionary patterns of hierarchical topics. The key idea behind our approach is to exploit a tree cut to approximate each tree and allow users to interactively modify the tree cuts based on their interests. In particular, we propose an incremental evolutionary tree cut algorithm with the goal of balancing 1) the fitness of each tree cut and the smoothness between adjacent tree cuts; 2) the historical and new information related to user interests. A time-based visualization is designed to illustrate the evolving topics over time. To preserve the mental map, we develop a stable layout algorithm. As a result, our approach can quickly guide users to progressively gain profound insights into evolving hierarchical topics. We evaluate the effectiveness of the proposed method on Amazon's Mechanical Turk and real-world news data. The results show that users are able to successfully analyze evolving topics in text data.

Development of a global gridded Argo data set with Barnes successive corrections

NASA Astrophysics Data System (ADS)

Li, Hong; Xu, Fanghua; Zhou, Wei; Wang, Dongxiao; Wright, Jonathon S.; Liu, Zenghong; Lin, Yanluan

2017-02-01

A new 11 year (2004-2014) monthly 1° gridded Argo temperature and salinity data set with 49 vertical levels from the surface to 1950 m depth (named BOA-Argo) is generated for use in ocean research and modeling studies. The data set is produced based on refined Barnes successive corrections by adopting flexible response functions based on a series of error analyses to minimize errors induced by nonuniform spatial distribution of Argo observations. These response functions allow BOA-Argo to capture a greater portion of mesoscale and large-scale signals while compressing small-sale and high-frequency noise relative to the most recent version of the World Ocean Atlas (WOA). BOA-Argo data set is evaluated against other gridded data sets, such as WOA13, Roemmich-Argo, Jamestec-Argo, EN4-Argo, and IPRC-Argo in terms of climatology, independent observations, mixed-layer depth, and so on. Generally, BOA-Argo compares well with other Argo gridded data sets. The RMSEs and correlation coefficients of compared variables from BOA-Argo agree most with those from the Roemmich-Argo. In particular, more mesoscale features are retained in BOA-Argo than others as compared to satellite sea surface heights. These results indicate that the BOA-Argo data set is a useful and promising adding to the current Argo data sets. The proposed refined Barnes method is computationally simple and efficient, so that the BOA-Argo data set can be easily updated to keep pace with tremendous daily increases in the volume of Argo temperature and salinity data.

Quantifying the contribution of root systems to community and individual drought resilience in the Amazon rainforest

NASA Astrophysics Data System (ADS)

Agee, E.; Ivanov, V. Y.; Oliveira, R. S.; Brum, M., Jr.; Saleska, S. R.; Bisht, G.; Prohaska, N.; Taylor, T.; Oliveira Junior, R. C.; Restrepo-Coupe, N.

2017-12-01

The increased intensity and severity of droughts within the Amazon Basin region has emphasized the question of vulnerability and resilience of tropical forests to water limitation. During the recent 2015-2016 drought caused by the anomalous El Nino episode, we monitored a large, diverse sample of trees within the Tapajos National Forest, Brazil, in the footprint of the K67 eddy covariance tower. The observed trees exhibited differential responses in terms of stem water potential and sap flow among species: their regulation of ecophysiological strategies varied from very conservative (`isohydric') behavior, to much less restrained, atmosphere-controlled (`anisohydric') type of response. While much attention has been paid to forest canopies, it remains unclear how the regulation of individual tree root system and root spatial interactions contribute to the emergent individual behavior and the ecosystem-scale characterization of drought resilience. Given the inherent difficulty in monitoring below-ground phenomena, physically-based models are valuable for examining different strategies and properties to reduce the uncertainty of characterization. We use a modified version of the highly parallel DOE PFLOTRAN model to simulate the three-dimensional variably saturated flows and root water uptake for over one thousand individuals within a two-hectare area. Root morphology and intrinsic hydraulic properties are assigned based on statistical distributions developed for tropical trees, which account for the broad spectrum of hydraulic strategies in biodiverse environments. The results demonstrate the dynamic nature of active zone of root water uptake based on local soil water potential gradients. The degree of the corresponding shifts in uptake and root collar potential depend not only on assigned hydraulic properties but also on spatial orientation and size relative to community members. This response highlights the importance of not only tree individual hydraulic traits, but also dynamic spatial interactions in assessing forest drought resilience.

Leaf and stem economics spectra drive diversity of functional plant traits in a dynamic global vegetation model.

PubMed

Sakschewski, Boris; von Bloh, Werner; Boit, Alice; Rammig, Anja; Kattge, Jens; Poorter, Lourens; Peñuelas, Josep; Thonicke, Kirsten

2015-01-22

Functional diversity is critical for ecosystem dynamics, stability and productivity. However, dynamic global vegetation models (DGVMs) which are increasingly used to simulate ecosystem functions under global change, condense functional diversity to plant functional types (PFTs) with constant parameters. Here, we develop an individual- and trait-based version of the DGVM LPJmL (Lund-Potsdam-Jena managed Land) called LPJmL- flexible individual traits (LPJmL-FIT) with flexible individual traits) which we apply to generate plant trait maps for the Amazon basin. LPJmL-FIT incorporates empirical ranges of five traits of tropical trees extracted from the TRY global plant trait database, namely specific leaf area (SLA), leaf longevity (LL), leaf nitrogen content (N area ), the maximum carboxylation rate of Rubisco per leaf area (vcmaxarea), and wood density (WD). To scale the individual growth performance of trees, the leaf traits are linked by trade-offs based on the leaf economics spectrum, whereas wood density is linked to tree mortality. No preselection of growth strategies is taking place, because individuals with unique trait combinations are uniformly distributed at tree establishment. We validate the modeled trait distributions by empirical trait data and the modeled biomass by a remote sensing product along a climatic gradient. Including trait variability and trade-offs successfully predicts natural trait distributions and achieves a more realistic representation of functional diversity at the local to regional scale. As sites of high climatic variability, the fringes of the Amazon promote trait divergence and the coexistence of multiple tree growth strategies, while lower plant trait diversity is found in the species-rich center of the region with relatively low climatic variability. LPJmL-FIT enables to test hypotheses on the effects of functional biodiversity on ecosystem functioning and to apply the DGVM to current challenges in ecosystem management from local to global scales, that is, deforestation and climate change effects. © 2015 John Wiley & Sons Ltd.

NTFP harvesters as citizen scientists: Validating traditional and crowdsourced knowledge on seed production of Brazil nut trees in the Peruvian Amazon.

PubMed

Thomas, Evert; Valdivia, Jheyson; Alcázar Caicedo, Carolina; Quaedvlieg, Julia; Wadt, Lucia Helena O; Corvera, Ronald

2017-01-01

Understanding the factors that underlie the production of non-timber forest products (NTFPs), as well as regularly monitoring production levels, are key to allow sustainability assessments of NTFP extractive economies. Brazil nut (Bertholletia excelsa, Lecythidaceae) seed harvesting from natural forests is one of the cornerstone NTFP economies in Amazonia. In the Peruvian Amazon it is organized in a concession system. Drawing on seed production estimates of >135,000 individual Brazil nut trees from >400 concessions and ethno-ecological interviews with >80 concession holders, here we aimed to (i) assess the accuracy of seed production estimates by Brazil nut seed harvesters, and (ii) validate their traditional ecological knowledge (TEK) about the variables that influence Brazil nut production. We compared productivity estimates with actual field measurements carried out in the study area and found a positive correlation between them. Furthermore, we compared the relationships between seed production and a number of phenotypic, phytosanitary and environmental variables described in literature with those obtained for the seed production estimates and found high consistency between them, justifying the use of the dataset for validating TEK and innovative hypothesis testing. As expected, nearly all TEK on Brazil nut productivity was corroborated by our data. This is reassuring as Brazil nut concession holders, and NTFP harvesters at large, rely on their knowledge to guide the management of the trees upon which their extractive economies are based. Our findings suggest that productivity estimates of Brazil nut trees and possibly other NTFP-producing species could replace or complement actual measurements, which are very expensive and labour intensive, at least in areas where harvesters have a tradition of collecting NTFPs from the same trees over multiple years or decades. Productivity estimates might even be sourced from harvesters through registers on an annual basis, thus allowing a more cost-efficient and robust monitoring of productivity levels.

NTFP harvesters as citizen scientists: Validating traditional and crowdsourced knowledge on seed production of Brazil nut trees in the Peruvian Amazon

PubMed Central

Thomas, Evert; Valdivia, Jheyson; Alcázar Caicedo, Carolina; Quaedvlieg, Julia; Wadt, Lucia Helena O.; Corvera, Ronald

2017-01-01

Understanding the factors that underlie the production of non-timber forest products (NTFPs), as well as regularly monitoring production levels, are key to allow sustainability assessments of NTFP extractive economies. Brazil nut (Bertholletia excelsa, Lecythidaceae) seed harvesting from natural forests is one of the cornerstone NTFP economies in Amazonia. In the Peruvian Amazon it is organized in a concession system. Drawing on seed production estimates of >135,000 individual Brazil nut trees from >400 concessions and ethno-ecological interviews with >80 concession holders, here we aimed to (i) assess the accuracy of seed production estimates by Brazil nut seed harvesters, and (ii) validate their traditional ecological knowledge (TEK) about the variables that influence Brazil nut production. We compared productivity estimates with actual field measurements carried out in the study area and found a positive correlation between them. Furthermore, we compared the relationships between seed production and a number of phenotypic, phytosanitary and environmental variables described in literature with those obtained for the seed production estimates and found high consistency between them, justifying the use of the dataset for validating TEK and innovative hypothesis testing. As expected, nearly all TEK on Brazil nut productivity was corroborated by our data. This is reassuring as Brazil nut concession holders, and NTFP harvesters at large, rely on their knowledge to guide the management of the trees upon which their extractive economies are based. Our findings suggest that productivity estimates of Brazil nut trees and possibly other NTFP-producing species could replace or complement actual measurements, which are very expensive and labour intensive, at least in areas where harvesters have a tradition of collecting NTFPs from the same trees over multiple years or decades. Productivity estimates might even be sourced from harvesters through registers on an annual basis, thus allowing a more cost-efficient and robust monitoring of productivity levels. PMID:28837638

Anti-inflammatory activity of animal oils from the Peruvian Amazon.

PubMed

Schmeda-Hirschmann, Guillermo; Delporte, Carla; Valenzuela-Barra, Gabriela; Silva, Ximena; Vargas-Arana, Gabriel; Lima, Beatriz; Feresin, Gabriela E

2014-10-28

Animal oils and fats from the fishes Electrophorus electricus and Potamotrygon motoro, the reptiles Boa constrictor, Chelonoidis denticulata (Geochelone denticulata) and Melanosuchus niger and the riverine dolphin Inia geoffrensis are used as anti-inflammatory agents in the Peruvian Amazon. The aim of the study was to assess the topic anti-inflammatory effect of the oils/fats as well as to evaluate its antimicrobial activity and fatty acid composition. The oils/fats were purchased from a traditional store at the Iquitos market of Belen, Peru. The topic anti-inflammatory effect was evaluated by the mice ear edema induced by arachidonic acid (AA) and 12-O-tetradecanoylphorbol-13-acetate (TPA) at the dose of 3mg oil/ear. Indomethacine and nimesulide were used as reference anti-inflammatory drugs. The application resembles the traditional topical use of the oils. The antimicrobial effect of the oils/fats was assessed by the microdilution test against reference strains of Escherichia coli, Staphylococcus aureus and Salmonella enteritidis. The fatty acid composition of the oils/fats (as methyl esters) was determined by GC and GC-MS analysis after saponification. All oils/fats showed topic anti-inflammatory activity, with better effect in the TPA-induced mice ear edema assay. The most active drugs were Potamotrygon motoro, Melanosuchus niger and Geochelone denticulata. In the AA-induced assay, the best activity was found for Potamotrygon motoro and Electrophorus electricus oil. The oil of Electrophorus electricus also showed a weak antimicrobial effect with MIC values of 250 µg/mL against Escherichia coli ATCC 25922 and Salmonella enteritidis-MI. The main fatty acids in the oils were oleic, palmitic and linoleic acids. Topical application of all the oils/fats investigated showed anti-inflammatory activity in the mice ear edema assay. The effect can be related with the identity and composition of the fatty acids in the samples. This study gives support to the traditional use of animal oils/fats as ant-inflammatory agents in the Peruvian Amazon. However, new alternative should be encouraged due to the conservation status of several of the animal sources of the crude drugs. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Valvulopathy consistent with endocarditis in an Argentine boa (Boa constrictor occidentalis).

PubMed

Wernick, Morena B; Novo-Matos, José; Ebling, Alessia; Kühn, Karolin; Ruetten, Maja; Hilbe, Monika; Howard, Judith; Chang, Rita; Prohaska, Sarah; Hatt, Jean-Michel

2015-03-01

An Argentine boa (Boa constrictor occidentalis) of 5 yr 7 mo of age was presented for respiratory problems and regurgitation. Radiographs revealed evidence of cardiomegaly and pneumonia. Blood smear examination revealed the presence of intracytoplasmic inclusion bodies in peripheral lymphocytes, consistent with inclusion body disease. Cultures of a tracheal wash sample resulted in growth of Ochrobactrum intermedium and Pseudomonas putida. Echocardiographic examination revealed a large vegetative lesion on the right atrioventricular valve with valvular insufficiency, a mildly dilated right atrium, and pulmonary hypertension. Postmortem examination confirmed the presence of pneumonia and bacterial endocarditis with dystrophic mineralization of the right atrioventricular valve, associated with different bacteria than those cultured from the tracheal wash. The present case is the first report of endocarditis in a boa constrictor and contributes to the rare reports of cardiac disease in snakes.

Reconstructing evolutionary trees in parallel for massive sequences.

PubMed

Zou, Quan; Wan, Shixiang; Zeng, Xiangxiang; Ma, Zhanshan Sam

2017-12-14

Building the evolutionary trees for massive unaligned DNA sequences is challenging and crucial. However, reconstructing evolutionary tree for ultra-large sequences is hard. Massive multiple sequence alignment is also challenging and time/space consuming. Hadoop and Spark are developed recently, which bring spring light for the classical computational biology problems. In this paper, we tried to solve the multiple sequence alignment and evolutionary reconstruction in parallel. HPTree, which is developed in this paper, can deal with big DNA sequence files quickly. It works well on the >1GB files, and gets better performance than other evolutionary reconstruction tools. Users could use HPTree for reonstructing evolutioanry trees on the computer clusters or cloud platform (eg. Amazon Cloud). HPTree could help on population evolution research and metagenomics analysis. In this paper, we employ the Hadoop and Spark platform and design an evolutionary tree reconstruction software tool for unaligned massive DNA sequences. Clustering and multiple sequence alignment are done in parallel. Neighbour-joining model was employed for the evolutionary tree building. We opened our software together with source codes via http://lab.malab.cn/soft/HPtree/ .

Amazon forests did not green up during the 2005 drought

NASA Astrophysics Data System (ADS)

Samanta, A.; Ganguly, S.; Hashimoto, H.; Devadiga, S.; Vermote, E. F.; Knyazikhin, Y.; Nemani, R. R.; Myneni, R. B.

2009-12-01

The sensitivity of Amazon rainforests to dry-season droughts remains unresolved with reports of enhanced tree mortality and forest fires, on one hand, and, excessive forest green-up, on the other. Here using the latest and improved version of satellite-derived vegetation greenness data - Collection 5 (C5) Enhanced Vegetation Index (EVI) - we report that the there is no evidence of large-scale greening of the Amazon during the 2005 drought - approximately 11%-12% of these forests display greening, while, 28%-29% show browning or no-change, and for the rest the data are not of sufficient quality to characterize any changes. In addition, independent satellite-derived data on precipitation, surface radiation and aerosols do not substantiate underlying assumptions of the hypothesis of enhanced photosynthetic capacity of intact Amazon forests stimulated by increased light availability during a drought. First, interannual changes in dry-season greenness are unrelated to concurrent changes in light availability. Second, the 2005 drought cannot be used as a surrogate for light availability to these rainforests owing to persistently high aerosol loads in the atmosphere. Third, the spatial extent and magnitude of greening do not change systematically with drought severity. Finally, the changes in vegetation activity of these forests during the drought-stricken dry season of 2005 are not unique in comparison to that observed during dry seasons of non-drought years. Our analysis also demonstrates the critical role of biomass burning aerosols in limiting light availability to water stressed Amazon forests during the dry season of 2005. This will have important implications for the sensitivity of these forests to similar droughts in future.

Amazon peatlands: quantifying ecosytem's stocks, GHG fluxes and their microbial connections

NASA Astrophysics Data System (ADS)

Cadillo-Quiroz, Hinsby; Lähteenoja, Outi; Buessecker, Steffen; van Haren, Joost

2017-04-01

Reports of hundreds of peatlands across basins in the West and Central Amazon suggest they play an important, previously not considered regional role in organic carbon (OC) and GHG dynamics. Amazon peatlands store ˜3-6 Gt of OC in their waterlogged soils with strong potential for conversion and release of GHG, in fact our recent, and others', efforts have confirmed variable levels of GHG emissions (CO2, N2O, CH4), as well as variable microbial communities across rich to poor soil peatlands. Here, we report early results of quantification of different components making up the aboveground C stocks, the rates and paths for GHG release, and microbial organisms occurring in three ecologically distinct peatland types in the Pastaza-Marañon region of the Peruvian Amazon. Evaluations were done in duplicated continuous monitoring plots established since 2015 at a "palm swamp" (PS), poor "pole forest" (pPF) and a rich "forested" (rF) peatlands. Although overall vegetation "structure" with a few dominant plus several low frequency species was common across the three sites, their botanical composition and tree density was highly contrasting. Aboveground C stocks content showed the following order among sites: rF>PS>pPF, and hence we tested whether this differences can have a direct effect on CH4 emissions rates. CH4 emissions rates from soils were observed in average at 11, 6, and 0.8 mg-C m-2 h-1for rF, PS, and pPF respectively. However, these estimated fluxes needed to be revised when we develop quantifications of CH4 emissions from tree stems. Tree stem fluxes were detected showing a broad variation with nearly nill emissions in some species all the way to maximum fluxes near to ˜90 mg-C m-2 h-1 in other species. Mauritia flexuosa, a highly dominant palm species in PS and ubiquitous to the region, showed the highest ranges of CH4 flux. In the PS site, overall CH4 flux estimate increased by ˜50% when including stem emission weighted by trees' species, density and heights. Flux estimates in p PF did not had a significant change. Analysis across species in the study sites, plus other satellite sites, suggest that in sites stem flux emissions might be conserved with some genera in the Aracaceae, Euphorbiaceae, and Sapotaceae families showing a large emitters capacity. Further characterization also showed that CH4 flux emission from the stems decreases generally with height, suggesting a diffusion constrained stem flux, which seems limited by soil CH4 concentration and wood density. Finally, microbial community composition and methanogenic activity also showed contrasting patterns across sites, with pH being one of the major determinants. GHG producing organisms were detected in different proportions and types across study sites, and importantly methanogenic Archaea closely tracked observed differences of CH4 flux among sites. Nevertheless, the link between vegetation type and density still remain under assessment in our efforts

Benzoxazolinone detoxification by N-Glucosylation: The multi-compartment-network of Zea mays L.

PubMed Central

Schulz, Margot; Filary, Barbara; Kühn, Sabine; Colby, Thomas; Harzen, Anne; Schmidt, Jürgen; Sicker, Dieter; Hennig, Lothar; Hofmann, Diana; Disko, Ulrich; Anders, Nico

2016-01-01

ABSTRACT The major detoxification product in maize roots after 24 h benzoxazolin-2(3H)-one (BOA) exposure was identified as glucoside carbamate resulting from rearrangement of BOA-N-glucoside, but the pathway of N-glucosylation, enzymes involved and the site of synthesis were previously unknown. Assaying whole cell proteins revealed the necessity of H2O2 and Fe2+ ions for glucoside carbamate production. Peroxidase produced BOA radicals are apparently formed within the extraplastic space of the young maize root. Radicals seem to be the preferred substrate for N-glucosylation, either by direct reaction with glucose or, more likely, the N-glucoside is released by glucanase/glucosidase catalyzed hydrolysis from cell wall components harboring fixed BOA. The processes are accompanied by alterations of cell wall polymers. Glucoside carbamate accumulation could be suppressed by the oxireductase inhibitor 2-bromo-4´-nitroacetophenone and by peroxidase inhibitor 2,3-butanedione. Alternatively, activated BOA molecules with an open heterocycle may be produced by microorganisms (e.g., endophyte Fusarium verticillioides) and channeled for enzymatic N-glucosylation. Experiments with transgenic Arabidopsis lines indicate a role of maize glucosyltransferase BX9 in BOA-N-glycosylation. Western blots with BX9 antibody demonstrate the presence of BX9 in the extraplastic space. Proteomic analyses verified a high BOA responsiveness of multiple peroxidases in the apoplast/cell wall. BOA incubations led to shifting, altered abundances and identities of the apoplast and cell wall located peroxidases, glucanases, glucosidases and glutathione transferases (GSTs). GSTs could function as glucoside carbamate transporters. The highly complex, compartment spanning and redox-regulated glucoside carbamate pathway seems to be mainly realized in Poaceae. In maize, carbamate production is independent from benzoxazinone synthesis. PMID:26645909

Benzoxazolinone detoxification by N-Glucosylation: The multi-compartment-network of Zea mays L.

PubMed

Schulz, Margot; Filary, Barbara; Kühn, Sabine; Colby, Thomas; Harzen, Anne; Schmidt, Jürgen; Sicker, Dieter; Hennig, Lothar; Hofmann, Diana; Disko, Ulrich; Anders, Nico

2016-01-01

The major detoxification product in maize roots after 24 h benzoxazolin-2(3H)-one (BOA) exposure was identified as glucoside carbamate resulting from rearrangement of BOA-N-glucoside, but the pathway of N-glucosylation, enzymes involved and the site of synthesis were previously unknown. Assaying whole cell proteins revealed the necessity of H2O2 and Fe(2+) ions for glucoside carbamate production. Peroxidase produced BOA radicals are apparently formed within the extraplastic space of the young maize root. Radicals seem to be the preferred substrate for N-glucosylation, either by direct reaction with glucose or, more likely, the N-glucoside is released by glucanase/glucosidase catalyzed hydrolysis from cell wall components harboring fixed BOA. The processes are accompanied by alterations of cell wall polymers. Glucoside carbamate accumulation could be suppressed by the oxireductase inhibitor 2-bromo-4´-nitroacetophenone and by peroxidase inhibitor 2,3-butanedione. Alternatively, activated BOA molecules with an open heterocycle may be produced by microorganisms (e.g., endophyte Fusarium verticillioides) and channeled for enzymatic N-glucosylation. Experiments with transgenic Arabidopsis lines indicate a role of maize glucosyltransferase BX9 in BOA-N-glycosylation. Western blots with BX9 antibody demonstrate the presence of BX9 in the extraplastic space. Proteomic analyses verified a high BOA responsiveness of multiple peroxidases in the apoplast/cell wall. BOA incubations led to shifting, altered abundances and identities of the apoplast and cell wall located peroxidases, glucanases, glucosidases and glutathione transferases (GSTs). GSTs could function as glucoside carbamate transporters. The highly complex, compartment spanning and redox-regulated glucoside carbamate pathway seems to be mainly realized in Poaceae. In maize, carbamate production is independent from benzoxazinone synthesis.

Technical and institutional innovation in agroforestry for protected areas management in the Brazilian Amazon: opportunities and limitations.

PubMed

Schroth, Götz; da Mota, Maria do Socorro S

2013-08-01

Tropical forest countries are struggling with the partially conflicting policy objectives of socioeconomic development, forest conservation, and safeguarding the livelihoods of local forest-dependent people. We worked with communities in the lower Tapajós region of the central Brazilian Amazon for over 10 years to understand their traditional and present land use practices, the constraints, and decision making processes imposed by their biophysical, socioeconomic, and political environment, and to facilitate development trajectories to improve the livelihoods of forest communities while conserving the forest on the farms and in the larger landscape. The work focused on riverine communities initially in the Tapajós National Forest and then in the Tapajós-Arapiuns Extractive Reserve. These communities have a century-old tradition of planting rubber agroforests which despite their abandonment during the 1990s still widely characterize the vegetation of the river banks, especially in the two protected areas where they are safe from the recent expansion of mechanized rice and soybean agriculture. The project evolved from the capacity-building of communities in techniques to increase the productivity of the rubber agroforests without breaking their low-input and low-risk logic, to the establishment of a community enterprise that allowed reserve inhabitants to reforest their own land with tree species of their choice and sell reforestation (not carbon) credits to local timber companies while retaining the ownership of the trees. By making land use practices economically more viable and ecologically more appropriate for protected areas, the project shows ways to strengthen the system of extractive and sustainable development reserves that protects millions of hectares of Amazon forest with the consent of the communities that inhabit them.

Technical and Institutional Innovation in Agroforestry for Protected Areas Management in the Brazilian Amazon: Opportunities and Limitations

NASA Astrophysics Data System (ADS)

Schroth, Götz; da Mota, Maria do Socorro S.

2013-08-01

Tropical forest countries are struggling with the partially conflicting policy objectives of socioeconomic development, forest conservation, and safeguarding the livelihoods of local forest-dependent people. We worked with communities in the lower Tapajós region of the central Brazilian Amazon for over 10 years to understand their traditional and present land use practices, the constraints, and decision making processes imposed by their biophysical, socioeconomic, and political environment, and to facilitate development trajectories to improve the livelihoods of forest communities while conserving the forest on the farms and in the larger landscape. The work focused on riverine communities initially in the Tapajós National Forest and then in the Tapajós-Arapiuns Extractive Reserve. These communities have a century-old tradition of planting rubber agroforests which despite their abandonment during the 1990s still widely characterize the vegetation of the river banks, especially in the two protected areas where they are safe from the recent expansion of mechanized rice and soybean agriculture. The project evolved from the capacity-building of communities in techniques to increase the productivity of the rubber agroforests without breaking their low-input and low-risk logic, to the establishment of a community enterprise that allowed reserve inhabitants to reforest their own land with tree species of their choice and sell reforestation (not carbon) credits to local timber companies while retaining the ownership of the trees. By making land use practices economically more viable and ecologically more appropriate for protected areas, the project shows ways to strengthen the system of extractive and sustainable development reserves that protects millions of hectares of Amazon forest with the consent of the communities that inhabit them.

Necromass in undisturbed and logged forests in the Brazilian Amazon.

Treesearch

Michael Palace; Michael Keller; Gregory P. Asner; Jose Natalino M. Silva; Carlos Passos

2007-01-01

Necromass is an important stock of carbon in tropical forests. We estimated volume, density, and mass of fallen and standing necromass in undisturbed and selectively logged forests at Juruena, Mato Grosso, Brazil (10.488S, 58.478W). We also measured standing dead trees at the Tapajos National Forest, Para, Brazil (3.088S, 54.948W) complementing our earlier study there...

Carbon in Amazon forests: unexpected seasonal fluxes and disturbance-induced losses.

Treesearch

S. R. Saleska; S. D. Miller; D. M. Matross; M. L. Goulden; S. C. Wofsy; H. R. da Rocha; P. B. de Camargo; P. Crill; B. C. Daube; H. C. de Freitas; L. Hutyra; M. Keller; V. Kirchhoff; M. Menton; J. W. Munger; H. E. Pyle; A. H. Rice; H. Silva

2003-01-01

The net ecosystem exchange of carbon dioxide was measured by eddy covariance methods for 3 years in two old-growth forest sites near Santarém, Brazil. Carbon was lost in the wet season and gained in the dry season, which was opposite to the seasonal cycles of both tree growth and model predictions. The 3-year average carbon loss was 1.3 (confidence...

Impact of Climate Variability on Forest Dynamics in Eastern Amazon: the Role of Large-Scale Droughts, Local Droughts, and Other Disturbances

NASA Astrophysics Data System (ADS)

Longo, M.; Hayek, M.; Alves, L. F.; Bonal, D.; Camargo, P. B.; Restrepo-Coupe, N.; Fitzjarrald, D. R.; Knox, R. G.; Saleska, S. R.; da Silva, R.; Stark, S.; Tapajos, R.; Wiedemann, K. T.; Moorcroft, P. R.; Wofsy, S. C.

2012-12-01

Droughts in the Amazon - especially in the southern and eastern regions - are likely to become more frequent and severe with climate change, potentially resulting in significant losses of biomass. Therefore, understanding the ecosystem response to past events, such as the major Amazonian drought of 2005, is fundamental to forecast the ecosystem resilience to extreme droughts in case they become more frequent. In this study we evaluate whether and how large-scale droughts affected the forest dynamics both in terms of productivity and in mortality, and what is the relative contribution of other factors, such as windthrow and smaller local droughts, to explain the observed dynamics. We focus on two sites in Eastern Amazon: Tapajos National Forest near Santarem, Brazil (S67), and Guyaflux tower at Paracou Field Station in French Guiana (GYF). We analyzed site-level observations from eddy flux towers, biometric measurements, and simulated the environment with the Ecosystem Demography Model, version 2 (ED2). This model has the advantage to represent the forest structure in size and functional type, and also biophysical processes within and above canopy, making comparisons with observations more direct. Preliminary results indicate that while the large-scale 2005 drought influenced productivity at both sites, local droughts and windthrow had also a significant contribution to the variation in productivity and mortality rates. Mortality in S67 increased significantly between 2005 and 2007, and was slightly higher in GYF between 2006 and 2008. In both cases, however, higher incidence of uprooted and broken trees suggests a significant contribution from windthrow to mortality. In S67, preliminary simulations using ED2 indicate that water stress reduced productivity during a local but severe drought at the end of 2006, followed by an increase in mortality particularly among trees with diameter at breast height less than 35 cm and early successional trees. In GYF, both ED2 and observations show decline in productivity late in the 2008 dry season, which was longer and drier than average, although the impact on mortality was negligible.

Spatial ecology of Puerto Rican boas (Epicrates inornatus) in a hurricane impacted forest

Treesearch

Joseph M. Wunderle; Javier E. Mercado; Bernard Parresol; Esteban Terranova

2004-01-01

Spatial ecology of Puerto Rican boas (Epicrates inornatus, Boidae) was studied with radiotelemetry in a subtropical wet forest recovering from a major hurricane (7–9 yr previous) when Hurricane Georges struck. Different boas were studied during three periods relative to Hurricane Georges: before only; before and after; and after only. Mean daily...

Spatial Ecology of Puerto Rican Boas (Epicrates inornatus) in a Hurricane Impacted Forest.

Treesearch

Joseph M. Wunderle Jr.; Javier E. Mercado Bernard Parresol Esteban Terranova 2

2004-01-01

Spatial ecology of Puerto Rican boas (Epicrates inornatus, Boidae) was studied with radiotelemetry in a subtropical wet forest recovering from a major hurricane (7–9 yr previous) when Hurricane Georges struck. Different boas were studied during three periods relative to Hurricane Georges: before only; before and after; and after only. Mean daily movement per month...

The Discovery of XY Sex Chromosomes in a Boa and Python.

PubMed

Gamble, Tony; Castoe, Todd A; Nielsen, Stuart V; Banks, Jaison L; Card, Daren C; Schield, Drew R; Schuett, Gordon W; Booth, Warren

2017-07-24

For over 50 years, biologists have accepted that all extant snakes share the same ZW sex chromosomes derived from a common ancestor [1-3], with different species exhibiting sex chromosomes at varying stages of differentiation. Accordingly, snakes have been a well-studied model for sex chromosome evolution in animals [1, 4]. A review of the literature, however, reveals no compelling support that boas and pythons possess ZW sex chromosomes [2, 5]. Furthermore, phylogenetic patterns of facultative parthenogenesis in snakes and a sex-linked color mutation in the ball python (Python regius) are best explained by boas and pythons possessing an XY sex chromosome system [6, 7]. Here we demonstrate that a boa (Boa imperator) and python (Python bivittatus) indeed possess XY sex chromosomes, based on the discovery of male-specific genetic markers in both species. We use these markers, along with transcriptomic and genomic data, to identify distinct sex chromosomes in boas and pythons, demonstrating that XY systems evolved independently in each lineage. This discovery highlights the dynamic evolution of vertebrate sex chromosomes and further enhances the value of snakes as a model for studying sex chromosome evolution. Copyright © 2017 Elsevier Ltd. All rights reserved.

Phylogeographic and population genetic analyses reveal multiple species of Boa and independent origins of insular dwarfism.

PubMed

Card, Daren C; Schield, Drew R; Adams, Richard H; Corbin, Andrew B; Perry, Blair W; Andrew, Audra L; Pasquesi, Giulia I M; Smith, Eric N; Jezkova, Tereza; Boback, Scott M; Booth, Warren; Castoe, Todd A

2016-09-01

Boa is a Neotropical genus of snakes historically recognized as monotypic despite its expansive distribution. The distinct morphological traits and color patterns exhibited by these snakes, together with the wide diversity of ecosystems they inhabit, collectively suggest that the genus may represent multiple species. Morphological variation within Boa also includes instances of dwarfism observed in multiple offshore island populations. Despite this substantial diversity, the systematics of the genus Boa has received little attention until very recently. In this study we examined the genetic structure and phylogenetic relationships of Boa populations using mitochondrial sequences and genome-wide SNP data obtained from RADseq. We analyzed these data at multiple geographic scales using a combination of phylogenetic inference (including coalescent-based species delimitation) and population genetic analyses. We identified extensive population structure across the range of the genus Boa and multiple lines of evidence for three widely-distributed clades roughly corresponding with the three primary land masses of the Western Hemisphere. We also find both mitochondrial and nuclear support for independent origins and parallel evolution of dwarfism on offshore island clusters in Belize and Cayos Cochinos Menor, Honduras. Copyright © 2016 Elsevier Inc. All rights reserved.

Contrasting the microbiomes from forest rhizosphere and deeper bulk soil from an Amazon rainforest reserve.

PubMed

Fonseca, Jose Pedro; Hoffmann, Luisa; Cabral, Bianca Catarina Azeredo; Dias, Victor Hugo Giordano; Miranda, Marcio Rodrigues; de Azevedo Martins, Allan Cezar; Boschiero, Clarissa; Bastos, Wanderley Rodrigues; Silva, Rosane

2018-02-05

Pristine forest ecosystems provide a unique perspective for the study of plant-associated microbiota since they host a great microbial diversity. Although the Amazon forest is one of the hotspots of biodiversity around the world, few metagenomic studies described its microbial community diversity thus far. Understanding the environmental factors that can cause shifts in microbial profiles is key to improving soil health and biogeochemical cycles. Here we report a taxonomic and functional characterization of the microbiome from the rhizosphere of Brosimum guianense (Snakewood), a native tree, and bulk soil samples from a pristine Brazilian Amazon forest reserve (Cuniã), for the first time by the shotgun approach. We identified several fungi and bacteria taxon significantly enriched in forest rhizosphere compared to bulk soil samples. For archaea, the trend was the opposite, with many archaeal phylum and families being considerably more enriched in bulk soil compared to forest rhizosphere. Several fungal and bacterial decomposers like Postia placenta and Catenulispora acidiphila which help maintain healthy forest ecosystems were found enriched in our samples. Other bacterial species involved in nitrogen (Nitrobacter hamburgensis and Rhodopseudomonas palustris) and carbon cycling (Oligotropha carboxidovorans) were overrepresented in our samples indicating the importance of these metabolic pathways for the Amazon rainforest reserve soil health. Hierarchical clustering based on taxonomic similar microbial profiles grouped the forest rhizosphere samples in a distinct clade separated from bulk soil samples. Principal coordinate analysis of our samples with publicly available metagenomes from the Amazon region showed grouping into specific rhizosphere and bulk soil clusters, further indicating distinct microbial community profiles. In this work, we reported significant shifts in microbial community structure between forest rhizosphere and bulk soil samples from an Amazon forest reserve that are probably caused by more than one environmental factors such as rhizosphere and soil depth. Copyright © 2017 Elsevier B.V. All rights reserved.

Molecular Characterization of MYB28 Involved in Aliphatic Glucosinolate Biosynthesis in Chinese Kale (Brassica oleracea var. alboglabra Bailey).

PubMed

Yin, Ling; Chen, Hancai; Cao, Bihao; Lei, Jianjun; Chen, Guoju

2017-01-01

Glucosinolates are Brassicaceae-specific secondary metabolites that act as crop protectants, flavor precursors, and cancer-prevention agents, which shows strong evidences of anticarcinogentic, antioxidant, and antimicrobial activities. MYB28 , the R2R3-MYB28 transcription factor, directly activates genes involved in aliphatic glucosinolate biosynthesis. In this study, the MYB28 homology ( BoaMYB28 ) was identified in Chinese kale ( Brassica oleracea var. alboglabra Bailey). Analysis of the nucleotide sequence indicated that the cDNA of BoaMYB28 was 1257 bp with an ORF of 1020 bp. The deduced BoaMYB28 protein was a polypeptide of 339 amino acid with a putative molecular mass of 38 kDa and a pI of 6.87. Sequence homology and phylogenetic analysis showed that BoaMYB28 was most closely related to MYB28 homologs from the Brassicaceae family. The expression levels of BoaMYB28 varies across the tissues and developmental stages. BoaMYB28 transcript levels were higher in leaves and stems compared with those in cotyledons, flowers, and siliques. BoaMYB28 was expressed across all developmental leaf stages, with higher transcript accumulation in mature and inflorescence leaves. Over-expression and RNAi studies showed that BoaMYB28 retains the basic MYB28 gene function as a major transcriptional regulator of aliphatic glucosinolate pathway. The results indicated that over-expression and RNAi lines showed no visible difference on plant morphology. The contents of aliphatic glucosinolates and transcript levels of aliphatic glucosinolate biosynthesis genes increased in over-expression lines and decreased in RNAi lines. In over-expression lines, aliphatic glucosinolate contents were 1.5- to 3-fold higher than those in the wild-type, while expression levels of aliphatic glucosinolate biosynthesis genes were 1.5- to 4-fold higher than those in the wild-type. In contrast, the contents of aliphatic glucosinolates and transcript levels of aliphatic glucosinolate biosynthesis genes in RNAi lines were considerably lower than those in the wild-type. The results suggest that BoaMYB28 has the potential to alter the aliphatic glucosinolates contents in Chinese kale at the genetic level.

Molecular Characterization of MYB28 Involved in Aliphatic Glucosinolate Biosynthesis in Chinese Kale (Brassica oleracea var. alboglabra Bailey)

PubMed Central

Yin, Ling; Chen, Hancai; Cao, Bihao; Lei, Jianjun; Chen, Guoju

2017-01-01

Glucosinolates are Brassicaceae-specific secondary metabolites that act as crop protectants, flavor precursors, and cancer-prevention agents, which shows strong evidences of anticarcinogentic, antioxidant, and antimicrobial activities. MYB28, the R2R3-MYB28 transcription factor, directly activates genes involved in aliphatic glucosinolate biosynthesis. In this study, the MYB28 homology (BoaMYB28) was identified in Chinese kale (Brassica oleracea var. alboglabra Bailey). Analysis of the nucleotide sequence indicated that the cDNA of BoaMYB28 was 1257 bp with an ORF of 1020 bp. The deduced BoaMYB28 protein was a polypeptide of 339 amino acid with a putative molecular mass of 38 kDa and a pI of 6.87. Sequence homology and phylogenetic analysis showed that BoaMYB28 was most closely related to MYB28 homologs from the Brassicaceae family. The expression levels of BoaMYB28 varies across the tissues and developmental stages. BoaMYB28 transcript levels were higher in leaves and stems compared with those in cotyledons, flowers, and siliques. BoaMYB28 was expressed across all developmental leaf stages, with higher transcript accumulation in mature and inflorescence leaves. Over-expression and RNAi studies showed that BoaMYB28 retains the basic MYB28 gene function as a major transcriptional regulator of aliphatic glucosinolate pathway. The results indicated that over-expression and RNAi lines showed no visible difference on plant morphology. The contents of aliphatic glucosinolates and transcript levels of aliphatic glucosinolate biosynthesis genes increased in over-expression lines and decreased in RNAi lines. In over-expression lines, aliphatic glucosinolate contents were 1.5- to 3-fold higher than those in the wild-type, while expression levels of aliphatic glucosinolate biosynthesis genes were 1.5- to 4-fold higher than those in the wild-type. In contrast, the contents of aliphatic glucosinolates and transcript levels of aliphatic glucosinolate biosynthesis genes in RNAi lines were considerably lower than those in the wild-type. The results suggest that BoaMYB28 has the potential to alter the aliphatic glucosinolates contents in Chinese kale at the genetic level. PMID:28680435

Death from drought in tropical forests is triggered by hydraulics not carbon starvation

NASA Astrophysics Data System (ADS)

Rowland, L.; da Costa, A. C. L.; Galbraith, D. R.; Oliveira, R. S.; Binks, O. J.; Oliveira, A. A. R.; Pullen, A. M.; Doughty, C. E.; Metcalfe, D. B.; Vasconcelos, S. S.; Ferreira, L. V.; Malhi, Y.; Grace, J.; Mencuccini, M.; Meir, P.

2015-12-01

Drought threatens tropical rainforests over seasonal to decadal timescales, but the drivers of tree mortality following drought remain poorly understood. It has been suggested that reduced availability of non-structural carbohydrates (NSC) critically increases mortality risk through insufficient carbon supply to metabolism (‘carbon starvation’). However, little is known about how NSC stores are affected by drought, especially over the long term, and whether they are more important than hydraulic processes in determining drought-induced mortality. Using data from the world’s longest-running experimental drought study in tropical rainforest (in the Brazilian Amazon), we test whether carbon starvation or deterioration of the water-conducting pathways from soil to leaf trigger tree mortality. Biomass loss from mortality in the experimentally droughted forest increased substantially after >10 years of reduced soil moisture availability. The mortality signal was dominated by the death of large trees, which were at a much greater risk of hydraulic deterioration than smaller trees. However, we find no evidence that the droughted trees suffered carbon starvation, as their NSC concentrations were similar to those of non-droughted trees, and growth rates did not decline in either living or dying trees. Our results indicate that hydraulics, rather than carbon starvation, triggers tree death from drought in tropical rainforest.

Death from drought in tropical forests is triggered by hydraulics not carbon starvation.

PubMed

Rowland, L; da Costa, A C L; Galbraith, D R; Oliveira, R S; Binks, O J; Oliveira, A A R; Pullen, A M; Doughty, C E; Metcalfe, D B; Vasconcelos, S S; Ferreira, L V; Malhi, Y; Grace, J; Mencuccini, M; Meir, P

2015-12-03

Drought threatens tropical rainforests over seasonal to decadal timescales, but the drivers of tree mortality following drought remain poorly understood. It has been suggested that reduced availability of non-structural carbohydrates (NSC) critically increases mortality risk through insufficient carbon supply to metabolism ('carbon starvation'). However, little is known about how NSC stores are affected by drought, especially over the long term, and whether they are more important than hydraulic processes in determining drought-induced mortality. Using data from the world's longest-running experimental drought study in tropical rainforest (in the Brazilian Amazon), we test whether carbon starvation or deterioration of the water-conducting pathways from soil to leaf trigger tree mortality. Biomass loss from mortality in the experimentally droughted forest increased substantially after >10 years of reduced soil moisture availability. The mortality signal was dominated by the death of large trees, which were at a much greater risk of hydraulic deterioration than smaller trees. However, we find no evidence that the droughted trees suffered carbon starvation, as their NSC concentrations were similar to those of non-droughted trees, and growth rates did not decline in either living or dying trees. Our results indicate that hydraulics, rather than carbon starvation, triggers tree death from drought in tropical rainforest.

Relating tree growth to rainfall in Bolivian rain forests: a test for six species using tree ring analysis.

PubMed

Brienen, Roel J W; Zuidema, Pieter A

2005-11-01

Many tropical regions show one distinct dry season. Often, this seasonality induces cambial dormancy of trees, particularly if these belong to deciduous species. This will often lead to the formation of annual rings. The aim of this study was to determine whether tree species in the Bolivian Amazon region form annual rings and to study the influence of the total amount and seasonal distribution of rainfall on diameter growth. Ring widths were measured on stem discs of a total of 154 trees belonging to six rain forest species. By correlating ring width and monthly rainfall data we proved the annual character of the tree rings for four of our study species. For two other species the annual character was proved by counting rings on trees of known age and by radiocarbon dating. The results of the climate-growth analysis show a positive relationship between tree growth and rainfall in certain periods of the year, indicating that rainfall plays a major role in tree growth. Three species showed a strong relationship with rainfall at the beginning of the rainy season, while one species is most sensitive to the rainfall at the end of the previous growing season. These results clearly demonstrate that tree ring analysis can be successfully applied in the tropics and that it is a promising method for various research disciplines.

Types and rates of forest disturbance in Brazilian Legal Amazon, 2000–2013

PubMed Central

Tyukavina, Alexandra; Hansen, Matthew C.; Potapov, Peter V.; Stehman, Stephen V.; Smith-Rodriguez, Kevin; Okpa, Chima; Aguilar, Ricardo

2017-01-01

Deforestation rates in primary humid tropical forests of the Brazilian Legal Amazon (BLA) have declined significantly since the early 2000s. Brazil’s national forest monitoring system provides extensive information for the BLA but lacks independent validation and systematic coverage outside of primary forests. We use a sample-based approach to consistently quantify 2000–2013 tree cover loss in all forest types of the region and characterize the types of forest disturbance. Our results provide unbiased forest loss area estimates, which confirm the reduction of primary forest clearing (deforestation) documented by official maps. By the end of the study period, nonprimary forest clearing, together with primary forest degradation within the BLA, became comparable in area to deforestation, accounting for an estimated 53% of gross tree cover loss area and 26 to 35% of gross aboveground carbon loss. The main type of tree cover loss in all forest types was agroindustrial clearing for pasture (63% of total loss area), followed by small-scale forest clearing (12%) and agroindustrial clearing for cropland (9%), with natural woodlands being directly converted into croplands more often than primary forests. Fire accounted for 9% of the 2000–2013 primary forest disturbance area, with peak disturbances corresponding to droughts in 2005, 2007, and 2010. The rate of selective logging exploitation remained constant throughout the study period, contributing to forest fire vulnerability and degradation pressures. As the forest land use transition advances within the BLA, comprehensive tracking of forest transitions beyond primary forest loss is required to achieve accurate carbon accounting and other monitoring objectives. PMID:28439536

Continental-scale patterns of canopy tree composition and function across Amazonia.

PubMed

ter Steege, Hans; Pitman, Nigel C A; Phillips, Oliver L; Chave, Jerome; Sabatier, Daniel; Duque, Alvaro; Molino, Jean-François; Prévost, Marie-Françoise; Spichiger, Rodolphe; Castellanos, Hernán; von Hildebrand, Patricio; Vásquez, Rodolfo

2006-09-28

The world's greatest terrestrial stores of biodiversity and carbon are found in the forests of northern South America, where large-scale biogeographic patterns and processes have recently begun to be described. Seven of the nine countries with territory in the Amazon basin and the Guiana shield have carried out large-scale forest inventories, but such massive data sets have been little exploited by tropical plant ecologists. Although forest inventories often lack the species-level identifications favoured by tropical plant ecologists, their consistency of measurement and vast spatial coverage make them ideally suited for numerical analyses at large scales, and a valuable resource to describe the still poorly understood spatial variation of biomass, diversity, community composition and forest functioning across the South American tropics. Here we show, by using the seven forest inventories complemented with trait and inventory data collected elsewhere, two dominant gradients in tree composition and function across the Amazon, one paralleling a major gradient in soil fertility and the other paralleling a gradient in dry season length. The data set also indicates that the dominance of Fabaceae in the Guiana shield is not necessarily the result of root adaptations to poor soils (nodulation or ectomycorrhizal associations) but perhaps also the result of their remarkably high seed mass there as a potential adaptation to low rates of disturbance.

Continental-scale patterns of canopy tree composition and function across Amazonia

NASA Astrophysics Data System (ADS)

Ter Steege, Hans; Pitman, Nigel C. A.; Phillips, Oliver L.; Chave, Jerome; Sabatier, Daniel; Duque, Alvaro; Molino, Jean-François; Prévost, Marie-Françoise; Spichiger, Rodolphe; Castellanos, Hernán; von Hildebrand, Patricio; Vásquez, Rodolfo

2006-09-01

The world's greatest terrestrial stores of biodiversity and carbon are found in the forests of northern South America, where large-scale biogeographic patterns and processes have recently begun to be described. Seven of the nine countries with territory in the Amazon basin and the Guiana shield have carried out large-scale forest inventories, but such massive data sets have been little exploited by tropical plant ecologists. Although forest inventories often lack the species-level identifications favoured by tropical plant ecologists, their consistency of measurement and vast spatial coverage make them ideally suited for numerical analyses at large scales, and a valuable resource to describe the still poorly understood spatial variation of biomass, diversity, community composition and forest functioning across the South American tropics. Here we show, by using the seven forest inventories complemented with trait and inventory data collected elsewhere, two dominant gradients in tree composition and function across the Amazon, one paralleling a major gradient in soil fertility and the other paralleling a gradient in dry season length. The data set also indicates that the dominance of Fabaceae in the Guiana shield is not necessarily the result of root adaptations to poor soils (nodulation or ectomycorrhizal associations) but perhaps also the result of their remarkably high seed mass there as a potential adaptation to low rates of disturbance.

Rapid tree carbon stock recovery in managed Amazonian forests.

PubMed

Rutishauser, Ervan; Hérault, Bruno; Baraloto, Christopher; Blanc, Lilian; Descroix, Laurent; Sotta, Eleneide Doff; Ferreira, Joice; Kanashiro, Milton; Mazzei, Lucas; d'Oliveira, Marcus V N; de Oliveira, Luis C; Peña-Claros, Marielos; Putz, Francis E; Ruschel, Ademir R; Rodney, Ken; Roopsind, Anand; Shenkin, Alexander; da Silva, Katia E; de Souza, Cintia R; Toledo, Marisol; Vidal, Edson; West, Thales A P; Wortel, Verginia; Sist, Plinio

2015-09-21

While around 20% of the Amazonian forest has been cleared for pastures and agriculture, one fourth of the remaining forest is dedicated to wood production. Most of these production forests have been or will be selectively harvested for commercial timber, but recent studies show that even soon after logging, harvested stands retain much of their tree-biomass carbon and biodiversity. Comparing species richness of various animal taxa among logged and unlogged forests across the tropics, Burivalova et al. found that despite some variability among taxa, biodiversity loss was generally explained by logging intensity (the number of trees extracted). Here, we use a network of 79 permanent sample plots (376 ha total) located at 10 sites across the Amazon Basin to assess the main drivers of time-to-recovery of post-logging tree carbon (Table S1). Recovery time is of direct relevance to policies governing management practices (i.e., allowable volumes cut and cutting cycle lengths), and indirectly to forest-based climate change mitigation interventions. Copyright © 2015 Elsevier Ltd. All rights reserved.

Detecting tree-fall gap disturbances in tropical rain forests with airborne lidar

NASA Astrophysics Data System (ADS)

Espirito-Santo, F. D. B.; Saatchi, S.; Keller, M.

2017-12-01

Forest inventory studies in the Amazon indicate a large terrestrial carbon sink. However, field plots may fail to represent forest mortality processes at landscape-scales of tropical forests. Here we characterize the frequency distribution of tree-fall gap disturbances in natural forests of tropical forests using a novel combination of forest inventory and airborne lidar data. We quantify gap size frequency distribution along vertical and horizontal dimensions in ten Neotropical forest canopies distributed across gradients of climate and landscapes using airborne lidar measurements. We assessed all canopy openings related to each class of tree height which yields a three dimensional structure of the distribution of canopy gaps. Gap frequency distributions from lidar CHM data vary markedly with minimum gap size thresholds, but we found that natural forest disturbances (tree-fall gaps) follow a power-law distribution with narrow range of power-law exponents (-1.2 to -1.3). These power-law exponents from gap frequency distributions provide insights into how natural forest disturbances are distributed over tropical forest landscape.

There's no place like home: seedling mortality contributes to the habitat specialisation of tree species across Amazonia.

PubMed

Fortunel, Claire; Paine, C E Timothy; Fine, Paul V A; Mesones, Italo; Goret, Jean-Yves; Burban, Benoit; Cazal, Jocelyn; Baraloto, Christopher

2016-10-01

Understanding the mechanisms generating species distributions remains a challenge, especially in hyperdiverse tropical forests. We evaluated the role of rainfall variation, soil gradients and herbivory on seedling mortality, and how variation in seedling performance along these gradients contributes to habitat specialisation. In a 4-year experiment, replicated at the two extremes of the Amazon basin, we reciprocally transplanted 4638 tree seedlings of 41 habitat-specialist species from seven phylogenetic lineages among the three most important forest habitats of lowland Amazonia. Rainfall variation, flooding and soil gradients strongly influenced seedling mortality, whereas herbivory had negligible impact. Seedling mortality varied strongly among habitats, consistent with predictions for habitat specialists in most lineages. This suggests that seedling performance is a primary determinant of the habitat associations of adult trees across Amazonia. It further suggests that tree diversity, currently mostly harboured in terra firme forests, may be strongly impacted by the predicted climate changes in Amazonia. © 2016 John Wiley & Sons Ltd/CNRS.

Role of vegetation change in future climate under the A1B scenario and a climate stabilisation scenario, using the HadCM3C earth system model

NASA Astrophysics Data System (ADS)

Falloon, P. D.; Dankers, R.; Betts, R. A.; Jones, C. D.; Booth, B. B. B.; Lambert, F. H.

2012-06-01

The aim of our study was to use the coupled climate-carbon cycle model HadCM3C to quantify climate impact of ecosystem changes over recent decades and under future scenarios, due to changes in both atmospheric CO2 and surface albedo. We use two future scenarios - the IPCC SRES A1B scenario, and a climate stabilisation scenario (2C20), allowing us to assess the impact of climate mitigation on results. We performed a pair of simulations under each scenario - one in which vegetation was fixed at the initial state and one in which vegetation changes dynamically in response to climate change, as determined by the interactive vegetation model within HadCM3C. In our simulations with interactive vegetation, relatively small changes in global vegetation coverage were found, mainly dominated by increases in scrub and needleleaf trees at high latitudes and losses of broadleaf trees and grasses across the Amazon. Globally this led to a loss of terrestrial carbon, mainly from the soil. Global changes in carbon storage were related to the regional losses from the Amazon and gains at high latitude. Regional differences in carbon storage between the two scenarios were largely driven by the balance between warming-enhanced decomposition and altered vegetation growth. Globally, interactive vegetation reduced albedo acting to enhance albedo changes due to climate change. This was mainly related to the darker land surface over high latitudes (due to vegetation expansion, particularly during winter and spring); small increases in albedo occurred over the Amazon. As a result, there was a relatively small impact of vegetation change on most global annual mean climate variables, which was generally greater under A1B than 2C20, with markedly stronger local-to-regional and seasonal impacts. Globally, vegetation change amplified future annual temperature increases by 0.24 and 0.15 K (under A1B and 2C20, respectively) and increased global precipitation, with reductions in precipitation over the Amazon and increases over high latitudes. In general, changes were stronger over land - for example, global temperature changes due to interactive vegetation of 0.43 and 0.28 K under A1B and 2C20, respectively. Regionally, the warming influence of future vegetation change in our simulations was driven by the balance between driving factors. For instance, reduced tree cover over the Amazon reduced evaporation (particularly during summer), outweighing the cooling influence of any small albedo changes. In contrast, at high latitudes the warming impact of reduced albedo (particularly during winter and spring) due to increased vegetation cover appears to have offset any cooling due to small evaporation increases. Climate mitigation generally reduced the impact of vegetation change on future global and regional climate in our simulations. Our study therefore suggests that there is a need to consider both biogeochemical and biophysical effects in climate adaptation and mitigation decision making.

Role of vegetation change in future climate under the A1B scenario and a climate stabilisation scenario, using the HadCM3C Earth system model

NASA Astrophysics Data System (ADS)

Falloon, P. D.; Dankers, R.; Betts, R. A.; Jones, C. D.; Booth, B. B. B.; Lambert, F. H.

2012-11-01

The aim of our study was to use the coupled climate-carbon cycle model HadCM3C to quantify climate impact of ecosystem changes over recent decades and under future scenarios, due to changes in both atmospheric CO2 and surface albedo. We use two future scenarios - the IPCC SRES A1B scenario, and a climate stabilisation scenario (2C20), allowing us to assess the impact of climate mitigation on results. We performed a pair of simulations under each scenario - one in which vegetation was fixed at the initial state and one in which vegetation changes dynamically in response to climate change, as determined by the interactive vegetation model within HadCM3C. In our simulations with interactive vegetation, relatively small changes in global vegetation coverage were found, mainly dominated by increases in shrub and needleleaf trees at high latitudes and losses of broadleaf trees and grasses across the Amazon. Globally this led to a loss of terrestrial carbon, mainly from the soil. Global changes in carbon storage were related to the regional losses from the Amazon and gains at high latitude. Regional differences in carbon storage between the two scenarios were largely driven by the balance between warming-enhanced decomposition and altered vegetation growth. Globally, interactive vegetation reduced albedo acting to enhance albedo changes due to climate change. This was mainly related to the darker land surface over high latitudes (due to vegetation expansion, particularly during December-January and March-May); small increases in albedo occurred over the Amazon. As a result, there was a relatively small impact of vegetation change on most global annual mean climate variables, which was generally greater under A1B than 2C20, with markedly stronger local-to-regional and seasonal impacts. Globally, vegetation change amplified future annual temperature increases by 0.24 and 0.15 K (under A1B and 2C20, respectively) and increased global precipitation, with reductions in precipitation over the Amazon and increases over high latitudes. In general, changes were stronger over land - for example, global temperature changes due to interactive vegetation of 0.43 and 0.28 K under A1B and 2C20, respectively. Regionally, the warming influence of future vegetation change in our simulations was driven by the balance between driving factors. For instance, reduced tree cover over the Amazon reduced evaporation (particularly during June-August), outweighing the cooling influence of any small albedo changes. In contrast, at high latitudes the warming impact of reduced albedo (particularly during December-February and March-May) due to increased vegetation cover appears to have offset any cooling due to small evaporation increases. Climate mitigation generally reduced the impact of vegetation change on future global and regional climate in our simulations. Our study therefore suggests that there is a need to consider both biogeochemical and biophysical effects in climate adaptation and mitigation decision making.

Impact of Facial Conformation on Canine Health: Brachycephalic Obstructive Airway Syndrome

PubMed Central

Packer, Rowena M. A.; Hendricks, Anke; Tivers, Michael S.; Burn, Charlotte C.

2015-01-01

The domestic dog may be the most morphologically diverse terrestrial mammalian species known to man; pedigree dogs are artificially selected for extreme aesthetics dictated by formal Breed Standards, and breed-related disorders linked to conformation are ubiquitous and diverse. Brachycephaly–foreshortening of the facial skeleton–is a discrete mutation that has been selected for in many popular dog breeds e.g. the Bulldog, Pug, and French Bulldog. A chronic, debilitating respiratory syndrome, whereby soft tissue blocks the airways, predominantly affects dogs with this conformation, and thus is labelled Brachycephalic Obstructive Airway Syndrome (BOAS). Despite the name of the syndrome, scientific evidence quantitatively linking brachycephaly with BOAS is lacking, but it could aid efforts to select for healthier conformations. Here we show, in (1) an exploratory study of 700 dogs of diverse breeds and conformations, and (2) a confirmatory study of 154 brachycephalic dogs, that BOAS risk increases sharply in a non-linear manner as relative muzzle length shortens. BOAS only occurred in dogs whose muzzles comprised less than half their cranial lengths. Thicker neck girths also increased BOAS risk in both populations: a risk factor for human sleep apnoea and not previously realised in dogs; and obesity was found to further increase BOAS risk. This study provides evidence that breeding for brachycephaly leads to an increased risk of BOAS in dogs, with risk increasing as the morphology becomes more exaggerated. As such, dog breeders and buyers should be aware of this risk when selecting dogs, and breeding organisations should actively discourage exaggeration of this high-risk conformation in breed standards and the show ring. PMID:26509577

Impact of Facial Conformation on Canine Health: Brachycephalic Obstructive Airway Syndrome.

PubMed

Packer, Rowena M A; Hendricks, Anke; Tivers, Michael S; Burn, Charlotte C

2015-01-01

The domestic dog may be the most morphologically diverse terrestrial mammalian species known to man; pedigree dogs are artificially selected for extreme aesthetics dictated by formal Breed Standards, and breed-related disorders linked to conformation are ubiquitous and diverse. Brachycephaly--foreshortening of the facial skeleton--is a discrete mutation that has been selected for in many popular dog breeds e.g. the Bulldog, Pug, and French Bulldog. A chronic, debilitating respiratory syndrome, whereby soft tissue blocks the airways, predominantly affects dogs with this conformation, and thus is labelled Brachycephalic Obstructive Airway Syndrome (BOAS). Despite the name of the syndrome, scientific evidence quantitatively linking brachycephaly with BOAS is lacking, but it could aid efforts to select for healthier conformations. Here we show, in (1) an exploratory study of 700 dogs of diverse breeds and conformations, and (2) a confirmatory study of 154 brachycephalic dogs, that BOAS risk increases sharply in a non-linear manner as relative muzzle length shortens. BOAS only occurred in dogs whose muzzles comprised less than half their cranial lengths. Thicker neck girths also increased BOAS risk in both populations: a risk factor for human sleep apnoea and not previously realised in dogs; and obesity was found to further increase BOAS risk. This study provides evidence that breeding for brachycephaly leads to an increased risk of BOAS in dogs, with risk increasing as the morphology becomes more exaggerated. As such, dog breeders and buyers should be aware of this risk when selecting dogs, and breeding organisations should actively discourage exaggeration of this high-risk conformation in breed standards and the show ring.

Efficiently approximating the Pareto frontier: Hydropower dam placement in the Amazon basin

USGS Publications Warehouse

Wu, Xiaojian; Gomes-Selman, Jonathan; Shi, Qinru; Xue, Yexiang; Garcia-Villacorta, Roosevelt; Anderson, Elizabeth; Sethi, Suresh; Steinschneider, Scott; Flecker, Alexander; Gomes, Carla P.

2018-01-01

Real–world problems are often not fully characterized by a single optimal solution, as they frequently involve multiple competing objectives; it is therefore important to identify the so-called Pareto frontier, which captures solution trade-offs. We propose a fully polynomial-time approximation scheme based on Dynamic Programming (DP) for computing a polynomially succinct curve that approximates the Pareto frontier to within an arbitrarily small > 0 on treestructured networks. Given a set of objectives, our approximation scheme runs in time polynomial in the size of the instance and 1/. We also propose a Mixed Integer Programming (MIP) scheme to approximate the Pareto frontier. The DP and MIP Pareto frontier approaches have complementary strengths and are surprisingly effective. We provide empirical results showing that our methods outperform other approaches in efficiency and accuracy. Our work is motivated by a problem in computational sustainability concerning the proliferation of hydropower dams throughout the Amazon basin. Our goal is to support decision-makers in evaluating impacted ecosystem services on the full scale of the Amazon basin. Our work is general and can be applied to approximate the Pareto frontier of a variety of multiobjective problems on tree-structured networks.

Floodplains as an Achilles’ heel of Amazonian forest resilience

PubMed Central

Flores, Bernardo M.; Holmgren, Milena; van Nes, Egbert H.; Jakovac, Catarina C.; Mesquita, Rita C. G.; Scheffer, Marten

2017-01-01

The massive forests of central Amazonia are often considered relatively resilient against climatic variation, but this view is challenged by the wildfires invoked by recent droughts. The impact of such fires that spread from pervasive sources of ignition may reveal where forests are less likely to persist in a drier future. Here we combine field observations with remotely sensed information for the whole Amazon to show that the annually inundated lowland forests that run through the heart of the system may be trapped relatively easily into a fire-dominated savanna state. This lower forest resilience on floodplains is suggested by patterns of tree cover distribution across the basin, and supported by our field and remote sensing studies showing that floodplain fires have a stronger and longer-lasting impact on forest structure as well as soil fertility. Although floodplains cover only 14% of the Amazon basin, their fires can have substantial cascading effects because forests and peatlands may release large amounts of carbon, and wildfires can spread to adjacent uplands. Floodplains are thus an Achilles’ heel of the Amazon system when it comes to the risk of large-scale climate-driven transitions. PMID:28396440

Plant Family-Specific Impacts of Petroleum Pollution on Biodiversity and Leaf Chlorophyll Content in the Amazon Rainforest of Ecuador

PubMed Central

Arellano, Paul; Tansey, Kevin; Balzter, Heiko; Tellkamp, Markus

2017-01-01

In recent decades petroleum pollution in the tropical rainforest has caused significant environmental damage in vast areas of the Amazon region. At present the extent of this damage is not entirely clear. Little is known about the specific impacts of petroleum pollution on tropical vegetation. In a field expedition to the Ecuadorian Amazon over 1100 leaf samples were collected from tropical trees in polluted and unpolluted sites. Plant families were identified for 739 of the leaf samples and compared between sites. Plant biodiversity indices show a reduction of the plant biodiversity when the site was affected by petroleum pollution. In addition, reflectance and transmittance were measured with a field spectroradiometer for every leaf sample and leaf chlorophyll content was estimated using reflectance model inversion with the radiative tranfer model PROSPECT. Four of the 15 plant families that are most representative of the ecoregion (Melastomataceae, Fabaceae, Rubiaceae and Euphorbiaceae) had significantly lower leaf chlorophyll content in the polluted areas compared to the unpolluted areas. This suggests that these families are more sensitive to petroleum pollution. The polluted site is dominated by Melastomataceae and Rubiaceae, suggesting that these plant families are particularly competitive in the presence of pollution. This study provides evidence of a decrease of plant diversity and richness caused by petroleum pollution and of a plant family-specific response of leaf chlorophyll content to petroleum pollution in the Ecuadorian Amazon using information from field spectroscopy and radiative transfer modelling. PMID:28103307

Plant Family-Specific Impacts of Petroleum Pollution on Biodiversity and Leaf Chlorophyll Content in the Amazon Rainforest of Ecuador.

PubMed

Arellano, Paul; Tansey, Kevin; Balzter, Heiko; Tellkamp, Markus

2017-01-01

In recent decades petroleum pollution in the tropical rainforest has caused significant environmental damage in vast areas of the Amazon region. At present the extent of this damage is not entirely clear. Little is known about the specific impacts of petroleum pollution on tropical vegetation. In a field expedition to the Ecuadorian Amazon over 1100 leaf samples were collected from tropical trees in polluted and unpolluted sites. Plant families were identified for 739 of the leaf samples and compared between sites. Plant biodiversity indices show a reduction of the plant biodiversity when the site was affected by petroleum pollution. In addition, reflectance and transmittance were measured with a field spectroradiometer for every leaf sample and leaf chlorophyll content was estimated using reflectance model inversion with the radiative tranfer model PROSPECT. Four of the 15 plant families that are most representative of the ecoregion (Melastomataceae, Fabaceae, Rubiaceae and Euphorbiaceae) had significantly lower leaf chlorophyll content in the polluted areas compared to the unpolluted areas. This suggests that these families are more sensitive to petroleum pollution. The polluted site is dominated by Melastomataceae and Rubiaceae, suggesting that these plant families are particularly competitive in the presence of pollution. This study provides evidence of a decrease of plant diversity and richness caused by petroleum pollution and of a plant family-specific response of leaf chlorophyll content to petroleum pollution in the Ecuadorian Amazon using information from field spectroscopy and radiative transfer modelling.

Imaging Laser Altimetry in the Amazon: Mapping Large Areas of Topography, Vegetation Height and Structure, and Biomass

NASA Technical Reports Server (NTRS)

Blair, J. Bryan; Nelson, B.; dosSantos, J.; Valeriano, D.; Houghton, R.; Hofton, M.; Lutchke, S.; Sun, Q.

2002-01-01

A flight mission of NASA GSFC's Laser Vegetation Imaging Sensor (LVIS) is planned for June-August 2003 in the Amazon region of Brazil. The goal of this flight mission is to map the vegetation height and structure and ground topography of a large area of the Amazon. This data will be used to produce maps of true ground topography, vegetation height, and estimated above-ground biomass and for comparison with and potential calibration of Synthetic Aperture Radar (SAR) data. Approximately 15,000 sq. km covering various regions of the Amazon will be mapped. The LVIS sensor has the unique ability to accurately sense the ground topography beneath even the densest of forest canopies. This is achieved by using a high signal-to-noise laser altimeter to detect the very weak reflection from the ground that is available only through small gaps in between leaves and between tree canopies. Often the amount of ground signal is 1% or less of the total returned echo. Once the ground elevation is identified, that is used as the reference surface from which we measure the vertical height and structure of the vegetation. Test data over tropical forests have shown excellent correlation between LVIS measurements and biomass, basal area, stem density, ground topography, and canopy height. Examples of laser altimetry data over forests and the relationships to biophysical parameters will be shown. Also, recent advances in the LVIS instrument will be discussed.

Flowering phenology and its implications for management of big-leaf mahogany Swietenia macrophylla in Brazilian Amazonia.

PubMed

Grogan, James; Loveless, Marilyn D

2013-11-01

Flowering phenology is a crucial determinant of reproductive success and offspring genetic diversity in plants. We measure the flowering phenology of big-leaf mahogany (Swietenia macrophylla, Meliaceae), a widely distributed neotropical tree, and explore how disturbance from logging impacts its reproductive biology. We use a crown scoring system to estimate the timing and duration of population-level flowering at three forest sites in the Brazilian Amazon over a five-year period. We combine this information with data on population structure and spatial distribution to consider the implications of logging for population flowering patterns and reproductive success. Mahogany trees as small as 14 cm diam flowered, but only trees > 30 cm diam flowered annually or supra-annually. Mean observed flowering periods by focal trees ranged from 18-34 d, and trees flowered sequentially during 3-4 mo beginning in the dry season. Focal trees demonstrated significant interannual correlation in flowering order. Estimated population-level flowering schedules resembled that of the focal trees, with temporal isolation between early and late flowering trees. At the principal study site, conventional logging practices eliminated 87% of mahogany trees > 30 cm diam and an estimated 94% of annual pre-logging floral effort. Consistent interannual patterns of sequential flowering among trees create incompletely isolated subpopulations, constraining pollen flow. After harvests, surviving subcommercial trees will have fewer, more distant, and smaller potential partners, with probable consequences for post-logging regeneration. These results have important implications for the sustainability of harvesting systems for tropical timber species.

Tropical Tree Trait Diversity Enhances Forest Biomass Resilience in a Dynamic Global Vegetation Model

NASA Astrophysics Data System (ADS)

Sakschewski, B.; Kirsten, T.; von Bloh, W.; Poorter, L.; Pena-Claros, M.; Boit, A.

2016-12-01

Functional diversity of ecosystems has been found to increase ecosystem functions and therefore enhance ecosystem resilience against environmental stressors. However, global carbon-cycle and biosphere models still classify the global vegetation into a relatively small number of distinct plant functional types (PFT) with constant features over space and time. Therefore, those models might underestimate the resilience and adaptive capacity of natural vegetation under climate change by ignoring positive effects that functional diversity might bring about. We diversified a set a of selected tree traits in a dynamic global vegetation model (LPJmL). In the new subversion, called LPJmL-FIT, Amazon region biomass stocks and forest structure appear significantly more resilient against climate change. Enhanced tree trait diversity enables the simulated rainforests to adjust to new environmental conditions via ecological sorting. These results may stimulate a new debate on the value of biodiversity for climate change mitigation.

Productivity of aboveground coarse wood biomass and stand age related to soil hydrology of Amazonian forests in the Purus-Madeira interfluvial area

NASA Astrophysics Data System (ADS)

Cintra, B. B. L.; Schietti, J.; Emillio, T.; Martins, D.; Moulatlet, G.; Souza, P.; Levis, C.; Quesada, C. A.; Schöngart, J.

2013-04-01

The ongoing demand for information on forest productivity has increased the number of permanent monitoring plots across the Amazon. Those plots, however, do not comprise the whole diversity of forest types in the Amazon. The complex effects of soil, climate and hydrology on the productivity of seasonally waterlogged interfluvial wetland forests are still poorly understood. The presented study is the first field-based estimate for tree ages and wood biomass productivity in the vast interfluvial region between the Purus and Madeira rivers. We estimate stand age and wood biomass productivity by a combination of tree-ring data and allometric equations for biomass stocks of eight plots distributed along 600 km in the Purus-Madeira interfluvial area that is crossed by the BR-319 highway. We relate stand age and wood biomass productivity to hydrological and edaphic conditions. Mean productivity and stand age were 5.6 ± 1.1 Mg ha-1 yr-1 and 102 ± 18 yr, respectively. There is a strong relationship between tree age and diameter, as well as between mean diameter increment and mean wood density within a plot. Regarding the soil hydromorphic properties we find a positive correlation with wood biomass productivity and a negative relationship with stand age. Productivity also shows a positive correlation with the superficial phosphorus concentration. In addition, superficial phosphorus concentration increases with enhanced soil hydromorphic condition. We raise three hypotheses to explain these results: (1) the reduction of iron molecules on the saturated soils with plinthite layers close to the surface releases available phosphorous for the plants; (2) the poor structure of the saturated soils creates an environmental filter selecting tree species of faster growth rates and shorter life spans and (3) plant growth on saturated soil is favored during the dry season, since there should be low restrictions for soil water availability.

Gap formation and carbon cycling in the Brazilian Amazon: measurement using high-resolution optical remote sensing and studies in large forest plots

Treesearch

F. D. B. Espirito-Santo; M. M. Keller; E. Linder; R. C. Oliveira Junior; C. Pereira; C. G. Oliveira

2013-01-01

Background: The dynamics of gaps plays a role in the regimes of tree mortality, production of coarse woody debris (CWD) and the variability of light in the forest understory. Aims: To quantify the area affected by, and the carbon fluxes associated with, natural gap-phase disturbances in a tropical lowland evergreen rain forest by use of ground measurements and high-...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jardine, A. B.; Jardine, K. J.; Fuentes, J. D.

Despite orders of magnitude difference in atmospheric reactivity and great diversity in biological functioning, little is known about monoterpene speciation in tropical forests. Here we report vertically resolved ambient air mixing ratios for 12 monoterpenes in a central Amazon rainforest including observations of the highly reactive cis-β-ocimene (160 ppt), trans-β-ocimene (79 ppt), and terpinolene (32 ppt) which accounted for an estimated 21% of total monoterpene composition yet 55% of the upper canopy monoterpene ozonolysis rate. All 12 monoterpenes showed a mixing ratio peak in the upper canopy, with three demonstrating subcanopy peaks in 7 of 11 profiles. Leaf level emissionsmore » of highly reactive monoterpenes accounted for up to 1.9% of photosynthesis confirming light-dependent emissions across several Amazon tree genera. These results suggest that highly reactive monoterpenes play important antioxidant roles during photosynthesis in plants and serve as near-canopy sources of secondary organic aerosol precursors through atmospheric photooxidation via ozonolysis.« less

Consecutive virgin births in the new world boid snake, the Colombian rainbow Boa, Epicrates maurus.

PubMed

Booth, Warren; Million, Larry; Reynolds, R Graham; Burghardt, Gordon M; Vargo, Edward L; Schal, Coby; Tzika, Athanasia C; Schuett, Gordon W

2011-01-01

Until recently, facultative automictic parthenogenesis within the squamate reptiles exhibiting ZZ:ZW genetic sex determination has resulted in single reproductive events producing male (ZZ) or female (ZW) offspring. With the recent discovery of viable parthenogenetically produced female (WW) Boa constrictors, the existence of further parthenogenetic events resulting in WW females was questioned. Here, we provide genetic evidence for consecutive virgin births by a female Colombian rainbow boa (Epicrates maurus), resulting in the production of WW females likely through terminal fusion automixis. Samples were screened at 22 microsatellite loci with 12 amplifying unambiguous products. Of these, maternal heterozygosity was observed in 4, with the offspring differentially homozygous at each locus. This study documents the first record of parthenogenesis within the genus Epicrates, a second within the serpent lineage Boidae, and the third genetically confirmed case of consecutive virgin births of viable offspring within any vertebrate lineage. Unlike the recent record in Boa constrictors, the female described here was isolated from conspecifics from birth, demonstrating that males are not required to stimulate parthenogenetic reproduction in this species and possibly other Boas.

Beam Output Audit results within the EORTC Radiation Oncology Group network.

PubMed

Hurkmans, Coen W; Christiaens, Melissa; Collette, Sandra; Weber, Damien Charles

2016-12-15

Beam Output Auditing (BOA) is one key process of the EORTC radiation therapy quality assurance program. Here the results obtained between 2005 and 2014 are presented and compared to previous results.For all BOA reports the following parameters were scored: centre, country, date of audit, beam energies and treatment machines audited, auditing organisation, percentage of agreement between stated and measured dose.Four-hundred and sixty-one BOA reports were analyzed containing the results of 1790 photon and 1366 electron beams, delivered by 755 different treatment machines. The majority of beams (91.1%) were within the optimal limit of ≤ 3%. Only 13 beams (0.4%; n = 9 electrons; n = 4 photons), were out of the range of acceptance of ≤ 5%. Previous reviews reported a much higher percentage of 2.5% or more of the BOAs with >5% deviation.The majority of EORTC centres present beam output variations within the 3% tolerance cutoff value and only 0.4% of audited beams presented with variations of more than 5%. This is an important improvement compared to previous BOA results.

Shifts in indigenous culture relate to forest tree diversity: a case study from the Tsimane', Bolivian Amazon.

PubMed

Guèze, Maximilien; Luz, Ana Catarina; Paneque-Gálvez, Jaime; Macía, Manuel J; Orta-Martínez, Martí; Pino, Joan; Reyes-García, Victoria

2015-06-01

Understanding how indigenous peoples' management practices relate to biological diversity requires addressing contemporary changes in indigenous peoples' way of life. This study explores the association between cultural change among a Bolivian Amazonian indigenous group, the Tsimane', and tree diversity in forests surrounding their villages. We interviewed 86 informants in six villages about their level of attachment to traditional Tsimane' values, our proxy for cultural change. We estimated tree diversity (Fisher's Alpha index) by inventorying trees in 48 0.1-ha plots in old-growth forests distributed in the territory of the same villages. We used multivariate models to assess the relation between cultural change and alpha tree diversity. Cultural change was associated with alpha tree diversity and the relation showed an inverted U-shape, thus suggesting that tree alpha diversity peaked in villages undergoing intermediate cultural change. Although the results do not allow for testing the direction of the relation, we propose that cultural change relates to tree diversity through the changes in practices and behaviors that affect the traditional ecological knowledge of Tsimane' communities; further research is needed to determine the causality. Our results also find support in the intermediate disturbance hypothesis, and suggest that indigenous management can be seen as an intermediate form of anthropogenic disturbance affecting forest communities in a subtle, non-destructive way.

Shifts in indigenous culture relate to forest tree diversity: a case study from the Tsimane’, Bolivian Amazon

PubMed Central

Guèze, Maximilien; Luz, Ana Catarina; Paneque-Gálvez, Jaime; Macía, Manuel J.; Orta-Martínez, Martí; Pino, Joan; Reyes-García, Victoria

2015-01-01

Understanding how indigenous peoples’ management practices relate to biological diversity requires addressing contemporary changes in indigenous peoples’ way of life. This study explores the association between cultural change among a Bolivian Amazonian indigenous group, the Tsimane’, and tree diversity in forests surrounding their villages. We interviewed 86 informants in six villages about their level of attachment to traditional Tsimane’ values, our proxy for cultural change. We estimated tree diversity (Fisher’s Alpha index) by inventorying trees in 48 0.1-ha plots in old-growth forests distributed in the territory of the same villages. We used multivariate models to assess the relation between cultural change and alpha tree diversity. Cultural change was associated with alpha tree diversity and the relation showed an inverted U-shape, thus suggesting that tree alpha diversity peaked in villages undergoing intermediate cultural change. Although the results do not allow for testing the direction of the relation, we propose that cultural change relates to tree diversity through the changes in practices and behaviors that affect the traditional ecological knowledge of Tsimane’ communities; further research is needed to determine the causality. Our results also find support in the intermediate disturbance hypothesis, and suggest that indigenous management can be seen as an intermediate form of anthropogenic disturbance affecting forest communities in a subtle, non-destructive way. PMID:26097240

Perceptions of environmental change and use of traditional knowledge to plan riparian forest restoration with relocated communities in Alcântara, Eastern Amazon.

PubMed

Celentano, Danielle; Rousseau, Guillaume Xavier; Engel, Vera Lex; Façanha, Cristiane Lima; Oliveira, Elivaldo Moreira de; Moura, Emanoel Gomes de

2014-01-27

Riparian forests provide ecosystem services that are essential for human well-being. The Pepital River is the main water supply for Alcântara (Brazil) and its forests are disappearing. This is affecting water volume and distribution in the region. Promoting forest restoration is imperative. In deprived regions, restoration success depends on the integration of ecology, livelihoods and traditional knowledge (TEK). In this study, an interdisciplinary research framework is proposed to design riparian forest restoration strategies based on ecological data, TEK and social needs. This study takes place in a region presenting a complex history of human relocation and land tenure. Local populations from seven villages were surveyed to document livelihood (including 'free-listing' of agricultural crops and homegarden tree species). Additionally, their perceptions toward environmental changes were explored through semi-structured interviews (n = 79). Ethnobotanical information on forest species and their uses were assessed by local-specialists (n = 19). Remnants of conserved forests were surveyed to access ecological information on tree species (three plots of 1,000 m2). Results included descriptive statistics, frequency and Smith’s index of salience of the free-list results. The local population depends primarily on slash-and-burn subsistence agriculture to meet their needs. Interviewees showed a strong empirical knowledge about the environmental problems of the river, and of their causes, consequences and potential solutions. Twenty-four tree species (dbh > 10 cm) were found at the reference sites. Tree density averaged 510 individuals per hectare (stdv = 91.6); and 12 species were considered the most abundant (density > 10ind/ha). There was a strong consensus among plant-specialists about the most important trees. The species lists from reference sites and plant-specialists presented an important convergence. Slash-and-burn agriculture is the main source of livelihood but also the main driver of forest degradation. Effective restoration approaches must transform problems into solutions by empowering local people. Successional agroforestry combining annual crops and trees may be a suitable transitional phase for restoration. The model must be designed collectively and include species of ecological, cultural, and socioeconomic value. In deprived communities of the Amazon, forest restoration must be a process that combines environmental and social gains.

Biogeochemistry and biodiversity interact to govern N2 fixers (Fabaceae) across Amazon tropical forests

NASA Astrophysics Data System (ADS)

Batterman, Sarah; Hedin, Lars; Lloyd, Jon; Quesada, Beto

2015-04-01

Dinitrogen (N2)-fixing trees in the Fabaceae fulfill a central role in tropical rainforests by supplying nitrogen from the atmosphere, yet whether they will support a forest CO2 sink in the future by alleviating nitrogen limitation may depend on whether and how they are controlled by local environmental conditions. Theory predicts that soil nutrients govern the function of N2 fixers, yet there have been no large-scale field-based tests of this idea. Moreover, recent findings indicate that N2-fixing species behave differently in biogeochemical cycles, suggesting that any environmental control may differ by species, and that the diversity of N2-fixing trees may be critical for ensuring tropical forest function. In this talk, we will use the RAINFOR dataset of 108 (~1.0 ha) lowland tropical rainforest plots from across the Amazon Basin to test whether the abundance and diversity of N2-fixing trees are controlled by soil nutrient availability (i.e., increasing with phosphorus and decreasing with nitrogen), or if fixer abundance and diversity simply follow the dynamics of all tree species. We also test an alternative - but not mutually exclusive - hypothesis that the governing factor for fixers is forest disturbance. Results show a surprising lack of control by local nutrients or disturbance on the abundance or diversity of N2 fixers. The dominant driver of fixer diversity was the total number of tree species, with fixers comprising 10% of all species in a forest plot (R2 = 0.75, linear regression). When considering the dominant taxa of N2 fixers (Inga, Swartzia, Tachigali) alone, environmental factors (nitrogen, phosphorus and disturbance) became important and clearly governed their abundance. These taxa, which contain >60% of N2-fixing trees in the data set, appear to have evolved to specialize in different local environmental conditions. The strong biogeochemistry-by-biodiversity interaction observed here points to a need to consider individual species or taxa of N2 fixers and their differential constraints and roles in biogeochemical cycles across tropical forests. Such an individual-based perspective may improve our understanding of the ability of N2 fixers to overcome any future nitrogen constraints as CO2 levels rise in the atmosphere.

Perceptions of environmental change and use of traditional knowledge to plan riparian forest restoration with relocated communities in Alcântara, Eastern Amazon

PubMed Central

2014-01-01

Background Riparian forests provide ecosystem services that are essential for human well-being. The Pepital River is the main water supply for Alcântara (Brazil) and its forests are disappearing. This is affecting water volume and distribution in the region. Promoting forest restoration is imperative. In deprived regions, restoration success depends on the integration of ecology, livelihoods and traditional knowledge (TEK). In this study, an interdisciplinary research framework is proposed to design riparian forest restoration strategies based on ecological data, TEK and social needs. Methods This study takes place in a region presenting a complex history of human relocation and land tenure. Local populations from seven villages were surveyed to document livelihood (including ‘free-listing’ of agricultural crops and homegarden tree species). Additionally, their perceptions toward environmental changes were explored through semi-structured interviews (n = 79). Ethnobotanical information on forest species and their uses were assessed by local-specialists (n = 19). Remnants of conserved forests were surveyed to access ecological information on tree species (three plots of 1,000 m2). Results included descriptive statistics, frequency and Smith’s index of salience of the free-list results. Results The local population depends primarily on slash-and-burn subsistence agriculture to meet their needs. Interviewees showed a strong empirical knowledge about the environmental problems of the river, and of their causes, consequences and potential solutions. Twenty-four tree species (dbh > 10 cm) were found at the reference sites. Tree density averaged 510 individuals per hectare (stdv = 91.6); and 12 species were considered the most abundant (density > 10ind/ha). There was a strong consensus among plant-specialists about the most important trees. The species lists from reference sites and plant-specialists presented an important convergence. Conclusions Slash-and-burn agriculture is the main source of livelihood but also the main driver of forest degradation. Effective restoration approaches must transform problems into solutions by empowering local people. Successional agroforestry combining annual crops and trees may be a suitable transitional phase for restoration. The model must be designed collectively and include species of ecological, cultural, and socioeconomic value. In deprived communities of the Amazon, forest restoration must be a process that combines environmental and social gains. PMID:24468421

Habitat Association, Size, Stomach Contents, and Reproductive Condition of Puerto Rican Boas (Epicrates inornatus)

Treesearch

JAMES W. WILEY

2003-01-01

The Puerto Rican boa occurs in a variety of habitats, including wet montane forest, lowland wet forest, mangrove forest, wet limestone karst, and offshore cays, and from sea level to 480 m. Mean SVL of 49 encountered boas (live and road-killed) was 136.9 ± 35.1 (range = 38.8–205 cm), with a mean mass of 952.1 ± 349.0 g (n = 47; range = 140–1662 g). Prey in digestive...

Boa constrictor (Boa constrictor): foraging behavior

USGS Publications Warehouse

Sorrell, G.G.; Boback, M.S.; Reed, R.N.; Green, S.; Montgomery, Chad E.; DeSouza, L.S.; Chiaraviglio, M.

2011-01-01

Boa constrictor is often referred to as a sit-and-wait or ambush forager that chooses locations to maximize the likelihood of prey encounters (Greene 1983. In Janzen [ed.], Costa Rica Natural History, pp. 380-382. Univ. Chicago Press, Illinois). However, as more is learned about the natural history of snakes in general, the dichotomy between active versus ambush foraging is becoming blurred. Herein, we describe an instance of diurnal active foraging by a B. constrictor, illustrating that this species exhibits a range of foraging behaviors.

Vapor Pressure Deficit and Sap Velocity Dynamic Coupling in Canopy Dominant Trees in the Amazon basin

NASA Astrophysics Data System (ADS)

Chambers, J. Q.; Gimenez, B.; Jardine, K.; Negron Juarez, R. I.; Cobello, L. O.; Fontes, C.; Dawson, T. E.; Higuchi, N.

2017-12-01

In order to improve our ability to predict terrestrial water fluxes, an understanding of the interactions between plant physiology and environmental conditions is necessary, especially in tropical forests which recycle large fluxes of water to the atmosphere. This need has become more relevant due to observed records in global temperature. In this study we show a strong temporal correlation between sap velocity and leaf-to-air vapor pressure deficit (VPD) in canopy dominant trees in two primary rainforest sites in the Amazon basin (Santarém and Manaus, Brazil). As VPDs in the upper canopy (20-30 m) varied throughout the day and night, basal sap velocity (1.5 m) responded rapidly without an observable delay (< 15 min). Sap velocity showed a sigmoidal dependence on VPDs including an exponential increase, an inflection point, and a plateau, in all observed trees. Moreover, a clear diurnal hysteresis in sap velocity, stomatal conductance, and leaf water potential was evident with morning periods showing higher sensitivities to VPD than afternoon and night periods. Diurnal leaf gas exchange observations revealed a morning to midday peak in stomatal conductance, but midday to afternoon peak in transpiration and VPD. Thus, our study confirms that the temporal lag between the Gs peak and VPD peak are the major regulators of the hysteresis phenomenon as previously described by other studies. Moreover, out study provide direct evidence for the role of decreased stomatal conductance in the warm afternoon periods to reduce transpiration and allow for the partial recovery of leaf water potential to less negative values. Our results suggests the possibility of predicting evapotranspiration fluxes from ecosystem to regional scales using remote sensing of vegetation temperature from, for example, thermal images of satellites and drones.

Herbivores promote habitat specialization by trees in Amazonian forests.

PubMed

Fine, Paul V A; Mesones, Italo; Coley, Phyllis D

2004-07-30

In an edaphically heterogeneous area in the Peruvian Amazon, clay soils and nutrient-poor white sands each harbor distinctive plant communities. To determine whether a trade-off between growth and antiherbivore defense enforces habitat specialization on these two soil types, we conducted a reciprocal transplant study of seedlings of 20 species from six genera of phylogenetically independent pairs of edaphic specialist trees and manipulated the presence of herbivores. Clay specialist species grew significantly faster than white-sand specialists in both soil types when protected from herbivores. However, when unprotected, white-sand specialists dominated in white-sand forests and clay specialists dominated in clay forests. Therefore, habitat specialization in this system results from an interaction of herbivore pressure with soil type.

Detection of nidoviruses in live pythons and boas.

PubMed

Marschang, Rachel E; Kolesnik, Ekaterina

2017-02-09

Nidoviruses have recently been described as a putative cause of severe respiratory disease in pythons in the USA and Europe. The objective of this study was to establish the use of a conventional PCR for the detection of nidoviruses in samples from live animals and to extend the list of susceptible species. A PCR targeting a portion of ORF1a of python nidoviruses was used to detect nidoviruses in diagnostic samples from live boas and pythons. A total of 95 pythons, 84 boas and 22 snakes of unknown species were included in the study. Samples tested included oral swabs and whole blood. Nidoviruses were detected in 27.4% of the pythons and 2.4% of the boas tested. They were most commonly detected in ball pythons (Python [P.] regius) and Indian rock pythons (P. molurus), but were also detected for the first time in other python species, including Morelia spp. and Boa constrictor. Oral swabs were most commonly tested positive. The PCR described here can be used for the detection of nidoviruses in oral swabs from live snakes. These viruses appear to be relatively common among snakes in captivity in Europe and screening for these viruses should be considered in the clinical work-up. Nidoviruses are believed to be an important cause of respiratory disease in pythons, but can also infect boas. Detection of these viruses in live animals is now possible and can be of interest both in diseased animals as well as in quarantine situations.

Generation of Anti-Boa Immunoglobulin Antibodies for Serodiagnostic Applications, and Their Use to Detect Anti-Reptarenavirus Antibodies in Boa Constrictor.

PubMed

Korzyukov, Yegor; Hetzel, Udo; Kipar, Anja; Vapalahti, Olli; Hepojoki, Jussi

2016-01-01

Immunoglobulins (Igs), the key effectors of the adaptive immune system, mediate the specific recognition of foreign structures, i.e. antigens. In mammals, IgM production commonly precedes the production of IgG in the response to an infection. The reptilian counterpart of IgG is IgY, but the exact kinetics of the reptilian immune response are less well known. Boid inclusion body disease (BIBD), an often fatal disease of captive boas and pythons has been linked to reptarenavirus infection, and BIBD is believed to be immunosuppressive. However, so far, the study of the serological response towards reptarenaviruses in BIBD has been hampered by the lack of reagents. Thus we set up a purification protocol for boa constrictor IgY and IgM, which should also be applicable for other snake species. We used centrifugal filter units, poly ethylene glycol precipitation and gel permeation chromatography to purify and separate the IgM and IgY fractions from boa constrictor serum, which we further used to immunise rabbits. We affinity purified IgM and IgY specific reagents from the produced antiserum, and labelled the reagents with horseradish peroxidase. Finally, using the sera of snakes with known exposure to reptarenaviruses we demonstrated that the newly generated reagents can be utilised for serodiagnostic purposes, such as immunoblotting and immunofluorescent staining. To our knowledge, this is the first report to show reptarenavirus-specific antibodies in boa constrictors.

Generation of Anti-Boa Immunoglobulin Antibodies for Serodiagnostic Applications, and Their Use to Detect Anti-Reptarenavirus Antibodies in Boa Constrictor

PubMed Central

Korzyukov, Yegor; Hetzel, Udo; Kipar, Anja; Vapalahti, Olli; Hepojoki, Jussi

2016-01-01

Immunoglobulins (Igs), the key effectors of the adaptive immune system, mediate the specific recognition of foreign structures, i.e. antigens. In mammals, IgM production commonly precedes the production of IgG in the response to an infection. The reptilian counterpart of IgG is IgY, but the exact kinetics of the reptilian immune response are less well known. Boid inclusion body disease (BIBD), an often fatal disease of captive boas and pythons has been linked to reptarenavirus infection, and BIBD is believed to be immunosuppressive. However, so far, the study of the serological response towards reptarenaviruses in BIBD has been hampered by the lack of reagents. Thus we set up a purification protocol for boa constrictor IgY and IgM, which should also be applicable for other snake species. We used centrifugal filter units, poly ethylene glycol precipitation and gel permeation chromatography to purify and separate the IgM and IgY fractions from boa constrictor serum, which we further used to immunise rabbits. We affinity purified IgM and IgY specific reagents from the produced antiserum, and labelled the reagents with horseradish peroxidase. Finally, using the sera of snakes with known exposure to reptarenaviruses we demonstrated that the newly generated reagents can be utilised for serodiagnostic purposes, such as immunoblotting and immunofluorescent staining. To our knowledge, this is the first report to show reptarenavirus-specific antibodies in boa constrictors. PMID:27355360

Surface Soil Changes Following Selective Logging in an Eastern Amazon Forest

NASA Technical Reports Server (NTRS)

Olander, Lydia P.; Bustamante, Mercedes M.; Asner, Gregory P.; Telles, Everaldo; Prado, Zayra; Camargo, Plinio B.

2005-01-01

In the Brazilian Amazon, selective logging is second only to forest conversion in its extent. Conversion to pasture or agriculture tends to reduce soil nutrients and site productivity over time unless fertilizers are added. Logging removes nutrients in bole wood, enough that repeated logging could deplete essential nutrients over time. After a single logging event, nutrient losses are likely to be too small to observe in the large soil nutrient pools, but disturbances associated with logging also alter soil properties. Selective logging, particularly reduced-impact logging, results in consistent patterns of disturbance that may be associated with particular changes in soil properties. Soil bulk density, pH, carbon (C), nitrogen (N), phosphorus (P), calcium (Ca), magnesium (Mg), potassium (K), iron (Fe), aluminum (Al), delta(sup 3)C, delta(sup 15)N, and P fractionations were measured on the soils of four different types of loggingrelated disturbances: roads, decks, skids, and treefall gaps. Litter biomass and percent bare ground were also determined in these areas. To evaluate the importance of fresh foliage inputs from downed tree crowns in treefall gaps, foliar nutrients for mature forest trees were also determined and compared to that of fresh litterfall. The immediate impacts of logging on soil properties and how these might link to the longer-term estimated nutrient losses and the observed changes in soils were studied.

Ancient human disturbances may be skewing our understanding of Amazonian forests.

PubMed

McMichael, Crystal N H; Matthews-Bird, Frazer; Farfan-Rios, William; Feeley, Kenneth J

2017-01-17

Although the Amazon rainforest houses much of Earth's biodiversity and plays a major role in the global carbon budget, estimates of tree biodiversity originate from fewer than 1,000 forest inventory plots, and estimates of carbon dynamics are derived from fewer than 200 recensus plots. It is well documented that the pre-European inhabitants of Amazonia actively transformed and modified the forest in many regions before their population collapse around 1491 AD; however, the impacts of these ancient disturbances remain entirely unaccounted for in the many highly influential studies using Amazonian forest plots. Here we examine whether Amazonian forest inventory plot locations are spatially biased toward areas with high probability of ancient human impacts. Our analyses reveal that forest inventory plots, and especially forest recensus plots, in all regions of Amazonia are located disproportionately near archaeological evidence and in areas likely to have ancient human impacts. Furthermore, regions of the Amazon that are relatively oversampled with inventory plots also contain the highest values of predicted ancient human impacts. Given the long lifespan of Amazonian trees, many forest inventory and recensus sites may still be recovering from past disturbances, potentially skewing our interpretations of forest dynamics and our understanding of how these forests are responding to global change. Empirical data on the human history of forest inventory sites are crucial for determining how past disturbances affect modern patterns of forest composition and carbon flux in Amazonian forests.

Differential Disease Susceptibilities in Experimentally Reptarenavirus-Infected Boa Constrictors and Ball Pythons

PubMed Central

Sanchez-Migallon Guzman, David; Garcia, Valentina E.; Layton, Marylee L.; Hoon-Hanks, Laura L.; Boback, Scott M.; Keel, M. Kevin; Drazenovich, Tracy

2017-01-01

ABSTRACT Inclusion body disease (IBD) is an infectious disease originally described in captive snakes. It has traditionally been diagnosed by the presence of large eosinophilic cytoplasmic inclusions and is associated with neurological, gastrointestinal, and lymphoproliferative disorders. Previously, we identified and established a culture system for a novel lineage of arenaviruses isolated from boa constrictors diagnosed with IBD. Although ample circumstantial evidence suggested that these viruses, now known as reptarenaviruses, cause IBD, there has been no formal demonstration of disease causality since their discovery. We therefore conducted a long-term challenge experiment to test the hypothesis that reptarenaviruses cause IBD. We infected boa constrictors and ball pythons by cardiac injection of purified virus. We monitored the progression of viral growth in tissues, blood, and environmental samples. Infection produced dramatically different disease outcomes in snakes of the two species. Ball pythons infected with Golden Gate virus (GoGV) and with another reptarenavirus displayed severe neurological signs within 2 months, and viral replication was detected only in central nervous system tissues. In contrast, GoGV-infected boa constrictors remained free of clinical signs for 2 years, despite high viral loads and the accumulation of large intracellular inclusions in multiple tissues, including the brain. Inflammation was associated with infection in ball pythons but not in boa constrictors. Thus, reptarenavirus infection produces inclusions and inclusion body disease, although inclusions per se are neither necessarily associated with nor required for disease. Although the natural distribution of reptarenaviruses has yet to be described, the different outcomes of infection may reflect differences in geographical origin. IMPORTANCE New DNA sequencing technologies have made it easier than ever to identify the sequences of microorganisms in diseased tissues, i.e., to identify organisms that appear to cause disease, but to be certain that a candidate pathogen actually causes disease, it is necessary to provide additional evidence of causality. We have done this to demonstrate that reptarenaviruses cause inclusion body disease (IBD), a serious transmissible disease of snakes. We infected boa constrictors and ball pythons with purified reptarenavirus. Ball pythons fell ill within 2 months of infection and displayed signs of neurological disease typical of IBD. In contrast, boa constrictors remained healthy over 2 years, despite high levels of virus throughout their bodies. This difference matches previous reports that pythons are more susceptible to IBD than boas and could reflect the possibility that boas are natural hosts of these viruses in the wild. PMID:28515291

Phylogeny of Amazona barbadensis and the Yellow-headed Amazon complex (Aves: Psittacidae): a new look at South American parrot evolution.

PubMed

Urantówka, Adam Dawid; Mackiewicz, Paweł; Strzała, Tomasz

2014-01-01

The Yellow-shouldered Amazon (Amazona barbadensis) is the sole parrot of the genus Amazona that inhabits only dry forests. Its population has been dropping; therefore it has been the topic of many studies and conservation efforts. However, the phylogenetic relationship of this species to potential relatives classified within the Yellow-Headed Amazon (YHA) complex are still not clear. Therefore, we used more extensive data sets, including the newly sequenced mitochondrial genome of A. barbadensis, to conduct phylogenetic analyses. Various combinations of genes and many phylogenetic approaches showed that A. barbadensis clustered significantly with A. ochrocephala ochrocephala from Colombia and Venezuela, which created the Northern South American (NSA) lineage, clearly separated from two other lineages within the YHA complex, the Central (CA) and South American (SA). Tree topology tests and exclusion of rapidly evolving sites provided support for a NSA+SA grouping. We propose an evolutionary scenario for the YHA complex and its colonization of the American mainland. The NSA lineage likely represents the most ancestral lineage, which derived from Lesser Antillean Amazons and colonized the northern coast of Venezuela about a million years ago. Then, Central America was colonized through the Isthmus of Panama, which led to the emergence of the CA lineage. The southward expansion to South America and the origin of the SA lineage happened almost simultaneously. However, more intensive or prolonged gene flow or migrations have led to much weaker geographic differentiation of genetic markers in the SA than in the CA lineage.

Phylogeny of Amazona barbadensis and the Yellow-Headed Amazon Complex (Aves: Psittacidae): A New Look at South American Parrot Evolution

PubMed Central

Strzała, Tomasz

2014-01-01

The Yellow-shouldered Amazon (Amazona barbadensis) is the sole parrot of the genus Amazona that inhabits only dry forests. Its population has been dropping; therefore it has been the topic of many studies and conservation efforts. However, the phylogenetic relationship of this species to potential relatives classified within the Yellow-Headed Amazon (YHA) complex are still not clear. Therefore, we used more extensive data sets, including the newly sequenced mitochondrial genome of A. barbadensis, to conduct phylogenetic analyses. Various combinations of genes and many phylogenetic approaches showed that A. barbadensis clustered significantly with A. ochrocephala ochrocephala from Colombia and Venezuela, which created the Northern South American (NSA) lineage, clearly separated from two other lineages within the YHA complex, the Central (CA) and South American (SA). Tree topology tests and exclusion of rapidly evolving sites provided support for a NSA+SA grouping. We propose an evolutionary scenario for the YHA complex and its colonization of the American mainland. The NSA lineage likely represents the most ancestral lineage, which derived from Lesser Antillean Amazons and colonized the northern coast of Venezuela about a million years ago. Then, Central America was colonized through the Isthmus of Panama, which led to the emergence of the CA lineage. The southward expansion to South America and the origin of the SA lineage happened almost simultaneously. However, more intensive or prolonged gene flow or migrations have led to much weaker geographic differentiation of genetic markers in the SA than in the CA lineage. PMID:24823658

Environmental manipulation for edible insect procurement: a historical perspective.

PubMed

Van Itterbeeck, Joost; van Huis, Arnold

2012-01-21

Throughout history humans have manipulated their natural environment for an increased predictability and availability of plant and animal resources. Research on prehistoric diets increasingly includes small game, but edible insects receive minimal attention. Using the anthropological and archaeological literature we show and hypothesize about the existence of such environmental manipulations related to the procurement of edible insects. As examples we use eggs of aquatic Hemiptera in Mexico which are semi-cultivated by water management and by providing egg laying sites; palm weevil larvae in the Amazon Basin, tropical Africa, and New Guinea of which the collection is facilitated by manipulating host tree distribution and abundance and which are semi-cultivated by deliberately cutting palm trees at a chosen time at a chosen location; and arboreal, foliage consuming caterpillars in sub-Saharan Africa for which the collection is facilitated by manipulating host tree distribution and abundance, shifting cultivation, fire regimes, host tree preservation, and manually introducing caterpillars to a designated area. These manipulations improve insect exploitation by increasing their predictability and availability, and most likely have an ancient origin.

Environmental manipulation for edible insect procurement: a historical perspective

PubMed Central

2012-01-01

Throughout history humans have manipulated their natural environment for an increased predictability and availability of plant and animal resources. Research on prehistoric diets increasingly includes small game, but edible insects receive minimal attention. Using the anthropological and archaeological literature we show and hypothesize about the existence of such environmental manipulations related to the procurement of edible insects. As examples we use eggs of aquatic Hemiptera in Mexico which are semi-cultivated by water management and by providing egg laying sites; palm weevil larvae in the Amazon Basin, tropical Africa, and New Guinea of which the collection is facilitated by manipulating host tree distribution and abundance and which are semi-cultivated by deliberately cutting palm trees at a chosen time at a chosen location; and arboreal, foliage consuming caterpillars in sub-Saharan Africa for which the collection is facilitated by manipulating host tree distribution and abundance, shifting cultivation, fire regimes, host tree preservation, and manually introducing caterpillars to a designated area. These manipulations improve insect exploitation by increasing their predictability and availability, and most likely have an ancient origin. PMID:22264307

Light-driven growth in Amazon evergreen forests explained by seasonal variations of vertical canopy structure.

PubMed

Tang, Hao; Dubayah, Ralph

2017-03-07

Light-regime variability is an important limiting factor constraining tree growth in tropical forests. However, there is considerable debate about whether radiation-induced green-up during the dry season is real, or an apparent artifact of the remote-sensing techniques used to infer seasonal changes in canopy leaf area. Direct and widespread observations of vertical canopy structures that drive radiation regimes have been largely absent. Here we analyze seasonal dynamic patterns between the canopy and understory layers in Amazon evergreen forests using observations of vertical canopy structure from a spaceborne lidar. We discovered that net leaf flushing of the canopy layer mainly occurs in early dry season, and is followed by net abscission in late dry season that coincides with increasing leaf area of the understory layer. Our observations of understory development from lidar either weakly respond to or are not correlated to seasonal variations in precipitation or insolation, but are strongly related to the seasonal structural dynamics of the canopy layer. We hypothesize that understory growth is driven by increased light gaps caused by seasonal variations of the canopy. This light-regime variability that exists in both spatial and temporal domains can better reveal the drought-induced green-up phenomenon, which appears less obvious when treating the Amazon forests as a whole.

Predicting the response of the Amazon rainforest to persistent drought conditions under current and future climates: a major challenge for global land surface models

NASA Astrophysics Data System (ADS)

Joetzjer, E.; Delire, C.; Douville, H.; Ciais, P.; Decharme, B.; Fisher, R.; Christoffersen, B.; Calvet, J. C.; da Costa, A. C. L.; Ferreira, L. V.; Meir, P.

2014-08-01

While a majority of Global Climate Models project dryer and longer dry seasons over the Amazon under higher CO2 levels, large uncertainties surround the response of vegetation to persistent droughts in both present-day and future climates. We propose a detailed evaluation of the ability of the ISBACC Land Surface Model to capture drought effects on both water and carbon budgets, comparing fluxes and stocks at two recent ThroughFall Exclusion (TFE) experiments performed in the Amazon. We also explore the model sensitivity to different Water Stress Function (WSF) and to an idealized increase in CO2 concentration and/or temperature. In spite of a reasonable soil moisture simulation, ISBACC struggles to correctly simulate the vegetation response to TFE whose amplitude and timing is highly sensitive to the WSF. Under higher CO2 concentration, the increased Water Use Efficiency (WUE) mitigates the ISBACC's sensitivity to drought. While one of the proposed WSF formulation improves the response of most ISBACC fluxes, except respiration, a parameterization of drought-induced tree mortality is missing for an accurate estimate of the vegetation response. Also, a better mechanistic understanding of the forest responses to drought under a warmer climate and higher CO2 concentration is clearly needed.

CASL L1 Milestone report : CASL.P4.01, sensitivity and uncertainty analysis for CIPS with VIPRE-W and BOA.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sung, Yixing; Adams, Brian M.; Secker, Jeffrey R.

2011-12-01

The CASL Level 1 Milestone CASL.P4.01, successfully completed in December 2011, aimed to 'conduct, using methodologies integrated into VERA, a detailed sensitivity analysis and uncertainty quantification of a crud-relevant problem with baseline VERA capabilities (ANC/VIPRE-W/BOA).' The VUQ focus area led this effort, in partnership with AMA, and with support from VRI. DAKOTA was coupled to existing VIPRE-W thermal-hydraulics and BOA crud/boron deposit simulations representing a pressurized water reactor (PWR) that previously experienced crud-induced power shift (CIPS). This work supports understanding of CIPS by exploring the sensitivity and uncertainty in BOA outputs with respect to uncertain operating and model parameters. Thismore » report summarizes work coupling the software tools, characterizing uncertainties, and analyzing the results of iterative sensitivity and uncertainty studies. These studies focused on sensitivity and uncertainty of CIPS indicators calculated by the current version of the BOA code used in the industry. Challenges with this kind of analysis are identified to inform follow-on research goals and VERA development targeting crud-related challenge problems.« less

Economic Impact Forecast System (EIFS) II: User’s Manual. Updated Edition.

DTIC Science & Technology

1984-05-01

vermillion, in utica ny bea 18167 viga, in bOO bea 36011 cayuga. ny texarkana tx boa 36023 cortland, ny texarkana bea 36033 franklin, ny b119 bea...f1 48343 morris, tx 167 *.1• ’ texarkana tx boa (cont) tulsa ok boa (cont) 48387 red river, tx 40117 pawn*@, ok 48449 titus, tx 40119 payne, ok 40131...smsa texarkana ar smsa s7920 smsa texarkana tx smsa 29043 christian, ma texarkana sinsa 29077 green&, ma s8360 smsa 05081 little river, ar springfield

Quantifying long-term changes in carbon stocks and forest structure from Amazon forest degradation

NASA Astrophysics Data System (ADS)

Rappaport, Danielle I.; Morton, Douglas C.; Longo, Marcos; Keller, Michael; Dubayah, Ralph; Nara dos-Santos, Maiza

2018-06-01

Despite sustained declines in Amazon deforestation, forest degradation from logging and fire continues to threaten carbon stocks, habitat, and biodiversity in frontier forests along the Amazon arc of deforestation. Limited data on the magnitude of carbon losses and rates of carbon recovery following forest degradation have hindered carbon accounting efforts and contributed to incomplete national reporting to reduce emissions from deforestation and forest degradation (REDD+). We combined annual time series of Landsat imagery and high-density airborne lidar data to characterize the variability, magnitude, and persistence of Amazon forest degradation impacts on aboveground carbon density (ACD) and canopy structure. On average, degraded forests contained 45.1% of the carbon stocks in intact forests, and differences persisted even after 15 years of regrowth. In comparison to logging, understory fires resulted in the largest and longest-lasting differences in ACD. Heterogeneity in burned forest structure varied by fire severity and frequency. Forests with a history of one, two, and three or more fires retained only 54.4%, 25.2%, and 7.6% of intact ACD, respectively, when measured after a year of regrowth. Unlike the additive impact of successive fires, selective logging before burning did not explain additional variability in modeled ACD loss and recovery of burned forests. Airborne lidar also provides quantitative measures of habitat structure that can aid the estimation of co-benefits of avoided degradation. Notably, forest carbon stocks recovered faster than attributes of canopy structure that are critical for biodiversity in tropical forests, including the abundance of tall trees. We provide the first comprehensive look-up table of emissions factors for specific degradation pathways at standard reporting intervals in the Amazon. Estimated carbon loss and recovery trajectories provide an important foundation for assessing the long-term contributions from forest degradation to regional carbon cycling and advance our understanding of the current state of frontier forests.

Integrating the avoidance of forest degradation into systematic conservation planning in the Eastern Amazon

NASA Astrophysics Data System (ADS)

Ferreira, J.; Barlow, J.; Thompson, J.; Berenguer, E.; Aragão, L. E.; Lees, A.; Lennox, G.; Brancalion, P.; Ferraz, S.; Moura, N.; Oliveira, V. H.; Louzada, J.; Solar, R.; Nunes, S.; Parry, L.; Fonseca, T.; Garrett, R.; Vieira, I.; MacNally, R.; Gardner, T.

2017-12-01

Undisturbed forests are becoming increasingly rare in the tropics. The area of forest degraded by some form of disturbance, such as logging or fire, in the Brazilian Amazon now greatly exceeds that which had been deforested. Yet forest policy in the Amazon, as elsewhere in the tropics, remains overwhelmingly focused curbing the rate of forest loss without considering impacts on forest quality. We use a unique data set from the Sustainable Amazon Network (RAS), in the eastern Brazilian Amazon to assess the impacts of forest disturbance on biodiversity and assess the benefits of including avoided degradation measures in conservation planning. Biodiversity data on trees and fauna from two large regions, Santarém and Paragominas, were combined with remote sensing data to model biodiversity patterns as well as estimates of above-ground carbon stocks across a range of land-use types and forest conditions. We found that impact of forest disturbance on biodiversity loss in the state of Pará equates to double that lost from deforestation alone, -the equivalent of losing 92,000-139,000 km2 of primary forest. We found a strong positive relationship between increasing carbon stocks and higher biodiversity in varyingly disturbed forests. Simulations demonstrated that a carbon-focused conservation strategy is least effective at conserving biodiversity in the least disturbed forests, highlighting the importance of on-the-ground biodiversity surveys to prioritise conservation investments in the most species rich forests. We explored trade-offs among management actions to guide priorities for habitat protection, avoided degradation and restoration and found that where restoration imposes significant opportunity and implementation costs, efforts to avoid and reverse the degradation of existing forests can deliver greater returns on investment for biodiversity conservation. Systemic planning of forest management options at regional scales can substantially improve biodiversity outcomes while greatly reducing costs and risks. These results provide new and valuable information for regulators, conservation practitioners and landowners in this biologically unique region.

Computed tomography-guided bone biopsies for evaluation of proliferative vertebral lesions in two boa constrictors (Boa constrictor imperator).

PubMed

Di Girolamo, Nicola; Selleri, Paolo; Nardini, Giordano; Corlazzoli, Daniele; Fonti, Paolo; Rossier, Christophe; Della Salda, Leonardo; Schilliger, Lionel; Vignoli, Massimo; Bongiovanni, Laura

2014-12-01

Two boa constrictors (Boa constrictor imperator) presented with paresis of the trunk originating cranial to the cloaca. Radiographs were consistent with proliferative bone lesions involving several vertebrae. Computed tomography (CT) demonstrated the presence of lytic/expansile lesions. Computed tomography-guided biopsies of the lesions were performed without complications. Histology was consistent with bacterial osteomyelitis and osteoarthritis. Gram-negative bacteria (Salmonella sp. and Pseudomonas sp.) were isolated from cultures of the biopsies. Medical treatment with specific antibiotics was attempted for several weeks in both cases without clinical or radiographic improvements. The animals were euthanized, and necropsy confirmed the findings observed upon CT. To the authors' knowledge, this is the first report of the use of CT-guided biopsies to evaluate proliferative vertebral lesions in snakes. In the present report, CT-guided biopsies were easily performed, and both histologic and microbiologic results were consistent with the final diagnosis.

Global Climate Change (GCC) Issues and Their Impacts on the US Army Corps of Engineers

DTIC Science & Technology

1991-11-01

Amazon River flow. At first this flow was channeled down the Mississippi River to the Gulf of Mexico: "... about 11,000 years ago, however, a major...Foraminifera ( fossil evidence of microorganisms that inhabit water masses of specific temperature and salinity) from surface waters of the Gulf of...records can be tied into tree ring records (both current and fossilized ) to produce an accurate record for the last 8,200 years. This type of study is

"Handbook of biomedical optics", edited by David A. Boas, Constantinos Pitris, and Nimmi Ramanujam

PubMed Central

2012-01-01

David A. Boas, Constantinos Pitris, and Nimmi Ramanujam, Eds.: Handbook of Biomedical Optics CRC Press, Taylor and Francis Group, Boca Raton, London, New York, 2011 ISBN: 978-1-4200-9036-9 (Hardback), 787 pages

76 FR 40082 - Semiannual Regulatory Agenda

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-07

...; Constrictor Species From Python, Boa, and Eunectes Genera. Bureau of Ocean Energy Management, Regulation, and... Wildlife Evaluation; Constrictor Species from Python, Boa, and Eunectes Genera Legal Authority: 18 U.S.C... are: Indian python (including Burmese python), reticulated python, Northern African python, Southern...

Tank 12H Acidic Chemical Cleaning Sample Analysis And Material Balance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martino, C. J.; Reboul, S. H.; Wiersma, B. J.

2013-11-08

A process of Bulk Oxalic Acid (BOA) chemical cleaning was performed for Tank 12H during June and July of 2013 to remove all or a portion of the approximately 4400 gallon sludge heel. Three strikes of oxalic acid (nominally 4 wt% or 2 wt%) were used at 55°C and tank volumes of 96- to 140-thousand gallons. This report details the sample analysis of a scrape sample taken prior to BOA cleaning and dip samples taken during BOA cleaning. It also documents a rudimentary material balance for the Tank 12H cleaning results.

77 FR 7968 - Semiannual Regulatory Agenda

Federal Register 2010, 2011, 2012, 2013, 2014

2012-02-13

...; Constrictor Species From Python, Boa, and Eunectes Genera. National Park Service--Proposed Rule Stage... Evaluation; Constrictor Species From Python, Boa, and Eunectes Genera Legal Authority: 18 U.S.C. 42 Abstract... wildlife under the Lacey Act: Indian python (including Burmese python), reticulated python, Northern...

Logging concessions enable illegal logging crisis in the Peruvian Amazon.

PubMed

Finer, Matt; Jenkins, Clinton N; Sky, Melissa A Blue; Pine, Justin

2014-04-17

The Peruvian Amazon is an important arena in global efforts to promote sustainable logging in the tropics. Despite recent efforts to achieve sustainability, such as provisions in the US-Peru Trade Promotion Agreement, illegal logging continues to plague the region. We present evidence that Peru's legal logging concession system is enabling the widespread illegal logging via the regulatory documents designed to ensure sustainable logging. Analyzing official government data, we found that 68.3% of all concessions supervised by authorities were suspected of major violations. Of the 609 total concessions, nearly 30% have been cancelled for violations and we expect this percentage to increase as investigations continue. Moreover, the nature of the violations indicate that the permits associated with legal concessions are used to harvest trees in unauthorized areas, thus threatening all forested areas. Many of the violations pertain to the illegal extraction of CITES-listed timber species outside authorized areas. These findings highlight the need for additional reforms.

Climate drivers of the Amazon forest greening.

PubMed

Wagner, Fabien Hubert; Hérault, Bruno; Rossi, Vivien; Hilker, Thomas; Maeda, Eduardo Eiji; Sanchez, Alber; Lyapustin, Alexei I; Galvão, Lênio Soares; Wang, Yujie; Aragão, Luiz E O C

2017-01-01

Our limited understanding of the climate controls on tropical forest seasonality is one of the biggest sources of uncertainty in modeling climate change impacts on terrestrial ecosystems. Combining leaf production, litterfall and climate observations from satellite and ground data in the Amazon forest, we show that seasonal variation in leaf production is largely triggered by climate signals, specifically, insolation increase (70.4% of the total area) and precipitation increase (29.6%). Increase of insolation drives leaf growth in the absence of water limitation. For these non-water-limited forests, the simultaneous leaf flush occurs in a sufficient proportion of the trees to be observed from space. While tropical cycles are generally defined in terms of dry or wet season, we show that for a large part of Amazonia the increase in insolation triggers the visible progress of leaf growth, just like during spring in temperate forests. The dependence of leaf growth initiation on climate seasonality may result in a higher sensitivity of these ecosystems to changes in climate than previously thought.

Diversity of anti-haemostatic proteins in the salivary glands of Rhodnius species transmitters of Chagas disease in the greater Amazon.

PubMed

Bussacos, Ana C M; Nakayasu, Ernesto S; Hecht, Mariana M; Parente, Juliana A; Soares, Célia M A; Teixeira, Antônio R L; Almeida, Igor C

2011-08-24

The triatomines in the tribe Rhodniini are the main vectors of the Trypanosoma cruzi to humans in recent outbreaks of acute Chagas disease in the Amazon. These insects dwelling in palm trees do not colonize the human domicile. Their success to transmit the infection relies partially on the efficacy of their salivary gland apparatuses. Here we show the transcriptome of the Rhodnius brethesi and Rhodnius robustus salivary glands, comprising 56 and 122 clusters, respectively. Approximately one third of these clusters are described for the first time. The LC-MS/MS analysis identified 123 and 111 proteins in R. brethesi and R. robustus sialome, respectively. Noteworthy, lipocalin platelet aggregation inhibitors, inositol polyphosphate 5-phosphatases, and Kazal domain proteins, which are essential for the insect's successful acquisition of blood meals, were found in our analysis. Moreover, glutathione S transferase and antigen-5, which play roles in the insect's defense and resistance against insecticide, were also observed. Copyright © 2011 Elsevier B.V. All rights reserved.

Logging Concessions Enable Illegal Logging Crisis in the Peruvian Amazon

PubMed Central

Finer, Matt; Jenkins, Clinton N.; Sky, Melissa A. Blue; Pine, Justin

2014-01-01

The Peruvian Amazon is an important arena in global efforts to promote sustainable logging in the tropics. Despite recent efforts to achieve sustainability, such as provisions in the US–Peru Trade Promotion Agreement, illegal logging continues to plague the region. We present evidence that Peru's legal logging concession system is enabling the widespread illegal logging via the regulatory documents designed to ensure sustainable logging. Analyzing official government data, we found that 68.3% of all concessions supervised by authorities were suspected of major violations. Of the 609 total concessions, nearly 30% have been cancelled for violations and we expect this percentage to increase as investigations continue. Moreover, the nature of the violations indicate that the permits associated with legal concessions are used to harvest trees in unauthorized areas, thus threatening all forested areas. Many of the violations pertain to the illegal extraction of CITES-listed timber species outside authorized areas. These findings highlight the need for additional reforms. PMID:24743552

Logging Concessions Enable Illegal Logging Crisis in the Peruvian Amazon

NASA Astrophysics Data System (ADS)

Finer, Matt; Jenkins, Clinton N.; Sky, Melissa A. Blue; Pine, Justin

2014-04-01

The Peruvian Amazon is an important arena in global efforts to promote sustainable logging in the tropics. Despite recent efforts to achieve sustainability, such as provisions in the US-Peru Trade Promotion Agreement, illegal logging continues to plague the region. We present evidence that Peru's legal logging concession system is enabling the widespread illegal logging via the regulatory documents designed to ensure sustainable logging. Analyzing official government data, we found that 68.3% of all concessions supervised by authorities were suspected of major violations. Of the 609 total concessions, nearly 30% have been cancelled for violations and we expect this percentage to increase as investigations continue. Moreover, the nature of the violations indicate that the permits associated with legal concessions are used to harvest trees in unauthorized areas, thus threatening all forested areas. Many of the violations pertain to the illegal extraction of CITES-listed timber species outside authorized areas. These findings highlight the need for additional reforms.

Phthalocyanine-labeled LDL for tumor imaging and photodynamic therapy

NASA Astrophysics Data System (ADS)

Li, Hui; Marotta, Diane; Kim, Soungkyoo; Chance, Britton; Glickson, Jerry D.; Busch, Theresa M.; Zheng, Gang

2005-01-01

Current limitation of both near-infrared (NIR) tumor imaging and photodynamic therapy (PDT) is their lack of sufficient tumor-to-tissue contrast due to the relatively non-specific nature of delivering dye to the tumor, which has led to false negatives for NIR imaging and inadequate therapeutic ratio for PDT. Hence, agents targeting "cancer signatures", i.e. molecules that accumulate selectively in cancer cells, are particular attractive. One of these signatures is low-density-lipoprotein receptor (LDLR), which is overexpressed in many tumors. We have developed pyropheophorbide cholesterol oleate reconstituted LDL as a LDLR-targeting photosensitizer (PS) and demonstrated its LDLR-mediated uptake in vitro and in vivo. To improve the labeling efficiency for achieving high probe/protein ratio, tetra-t-butyl silicon phthalocyanine bearing two oleate moieties at its axial positions, (tBu)4SiPcBOA, was designed and synthesized. This compound was designed to 1) prevent the PS aggregation; 2) improve the PS solubility in non-polar solvent; and 3) maximize the PS binding to LDL phospholipid monolayer. Using this novel strategy, (tBu)4SiPcBOA was reconstituted into LDL (r-SiPcBOA-LDL) with a very high payload (500:1 molar ratio). In addition, (tBu)4SiPcBOA reconstituted acetylated LDL (r-SiPcBOA)-AcLDL with similar payload was also prepared. Since Ac-LDL cannot bind to LDLR, (r-SiPcBOA)-AcLDL can serve as the negative control to evaluate LDLR targeting specificity. For biological evaluation of these new agents, confocal microscopy and in vitro PDT protocols were performed using LDLR-overexpressing human hepatoblastoma G2 (HepG2) tumor model. These studies suggest that LDL serves as a delivery vehicle to bring large amount of the NIR/PDT agents selectively to tumor cells overexpressing LDLR.

Computer-based creativity enhanced conceptual design model for non-routine design of mechanical systems

NASA Astrophysics Data System (ADS)

Li, Yutong; Wang, Yuxin; Duffy, Alex H. B.

2014-11-01

Computer-based conceptual design for routine design has made great strides, yet non-routine design has not been given due attention, and it is still poorly automated. Considering that the function-behavior-structure(FBS) model is widely used for modeling the conceptual design process, a computer-based creativity enhanced conceptual design model(CECD) for non-routine design of mechanical systems is presented. In the model, the leaf functions in the FBS model are decomposed into and represented with fine-grain basic operation actions(BOA), and the corresponding BOA set in the function domain is then constructed. Choosing building blocks from the database, and expressing their multiple functions with BOAs, the BOA set in the structure domain is formed. Through rule-based dynamic partition of the BOA set in the function domain, many variants of regenerated functional schemes are generated. For enhancing the capability to introduce new design variables into the conceptual design process, and dig out more innovative physical structure schemes, the indirect function-structure matching strategy based on reconstructing the combined structure schemes is adopted. By adjusting the tightness of the partition rules and the granularity of the divided BOA subsets, and making full use of the main function and secondary functions of each basic structure in the process of reconstructing of the physical structures, new design variables and variants are introduced into the physical structure scheme reconstructing process, and a great number of simpler physical structure schemes to accomplish the overall function organically are figured out. The creativity enhanced conceptual design model presented has a dominant capability in introducing new deign variables in function domain and digging out simpler physical structures to accomplish the overall function, therefore it can be utilized to solve non-routine conceptual design problem.

Dimethyl sulfide in the Amazon rain forest: DMS in the Amazon

DOE PAGES

Jardine, K.; Yañez-Serrano, A. M.; Williams, J.; ...

2015-01-08

Surface-to-atmosphere emissions of dimethyl sulfide (DMS) may impact global climate 44 through the formation of gaseous sulfuric acid, which can yield secondary sulfate 45 aerosols and contribute to new particle formation. While oceans are generally 46 considered the dominant source of DMS, a shortage of ecosystem observations prevents 47 an accurate analysis of terrestrial DMS sources. Using mass spectrometry, we quantified 48 ambient DMS mixing ratios within and above a primary rainforest ecosystem in the 49 central Amazon Basin in real-time (2010-2011) and at high vertical resolution (2013-50 2014). Elevated but highly variable DMS mixing ratios were observed within themore » 51 canopy, showing clear evidence of a net ecosystem source to the atmosphere during 52 both day and night in both the dry and wet seasons. Periods of high DMS mixing ratios 53 lasting up to 8 hours (up to 160 ppt) often occurred within the canopy and near the 54 surface during many evenings and nights. Daytime gradients showed mixing ratios (up 55 to 80 ppt) peaking near the top of the canopy as well as near the ground following a rain 56 event. The spatial and temporal distribution of DMS suggests that ambient levels and 57 their potential climatic impacts are dominated by local soil and plant emissions. A soil 58 source was confirmed by measurements of DMS emission fluxes from Amazon soils as 59 a function of temperature and soil moisture. Furthermore, light and temperature 60 dependent DMS emissions were measured from seven tropical tree species. Our study 61 has important implications for understanding terrestrial DMS sources and their role in 62 coupled land-atmosphere climate feedbacks. 63« less

Distribution of Aboveground Live Biomass in the Amazon Basin

NASA Technical Reports Server (NTRS)

Saatchi, S. S.; Houghton, R. A.; DosSantos Alvala, R. C.; Soares, J. V.; Yu, Y.

2007-01-01

The amount and spatial distribution of forest biomass in the Amazon basin is a major source of uncertainty in estimating the flux of carbon released from land-cover and land-use change. Direct measurements of aboveground live biomass (AGLB) are limited to small areas of forest inventory plots and site-specific allometric equations that cannot be readily generalized for the entire basin. Furthermore, there is no spaceborne remote sensing instrument that can measure tropical forest biomass directly. To determine the spatial distribution of forest biomass of the Amazon basin, we report a method based on remote sensing metrics representing various forest structural parameters and environmental variables, and more than 500 plot measurements of forest biomass distributed over the basin. A decision tree approach was used to develop the spatial distribution of AGLB for seven distinct biomass classes of lowland old-growth forests with more than 80% accuracy. AGLB for other vegetation types, such as the woody and herbaceous savanna and secondary forests, was directly estimated with a regression based on satellite data. Results show that AGLB is highest in Central Amazonia and in regions to the east and north, including the Guyanas. Biomass is generally above 300Mgha(sup 1) here except in areas of intense logging or open floodplains. In Western Amazonia, from the lowlands of Peru, Ecuador, and Colombia to the Andean mountains, biomass ranges from 150 to 300Mgha(sup 1). Most transitional and seasonal forests at the southern and northwestern edges of the basin have biomass ranging from 100 to 200Mgha(sup 1). The AGLB distribution has a significant correlation with the length of the dry season. We estimate that the total carbon in forest biomass of the Amazon basin, including the dead and below ground biomass, is 86 PgC with +/- 20% uncertainty.

The importance of forest structure for carbon fluxes of the Amazon rainforest

NASA Astrophysics Data System (ADS)

Rödig, Edna; Cuntz, Matthias; Rammig, Anja; Fischer, Rico; Taubert, Franziska; Huth, Andreas

2018-05-01

Precise descriptions of forest productivity, biomass, and structure are essential for understanding ecosystem responses to climatic and anthropogenic changes. However, relations between these components are complex, in particular for tropical forests. We developed an approach to simulate carbon dynamics in the Amazon rainforest including around 410 billion individual trees within 7.8 million km2. We integrated canopy height observations from space-borne LIDAR in order to quantify spatial variations in forest state and structure reflecting small-scale to large-scale natural and anthropogenic disturbances. Under current conditions, we identified the Amazon rainforest as a carbon sink, gaining 0.56 GtC per year. This carbon sink is driven by an estimated mean gross primary productivity (GPP) of 25.1 tC ha‑1 a‑1, and a mean woody aboveground net primary productivity (wANPP) of 4.2 tC ha‑1 a‑1. We found that successional states play an important role for the relations between productivity and biomass. Forests in early to intermediate successional states are the most productive, and woody above-ground carbon use efficiencies are non-linear. Simulated values can be compared to observed carbon fluxes at various spatial resolutions (>40 m). Notably, we found that our GPP corresponds to the values derived from MODIS. For NPP, spatial differences can be observed due to the consideration of forest successional states in our approach. We conclude that forest structure has a substantial impact on productivity and biomass. It is an essential factor that should be taken into account when estimating current carbon budgets or analyzing climate change scenarios for the Amazon rainforest.

Predicting biomass of hyperdiverse and structurally complex central Amazonian forests - a virtual approach using extensive field data

DOE PAGES

Magnabosco Marra, Daniel; Higuchi, Niro; Trumbore, Susan E.; ...

2016-03-11

Notice on corrigendum: This paper has a corresponding corrigendum published. Please read the corrigendum first. Old-growth forests are subject to substantial changes in structure and species composition due to the intensification of human activities, gradual climate change and extreme weather events. Trees store ca. 90 % of the total aboveground biomass (AGB) in tropical forests and precise tree biomass estimation models are crucial for management and conservation. In the central Amazon, predicting AGB at large spatial scales is a challenging task due to the heterogeneity of successional stages, high tree species diversity and inherent variations in tree allometry and architecture.more » We parameterized generic AGB estimation models applicable across species and a wide range of structural and compositional variation related to species sorting into height layers as well as frequent natural disturbances. We used 727 trees (diameter at breast height ≥ 5 cm) from 101 genera and at least 135 species harvested in a contiguous forest near Manaus, Brazil. Sampling from this data set we assembled six scenarios designed to span existing gradients in floristic composition and size distribution in order to select models that best predict AGB at the landscape level across successional gradients. We found that good individual tree model fits do not necessarily translate into reliable predictions of AGB at the landscape level. When predicting AGB (dry mass) over scenarios using our different models and an available pantropical model, we observed systematic biases ranging from -31 % (pantropical) to +39 %, with root-mean-square error (RMSE) values of up to 130 Mg ha -1 (pantropical). Our first and second best models had both low mean biases (0.8 and 3.9 %, respectively) and RMSE (9.4 and 18.6 Mg ha -1) when applied over scenarios. Predicting biomass correctly at the landscape level in hyperdiverse and structurally complex tropical forests, especially allowing good performance at the margins of data availability for model construction/calibration, requires the inclusion of predictors that express inherent variations in species architecture. The model of interest should comprise the floristic composition and size-distribution variability of the target forest, implying that even generic global or pantropical biomass estimation models can lead to strong biases. Reliable biomass assessments for the Amazon basin (i.e., secondary forests) still depend on the collection of allometric data at the local/regional scale and forest inventories including species-specific attributes, which are often unavailable or estimated imprecisely in most regions.« less

Corrigendum to "Predicting biomass of hyperdiverse and structurally complex central Amazonian forests — a virtual approach using extensive field data" Published in Biogeosciences, 13, 1553-1570, 2016

DOE PAGES

Magnabosco Marra, Daniel; Higuchi, Niro; Trumbore, Susan E.; ...

2016-04-27

Old-growth forests are subject to substantial changes in structure and species composition due to the intensification of human activities, gradual climate change and extreme weather events. Trees store ca. 90% of the total aboveground biomass (AGB) in tropical forests and precise tree biomass estimation models are crucial for management and conservation. In the central Amazon, predicting AGB at large spatial scales is a challenging task due to the heterogeneity of successional stages, high tree species diversity and inherent variations in tree allometry and architecture. We parameterized generic AGB estimation models applicable across species and a wide range of structural andmore » compositional variation related to species sorting into height layers as well as frequent natural disturbances. We used 727 trees (diameter at breast height ≥5 cm) from 101 genera and at least 135 species harvested in a contiguous forest near Manaus, Brazil. Sampling from this data set we assembled six scenarios designed to span existing gradients in floristic composition and size distribution in order to select models that best predict AGB at the landscape level across successional gradients. We found that good individual tree model fits do not necessarily translate into reliable predictions of AGB at the landscape level. We observed systematic biases ranging from -31% (pantropical) to +39 %, with root-mean-square error (RMSE) values of up to 130-Mg ha -1 (pantropical), when predicting AGB (dry mass) over scenarios using our different models and an available pantropical model. Our first and second best models had both low mean biases (0.8 and 3.9 %, respectively) and RMSE (9.4 and 18.6 Mg ha -1) when applied over scenarios. Predicting biomass correctly at the landscape level in hyperdiverse and structurally complex tropical forests, especially allowing good performance at the margins of data availability for model construction/calibration, requires the inclusion of predictors that express inherent variations in species architecture. Furthermore, the model of interest should comprise the floristic composition and size-distribution variability of the target forest, implying that even generic global or pantropical biomass estimation models can lead to strong biases. Reliable biomass assessments for the Amazon basin (i.e., secondary forests) still depend on the collection of allometric data at the local/regional scale and forest inventories including species-specific attributes, which are often unavailable or estimated imprecisely in most regions.« less

Corrigendum to "Predicting biomass of hyperdiverse and structurally complex central Amazonian forests — a virtual approach using extensive field data" Published in Biogeosciences, 13, 1553-1570, 2016

DOE Office of Scientific and Technical Information (OSTI.GOV)

Magnabosco Marra, Daniel; Higuchi, Niro; Trumbore, Susan E.

Old-growth forests are subject to substantial changes in structure and species composition due to the intensification of human activities, gradual climate change and extreme weather events. Trees store ca. 90% of the total aboveground biomass (AGB) in tropical forests and precise tree biomass estimation models are crucial for management and conservation. In the central Amazon, predicting AGB at large spatial scales is a challenging task due to the heterogeneity of successional stages, high tree species diversity and inherent variations in tree allometry and architecture. We parameterized generic AGB estimation models applicable across species and a wide range of structural andmore » compositional variation related to species sorting into height layers as well as frequent natural disturbances. We used 727 trees (diameter at breast height ≥5 cm) from 101 genera and at least 135 species harvested in a contiguous forest near Manaus, Brazil. Sampling from this data set we assembled six scenarios designed to span existing gradients in floristic composition and size distribution in order to select models that best predict AGB at the landscape level across successional gradients. We found that good individual tree model fits do not necessarily translate into reliable predictions of AGB at the landscape level. We observed systematic biases ranging from -31% (pantropical) to +39 %, with root-mean-square error (RMSE) values of up to 130-Mg ha -1 (pantropical), when predicting AGB (dry mass) over scenarios using our different models and an available pantropical model. Our first and second best models had both low mean biases (0.8 and 3.9 %, respectively) and RMSE (9.4 and 18.6 Mg ha -1) when applied over scenarios. Predicting biomass correctly at the landscape level in hyperdiverse and structurally complex tropical forests, especially allowing good performance at the margins of data availability for model construction/calibration, requires the inclusion of predictors that express inherent variations in species architecture. Furthermore, the model of interest should comprise the floristic composition and size-distribution variability of the target forest, implying that even generic global or pantropical biomass estimation models can lead to strong biases. Reliable biomass assessments for the Amazon basin (i.e., secondary forests) still depend on the collection of allometric data at the local/regional scale and forest inventories including species-specific attributes, which are often unavailable or estimated imprecisely in most regions.« less

Spatial trends in leaf size of Amazonian rainforest trees

NASA Astrophysics Data System (ADS)

Malhado, A. C. M.; Malhi, Y.; Whittaker, R. J.; Ladle, R. J.; Ter Steege, H.; Aragão, L. E. O. C.; Quesada, C. A.; Araujo-Murakami, A.; Phillips, O. L.; Peacock, J.; Lopez-Gonzalez, G.; Baker, T. R.; Butt, N.; Anderson, L. O.; Arroyo, L.; Almeida, S.; Higuchi, N.; Killeen, T. J.; Monteagudo, A.; Neill, D.; Pitman, N.; Prieto, A.; Salomão, R. P.; Silva, N.; Vásquez-Martínez, R.; Laurance, W. F.

2009-02-01

Leaf size influences many aspects of tree function such as rates of transpiration and photosynthesis and, consequently, often varies in a predictable way in response to environmental gradients. The recent development of pan-Amazonian databases based on permanent botanical plots (e.g. RAINFOR, ATDN) has now made it possible to assess trends in leaf size across environmental gradients in Amazonia. Previous plot-based studies have shown that the community structure of Amazonian trees breaks down into at least two major ecological gradients corresponding with variations in soil fertility (decreasing south to northeast) and length of the dry season (increasing from northwest to south and east). Here we describe the results of the geographic distribution of leaf size categories based on 121 plots distributed across eight South American countries. We find that, as predicted, the Amazon forest is predominantly populated by tree species and individuals in the mesophyll size class (20.25-182.25 cm2). The geographic distribution of species and individuals with large leaves (>20.25 cm2) is complex but is generally characterized by a higher proportion of such trees in the north-west of the region. Spatially corrected regressions reveal weak correlations between the proportion of large-leaved species and metrics of water availability. We also find a significant negative relationship between leaf size and wood density.

Spatial trends in leaf size of Amazonian rainforest trees

NASA Astrophysics Data System (ADS)

Malhado, A. C. M.; Malhi, Y.; Whittaker, R. J.; Ladle, R. J.; Ter Steege, H.; Phillips, O. L.; Butt, N.; Aragão, L. E. O. C.; Quesada, C. A.; Araujo-Murakami, A.; Arroyo, L.; Peacock, J.; Lopez-Gonzalez, G.; Baker, T. R.; Anderson, L. O.; Almeida, S.; Higuchi, N.; Killeen, T. J.; Monteagudo, A.; Neill, D.; Pitman, N.; Prieto, A.; Salomão, R. P.; Vásquez-Martínez, R.; Laurance, W. F.

2009-08-01

Leaf size influences many aspects of tree function such as rates of transpiration and photosynthesis and, consequently, often varies in a predictable way in response to environmental gradients. The recent development of pan-Amazonian databases based on permanent botanical plots has now made it possible to assess trends in leaf size across environmental gradients in Amazonia. Previous plot-based studies have shown that the community structure of Amazonian trees breaks down into at least two major ecological gradients corresponding with variations in soil fertility (decreasing from southwest to northeast) and length of the dry season (increasing from northwest to south and east). Here we describe the geographic distribution of leaf size categories based on 121 plots distributed across eight South American countries. We find that the Amazon forest is predominantly populated by tree species and individuals in the mesophyll size class (20.25-182.25 cm2). The geographic distribution of species and individuals with large leaves (>20.25 cm2) is complex but is generally characterized by a higher proportion of such trees in the northwest of the region. Spatially corrected regressions reveal weak correlations between the proportion of large-leaved species and metrics of water availability. We also find a significant negative relationship between leaf size and wood density.

Contemporary pollen and seed dispersal in natural populations of Bertholletia excelsa (Bonpl.).

PubMed

Baldoni, A B; Wadt, L H O; Campos, T; Silva, V S; Azevedo, V C R; Mata, L R; Botin, A A; Mendes, N O; Tardin, F D; Tonini, H; Hoogerheide, E S S; Sebbenn, A M

2017-09-21

Due to the nutritional content and commercial value of its seeds, Bertholletia excelsa is one of the most important species exploited in the Amazon region. The species is hermaphroditic, insect pollinated, and its seeds are dispersed by barochory and animals. Because the fruit set is dependent on natural pollinator activity, gene flow plays a key role in fruit production. However, to date, there have been no studies on pollen and seed flow in natural populations of B. excelsa. Herein, we used microsatellite loci and parentage analysis to investigate the spatial genetic structure (SGS), realized pollen and seed dispersal, and effective pollen dispersal for two B. excelsa populations in the Brazilian Amazon forest. Two plots were established in natural forests from which adults, juveniles, and seeds were sampled. Realized and effective pollen flow was greater than realized seed flow. The distance of realized pollen dispersal ranged from 36 to 2060 m, and the distance of realized seed dispersal ranged from 30 to 1742 m. Both pollen and seeds showed a dispersal pattern of isolation by distance, indicating a high frequency of mating among near-neighbor trees and seed dispersal near to mother trees. Both populations present SGS up to 175 m, which can be explained by isolation by distance pollen and seed dispersal patterns. Our results suggested that fragmentation of these forest populations may result in a significant decrease in gene flow, due to the isolation by distance pollen and seed dispersal patterns.

Ancient human disturbances may be skewing our understanding of Amazonian forests

PubMed Central

McMichael, Crystal N. H.; Matthews-Bird, Frazer; Farfan-Rios, William; Feeley, Kenneth J.

2017-01-01

Although the Amazon rainforest houses much of Earth’s biodiversity and plays a major role in the global carbon budget, estimates of tree biodiversity originate from fewer than 1,000 forest inventory plots, and estimates of carbon dynamics are derived from fewer than 200 recensus plots. It is well documented that the pre-European inhabitants of Amazonia actively transformed and modified the forest in many regions before their population collapse around 1491 AD; however, the impacts of these ancient disturbances remain entirely unaccounted for in the many highly influential studies using Amazonian forest plots. Here we examine whether Amazonian forest inventory plot locations are spatially biased toward areas with high probability of ancient human impacts. Our analyses reveal that forest inventory plots, and especially forest recensus plots, in all regions of Amazonia are located disproportionately near archaeological evidence and in areas likely to have ancient human impacts. Furthermore, regions of the Amazon that are relatively oversampled with inventory plots also contain the highest values of predicted ancient human impacts. Given the long lifespan of Amazonian trees, many forest inventory and recensus sites may still be recovering from past disturbances, potentially skewing our interpretations of forest dynamics and our understanding of how these forests are responding to global change. Empirical data on the human history of forest inventory sites are crucial for determining how past disturbances affect modern patterns of forest composition and carbon flux in Amazonian forests. PMID:28049821

Biotransformation of 2-Benzoxazolinone and 2-Hydroxy-1,4-Benzoxazin-3-one by Endophytic Fungi Isolated from Aphelandra tetragona

PubMed Central

Zikmundová, M.; Drandarov, K.; Bigler, L.; Hesse, M.; Werner, C.

2002-01-01

The biotransformation of the phytoanticipins 2-benzoxazolinone (BOA) and 2-hydroxy-1,4-benzoxazin-3-one (HBOA) by four endophytic fungi isolated from Aphelandra tetragona was studied. Using high-performance liquid chromatography-mass spectrometry, several new products of acylation, oxidation, reduction, hydrolysis, and nitration were identified. Fusarium sambucinum detoxified BOA and HBOA to N-(2-hydroxyphenyl)malonamic acid. Plectosporium tabacinum, Gliocladium cibotii, and Chaetosphaeria sp. transformed HBOA to 2-hydroxy-N-(2-hydroxyphenyl)acetamide, N-(2-hydroxyphenyl)acetamide, N-(2-hydroxy-5-nitrophenyl)acetamide, N-(2-hydroxy-3-nitrophenyl)acetamide, 2-amino-3H-phenoxazin-3-one, 2-acetylamino-3H-phenoxazin-3-one, and 2-(N-hydroxy)acetylamino-3H-phenoxazin-3-one. BOA was not degraded by these three fungal isolates. Using 2-hydroxy-N-(2-hydroxyphenyl)[13C2]acetamide, it was shown that the metabolic pathway for HBOA and BOA degradation leads to o-aminophenol as a key intermediate. PMID:12324332

Does really Born Oppenheimer approximation break down in charge transfer processes? An exactly solvable model

NASA Astrophysics Data System (ADS)

Kuznetsov, Alexander M.; Medvedev, Igor G.

2006-05-01

Effects of deviation from the Born-Oppenheimer approximation (BOA) on the non-adiabatic transition probability for the transfer of a quantum particle in condensed media are studied within an exactly solvable model. The particle and the medium are modeled by a set of harmonic oscillators. The dynamic interaction of the particle with a single local mode is treated explicitly without the use of BOA. Two particular situations (symmetric and non-symmetric systems) are considered. It is shown that the difference between the exact solution and the true BOA is negligibly small at realistic parameters of the model. However, the exact results differ considerably from those of the crude Condon approximation (CCA) which is usually considered in the literature as a reference point for BOA (Marcus-Hush-Dogonadze formula). It is shown that the exact rate constant can be smaller (symmetric system) or larger (non-symmetric one) than that obtained in CCA. The non-Condon effects are also studied.

Did egg-laying boas break Dollo's law? Phylogenetic evidence for reversal to oviparity in sand boas (Eryx: Boidae).

PubMed

Lynch, Vincent J; Wagner, Günter P

2010-01-01

Re-evolution of lost complex morphological characters has been proposed for several characters, including insect wings, limbs, eyes in snakes, and digits in lizards, among others. There has also been much interest in whether the transition from oviparity to viviparity is reversible, particularly in squamate reptiles where the transition to viviparity has occurred more times than in any other lineage. Here, we present a phylogenetic analysis of boid snakes based on a concatenated multigene study of all genera of erycines, New and Old World boines, plus other groups thought to be closely related with boines such as monotypic species Calabaria and Casarea. We reconstruct ancestral parity mode on this phylogeny and present statistical evidence that oviparity reevolved in a species of Old World sand boa in the genus Eryx nearly 60 million years after the initial boid transition to viviparity. Remarkably, like other viviparous boas hatchlings of oviparous Eryx lack an egg-tooth providing independent evidence that oviparity is a derived state in these species.

Parallel selective pressures drive convergent diversification of phenotypes in pythons and boas.

PubMed

Esquerré, Damien; Scott Keogh, J

2016-07-01

Pythons and boas are globally distributed and distantly related radiations with remarkable phenotypic and ecological diversity. We tested whether pythons, boas and their relatives have evolved convergent phenotypes when they display similar ecology. We collected geometric morphometric data on head shape for 1073 specimens representing over 80% of species. We show that these two groups display strong and widespread convergence when they occupy equivalent ecological niches and that the history of phenotypic evolution strongly matches the history of ecological diversification, suggesting that both processes are strongly coupled. These results are consistent with replicated adaptive radiation in both groups. We argue that strong selective pressures related to habitat-use have driven this convergence. Pythons and boas provide a new model system for the study of macro-evolutionary patterns of morphological and ecological evolution and they do so at a deeper level of divergence and global scale than any well-established adaptive radiation model systems. © 2016 John Wiley & Sons Ltd/CNRS.

Predicting the response of the Amazon rainforest to persistent drought conditions under current and future climates: a major challenge for global land surface models

NASA Astrophysics Data System (ADS)

Joetzjer, E.; Delire, C.; Douville, H.; Ciais, P.; Decharme, B.; Fisher, R.; Christoffersen, B.; Calvet, J. C.; da Costa, A. C. L.; Ferreira, L. V.; Meir, P.

2014-12-01

While a majority of global climate models project drier and longer dry seasons over the Amazon under higher CO2 levels, large uncertainties surround the response of vegetation to persistent droughts in both present-day and future climates. We propose a detailed evaluation of the ability of the ISBACC (Interaction Soil-Biosphere-Atmosphere Carbon Cycle) land surface model to capture drought effects on both water and carbon budgets, comparing fluxes and stocks at two recent throughfall exclusion (TFE) experiments performed in the Amazon. We also explore the model sensitivity to different water stress functions (WSFs) and to an idealized increase in CO2 concentration and/or temperature. In spite of a reasonable soil moisture simulation, ISBACC struggles to correctly simulate the vegetation response to TFE whose amplitude and timing is highly sensitive to the WSF. Under higher CO2 concentrations, the increased water-use efficiency (WUE) mitigates the sensitivity of ISBACC to drought. While one of the proposed WSF formulations improves the response of most ISBACC fluxes, except respiration, a parameterization of drought-induced tree mortality is missing for an accurate estimate of the vegetation response. Also, a better mechanistic understanding of the forest responses to drought under a warmer climate and higher CO2 concentration is clearly needed.

Patents on periphery of the Amazon rainforest.

PubMed

de Moura, Emanoel G; Araújo, José R G; Monroe, Paulo H M; de O Nascimento, Ivaneide; Aguiar, Alana C F

2009-06-01

In the humid tropics, on the edges of the Amazon forest, the technological challenges to establishing and maintaining productive and sustainable agricultural systems have yet to be overcome. The groups involved in agriculture in the north of Brazil still engage in the practice of slash and burn in order to prepare and fertilize the soil. This produces negative effects for the local and global environment, without the counter-effect of providing social benefits to rural communities. Whether this process continues is of fundamental importance to many countries because it means that slash and burn agriculture is advancing on the Amazon rainforest, with a negative effect on every dimension of national policy. Beyond social political problems the biggest challenge for researchers in the field of tropical agriculture is to offer technological alternatives that can sustain agriculture in soils derived from sedimentary rocks that have been subjected to a high degree of weathering. In this article patented information is also discussed. Experiments undertaken in this region recommend taking advantage of the rapid growth of plants in the tropics. We aimed at proposing a suitable alternative system for a sustainable soil management in the particular conditions of humid tropics, named as "no-till in alley cropping using tree leguminous mulch." This system offers the advantages of: bringing together, in the same space and at the same time, the processes of cultivation and the regeneration of soil fertility.

Diphtheroid colitis in a Boa constrictor infected with amphibian Entamoeba sp.

PubMed

Richter, Barbara; Kübber-Heiss, Anna; Weissenböck, Herbert

2008-05-06

A female boa (Boa constrictor) from a zoological collection was submitted for necropsy after sudden death. Prominent pathological findings included a diphtheroid colitis, endoparasitism, focal pneumonia and inclusion bodies typical for inclusion body disease (IBD). In the colon entamoebae were identified, which differed in size and distribution from Entamoeba invadens. Gene sequence analysis of the 18S ribosomal RNA revealed 100% similarity with an Entamoeba species from the African bullfrog (Pyxicephalus adspersus), probably Entamoeba ranarum. The snake was possibly immunosuppressed, and the source of infection remains unclear. This is the first report of an infection with an amphibian Entamoeba species associated with colitis in a snake.

Biosynthesis of 8-O-methylated benzoxazinoid defense compounds in maize

USDA-ARS?s Scientific Manuscript database

Benzoxazinoids are important defense compounds in grasses. Here, we investigated the biosynthesis and biological roles of the 8-O-methylated benzoxazinoids, DIM2BOA-Glc and HDM2BOA-Glc. Using quantitative trait locus mapping and heterologous expression, we identified a 2-oxoglutarate-dependent dioxy...

Influence of amino acids on the phytotoxicity of 2-benzoxazolinone on Lemna paucicostata

USDA-ARS?s Scientific Manuscript database

2-Benzoxazolinone (BOA) is a phytotoxic compound that induces strong effects on plant metabolism. BOA effects include increased membrane permeability, degradation of proteins and pigments, increased lipid peroxidation, oxidative stress and senescence induction. In this work, the effects of amino aci...

Two Horizontally Transferred Xenobiotic Resistance Gene Clusters Associated with Detoxification of Benzoxazolinones by Fusarium Species

PubMed Central

Glenn, Anthony E.; Davis, C. Britton; Gao, Minglu; Gold, Scott E.; Mitchell, Trevor R.; Proctor, Robert H.; Stewart, Jane E.; Snook, Maurice E.

2016-01-01

Microbes encounter a broad spectrum of antimicrobial compounds in their environments and often possess metabolic strategies to detoxify such xenobiotics. We have previously shown that Fusarium verticillioides, a fungal pathogen of maize known for its production of fumonisin mycotoxins, possesses two unlinked loci, FDB1 and FDB2, necessary for detoxification of antimicrobial compounds produced by maize, including the γ-lactam 2-benzoxazolinone (BOA). In support of these earlier studies, microarray analysis of F. verticillioides exposed to BOA identified the induction of multiple genes at FDB1 and FDB2, indicating the loci consist of gene clusters. One of the FDB1 cluster genes encoded a protein having domain homology to the metallo-β-lactamase (MBL) superfamily. Deletion of this gene (MBL1) rendered F. verticillioides incapable of metabolizing BOA and thus unable to grow on BOA-amended media. Deletion of other FDB1 cluster genes, in particular AMD1 and DLH1, did not affect BOA degradation. Phylogenetic analyses and topology testing of the FDB1 and FDB2 cluster genes suggested two horizontal transfer events among fungi, one being transfer of FDB1 from Fusarium to Colletotrichum, and the second being transfer of the FDB2 cluster from Fusarium to Aspergillus. Together, the results suggest that plant-derived xenobiotics have exerted evolutionary pressure on these fungi, leading to horizontal transfer of genes that enhance fitness or virulence. PMID:26808652

Why arboreal snakes should not be cylindrical: body shape, incline and surface roughness have interactive effects on locomotion.

PubMed

Jayne, Bruce C; Newman, Steven J; Zentkovich, Michele M; Berns, H Matthew

2015-12-01

Depending on animal size, shape, body plan and behaviour, variation in surface structure can affect the speed and ease of locomotion. The slope of branches and the roughness of bark both vary considerably, but their combined effects on the locomotion of arboreal animals are poorly understood. We used artificial branches with five inclines and five peg heights (≤40 mm) to test for interactive effects on the locomotion of three snake species with different body shapes. Unlike boa constrictors (Boa constrictor), corn snakes (Pantherophis guttatus) and brown tree snakes (Boiga irregularis) can both form ventrolateral keels, which are most pronounced in B. irregularis. Increasing peg height up to 10 mm elicited more of the lateral undulatory behaviour (sliding contact without gripping) rather than the concertina behaviour (periodic static gripping) and increased the speed of lateral undulation. Increased incline: (1) elicited more concertina locomotion, (2) decreased speed and (3) increased the threshold peg height that elicited lateral undulation. Boiga irregularis was the fastest species, and it used lateral undulation on the most surfaces, including a vertical cylinder with pegs only 1 mm high. Overall, B. constrictor was the slowest and used the most concertina locomotion, but this species climbed steep, smooth surfaces faster than P. guttatus. Our results illustrate how morphology and two different aspects of habitat structure can have interactive effects on organismal performance and behaviour. Notably, a sharper keel facilitated exploiting shorter protrusions to prevent slipping and provide propulsion, which became increasingly important as surface steepness increased. © 2015. Published by The Company of Biologists Ltd.

Tree growth rates in an Amazonian evergreen forest: seasonal patterns and correlations with leaf phenology

NASA Astrophysics Data System (ADS)

Wu, J.; Silva Campos, K.; Prohaska, N.; Ferreira, M. L.; Nelson, B. W.; Saleska, S. R.; da Silva, R.

2014-12-01

Metabolism and phenology of tropical forests significantly influence global dynamics of climate, carbon and water. However, there is still lack of mechanistic understanding of the controls on tropical forest metabolism, particularly at individual tree level. In this study, we are interested in investigating (1) what is the seasonal pattern of woody growth for tropical trees and (2) what is the mechanistic controls onwoody growth at individual level?To explore the above questions,we use two data sources from an evergreen tropical forest KM67 site (near Santarem, Brazil). They are: (1) image time series from a tower mounted RGB imaging system, with images recordedin10 minutes interval since October 2013.Images near local noon homogeneous diffuse lighting were selectedfor leaf phenologymonitoring; (2) ground based bi-weekly biometry survey (via dendrometry band technique) for 25 trees from random sampling since September 2013. 12 among 25 trees are within the tower mounted camera image view. Our preliminary resultsdemonstrate that 20 trees among 25 trees surveyed significantly increase woody growth (or "green up") in dry season. Our results also find thatamong those 20 trees, 12 trees reaches the maximum woody increment rate in late dry season with a mean DBH (Diameter at Breast Height) around 30 cm,while 8 trees reaching the maximum in the middle of wet season, with a mean DBH around 90 cm. This study,though limited in the sample size, mightprovide another line of evidence that Amazon rainforests "green up" in dry season. As for mechanistic controls on tropical tree woody control, we hypothesize both climate and leaf phenology control individual woody growth. We would like to link both camera based leaf phenology and climate data in the next to explorethe reason as to the pattern found in this study that bigger trees might have different seasonal growth pattern as smaller trees.

Isolation and structure of palstatin from the Amazon tree Hymeneae palustris(1).

PubMed

Pettit, George R; Meng, Yanhui; Stevenson, Clare A; Doubek, Dennis L; Knight, John C; Cichacz, Zbigniew; Pettit, Robin K; Chapuis, Jean-Charles; Schmidt, Jean M

2003-02-01

Bioassay (P388 lymphocytic leukemia cell line and human cancer cell lines) guided separation of an extract prepared from the leaves of Hymenaea palustris Ducké led to the isolation of six cancer cell growth inhibitory flavonoids (1-6). The structures were elucidated by HRMS and 1D and 2D NMR spectral analysis. The new flavonolignan 1 designated palstatin proved to be a methoxy structural modification of 5'-methoxyhydnocarpin-D (2). Flavones 1-4 inhibited growth of the pathogenic bacteria Enterococcus faecalis and/or Neisseria gonorrhoeae.

Revisiting mechanisms underlying tree mortality induced by drought in the Amazon: from observation to modeling

NASA Astrophysics Data System (ADS)

Joetzjer, E.; Poulter, B.; Ciais, P.; Sala, A.; Sack, L.; Bartlett, M.

2015-12-01

In the past decade, two extreme droughts experienced by the Amazon rainforest led to a perturbation of carbon cycle dynamics and forest structure, partly through an increase in tree mortality. While there is a relatively strong consensus in CMIP5 projections for an increase in both frequency and intensity of droughts across the Amazon, the potential for forest die-off constitutes a large uncertainty in projections of climate impacts on terrestrial ecosystems and carbon cycle feedbacks. Two long-term through fall exclusion experiments (TFE) provided novel observations of Amazonian ecosystem responses under drought. These experiments also provided a great opportunity to evaluate and improve models' behavior under drought by comparing simulations and observations. While current DGVM use a wide array of algorithms to represent mortality, most are associated with large uncertainty for representing drought-induced mortality, and require updating to include current information of physiological processes. During very strong droughts, the leaves desiccate and stems may undergo catastrophic embolism. However, even before that point, stomata close, to minimize excessive water loss and risk of hydraulic failure, which reduces carbon assimilation. To maintain respiration and other functions, plants may eventually deplete stored non-structural carbon compounds (NSC), which may have negative impacts on plant and eventually increase the probability of mortality.Here, we describe a new parameterization of the mortality process induced by drought using the ORCHIDEE-CAN dynamic vegetation model and test it using the two TFE results. We first updated and evaluated both the representation of hydraulic architecture and the NSC pool dynamics using in situ data. We implemented a direct climate effect on mortality through catastrophic stem embolism, based on hydraulic vulnerability curves. In addition, we explored the role of NSC on hydraulic failure and mortality by coupling in the model NSC content and vulnerability curves, following the idea that stored NSC serves a critical osmotic function. Our results suggest that models have the capacity to represent individual mortality from a mechanistic perspective, providing a framework for informing future experiments and data collection for model development.

New estimates of temperature response of leaf photosynthesis in Amazon forest trees, its acclimation to mean temperature change and consequences for modelling climate response to rain forests.

NASA Astrophysics Data System (ADS)

Kruijt, B.; Jans, W.; Vasconcelos, S.; Tribuzy, E. S.; Felsemburgh, C.; Eliane, M.; Rowland, L.; da Costa, A. C. L.; Meir, P.

2014-12-01

In many dynamic vegetation models, degradation of the tropical forests is induced because they assume that productivity falls rapidly when temperatures rise in the region of 30-40°C. Apart plant respiration, this is due to the assumptions on the temperature optima of photosynthetic capacity, which are low and can differ widely between models, where in fact hardly any empirical information is available for tropical forests. Even less is known about the possibility that photosynthesis will acclimate to changing temperatures. The objective of this study to is to provide better estimates for optima, as well as to determine whether any acclimation to temperature change is to be expected. We present both new and hitherto unpublished data on the temperature response of photosynthesis of Amazon rainforest trees, encompassing three sites, several species and five field campaigns. Leaf photosynthesis and its parameters were determined at a range of temperatures. To study the long-term (seasonal) acclimation of this response, this was combined with an artificial, in situ, multi-season leaf heating experiment. The data show that, on average for all non-heated cases, the photosynthetic parameter Vcmax weakly peaks between 35 and 40 ˚C, while heating does not have a clearly significant effect. Results for Jmax are slightly different, with sharper peaks. Scatter was relatively high, which could indicate weak overall temperature dependence. The combined results were used to fit new parameters to the various temperature response curve functions in a range of DGVMs. The figure shows a typical example: while the default Jules model assumes a temperature optimum for Vcmax at around 33 ˚C, the data suggest that Vcmax keeps rising up to at least 40 ˚C. Of course, calculated photosynthesis, obtained by applying this Vcmax in the Farquhar model, peaks at lower temperature. Finally, the implication of these new model parameters for modelled climate change impact on modelled Amazon forests will be assessed, where it is expected that predicted die-back will be less.

Basin-wide variations in Amazon forest structure and function are mediated by both soils and climate

NASA Astrophysics Data System (ADS)

Quesada, C. A.; Phillips, O. L.; Schwarz, M.; Czimczik, C. I.; Baker, T. R.; Patiño, S.; Fyllas, N. M.; Hodnett, M. G.; Herrera, R.; Almeida, S.; Alvarez Dávila, E.; Arneth, A.; Arroyo, L.; Chao, K. J.; Dezzeo, N.; Erwin, T.; di Fiore, A.; Higuchi, N.; Honorio Coronado, E.; Jimenez, E. M.; Killeen, T.; Lezama, A. T.; Lloyd, G.; López-González, G.; Luizão, F. J.; Malhi, Y.; Monteagudo, A.; Neill, D. A.; Núñez Vargas, P.; Paiva, R.; Peacock, J.; Peñuela, M. C.; Peña Cruz, A.; Pitman, N.; Priante Filho, N.; Prieto, A.; Ramírez, H.; Rudas, A.; Salomão, R.; Santos, A. J. B.; Schmerler, J.; Silva, N.; Silveira, M.; Vásquez, R.; Vieira, I.; Terborgh, J.; Lloyd, J.

2012-06-01

Forest structure and dynamics vary across the Amazon Basin in an east-west gradient coincident with variations in soil fertility and geology. This has resulted in the hypothesis that soil fertility may play an important role in explaining Basin-wide variations in forest biomass, growth and stem turnover rates. Soil samples were collected in a total of 59 different forest plots across the Amazon Basin and analysed for exchangeable cations, carbon, nitrogen and pH, with several phosphorus fractions of likely different plant availability also quantified. Physical properties were additionally examined and an index of soil physical quality developed. Bivariate relationships of soil and climatic properties with above-ground wood productivity, stand-level tree turnover rates, above-ground wood biomass and wood density were first examined with multivariate regression models then applied. Both forms of analysis were undertaken with and without considerations regarding the underlying spatial structure of the dataset. Despite the presence of autocorrelated spatial structures complicating many analyses, forest structure and dynamics were found to be strongly and quantitatively related to edaphic as well as climatic conditions. Basin-wide differences in stand-level turnover rates are mostly influenced by soil physical properties with variations in rates of coarse wood production mostly related to soil phosphorus status. Total soil P was a better predictor of wood production rates than any of the fractionated organic- or inorganic-P pools. This suggests that it is not only the immediately available P forms, but probably the entire soil phosphorus pool that is interacting with forest growth on longer timescales. A role for soil potassium in modulating Amazon forest dynamics through its effects on stand-level wood density was also detected. Taking this into account, otherwise enigmatic variations in stand-level biomass across the Basin were then accounted for through the interacting effects of soil physical and chemical properties with climate. A hypothesis of self-maintaining forest dynamic feedback mechanisms initiated by edaphic conditions is proposed. It is further suggested that this is a major factor determining endogenous disturbance levels, species composition, and forest productivity across the Amazon Basin.

"Roda Boa", "Roda Boa": Legitimate Peripheral Participation in Diasporic "Capoeira"

ERIC Educational Resources Information Center

Stephens, Neil; Delamont, Sara

2010-01-01

"Capoeira", the Brazilian dance and martial art, is taught across the world. Learners acquire vital knowledge and are socialised as "capoeiristas" through legitimate peripheral participation, in particular when watching games in the "roda". The "roda", the circle within which the "capoeira" game is played, is a classic place for learning by…

The Importance of Tree Size and Fecundity for Wind Dispersal of Big-Leaf Mahogany

PubMed Central

Norghauer, Julian M.; Nock, Charles A.; Grogan, James

2011-01-01

Seed dispersal by wind is a critical yet poorly understood process in tropical forest trees. How tree size and fecundity affect this process at the population level remains largely unknown because of insufficient replication across adults. We measured seed dispersal by the endangered neotropical timber species big-leaf mahogany (Swietenia macrophylla King, Meliaceae) in the Brazilian Amazon at 25 relatively isolated trees using multiple 1-m wide belt transects extended 100 m downwind. Tree diameter and fecundity correlated positively with increased seed shadow extent; but in combination large, high fecundity trees contributed disproportionately to longer-distance dispersal events (>60 m). Among three empirical models fitted to seed density vs. distance in one dimension, the Student-t (2Dt) generally fit best (compared to the negative exponential and inverse power). When seedfall downwind was modelled in two dimensions using a normalised sample, it peaked furthest downwind (c. 25 m) for large, high-fecundity trees; with the inverse Gaussian and Weibull functions providing comparable fits that were slightly better than the lognormal. Although most seeds fell within 30 m of parent trees, relatively few juveniles were found within this distance, resulting in juvenile-to-seed ratios peaking at c. 35–45 m. Using the 2Dt model fits to predict seed densities downwind, coupled with known fecundity data for 2000–2009, we evaluated potential Swietenia regeneration near adults (≤30 m dispersal) and beyond 30 m. Mean seed arrival into canopy gaps >30 m downwind was more than 3× greater for large, high fecundity trees than small, high-fecundity trees. Tree seed production did not necessarily scale up proportionately with diameter, and was not consistent across years, and this resulting intraspecific variation can have important consequences for local patterns of dispersal in forests. Our results have important implications for management and conservation of big-leaf mahogany populations, and may apply to other threatened wind-dispersed Meliaceae trees. PMID:21408184

Informed consent and the readability of the written consent form.

PubMed

Sivanadarajah, N; El-Daly, I; Mamarelis, G; Sohail, M Z; Bates, P

2017-11-01

Introduction The aim of this study was to objectively ascertain the level of readability of standardised consent forms for orthopaedic procedures. Methods Standardised consent forms (both in summary and detailed formats) endorsed by the British Orthopaedic Association (BOA) were retrieved from orthoconsent.com and assessed for readability. This involved using an online tool to calculate the validated Flesch reading ease score (FRES). This was compared with the FRES for the National Health Service (NHS) Consent Form 1. Data were analysed and interpreted according to the FRES grading table. Results The FRES for Consent Form 1 was 55.6, relating to the literacy expected of an A level student. The mean FRES for the BOA summary consent forms (n=27) was 63.6 (95% confidence interval [CI]: 61.2-66.0) while for the detailed consent forms (n=32), it was 68.9 (95% CI: 67.7-70.0). All BOA detailed forms scored >60, correlating to the literacy expected of a 13-15-year-old. The detailed forms had a higher FRES than the summary forms (p<0.001). Conclusions This study demonstrates that the BOA endorsed standardised consent forms are much easier to read and understand than the NHS Consent Form 1, with the detailed BOA forms being the easiest to read. Despite this, owing to varying literacy levels, a significant proportion of patients may struggle to give informed consent based on the written information provided to them.

Isolation and identification of bacterial populations of zoonotic importance from captive non-venomous snakes in Malaysia.

PubMed

Abba, Yusuf; Ilyasu, Yusuf Maina; Noordin, Mustapha Mohamed

2017-07-01

Captivity of non-venomous snakes such as python and boa are common in zoos, aquariums and as pets in households. Poor captivity conditions expose these reptiles to numerous pathogens which may result in disease conditions. The purpose of this study was to investigate the common bacteria isolated from necropsied captive snakes in Malaysia over a five year period. A total of 27 snake carcasses presented for necropsy at the Universiti Putra Malaysia (UPM) were used in this survey. Samples were aseptically obtained at necropsy from different organs/tissues (lung, liver, heart, kindey, oesophagus, lymph node, stomach, spinal cord, spleen, intestine) and cultured onto 5% blood and McConkey agar, respectively. Gram staining, morphological evaluation and biochemical test such as oxidase, catalase and coagulase were used to tentatively identify the presumptive bacterial isolates. Pythons had the highest number of cases (81.3%) followed by anaconda (14.8%) and boa (3.7%). Mixed infection accounted for 81.5% in all snakes and was highest in pythons (63%). However, single infection was only observed in pythons (18.5%). A total of 82.7%, 95.4% and 100% of the bacterial isolates from python, anaconda and boa, respectively were gram negative. Aeromonas spp was the most frequently isolated bacteria in pythons and anaconda with incidences of 25 (18%) and 8 (36.6%) with no difference (p > 0.05) in incidence, respectively, while Salmonella spp was the most frequently isolated in boa and significantly higher (p < 0.05) than in python and anaconda. Bacteria species were most frequently isolated from the kidney of pythons 35 (25.2%), intestines of anacondas 11 (50%) and stomach of boa 3 (30%). This study showed that captive pythons harbored more bacterial species than anaconda or boa. Most of the bacterial species isolated from these snakes have public health importance and have been incriminated in human infections worldwide. Copyright © 2017 Elsevier Ltd. All rights reserved.

Identification, characterization, and in vitro culture of highly divergent arenaviruses from boa constrictors and annulated tree boas: candidate etiological agents for snake inclusion body disease.

PubMed

Stenglein, Mark D; Sanders, Chris; Kistler, Amy L; Ruby, J Graham; Franco, Jessica Y; Reavill, Drury R; Dunker, Freeland; Derisi, Joseph L

2012-01-01

Inclusion body disease (IBD) is an infectious fatal disease of snakes typified by behavioral abnormalities, wasting, and secondary infections. At a histopathological level, the disease is identified by the presence of large eosinophilic cytoplasmic inclusions in multiple tissues. To date, no virus or other pathogen has been definitively characterized or associated with the disease. Using a metagenomic approach to search for candidate etiologic agents in snakes with confirmed IBD, we identified and de novo assembled the complete genomic sequences of two viruses related to arenaviruses, and a third arenavirus-like sequence was discovered by screening an additional set of samples. A continuous boa constrictor cell line was established and used to propagate and isolate one of the viruses in culture. Viral nucleoprotein was localized and concentrated within large cytoplasmic inclusions in infected cells in culture and tissues from diseased snakes. In total, viral RNA was detected in 6/8 confirmed IBD cases and 0/18 controls. These viruses have a typical arenavirus genome organization but are highly divergent, belonging to a lineage separate from that of the Old and New World arenaviruses. Furthermore, these viruses encode envelope glycoproteins that are more similar to those of filoviruses than to those of other arenaviruses. These findings implicate these viruses as candidate etiologic agents of IBD. The presence of arenaviruses outside mammals reveals that these viruses infect an unexpectedly broad range of species and represent a new reservoir of potential human pathogens. Inclusion body disease (IBD) is a common infectious disease of captive snakes. IBD is fatal and can cause the loss of entire animal collections. The cause of the disease has remained elusive, and no treatment exists. In addition to being important to pet owners, veterinarians, breeders, zoological parks, and aquariums, the study of animal disease is significant since animals are the source of virtually every emerging infectious human disease. We searched for candidate causative agents in snakes diagnosed with IBD and found a group of novel viruses distantly related mainly to arenaviruses but also to filoviruses, both of which can cause fatal hemorrhagic fevers when transmitted from animals to humans. In addition to providing evidence that strongly suggests that these viruses cause snake IBD, this discovery reveals a new and unanticipated domain of virus biology and evolution.

Geographical Variation in Community Divergence: Insights from Tropical Forest Monodominance by Ectomycorrhizal Trees.

PubMed

Fukami, Tadashi; Nakajima, Mifuyu; Fortunel, Claire; Fine, Paul V A; Baraloto, Christopher; Russo, Sabrina E; Peay, Kabir G

2017-08-01

Convergence occurs in both species traits and community structure, but how convergence at the two scales influences each other remains unclear. To address this question, we focus on tropical forest monodominance, in which a single, often ectomycorrhizal (EM) tree species occasionally dominates forest stands within a landscape otherwise characterized by diverse communities of arbuscular mycorrhizal (AM) trees. Such monodominance is a striking potential example of community divergence resulting in alternative stable states. However, it is observed only in some tropical regions. A diverse suite of AM and EM trees locally codominate forest stands elsewhere. We develop a hypothesis to explain this geographical difference using a simulation model of plant community assembly. Simulation results suggest that in a region with a few EM species (e.g., South America), EM trees experience strong selection for convergent traits that match the abiotic conditions of the environment. Consequently, EM species successfully compete against other species to form monodominant stands via positive plant-soil feedbacks. By contrast, in a region with many EM species (e.g., Southeast Asia), species maintain divergent traits because of complex plant-soil feedbacks, with no species having traits that enable monodominance. An analysis of plant trait data from Borneo and Peruvian Amazon was inconclusive. Overall, this work highlights the utility of geographical comparison in understanding the relationship between trait convergence and community convergence.

The Impacts of Climate-Induced Drought on Biogeochemical Cycles

NASA Astrophysics Data System (ADS)

Peng, C.

2014-12-01

Terrestrial ecosystems and, in particular, forests exert strong controls on the global biogeochemical cycles and influence regional hydrology and climatology directly through water and surface energy budgets. Recent studies indicated that forest mortality caused by rising temperature and drought from around the world have unexpectedly increased in the past decade and they collectively illustrate the vulnerability of many forested ecosystems to rapid increases in tree mortality due to warmer temperatures and more severe drought. Persistent changes in tree mortality rates can alter forest structure, composition, and ecosystem services (such as albedo and carbon sequestration). Quantifying potential impacts of tree mortality on ecosystem processes requires research into mortality effects on carbon, energy, and water budgets at both site and regional levels. Despite recent progress, the uncertainty around mortality responses still limits our ability to predict the likelihood and anticipate the impacts of tree die-off. Studies are needed that explore tree death physiology for a wide variety of functional types, connect patterns of mortality with climate events, and quantify the impacts on carbon, energy, and water flux. In this presentation, I will highlight recent research progress, and identify key research needs and future challenges to predict the consequence and impacts of drought-induced large-scale forest mortality on biogeochemical cycles. I will focus on three main forest ecosystems (tropic rainforest in Amazon, temperate forest in Western USA, and boreal forest in Canada) as detailed case studies.

Leaf temperature and stomatal influences on sap velocity diurnal hysteresis in the Amazon rainforest

NASA Astrophysics Data System (ADS)

Jardine, K.; Gimenez, B.; Negron Juarez, R. I.; Koven, C.; Powell, T.; Higuchi, N.; Chambers, J.; Varadharajan, C.

2016-12-01

In order to improve our ability to predict terrestrial evapotranspiration fluxes, an understanding of the interactions between plant physiology and environmental conditions is necessary, but remains poorly characterized, especially in tropical ecosystems. In this study we show a tight positive correlation between sap velocity (at 1 m of height) and leaf surface temperature (LST, 20-30 m of height) in canopy dominant trees in two primary rainforest sites in the Amazon basin (Santarém and Manaus, Brazil). As leaf temperatures varied throughout the day, sap velocity responded with little delay (<15 min). Positive sap velocity was often observed at night, but also closely followed night time LSTs. When plotted versus LST, sap velocity showed an exponential increase before reaching a reflection point and a plateau and is characterized as a sigmoidal curve, in all observed trees. Moreover, a clear diurnal hysteresis in sap velocity was evident with morning periods showing higher temperature sensitivities than afternoon and night periods. Diurnal leaf observations showed a morning peak in stomatal conductance ( 10:00-10:30), but a mid-day to afternoon peak in transpiration and leaf temperature (12:00-14:00). Our observations suggest the sap velocity-LST hysteresis pattern arises due to the temporal offset between stomatal conductance and vapor pressure deficits (VPD) and demonstrates the dominating effect of VPD over stomatal conductance in maintaining high transpiration/sap flow rates under elevated temperatures. Our results have important implications for modeling tropical forest transpiration and suggests the possibility of predicting evapotranspiration fluxes at the ecosystem to regional scales based on remote sensed vegetation temperature.

"Different by Degree": Ella Cara Deloria, Zora Neale Hurston, and Franz Boas Contend with Race and Ethnicity.

ERIC Educational Resources Information Center

Hoefel, Roseanne

2001-01-01

American Indian ethnographer and linguist Ella Cara Deloria and African American folklorist and writer Zora Neale Hurston did fieldwork for Franz Boas, the father of modern anthropology. Both were shocked by how American racism empowered white people's historical actions. By correcting stereotypes through their work, they reasserted the role of…

COS FUV BOA performance at LP4

NASA Astrophysics Data System (ADS)

White, James

2016-10-01

This is a program to observe the photometric standard star G191-B2B with the bright object aperture (BOA) for one external orbit. Spectra will be obtained in the G130M, G160M, and G140L gratings at one cenwave each to 1) roughly measure the spectral resolution and 2) obtain the cross-dispersion profiles

Habitat association, size, stomach contents, and reproductive condition of Puerto Rican boas (Epicrates inornatus)

USGS Publications Warehouse

Wiley, J.W.

2003-01-01

The Puerto Rican boa occurs in a variety of habitats, including wet montane forest, lowland wet forest, mangrove forest, wet limestone karst, and offshore cays, and from sea level to 480 m. Mean SVL of 49 encountered boas (live and road-killed) was 136.9 ?? 35.1 (range = 38.8-205 cm), with a mean mass of 952.1 ?? 349.0 g (n = 47; range = 140-1662 g). Prey in digestive tracts (n = 29) included remains of black rats, house mice, three species of anoles, bats, common ground-doves, domestic fowl chicks, and invertebrates. Females were in reproductive condition in late April through mid-August and had an average brood size of 21.8 ?? 6.0 (n = 9, range = 13-30 ).

Parthenogenesis in a Brazilian rainbow boa (Epicrates cenchria cenchria).

PubMed

Kinney, Matthew E; Wack, Raymund F; Grahn, Robert A; Lyons, Leslie

2013-03-01

A 22-year-old captive Brazilian rainbow boa (Epicrates cenchria cenchria) gave birth to four offspring after being housed with a vasectomized male. Sexual reproduction as a result of failed prior vasectomy, recanalization of the vas deferens, or prolonged sperm storage was ruled out using the clinical history, histopathology, and gross necropsy. Short tandem repeat (STR) DNA markers were genotyped in the male, female, and four offspring. None of the offspring possessed a diagnostic STR allele present in the potential sire. In addition, all offspring were homozygous at each STR locus evaluated, supporting parthenogenetic reproduction. This is the first report of parthenogenesis in a Brazilian rainbow boa and has implications for the conservation of reptiles maintained in captive breeding programs. © 2012 Wiley Periodicals, Inc.

Seasonal and interannual variability of climate and vegetation indices across the Amazon.

PubMed

Brando, Paulo M; Goetz, Scott J; Baccini, Alessandro; Nepstad, Daniel C; Beck, Pieter S A; Christman, Mary C

2010-08-17

Drought exerts a strong influence on tropical forest metabolism, carbon stocks, and ultimately the flux of carbon to the atmosphere. Satellite-based studies have suggested that Amazon forests green up during droughts because of increased sunlight, whereas field studies have reported increased tree mortality during severe droughts. In an effort to reconcile these apparently conflicting findings, we conducted an analysis of climate data, field measurements, and improved satellite-based measures of forest photosynthetic activity. Wet-season precipitation and plant-available water (PAW) decreased over the Amazon Basin from 1996-2005, and photosynthetically active radiation (PAR) and air dryness (expressed as vapor pressure deficit, VPD) increased from 2002-2005. Using improved enhanced vegetation index (EVI) measurements (2000-2008), we show that gross primary productivity (expressed as EVI) declined with VPD and PAW in regions of sparse canopy cover across a wide range of environments for each year of the study. In densely forested areas, no climatic variable adequately explained the Basin-wide interannual variability of EVI. Based on a site-specific study, we show that monthly EVI was relatively insensitive to leaf area index (LAI) but correlated positively with leaf flushing and PAR measured in the field. These findings suggest that production of new leaves, even when unaccompanied by associated changes in LAI, could play an important role in Basin-wide interannual EVI variability. Because EVI variability was greatest in regions of lower PAW, we hypothesize that drought could increase EVI by synchronizing leaf flushing via its effects on leaf bud development.

Litter mercury deposition in the Amazonian rainforest.

PubMed

Fostier, Anne Hélène; Melendez-Perez, José Javier; Richter, Larissa

2015-11-01

The objective of this work was to assess the flux of atmospheric mercury transferred to the soil of the Amazonian rainforest by litterfall. Calculations were based on a large survey of published and unpublished data on litterfall and Hg concentrations in litterfall samples from the Amazonian region. Litterfall based on 65 sites located in the Amazon rainforest averaged 8.15 ± 2.25 Mg ha(-1) y(-1). Average Hg concentrations were calculated from nine datasets for fresh tree leaves and ten datasets for litter, and a median concentration of 60.5 ng Hg g(-1) was considered for Hg deposition in litterfall, which averaged 49 ± 14 μg m(-2) yr(-1). This value was used to estimate that in the Amazonian rainforest, litterfall would be responsible for the annual removing of 268 ± 77 Mg of Hg, approximately 8% of the total atmospheric Hg deposition to land. The impact of the Amazon deforestation on the Hg biogeochemical cycle is also discussed. Copyright © 2015 Elsevier Ltd. All rights reserved.

Population structure of an endemic vulnerable species, the Jamaican boa (Epicrates subflavus).

PubMed

Tzika, Athanasia C; Koenig, Susan; Miller, Ricardo; Garcia, Gerardo; Remy, Christophe; Milinkovitch, Michel C

2008-01-01

The Jamaican boa (Epicrates subflavus; also called Yellow boa) is an endemic species whose natural populations greatly and constantly declined since the late 19th century, mainly because of predation by introduced species, human persecution, and habitat destruction. In-situ conservation of the Jamaican boa is seriously hindered by the lack of information on demographic and ecological parameters as well as by a poor understanding of the population structure and species distribution in the wild. Here, using nine nuclear microsatellite loci and a fragment of the mitochondrial cytochrome b gene from 87 wild-born individuals, we present the first molecular genetic analyses focusing on the diversity and structure of the natural populations of the Jamaican boa. A model-based clustering analysis of multilocus microsatellite genotypes identifies three groups that are also significantly differentiated on the basis of F-statistics. Similarly, haplotypic network reconstruction methods applied on the cytochrome b haplotypes isolated here identify two well-differentiated haplogroups separated by four to six fixed mutations. Bayesian and metaGA analyses of the mitochondrial data set combined with sequences from other Boidae species indicate that rooting of the haplotypic network occurs most likely between the two defined haplogroups. Both analyses (based on nuclear and mitochondrial markers) underline an Eastern vs. (Western + Central) pattern of differentiation in agreement with geological data and patterns of differentiation uncovered in other vertebrate and invertebrate Jamaican species. Our results provide important insights for improving management of ex-situ captive populations and for guiding the development of proper in-situ species survival and habitat management plans for this spectacular, yet poorly known and vulnerable, snake.

Detoxification of Benzoxazolinone Allelochemicals from Wheat by Gaeumannomyces graminis var. tritici, G. graminis var. graminis, G. graminis var. avenae, and Fusarium culmorum

PubMed Central

Friebe, A.; Vilich, V.; Hennig, L.; Kluge, M.; Sicker, D.

1998-01-01

The ability of phytopathogenic fungi to overcome the chemical defense barriers of their host plants is of great importance for fungal pathogenicity. We studied the role of cyclic hydroxamic acids and their related benzoxazolinones in plant interactions with pathogenic fungi. We identified species-dependent differences in the abilities of Gaeumannomyces graminis var. tritici, Gaeumannomyces graminis var. graminis, Gaeumannomyces graminis var. avenae, and Fusarium culmorum to detoxify these allelochemicals of gramineous plants. The G. graminis var. graminis isolate degraded benzoxazolin-2(3H)-one (BOA) and 6-methoxy-benzoxazolin-2(3H)-one (MBOA) more efficiently than did G. graminis var. tritici and G. graminis var. avenae. F. culmorum degraded BOA but not MBOA. N-(2-Hydroxyphenyl)-malonamic acid and N-(2-hydroxy-4-methoxyphenyl)-malonamic acid were the primary G. graminis var. graminis and G. graminis var. tritici metabolites of BOA and MBOA, respectively, as well as of the related cyclic hydroxamic acids. 2-Amino-3H-phenoxazin-3-one was identified as an additional G. graminis var. tritici metabolite of BOA. No metabolite accumulation was detected for G. graminis var. avenae and F. culmorum by high-pressure liquid chromatography. The mycelial growth of the pathogenic fungi was inhibited more by BOA and MBOA than by their related fungal metabolites. The tolerance of Gaeumannomyces spp. for benzoxazolinone compounds is correlated with their detoxification ability. The ability of Gaeumannomyces isolates to cause root rot symptoms in wheat (cultivars Rektor and Astron) parallels their potential to degrade wheat allelochemicals to nontoxic compounds. PMID:9647804

Cutaneous and Subcutaneous Soft Tissue Tumours in Snakes: A Retrospective Study of 33 Cases.

PubMed

Dietz, J; Heckers, K O; Aupperle, H; Pees, M

2016-07-01

Cutaneous and subcutaneous soft tissue tumours have been rarely described in detail in snakes. Several malignant entities show strikingly similar histological patterns and therefore the term soft tissue sarcoma (STS) has become a standard histopathological diagnosis. The present study characterizes soft tissue tumours in 33 snakes. Samples included 29 surgically excised masses and four carcasses. Additionally, six animals were humanely destroyed and submitted for necropsy examination following tumour recurrence. Benign neoplasms (n = 8) were described as lipomas of varying differentiation. Recurrence was observed in two of five snakes in which the clinical course was recorded. Malignant neoplasms (n = 25) were diagnosed as STS and graded according to a three-point system previously applied to canine STS. Five (20%) of the primary tumours were classified as grade 1, eleven (44%) as grade 2 and nine (36%) as grade 3 sarcomas. Clinically, recurrence of STS was observed in 11 of 17 cases with available follow-up information. Pathologically, multiple cutaneous metastases were found in one grass snake (Natrix natrix), while visceral metastases were observed in one carpet python (Morelia spilota) and two corn snakes (Pantherophis guttatus). Metastatic risk appears to increase with histological grade. Surgical excision generally represents the current therapy of choice for STS. This study includes the first reports of conventional lipomas in a ribbon snake (Thamnophis radix), angiolipomas in a black-headed python (Aspidites melanocephalus) and a corn snake as well as of STS in a Jamaican boa (Epicrates subflavus), emerald tree boa (Corallus caninus), grass snake (N. natrix), African house snake (Lamprophis fuliginosus), California kingsnake (Lampropeltis getula californiae) and common garter snake (Thamnophis sirtalis). Copyright © 2016 Elsevier Ltd. All rights reserved.

The Value of Competitive Contracting

DTIC Science & Technology

2014-09-01

Research & Engineering) BBP Better Buying Power BOA basic ordering agreement BPA basic purchase agreement CAE Component Acquisition Executive CDSA...competitive procedures for the following contract actions:” a. Contract and purchase orders b. Orders and calls under part 13 Basic Purchase Agreement ( BPA ...Basic Ordering Agreement (BOA) c. Government wide acquisition contracts and IDIQ contracts d. BPAs and BPA calls under Federal Supply Schedules

Present spatial diversity patterns of Theobroma cacao L. in the neotropics reflect genetic differentiation in pleistocene refugia followed by human-influenced dispersal.

PubMed

Thomas, Evert; van Zonneveld, Maarten; Loo, Judy; Hodgkin, Toby; Galluzzi, Gea; van Etten, Jacob

2012-01-01

Cacao (Theobroma cacao L.) is indigenous to the Amazon basin, but is generally believed to have been domesticated in Mesoamerica for the production of chocolate beverage. However, cacao's distribution of genetic diversity in South America is also likely to reflect pre-Columbian human influences that were superimposed on natural processes of genetic differentiation. Here we present the results of a spatial analysis of the intra-specific diversity of cacao in Latin America, drawing on a dataset of 939 cacao trees genotypically characterized by means of 96 SSR markers. To assess continental diversity patterns we performed grid-based calculations of allelic richness, Shannon diversity and Nei gene diversity, and distinguished different spatially coherent genetic groups by means of cluster analysis. The highest levels of genetic diversity were observed in the Upper Amazon areas from southern Peru to the Ecuadorian Amazon and the border areas between Colombia, Peru and Brazil. On the assumption that the last glaciation (22,000-13,000 BP) had the greatest pre-human impact on the current distribution and diversity of cacao, we modeled the species' Pleistocene niche suitability and overlaid this with present-day diversity maps. The results suggest that cacao was already widely distributed in the Western Amazon before the onset of glaciation. During glaciations, cacao populations were likely to have been restricted to several refugia where they probably underwent genetic differentiation, resulting in a number of genetic clusters which are representative for, or closest related to, the original wild cacao populations. The analyses also suggested that genetic differentiation and geographical distribution of a number of other clusters seem to have been significantly affected by processes of human management and accompanying genetic bottlenecks. We discuss the implications of these results for future germplasm collection and in situ, on farm and ex situ conservation of cacao.

Present Spatial Diversity Patterns of Theobroma cacao L. in the Neotropics Reflect Genetic Differentiation in Pleistocene Refugia Followed by Human-Influenced Dispersal

PubMed Central

Thomas, Evert; van Zonneveld, Maarten; Loo, Judy; Hodgkin, Toby; Galluzzi, Gea; van Etten, Jacob

2012-01-01

Cacao (Theobroma cacao L.) is indigenous to the Amazon basin, but is generally believed to have been domesticated in Mesoamerica for the production of chocolate beverage. However, cacao’s distribution of genetic diversity in South America is also likely to reflect pre-Columbian human influences that were superimposed on natural processes of genetic differentiation. Here we present the results of a spatial analysis of the intra-specific diversity of cacao in Latin America, drawing on a dataset of 939 cacao trees genotypically characterized by means of 96 SSR markers. To assess continental diversity patterns we performed grid-based calculations of allelic richness, Shannon diversity and Nei gene diversity, and distinguished different spatially coherent genetic groups by means of cluster analysis. The highest levels of genetic diversity were observed in the Upper Amazon areas from southern Peru to the Ecuadorian Amazon and the border areas between Colombia, Peru and Brazil. On the assumption that the last glaciation (22,000–13,000 BP) had the greatest pre-human impact on the current distribution and diversity of cacao, we modeled the species’ Pleistocene niche suitability and overlaid this with present-day diversity maps. The results suggest that cacao was already widely distributed in the Western Amazon before the onset of glaciation. During glaciations, cacao populations were likely to have been restricted to several refugia where they probably underwent genetic differentiation, resulting in a number of genetic clusters which are representative for, or closest related to, the original wild cacao populations. The analyses also suggested that genetic differentiation and geographical distribution of a number of other clusters seem to have been significantly affected by processes of human management and accompanying genetic bottlenecks. We discuss the implications of these results for future germplasm collection and in situ, on farm and ex situ conservation of cacao. PMID:23112832

Central Brazil

NASA Technical Reports Server (NTRS)

2002-01-01

This Moderate resolution Imaging Spectroradiometer (MODIS) true-color image was acquired on October 19, 2000, over a region in Brazil large enough to show much of the country's diverse landscape. Spanning some 8.5 million square kilometers (3.2 million square miles), Brazil is by far the largest South American nation--both in terms of land and population. The region known as the Amazon Basin lies to the northwest (upper left) and extends well beyond the northern and western edges of this scene. Typically, from this perspective Amazonia appears as a lush, dark green carpet due to the thick canopy of vegetation growing there. Some of the Amazon Basin is visible in this image, but much is obscured by clouds (bright white pixels), as is the Amazon River. This region is home to countless plant and animal species and some 150,000 native South Americans. The clusters of square and rectangular patterns toward the center of the image (light green or reddish-brown pixels) are where people have cleared away trees and vegetation to make room for development and agriculture. Toward the western side of the scene there is considerable haze and smoke from widespread biomass burning in parts of Brazil and Bolivia, which shares its eastern border with Brazil. Toward the east in this image is the highland, or 'cerrado,' region, which is more sparsely vegetated and has a somewhat drier climate than the Amazon Basin. The capital city, Brasilia, lies within this region just southwest of the Geral de Goias Mountains (orangish pixels running north-south). There are two large water reservoirs visible in this scene--the Sobradinho Reservoir about 800 km (500 miles) northeast of Brasilia, and the Paranaiba about 500 km (300 miles) southwest of Brasilia. MODIS flies aboard NASA's Terra spacecraft. Image courtesy Brian Montgomery, Reto Stockli, and Robert Simmon, based on data from the MODIS Science Team.

Effects of some benzoxazinoids on in vitro growth of Cephalosporium gramineum and other fungi pathogenic to cereals and on Cephalosporium stripe of winter wheat.

PubMed

Martyniuk, Stefan; Stochmal, Anna; Macías, Francisco A; Marín, David; Oleszek, Wieslaw

2006-02-22

The benzoxazolinones benzoxazolin-2(3H)-one (BOA) and 6-methoxybenzoxazolin-2(3H)-one (MBOA) and selected degradation products of these compounds were examined for their in vitro antifungal activity against Cephalosporium gramineum, Gaeumannomyces graminis var. graminis, and Fusarium culmorum. BOA was also applied to the soil-incorporated inoculum of C. gramineum to test its capability of reducing Cephalosporium stripe disease in winter wheat. MBOA reduced the mycelial growth of G. graminis var. tritici, C. gramineum, and F. culmorum by 50% (EC50) at the concentrations of 77, 134, and 271 microg/mL of corn meal agar, respectively, and the corresponding BOA EC50 values for the fungi were 11, 189, and 456 microg/mL. BOA degradation products 2-amino-3H-phenoxazin-3-one (APO), 2-acetylamino-3H-phenoxazin-3-one (AAPO), and o-aminophenol (o-AP) were much more inhibitory to the growth of C. gramineum and G. graminis var. tritici than the parent compounds. APO, AAPO, and o-AP EC50 values were found to be as low as 0.58, 4.57, and 1.4 microg/mL, respectively, for C. gramineum and 0.78, 2.18, and 0.80 microg/mL for G. graminis var. tritici. These compounds applied at the corresponding concentrations did not significantly affect the mycelial growth of F. culmorum. The treatment of C. gramineum inoculum with a 1% water solution of BOA resulted in a significant reduction infection of winter wheat with C. gramineum as compared to the control with the untreated inoculum,but this treatment was not as effective as the application of a commercial fungicide.

Downstream impacts of a Central Amazonian hydroelectric dam on tree growth and mortality in floodplain forests

NASA Astrophysics Data System (ADS)

Resende, A. F. D.; Silva, T. S. F.; Silva, J. D. S.; Piedade, M. T. F.; Streher, A. S.; Ferreira-Ferreira, J.; Schongart, J.

2017-12-01

The flood pulse of large Amazonian Rivers is characterized by predictable high- and low-water periods during the annual cycle, and is the main driving force in the floodplains regulating decomposition, nutrient cycles, productivity, life cycles and growth rhythms of floodplains' biota. Over at least 20 millions of years, tree species in these ecosystems developed complex adaptative mechanisms to tolerate flooding, such as the tree species Macrolobium acaciifolium (Fabaceae) and Eschweilera tenuifolia (Lecythidaceae) occupying the lower topographic positions in the floodplain forests along the oligothrophic black-water rivers. Tree growth occurs mainly during terrestrial phase, while during the aquatic phase the anoxic conditions result into a cambial dormancy and formation of annual tree rings. The hydroelectric dam Balbina which was installed in the Uatumã River (central Amazonia) during the 1980s altered significantly the flood pulse regime resulting into higher minimum and lower maximum annual water levels. The suppression of the terrestrial phase caused large-scale mortality of flood-adapted trees growing on the lower topographic positions, as evidenced by radiocarbon dating and cross-dating techniques (dendrochronology). In this study we estimated the extension of dead forests using high resolution ALOS/PALSAR radar images, for their detection along a fluvial distance of more than 280 km downstream of the power plant. Further we analyzed tree growth of 60 living individuals of E. tenuifolia by tree-ring analyses comparing the post- and pre-dam periods. We evaluated the impacts of the altered hydrological regime on tree growth considering ontogenetic effects and the fluvial distance of the trees to the dam. Since the Balbina power plant started operating the associated igapó forests lost about 11% of its cover. We found a significant reduction of tree growth of E. tenuifolia during the post-dam period as a consequence of the increasing aquatic phase duration. This impact was stronger for younger trees (<200 yr) and for those growing closer to the hydroelectric dam (<100 km distance). Considering the planning of construction of several dozen dams in the Amazon there is an urgent need to consider these downstream impacts in all discussions of hydroelectric power plants implementation and operation.

Modeling Diurnal and Seasonal 3D Light Profiles in Amazon Forests

NASA Astrophysics Data System (ADS)

Morton, D. C.; Rubio, J.; Gastellu-Etchegorry, J.; Cook, B. D.; Hunter, M. O.; Yin, T.; Nagol, J. R.; Keller, M. M.

2013-12-01

The complex horizontal and vertical structure in tropical forests generates a diversity of light environments for canopy and understory trees. These 3D light profiles are dynamic on diurnal and seasonal time scales based on changes in solar illumination and the fraction of diffuse light. Understanding this variability is critical for improving ecosystem models and interpreting optical and LiDAR remote sensing data from tropical forests. Here, we initialized the Discrete Anisotropic Radiative Transfer (DART) model using dense airborne LiDAR data (>20 returns m2) from three forest sites in the central and eastern Amazon. Forest scenes derived from airborne LiDAR data were tested using modeled and observed large-footprint LiDAR data from the ICESat-GLAS sensor. Next, diurnal and seasonal profiles of photosynthetically active radiation (PAR) for each forest site were simulated under clear sky and cloudy conditions using DART. Incident PAR was summarized for canopy, understory, and ground levels. Our study illustrates the importance of realistic canopy models for accurate representation of LiDAR and optical radiative transfer. In particular, canopy rugosity and ground topography information from airborne LiDAR data provided critical 3D information that cannot be recreated using stem maps and allometric relationships for crown dimensions. The spatial arrangement of canopy trees altered PAR availability, even for dominant individuals, compared to downwelling measurements from nearby eddy flux towers. Pseudo-realistic branch and leaf architecture was also essential for recreating multiple scattering within canopies at near-infrared wavelengths commonly used for LiDAR remote sensing and quantifying PAR attenuation from shading within and between canopies. These findings point to the need for more spatial information on forest structure to improve the representation of light availability in models of tropical forest productivity.

Mapping and spatiotemporal characterization of degraded forests in the Brazilian Amazon through remote sensing

NASA Astrophysics Data System (ADS)

de Souza, Carlos Moreira, Jr.

Large forested areas have recently been impoverished by degradation caused by selective logging, forest fires and fragmentation in the Amazon region, causing partial change of the original forest structure and composition. As opposed to deforestation that has been monitored with Landsat images since the late 70's, degraded forests have not been monitored in the Amazon region. In this dissertation, remote sensing techniques for identifying and mapping unambiguously degraded forests with Landsat images are proposed. The test area was the region of Sinop, located in the state of Mato Grosso, Brazil. This region was selected because a gradient of degraded forest environments exist and a robust time-series of Landsat images and forest transect data were available. First, statistical analyses were applied to identify the best set of spectral information extracted from Landsat images to detect several types of degraded forest environments. Fraction images derived from Spectral Mixture Analysis (SMA) were the best type of information for that purpose. A new spectral index based on fraction images---Normalized Difference Fraction Index (NDFI)---was proposed to enhance the detection of canopy damaged areas in degraded forests. Second, a contextual classification algorithm was implemented to separate unambiguously forest degradation caused by anthropogenic activities from natural forest disturbances. These techniques were validated using forest transects and high resolution aerial videography images and proved to be highly accurate. Next, these techniques were applied to a time-series data set of Landsat images, encompassing 20 years, to evaluate the relationship between forest degradation and deforestation. The most important finding of the forest change detection analysis was that forest degradation and deforestation are independent events in the study area, making worse the current forest impacts in the Amazon region. Finally, the techniques developed and tested in the Sinop region were successfully applied to forty Landsat images covering other regions of the Brazilian Amazon. Standard fractions and NDFI images were computed for these other regions and both physically and spatially consistent results were obtained. An automated decision tree classification using genetic algorithm was implemented successfully to classify land cover types and sub-classes of degraded forests. The remote sensing techniques proposed in this dissertation are fully automated and have the potential to be used in tropical forest monitoring programs.

Foraging Behavior, Home Range, Movements and Activity Patterns of Epicrates inornatus (Boidae) at Mata de Plátano Reserve in Arecibo, Puerto Rico

Treesearch

Alberto R. Puente-Rolón; Fernando J. Bird-Picó

2004-01-01

Observations of foraging behavior of the Puerto Rican boa (Epicrates inornatus) were performed at a cave entrance beginning one hour before sunset until one hour after sunrise. Boas captured bats from 1745 h to 0600 h, but most captures were between 1900 and 2400 h. The most common preyed bats were Erophylla sezekorni,

Seasonal and interannual variability of climate and vegetation indices across the Amazon

PubMed Central

Brando, Paulo M.; Goetz, Scott J.; Baccini, Alessandro; Nepstad, Daniel C.; Beck, Pieter S. A.; Christman, Mary C.

2010-01-01

Drought exerts a strong influence on tropical forest metabolism, carbon stocks, and ultimately the flux of carbon to the atmosphere. Satellite-based studies have suggested that Amazon forests green up during droughts because of increased sunlight, whereas field studies have reported increased tree mortality during severe droughts. In an effort to reconcile these apparently conflicting findings, we conducted an analysis of climate data, field measurements, and improved satellite-based measures of forest photosynthetic activity. Wet-season precipitation and plant-available water (PAW) decreased over the Amazon Basin from 1996−2005, and photosynthetically active radiation (PAR) and air dryness (expressed as vapor pressure deficit, VPD) increased from 2002–2005. Using improved enhanced vegetation index (EVI) measurements (2000–2008), we show that gross primary productivity (expressed as EVI) declined with VPD and PAW in regions of sparse canopy cover across a wide range of environments for each year of the study. In densely forested areas, no climatic variable adequately explained the Basin-wide interannual variability of EVI. Based on a site-specific study, we show that monthly EVI was relatively insensitive to leaf area index (LAI) but correlated positively with leaf flushing and PAR measured in the field. These findings suggest that production of new leaves, even when unaccompanied by associated changes in LAI, could play an important role in Basin-wide interannual EVI variability. Because EVI variability was greatest in regions of lower PAW, we hypothesize that drought could increase EVI by synchronizing leaf flushing via its effects on leaf bud development. PMID:20679201

Ancestry informative markers in Amerindians from Brazilian Amazon.

PubMed

Luizon, Marcelo Rizzatti; Mendes-Junior, Celso Teixeira; De Oliveira, Silviene Fabiana; Simões, Aguinaldo Luiz

2008-01-01

Ancestry informative markers (AIMs) are genetic loci with large frequency differences between the major ethnic groups and are very useful in admixture estimation. However, their frequencies are poorly known within South American indigenous populations, making it difficult to use them in admixture studies with Latin American populations, such as the trihybrid Brazilian population. To minimize this problem, the frequencies of the AIMs FY-null, RB2300, LPL, AT3-I/D, Sb19.3, APO, and PV92 were determined via PCR and PCR-RFLP in four tribes from Brazilian Amazon (Tikúna, Kashinawa, Baníwa, and Kanamarí), to evaluate their potential for discriminating indigenous populations from Europeans and Africans, as well as discriminating each tribe from the others. Although capable of differentiating tribes, as evidenced by the exact test of population differentiation, a neighbor-joining tree suggests that the AIMs are useless in obtaining reliable reconstructions of the biological relationships and evolutionary history that characterize the villages and tribes studied. The mean allele frequencies from these AIMs were very similar to those observed for North American natives. They discriminated Amerindians from Africans, but not from Europeans. On the other hand, the neighbor-joining dendrogram separated Africans and Europeans from Amerindians with a high statistical support (bootstrap = 0.989). The relatively low diversity (G(ST) = 0.042) among North American natives and Amerindians from Brazilian Amazon agrees with the lack of intra-ethnic variation previously reported for these markers. Despite genetic drift effects, the mean allelic frequencies herein presented could be used as Amerindian parental frequencies in admixture estimates in urban Brazilian populations. (c) 2007 Wiley-Liss, Inc.

Dimethyl sulfide in the Amazon rain forest

NASA Astrophysics Data System (ADS)

Jardine, K.; Yañez-Serrano, A. M.; Williams, J.; Kunert, N.; Jardine, A.; Taylor, T.; Abrell, L.; Artaxo, P.; Guenther, A.; Hewitt, C. N.; House, E.; Florentino, A. P.; Manzi, A.; Higuchi, N.; Kesselmeier, J.; Behrendt, T.; Veres, P. R.; Derstroff, B.; Fuentes, J. D.; Martin, S. T.; Andreae, M. O.

2015-01-01

Surface-to-atmosphere emissions of dimethyl sulfide (DMS) may impact global climate through the formation of gaseous sulfuric acid, which can yield secondary sulfate aerosols and contribute to new particle formation. While oceans are generally considered the dominant sources of DMS, a shortage of ecosystem observations prevents an accurate analysis of terrestrial DMS sources. Using mass spectrometry, we quantified ambient DMS mixing ratios within and above a primary rainforest ecosystem in the central Amazon Basin in real-time (2010-2011) and at high vertical resolution (2013-2014). Elevated but highly variable DMS mixing ratios were observed within the canopy, showing clear evidence of a net ecosystem source to the atmosphere during both day and night in both the dry and wet seasons. Periods of high DMS mixing ratios lasting up to 8 h (up to 160 parts per trillion (ppt)) often occurred within the canopy and near the surface during many evenings and nights. Daytime gradients showed mixing ratios (up to 80 ppt) peaking near the top of the canopy as well as near the ground following a rain event. The spatial and temporal distribution of DMS suggests that ambient levels and their potential climatic impacts are dominated by local soil and plant emissions. A soil source was confirmed by measurements of DMS emission fluxes from Amazon soils as a function of temperature and soil moisture. Furthermore, light- and temperature-dependent DMS emissions were measured from seven tropical tree species. Our study has important implications for understanding terrestrial DMS sources and their role in coupled land-atmosphere climate feedbacks.

Phylogeny and diversity of neotropical monkey lizards (Iguanidae: Polychrus Cuvier, 1817).

PubMed

Torres-Carvajal, Omar; Koch, Claudia; Venegas, Pablo J; Poe, Steve

2017-01-01

Neotropical monkey lizards (Polychrus) are arboreal lizards with compressed bodies, partially fused eyelids and strikingly long, whip-like tails. The eight currently recognized species occur in the lowlands of South and Central America. Based on the largest taxon and character sampling to date, we analyze three mitochondrial and one nuclear gene using Bayesian methods to (1) infer the phylogeny of Polychrus under both concatenated-tree and species-tree methods; (2) identify lineages that could represent putative undescribed species; and (3) estimate divergence times. Our species tree places P. acutirostris as the sister taxon to all other species of Polychrus. While the phylogenetic position of P. gutturosus and P. peruvianus is poorly resolved, P. marmoratus and P. femoralis are strongly supported as sister to P. liogaster and P. jacquelinae, respectively. Recognition of P. auduboni and P. marmoratus sensu stricto as distinct species indicates that the populations of "P. marmoratus" from the Amazon and the Atlantic coast in Brazil represent separate species. Similarly, populations of P. femoralis from the Tumbes region might belong to a cryptic undescribed species. Relative divergence times and published age estimates suggest that the orogeny of the Andes did not play a significant role in the early evolution of Polychrus.

Phylogeny and diversity of neotropical monkey lizards (Iguanidae: Polychrus Cuvier, 1817)

PubMed Central

Venegas, Pablo J.; Poe, Steve

2017-01-01

Neotropical monkey lizards (Polychrus) are arboreal lizards with compressed bodies, partially fused eyelids and strikingly long, whip-like tails. The eight currently recognized species occur in the lowlands of South and Central America. Based on the largest taxon and character sampling to date, we analyze three mitochondrial and one nuclear gene using Bayesian methods to (1) infer the phylogeny of Polychrus under both concatenated-tree and species-tree methods; (2) identify lineages that could represent putative undescribed species; and (3) estimate divergence times. Our species tree places P. acutirostris as the sister taxon to all other species of Polychrus. While the phylogenetic position of P. gutturosus and P. peruvianus is poorly resolved, P. marmoratus and P. femoralis are strongly supported as sister to P. liogaster and P. jacquelinae, respectively. Recognition of P. auduboni and P. marmoratus sensu stricto as distinct species indicates that the populations of "P. marmoratus" from the Amazon and the Atlantic coast in Brazil represent separate species. Similarly, populations of P. femoralis from the Tumbes region might belong to a cryptic undescribed species. Relative divergence times and published age estimates suggest that the orogeny of the Andes did not play a significant role in the early evolution of Polychrus. PMID:28570575

Evolutionary heritage influences Amazon tree ecology.

PubMed

Coelho de Souza, Fernanda; Dexter, Kyle G; Phillips, Oliver L; Brienen, Roel J W; Chave, Jerome; Galbraith, David R; Lopez Gonzalez, Gabriela; Monteagudo Mendoza, Abel; Pennington, R Toby; Poorter, Lourens; Alexiades, Miguel; Álvarez-Dávila, Esteban; Andrade, Ana; Aragão, Luis E O C; Araujo-Murakami, Alejandro; Arets, Eric J M M; Aymard C, Gerardo A; Baraloto, Christopher; Barroso, Jorcely G; Bonal, Damien; Boot, Rene G A; Camargo, José L C; Comiskey, James A; Valverde, Fernando Cornejo; de Camargo, Plínio B; Di Fiore, Anthony; Elias, Fernando; Erwin, Terry L; Feldpausch, Ted R; Ferreira, Leandro; Fyllas, Nikolaos M; Gloor, Emanuel; Herault, Bruno; Herrera, Rafael; Higuchi, Niro; Honorio Coronado, Eurídice N; Killeen, Timothy J; Laurance, William F; Laurance, Susan; Lloyd, Jon; Lovejoy, Thomas E; Malhi, Yadvinder; Maracahipes, Leandro; Marimon, Beatriz S; Marimon-Junior, Ben H; Mendoza, Casimiro; Morandi, Paulo; Neill, David A; Vargas, Percy Núñez; Oliveira, Edmar A; Lenza, Eddie; Palacios, Walter A; Peñuela-Mora, Maria C; Pipoly, John J; Pitman, Nigel C A; Prieto, Adriana; Quesada, Carlos A; Ramirez-Angulo, Hirma; Rudas, Agustin; Ruokolainen, Kalle; Salomão, Rafael P; Silveira, Marcos; Stropp, Juliana; Ter Steege, Hans; Thomas-Caesar, Raquel; van der Hout, Peter; van der Heijden, Geertje M F; van der Meer, Peter J; Vasquez, Rodolfo V; Vieira, Simone A; Vilanova, Emilio; Vos, Vincent A; Wang, Ophelia; Young, Kenneth R; Zagt, Roderick J; Baker, Timothy R

2016-12-14

Lineages tend to retain ecological characteristics of their ancestors through time. However, for some traits, selection during evolutionary history may have also played a role in determining trait values. To address the relative importance of these processes requires large-scale quantification of traits and evolutionary relationships among species. The Amazonian tree flora comprises a high diversity of angiosperm lineages and species with widely differing life-history characteristics, providing an excellent system to investigate the combined influences of evolutionary heritage and selection in determining trait variation. We used trait data related to the major axes of life-history variation among tropical trees (e.g. growth and mortality rates) from 577 inventory plots in closed-canopy forest, mapped onto a phylogenetic hypothesis spanning more than 300 genera including all major angiosperm clades to test for evolutionary constraints on traits. We found significant phylogenetic signal (PS) for all traits, consistent with evolutionarily related genera having more similar characteristics than expected by chance. Although there is also evidence for repeated evolution of pioneer and shade tolerant life-history strategies within independent lineages, the existence of significant PS allows clearer predictions of the links between evolutionary diversity, ecosystem function and the response of tropical forests to global change. © 2016 The Authors.

Evolutionary heritage influences Amazon tree ecology

PubMed Central

Coelho de Souza, Fernanda; Dexter, Kyle G.; Phillips, Oliver L.; Brienen, Roel J. W.; Chave, Jerome; Galbraith, David R.; Lopez Gonzalez, Gabriela; Monteagudo Mendoza, Abel; Pennington, R. Toby; Poorter, Lourens; Alexiades, Miguel; Álvarez-Dávila, Esteban; Andrade, Ana; Aragão, Luis E. O. C.; Araujo-Murakami, Alejandro; Arets, Eric J. M. M.; Aymard C, Gerardo A.; Baraloto, Christopher; Barroso, Jorcely G.; Bonal, Damien; Boot, Rene G. A.; Camargo, José L. C.; Comiskey, James A.; Valverde, Fernando Cornejo; de Camargo, Plínio B.; Di Fiore, Anthony; Erwin, Terry L.; Feldpausch, Ted R.; Ferreira, Leandro; Fyllas, Nikolaos M.; Gloor, Emanuel; Herault, Bruno; Herrera, Rafael; Higuchi, Niro; Honorio Coronado, Eurídice N.; Killeen, Timothy J.; Laurance, William F.; Laurance, Susan; Lloyd, Jon; Lovejoy, Thomas E.; Malhi, Yadvinder; Maracahipes, Leandro; Marimon, Beatriz S.; Marimon-Junior, Ben H.; Mendoza, Casimiro; Morandi, Paulo; Neill, David A.; Vargas, Percy Núñez; Oliveira, Edmar A.; Lenza, Eddie; Palacios, Walter A.; Peñuela-Mora, Maria C.; Pipoly, John J.; Pitman, Nigel C. A.; Prieto, Adriana; Quesada, Carlos A.; Ramirez-Angulo, Hirma; Rudas, Agustin; Ruokolainen, Kalle; Salomão, Rafael P.; Silveira, Marcos; ter Steege, Hans; Thomas-Caesar, Raquel; van der Hout, Peter; van der Heijden, Geertje M. F.; van der Meer, Peter J.; Vasquez, Rodolfo V.; Vieira, Simone A.; Vilanova, Emilio; Vos, Vincent A.; Wang, Ophelia; Young, Kenneth R.; Zagt, Roderick J.; Baker, Timothy R.

2016-01-01

Lineages tend to retain ecological characteristics of their ancestors through time. However, for some traits, selection during evolutionary history may have also played a role in determining trait values. To address the relative importance of these processes requires large-scale quantification of traits and evolutionary relationships among species. The Amazonian tree flora comprises a high diversity of angiosperm lineages and species with widely differing life-history characteristics, providing an excellent system to investigate the combined influences of evolutionary heritage and selection in determining trait variation. We used trait data related to the major axes of life-history variation among tropical trees (e.g. growth and mortality rates) from 577 inventory plots in closed-canopy forest, mapped onto a phylogenetic hypothesis spanning more than 300 genera including all major angiosperm clades to test for evolutionary constraints on traits. We found significant phylogenetic signal (PS) for all traits, consistent with evolutionarily related genera having more similar characteristics than expected by chance. Although there is also evidence for repeated evolution of pioneer and shade tolerant life-history strategies within independent lineages, the existence of significant PS allows clearer predictions of the links between evolutionary diversity, ecosystem function and the response of tropical forests to global change. PMID:27974517

Revisiting drought impact on tree mortality and carbon fluxes in ORCHIDEE-CAN DGVM

NASA Astrophysics Data System (ADS)

Joetzjer, E.; Bartlett, M. K.; Sack, L.; Poulter, B.; Ciais, P.

2016-12-01

In the past decade, two extreme droughts in the Amazon rainforest led to a perturbation of carbon cycle dynamics and forest structure, partly through an increase in tree mortality. While there is a relatively strong consensus in CMIP5 projections for an increase in both frequency and intensity of droughts across the Amazon, the potential for forest die-off constitutes a large uncertainty in projections of climate impacts on terrestrial ecosystems and carbon cycle feedbacks. Two long-term through fall exclusion experiments (TFE) provided novel observations of Amazonian ecosystem responses under drought. These experiments also provided a great opportunity to evaluate and improve models' behavior under drought. While current DGVMs use a wide array of algorithms to represent drought effect on ecosystem, most are associated with large uncertainty for representing drought-induced mortality, and require updating to include current information of physiological processes. During very strong droughts, the leaves desiccate and stems may undergo catastrophic embolism. However, even before that point, stomata close, to minimize excessive water loss and risk of hydraulic failure, which reduces carbon assimilation. Here, we describe a new parameterization of the stomatal conductance and mortality processes induced by drought using the ORCHIDEE-CAN dynamic vegetation model and test it using the two TFE results. We implemented a direct climate effect on mortality through catastrophic stem embolism using a new hydraulic architecture to represent the hydraulic potential gradient from the soil to the leaves based on vulnerability curves, and tree capacitance. In addition, growth primary productivity and transpiration are down-regulated by the hydraulic architecture in case of drought through stomatal conductance, which depends on the hydraulic potential of the leaf. We also explored the role of non structural carbohydrates (NSC) on hydraulic failure and mortality following the idea that stored NSC serves a critical osmotic function. Our results suggest that models have the capacity to represent drought induced individual mortality from a mechanistic perspective allowing a better understanding of the drought impacts on carbon cycle and forest structure in the tropics.

Tree Diametric Increment and Litterfall Production in an Eastern Amazonian Forest: the Role of Functional Groups

NASA Astrophysics Data System (ADS)

Camargo, P. B. D.; Ferreira, M. L.; Oliveira Junior, R. C.; Saleska, S. R.

2014-12-01

Tree growth is a biotic variable of great importance in understanding the dynamics of tree communities and may be used as a tool in studies of biological or climate modeling. Some climate models predict more recurrent climate anomalies in this century, which may alter the functioning of tropical forests with serious structural and demographic implications. The present study aimed to evaluate the profile of tree growth and litterfall production in an eastern Amazon forest, which has suffered recent climatic disturbances. We contrasted different functional groups based on wood density (stem with 0.55; 0.56-0.7; >0.7 g cm-3), light availability (crown illumination index; high illuminated crown - IIC1 until shaded crown - IIC5), and, size class (trees 10-22.5; 22.6-35; 35.1-55; 55,1-90; >90 cm dbh). Tree diameter increment was monthly measured from November 2011 to September 2013 by using dendrometer bands installed on 850 individuals from different families. Litterfall was collected in 64 circular traps, oven dried and weighed, separated into leaves, twigs, reproductive parts and miscellaneous. During the rainy season the sampled trees had the highest rates of tree diametric increment. When analyzing the data by functional groups, large trees had faster growth, but when grouped by wood density, trees with wood density up to 0.55 and between 0.56 and 0.7 g cm-3 had the fastest rates of growth. When grouped by crown illumination index, trees exposed to higher levels of light grew more in comparison to partially shaded trees. Maximum daily air temperature and precipitation were the most important environmental variables in determining the diametric increment profile of the trees. Litterfall production was estimated to be 7.1 Mg ha-1.year-1 and showed a strong seasonal pattern, with dry season production being higher than in the rainy season. Leaves formed the largest fraction of the litterfall, followed by twigs, reproductive parts, and finally miscellaneous. These results show that the profile of tree diametric growth and litterfall production are recorded at close intervals in the preterit analyzes in the same study area and highlights the efficiency of functional groups in determining the tree growth profile.

Novel Numerical Algorithms for Sensing, Discrimination, and Control

DTIC Science & Technology

1990-03-09

Boas87], and Cross WVD (XWVD) [Boas89]. A modified XWVD is especially useful because it minimizes the number of cross terms or ghosts that corrupt...between real events. If the signal strength is high, then these ghosts may even hide or cover useful returns. We do know that the cross terms can be...modified XWVD is especially useful because it minimizes the number of cross terms or ghosts that corrupt spin rate identification. Autoregressive

Evidence for viable, non-clonal but fatherless Boa constrictors.

PubMed

Booth, Warren; Johnson, Daniel H; Moore, Sharon; Schal, Coby; Vargo, Edward L

2011-04-23

Parthenogenesis in vertebrates is considered an evolutionary novelty. In snakes, all of which exhibit genetic sex determination with ZZ : ZW sex chromosomes, this rare form of asexual reproduction has failed to yield viable female WW offspring. Only through complex experimental manipulations have WW females been produced, and only in fish and amphibians. Through microsatellite DNA fingerprinting, we provide the first evidence of facultative parthenogenesis in a Boa constrictor, identifying multiple, viable, non-experimentally induced females for the first time in any vertebrate lineage. Although the elevated homozygosity of the offspring in relation to the mother suggests that the mechanism responsible may be terminal fusion automixis, no males were produced, potentially indicating maternal sex chromosome hemizygosity (WO). These findings provide the first evidence of parthenogenesis in the family Boidae (Boas), and suggest that WW females may be more common within basal reptilian lineages than previously assumed.

FREUD, JUNG AND BOAS: THE PSYCHOANALYTIC ENGAGEMENT WITH ANTHROPOLOGY REVISITED.

PubMed

Kenny, Robert

2015-06-20

Sigmund Freud's and C. G. Jung's turn to evolutionist anthropological material after 1909 is usually seen as a logical progression of their long-term interest in such material. It is also seen that they used this material ignorant of the significant challenges to the evolutionist paradigm underpinning such material, in particular the challenges led by Franz Boas. This paper argues otherwise: that both psychologists' turnings to such material was a new development, that neither had shown great interest in such material before 1909, and that their turnings to such material, far from being taken in ignorance of the challenges to evolutionist anthropology, were engagements with those challenges, because the evolutionist paradigm lay at the base of psychoanalysis. It argues that it is no coincidence that this engagement occurred after their return from America in 1909, where they had come into first-hand contact with the challenges of Franz Boas.

Safety assessment and detection method of genetically modified Chinese Kale (Brassica oleracea cv. alboglabra ).

PubMed

Lin, Chih-Hui; Lu, Chien-Te; Lin, Hsin-Tang; Pan, Tzu-Ming

2009-03-11

Sporamins are tuberous storage proteins and account for 80% of soluble protein in sweet potato tubers with trypsin-inhibitory activity. The expression of sporamin protein in transgenic Chinese kale (line BoA 3-1) conferred insecticidal activity toward corn earworm [ Helicoverpa armigera (Hubner)] in a previous report. In this study, we present a preliminary safety assessment of transgenic Chinese kale BoA 3-1. Bioinformatic and simulated gastric fluid (SGF) analyses were performed to evaluate the allergenicity of sporamin protein. The substantial equivalence between transgenic Chinese kale and its wild-type host has been demonstrated by the comparison of important constituents. A reliable real-time polymerase chain reaction (PCR) detection method was also developed to control sample quality. Despite the results of most evaluations in this study being negative, the safety of sporamin in transgenic Chinese kale BoA 3-1 was uncluded because of the allergenic risk revealed by bioinformatic analysis.

Freud, Jung and Boas: the psychoanalytic engagement with anthropology revisited

PubMed Central

Kenny, Robert

2015-01-01

Sigmund Freud's and C. G. Jung's turn to evolutionist anthropological material after 1909 is usually seen as a logical progression of their long-term interest in such material. It is also seen that they used this material ignorant of the significant challenges to the evolutionist paradigm underpinning such material, in particular the challenges led by Franz Boas. This paper argues otherwise: that both psychologists' turnings to such material was a new development, that neither had shown great interest in such material before 1909, and that their turnings to such material, far from being taken in ignorance of the challenges to evolutionist anthropology, were engagements with those challenges, because the evolutionist paradigm lay at the base of psychoanalysis. It argues that it is no coincidence that this engagement occurred after their return from America in 1909, where they had come into first-hand contact with the challenges of Franz Boas. PMID:26665301

Evidence for viable, non-clonal but fatherless Boa constrictors

PubMed Central

Booth, Warren; Johnson, Daniel H.; Moore, Sharon; Schal, Coby; Vargo, Edward L.

2011-01-01

Parthenogenesis in vertebrates is considered an evolutionary novelty. In snakes, all of which exhibit genetic sex determination with ZZ : ZW sex chromosomes, this rare form of asexual reproduction has failed to yield viable female WW offspring. Only through complex experimental manipulations have WW females been produced, and only in fish and amphibians. Through microsatellite DNA fingerprinting, we provide the first evidence of facultative parthenogenesis in a Boa constrictor, identifying multiple, viable, non-experimentally induced females for the first time in any vertebrate lineage. Although the elevated homozygosity of the offspring in relation to the mother suggests that the mechanism responsible may be terminal fusion automixis, no males were produced, potentially indicating maternal sex chromosome hemizygosity (WO). These findings provide the first evidence of parthenogenesis in the family Boidae (Boas), and suggest that WW females may be more common within basal reptilian lineages than previously assumed. PMID:21047849

A Comparative Study of Landsat TM and SPOT HRG Images for Vegetation Classification in the Brazilian Amazon.

PubMed

Lu, Dengsheng; Batistella, Mateus; de Miranda, Evaristo E; Moran, Emilio

2008-01-01

Complex forest structure and abundant tree species in the moist tropical regions often cause difficulties in classifying vegetation classes with remotely sensed data. This paper explores improvement in vegetation classification accuracies through a comparative study of different image combinations based on the integration of Landsat Thematic Mapper (TM) and SPOT High Resolution Geometric (HRG) instrument data, as well as the combination of spectral signatures and textures. A maximum likelihood classifier was used to classify the different image combinations into thematic maps. This research indicated that data fusion based on HRG multispectral and panchromatic data slightly improved vegetation classification accuracies: a 3.1 to 4.6 percent increase in the kappa coefficient compared with the classification results based on original HRG or TM multispectral images. A combination of HRG spectral signatures and two textural images improved the kappa coefficient by 6.3 percent compared with pure HRG multispectral images. The textural images based on entropy or second-moment texture measures with a window size of 9 pixels × 9 pixels played an important role in improving vegetation classification accuracy. Overall, optical remote-sensing data are still insufficient for accurate vegetation classifications in the Amazon basin.

Isoprene over the Amazon Basin

NASA Technical Reports Server (NTRS)

Rasmussen, R. A.; Khalil, M. A. K.

1988-01-01

Data obtained during the 1985 ABLE expedition to the Amazon are used to describe the diurnal and vertical variations of isoprene. Isoprene is a natural hydrocarbon emitted by many species of trees, particularly those in tropical forests. The concentrations of isoprene at lower levels in the atmosphere undergo large diurnal variations, with the highest concentrations during midday and the lowest during the night. At ground level, outside the forest, peak concentrations of about 3-parts per billion by volume (ppbv) of isoprene were observed around midday. Concentrations were nearly zero before sunrise, increased to their maximum values during the day, and declined after sunset. Concentrations of 1-2 ppbv of isoprene were observed up to 300 m. Near the canopy level, up to 8 ppbv of isoprene were observed. In the forest, concentrations are generally quite low below the canopy and are highest at the level of the canopy. Since the reaction of isoprene with OH radicals is extremely fast, its concentrations fall off rapidly with altitude, so that practically none of it was seen above the boundary layer. During nighttime, however, concentrations comparable to daytime values were observed at altitudes of 300 m and above.

A Comparative Study of Landsat TM and SPOT HRG Images for Vegetation Classification in the Brazilian Amazon

PubMed Central

Lu, Dengsheng; Batistella, Mateus; de Miranda, Evaristo E.; Moran, Emilio

2009-01-01

Complex forest structure and abundant tree species in the moist tropical regions often cause difficulties in classifying vegetation classes with remotely sensed data. This paper explores improvement in vegetation classification accuracies through a comparative study of different image combinations based on the integration of Landsat Thematic Mapper (TM) and SPOT High Resolution Geometric (HRG) instrument data, as well as the combination of spectral signatures and textures. A maximum likelihood classifier was used to classify the different image combinations into thematic maps. This research indicated that data fusion based on HRG multispectral and panchromatic data slightly improved vegetation classification accuracies: a 3.1 to 4.6 percent increase in the kappa coefficient compared with the classification results based on original HRG or TM multispectral images. A combination of HRG spectral signatures and two textural images improved the kappa coefficient by 6.3 percent compared with pure HRG multispectral images. The textural images based on entropy or second-moment texture measures with a window size of 9 pixels × 9 pixels played an important role in improving vegetation classification accuracy. Overall, optical remote-sensing data are still insufficient for accurate vegetation classifications in the Amazon basin. PMID:19789716

Impacts of hydroelectric dams on alluvial riparian plant communities in Eastern Brazilian Amazonian.

PubMed

Ferreira, Leandro Valle; Cunha, Denise A; Chaves, Priscilla P; Matos, Darley C L; Parolin, Pia

2013-09-01

The major rivers of the Amazon River basin and their biota are threatened by the planned construction of large hydroelectric dams that are expected to have strong impacts on floodplain plant communities. The present study presents forest inventories from three floodplain sites colonized by alluvial riparian vegetation in the Tapajós, Xingu and Tocantins River basins in eastern Amazonian. Results indicate that tree species of the highly specialized alluvial riparian vegetation are clearly distinct among the three river basins, although they are not very distinct from each other and environmental constraints are very similar. With only 6 of 74 species occurring in all three inventories, most tree and shrub species are restricted to only one of the rivers, indicating a high degree of local distribution. Different species occupy similar environmental niches, making these fragile riparian formations highly valuable. Conservation plans must consider species complementarily when decisions are made on where to place floodplain forest conservation units to avoid the irreversible loss of unique alluvial riparian vegetation biodiversity.

Neotropical Thoasia Liebke, 1939 and Straneotia Mateu, 1961 of the Cryptobatida group, subtribe Agrina: Taxonomic revisions with notes on their ways of life (Insecta, Coleoptera, Carabidae, Lebiini)

PubMed Central

Erwin, Terry L.; Aldebron, Charlotte

2018-01-01

Abstract Thoasia Liebke, 1939 and Straneotia Mateu, 1961 of the Cryptobatida group, subtribe Agrina, Lebiini, living in the Neotropics are diagnosed, described, and illustrated. Occurrences of known species ranges are limited to the northern and western Amazon Basin and Guyana Shield. The following species are described as new: Thoasia surinamensis Erwin & Aldebron, sp. n., Suriname, Thoasia pterosmaragdos Aldebron & Erwin, sp. n., French Guiana, Thoasia manu Erwin & Aldebron, sp. n., Ecuador, Perú; Straneotia cylindroceps Erwin & Aldebron, sp. n., French Guiana, Straneotia confundis Aldebron & Erwin, sp. n., Ecuador, and Straneotia moi Aldebron & Erwin, sp. n., French Guiana. Two of these species, Thoasia manu and Straneotia moi are known from adults collected by insecticidal fogging of lowland rainforest trees, and these trees are listed in their respective descriptions. The following species are redescribed: Thoasia rugifrons Liebke, 1939, French Guiana, Venezuela; Straneotia freyi Mateu, 1961, Brazil; Straneotia amazonica Mateu, 1961, Brazil. PMID:29670431

Fire-mediated dieback and compositional cascade in an Amazonian forest.

PubMed

Barlow, Jos; Peres, Carlos A

2008-05-27

The only fully coupled land-atmosphere global climate model predicts a widespread dieback of Amazonian forest cover through reduced precipitation. Although these predictions are controversial, the structural and compositional resilience of Amazonian forests may also have been overestimated, as current vegetation models fail to consider the potential role of fire in the degradation of forest ecosystems. We examine forest structure and composition in the Arapiuns River basin in the central Brazilian Amazon, evaluating post-fire forest recovery and the consequences of recurrent fires for the patterns of dominance of tree species. We surveyed tree plots in unburned and once-burned forests examined 1, 3 and 9 years after an unprecedented fire event, in twice-burned forests examined 3 and 9 years after fire and in thrice-burned forests examined 5 years after the most recent fire event. The number of trees recorded in unburned primary forest control plots was stable over time. However, in both once- and twice-burned forest plots, there was a marked recruitment into the 10-20cm diameter at breast height tree size classes between 3 and 9 years post-fire. Considering tree assemblage composition 9 years after the first fire contact, we observed (i) a clear pattern of community turnover among small trees and the most abundant shrubs and saplings, and (ii) that species that were common in any of the four burn treatments (unburned, once-, twice- and thrice-burned) were often rare or entirely absent in other burn treatments. We conclude that episodic wildfires can lead to drastic changes in forest structure and composition, with cascading shifts in forest composition following each additional fire event. Finally, we use these results to evaluate the validity of the savannization paradigm.

Evidence for ecological divergence across a mosaic of soil types in an Amazonian tropical tree: Protium subserratum (Burseraceae).

PubMed

Misiewicz, Tracy M; Fine, Paul V A

2014-05-01

Soil heterogeneity is an important driver of divergent natural selection in plants. Neotropical forests have the highest tree diversity on earth, and frequently, soil specialist congeners are distributed parapatrically. While the role of edaphic heterogeneity in the origin and maintenance of tropical tree diversity is unknown, it has been posited that natural selection across the patchwork of soils in the Amazon rainforest is important in driving and maintaining tree diversity. We examined genetic and morphological differentiation among populations of the tropical tree Protium subserratum growing parapatrically on the mosaic of white-sand, brown-sand and clay soils found throughout western Amazonia. Nuclear microsatellites and leaf morphology were used to (i) quantify the extent of phenotypic and genetic divergence across habitat types, (ii) assess the importance of natural selection vs. drift in population divergence, (iii) determine the extent of hybridization and introgression across habitat types, (iv) estimate migration rates among populations. We found significant morphological variation correlated with soil type. Higher levels of genetic differentiation and lower migration rates were observed between adjacent populations found on different soil types than between geographically distant populations on the same soil type. PST -FST comparisons indicate a role for natural selection in population divergence among soil types. A small number of hybrids were detected suggesting that gene flow among soil specialist populations may occur at low frequencies. Our results suggest that edaphic specialization has occurred multiple times in P. subserratum and that divergent natural selection across edaphic boundaries may be a general mechanism promoting and maintaining Amazonian tree diversity. © 2014 John Wiley & Sons Ltd.

COS NUV Target Acquisition Monitor

NASA Astrophysics Data System (ADS)

Penton, Steven V.

2017-08-01

Visits PA, BA, & BB of this program verify all ACQ/IMAGE mode co-alignments by bootstrapping from PSA+MIRRORA. The assumption, which should be tested at some point, is that the PSA+MIRRORA WCA-to-PSA FSW offsets are still as accurate in defining the center of the PSA relative to the WCA as there were in SMOV. The details of the observations are given is the observing section.Visit PB was an on-hold contingency visit in case, for whatever reason, visit 2A of 14452, did not execute as planned in the fall of 2017. This program was replaced with a better program for aligning the FGGs so we needed to activate this visit to obtain the PSA/MIRRORA to PSA/MIRRORB ACQ/IMAGE alignment. Visit BA of this program takes back-to-back PSA/MIRRORB & BOA/MIRRORA ACQ/Images and images (with flashes) and also takes G230L, G285M as well as FUV LP3 G130M and G140L spectra to test the WCA-to-PSA offsets.Visit BB of this program takes back-to-back BOA/MIRRORA & BOA/MIRRORB ACQ/Images and images (with flashes) and also takes G225M, G185M, and FUV LP3 G160M spectra to test the WCA-to-PSA offsets. Visit BA of this program bootstraps off VIsit PB to co-align the PSA+MIRRORB ACQ/IMAGE mode to the BOA+MIRRORA. Visit BB of this program follows the style of Visit BA and bootstraps from the BOA+MIRRORA mode to the BOA+MIRRORB TA imaging mode. In all visits, lamp+target images are taken before and after the TA imaging mode that is being co-aligned (the second ACQ/IMAGE of the program.)All visits in this program are single orbit visits. This program is very similar to the NUV portion of the C24 version (14857). This program differs from the Cycle 23 version in that Visit PB (the old Visit 03) has been permanently upgraded from contingency to operational status. NOTE: Beginning with Cycle 25. ALL FUV exposures in this program have been moved to a separate monitoring program. This program will sequentially test the XD accuracy of FUV LP4 spectra. As needed, NUV ACQ/IMAGEs will reset the centering between grating tests.

Characterization of Aspergillus species on Brazil nut from the Brazilian Amazonian region and development of a PCR assay for identification at the genus level

PubMed Central

2014-01-01

Background Brazil nut is a protein-rich extractivist tree crop in the Amazon region. Fungal contamination of shells and kernel material frequently includes the presence of aflatoxigenic Aspergillus species from the section Flavi. Aflatoxins are polyketide secondary metabolites, which are hepatotoxic carcinogens in mammals. The objectives of this study were to identify Aspergillus species occurring on Brazil nut grown in different states in the Brazilian Amazon region and develop a specific PCR method for collective identification of member species of the genus Aspergillus. Results Polyphasic identification of 137 Aspergillus strains isolated from Brazil nut shell material from cooperatives across the Brazilian Amazon states of Acre, Amapá and Amazonas revealed five species, with Aspergillus section Flavi species A. nomius and A. flavus the most abundant. PCR primers ASP_GEN_MTSSU_F1 and ASP_GEN_MTSSU_R1 were designed for the genus Aspergillus, targeting a portion of the mitochondrial small subunit ribosomal RNA gene. Primer specificity was validated through both electronic PCR against target gene sequences at Genbank and in PCR reactions against DNA from Aspergillus species and other fungal genera common on Brazil nut. Collective differentiation of the observed section Flavi species A. flavus, A. nomius and A. tamarii from other Aspergillus species was possible on the basis of RFLP polymorphism. Conclusions Given the abundance of Aspergillus section Flavi species A. nomius and A. flavus observed on Brazil nut, and associated risk of mycotoxin accumulation, simple identification methods for such mycotoxigenic species are of importance for Hazard Analysis Critical Control Point system implementation. The assay for the genus Aspergillus represents progress towards specific PCR identification and detection of mycotoxigenic species. PMID:24885088

Genetic differentiation and trade among populations of peach palm ( Bactris gasipaes Kunth) in the Peruvian Amazon-implications for genetic resource management.

PubMed

Adin, A; Weber, J C; Sotelo Montes, C; Vidaurre, H; Vosman, B; Smulders, M J M

2004-05-01

Peach palm ( Bactris gasipaes Kunth) is cultivated for fruit and 'heart of palm', and is an important component of agroforestry systems in the Peruvian Amazon. In this study, AFLP was used to compare genetic diversity among domesticated populations along the Paranapura and Cuiparillo rivers, which are managed by indigenous and colonist farming communities, respectively. Gene diversity was 0.2629 for the populations in indigenous communities and 0.2534 in colonist communities. Genetic differentiation among populations ( G(st)) was 0.0377-0.0416 ( P<0.01) among populations along both rivers. There was no relation between genetic differentiation and the geographical location of populations along the rivers. Since natural seed dispersal by birds and rodents is thought to occur only across relatively short distances (100-200 m), it is likely that exchange of material by farmers and commercial traders is responsible for most of the 'long-distance' (over more than 20 km) gene flow among populations along the two rivers studied. This exchange of material may be important to counteract the effects of selection as well as genetic drift in small groups of trees in farmers' fields, much as in a metapopulation, and may account for the weak genetic differentiation between the two rivers ( G(st)=0.0249, P<0.01). A comparison with samples from other landraces in Peru and Brazil showed the existence of an isolation-by-distance structure up to 3,000 km, consistent with gene flow on a regional scale, likely mediated by trade in the Amazon Basin. Results are discussed with regard to practical implications for the management of genetic resources with farming communities.

The Amazon rainforest, climate change, and drought: How will what is below the surface affect the climate of tropical South America?

NASA Astrophysics Data System (ADS)

Harper, A.; Denning, A. S.; Baker, I.; Randall, D.; Dazlich, D.

2008-12-01

Several climate models have predicted an increase in long-term droughts in tropical South America due to increased greenhouse gases in the atmosphere. Although the Amazon rainforest is resilient to seasonal drought, multi-year droughts pose a definite problem for the ecosystem's health. Furthermore, drought- stressed vegetation participates in feedbacks with the atmosphere that can exacerbate drought. Namely, reduced evapotranspiration further dries out the atmosphere and affects the regional climate. Trees in the rainforest survive seasonal drought by using deep roots to access adequate stores of soil moisture. We investigate the climatic impacts of deep roots and soil moisture by coupling the Simple Biosphere (SiB3) model to Colorado State University's general circulation model (BUGS5). We compare two versions of SiB3 in the GCM during years with anomalously low rainfall. The first has strong vegetative stress due to soil moisture limitations. The second experiences less stress and has more realistic representations of surface biophysics. In the model, basin-wide reductions in soil moisture stress result in increased evapotranspiration, precipitation, and moisture recycling in the Amazon basin. In the savannah region of southeastern Brazil, the unstressed version of SiB3 produces decreased precipitation and weaker moisture flux, which is more in-line with observations. The improved simulation of precipitation and evaporation also produces a more realistic Bolivian high and Nordeste low. These changes highlight the importance of subsurface biophysics for the Amazonian climate. The presence of deep roots and soil moisture will become even more important if climate change brings more frequent droughts to this region in the future.

Deforestation fires versus understory fires in the Amazon Basin: What can we learn from satellite-based CO measurements?

NASA Astrophysics Data System (ADS)

Martinez-Alonso, S.; Deeter, M. N.; Worden, H. M.; Gille, J. C.; Clerbaux, C.; George, M.

2014-12-01

Deforestation fires in the Amazon Basin abound during the dry season (July to October) and are mostly associated with "slash and burn" agricultural practices. Understory fires occur when fires escape from deforested areas into neighboring standing forests; they spread slowly below the canopy, affecting areas that may be comparable or even larger than clear-cut areas. The interannual variabilities of understory fires and deforestation rates appear to be uncorrelated. Areas burned in understory fires are particularly extensive during droughts. Because they progress below a canopy of living trees, understory fires and their effects are not as easily identifiable from space as deforestation fires. Here we analyze satellite remote sensing products for CO and fire to investigate differences between deforestation fires and understory fires in the Amazon Basin under varying climatic conditions. The MOPITT (Measurements Of Pollution In The Troposphere) instrument on board NASA's Terra satellite has been measuring tropospheric CO since 2000, providing the longest global CO record to date. IASI (the Infrared Atmospheric Sounding Interferometer) A and B are two instruments on board METOP-A and -B, respectively, measuring, among others, CO since 2006 and 2012. MODIS (the Moderate Resolution Imaging Spectroradiometer) instruments on board NASA's Terra and Aqua satellites provide, among other products, a daily record of fires and their effects since 2000 and 2002, respectively. The temporal extent of all these datasets allows for the detailed analysis of drought versus non-drought years. Initial results indicate that MOPITT CO emissions during the dry season peaked in 2005, 2007, and 2010. Those were draught years and coincide with peaks in area affected by understory fires.

Assessing the impact of Amazonia logging with a new ecosystem model

NASA Astrophysics Data System (ADS)

Huang, M.; Asner, G. P.; Keller, M.; Berry, J. A.; Bustamante, M. M.

2006-12-01

Old-growth Amazonian forests play a fundamental role in the global climate and carbon cycle. Land use in old- growth tropical forests contributes to the accumulation of CO2 in the atmosphere and can alter the hydrological cycle, locally, regionally, and globally. Although deforestation, largely for the conversion of land to food crops or pastures, is the major destructive force in tropical forests worldwide (Houghton et al., 2000), other forest disturbances such as the selective logging have also increased in frequency and extent. Selective logging causes widespread collateral damage to remaining trees, sub-canopy vegetation, and soils, with impacts on hydrological processes, erosion, fire, carbon storage, and plant and animal species. In this study, the impact of selective logging on the carbon budget of the Brazil Amazon region is assessed with a new 3-D version of the Carnegie-Ames-Stanford Approach (CASA) ecosystem model, which features: (1) an alternative way of estimating absorbed photosynthetically-active radiation (APAR) by taking advantage of new high-resolution maps of forest canopy gap fraction; (2) a pulse disturbance module to realistically modify the carbon pools after timber harvest; (3) a regrowth module considering changes in community composition; and (4) a radiative transfer module for charactering the dynamic 3-D light environment above the canopy and within gaps after logging. The model was calibrated and validated with field observations from the Large-scale Biosphere Atmosphere Experiment (LBA) and its sensitivity was evaluated with Monte Carlo simulations. The impacts of selected logging on regional carbon budget of the Brazilian Amazon were then assessed under different future climate change scenarios. Results from this study quantify the gross and net carbon storage effects of widespread logging practices throughout the Brazilian Amazon.

Triatoma maculata colonises urban domicilies in Boa Vista, Roraima, Brazil

PubMed Central

Ricardo-Silva, Alice; Gonçalves, Teresa Cristina Monte; Luitgards-Moura, José Francisco; Lopes, Catarina Macedo; da Silva, Silvano Pedrosa; Bastos, Amanda Queiroz; Vargas, Nathalia Coelho; Freitas, Maria-Rosa Goreti

2016-01-01

During a medical entomology course in Boa Vista, Roraima, colonies of Triatoma maculata closely associated with pigeon nests were observed in concrete air-conditioner box located on the external plastered and cemented walls of a modern brick-built apartment block. In only one eight-hole ceramic brick, located inside one air-conditioner box, 127 specimens of T. maculata were collected. T. maculata is a recognised vector of Trypanosoma cruzi in the surrounding area and its domiciliation increases the risk of Chagas disease transmission. PMID:27759767

Triatoma maculata colonises urban domicilies in Boa Vista, Roraima, Brazil.

PubMed

Ricardo-Silva, Alice; Gonçalves, Teresa Cristina Monte; Luitgards-Moura, José Francisco; Lopes, Catarina Macedo; Silva, Silvano Pedrosa da; Bastos, Amanda Queiroz; Vargas, Nathalia Coelho; Freitas, Maria-Rosa Goreti

2016-11-01

During a medical entomology course in Boa Vista, Roraima, colonies of Triatoma maculata closely associated with pigeon nests were observed in concrete air-conditioner box located on the external plastered and cemented walls of a modern brick-built apartment block. In only one eight-hole ceramic brick, located inside one air-conditioner box, 127 specimens of T. maculata were collected. T. maculata is a recognised vector of Trypanosoma cruzi in the surrounding area and its domiciliation increases the risk of Chagas disease transmission.

Water availability not fruitfall modulates the dry season distribution of frugivorous terrestrial vertebrates in a lowland Amazon forest

PubMed Central

Paredes, Omar Stalin Landázuri; Norris, Darren; de Oliveira, Tadeu Gomes

2017-01-01

Terrestrial vertebrate frugivores constitute one of the major guilds in tropical forests. Previous studies show that the meso-scale distribution of this group is only weakly explained by variables such as altitude and tree basal area in lowland Amazon forests. For the first time we test whether seasonally limiting resources (water and fallen fruit) affect the dry season distribution in 25 species of terrestrial vertebrates. To examine the effects of the spatial availability of fruit and water on terrestrial vertebrates we used a standardized, regularly spaced arrangement of camera-traps within 25km2 of lowland Amazon forest. Generalized linear models (GLMs) were then used to examine the influence of four variables (altitude, distance to large rivers, distance to nearest water, and presence vs absence of fruits) on the number of photos on five functional groups (all frugivores, small, medium, large and very large frugivores) and on seven of the most abundant frugivore species (Cuniculus paca, Dasyprocta leporina, Mazama americana, Mazama nemorivaga, Myoprocta acouchy, Pecari tajacu and Psophia crepitans). A total of 279 independent photos of 25 species were obtained from 900 camera-trap days. For most species and three functional groups, the variation in the number of photos per camera was significantly but weakly explained by the GLMs (deviance explained ranging from 6.2 to 48.8%). Generally, we found that the presence of water availability was more important than the presence of fallen fruit for the groups and species studied. Medium frugivores, large-bodied frugivores, and two of the more abundant species (C. paca and P. crepitans) were recorded more frequently closer to water bodies; while none of the functional groups nor the most abundant species showed any significant relationship with the presence of fallen fruit. Two functional groups and two of the seven most common frugivore species assessed in the GLMs showed significant results with species-specific responses to altitude. Our findings provide a more detailed understanding of how frugivorous vertebrates cope with periods of water and fruit scarcity in lowland Amazon forests. PMID:28301589

Current and future patterns of fire-induced forest degradation in Amazonia

NASA Astrophysics Data System (ADS)

De Faria, Bruno L.; Brando, Paulo M.; Macedo, Marcia N.; Panday, Prajjwal K.; Soares-Filho, Britaldo S.; Coe, Michael T.

2017-09-01

Amazon droughts directly increase forest flammability by reducing forest understory air and fuel moisture. Droughts also increase forest flammability indirectly by decreasing soil moisture, triggering leaf shedding, branch loss, and tree mortality—all of which contribute to increased fuel loads. These direct and indirect effects can cause widespread forest fires that reduce forest carbon stocks in the Amazon, with potentially important consequences for the global carbon cycle. These processes are expected to become more widespread, common, and intense as global climate changes, yet the mechanisms linking droughts, wildfires, and associated changes in carbon stocks remain poorly understood. Here, we expanded the capabilities of a dynamic forest carbon model to better represent (1) drought effects on carbon and fuel dynamics and (2) understory fire behavior and severity. We used the refined model to quantify changes in Pan-Amazon live carbon stocks as a function of the maximum climatological water deficit (MCWD) and fire intensity, under both historical and future climate conditions. We found that the 2005 and 2010 droughts increased potential fire intensity by 226 kW m-1 and 494 kW m-1, respectively. These increases were due primarily to increased understory dryness (109 kW m-1 in 2005; 124 kW m-1 in 2010) and altered forest structure (117 kW m-1 in 2005; 370 kW m-1 in 2010) effects. Combined, these historic droughts drove total simulated reductions in live carbon stocks of 0.016 (2005) and 0.027 (2010) PgC across the Amazon Basin. Projected increases in future fire intensity increased simulated carbon losses by up to 90% per unit area burned, compared with modern climate. Increased air temperature was the primary driver of changes in simulated future fire intensity, while reduced precipitation was secondary, particularly in the eastern portion of the Basin. Our results show that fire-drought interactions strongly affect live carbon stocks and that future climate change, combined with the synergistic effects of drought on forest flammability, may strongly influence the stability of tropical forests in the future.

Monitoring vegetation dynamics in the Amazon with RapidScat

NASA Astrophysics Data System (ADS)

van Emmerik, Tim; Steele-Dunne, Susan; Paget, Aaron C.; van de Giesen, Nick

2017-04-01

Several studies affiliated diurnal variations in radar backscatter over the Amazon [1,2] with vegetation water stress. Recent studies on tree and corn canopies [3,4] have demonstrated that during periods of low soil moisture availability, the total radar backscatter is primarily sensitive to changes in leaf water content, highlighting the potential of radar for water stress detection. The RapidScat mission (Ku-band, 13.4GHz), mounted on the International Space Station, observes the Earth in a non-sun-synchronous orbit [5]. This unique orbit allows for reconstructing diurnal cycles of radar backscatter. We hypothesize that the state of the canopy is a significant portion of the diurnal variations observed in the radar backscatter. Recent, yet inconclusive, analyses support the theory of the impact of vegetation water content on diurnal variation in RapidScat radar backscatter over the Amazon and Congo. Linking ground measurements of canopy dynamics to radar backscatter will allow further exploration of the possibilities for monitoring vegetation dynamics. Our presentation focuses of two parts. First, we reconstruct diurnal cycles of RapidScat backscatter over the Amazon, and study its variation over time. Second, we analyze the pre-dawn backscatter over time. The water content at this time of day is a measure of water stress, and might therefore be visible in the backscatter time series. References [1] Frolking, S., et al.: "Tropical forest backscatter anomaly evident in SeaWinds scatterometer morning overpass data during 2005 drought in Amazonia", Remote Sensing of Environment, 2011. [2] Jaruwatanadilok, S., and B. Stiles: "Trends and variation in Ku-band backscatter of natural targets on land observed in QuikSCAT data", IEEE Transactions on Geoscience and Remote Sensing , 2014. [3] Steele-Dunne, S., et al.: "Using diurnal variation in backscatter to detect vegetation water stress", IEEE Transactions on Geoscience and Remote Sensing, 2012. [4] van Emmerik, T., et al.: "Impact of diurnal variation in vegetation water content on radar backscatter from maize during water stress", IEEE Transactions on Geoscience and Remote Sensing, 2015. [5] Paget, A., et al.: "RapidScat Diurnal Cycles Over Land", IEEE Transactions on Geoscience and Remote Sensing, 2016.

Water availability not fruitfall modulates the dry season distribution of frugivorous terrestrial vertebrates in a lowland Amazon forest.

PubMed

Paredes, Omar Stalin Landázuri; Norris, Darren; Oliveira, Tadeu Gomes de; Michalski, Fernanda

2017-01-01

Terrestrial vertebrate frugivores constitute one of the major guilds in tropical forests. Previous studies show that the meso-scale distribution of this group is only weakly explained by variables such as altitude and tree basal area in lowland Amazon forests. For the first time we test whether seasonally limiting resources (water and fallen fruit) affect the dry season distribution in 25 species of terrestrial vertebrates. To examine the effects of the spatial availability of fruit and water on terrestrial vertebrates we used a standardized, regularly spaced arrangement of camera-traps within 25km2 of lowland Amazon forest. Generalized linear models (GLMs) were then used to examine the influence of four variables (altitude, distance to large rivers, distance to nearest water, and presence vs absence of fruits) on the number of photos on five functional groups (all frugivores, small, medium, large and very large frugivores) and on seven of the most abundant frugivore species (Cuniculus paca, Dasyprocta leporina, Mazama americana, Mazama nemorivaga, Myoprocta acouchy, Pecari tajacu and Psophia crepitans). A total of 279 independent photos of 25 species were obtained from 900 camera-trap days. For most species and three functional groups, the variation in the number of photos per camera was significantly but weakly explained by the GLMs (deviance explained ranging from 6.2 to 48.8%). Generally, we found that the presence of water availability was more important than the presence of fallen fruit for the groups and species studied. Medium frugivores, large-bodied frugivores, and two of the more abundant species (C. paca and P. crepitans) were recorded more frequently closer to water bodies; while none of the functional groups nor the most abundant species showed any significant relationship with the presence of fallen fruit. Two functional groups and two of the seven most common frugivore species assessed in the GLMs showed significant results with species-specific responses to altitude. Our findings provide a more detailed understanding of how frugivorous vertebrates cope with periods of water and fruit scarcity in lowland Amazon forests.

Seasonality of Central Amazon Forest Leaf Flush Using Tower-Mounted RGB Camera

NASA Astrophysics Data System (ADS)

Wu, J.; Nelson, B. W.; Tavares, J. V.; Valeriano, D. M.; Lopes, A. P.; Marostica, S. F.; Martins, G.; Prohaska, N.; Albert, L.; De Araujo, A. C.; Manzi, A. O.; Saleska, S. R.; Huete, A. R.

2014-12-01

Tower-mounted RGB cameras can contribute data to the debate on seasonality of photosynthesis in Amazon upland forests and to improved modelling of forest response to climate change. In late 2010 we began monitoring upper crown surfaces of ~65 living trees or vines from a 54m tall eddy-flux tower on a well-drained clay-soil plateau. This Central Amazon site (60.2091 W, 2.6092 S) is in a large forest reserve. We deployed a Stardot Netcam XL RGB camera with a 1024 x 768 resolution CMOS sensor, 66o HFOV lens, fixed oblique south view, fixed iris, fixed white balance and auto-exposure. Images were logged every 15 seconds to a passively cooled FitPC2i with heat-tolerant SSD drive. Camera and PC automatically rebooted after power outages. Here we report results for two full years, from 1 Dec 2011 through 30 Nov 2013. Images in six day intervals were selected near local noon for homogeneous diffuse lighting under cloudy sky and for a standard reflected radiance (± 10%). Crowns showing two easily recognized phenophases were tallied: (1) massive flushing of new light-green leaves and (2) complete or nearly complete leaf loss. On average, 60% of live crowns flushed a massive amount of new leaves each year. Each crown flush was completed within 30 days. During the five driest months (Jun-Oct), 44% of all live crowns, on average, exhibited such massive leaf flush. In the five wettest months (Dec-Apr) only 11% of live crowns mass-flushed new leaves. In each year 23% of all live crowns became deciduous, usually a brief (1-2 week) preamble to flushing. Additional crowns lost old dark-green leaves partially and more gradually, becoming semi-deciduous prior to flushing. From these two years of camera data we infer that highly efficient leaves of 2-6 months age (high maximum carboxylation rate) are most abundant from the late dry season (October) through the mid wet season (March). This coincides with peak annual photosynthesis (Gross Ecosystem Productivity) reported for this same Central Amazon site using eddy flux methods.

Metastability for discontinuous dynamical systems under Lévy noise: Case study on Amazonian Vegetation.

PubMed

Serdukova, Larissa; Zheng, Yayun; Duan, Jinqiao; Kurths, Jürgen

2017-08-24

For the tipping elements in the Earth's climate system, the most important issue to address is how stable is the desirable state against random perturbations. Extreme biotic and climatic events pose severe hazards to tropical rainforests. Their local effects are extremely stochastic and difficult to measure. Moreover, the direction and intensity of the response of forest trees to such perturbations are unknown, especially given the lack of efficient dynamical vegetation models to evaluate forest tree cover changes over time. In this study, we consider randomness in the mathematical modelling of forest trees by incorporating uncertainty through a stochastic differential equation. According to field-based evidence, the interactions between fires and droughts are a more direct mechanism that may describe sudden forest degradation in the south-eastern Amazon. In modeling the Amazonian vegetation system, we include symmetric α-stable Lévy perturbations. We report results of stability analysis of the metastable fertile forest state. We conclude that even a very slight threat to the forest state stability represents L´evy noise with large jumps of low intensity, that can be interpreted as a fire occurring in a non-drought year. During years of severe drought, high-intensity fires significantly accelerate the transition between a forest and savanna state.

Ranging pattern and use of space in a group of red howler monkeys (Alouatta seniculus) in a southeastern Colombian rainforest.

PubMed

Palacios, E; Rodriguez, A

2001-12-01

We studied a group of red howler monkeys (Alouatta seniculus) bordering a lake in an eastern Colombian Amazon rainforest for 10 months. The group used an area of 182 ha located mainly on Pleistocene terrace forest and had no overlap with other howler home ranges. Home range use varied through the year as a consequence of fruit and leaf abundance. For example, during the fruit scarcity season the group used an area of flooded forest nearly exclusively, indicating that at least for a portion of the year they are habitat specialists. Two areas intensively used by the group were identified, representing 17.6 % of the home range, and within which 56.9 % of the feeding trees were located. Overall density of feeding trees within the group's home range was very low (1.12 trees/ha). Home range size, as well as mean length of daily ranges (1,150 m), is the largest reported for this species to date, and it is likely a consequence of the diminished productivity of the plant communities on poor soil. Our results give an interesting example of the ranging behavior of this primate, which clearly differs from previous descriptions of red howlers. Copyright 2001 Wiley-Liss, Inc.

Calycophyllum spruceanum (Benth.), the Amazonian "Tree of Youth" Prolongs Longevity and Enhances Stress Resistance in Caenorhabditis elegans.

PubMed

Peixoto, Herbenya; Roxo, Mariana; Koolen, Hector; da Silva, Felipe; Silva, Emerson; Braun, Markus Santhosh; Wang, Xiaojuan; Wink, Michael

2018-02-27

The tree popularly known in Brazil as mulateiro or pau-mulato ( Calycophyllum spruceanum (Benth.) K. Schum.) is deeply embedded in the herbal medicine of the Amazon region. Different preparations of the bark are claimed to have anti-aging, antioxidant, antimicrobial, emollient, wound healing, hemostatic, contraceptive, stimulant, and anti-diabetic properties. The current study aims to provide the first step towards a science-based evidence of the beneficial effects of C. spruceanum in the promotion of longevity and in the modulation of age-related markers. For this investigation, we used the model system Caenorhabditis elegans to evaluate in vivo antioxidant and anti-aging activity of a water extract from C. spruceanum . To chemically characterize the extract, HPLC MS (High Performance Liquid Chromatography Mass Spectrometry)/MS analyses were performed. Five secondary metabolites were identified in the extract, namely gardenoside, 5-hydroxymorin, cyanidin, taxifolin, and 5-hydroxy-6-methoxycoumarin-7-glucoside. C. spruceanum extract was able to enhance stress resistance and to extend lifespan along with attenuation of aging-associated markers in C. elegans . The demonstrated bioactivities apparently depend on the DAF-16/FOXO pathway. The data might support the popular claims of mulateiro as the "tree of youth", however more studies are needed to clarify its putative benefits to human health.

Carbon Dynamics in Vegetation and Soils

NASA Technical Reports Server (NTRS)

Trumbore, Susan; Chambers, Jeffrey Q.; Camargo, Plinio; Martinelli, Luiz; Santos, Joaquim

2005-01-01

The overall goals of CD-08 team in Phase I were to quantify the contributions of different components of the carbon cycle to overall ecosystem carbon balance in Amazonian tropical forests and to undertake process studies at a number of sites along the eastern LBA transect to understand how and why these fluxes vary with site, season, and year. We divided this work into a number of specific tasks: (1) determining the average rate (and variability) of tree growth over the past 3 decades; (2) determining age demographics of tree populations, using radiocarbon to determine tree age; (3) assessing the rate of production and decomposition of dead wood debris; (4) determining turnover rates for organic matter in soils and the mean age of C respired from soil using radiocarbon measurements; and (5) comparing our results with models and constructing models to predict the potential of tropical forests to function as sources or sinks of C. This report summarizes the considerable progress made towards our original goals, which have led to increased understanding of the potential for central Amazon forests to act as sources or sinks of carbon with altered productivity. The overall picture of tropical forest C dynamics emerging from our Phase I studies suggests that the fraction of gross primary production allocated to growth in these forests is only 25-30%, as opposed to the 50% assumed by many ecosystem models. Consequent slow tree growth rates mean greater mean tree age for a given diameter, as reflected in our measurements and models of tree age. Radiocarbon measurements in leaf and root litter suggest that carbon stays in living tree biomass for several years up to a decade before being added to soils, where decomposition is rapid. The time lags predicted from 14C, when coupled with climate variation on similar time scales, can lead to significant interannual variation in net ecosystem C exchange.

Estimating babassu palm density using automatic palm tree detection with very high spatial resolution satellite images.

PubMed

Dos Santos, Alessio Moreira; Mitja, Danielle; Delaître, Eric; Demagistri, Laurent; de Souza Miranda, Izildinha; Libourel, Thérèse; Petit, Michel

2017-05-15

High spatial resolution images as well as image processing and object detection algorithms are recent technologies that aid the study of biodiversity and commercial plantations of forest species. This paper seeks to contribute knowledge regarding the use of these technologies by studying randomly dispersed native palm tree. Here, we analyze the automatic detection of large circular crown (LCC) palm tree using a high spatial resolution panchromatic GeoEye image (0.50 m) taken on the area of a community of small agricultural farms in the Brazilian Amazon. We also propose auxiliary methods to estimate the density of the LCC palm tree Attalea speciosa (babassu) based on the detection results. We used the "Compt-palm" algorithm based on the detection of palm tree shadows in open areas via mathematical morphology techniques and the spatial information was validated using field methods (i.e. structural census and georeferencing). The algorithm recognized individuals in life stages 5 and 6, and the extraction percentage, branching factor and quality percentage factors were used to evaluate its performance. A principal components analysis showed that the structure of the studied species differs from other species. Approximately 96% of the babassu individuals in stage 6 were detected. These individuals had significantly smaller stipes than the undetected ones. In turn, 60% of the stage 5 babassu individuals were detected, showing significantly a different total height and a different number of leaves from the undetected ones. Our calculations regarding resource availability indicate that 6870 ha contained 25,015 adult babassu palm tree, with an annual potential productivity of 27.4 t of almond oil. The detection of LCC palm tree and the implementation of auxiliary field methods to estimate babassu density is an important first step to monitor this industry resource that is extremely important to the Brazilian economy and thousands of families over a large scale. Copyright © 2017 Elsevier Ltd. All rights reserved.

Woody lianas increase in dominance and maintain compositional integrity across an Amazonian dam-induced fragmented landscape

PubMed Central

Peres, Carlos A.; Benchimol, Maíra; Bunnefeld, Lynsey; Dent, Daisy H.

2017-01-01

Tropical forest fragmentation creates insular biological communities that undergo species loss and changes in community composition over time, due to area- and edge-effects. Woody lianas thrive in degraded and secondary forests, due to their competitive advantage over trees in these habitats. Lianas compete both directly and indirectly with trees, increasing tree mortality and turnover. Despite our growing understanding of liana-tree dynamics, we lack detailed knowledge of the assemblage-level responses of lianas themselves to fragmentation, particularly in evergreen tropical forests. We examine the responses of both sapling and mature liana communities to landscape-scale forest insularization induced by a mega hydroelectric dam in the Brazilian Amazon. Detailed field inventories were conducted on islands created during reservoir filling, and in nearby mainland continuous forest. We assess the relative importance of variables associated with habitat fragmentation such as area, isolation, surrounding forest cover, fire and wind disturbance, on liana community attributes including abundance, basal area, diversity, and composition. We also explore patterns of liana dominance relative to tree saplings and adults ≥10 cm diameter at breast height. We find that 1) liana community composition remains remarkably similar across mainland continuous forest and islands, regardless of extreme area- and edge- effects and the loss of vertebrate dispersers in the latter; and 2) lianas are increasing in dominance relative to trees in the sapling layer in the most degraded islands, with both the amount of forest cover surrounding islands and fire disturbance history predicting liana dominance. Our data suggest that liana communities persist intact in isolated forests, regardless of extreme area- and edge-effects; while in contrast, tree communities simultaneously show evidence of increased turnover and supressed recruitment. These processes may lead to lianas becoming a dominant component of this dam-induced fragmented landscape in the future, due to their competitive advantage over trees in degraded forest habitats. Additional loss of tree biomass and diversity brought about through competition with lianas, and the concurrent loss of carbon storage, should be accounted for in impact assessments of future dam development. PMID:29040272

Woody lianas increase in dominance and maintain compositional integrity across an Amazonian dam-induced fragmented landscape.

PubMed

Jones, Isabel L; Peres, Carlos A; Benchimol, Maíra; Bunnefeld, Lynsey; Dent, Daisy H

2017-01-01

Tropical forest fragmentation creates insular biological communities that undergo species loss and changes in community composition over time, due to area- and edge-effects. Woody lianas thrive in degraded and secondary forests, due to their competitive advantage over trees in these habitats. Lianas compete both directly and indirectly with trees, increasing tree mortality and turnover. Despite our growing understanding of liana-tree dynamics, we lack detailed knowledge of the assemblage-level responses of lianas themselves to fragmentation, particularly in evergreen tropical forests. We examine the responses of both sapling and mature liana communities to landscape-scale forest insularization induced by a mega hydroelectric dam in the Brazilian Amazon. Detailed field inventories were conducted on islands created during reservoir filling, and in nearby mainland continuous forest. We assess the relative importance of variables associated with habitat fragmentation such as area, isolation, surrounding forest cover, fire and wind disturbance, on liana community attributes including abundance, basal area, diversity, and composition. We also explore patterns of liana dominance relative to tree saplings and adults ≥10 cm diameter at breast height. We find that 1) liana community composition remains remarkably similar across mainland continuous forest and islands, regardless of extreme area- and edge- effects and the loss of vertebrate dispersers in the latter; and 2) lianas are increasing in dominance relative to trees in the sapling layer in the most degraded islands, with both the amount of forest cover surrounding islands and fire disturbance history predicting liana dominance. Our data suggest that liana communities persist intact in isolated forests, regardless of extreme area- and edge-effects; while in contrast, tree communities simultaneously show evidence of increased turnover and supressed recruitment. These processes may lead to lianas becoming a dominant component of this dam-induced fragmented landscape in the future, due to their competitive advantage over trees in degraded forest habitats. Additional loss of tree biomass and diversity brought about through competition with lianas, and the concurrent loss of carbon storage, should be accounted for in impact assessments of future dam development.

Evidence of new species for malaria vector Anopheles nuneztovari sensu lato in the Brazilian Amazon region.

PubMed

Scarpassa, Vera Margarete; Cunha-Machado, Antonio Saulo; Saraiva, José Ferreira

2016-04-12

Anopheles nuneztovari sensu lato comprises cryptic species in northern South America, and the Brazilian populations encompass distinct genetic lineages within the Brazilian Amazon region. This study investigated, based on two molecular markers, whether these lineages might actually deserve species status. Specimens were collected in five localities of the Brazilian Amazon, including Manaus, Careiro Castanho and Autazes, in the State of Amazonas; Tucuruí, in the State of Pará; and Abacate da Pedreira, in the State of Amapá, and analysed for the COI gene (Barcode region) and 12 microsatellite loci. Phylogenetic analyses were performed using the maximum likelihood (ML) approach. Intra and inter samples genetic diversity were estimated using population genetics analyses, and the genetic groups were identified by means of the ML, Bayesian and factorial correspondence analyses and the Bayesian analysis of population structure. The Barcode region dataset (N = 103) generated 27 haplotypes. The haplotype network suggested three lineages. The ML tree retrieved five monophyletic groups. Group I clustered all specimens from Manaus and Careiro Castanho, the majority of Autazes and a few from Abacate da Pedreira. Group II clustered most of the specimens from Abacate da Pedreira and a few from Autazes and Tucuruí. Group III clustered only specimens from Tucuruí (lineage III), strongly supported (97 %). Groups IV and V clustered specimens of A. nuneztovari s.s. and A. dunhami, strongly (98 %) and weakly (70 %) supported, respectively. In the second phylogenetic analysis, the sequences from GenBank, identified as A. goeldii, clustered to groups I and II, but not to group III. Genetic distances (Kimura-2 parameters) among the groups ranged from 1.60 % (between I and II) to 2.32 % (between I and III). Microsatellite data revealed very high intra-population genetic variability. Genetic distances showed the highest and significant values (P = 0.005) between Tucuruí and all the other samples, and between Abacate da Pedreira and all the other samples. Genetic distances, Bayesian (Structure and BAPS) analyses and FCA suggested three distinct biological groups, supporting the barcode region results. The two markers revealed three genetic lineages for A. nuneztovari s.l. in the Brazilian Amazon region. Lineages I and II may represent genetically distinct groups or species within A. goeldii. Lineage III may represent a new species, distinct from the A. goeldii group, and may be the most ancestral in the Brazilian Amazon. They may have differences in Plasmodium susceptibility and should therefore be investigated further.

Evaluation of radiographic, computed tomographic, and cadaveric anatomy of the head of boa constrictors.

PubMed

Banzato, Tommaso; Russo, Elisa; Di Toma, Anna; Palmisano, Giuseppe; Zotti, Alessandro

2011-12-01

To evaluate the radiographic, computed tomographic (CT), and cadaveric anatomy of the head of boa constrictors. 4 Boa constrictor imperator cadavers. Cadavers weighed 3.4 to 5.6 kg and had a body length ranging from 189 to 221 cm. Radiographic and CT images were obtained with a high-detail screen-film combination, and conventional CT was performed with a slice thickness of 1.5 mm. Radiographic images were obtained in ventrodorsal, dorsoventral, and left and right laterolateral recumbency; CT images were obtained with the animals positioned in ventral recumbency directly laying on a plastic support. At the end of the radiographic and CT imaging session, 2 heads were sectioned following a stratigraphic approach; the other 2, carefully maintained in the same position on the plastic support, were moved into a freezer (-20°C) until completely frozen and then sectioned into 3-mm slices, respecting the imaging protocol. The frozen sections were cleaned and then photographed on each side. Anatomic structures were identified and labeled on gross anatomic images and on the corresponding CT or radiographic image with the aid of available literature. Radiographic and CT images provided high detail for visualization of bony structures; soft tissues were not easily identified on radiographic and CT images. Results provide an atlas of stratigraphic and cross-sectional gross anatomy and radiographic and CT anatomy of the heads of boa constrictors that might be useful in the interpretation of any imaging modality in this species.

Immunohistochemical Detection of a Unique Protein within Cells of Snakes Having Inclusion Body Disease, a World-Wide Disease Seen in Members of the Families Boidae and Pythonidae

PubMed Central

Chang, Li-Wen; Fu, Ann; Wozniak, Edward; Chow, Marjorie; Duke, Diane G.; Green, Linda; Kelley, Karen; Hernandez, Jorge A.; Jacobson, Elliott R.

2013-01-01

Inclusion body disease (IBD) is a worldwide disease in captive boa constrictors (boa constrictor) and occasionally in other snakes of the families Boidae and Pythonidae. The exact causative agent(s) and pathogenesis are not yet fully understood. Currently, diagnosis of IBD is based on the light microscopic identification of eosinophilic intracytoplasmic inclusion bodies in hematoxylin and eosin stained tissues or blood smears. An antigenically unique 68 KDa protein was identified within the IBD inclusion bodies, called IBD protein. A validated immuno-based ante-mortem diagnostic test is needed for screening snakes that are at risk of having IBD. In this study, despite difficulties in solubilizing semi-purified inclusion bodies, utilizing hybridoma technology a mouse anti-IBD protein monoclonal antibody (MAB) was produced. The antigenic specificity of the antibody was confirmed and validated by western blots, enzyme-linked immunosorbent assay, immuno-transmission electron microscopy, and immunohistochemical staining. Paraffin embedded tissues of IBD positive and negative boa constrictors (n=94) collected from 1990 to 2011 were tested with immunohistochemical staining. In boa constrictors, the anti-IBDP MAB had a sensitivity of 83% and specificity of 100% in detecting IBD. The antibody also cross-reacted with IBD inclusion bodies in carpet pythons (Morelia spilota) and a ball python (python regius). This validated antibody can serve as a tool for the development of ante-mortem immunodiagnostic tests for IBD. PMID:24340066

Immunohistochemical detection of a unique protein within cells of snakes having inclusion body disease, a world-wide disease seen in members of the families Boidae and Pythonidae.

PubMed

Chang, Li-Wen; Fu, Ann; Wozniak, Edward; Chow, Marjorie; Duke, Diane G; Green, Linda; Kelley, Karen; Hernandez, Jorge A; Jacobson, Elliott R

2013-01-01

Inclusion body disease (IBD) is a worldwide disease in captive boa constrictors (boa constrictor) and occasionally in other snakes of the families Boidae and Pythonidae. The exact causative agent(s) and pathogenesis are not yet fully understood. Currently, diagnosis of IBD is based on the light microscopic identification of eosinophilic intracytoplasmic inclusion bodies in hematoxylin and eosin stained tissues or blood smears. An antigenically unique 68 KDa protein was identified within the IBD inclusion bodies, called IBD protein. A validated immuno-based ante-mortem diagnostic test is needed for screening snakes that are at risk of having IBD. In this study, despite difficulties in solubilizing semi-purified inclusion bodies, utilizing hybridoma technology a mouse anti-IBD protein monoclonal antibody (MAB) was produced. The antigenic specificity of the antibody was confirmed and validated by western blots, enzyme-linked immunosorbent assay, immuno-transmission electron microscopy, and immunohistochemical staining. Paraffin embedded tissues of IBD positive and negative boa constrictors (n=94) collected from 1990 to 2011 were tested with immunohistochemical staining. In boa constrictors, the anti-IBDP MAB had a sensitivity of 83% and specificity of 100% in detecting IBD. The antibody also cross-reacted with IBD inclusion bodies in carpet pythons (Morelia spilota) and a ball python (python regius). This validated antibody can serve as a tool for the development of ante-mortem immunodiagnostic tests for IBD.

Recommended CENWAVE Settings for NUV COS ACQ/PEAKXD Procedure

NASA Astrophysics Data System (ADS)

Indriolo, Nick; Plesha, Rachel; Penton, Steven V.

2017-05-01

Spectroscopic target acquisitions with COS begin with the ACQ/PEAKXD procedure, which centers the external target in the science aperture in the cross-dispersion direction. During this procedure the external target is observed through the Primary Science Aperture (PSA) or Bright Object Aperture (BOA) and the Pt-Ne hollow cathode lamp is flashed on to produce an emission line spectrum in the Wavelength Calibration Aperture(WCA). The separation between the centroids of the WCA and PSA (or BOA) spectra is measured and compared to the known separation between the WCA and the center of the PSA (or BOA). In this way, the slew required to move the target to the center of the PSA (BOA) in the cross-dispersion direction is determined. This procedure requires an accurate measurement of the center of the WCA spectrum in the cross-dispersion direction. Each CENWAVE setting has a different distribution of emission lines from the Pt-Ne lamp on the NUV detector. Due to effects such as lamp aging and optics select mechanism (OSM) drift, the flux in the WCA spectrum for a given CENWAVE can change with time, and it is possible that some settings do not provide enough flux to reliably measure the center of the WCA spectrum. In this ISR we use all available NUV WCA data from 2010 Jan 01 through 2016 Oct 07 to determine which CENWAVE settings are optimal for the ACQ/PEAKXD procedure. These optimal settings are recommended in the Cycle 25 COS Instrument Handbook.

Boverhof's App Earns Honorable Mention in Amazon's Web Services

Science.gov Websites

» Boverhof's App Earns Honorable Mention in Amazon's Web Services Competition News & Publications News Publications Facebook Google+ Twitter Boverhof's App Earns Honorable Mention in Amazon's Web Services by Amazon Web Services (AWS). Amazon officially announced the winners of its EC2 Spotathon on Monday

Lessons from forest FACE experiments provide guidance for Amazon-FACE science plan (Invited)

NASA Astrophysics Data System (ADS)

Norby, R. J.; Lapola, D. M.

2013-12-01

Free-air CO2 enrichment (FACE) experiments have provided novel insights into the ecological mechanisms controlling the cycling and storage of carbon in terrestrial ecosystems, and they provide a strong foundation for next-generation experiments in unexplored biomes. Specific lessons from FACE experiments include: (1) Carbon cycle responses are time-dependent because component processes have different rate constants: for example, net primary productivity is increased by elevated CO2, but the response may diminish with time as N cycling feedbacks become important. (2) Carbon partitioning patterns determine the fate of the extra C taken up by CO2-enriched plants, but partitioning responses remain an important challenge for ecosystem models. (3) The influence of N cycling on plant and ecosystem C cycling continues to be a critical uncertainty, and new experiments, especially in the tropics, must also consider P cycling. (4) Plant community structure can influence the ecosystem response to elevated CO2, but dynamic vegetation effects have not been adequately addressed. These experiences from FACE experiments in temperate forests are now guiding the development of a science plan for a FACE experiment in Amazonia. Models and small-scale experimental results agree that elevated CO2 will affect the metabolism of tropical ecosystems, but the qualitative and quantitative expression of the effects are largely unknown, representing a major source of uncertainty that limits our capacity to assess the vulnerability of the Amazon forest to climate change. Recognizing the high importance of the forests of the Amazon basin on global carbon, water, and energy cycles, biodiversity conservation, and the provision of essential services in Latin America, a consortium of Brazilian researchers and international collaborators have developed a science plan for Amazon-FACE. While the challenges presented both by infrastructure needs (roads, electricity, and provision of CO2) and biology (the size and diversity of the forest) are substantial, preliminary evaluation and past experience from temperate forest FACE experiments have supported the feasibility of an experiment comprising replicated 30-m diameter FACE plots in primary forest. The proposed site is the ZF2 research area 60 km north of Manaus and administered by Brazil's National Institute for Amazonia Research (INPA). The vegetation is representative of a dominant fraction of the forests occurring in the Amazon basin: old-growth closed-canopy terra firme (non-flooded) forest with trees 30-35 m in height on well drained clay soils. The major science questions guiding the experiment are closely informed by results of past FACE experiment and involve carbon metabolism, water use, nutrient cycling, interactions with environmental stressors, and the relationship between plant functional traits and community composition. FACE experiments can define ecological processes and mechanisms of responses for predictive models of ecosystem response, and models of CO2 response can define critical uncertainties and testable hypotheses for experiments; hence, the Amazon FACE experiment will feature a close integration of modeling and experimental approaches.

Archaeal Community Changes Associated with Cultivation of Amazon Forest Soil with Oil Palm

PubMed Central

Tupinambá, Daiva Domenech; Cantão, Maurício Egídio; Costa, Ohana Yonara Assis; Bergmann, Jessica Carvalho; Kruger, Ricardo Henrique; Kyaw, Cynthia Maria; Barreto, Cristine Chaves; Quirino, Betania Ferraz

2016-01-01

This study compared soil archaeal communities of the Amazon forest with that of an adjacent area under oil palm cultivation by 16S ribosomal RNA gene pyrosequencing. Species richness and diversity were greater in native forest soil than in the oil palm-cultivated area, and 130 OTUs (13.7%) were shared between these areas. Among the classified sequences, Thaumarchaeota were predominant in the native forest, whereas Euryarchaeota were predominant in the oil palm-cultivated area. Archaeal species diversity was 1.7 times higher in the native forest soil, according to the Simpson diversity index, and the Chao1 index showed that richness was five times higher in the native forest soil. A phylogenetic tree of unclassified Thaumarchaeota sequences showed that most of the OTUs belong to Miscellaneous Crenarchaeotic Group. Several archaeal genera involved in nutrient cycling (e.g., methanogens and ammonia oxidizers) were identified in both areas, but significant differences were found in the relative abundances of Candidatus Nitrososphaera and unclassified Soil Crenarchaeotic Group (prevalent in the native forest) and Candidatus Nitrosotalea and unclassified Terrestrial Group (prevalent in the oil palm-cultivated area). More studies are needed to culture some of these Archaea in the laboratory so that their metabolism and physiology can be studied. PMID:27006640

Biomass Change of the Landless Peasants' Settlements in Lower Amazon

NASA Astrophysics Data System (ADS)

Yoshikawa, S.; Ishimaru, K.

2014-12-01

Land use/land cover (LU/LC) changes have been reported to occur over large areas in Legal Amazon due to the introduction of large-scale mechanized agriculture, extensive cattle ranching and uncontrolled slash-and-burn cultivation since the 1980s. Around the same time, movements which poor peoples or landless peasants settle into abandoned land have been very active in Brazil. In many cases, these people lack agricultural experiences to yield sufficient production for livelihoods. Thus, it leads to abandon the land and repeat forest clearance. In recent year, education by NGOs to these people encourage spreading of agroforestry which is a land use management system in which trees are grown around or among crops or pasture land. In this study, we specifically aimed at clarifying changes in LULC and these biomass using ground observation data, remotely-sensed LANDSAT data and GIS techniques. We focus on four different settlements: old-established settlement (around 30 years), established settlement (around 20 years), productive settlement (7 year) and unproductive settlement (7 years). These four settelements were located at Santa Barbará province, about 40 km northeast from the center of Belém, the Pará state capital, in the northern part of Brazil. We clarify that the biomass change varied according to whether the settlement are productive or not.

Multi-scale assessment of human-induced changes to ...

EPA Pesticide Factsheets

Context: Land use change and forest degradation have myriad effects on tropical ecosystems. Yet their consequences for low-order streams remain very poorly understood, including in the world´s largest freshwater basin, the Amazon.Objectives: Determine the degree to which physical and chemical characteristics of the instream habitat of low-order Amazonian streams change in response to past local- and catchment-level anthropogenic disturbances. Methods: To do so, we collected field instream habitat (i.e., physical habitat and water quality) and landscape data from 99 stream sites in two eastern Brazilian Amazon regions. We used random forest regression trees to assess the relative importance of different predictor variables in determining changes in instream habitat response variables. Adaptations the USEPA’s National Aquatic Resource Survey (NARS) designs, field methods, and approaches for assessing ecological condition have been applied in state and basin stream surveys throughout the U.S., and also in countries outside of the U.S. These applications not only provide valuable tests of the NARS approaches, but generate new understandings of natural and anthropogenic controls on biota and physical habitat in streams. Results from applications in Brazil, for example, not only aid interpretation of the condition of Brazilian streams, but also refine approaches for interpreting aquatic resource surveys in the U.S. and elsewhere. In this article, the authors des

Artisanal Extraction and Traditional Knowledge Associated with Medicinal Use of Crabwood Oil (Carapa guianensis Aublet.) in a Peri-Urban Várzea Environment in the Amazon Estuary.

PubMed

Nardi, Mariane; Lira-Guedes, Ana Cláudia; Albuquerque Cunha, Helenilza Ferreira; Guedes, Marcelino Carneiro; Mustin, Karen; Gomes, Suellen Cristina Pantoja

2016-01-01

Várzea forests of the Amazon estuary contain species of importance to riverine communities. For example, the oil extracted from the seeds of crabwood trees is traditionally used to combat various illnesses and as such artisanal extraction processes have been maintained. The objectives of this study were to (1) describe the process involved in artisanal extraction of crabwood oil in the Fazendinha Protected Area, in the state of Amapá; (2) characterise the processes of knowledge transfer associated with the extraction and use of crabwood oil within a peri-urban riverine community; and (3) discern medicinal uses of the oil. The data were obtained using semistructured interviews with 13 community members involved in crabwood oil extraction and via direct observation. The process of oil extraction is divided into four stages: seed collection; cooking and resting of the seeds; shelling of the seeds and dough preparation; and oil collection. Oil extraction is carried out within the home for personal use, with surplus marketed within the community. More than 90% of the members of the community involved in extraction of crabwood oil highlighted the use of the oil to combat inflammation of the throat. Knowledge transfer occurs via oral transmission and through direct observation.

Artisanal Extraction and Traditional Knowledge Associated with Medicinal Use of Crabwood Oil (Carapa guianensis Aublet.) in a Peri-Urban Várzea Environment in the Amazon Estuary

PubMed Central

Lira-Guedes, Ana Cláudia; Albuquerque Cunha, Helenilza Ferreira; Guedes, Marcelino Carneiro; Mustin, Karen; Gomes, Suellen Cristina Pantoja

2016-01-01

Várzea forests of the Amazon estuary contain species of importance to riverine communities. For example, the oil extracted from the seeds of crabwood trees is traditionally used to combat various illnesses and as such artisanal extraction processes have been maintained. The objectives of this study were to (1) describe the process involved in artisanal extraction of crabwood oil in the Fazendinha Protected Area, in the state of Amapá; (2) characterise the processes of knowledge transfer associated with the extraction and use of crabwood oil within a peri-urban riverine community; and (3) discern medicinal uses of the oil. The data were obtained using semistructured interviews with 13 community members involved in crabwood oil extraction and via direct observation. The process of oil extraction is divided into four stages: seed collection; cooking and resting of the seeds; shelling of the seeds and dough preparation; and oil collection. Oil extraction is carried out within the home for personal use, with surplus marketed within the community. More than 90% of the members of the community involved in extraction of crabwood oil highlighted the use of the oil to combat inflammation of the throat. Knowledge transfer occurs via oral transmission and through direct observation. PMID:27478479

Inclusion body disease in snakes: a review and description of three cases in boa constrictors in Belgium.

PubMed

Vancraeynest, D; Pasmans, F; Martel, A; Chiers, K; Meulemans, G; Mast, J; Zwart, P; Ducatelle, R

2006-06-03

Inclusion body disease, a fatal disorder in Boidae, is reviewed, and three cases in boa constrictors, the first reported cases in Belgium, are described. The snakes showed nervous signs, and numerous eosinophilic intracytoplasmic inclusions, which are considered to be characteristic of the disease, were found in the liver and pancreas. The disease is suspected to be caused by a retrovirus, but transmission electron microscopic examinations of several tissues from one of the snakes did not reveal particles with a typical retroviral morphology.

Amazon Forests Response to Droughts: A Perspective from the MAIAC Product

NASA Technical Reports Server (NTRS)

Bi, Jian; Myneni, Ranga; Lyapustin, Alexei; Wang, Yujie; Park, Taejin; Chi, Chen; Yan, Kai; Knyazikhin, Yuri

2016-01-01

Amazon forests experienced two severe droughts at the beginning of the 21st century: one in 2005 and the other in 2010. How Amazon forests responded to these droughts is critical for the future of the Earth's climate system. It is only possible to assess Amazon forests' response to the droughts in large areal extent through satellite remote sensing. Here, we used the Multi-Angle Implementation of Atmospheric Correction (MAIAC) Moderate Resolution Imaging Spectroradiometer (MODIS) vegetation index (VI) data to assess Amazon forests' response to droughts, and compared the results with those from the standard (Collection 5 and Collection 6) MODIS VI data. Overall, the MAIAC data reveal more realistic Amazon forests inter-annual greenness dynamics than the standard MODIS data. Our results from the MAIAC data suggest that: (1) the droughts decreased the greenness (i.e., photosynthetic activity) of Amazon forests; (2) the Amazon wet season precipitation reduction induced by El Niño events could also lead to reduced photosynthetic activity of Amazon forests; and (3) in the subsequent year after the water stresses, the greenness of Amazon forests recovered from the preceding decreases. However, as previous research shows droughts cause Amazon forests to reduce investment in tissue maintenance and defense, it is not clear whether the photosynthesis of Amazon forests will continue to recover after future water stresses, because of the accumulated damages caused by the droughts.

Confluence of the Amazon and Topajos Rivers, Brazil, South America

NASA Image and Video Library

1991-08-11

This view shows the confluence of the Amazon and the Topajos Rivers at Santarem, Brazil (2.0S, 55.0W). The Am,azon flows from lower left to upper right of the photo. Below the river juncture of the Amazon and Tapajos, there is considerable deforestation activity along the Trans-Amazon Highway.

SUPERFAMILY 1.75 including a domain-centric gene ontology method.

PubMed

de Lima Morais, David A; Fang, Hai; Rackham, Owen J L; Wilson, Derek; Pethica, Ralph; Chothia, Cyrus; Gough, Julian

2011-01-01

The SUPERFAMILY resource provides protein domain assignments at the structural classification of protein (SCOP) superfamily level for over 1400 completely sequenced genomes, over 120 metagenomes and other gene collections such as UniProt. All models and assignments are available to browse and download at http://supfam.org. A new hidden Markov model library based on SCOP 1.75 has been created and a previously ignored class of SCOP, coiled coils, is now included. Our scoring component now uses HMMER3, which is in orders of magnitude faster and produces superior results. A cloud-based pipeline was implemented and is publicly available at Amazon web services elastic computer cloud. The SUPERFAMILY reference tree of life has been improved allowing the user to highlight a chosen superfamily, family or domain architecture on the tree of life. The most significant advance in SUPERFAMILY is that now it contains a domain-based gene ontology (GO) at the superfamily and family levels. A new methodology was developed to ensure a high quality GO annotation. The new methodology is general purpose and has been used to produce domain-based phenotypic ontologies in addition to GO.

Identification of snake arenaviruses in live boas and pythons in a zoo in Germany.

PubMed

Aqrawi, T; Stöhr, A C; Knauf-Witzens, T; Krengel, A; Heckers, K O; Marschang, R E

2015-01-01

Recent studies have described the detection and characterisation of new, snake specific arenaviruses in boas and pythons with inclusion body disease (IBD). The objective of this study was to detect arenaviral RNA in live snakes and to determine if these were associated with IBD in all cases. Samples for arenavirus detection in live animals were compared. Detected viruses were compared in order to understand their genetic variability. Esophageal swabs and whole blood was collected from a total of 28 boas and pythons. Samples were tested for arenaviral RNA by RT-PCR. Blood smears from all animals were examined for the presence of inclusion bodies. Internal tissues from animals that died or were euthanized during the study were examined for inclusions and via RT-PCR for arenaviral RNA. All PCR products were sequenced and the genomic sequences phylogenetically analysed. Nine live animals were found to be arenavirus-positive. Two additional snakes tested positive following necropsy. Five new arenaviruses were detected and identified. The detected viruses were named "Boa Arenavirus Deutschland (Boa Av DE) numbers 1-4" and one virus detected in a python (Morelia viridis) was named "Python Av DE1". Results from sequence analyses revealed considerable similarities to a portion of the glycoprotein genes of recently identified boid snake arenaviruses. Both oral swabs and whole blood can be used for the detection of arenaviruses in snakes. In most cases, but not in all, the presence of arenaviral RNA correlated with the presence of inclusions in the tissues of infected animals. There was evidence that some animals may be able to clear arenavirus infection without development of IBD. This is the first detection of arenaviruses in live snakes. The detection of arenaviruses in live snakes is of importance for both disease detection and prevention and for use in quarantine situations. The findings in this study support the theory that arenaviruses are the cause of IBD, but indicate that in some cases it may be possible for animals to clear arenavirus infections without developing IBD.

Integrating Marine Observatories into a System-of-Systems: Messaging in the US Ocean Observatories Initiative

DTIC Science & Technology

2010-06-01

Woods Hole, MA 02543, USA 3 Raytheon Intelligence and Information Systems, Aurora , CO 80011, USA 4 Scripps Institution of Oceanography, La Jolla...Amazon.com, Amazon Web Services for the Amazon Elastic Compute Cloud ( Amazon EC2). http://aws.amazon.com/ec2/. [4] M. Arrott, B. Demchak, V. Ermagan, C

Regional to Global Biogenic Isoprene Emission Responses to Changes in Vegetation From 2000 to 2015

NASA Astrophysics Data System (ADS)

Chen, W. H.; Guenther, A. B.; Wang, X. M.; Chen, Y. H.; Gu, D. S.; Chang, M.; Zhou, S. Z.; Wu, L. L.; Zhang, Y. Q.

2018-04-01

Isoprene, a dominant biogenic volatile organic compound that is mainly emitted by trees, has a significant impact on the atmospheric chemistry. Regional to global changes in biogenic isoprene emission associated with vegetation variations between 2000 and 2015 were estimated using the MEGAN model with satellite land cover data for inputs in this study. The satellite data estimates of land cover changes were compared to results from previous investigators that have either conducted regional studies or have used lower resolution land cover data. The analysis indicates that tree coverage increases of >5% occurred in 13% of locations including in central China and Europe. In contrast, a decrease of >5% was observed in about 5% of locations, especially in tropical regions. The trends in global tree coverage from 2000 to 2015 resulted in a global isoprene emission decrease of only 1.5%, but there were significant regional variations. Obvious decreases in tree coverage in some tropical areas (e.g., Amazon Basin, Western Africa, Southeast Asia) resulted in a 10% reduction of regional isoprene emission due to agricultural expansion. Distinct increments of isoprene emission (5-10%) were mainly found in Northeast China and India and were associated with afforestation efforts. Deforestation and afforestation associated with managed plantations does not only affect the total forest coverage but also impacts average isoprene emission capacity, which can result in accelerated isoprene emission variations. Consequently, isoprene variation assessments are needed that not only account for changes in vegetation fractions but also consider the changes in plant species compositions of forests and other landscapes.

Improved paramagnetic chelate for molecular imaging with MRI

NASA Astrophysics Data System (ADS)

Winter, Patrick; Athey, Phillip; Kiefer, Garry; Gulyas, Gyongyi; Frank, Keith; Fuhrhop, Ralph; Robertson, David; Wickline, Samuel; Lanza, Gregory

2005-05-01

The relaxivity and transmetallation of two lipophilic paramagnetic chelates incorporated onto perfluorocarbon nanoparticles, i.e., gadolinium-methoxy-tetraazacyclododecane-tetraacetic acid phosphatidylethanolamine (Gd-MeO-DOTA-PE) and gadolinium-methoxy-tetraazacyclododecane-tetraacetic acid triglycine phosphatidylethanolamine (Gd-MeO-DOTA-triglycine-PE (Gd-MeO-DOTA-triglycine-PE)), were compared to a prototypic gadolinium-diethylene-triamine-pentaacetic acid bis-oleate (Gd-DTPA-BOA) paramagnetic formulation. Nanoparticles with MeO-DOTA-based chelates demonstrated higher relaxivity (40% higher for Gd-MeO-DOTA-PE and 55% higher for Gd-MeO-DOTA-triglycine-PE) and less transmetallation than the original Gd-DTPA-BOA-based agent.

Forested wetland habitat

USGS Publications Warehouse

Duberstein, Jamie A.; Krauss, Ken W.; Kennish, Michael J.

2015-01-01

A forested wetland (swamp) is a forest where soils are saturated or flooded for at least a portion of the growing season, and vegetation, dominated by trees, is adapted to tolerate flooded conditions. A tidal freshwater forested wetland is a forested wetland that experiences frequent but short-term surface flooding via tidal action, with average salinity of soil porewater less than 0.5 g/l. It is known locally as tidal várzea in the Amazon delta, Brazil. A tidal saltwater forested wetland (mangrove forest) is a forested wetland that experiences frequent but short-term surface flooding via tidal action, with average salinity often exceeding 3 g/l and reaching levels that can exceed seawater. Mangrove ecosystems are composed of facultative halophytes that generally experience better growth at moderate salinity concentrations.

Plasticity in leaf-level water relations of tropical rainforest trees in response to experimental drought.

PubMed

Binks, Oliver; Meir, Patrick; Rowland, Lucy; da Costa, Antonio Carlos Lola; Vasconcelos, Steel Silva; de Oliveira, Alex Antonio Ribeiro; Ferreira, Leandro; Christoffersen, Bradley; Nardini, Andrea; Mencuccini, Maurizio

2016-07-01

The tropics are predicted to become warmer and drier, and understanding the sensitivity of tree species to drought is important for characterizing the risk to forests of climate change. This study makes use of a long-term drought experiment in the Amazon rainforest to evaluate the role of leaf-level water relations, leaf anatomy and their plasticity in response to drought in six tree genera. The variables (osmotic potential at full turgor, turgor loss point, capacitance, elastic modulus, relative water content and saturated water content) were compared between seasons and between plots (control and through-fall exclusion) enabling a comparison between short- and long-term plasticity in traits. Leaf anatomical traits were correlated with water relation parameters to determine whether water relations differed among tissues. The key findings were: osmotic adjustment occurred in response to the long-term drought treatment; species resistant to drought stress showed less osmotic adjustment than drought-sensitive species; and water relation traits were correlated with tissue properties, especially the thickness of the abaxial epidermis and the spongy mesophyll. These findings demonstrate that cell-level water relation traits can acclimate to long-term water stress, and highlight the limitations of extrapolating the results of short-term studies to temporal scales associated with climate change. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Metagenome sequencing of the microbial community of two Brazilian anthropogenic Amazon dark earth sites, Brazil.

PubMed

Lemos, Leandro Nascimento; de Souza, Rosineide Cardoso; de Souza Cannavan, Fabiana; Patricio, André; Pylro, Victor Satler; Hanada, Rogério Eiji; Mui, Tsai Siu

2016-12-01

The Anthropogenic Amazon Dark Earth soil is considered one of the world's most fertile soils. These soils differs from conventional Amazon soils because its higher organic content concentration. Here we describe the metagenome sequencing of microbial communities of two sites of Anthropogenic Amazon Dark Earth soils from Amazon Rainforest, Brazil. The raw sequence data are stored under Short Read Accession number: PRJNA344917.

Estimating Amazonian rainforest stability and the likelihood for large-scale forest dieback

NASA Astrophysics Data System (ADS)

Rammig, Anja; Thonicke, Kirsten; Jupp, Tim; Ostberg, Sebastian; Heinke, Jens; Lucht, Wolfgang; Cramer, Wolfgang; Cox, Peter

2010-05-01

Annually, tropical forests process approximately 18 Pg of carbon through respiration and photosynthesis - more than twice the rate of anthropogenic fossil fuel emissions. Current climate change may be transforming this carbon sink into a carbon source by changing forest structure and dynamics. Increasing temperatures and potentially decreasing precipitation and thus prolonged drought stress may lead to increasing physiological stress and reduced productivity for trees. Resulting decreases in evapotranspiration and therefore convective precipitation could further accelerate drought conditions and destabilize the tropical ecosystem as a whole and lead to an 'Amazon forest dieback'. The projected direction and intensity of climate change vary widely within the region and between different scenarios from climate models (GCMs). In the scope of a World Bank-funded study, we assessed the 24 General Circulation Models (GCMs) evaluated in the 4th Assessment Report of the Intergovernmental Panel on Climate Change (IPCC-AR4) with respect to their capability to reproduce present-day climate in the Amazon basin using a Bayesian approach. With this approach, greater weight is assigned to the models that simulate well the annual cycle of rainfall. We then use the resulting weightings to create probability density functions (PDFs) for future forest biomass changes as simulated by the Lund-Potsdam-Jena Dynamic Global Vegetation Model (LPJmL) to estimate the risk of potential Amazon rainforest dieback. Our results show contrasting changes in forest biomass throughout five regions of northern South America: If photosynthetic capacity and water use efficiency is enhanced by CO2, biomass increases across all five regions. However, if CO2-fertilisation is assumed to be absent or less important, then substantial dieback occurs in some scenarios and thus, the risk of forest dieback is considerably higher. Particularly affected are regions in the central Amazon basin. The range of potential biomass change arising from the weighting of rainfall patterns is smaller than the uncertainty arising from CO2-fertilisation effects, which highlights the importance of reducing the uncertainties in the direct effects of CO2 on tropical ecosystems. Strong biomass changes also imply changes in forest structure and thus, forest stability. Our results display shifts in forest composition from closed rainforest to more open forest or even shrubland. Our probability-based risk analysis could be used to advise regional forest protection.

A detailed examination of laser-ion acceleration mechanisms in the relativistic transparency regime using tracers

NASA Astrophysics Data System (ADS)

Stark, David J.; Yin, Lin; Albright, Brian J.; Nystrom, William; Bird, Robert

2018-04-01

We present a particle-in-cell study of linearly polarized laser-ion acceleration systems, in which we use both two-dimensional (2D) and three-dimensional (3D) simulations to characterize the ion acceleration mechanisms in targets which become transparent to the laser pulse during irradiation. First, we perform a target length scan to optimize the peak ion energies in both 2D and 3D, and the predictive capabilities of 2D simulations are discussed. Tracer analysis allows us to isolate the acceleration into stages of target normal sheath acceleration (TNSA), hole boring (HB), and break-out afterburner (BOA) acceleration, which vary in effectiveness based on the simulation parameters. The thinnest targets reveal that enhanced TNSA is responsible for accelerating the most energetic ions, whereas the thickest targets have ions undergoing successive phases of HB and TNSA (in 2D) or BOA and TNSA (in 3D); HB is not observed to be a dominant acceleration mechanism in the 3D simulations. It is in the intermediate optimal regime, both when the laser breaks through the target with appreciable amplitude and when there is enough plasma to form a sustained high density flow, that BOA is most effective and is responsible for the most energetic ions. Eliminating the transverse laser spot size effects by performing a plane wave simulation, we can isolate with greater confidence the underlying physics behind the ion dynamics we observe. Specifically, supplemented by wavelet and FFT analyses, we match the post-transparency BOA acceleration with a wave-particle resonance with a high-amplitude low-frequency electrostatic wave of increasing phase velocity, consistent with that predicted by the Buneman instability.

Is Telomere Length a Biomarker for Aging: Cross-Sectional Evidence from the West of Scotland?

PubMed Central

Der, Geoff; Batty, G. David; Benzeval, Michaela; Deary, Ian J.; Green, Michael J.; McGlynn, Liane; McIntyre, Alan; Robertson, Tony; Shiels, Paul G.

2012-01-01

Background The search for biomarkers of aging (BoAs) has been largely unsuccessful to-date and there is widespread skepticism about the prospects of finding any that satisfy the criteria developed by the American Federation of Aging Research. This may be because the criteria are too strict or because a composite measure might be more appropriate. Telomere length has attracted a great deal of attention as a candidate BoA. We investigate whether it meets the criteria to be considered as a single biomarker of aging, and whether it makes a useful contribution to a composite measure. Methodology/Principal Findings Using data from a large population based study, we show that telomere length is associated with age, with several measures of physical and cognitive functioning that are related to normal aging, and with three measures of overall health. In the majority of cases, telomere length adds predictive power to that of age, although it was not nearly as good a predictor overall. We used principal components analysis to form two composites from the measures of functioning, one including telomere length and the other not including it. These composite BoAs were better predictors of the health outcomes than chronological age. There was little difference between the two composites. Conclusions Telomere length does not satisfy the strict criteria for a BoA, but does add predictive power to that of chronological age. Equivocal results from previous studies might be due to lack of power or the choice of measures examined together with a focus on single biomarkers. Composite biomarkers of aging have the potential to outperform age and should be considered for future research in this area. PMID:23028820

Is telomere length a biomarker for aging: cross-sectional evidence from the west of Scotland?

PubMed

Der, Geoff; Batty, G David; Benzeval, Michaela; Deary, Ian J; Green, Michael J; McGlynn, Liane; McIntyre, Alan; Robertson, Tony; Shiels, Paul G

2012-01-01

The search for biomarkers of aging (BoAs) has been largely unsuccessful to-date and there is widespread skepticism about the prospects of finding any that satisfy the criteria developed by the American Federation of Aging Research. This may be because the criteria are too strict or because a composite measure might be more appropriate. Telomere length has attracted a great deal of attention as a candidate BoA. We investigate whether it meets the criteria to be considered as a single biomarker of aging, and whether it makes a useful contribution to a composite measure. Using data from a large population based study, we show that telomere length is associated with age, with several measures of physical and cognitive functioning that are related to normal aging, and with three measures of overall health. In the majority of cases, telomere length adds predictive power to that of age, although it was not nearly as good a predictor overall. We used principal components analysis to form two composites from the measures of functioning, one including telomere length and the other not including it. These composite BoAs were better predictors of the health outcomes than chronological age. There was little difference between the two composites. Telomere length does not satisfy the strict criteria for a BoA, but does add predictive power to that of chronological age. Equivocal results from previous studies might be due to lack of power or the choice of measures examined together with a focus on single biomarkers. Composite biomarkers of aging have the potential to outperform age and should be considered for future research in this area.

Multi-model analysis of the Atlantic influence on Southern Amazon rainfall

DOE PAGES

Yoon, Jin -Ho

2015-12-07

Amazon rainfall is subject to year-to-year fluctuation resulting in drought and flood in various intensities. A major climatic driver of the interannual variation of the Amazon rainfall is El Niño/Southern Oscillation. Also, the Sea Surface Temperature over the Atlantic Ocean is identified as an important climatic driver on the Amazon water cycle. Previously, observational datasets were used to support the Atlantic influence on Amazon rainfall. Furthermore, it is found that multiple global climate models do reproduce the Atlantic-Amazon link robustly. However, there exist differences in rainfall response, which primarily depends on the climatological rainfall amount.

Brazil-U.S. Relations

DTIC Science & Technology

2009-06-03

the Amazon falls within Brazilian borders, making Brazil home to 40% of the world’s remaining tropical forests.96 The Brazilian Amazon was largely...20 Amazon Conservation......................................................................................................... 20 Domestic Efforts...independence in 1822, Brazil occupies almost half of the continent of South America and boasts immense biodiversity, including the vast Amazon

[Soil and forest structure in the Colombian Amazon].

PubMed

Calle-Rendón, Bayron R; Moreno, Flavio; Cárdenas López, Dairon

2011-09-01

Forests structural differences could result of environmental variations at different scales. Because soils are an important component of plant's environment, it is possible that edaphic and structural variables are associated and that, in consequence, spatial autocorrelation occurs. This paper aims to answer two questions: (1) are structural and edaphic variables associated at local scale in a terra firme forest of Colombian Amazonia? and (2) are these variables regionalized at the scale of work? To answer these questions we analyzed the data of a 6ha plot established in a terra firme forest of the Amacayacu National Park. Structural variables included basal area and density of large trees (diameter > or = 10cm) (Gdos and Ndos), basal area and density of understory individuals (diameter < 10cm) (Gsot and Nsot) and number of species of large trees (sp). Edaphic variables included were pH, organic matter, P, Mg, Ca, K, Al, sand, silt and clay. Structural and edaphic variables were reduced through a principal component analysis (PCA); then, the association between edaphic and structural components from PCA was evaluated by multiple regressions. The existence of regionalization of these variables was studied through isotropic variograms, and autocorrelated variables were spatially mapped. PCA found two significant components for structure, corresponding to the structure of large trees (G, Gdos, Ndos and sp) and of small trees (N, Nsot and Gsot), which explained 43.9% and 36.2% of total variance, respectively. Four components were identified for edaphic variables, which globally explained 81.9% of total variance and basically represent drainage and soil fertility. Regression analyses were significant (p < 0.05) and showed that the structure of both large and small trees is associated with greater sand contents and low soil fertility, though they explained a low proportion of total variability (R2 was 4.9% and 16.5% for the structure of large trees and small tress, respectively). Variables with spatial autocorrelation were the structure of small trees, Al, silt, and sand. Among them, Nsot and sand content showed similar patterns of spatial distribution inside the plot.

Business as Usual: Amazon.com and the Academic Library

ERIC Educational Resources Information Center

Van Ullen, Mary K.; Germain, Carol Anne

2002-01-01

In 1999, Steve Coffman proposed that libraries form a single interlibrary loan based entity patterned after Amazon.com. This study examined the suitability of Amazon.com's Web interface and record enhancements for academic libraries. Amazon.com could not deliver circulating monographs in the University at Albany Libraries' collection quickly…

Global conservation significance of Ecuador's Yasuní National Park.

PubMed

Bass, Margot S; Finer, Matt; Jenkins, Clinton N; Kreft, Holger; Cisneros-Heredia, Diego F; McCracken, Shawn F; Pitman, Nigel C A; English, Peter H; Swing, Kelly; Villa, Gorky; Di Fiore, Anthony; Voigt, Christian C; Kunz, Thomas H

2010-01-19

The threats facing Ecuador's Yasuní National Park are emblematic of those confronting the greater western Amazon, one of the world's last high-biodiversity wilderness areas. Notably, the country's second largest untapped oil reserves--called "ITT"--lie beneath an intact, remote section of the park. The conservation significance of Yasuní may weigh heavily in upcoming state-level and international decisions, including whether to develop the oil or invest in alternatives. We conducted the first comprehensive synthesis of biodiversity data for Yasuní. Mapping amphibian, bird, mammal, and plant distributions, we found eastern Ecuador and northern Peru to be the only regions in South America where species richness centers for all four taxonomic groups overlap. This quadruple richness center has only one viable strict protected area (IUCN levels I-IV): Yasuní. The park covers just 14% of the quadruple richness center's area, whereas active or proposed oil concessions cover 79%. Using field inventory data, we compared Yasuní's local (alpha) and landscape (gamma) diversity to other sites, in the western Amazon and globally. These analyses further suggest that Yasuní is among the most biodiverse places on Earth, with apparent world richness records for amphibians, reptiles, bats, and trees. Yasuní also protects a considerable number of threatened species and regional endemics. Yasuní has outstanding global conservation significance due to its extraordinary biodiversity and potential to sustain this biodiversity in the long term because of its 1) large size and wilderness character, 2) intact large-vertebrate assemblage, 3) IUCN level-II protection status in a region lacking other strict protected areas, and 4) likelihood of maintaining wet, rainforest conditions while anticipated climate change-induced drought intensifies in the eastern Amazon. However, further oil development in Yasuní jeopardizes its conservation values. These findings form the scientific basis for policy recommendations, including stopping any new oil activities and road construction in Yasuní and creating areas off-limits to large-scale development in adjacent northern Peru.

Methanol and isoprene emissions from the fast growing tropical pioneer species Vismia guianensis (Aubl.) Pers. (Hypericaceae) in the central Amazon forest

DOE PAGES

Jardine, Kolby J.; Jardine, Angela B.; Souza, Vinicius F.; ...

2016-05-26

Isoprene (Is) emissions by plants represent a loss of carbon and energy resources leading to the initial hypothesis that fast growing pioneer species in secondary tropical forests allocate carbon primarily to growth at the expense of isoprenoid defenses. In this study, we quantified leaf isoprene and methanol emissions from the abundant pantropical pioneer tree species Vismia guianensis and ambient isoprene concentrations above a diverse secondary forest in the central Amazon. As photosynthetically active radiation (PAR) was varied (0 to 3000 µmol m -2 s -1) under standard leaf temperature (30 °C), isoprene emissions from V. guianensis increased without saturation upmore » to 80 nmol m -2 s -1. A nonlinear increase in isoprene emissions with respect to net photosynthesis (Pn) resulted in the fraction of Pn dedicated to isoprene emissions increasing with light intensity (up to 2 % of Pn). Emission responses to temperature under standard light conditions (PAR of 1000 µmol m -2 s -1) resulted in the classic uncoupling of isoprene emissions ( T opt, iso > 40 °C) from net photosynthesis ( T opt, Pn = 30.0–32.5 °C) with up to 7 % of Pn emitted as isoprene at 40 °C. Under standard environmental conditions of PAR and leaf temperature, young V. guianensis leaves showed high methanol emissions, low Pn, and low isoprene emissions. In contrast, mature leaves showed high Pn, high isoprene emissions, and low methanol emissions, highlighting the differential control of leaf phenology over methanol and isoprene emissions. High daytime ambient isoprene concentrations (11 ppbv) were observed above a secondary Amazon rainforest, suggesting that isoprene emissions are common among neotropical pioneer species. The results are not consistent with the initial hypothesis and support a functional role of methanol during leaf expansion and the establishment of photosynthetic machinery and a protective role of isoprene for photosynthesis during high temperature extremes regularly experienced in secondary rainforest ecosystems.« less

In vitro and in vivo antimalarial potential of oleoresin obtained from Copaifera reticulata Ducke (Fabaceae) in the Brazilian Amazon rainforest.

PubMed

de Souza, Giovana A G; da Silva, Nazaré C; de Souza, Juarez; de Oliveira, Karen R M; da Fonseca, Amanda L; Baratto, Leopoldo C; de Oliveira, Elaine C P; Varotti, Fernando de Pilla; Moraes, Waldiney P

2017-01-15

In view of the wide variety of the flora of the Amazon region, many plants have been studied in the search for new antimalarial agents. Copaifera reticulata is a tree distributed throughout the Amazon region which contains an oleoresin rich in sesquiterpenes and diterpenes with β-caryophyllene as the major compound. The oleoresin has demonstrated antiparasitic activity against Leishmania amazonensis. Because of this previously reported activity, this oleoresin would be expected to also have antimalarial activity. In this study we evaluated the in vitro and in vivo antimalarial potential of C. reticulata oleoresin. In vitro assays were done using P. falciparum W2 and 3D7 strains and the human fibroblast cell line 26VA Wi-4. For in vivo analysis, BALB/c mice were infected with approximately 10 6 erythrocytes parasitized by P. berghei and their parasitemia levels were observed over 7 days of treatment with C. reticulata; hematological and biochemical parameters were analyzed at the end of experiment. The oleoresin of C. reticulata containing the sesquiterpenes β-caryophyllene (41.7%) and β-bisabolene (18.6%) was active against the P. falciparum W2 and 3D7 strains (IC 50  = 1.66 and 2.54 µg/ml, respectively) and showed low cytotoxicity against the 26VA Wi-4 cell line (IC 50  > 100 µg/ml). The C. reticulata oleoresin reduced the parasitemia levels of infected animals and doses of 200 and 100 mg/kg/day reached a rate of parasitemia elimination resembling that obtained with artemisinin 100 mg/kg/day. In addition, treatment with oleoresin improved the hypoglycemic, hematologic, hepatic and renal parameters of the infected animals. The oleoresin of C. reticulata has antimalarial properties and future investigations are necessary to elucidate its mechanism of action. Copyright © 2016 Elsevier GmbH. All rights reserved.

Methanol and isoprene emissions from the fast growing tropical pioneer species Vismia guianensis (Aubl.) Pers. (Hypericaceae) in the central Amazon forest

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jardine, Kolby J.; Jardine, Angela B.; Souza, Vinicius F.

Isoprene (Is) emissions by plants represent a loss of carbon and energy resources leading to the initial hypothesis that fast growing pioneer species in secondary tropical forests allocate carbon primarily to growth at the expense of isoprenoid defenses. In this study, we quantified leaf isoprene and methanol emissions from the abundant pantropical pioneer tree species Vismia guianensis and ambient isoprene concentrations above a diverse secondary forest in the central Amazon. As photosynthetically active radiation (PAR) was varied (0 to 3000 µmol m -2 s -1) under standard leaf temperature (30 °C), isoprene emissions from V. guianensis increased without saturation upmore » to 80 nmol m -2 s -1. A nonlinear increase in isoprene emissions with respect to net photosynthesis (Pn) resulted in the fraction of Pn dedicated to isoprene emissions increasing with light intensity (up to 2 % of Pn). Emission responses to temperature under standard light conditions (PAR of 1000 µmol m -2 s -1) resulted in the classic uncoupling of isoprene emissions ( T opt, iso > 40 °C) from net photosynthesis ( T opt, Pn = 30.0–32.5 °C) with up to 7 % of Pn emitted as isoprene at 40 °C. Under standard environmental conditions of PAR and leaf temperature, young V. guianensis leaves showed high methanol emissions, low Pn, and low isoprene emissions. In contrast, mature leaves showed high Pn, high isoprene emissions, and low methanol emissions, highlighting the differential control of leaf phenology over methanol and isoprene emissions. High daytime ambient isoprene concentrations (11 ppbv) were observed above a secondary Amazon rainforest, suggesting that isoprene emissions are common among neotropical pioneer species. The results are not consistent with the initial hypothesis and support a functional role of methanol during leaf expansion and the establishment of photosynthetic machinery and a protective role of isoprene for photosynthesis during high temperature extremes regularly experienced in secondary rainforest ecosystems.« less

Impact of a drier Early-Mid-Holocene climate upon Amazonian forests.

PubMed

Mayle, Francis E; Power, Mitchell J

2008-05-27

This paper uses a palaeoecological approach to examine the impact of drier climatic conditions of the Early-Mid-Holocene (ca 8000-4000 years ago) upon Amazonia's forests and their fire regimes. Palaeovegetation (pollen data) and palaeofire (charcoal) records are synthesized from 20 sites within the present tropical forest biome, and the underlying causes of any emergent patterns or changes are explored by reference to independent palaeoclimate data and present-day patterns of precipitation, forest cover and fire activity across Amazonia. During the Early-Mid-Holocene, Andean cloud forest taxa were replaced by lowland tree taxa as the cloud base rose while lowland ecotonal areas, which are presently covered by evergreen rainforest, were instead dominated by savannahs and/or semi-deciduous dry forests. Elsewhere in the Amazon Basin there is considerable spatial and temporal variation in patterns of vegetation disturbance and fire, which probably reflects the complex heterogeneous patterns in precipitation and seasonality across the basin, and the interactions between climate change, drought- and fire susceptibility of the forests, and Palaeo-Indian land use. Our analysis shows that the forest biome in most parts of Amazonia appears to have been remarkably resilient to climatic conditions significantly drier than those of today, despite widespread evidence of forest burning. Only in ecotonal areas is there evidence of biome replacement in the Holocene. From this palaeoecological perspective, we argue against the Amazon forest 'dieback' scenario simulated for the future.

Age-dependent leaf physiology and consequences for crown-scale carbon uptake during the dry season in an Amazon evergreen forest.

PubMed

Albert, Loren P; Wu, Jin; Prohaska, Neill; de Camargo, Plinio Barbosa; Huxman, Travis E; Tribuzy, Edgard S; Ivanov, Valeriy Y; Oliveira, Rafael S; Garcia, Sabrina; Smith, Marielle N; Oliveira Junior, Raimundo Cosme; Restrepo-Coupe, Natalia; da Silva, Rodrigo; Stark, Scott C; Martins, Giordane A; Penha, Deliane V; Saleska, Scott R

2018-03-04

Satellite and tower-based metrics of forest-scale photosynthesis generally increase with dry season progression across central Amazônia, but the underlying mechanisms lack consensus. We conducted demographic surveys of leaf age composition, and measured the age dependence of leaf physiology in broadleaf canopy trees of abundant species at a central eastern Amazon site. Using a novel leaf-to-branch scaling approach, we used these data to independently test the much-debated hypothesis - arising from satellite and tower-based observations - that leaf phenology could explain the forest-scale pattern of dry season photosynthesis. Stomatal conductance and biochemical parameters of photosynthesis were higher for recently mature leaves than for old leaves. Most branches had multiple leaf age categories simultaneously present, and the number of recently mature leaves increased as the dry season progressed because old leaves were exchanged for new leaves. These findings provide the first direct field evidence that branch-scale photosynthetic capacity increases during the dry season, with a magnitude consistent with increases in ecosystem-scale photosynthetic capacity derived from flux towers. Interactions between leaf age-dependent physiology and shifting leaf age-demographic composition are sufficient to explain the dry season photosynthetic capacity pattern at this site, and should be considered in vegetation models of tropical evergreen forests. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

Where have all the flowers gone: deforestation in the Third World

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1981-01-01

The papers in this issue (and in its companion issue) describe tropical forest destruction and analyze implications at several levels. The contributions are representative of the major regions of the tropical moist forests (TMFs) - Amazonia, Africa, and Indo-Malaysia - and reveal a process whose ramifications will affect all parts and components of the biosphere. The authors and titles of the 13 paprs are: Norman Myers, Deforestation in the Tropics: Who Gains, Who Loses; William M. Denevan, Swiddens and Cattle Versus Forest: The Imminent Demise of the Amazon Rain Forest Reexamined; Stephen G. Bunker, Impact of Deforestation on Peasant Communitiesmore » in the Medio Amazonas of Brazil; Susanna B. Hecht, Deforestation in the Amazon Basin: Magnitude, Dynamics and Soil-Resource Effects; K. Twum-Barima, Forests of Ghana - A Diminishing Asset; J. Leroy Deval (English abstract), Man and Development in the Forests of Gabon; J. Leroy Deval, L'Homme et Le Developpement de La Foret du Gabon Dans Le Passe; Faustin Legault (English Translation), Reforestation in the Republic of Gabon; Faustin Legault, Le Reboisement en Republique Gabonaise; Peter S. Ashton, Forest Conditions in the Tropics of Asia and the Far East; Gurmit Singh K.S., Destroying Malaysian Forests; Kuswata Kartawinata, Environmental Consequences of Tree Removal from the Forest in Indonesia; and Robert Goodland, Indonesia's Environmental Progress in Economic Development.« less

Land use/cover classification in the Brazilian Amazon using satellite images.

PubMed

Lu, Dengsheng; Batistella, Mateus; Li, Guiying; Moran, Emilio; Hetrick, Scott; Freitas, Corina da Costa; Dutra, Luciano Vieira; Sant'anna, Sidnei João Siqueira

2012-09-01

Land use/cover classification is one of the most important applications in remote sensing. However, mapping accurate land use/cover spatial distribution is a challenge, particularly in moist tropical regions, due to the complex biophysical environment and limitations of remote sensing data per se. This paper reviews experiments related to land use/cover classification in the Brazilian Amazon for a decade. Through comprehensive analysis of the classification results, it is concluded that spatial information inherent in remote sensing data plays an essential role in improving land use/cover classification. Incorporation of suitable textural images into multispectral bands and use of segmentation-based method are valuable ways to improve land use/cover classification, especially for high spatial resolution images. Data fusion of multi-resolution images within optical sensor data is vital for visual interpretation, but may not improve classification performance. In contrast, integration of optical and radar data did improve classification performance when the proper data fusion method was used. Of the classification algorithms available, the maximum likelihood classifier is still an important method for providing reasonably good accuracy, but nonparametric algorithms, such as classification tree analysis, has the potential to provide better results. However, they often require more time to achieve parametric optimization. Proper use of hierarchical-based methods is fundamental for developing accurate land use/cover classification, mainly from historical remotely sensed data.

Age-dependent leaf physiology and consequences for crown-scale carbon uptake during the dry season in an Amazon evergreen forest

DOE Office of Scientific and Technical Information (OSTI.GOV)

Albert, Loren P.; Wu, Jin; Prohaska, Neill

Satellite and tower-based metrics of forest-scale photosynthesis generally increase with dry season progression across central Amazônia, but the underlying mechanisms lack consensus. We conducted demographic surveys of leaf age composition, and measured age-dependence of leaf physiology in broadleaf canopy trees of abundant species at a central eastern Amazon site. Using a novel leaf-to-branch scaling approach, we used this data to independently test the much-debated hypothesis—arising from satellite and tower-based observations—that leaf phenology could explain the forest-scale pattern of dry season photosynthesis. Stomatal conductance and biochemical parameters of photosynthesis were higher for recently mature leaves than for old leaves. Most branchesmore » had multiple leaf age categories simultaneously present, and the number of recently mature leaves increased as the dry season progressed because old leaves were exchanged for new leaves. These findings provide the first direct field evidence that branch-scale photosynthetic capacity increases during the dry season, with a magnitude consistent with increases in ecosystem-scale photosynthetic capacity derived from flux towers. In conclusion, interaction between leaf age-dependent physiology and shifting leaf age-demographic composition are sufficient to explain the dry season photosynthetic capacity pattern at this site, and should be considered in vegetation models of tropical evergreen forests.« less

Space Radar Image of Manaus, Brazil

NASA Image and Video Library

1999-01-27

These two images were created using data from the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR). On the left is a false-color image of Manaus, Brazil acquired April 12, 1994, onboard space shuttle Endeavour. In the center of this image is the Solimoes River just west of Manaus before it combines with the Rio Negro to form the Amazon River. The scene is around 8 by 8 kilometers (5 by 5 miles) with north toward the top. The radar image was produced in L-band where red areas correspond to high backscatter at HH polarization, while green areas exhibit high backscatter at HV polarization. Blue areas show low backscatter at VV polarization. The image on the right is a classification map showing the extent of flooding beneath the forest canopy. The classification map was developed by SIR-C/X-SAR science team members at the University of California,Santa Barbara. The map uses the L-HH, L-HV, and L-VV images to classify the radar image into six categories: Red flooded forest Green unflooded tropical rain forest Blue open water, Amazon river Yellow unflooded fields, some floating grasses Gray flooded shrubs Black floating and flooded grasses Data like these help scientists evaluate flood damage on a global scale. Floods are highly episodic and much of the area inundated is often tree-covered. http://photojournal.jpl.nasa.gov/catalog/PIA01712

The lipidome, genotoxicity, hematotoxicity and antioxidant properties of andiroba oil from the Brazilian Amazon

PubMed Central

Milhomem-Paixão, Susana Suely Rodrigues; Fascineli, Maria Luiza; Roll, Mariana Matos; Longo, João Paulo Figueiró; Azevedo, Ricardo Bentes; Pieczarka, Julio Cesar; Salgado, Hugo Leonardo Crisóstomo; Santos, Alberdan Silva; Grisolia, Cesar Koppe

2016-01-01

Abstract Andirobeira is an Amazonian tree, the seeds of which produce a commercially valuable oil that is used in folk medicine and in the cosmetic industry. Andiroba oil contains components with anti-inflammatory, cicatrizing and insect-repellant actions. However, virtually nothing is known of the safety of this oil for humans. The aim of this work was therefore to investigate the hematotoxicity, genotoxicity and mutagenicity of andiroba oil using the comet and micronucleus assays, and to assess its antioxidant properties and lipidome as a means of addressing safety issues. For the experiments, andiroba oil was administered by gavage for 14 consecutive days in nulliparous female Swiss mice randomly distributed in four groups: negative control and three doses of oil (500, 1000 and 2000 mg/kg/day). These doses were chosen based on recommendations of the OECD guideline no. 474 (1997). GC/MS was used to investigate the free fatty acid, cholesterol and triterpene content of andiroba oil in a lipidomic analysis. No clinical or behavioral alterations were observed throughout the period of treatment, and exposure to andiroba oil at the doses and conditions used here did not result in hematotoxic, genotoxic or mutagenic effects. Tests in vitro showed that oil sample 3 from southwestern of Brazilian Amazon had a high antioxidant capacity that may protect biological systems from oxidative stress, although this activity remains to be demonstrated in vivo. PMID:27192128

Age-dependent leaf physiology and consequences for crown-scale carbon uptake during the dry season in an Amazon evergreen forest

DOE PAGES

Albert, Loren P.; Wu, Jin; Prohaska, Neill; ...

2018-03-04

Satellite and tower-based metrics of forest-scale photosynthesis generally increase with dry season progression across central Amazônia, but the underlying mechanisms lack consensus. We conducted demographic surveys of leaf age composition, and measured age-dependence of leaf physiology in broadleaf canopy trees of abundant species at a central eastern Amazon site. Using a novel leaf-to-branch scaling approach, we used this data to independently test the much-debated hypothesis—arising from satellite and tower-based observations—that leaf phenology could explain the forest-scale pattern of dry season photosynthesis. Stomatal conductance and biochemical parameters of photosynthesis were higher for recently mature leaves than for old leaves. Most branchesmore » had multiple leaf age categories simultaneously present, and the number of recently mature leaves increased as the dry season progressed because old leaves were exchanged for new leaves. These findings provide the first direct field evidence that branch-scale photosynthetic capacity increases during the dry season, with a magnitude consistent with increases in ecosystem-scale photosynthetic capacity derived from flux towers. In conclusion, interaction between leaf age-dependent physiology and shifting leaf age-demographic composition are sufficient to explain the dry season photosynthetic capacity pattern at this site, and should be considered in vegetation models of tropical evergreen forests.« less

Land use/cover classification in the Brazilian Amazon using satellite images

PubMed Central

Lu, Dengsheng; Batistella, Mateus; Li, Guiying; Moran, Emilio; Hetrick, Scott; Freitas, Corina da Costa; Dutra, Luciano Vieira; Sant’Anna, Sidnei João Siqueira

2013-01-01

Land use/cover classification is one of the most important applications in remote sensing. However, mapping accurate land use/cover spatial distribution is a challenge, particularly in moist tropical regions, due to the complex biophysical environment and limitations of remote sensing data per se. This paper reviews experiments related to land use/cover classification in the Brazilian Amazon for a decade. Through comprehensive analysis of the classification results, it is concluded that spatial information inherent in remote sensing data plays an essential role in improving land use/cover classification. Incorporation of suitable textural images into multispectral bands and use of segmentation-based method are valuable ways to improve land use/cover classification, especially for high spatial resolution images. Data fusion of multi-resolution images within optical sensor data is vital for visual interpretation, but may not improve classification performance. In contrast, integration of optical and radar data did improve classification performance when the proper data fusion method was used. Of the classification algorithms available, the maximum likelihood classifier is still an important method for providing reasonably good accuracy, but nonparametric algorithms, such as classification tree analysis, has the potential to provide better results. However, they often require more time to achieve parametric optimization. Proper use of hierarchical-based methods is fundamental for developing accurate land use/cover classification, mainly from historical remotely sensed data. PMID:24353353

What We Can Learn from Amazon for Clinical Decision Support Systems.

PubMed

Abid, Sidra; Keshavjee, Karim; Karim, Arsalan; Guergachi, Aziz

2017-01-01

Health care continue to lag behind other industries, such as retail and financial services, in the use of decision-support-like tools. Amazon is particularly prolific in the use of advanced predictive and prescriptive analytics to assist its customers to purchase more, while increasing satisfaction, retention, repeat-purchases and loyalty. How can we do the same in health care? In this paper, we explore various elements of the Amazon website and Amazon's data science and big data practices to gather inspiration for re-designing clinical decision support in the health care sector. For each Amazon element we identified, we present one or more clinical applications to help us better understand where Amazon's.

Black carbon radiative forcing at TOA decreased during aging.

PubMed

Wu, Yu; Cheng, Tianhai; Zheng, Lijuan; Chen, Hao

2016-12-05

During aging processing, black carbon (also called soot) particles may tend to be mixed with other aerosols, and highly influence their radiative forcing. In this study, freshly emitted soot particles were simulated as fractal aggregates composed of small spherical primary monomers. After aging in the atmosphere, soot monomers were coated by a thinly layer of sulfate as thinly coated soot particles. These soot particles were entirely embedded into large sulfate particle by further aging, and becoming heavily coated soot particles. In clear-sky conditions, black carbon radiative forcing with different aging states were investigated for the bottom and top of atmosphere (BOA and TOA). The simulations showed that black carbon radiative forcing increased at BOA and decreased at TOA after their aging processes. Thinly and heavily coated states increased up to ~12% and ~35% black carbon radiative forcing at BOA, and black carbon radiative forcing at TOA can reach to ~20% and ~100% smaller for thinly and heavily coated states than those of freshly emitted states, respectively. The effect of aging states of black carbon radiative forcing was varied with surface albedo, aerosol optical depth and solar zenith angles. These findings would be helpful for the assessments of climate change.

Molecular Identification of Cryptosporidium Species from Pet Snakes in Thailand.

PubMed

Yimming, Benjarat; Pattanatanang, Khampee; Sanyathitiseree, Pornchai; Inpankaew, Tawin; Kamyingkird, Ketsarin; Pinyopanuwat, Nongnuch; Chimnoi, Wissanuwat; Phasuk, Jumnongjit

2016-08-01

Cryptosporidium is an important pathogen causing gastrointestinal disease in snakes and is distributed worldwide. The main objectives of this study were to detect and identify Cryptosporidium species in captive snakes from exotic pet shops and snake farms in Thailand. In total, 165 fecal samples were examined from 8 snake species, boa constrictor (Boa constrictor constrictor), corn snake (Elaphe guttata), ball python (Python regius), milk snake (Lampropeltis triangulum), king snake (Lampropeltis getula), rock python (Python sebae), rainbow boa (Epicrates cenchria), and carpet python (Morelia spilota). Cryptosporidium oocysts were examined using the dimethyl sulfoxide (DMSO)-modified acid-fast staining and a molecular method based on nested-PCR, PCR-RFLP analysis, and sequencing amplification of the SSU rRNA gene. DMSO-modified acid-fast staining revealed the presence of Cryptosporidium oocysts in 12 out of 165 (7.3%) samples, whereas PCR produced positive results in 40 (24.2%) samples. Molecular characterization indicated the presence of Cryptosporidium parvum (mouse genotype) as the most common species in 24 samples (60%) from 5 species of snake followed by Cryptosporidium serpentis in 9 samples (22.5%) from 2 species of snake and Cryptosporidium muris in 3 samples (7.5%) from P. regius.

Molecular Identification of Cryptosporidium Species from Pet Snakes in Thailand

PubMed Central

Yimming, Benjarat; Pattanatanang, Khampee; Sanyathitiseree, Pornchai; Inpankaew, Tawin; Kamyingkird, Ketsarin; Pinyopanuwat, Nongnuch; Chimnoi, Wissanuwat; Phasuk, Jumnongjit

2016-01-01

Cryptosporidium is an important pathogen causing gastrointestinal disease in snakes and is distributed worldwide. The main objectives of this study were to detect and identify Cryptosporidium species in captive snakes from exotic pet shops and snake farms in Thailand. In total, 165 fecal samples were examined from 8 snake species, boa constrictor (Boa constrictor constrictor), corn snake (Elaphe guttata), ball python (Python regius), milk snake (Lampropeltis triangulum), king snake (Lampropeltis getula), rock python (Python sebae), rainbow boa (Epicrates cenchria), and carpet python (Morelia spilota). Cryptosporidium oocysts were examined using the dimethyl sulfoxide (DMSO)-modified acid-fast staining and a molecular method based on nested-PCR, PCR-RFLP analysis, and sequencing amplification of the SSU rRNA gene. DMSO-modified acid-fast staining revealed the presence of Cryptosporidium oocysts in 12 out of 165 (7.3%) samples, whereas PCR produced positive results in 40 (24.2%) samples. Molecular characterization indicated the presence of Cryptosporidium parvum (mouse genotype) as the most common species in 24 samples (60%) from 5 species of snake followed by Cryptosporidium serpentis in 9 samples (22.5%) from 2 species of snake and Cryptosporidium muris in 3 samples (7.5%) from P. regius. PMID:27658593

Molecular characterization of an earliest cacao (Theobroma cacao L.) collection from Peruvian Amazon using microsatllite DNA markers

USDA-ARS?s Scientific Manuscript database

Cacao (Theobroma cacao L.) is indigenous to the Amazon region of South America. The Peruvian Amazon harbors a large number of diverse cacao populations. Since the 1930s, several numbers of populations have been collected from the Peruvian Amazon and maintained as ex situ germplasm repositories in ...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yoon, Jin -Ho

Amazon rainfall is subject to year-to-year fluctuation resulting in drought and flood in various intensities. A major climatic driver of the interannual variation of the Amazon rainfall is El Niño/Southern Oscillation. Also, the Sea Surface Temperature over the Atlantic Ocean is identified as an important climatic driver on the Amazon water cycle. Previously, observational datasets were used to support the Atlantic influence on Amazon rainfall. Furthermore, it is found that multiple global climate models do reproduce the Atlantic-Amazon link robustly. However, there exist differences in rainfall response, which primarily depends on the climatological rainfall amount.

Reconstruction of the Amazon Basin effective moisture availability over the past 14,000 years.

PubMed

Maslin, M A; Burns, S J

2000-12-22

Quantifying the moisture history of the Amazon Basin is essential for understanding the cause of rain forest diversity and its potential as a methane source. We reconstructed the Amazon River outflow history for the past 14,000 years to provide a moisture budget for the river drainage basin. The oxygen isotopic composition of planktonic foraminifera recovered from a marine sediment core in a region of Amazon River discharge shows that the Amazon Basin was extremely dry during the Younger Dryas, with the discharge reduced by at least 40% as compared with that of today. After the Younger Dryas, a meltwater-driven discharge event was followed by a steady increase in the Amazon Basin effective moisture throughout the Holocene.

Long-term impacts of selective logging on two Amazonian tree species with contrasting ecological and reproductive characteristics: inferences from Eco-gene model simulations.

PubMed

Vinson, C C; Kanashiro, M; Sebbenn, A M; Williams, T C R; Harris, S A; Boshier, D H

2015-08-01

The impact of logging and subsequent recovery after logging is predicted to vary depending on specific life history traits of the logged species. The Eco-gene simulation model was used to evaluate the long-term impacts of selective logging over 300 years on two contrasting Brazilian Amazon tree species, Dipteryx odorata and Jacaranda copaia. D. odorata (Leguminosae), a slow growing climax tree, occurs at very low densities, whereas J. copaia (Bignoniaceae) is a fast growing pioneer tree that occurs at high densities. Microsatellite multilocus genotypes of the pre-logging populations were used as data inputs for the Eco-gene model and post-logging genetic data was used to verify the output from the simulations. Overall, under current Brazilian forest management regulations, there were neither short nor long-term impacts on J. copaia. By contrast, D. odorata cannot be sustainably logged under current regulations, a sustainable scenario was achieved by increasing the minimum cutting diameter at breast height from 50 to 100 cm over 30-year logging cycles. Genetic parameters were only slightly affected by selective logging, with reductions in the numbers of alleles and single genotypes. In the short term, the loss of alleles seen in J. copaia simulations was the same as in real data, whereas fewer alleles were lost in D. odorata simulations than in the field. The different impacts and periods of recovery for each species support the idea that ecological and genetic information are essential at species, ecological guild or reproductive group levels to help derive sustainable management scenarios for tropical forests.

Understanding the genetic diversity, spatial genetic structure and mating system at the hierarchical levels of fruits and individuals of a continuous Theobroma cacao population from the Brazilian Amazon.

PubMed

Silva, C R S; Albuquerque, P S B; Ervedosa, F R; Mota, J W S; Figueira, A; Sebbenn, A M

2011-06-01

Understanding the mating patterns of populations of tree species is a key component of ex situ genetic conservation. In this study, we analysed the genetic diversity, spatial genetic structure (SGS) and mating system at the hierarchical levels of fruits and individuals as well as pollen dispersal patterns in a continuous population of Theobroma cacao in Pará State, Brazil. A total of 156 individuals in a 0.56 ha plot were mapped and genotyped for nine microsatellite loci. For the mating system analyses, 50 seeds were collected from nine seed trees by sampling five fruits per tree (10 seeds per fruit). Among the 156 individuals, 127 had unique multilocus genotypes, and the remaining were clones. The population was spatially aggregated; it demonstrated a significant SGS up to 15 m that could be attributed primarily to the presence of clones. However, the short seed dispersal distance also contributed to this pattern. Population matings occurred mainly via outcrossing, but selfing was observed in some seed trees, which indicated the presence of individual variation for self-incompatibility. The matings were also correlated, especially within (Ρ(p(m))=0.607) rather than among the fruits (Ρ(p(m))=0.099), which suggested that a small number of pollen donors fertilised each fruit. The paternity analysis suggested a high proportion of pollen migration (61.3%), although within the plot, most of the pollen dispersal encompassed short distances (28 m). The determination of these novel parameters provides the fundamental information required to establish long-term ex situ conservation strategies for this important tropical species.

Long-term impacts of selective logging on two Amazonian tree species with contrasting ecological and reproductive characteristics: inferences from Eco-gene model simulations

PubMed Central

Vinson, C C; Kanashiro, M; Sebbenn, A M; Williams, T CR; Harris, S A; Boshier, D H

2015-01-01

The impact of logging and subsequent recovery after logging is predicted to vary depending on specific life history traits of the logged species. The Eco-gene simulation model was used to evaluate the long-term impacts of selective logging over 300 years on two contrasting Brazilian Amazon tree species, Dipteryx odorata and Jacaranda copaia. D. odorata (Leguminosae), a slow growing climax tree, occurs at very low densities, whereas J. copaia (Bignoniaceae) is a fast growing pioneer tree that occurs at high densities. Microsatellite multilocus genotypes of the pre-logging populations were used as data inputs for the Eco-gene model and post-logging genetic data was used to verify the output from the simulations. Overall, under current Brazilian forest management regulations, there were neither short nor long-term impacts on J. copaia. By contrast, D. odorata cannot be sustainably logged under current regulations, a sustainable scenario was achieved by increasing the minimum cutting diameter at breast height from 50 to 100 cm over 30-year logging cycles. Genetic parameters were only slightly affected by selective logging, with reductions in the numbers of alleles and single genotypes. In the short term, the loss of alleles seen in J. copaia simulations was the same as in real data, whereas fewer alleles were lost in D. odorata simulations than in the field. The different impacts and periods of recovery for each species support the idea that ecological and genetic information are essential at species, ecological guild or reproductive group levels to help derive sustainable management scenarios for tropical forests. PMID:24424164

Understanding the genetic diversity, spatial genetic structure and mating system at the hierarchical levels of fruits and individuals of a continuous Theobroma cacao population from the Brazilian Amazon

PubMed Central

Silva, C R S; Albuquerque, P S B; Ervedosa, F R; Mota, J W S; Figueira, A; Sebbenn, A M

2011-01-01

Understanding the mating patterns of populations of tree species is a key component of ex situ genetic conservation. In this study, we analysed the genetic diversity, spatial genetic structure (SGS) and mating system at the hierarchical levels of fruits and individuals as well as pollen dispersal patterns in a continuous population of Theobroma cacao in Pará State, Brazil. A total of 156 individuals in a 0.56 ha plot were mapped and genotyped for nine microsatellite loci. For the mating system analyses, 50 seeds were collected from nine seed trees by sampling five fruits per tree (10 seeds per fruit). Among the 156 individuals, 127 had unique multilocus genotypes, and the remaining were clones. The population was spatially aggregated; it demonstrated a significant SGS up to 15 m that could be attributed primarily to the presence of clones. However, the short seed dispersal distance also contributed to this pattern. Population matings occurred mainly via outcrossing, but selfing was observed in some seed trees, which indicated the presence of individual variation for self-incompatibility. The matings were also correlated, especially within (r̂p(m)=0.607) rather than among the fruits (r̂p(m)=0.099), which suggested that a small number of pollen donors fertilised each fruit. The paternity analysis suggested a high proportion of pollen migration (61.3%), although within the plot, most of the pollen dispersal encompassed short distances (28 m). The determination of these novel parameters provides the fundamental information required to establish long-term ex situ conservation strategies for this important tropical species. PMID:21139632

[Health and environment in the rubber-tree plantations in the Bolivian Acre (1870-1903): the role of exogenous factors and processes].

PubMed

de Almeida Neto, Domingos José; Heller, Léo

2014-10-01

A peculiar situation marks the conditions of human and environmental health in the first major cycle of rubber production in the Acre region of the Western Amazon, whereby the bulk of the boom (1870-1903) occurred in the territory that at that time still belonged to Bolivia. Based on this historical background, this work seeks to describe and comprehend how these factors and processes, which are exogenous to these two fields of analysis mediated the risks that originated in the environment, gave rise to sickness and death in the population of the "Brazilian" rubber-tree plantations established in Bolivian territory. In this manner, the inter-relations between health and environment linked to historically specific configurations of the physical-natural, socioeconomic, political, and cultural conditions, are examined. The work shows that these extrinsic factors and processes to the productive activities exerted an influence not only on its organizational but also functional aspects, while also resulting in the unhealthy conditions observed in the productive regions. It further highlights the fact that the extant infrastructure of the time was sufficient for extractive production and reproduction.

Coordination of physiological and structural traits in Amazon forest trees

NASA Astrophysics Data System (ADS)

Patiño, S.; Fyllas, N. M.; Baker, T. R.; Paiva, R.; Quesada, C. A.; Santos, A. J. B.; Schwarz, M.; Ter Steege, H.; Phillips, O. L.; Lloyd, J.

2012-02-01

Many plant traits covary in a non-random manner reflecting interdependencies associated with "ecological strategy" dimensions. To understand how plants integrate their structural and physiological investments, data on leaf and leaflet size and the ratio of leaf area to sapwood area (ΦLS) obtained for 1020 individual trees (encompassing 661 species) located in 52 tropical forest plots across the Amazon Basin were incorporated into an analysis utilising existing data on species maximum height (Hmax), seed size, leaf mass per unit area (MA), foliar nutrients and δ13C, and branch xylem density (ρx). Utilising a common principal components approach allowing eigenvalues to vary between two soil fertility dependent species groups, five taxonomically controlled trait dimensions were identified. The first involves primarily cations, foliar carbon and MA and is associated with differences in foliar construction costs. The second relates to some components of the classic "leaf economic spectrum", but with increased individual leaf areas and a higher ΦLS newly identified components for tropical tree species. The third relates primarily to increasing Hmax and hence variations in light acquisition strategy involving greater MA, reductions in ΦLS and less negative δ13C. Although these first three dimensions were more important for species from high fertility sites the final two dimensions were more important for low fertility species and were associated with variations linked to reproductive and shade tolerance strategies. Environmental conditions influenced structural traits with ρx of individual species decreasing with increased soil fertility and higher temperatures. This soil fertility response appears to be synchronised with increases in foliar nutrient concentrations and reductions in foliar [C]. Leaf and leaflet area and ΦLS were less responsive to the environment than ρx. Thus, although genetically determined foliar traits such as those associated with leaf construction costs coordinate independently of structural characteristics such as maximum height, others such as the classical "leaf economic spectrum" covary with structural traits such as leaf size and ΦLS. Coordinated structural and physiological adaptions are also associated with light acquisition/shade tolerance strategies with several traits such as MA and [C] being significant components of more than one ecological strategy dimension. This is argued to be a consequence of a range of different potential underlying causes for any observed variation in such "ambiguous" traits. Environmental effects on structural and physiological characteristics are also coordinated but in a different way to the gamut of linkages associated with genotypic differences.

The Amazon Region; A Vision of Sovereignty

DTIC Science & Technology

1998-04-06

and SPOT remote sensing satellites images, about 90% of the Amazon jungle remains almost untouched9. This 280 million hectares of vegetation hold...increasing energy needs, remain unanswered. Indian rights Has the Indian population been jeopardized by the development of the Amazon Region...or government agency. STRATEGY RESEARCH PROJECT THE AMAZON REGION; A VISION OF SOVEREIGNTY BY LIEUTENANT COLONEL EDUARDO JOSE BARBOSA

Oxygen isotopes in tree rings record variation in precipitation δ18O and amount effects in the south of Mexico

NASA Astrophysics Data System (ADS)

Brienen, Roel J. W.; Hietz, Peter; Wanek, Wolfgang; Gloor, Manuel

2013-12-01

Natural archives of oxygen isotopes in precipitation may be used to study changes in the hydrological cycle in the tropics, but their interpretation is not straightforward. We studied to which degree tree rings of Mimosa acantholoba from southern Mexico record variation in isotopic composition of precipitation and which climatic processes influence oxygen isotopes in tree rings (δ18Otr). Interannual variation in δ18Otr was highly synchronized between trees and closely related to isotopic composition of rain measured at San Salvador, 710 km to the southwest. Correlations with δ13C, growth, or local climate variables (temperature, cloud cover, vapor pressure deficit (VPD)) were relatively low, indicating weak plant physiological influences. Interannual variation in δ18Otr correlated negatively with local rainfall amount and intensity. Correlations with the amount of precipitation extended along a 1000 km long stretch of the Pacific Central American coast, probably as a result of organized storm systems uniformly affecting rainfall in the region and its isotope signal; episodic heavy precipitation events, of which some are related to cyclones, deposit strongly 18O-depleted rain in the region and seem to have affected the δ18Otr signal. Large-scale controls on the isotope signature include variation in sea surface temperatures of tropical north Atlantic and Pacific Ocean. In conclusion, we show that δ18Otr of M. acantholoba can be used as a proxy for source water δ18O and that interannual variation in δ18Oprec is caused by a regional amount effect. This contrasts with δ18O signatures at continental sites where cumulative rainout processes dominate and thus provide a proxy for precipitation integrated over a much larger scale. Our results confirm that processes influencing climate-isotope relations differ between sites located, e.g., in the western Amazon versus coastal Mexico, and that tree ring isotope records can help in disentangling the processes influencing precipitation δ18O.

Oxygen isotopes in tree rings record variation in precipitation δ18O and amount effects in the south of Mexico

PubMed Central

Brienen, Roel J W; Hietz, Peter; Wanek, Wolfgang; Gloor, Manuel

2013-01-01

[1] Natural archives of oxygen isotopes in precipitation may be used to study changes in the hydrological cycle in the tropics, but their interpretation is not straightforward. We studied to which degree tree rings of Mimosa acantholoba from southern Mexico record variation in isotopic composition of precipitation and which climatic processes influence oxygen isotopes in tree rings (δ18Otr). Interannual variation in δ18Otr was highly synchronized between trees and closely related to isotopic composition of rain measured at San Salvador, 710 km to the southwest. Correlations with δ13C, growth, or local climate variables (temperature, cloud cover, vapor pressure deficit (VPD)) were relatively low, indicating weak plant physiological influences. Interannual variation in δ18Otr correlated negatively with local rainfall amount and intensity. Correlations with the amount of precipitation extended along a 1000 km long stretch of the Pacific Central American coast, probably as a result of organized storm systems uniformly affecting rainfall in the region and its isotope signal; episodic heavy precipitation events, of which some are related to cyclones, deposit strongly 18O-depleted rain in the region and seem to have affected the δ18Otr signal. Large-scale controls on the isotope signature include variation in sea surface temperatures of tropical north Atlantic and Pacific Ocean. In conclusion, we show that δ18Otr of M. acantholoba can be used as a proxy for source water δ18O and that interannual variation in δ18Oprec is caused by a regional amount effect. This contrasts with δ18O signatures at continental sites where cumulative rainout processes dominate and thus provide a proxy for precipitation integrated over a much larger scale. Our results confirm that processes influencing climate-isotope relations differ between sites located, e.g., in the western Amazon versus coastal Mexico, and that tree ring isotope records can help in disentangling the processes influencing precipitation δ18O. PMID:26213660

Precipitation variability inferred from the annual growth and isotopic composition of tropical trees

NASA Astrophysics Data System (ADS)

Ballantyne, A. P.; Baker, P. A.; Chambers, J. Q.; Villalba, R.

2005-12-01

Here we demonstrate that annual growth and isotopic ratios in tropical trees are responsive to seasonal and annual precipitation variability. We identify several regions of tropical South America characterized by significant relationships between oxygen isotopic ratios (δ 18O) in precipitation and precipitation amount (r = -0.82). Many of these regions are also sensitive to inter-annual variability in the South American Monsoon modulated by the El Niño Southern Oscillation (ENSO). The effectiveness of δ 18O and annual growth of tropical trees as a precipitation proxy is validated by high-resolution sampling of a Tachigali vermelho tree growing near Manaus, Brazil (3.1° S, 60.0° S). Growth in Tachigali spp. was highly correlated with both precipitation and cellulose δ 18O (r = 0.60) and precipitation amount was significantly correlated with δ 18O at a lag of approximately one month (r = 0.56). We also report a multi-proxy record spanning 180 years from Cedrela odorata growing in the Peruvian Amazon near Puerto Maldonado (12.6° S, 69.2° W) revealing a significant relationship between cellulose and monsoon precipitation over the region (r = -0.33). A 150-year record obtained from Polylepis tarapacana growing at Volcan Granada in Northern Argentina (22.0° S, 66.0° W) is also reported with a significant relationship between local monsoon precipitation and a regionally derived ring width index (r = 0.38). Although no significant relationship was revealed between cellulose δ 18O and precipitation in this taxa at this location, separate radii within the same tree revealed a significantly coherent δ 18O signal (r = 0.38). We compared our proxy chronologies with monsoon precipitation reanalysis data for tropical South America, which revealed key features of the South American Monsoon and their sensitivity to ENSO variability.

Molecular phylogeny and diversification of a widespread Neotropical rainforest bird group: The Buff-throated Woodcreeper complex, Xiphorhynchus guttatus/susurrans (Aves: Dendrocolaptidae).

PubMed

Rocha, Tainá C; Sequeira, Fernando; Aleixo, Alexandre; Rêgo, Péricles S; Sampaio, Iracilda; Schneider, Horacio; Vallinoto, Marcelo

2015-04-01

The genus Xiphorhynchus is a species rich avian group widely distributed in Neotropical forests of Central and South America. Although recent molecular studies have improved our understanding of the spatial patterns of genetic diversity in some species of this genus, most are still poorly known, including their taxonomy. Here, we address the historical diversification and phylogenetic relationships of the X. guttatus/susurrans complex, using data from two mitochondrial (cyt b and ND2) and one nuclear (β-fibint7) genes. Phylogenetic relationships were inferred with both gene trees and a Bayesian-based species tree under a coalescent framework (∗BEAST). With exception of the nuclear β-fibint7 gene that produced an unresolved tree, both mtDNA and the species tree showed a similar topology and were congruent in recovering five main clades with high statistical support. These clades, however, are not fully concordant with traditional delimitation of some X. guttatus subspecies, since X. g. polystictus, X. g. guttatus, and X. g. connectens are not supported as distinct clades. Interestingly, these three taxa are more closely related to the mostly trans-Andean X. susurrans than the other southern and western Amazonian subspecies of X. guttatus, which constitutes a paraphyletic species. Timing estimates based on the species tree indicated that diversification in X. guttatus occurred between the end of the Pliocene and early Pleistocene, likely associated with the formation of the modern Amazon River and its main southern tributaries (Xingu, Tocantins, and Madeira), in addition to climate-induced changes in the distribution of rainforest biomes. Our study supports with an enlarged dataset a previous proposal for recognizing at least three species level taxa in the X. guttatus/susurrans complex: X. susurrans, X. guttatus, and X. guttatoides. Copyright © 2015 Elsevier Inc. All rights reserved.

Self-amplified Amazon forest loss due to vegetation-atmosphere feedbacks.

PubMed

Zemp, Delphine Clara; Schleussner, Carl-Friedrich; Barbosa, Henrique M J; Hirota, Marina; Montade, Vincent; Sampaio, Gilvan; Staal, Arie; Wang-Erlandsson, Lan; Rammig, Anja

2017-03-13

Reduced rainfall increases the risk of forest dieback, while in return forest loss might intensify regional droughts. The consequences of this vegetation-atmosphere feedback for the stability of the Amazon forest are still unclear. Here we show that the risk of self-amplified Amazon forest loss increases nonlinearly with dry-season intensification. We apply a novel complex-network approach, in which Amazon forest patches are linked by observation-based atmospheric water fluxes. Our results suggest that the risk of self-amplified forest loss is reduced with increasing heterogeneity in the response of forest patches to reduced rainfall. Under dry-season Amazonian rainfall reductions, comparable to Last Glacial Maximum conditions, additional forest loss due to self-amplified effects occurs in 10-13% of the Amazon basin. Although our findings do not indicate that the projected rainfall changes for the end of the twenty-first century will lead to complete Amazon dieback, they suggest that frequent extreme drought events have the potential to destabilize large parts of the Amazon forest.

Self-amplified Amazon forest loss due to vegetation-atmosphere feedbacks

NASA Astrophysics Data System (ADS)

Zemp, Delphine Clara; Schleussner, Carl-Friedrich; Barbosa, Henrique M. J.; Hirota, Marina; Montade, Vincent; Sampaio, Gilvan; Staal, Arie; Wang-Erlandsson, Lan; Rammig, Anja

2017-03-01

Reduced rainfall increases the risk of forest dieback, while in return forest loss might intensify regional droughts. The consequences of this vegetation-atmosphere feedback for the stability of the Amazon forest are still unclear. Here we show that the risk of self-amplified Amazon forest loss increases nonlinearly with dry-season intensification. We apply a novel complex-network approach, in which Amazon forest patches are linked by observation-based atmospheric water fluxes. Our results suggest that the risk of self-amplified forest loss is reduced with increasing heterogeneity in the response of forest patches to reduced rainfall. Under dry-season Amazonian rainfall reductions, comparable to Last Glacial Maximum conditions, additional forest loss due to self-amplified effects occurs in 10-13% of the Amazon basin. Although our findings do not indicate that the projected rainfall changes for the end of the twenty-first century will lead to complete Amazon dieback, they suggest that frequent extreme drought events have the potential to destabilize large parts of the Amazon forest.

Fragmentation of Andes-to-Amazon connectivity by hydropower dams

PubMed Central

Anderson, Elizabeth P.; Jenkins, Clinton N.; Heilpern, Sebastian; Maldonado-Ocampo, Javier A.; Carvajal-Vallejos, Fernando M.; Encalada, Andrea C.; Rivadeneira, Juan Francisco; Hidalgo, Max; Cañas, Carlos M.; Ortega, Hernan; Salcedo, Norma; Maldonado, Mabel; Tedesco, Pablo A.

2018-01-01

Andes-to-Amazon river connectivity controls numerous natural and human systems in the greater Amazon. However, it is being rapidly altered by a wave of new hydropower development, the impacts of which have been previously underestimated. We document 142 dams existing or under construction and 160 proposed dams for rivers draining the Andean headwaters of the Amazon. Existing dams have fragmented the tributary networks of six of eight major Andean Amazon river basins. Proposed dams could result in significant losses in river connectivity in river mainstems of five of eight major systems—the Napo, Marañón, Ucayali, Beni, and Mamoré. With a newly reported 671 freshwater fish species inhabiting the Andean headwaters of the Amazon (>500 m), dams threaten previously unrecognized biodiversity, particularly among endemic and migratory species. Because Andean rivers contribute most of the sediment in the mainstem Amazon, losses in river connectivity translate to drastic alteration of river channel and floodplain geomorphology and associated ecosystem services. PMID:29399629

Fragmentation of Andes-to-Amazon connectivity by hydropower dams.

PubMed

Anderson, Elizabeth P; Jenkins, Clinton N; Heilpern, Sebastian; Maldonado-Ocampo, Javier A; Carvajal-Vallejos, Fernando M; Encalada, Andrea C; Rivadeneira, Juan Francisco; Hidalgo, Max; Cañas, Carlos M; Ortega, Hernan; Salcedo, Norma; Maldonado, Mabel; Tedesco, Pablo A

2018-01-01

Andes-to-Amazon river connectivity controls numerous natural and human systems in the greater Amazon. However, it is being rapidly altered by a wave of new hydropower development, the impacts of which have been previously underestimated. We document 142 dams existing or under construction and 160 proposed dams for rivers draining the Andean headwaters of the Amazon. Existing dams have fragmented the tributary networks of six of eight major Andean Amazon river basins. Proposed dams could result in significant losses in river connectivity in river mainstems of five of eight major systems-the Napo, Marañón, Ucayali, Beni, and Mamoré. With a newly reported 671 freshwater fish species inhabiting the Andean headwaters of the Amazon (>500 m), dams threaten previously unrecognized biodiversity, particularly among endemic and migratory species. Because Andean rivers contribute most of the sediment in the mainstem Amazon, losses in river connectivity translate to drastic alteration of river channel and floodplain geomorphology and associated ecosystem services.

Self-amplified Amazon forest loss due to vegetation-atmosphere feedbacks

PubMed Central

Zemp, Delphine Clara; Schleussner, Carl-Friedrich; Barbosa, Henrique M. J.; Hirota, Marina; Montade, Vincent; Sampaio, Gilvan; Staal, Arie; Wang-Erlandsson, Lan; Rammig, Anja

2017-01-01

Reduced rainfall increases the risk of forest dieback, while in return forest loss might intensify regional droughts. The consequences of this vegetation–atmosphere feedback for the stability of the Amazon forest are still unclear. Here we show that the risk of self-amplified Amazon forest loss increases nonlinearly with dry-season intensification. We apply a novel complex-network approach, in which Amazon forest patches are linked by observation-based atmospheric water fluxes. Our results suggest that the risk of self-amplified forest loss is reduced with increasing heterogeneity in the response of forest patches to reduced rainfall. Under dry-season Amazonian rainfall reductions, comparable to Last Glacial Maximum conditions, additional forest loss due to self-amplified effects occurs in 10–13% of the Amazon basin. Although our findings do not indicate that the projected rainfall changes for the end of the twenty-first century will lead to complete Amazon dieback, they suggest that frequent extreme drought events have the potential to destabilize large parts of the Amazon forest. PMID:28287104

N2-fixing legumes are linked to enhanced mineral dissolution and microbiome modulations in Neotropical rainforests

NASA Astrophysics Data System (ADS)

Epihov, Dimitar; Batterman, Sarah; Hedin, Lars; Saltonstall, Kristin; Hall, Jefferson; Leake, Jonathan; Beerling, David

2017-04-01

Legumes represent the dominant family of many tropical forests with estimates of 120 billion legume trees in the Amazon basin alone. Many rainforest legume trees form symbioses with N2-fixing bacteria. In the process of atmospheric N2-fixation large amounts of nitrogen-rich litter are generated, supplying half of all nitrogen required to support secondary rainforest succession. However, it is unclear how N2-fixers affect the biogeochemical cycling of other essential nutrients by affecting the rates of mineral dissolution and rock weathering. Here we show that N2-fixing legumes in young Panamanian rainforests promote acidification and enhance silicate rock weathering by a factor of 2 compared to non-fixing trees. We report that N2-fixers also associate with enhanced dissolution of Al- and Fe-bearing secondary minerals native to tropical oxisols. In legume-rich neighbourhoods, non-fixers benefited from raised weathering rates relative to those of legume-free zones thus suggesting a positive community effect driven by N2-fixers. These changes in weathering potential were tracked by parallel functional and structural changes in the soil and rock microbiomes. Our findings support the view that N2-fixing legumes are central components of biogeochemical cycling, associated with enhanced release of Fe- and Al-bound P and primary mineral products (Mg, Mo). Rainforest legume services therefore bear important implications to short-term C cycling related to forest growth and the long-term C cycle related to marine carbonate deposition fuelled by silicate weathering.

Origin and processing of terrestrial organic carbon in the Amazon system: lignin phenols in river, shelf, and fan sediments

NASA Astrophysics Data System (ADS)

Sun, Shuwen; Schefuß, Enno; Mulitza, Stefan; Chiessi, Cristiano M.; Sawakuchi, André O.; Zabel, Matthias; Baker, Paul A.; Hefter, Jens; Mollenhauer, Gesine

2017-05-01

The Amazon River transports large amounts of terrestrial organic carbon (OCterr) from the Andean and Amazon neotropical forests to the Atlantic Ocean. In order to compare the biogeochemical characteristics of OCterr in the fluvial sediments from the Amazon drainage basin and in the adjacent marine sediments, we analysed riverbed sediments from the Amazon mainstream and its main tributaries as well as marine surface sediments from the Amazon shelf and fan for total organic carbon (TOC) content, organic carbon isotopic composition (δ13CTOC), and lignin phenol compositions. TOC and lignin content exhibit positive correlations with Al / Si ratios (indicative of the sediment grain size) implying that the grain size of sediment discharged by the Amazon River plays an important role in the preservation of TOC and leads to preferential preservation of lignin phenols in fine particles. Depleted δ13CTOC values (-26.1 to -29.9 ‰) in the main tributaries consistently correspond with the dominance of C3 vegetation. Ratios of syringyl to vanillyl (S / V) and cinnamyl to vanillyl (C / V) lignin phenols suggest that non-woody angiosperm tissues are the dominant source of lignin in the Amazon basin. Although the Amazon basin hosts a rich diversity of vascular plant types, distinct regional lignin compositions are not observed. In the marine sediments, the distribution of δ13CTOC and Λ8 (sum of eight lignin phenols in organic carbon (OC), expressed as mg/100 mg OC) values implies that OCterr discharged by the Amazon River is transported north-westward by the North Brazil Current and mostly deposited on the inner shelf. The lignin compositions in offshore sediments under the influence of the Amazon plume are consistent with the riverbed samples suggesting that processing of OCterr during offshore transport does not change the encoded source information. Therefore, the lignin compositions preserved in these offshore sediments can reliably reflect the vegetation in the Amazon River catchment. In sediments from the Amazon fan, low lignin content, relatively depleted δ13CTOC values and high (Ad / Al)V ratios indicating highly degraded lignin imply that a significant fraction of the deposited OCterr is derived from petrogenic (sourced from ancient rocks) sources.

Socio-ecological costs of Amazon nut and timber production at community household forests in the Bolivian Amazon.

PubMed

Soriano, Marlene; Mohren, Frits; Ascarrunz, Nataly; Dressler, Wolfram; Peña-Claros, Marielos

2017-01-01

The Bolivian Amazon holds a complex configuration of people and forested landscapes in which communities hold secure tenure rights over a rich ecosystem offering a range of livelihood income opportunities. A large share of this income is derived from Amazon nut (Bertholletia excelsa). Many communities also have long-standing experience with community timber management plans. However, livelihood needs and desires for better living conditions may continue to place these resources under considerable stress as income needs and opportunities intensify and diversify. We aim to identify the socioeconomic and biophysical factors determining the income from forests, husbandry, off-farm and two keystone forest products (i.e., Amazon nut and timber) in the Bolivian Amazon region. We used structural equation modelling tools to account for the complex inter-relationships between socioeconomic and biophysical factors in predicting each source of income. The potential exists to increase incomes from existing livelihood activities in ways that reduce dependency upon forest resources. For example, changes in off-farm income sources can act to increase or decrease forest incomes. Market accessibility, social, financial, and natural and physical assets determined the amount of income community households could derive from Amazon nut and timber. Factors related to community households' local ecological knowledge, such as the number of non-timber forest products harvested and the number of management practices applied to enhance Amazon nut production, defined the amount of income these households could derive from Amazon nut and timber, respectively. The (inter) relationships found among socioeconomic and biophysical factors over income shed light on ways to improve forest-dependent livelihoods in the Bolivian Amazon. We believe that our analysis could be applicable to other contexts throughout the tropics as well.

Impact of the biomass burning on methane variability during dry years in the Amazon measured from an aircraft and the AIRS sensor.

PubMed

Ribeiro, Igor Oliveira; Andreoli, Rita Valéria; Kayano, Mary Toshie; de Sousa, Thaiane Rodrigues; Medeiros, Adan Sady; Guimarães, Patrícia Costa; Barbosa, Cybelli G G; Godoi, Ricardo H M; Martin, Scot T; de Souza, Rodrigo Augusto Ferreira

2018-05-15

The present study examines the spatiotemporal variability and interrelations of the atmospheric methane (CH 4 ), carbon monoxide (CO) and biomass burning (BB) outbreaks retrieved from satellite data over the Amazon region during the 2003-2012 period. In the climatological context, we found consistent seasonal cycles of BB outbreaks and CO in the Amazon, both variables showing a peak during the dry season. The dominant CO variability mode features the largest positive loadings in the southern Amazon, and describes the interannual CO variations related to BB outbreaks along the deforestation arc during the dry season. In line with CO variability and BB outbreaks, the results show strong correspondence with the spatiotemporal variability of CH 4 in the southern Amazon during years of intense drought. Indeed, the areas with the largest positive CH 4 anomalies in southern Amazon overlap the areas with high BB outbreaks and positive CO anomalies. The analyses also showed that high (low) BB outbreaks in the southern Amazon occur during dry (wet) years. In consequence, the interannual climate variability modulates the BB outbreaks in the southern Amazon, which in turn have considerable impacts on CO and CH 4 interannual variability in the region. Therefore, the BB outbreaks might play a major role in modulating the CH 4 and CO variations, at least in the southern Amazon. This study also provides a comparison between the estimate of satellite and aircraft measurements for the CH 4 over the southern Amazon, which indicates relatively small differences from the aircraft measurements in the lower troposphere, with errors ranging from 0.18% to 1.76%. Copyright © 2017 Elsevier B.V. All rights reserved.

Multispecies Fisheries in the Lower Amazon River and Its Relationship with the Regional and Global Climate Variability

PubMed Central

Buss de Souza, Ronald; Freire, Juan; Isaac, Victoria Judith

2016-01-01

This paper aims to describe the spatial-temporal variability in catch of the main fishery resources of the Amazon River and floodplain lakes of the Lower Amazon, as well as relating the Catch per Unit of Effort with anomalies of some of the Amazon River, atmosphere and Atlantic Ocean system variables, determining the influence of the environment on the Amazonian fishery resources. Finfish landings data from the towns and villages of the Lower Amazon for the fisheries of three sites (Óbidos, Santarém and Monte Alegre), were obtained for the period between January 1993 and December 2004. Analysis of variance, detrended correspondence analysis, redundancy analysis and multiple regression techniques were used for the statistical analysis of the distinct time series. Fisheries production in the Lower Amazon presents differences between the Amazon River and the floodplain lakes. Production in the Amazon River is approximately half of the one of the floodplain lakes. This variability occurs both along the Lower Amazon River region (longitudinal gradient) and laterally (latitudinal gradient) for every fishing ground studied here. The distinct environmental variables alone or in association act differently on the fishery stocks and the success of catches in each fishery group studied here. Important variables are the flooding events; the soil the sea surface temperatures; the humidity; the wind and the occurence of El Niño-Southern Oscillation events. Fishery productivity presents a large difference in quantity and distribution patterns between the river and floodplain lakes. This variability occurs in the region of the Lower Amazon as well as laterally for each fishery group studied, being dependent on the ecological characteristics and life strategies of each fish group considered here. PMID:27314951

Socio-ecological costs of Amazon nut and timber production at community household forests in the Bolivian Amazon

PubMed Central

Mohren, Frits; Ascarrunz, Nataly; Dressler, Wolfram; Peña-Claros, Marielos

2017-01-01

The Bolivian Amazon holds a complex configuration of people and forested landscapes in which communities hold secure tenure rights over a rich ecosystem offering a range of livelihood income opportunities. A large share of this income is derived from Amazon nut (Bertholletia excelsa). Many communities also have long-standing experience with community timber management plans. However, livelihood needs and desires for better living conditions may continue to place these resources under considerable stress as income needs and opportunities intensify and diversify. We aim to identify the socioeconomic and biophysical factors determining the income from forests, husbandry, off-farm and two keystone forest products (i.e., Amazon nut and timber) in the Bolivian Amazon region. We used structural equation modelling tools to account for the complex inter-relationships between socioeconomic and biophysical factors in predicting each source of income. The potential exists to increase incomes from existing livelihood activities in ways that reduce dependency upon forest resources. For example, changes in off-farm income sources can act to increase or decrease forest incomes. Market accessibility, social, financial, and natural and physical assets determined the amount of income community households could derive from Amazon nut and timber. Factors related to community households’ local ecological knowledge, such as the number of non-timber forest products harvested and the number of management practices applied to enhance Amazon nut production, defined the amount of income these households could derive from Amazon nut and timber, respectively. The (inter) relationships found among socioeconomic and biophysical factors over income shed light on ways to improve forest-dependent livelihoods in the Bolivian Amazon. We believe that our analysis could be applicable to other contexts throughout the tropics as well. PMID:28235090

East of the Andes: The genetic profile of the Peruvian Amazon populations.

PubMed

Di Corcia, T; Sanchez Mellado, C; Davila Francia, T J; Ferri, G; Sarno, S; Luiselli, D; Rickards, O

2017-06-01

Assuming that the differences between the Andes and the Amazon rainforest at environmental and historical levels have influenced the distribution patterns of genes, languages, and cultures, the maternal and paternal genetic reconstruction of the Peruvian Amazon populations was used to test the relationships within and between these two extreme environments. We analyzed four Peruvian Amazon communities (Ashaninka, Huambisa, Cashibo, and Shipibo) for both Y chromosome (17 STRs and 8 SNPs) and mtDNA data (control region sequences, two diagnostic sites of the coding region, and one INDEL), and we studied their variability against the rest of South America. We detected a high degree of genetic diversity in the Peruvian Amazon people, both for mtDNA than for Y chromosome, excepting for Cashibo people, who seem to have had no exchanges with their neighbors, in contrast with the others communities. The genetic structure follows the divide between the Andes and the Amazon, but we found a certain degree of gene flow between these two environments, as particularly emerged with the Y chromosome descent cluster's (DCs) analysis. The Peruvian Amazon is home to an array of populations with differential rates of genetic exchanges with their neighbors and with the Andean people, depending on their peculiar demographic histories. We highlighted some successful Y chromosome lineages expansions originated in Peru during the pre-Columbian history which involved both Andeans and Amazon Arawak people, showing that at least a part of the Amazon rainforest did not remain isolated from those exchanges. © 2017 Wiley Periodicals, Inc.

Amazon Forest Responses to Drought and Fire

NASA Astrophysics Data System (ADS)

Morton, D. C.

2015-12-01

Deforestation and agricultural land uses provide a consistent source of ignitions along the Amazon frontier during the dry season. The risk of understory fires in Amazon forests is amplified by drought conditions, when fires at the forest edge may spread for weeks before rains begin. Fire activity also impacts the regional response of intact forests to drought through diffuse light effects and nutrient redistribution, highlighting the complexity of feedbacks in this coupled human and natural system. This talk will focus on recent advances in our understanding of fire-climate feedbacks in the Amazon, building on research themes initiated under NASA's Large-scale Biosphere-Atmosphere Experiment in Amazonia (LBA). NASA's LBA program began in the wake of the 1997-1998 El Niño, a strong event that exposed the vulnerability of Amazon forests to drought and fire under current climate and projections of climate change. With forecasts of another strong El Niño event in 2015-2016, this talk will provide a multi-scale synthesis of Amazon forest responses to drought and fire based on field measurements, airborne lidar data, and satellite observations of fires, rainfall, and terrestrial water storage. These studies offer new insights into the mechanisms governing fire season severity in the southern Amazon and regional variability in carbon losses from understory fires. The contributions from remote sensing to our understanding of drought and fire in Amazon forests reflect the legacy of NASA's LBA program and the sustained commitment to interdisciplinary research across the Amazon region.

Application of DNA Barcodes in Asian Tropical Trees--A Case Study from Xishuangbanna Nature Reserve, Southwest China.

PubMed

Huang, Xiao-cui; Ci, Xiu-qin; Conran, John G; Li, Jie

2015-01-01

Within a regional floristic context, DNA barcoding is more useful to manage plant diversity inventories on a large scale and develop valuable conservation strategies. However, there are no DNA barcode studies from tropical areas of China, which represents one of the biodiversity hotspots around the world. A DNA barcoding database of an Asian tropical trees with high diversity was established at Xishuangbanna Nature Reserve, Yunnan, southwest China using rbcL and matK as standard barcodes, as well as trnH-psbA and ITS as supplementary barcodes. The performance of tree species identification success was assessed using 2,052 accessions from four plots belonging to two vegetation types in the region by three methods: Neighbor-Joining, Maximum-Likelihood and BLAST. We corrected morphological field identification errors (9.6%) for the three plots using rbcL and matK based on Neighbor-Joining tree. The best barcode region for PCR and sequencing was rbcL (97.6%, 90.8%), followed by trnH-psbA (93.6%, 85.6%), while matK and ITS obtained relative low PCR and sequencing success rates. However, ITS performed best for both species (44.6-58.1%) and genus (72.8-76.2%) identification. With trnH-psbA slightly less effective for species identification. The two standard barcode rbcL and matK gave poor results for species identification (24.7-28.5% and 31.6-35.3%). Compared with other studies from comparable tropical forests (e.g. Cameroon, the Amazon and India), the overall performance of the four barcodes for species identification was lower for the Xishuangbanna Nature Reserve, possibly because of species/genus ratios and species composition between these tropical areas. Although the core barcodes rbcL and matK were not suitable for species identification of tropical trees from Xishuangbanna Nature Reserve, they could still help with identification at the family and genus level. Considering the relative sequence recovery and the species identification performance, we recommend the use of trnH-psbA and ITS in combination as the preferred barcodes for tropical tree species identification in China.

Molecular taxonomy of the two Leishmania vectors Lutzomyia umbratilis and Lutzomyia anduzei (Diptera: Psychodidae) from the Brazilian Amazon

PubMed Central

2013-01-01

Background Lutzomyia umbratilis (a probable species complex) is the main vector of Leishmania guyanensis in the northern region of Brazil. Lutzomyia anduzei has been implicated as a secondary vector of this parasite. These species are closely related and exhibit high morphological similarity in the adult stage; therefore, they have been wrongly identified, both in the past and in the present. This shows the need for employing integrated taxonomy. Methods With the aim of gathering information on the molecular taxonomy and evolutionary relationships of these two vectors, 118 sequences of 663 base pairs (barcode region of the mitochondrial DNA cytochrome oxidase I – COI) were generated from 72 L. umbratilis and 46 L. anduzei individuals captured, respectively, in six and five localities of the Brazilian Amazon. The efficiency of the barcode region to differentiate the L. umbratilis lineages I and II was also evaluated. The data were analyzed using the pairwise genetic distances matrix and the Neighbor-Joining (NJ) tree, both based on the Kimura Two Parameter (K2P) evolutionary model. Results The analyses resulted in 67 haplotypes: 32 for L. umbratilis and 35 for L. anduzei. The mean intra-specific genetic distance was 0.008 (0.002 to 0.010 for L. umbratilis; 0.008 to 0.014 for L. anduzei), whereas the mean interspecific genetic distance was 0.044 (0.041 to 0.046), supporting the barcoding gap. Between the L. umbratilis lineages I and II, it was 0.009 to 0.010. The NJ tree analysis strongly supported monophyletic clades for both L. umbratilis and L. anduzei, whereas the L. umbratilis lineages I and II formed two poorly supported monophyletic subclades. Conclusions The barcode region clearly separated the two species and may therefore constitute a valuable tool in the identification of the sand fly vectors of Leishmania in endemic leishmaniasis areas. However, the barcode region had not enough power to separate the two lineages of L. umbratilis, likely reflecting incipient species that have not yet reached the status of distinct species. PMID:24021095

Molecular taxonomy of the two Leishmania vectors Lutzomyia umbratilis and Lutzomyia anduzei (Diptera: Psychodidae) from the Brazilian Amazon.

PubMed

Scarpassa, Vera Margarete; Alencar, Ronildo Baiatone

2013-09-11

Lutzomyia umbratilis (a probable species complex) is the main vector of Leishmania guyanensis in the northern region of Brazil. Lutzomyia anduzei has been implicated as a secondary vector of this parasite. These species are closely related and exhibit high morphological similarity in the adult stage; therefore, they have been wrongly identified, both in the past and in the present. This shows the need for employing integrated taxonomy. With the aim of gathering information on the molecular taxonomy and evolutionary relationships of these two vectors, 118 sequences of 663 base pairs (barcode region of the mitochondrial DNA cytochrome oxidase I - COI) were generated from 72 L. umbratilis and 46 L. anduzei individuals captured, respectively, in six and five localities of the Brazilian Amazon. The efficiency of the barcode region to differentiate the L. umbratilis lineages I and II was also evaluated. The data were analyzed using the pairwise genetic distances matrix and the Neighbor-Joining (NJ) tree, both based on the Kimura Two Parameter (K2P) evolutionary model. The analyses resulted in 67 haplotypes: 32 for L. umbratilis and 35 for L. anduzei. The mean intra-specific genetic distance was 0.008 (0.002 to 0.010 for L. umbratilis; 0.008 to 0.014 for L. anduzei), whereas the mean interspecific genetic distance was 0.044 (0.041 to 0.046), supporting the barcoding gap. Between the L. umbratilis lineages I and II, it was 0.009 to 0.010. The NJ tree analysis strongly supported monophyletic clades for both L. umbratilis and L. anduzei, whereas the L. umbratilis lineages I and II formed two poorly supported monophyletic subclades. The barcode region clearly separated the two species and may therefore constitute a valuable tool in the identification of the sand fly vectors of Leishmania in endemic leishmaniasis areas. However, the barcode region had not enough power to separate the two lineages of L. umbratilis, likely reflecting incipient species that have not yet reached the status of distinct species.

Improving Oil Palm Classification in the Peruvian Amazon by Combining Active and Passive Remote Sensing Data

NASA Astrophysics Data System (ADS)

Gutierrez-Velez, V. H.; DeFries, R. S.

2011-12-01

Oil palm expansion has led to clearing of extensive forest areas in the tropics. However quantitative assessments of the magnitude of oil palm expansion to deforestation have been challenging due in large part to the limitations presented by conventional optical data sets for discriminating plantations from forests and other tree cover vegetations. Recently available information from active remote sensors has opened the possibility of using these data sources to overcome these limitations. The purpose of this analysis is to evaluate the accuracy of oil palm classification when using ALOS/PALSAR active satellite data in conjunction with Landsat information, compared to the use of Landsat data only. The analysis takes place in a focused region around the city of Pucallpa in the Ucayali province of the Peruvian Amazon for the year 2010. Oil palm plantations were separated in five categories consisting of four age classes (0-3, 3-5, 5-10 and > 10 yrs) and an additional class accounting for degraded plantations older than 15 yr. Other land covers were water bodies, unvegetated land, short and tall grass, fallow, secondary vegetation, and forest. Classifications were performed using random forests. Training points for calibration and validation consisted of 411 polygons measured in areas representative of the land covers of interest and totaled 6,367 ha. Overall classification accuracy increased from 89.9% using only Landsat data sets to 94.3% using both Landast and ALOS/PALSAR. Both user's and producer's accuracy increased in all classes when using both data sets except for producer's accuracy in short grass which decreased by 1%. The largest increase in user's accuracy was obtained in oil palm plantations older than 10 years from 62 to 80% while producer's accuracy improved the most in plantations in age class 3-5 from 63 to 80%. Results demonstrate the suitability of data from ALOS/PALSAR and other active remote sensors to improve classification of oil palm plantations in age classes and discriminate them from other land covers. Results suggest a potential for improving discrimination of other tree cover types using a combination of active and conventional optical remote sensors.

Coordination of physiological and structural traits in Amazon forest trees

NASA Astrophysics Data System (ADS)

Patiño, S.; Fyllas, N. M.; Baker, T. R.; Paiva, R.; Quesada, C. A.; Santos, A. J. B.; Schwarz, M.; Ter Steege, H.; Phillips, O. L.; Lloyd, J.

2011-05-01

Many plant traits covary in a non-random manner reflecting interdependencies associated with "ecological strategy" dimensions. To understand how plants modulate their structural investments to best maintain and utilise their physiological capabilities, data on leaf and leaflet size and the ratio of leaf area to sapwood area (ΦLS) obtained for 1040 tree species located in 53 tropical forest plots across the Amazon Basin were incorporated into an analysis utilising existing data on species maximum height (Hmax), seed size, leaf mass per unit area (MA), foliar nutrients and δ13C and branch xylem density (ρx). Utilising a common principal components approach allowing eigenvalues to vary between two soil fertility dependent species groups, five genetically controlled trait dimensions were identified. The first involves primarily cations, foliar carbon and MA and is associated with differences in foliar construction costs. The second relates to the classic "leaf economic spectrum", but with increased individual leaf areas and a higher ΦLS newly identified components. The third relates primarily to increasing Hmax and hence variations in light acquisition strategy involving greater MA, reductions in ΦLS and less negative δ13C. Although these first three dimensions were more important for species from high fertility sites the final two dimensions were more important for low fertility species and were associated with variations linked to reproductive and shade tolerance strategies. Environmental conditions also influenced structural traits with ρx decreasing with increased soil fertility and decreasing with increased temperatures. This soil fertility response appears to be synchronised with increases in foliar nutrient concentrations and reductions in foliar [C]. Leaf and leaflet area and ΦLS were less responsive to the environment than ρx. Thus although genetically determined foliar traits such as those associated with leaf construction costs coordinate independently of structural characteristics, others tend to covary with leaf size, ΦLS, S tolerance strategies. Several traits such as MA and [C] are important components of more than one dimension with their ambiguous nature reflecting different underlying causes of variation. Environmental effects on structural and physiological characteristics are also coordinated but in a different way to the gamut of linkages associated with genotypic differences.

Ecological specialization and morphological diversification in Greater Antillean boas.

PubMed

Reynolds, R Graham; Collar, David C; Pasachnik, Stesha A; Niemiller, Matthew L; Puente-Rolón, Alberto R; Revell, Liam J

2016-08-01

Colonization of islands can dramatically influence the evolutionary trajectories of organisms, with both deterministic and stochastic processes driving adaptation and diversification. Some island colonists evolve extremely large or small body sizes, presumably in response to unique ecological circumstances present on islands. One example of this phenomenon, the Greater Antillean boas, includes both small (<90 cm) and large (4 m) species occurring on the Greater Antilles and Bahamas, with some islands supporting pairs or trios of body-size divergent species. These boas have been shown to comprise a monophyletic radiation arising from a Miocene dispersal event to the Greater Antilles, though it is not known whether co-occurrence of small and large species is a result of dispersal or in situ evolution. Here, we provide the first comprehensive species phylogeny for this clade combined with morphometric and ecological data to show that small body size evolved repeatedly on separate islands in association with specialization in substrate use. Our results further suggest that microhabitat specialization is linked to increased rates of head shape diversification among specialists. Our findings show that ecological specialization following island colonization promotes morphological diversity through deterministic body size evolution and cranial morphological diversification that is contingent on island- and species-specific factors. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

The influence of industrial and agricultural waste on water quality in the Água Boa stream (Dourados, Mato Grosso do Sul, Brazil).

PubMed

da Rocha, Monyque Palagano; Dourado, Priscila Leocadia Rosa; de Souza Rodrigues, Mayara; Raposo, Jorge Luiz; Grisolia, Alexeia Barufatti; de Oliveira, Kelly Mari Pires

2015-07-01

Water quality monitoring is used to determine the impact of human activities on the environment. We evaluated water quality in the Água Boa stream, located within the municipality of Dourados, State of Mato Grosso do Sul, Brazil, by analyzing physico-chemical, chemical, and microbiological parameters, as well as chlorophyll concentrations. Five sets of water samples were collected between December 2012 and November 2013 from three locations within the stream. The results showed the presence of Escherichia coli and antibiotic-resistant Pseudomonas spp. strains and high concentrations of organic matter (total dissolved solids), inorganic species (Mg, Ca, and Fe), and agrochemical residues (thiamethoxam). The main stream water contaminants are derived from urban, industrial, and agricultural activities within the watershed. Given the presence of contaminants, it is important that such findings are disseminated in order to highlight the risks that contact with this water may pose to human health. To preserve the environment and improve site conditions, people would need to participate by demanding that normative national and international standards be respected and that the situation be supervised by the competent governmental agencies; this would make it possible to reverse or minimize contamination problems within the Água Boa stream.

Environmental DNA (eDNA) Sampling Improves Occurrence and Detection Estimates of Invasive Burmese Pythons

PubMed Central

Hunter, Margaret E.; Oyler-McCance, Sara J.; Dorazio, Robert M.; Fike, Jennifer A.; Smith, Brian J.; Hunter, Charles T.; Reed, Robert N.; Hart, Kristen M.

2015-01-01

Environmental DNA (eDNA) methods are used to detect DNA that is shed into the aquatic environment by cryptic or low density species. Applied in eDNA studies, occupancy models can be used to estimate occurrence and detection probabilities and thereby account for imperfect detection. However, occupancy terminology has been applied inconsistently in eDNA studies, and many have calculated occurrence probabilities while not considering the effects of imperfect detection. Low detection of invasive giant constrictors using visual surveys and traps has hampered the estimation of occupancy and detection estimates needed for population management in southern Florida, USA. Giant constrictor snakes pose a threat to native species and the ecological restoration of the Florida Everglades. To assist with detection, we developed species-specific eDNA assays using quantitative PCR (qPCR) for the Burmese python (Python molurus bivittatus), Northern African python (P. sebae), boa constrictor (Boa constrictor), and the green (Eunectes murinus) and yellow anaconda (E. notaeus). Burmese pythons, Northern African pythons, and boa constrictors are established and reproducing, while the green and yellow anaconda have the potential to become established. We validated the python and boa constrictor assays using laboratory trials and tested all species in 21 field locations distributed in eight southern Florida regions. Burmese python eDNA was detected in 37 of 63 field sampling events; however, the other species were not detected. Although eDNA was heterogeneously distributed in the environment, occupancy models were able to provide the first estimates of detection probabilities, which were greater than 91%. Burmese python eDNA was detected along the leading northern edge of the known population boundary. The development of informative detection tools and eDNA occupancy models can improve conservation efforts in southern Florida and support more extensive studies of invasive constrictors. Generic sampling design and terminology are proposed to standardize and clarify interpretations of eDNA-based occupancy models. PMID:25874630

Environmental DNA (eDNA) sampling improves occurrence and detection estimates of invasive Burmese pythons

USGS Publications Warehouse

Hunter, Margaret E.; Oyler-McCance, Sara J.; Dorazio, Robert M.; Fike, Jennifer A.; Smith, Brian J.; Hunter, Charles T.; Reed, Robert N.; Hart, Kristen M.

2015-01-01

Environmental DNA (eDNA) methods are used to detect DNA that is shed into the aquatic environment by cryptic or low density species. Applied in eDNA studies, occupancy models can be used to estimate occurrence and detection probabilities and thereby account for imperfect detection. However, occupancy terminology has been applied inconsistently in eDNA studies, and many have calculated occurrence probabilities while not considering the effects of imperfect detection. Low detection of invasive giant constrictors using visual surveys and traps has hampered the estimation of occupancy and detection estimates needed for population management in southern Florida, USA. Giant constrictor snakes pose a threat to native species and the ecological restoration of the Florida Everglades. To assist with detection, we developed species-specific eDNA assays using quantitative PCR (qPCR) for the Burmese python (Python molurus bivittatus), Northern African python (P. sebae), boa constrictor (Boa constrictor), and the green (Eunectes murinus) and yellow anaconda (E. notaeus). Burmese pythons, Northern African pythons, and boa constrictors are established and reproducing, while the green and yellow anaconda have the potential to become established. We validated the python and boa constrictor assays using laboratory trials and tested all species in 21 field locations distributed in eight southern Florida regions. Burmese python eDNA was detected in 37 of 63 field sampling events; however, the other species were not detected. Although eDNA was heterogeneously distributed in the environment, occupancy models were able to provide the first estimates of detection probabilities, which were greater than 91%. Burmese python eDNA was detected along the leading northern edge of the known population boundary. The development of informative detection tools and eDNA occupancy models can improve conservation efforts in southern Florida and support more extensive studies of invasive constrictors. Generic sampling design and terminology are proposed to standardize and clarify interpretations of eDNA-based occupancy models.

Environmental DNA (eDNA) sampling improves occurrence and detection estimates of invasive burmese pythons.

PubMed

Hunter, Margaret E; Oyler-McCance, Sara J; Dorazio, Robert M; Fike, Jennifer A; Smith, Brian J; Hunter, Charles T; Reed, Robert N; Hart, Kristen M

2015-01-01

Environmental DNA (eDNA) methods are used to detect DNA that is shed into the aquatic environment by cryptic or low density species. Applied in eDNA studies, occupancy models can be used to estimate occurrence and detection probabilities and thereby account for imperfect detection. However, occupancy terminology has been applied inconsistently in eDNA studies, and many have calculated occurrence probabilities while not considering the effects of imperfect detection. Low detection of invasive giant constrictors using visual surveys and traps has hampered the estimation of occupancy and detection estimates needed for population management in southern Florida, USA. Giant constrictor snakes pose a threat to native species and the ecological restoration of the Florida Everglades. To assist with detection, we developed species-specific eDNA assays using quantitative PCR (qPCR) for the Burmese python (Python molurus bivittatus), Northern African python (P. sebae), boa constrictor (Boa constrictor), and the green (Eunectes murinus) and yellow anaconda (E. notaeus). Burmese pythons, Northern African pythons, and boa constrictors are established and reproducing, while the green and yellow anaconda have the potential to become established. We validated the python and boa constrictor assays using laboratory trials and tested all species in 21 field locations distributed in eight southern Florida regions. Burmese python eDNA was detected in 37 of 63 field sampling events; however, the other species were not detected. Although eDNA was heterogeneously distributed in the environment, occupancy models were able to provide the first estimates of detection probabilities, which were greater than 91%. Burmese python eDNA was detected along the leading northern edge of the known population boundary. The development of informative detection tools and eDNA occupancy models can improve conservation efforts in southern Florida and support more extensive studies of invasive constrictors. Generic sampling design and terminology are proposed to standardize and clarify interpretations of eDNA-based occupancy models.

Metabolic Pathway Involved in 6-Chloro-2-Benzoxazolinone Degradation by Pigmentiphaga sp. Strain DL-8 and Identification of the Novel Metal-Dependent Hydrolase CbaA

PubMed Central

Dong, Weiliang; Wang, Fei; Huang, Fei; Wang, Yicheng; Zhou, Jie; Ye, Xianfeng; Li, Zhoukun; Hou, Ying; Huang, Yan; Ma, Jiangfeng; Jiang, Min

2016-01-01

ABSTRACT 6-Chloro-2-benzoxazolinone (CDHB) is a precursor of herbicide, insecticide, and fungicide synthesis and has a broad spectrum of biological activity. Pigmentiphaga sp. strain DL-8 can transform CDHB into 2-amino-5-chlorophenol (2A5CP), which it then utilizes as a carbon source for growth. The CDHB hydrolase (CbaA) was purified from strain DL-8, which can also hydrolyze 2-benzoxazolinone (BOA), 5-chloro-2-BOA, and benzamide. The specific activity of purified CbaA was 5,900 U · mg protein−1 for CDHB, with Km and kcat values of 0.29 mM and 8,500 s−1, respectively. The optimal pH for purified CbaA was 9.0, the highest activity was observed at 55°C, and the inactive metal-free enzyme could be reactivated by Mg2+, Ni2+, Ca2+, or Zn2+. Based on the results obtained for the CbaA peptide mass fingerprinting and draft genome sequence of strain DL-8, cbaA (encoding 339 amino acids) was cloned and expressed in Escherichia coli BL21(DE3). CbaA shared 18 to 21% identity with some metal-dependent hydrolases of the PF01499 family and contained the signature metal-binding motif Q127XXXQ131XD133XXXH137. The conserved amino acid residues His288 and Glu301 served as the proton donor and acceptor. E. coli BL21(DE3-pET-cbaA) resting cells could transform 0.2 mM CDHB into 2A5CP. The mutant strain DL-8ΔcbaA lost the ability to degrade CDHB but retained the ability to degrade 2A5CP, consistent with strain DL-8. These results indicated that cbaA was the key gene responsible for CDHB degradation by strain DL-8. IMPORTANCE 2-Benzoxazolinone (BOA) derivatives are widely used as synthetic intermediates and are also an important group of allelochemicals acting in response to tissue damage or pathogen attack in gramineous plants. However, the degradation mechanism of BOA derivatives by microorganisms is not clear. In the present study, we reported the identification of CbaA and metabolic pathway responsible for the degradation of CDHB in Pigmentiphaga sp. DL-8. This will provide microorganism and gene resources for the bioremediation of the environmental pollution caused by BOA derivatives. PMID:27208123

Security of the Brazilian Amazon Area

DTIC Science & Technology

1992-04-01

effect in Amazonia". Brazil’s Institute for Space Research. Sio Paulo, April 1991: 5-6. Thompson, Dick. "A Global Agenda for the Amazon." Time, 18...to be overcome as Brazil pursues settlement and development of the Amazon. The natural ecologic systems of the Amazon must be defended with...agricultural techniques appropriate to the region and developed within the context of a comprehensive, responsible program that meets Brazil’s needs for

Cloud characteristics, thermodynamic controls and radiative impacts during the Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Giangrande, Scott E.; Feng, Zhe; Jensen, Michael P.

Routine cloud, precipitation and thermodynamic observations collected by the Atmospheric Radiation Measurement (ARM) Mobile Facility (AMF) and Aerial Facility (AAF) during the 2-year US Department of Energy (DOE) ARM Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) campaign are summarized. These observations quantify the diurnal to large-scale thermodynamic regime controls on the clouds and precipitation over the undersampled, climatically important Amazon basin region. The extended ground deployment of cloud-profiling instrumentation enabled a unique look at multiple cloud regimes at high temporal and vertical resolution. This longer-term ground deployment, coupled with two short-term aircraft intensive observing periods, allowed new opportunitiesmore » to better characterize cloud and thermodynamic observational constraints as well as cloud radiative impacts for modeling efforts within typical Amazon wet and dry seasons.« less

An explicit GIS-based river basin framework for aquatic ecosystem conservation in the Amazon

NASA Astrophysics Data System (ADS)

Venticinque, Eduardo; Forsberg, Bruce; Barthem, Ronaldo; Petry, Paulo; Hess, Laura; Mercado, Armando; Cañas, Carlos; Montoya, Mariana; Durigan, Carlos; Goulding, Michael

2016-11-01

Despite large-scale infrastructure development, deforestation, mining and petroleum exploration in the Amazon Basin, relatively little attention has been paid to the management scale required for the protection of wetlands, fisheries and other aspects of aquatic ecosystems. This is due, in part, to the enormous size, multinational composition and interconnected nature of the Amazon River system, as well as to the absence of an adequate spatial model for integrating data across the entire Amazon Basin. In this data article we present a spatially uniform multi-scale GIS framework that was developed especially for the analysis, management and monitoring of various aspects of aquatic systems in the Amazon Basin. The Amazon GIS-Based River Basin Framework is accessible as an ESRI geodatabase at doi:10.5063/F1BG2KX8.

Deforestation effects on Amazon forest resilience

NASA Astrophysics Data System (ADS)

Zemp, D. C.; Schleussner, C.-F.; Barbosa, H. M. J.; Rammig, A.

2017-06-01

Through vegetation-atmosphere feedbacks, rainfall reductions as a result of Amazon deforestation could reduce the resilience on the remaining forest to perturbations and potentially lead to large-scale Amazon forest loss. We track observation-based water fluxes from sources (evapotranspiration) to sinks (rainfall) to assess the effect of deforestation on continental rainfall. By studying 21st century deforestation scenarios, we show that deforestation can reduce dry season rainfall by up to 20% far from the deforested area, namely, over the western Amazon basin and the La Plata basin. As a consequence, forest resilience is systematically eroded in the southwestern region covering a quarter of the current Amazon forest. Our findings suggest that the climatological effects of deforestation can lead to permanent forest loss in this region. We identify hot spot regions where forest loss should be avoided to maintain the ecological integrity of the Amazon forest.

Cloud characteristics, thermodynamic controls and radiative impacts during the Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) experiment

DOE PAGES

Giangrande, Scott E.; Feng, Zhe; Jensen, Michael P.; ...

2017-12-06

Routine cloud, precipitation and thermodynamic observations collected by the Atmospheric Radiation Measurement (ARM) Mobile Facility (AMF) and Aerial Facility (AAF) during the 2-year US Department of Energy (DOE) ARM Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) campaign are summarized. These observations quantify the diurnal to large-scale thermodynamic regime controls on the clouds and precipitation over the undersampled, climatically important Amazon basin region. The extended ground deployment of cloud-profiling instrumentation enabled a unique look at multiple cloud regimes at high temporal and vertical resolution. This longer-term ground deployment, coupled with two short-term aircraft intensive observing periods, allowed new opportunitiesmore » to better characterize cloud and thermodynamic observational constraints as well as cloud radiative impacts for modeling efforts within typical Amazon wet and dry seasons.« less

Investigation into the cytotoxicity and mutagenicity of the Marajó Archipelago waters using Plagioscion squamosissimus (Perciformes: Sciaenidae) as a bioindicator.

PubMed

Rocha, Carlos Alberto Machado da; Pessoa, Carla Mariana Ferreira; Rodrigues, Claudia Antonia Campos; Pinheiro, Raul Henrique da Silva; Costa, Edmar Tavares da; Guimarães, Adriana Costa; Burbano, Rommel Rodríguez

2016-10-01

Maintaining water quality within tolerable limits is a basic need of the riverside communities in the Amazon. Using endemic aquatic organisms as biological models is useful for monitoring the environment. In this study, potential cytotoxic and genotoxic damages in Plagioscion squamosissimus (commonly known as silver croaker) from the Marajó Archipelago were evaluated using a flow cytometry assay and a survey of micronuclei (MN) frequency as well as other nuclear abnormalities (NA). P. squamosissimus specimens were collected at four locations in the Marajó Archipelago. Blood samples from these fish were used in the flow cytometry assay and piscine micronucleus test, and the resulting data were analyzed using analysis of variance (ANOVA). We did not observe a difference in the erythrocyte cell cycle distribution among the samples (P=0.9992), which suggests the absence of cytotoxic agent-induced apoptosis. The piscine micronucleus test exhibited differences in the samples from São Sebastião da Boa Vista (SSBV), and those from Anajás produced the highest mutagenicity indices. The MN frequencies were low for all groups, but the groups exhibited significantly different frequencies (P=0.0033). Reniform nuclei, nuclei with extensions, and lobed nuclei were combined and considered NA. The frequency differences for these NA were significant among sampling sites (P <0.0001). This report is the first to use flow cytometry in fish to evaluate cytotoxic agent-induced apoptosis. The micronucleus test results indicate the presence of pollutants that can change the genetic material of the fish studied. We also demonstrate that the Amazonian fish P. squamosissimus is important not only as a comestible species but also as an adequate model for biomonitoring in aquatic environments. Copyright © 2016 Elsevier Inc. All rights reserved.

Constancy in the vegetation of the Amazon Basin during the late Pleistocene: Evidence from the organic matter composition of Amazon deep sea fan sediments

NASA Astrophysics Data System (ADS)

Kastner, Thomas P.; Goñi, Miguel A.

2003-04-01

Analyses of more than 60 sediment samples from the Amazon deep sea fan show remarkably constant terrigenous biomarkers (lignin phenols and cutin acids) and stable carbon isotopic compositions of organic matter (δ13COM) deposited from 10 to 70 ka. Sediments from the nine Amazon deep sea fan channel-levee systems investigated in this study yielded relatively narrow ranges for diagnostic parameters such as organic carbon (OC) normalized total lignin yields (Λ = 3.1 ± 1.1 mg/100 mg OC), syringyl:vanillyl phenol ratios (S/V = 0.84 ± 0.06), cinnamyl:vanillyl phenol ratios (C/V = 0.08 ± 0.02), isomeric abundances of cutin-derived dihydroxyhexadecanoic acid (f10,16-OH = 0.65 ± 0.02), and δ13COM (-27.6% ± 0.6 ‰). Our measurements support the hypothesis that the vegetation of the Amazon Basin did not change significantly during the late Pleistocene, even during the Last Glacial Maximum. Moreover, the compositions obtained from the Amazon deep sea fan are similar to those of modern Amazon River suspended sediments. Such results strongly indicate that the current tropical rainforest vegetation has been a permanent and dominant feature of the Amazon River watershed over the past 70 k.y. Specifically, we found no evidence for the development of large savannas that had been previously postulated as indicators of increased glacial aridity in Amazonia. Climate models need to be modified to account for the uninterrupted input of moisture to the tropical Amazon region over the late Pleistocene Holocene period.

Diversity of bats trypanosomes in hydroeletric area of Belo Monte in Brazilian Amazonia.

PubMed

da Costa, Andréa P; Nunes, Pablo Henrique; Leite, Beatriz Helena Santos; Ferreira, Juliana Isabel G da S; Tonhosolo, Renata; da Rosa, Adriana Ruckert; da Rocha, Patricio Adriano; Aires, Caroline Cotrim; Gennari, Solange Maria; Marcili, Arlei

2016-12-01

The Trypanosoma comprises flagellates able to infect many mammalian species and is transmitted by several groups of invertebrates. The order Chiroptera can be infected by the subgenera Herpetosoma, Schizotrypanum, Megatrypanum and Trypanozoon. In this study, we described the diversity of bats trypanosomes, inferring the phylogenetic relationships among the trypanosomes from bats caught Belo Monte Hydroeletric area (Brazilian Amazonia). Trypanosomes from bats were isolated by haemoculture, and the molecular phylogeny based on small subunit rDNA (SSU rDNA) and glycosomal-3-phosphate dehydrogenase (gGAPDH) gene sequences. Morphological characterization included light and scanning electron microscopy. A total of 157 bats were caught in the area belonging 6 Families (Emballonuridae, Furipteridae, Mormoopidae, Natalidae, Phyllostomidae and Vespertilionidae) and 34 species. The bat trypanosome prevalence, as evaluated through haemoculture, was 5,7%. Phylogenetic trees grouped the isolates in T. cruzi branch (TCI and TCbat lineage), T. cruzi marinkellei and Trypanosoma wauwau from Pteronotus parnellii. This is the first isolate from T. wauwau in Para state. The occurrence of T. cruzi in the ​​ Belo Monte Hydroeletric area (UHE Belo Monte) in Amazon/Brazil attentive to the risk of migration human population required for the works of the dam and new cities that grow in the vicinity of these businesses, but it is a zoonosis already known to the Amazon region, and the presence of unclassified Trypanosoma species, attend to the large parasitic biodiversity still unknown. Copyright © 2016 Elsevier B.V. All rights reserved.

77 FR 40084 - Certain Portable Communication Devices; Determination Not To Review Initial Determinations...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-06

...''); Amazon.com , Inc. of Seattle, Washington (``Amazon''); Nokia Corporation of Espoo, Finland, Nokia Inc. of..., Motorola, Samsung, Sony, Amazon, and Pantech filed a joint motion under Commission Rule 210.21(a)(2) to...

Measuring Water Storage in the Amazon

NASA Image and Video Library

2010-07-07

This image is from data taken by NASA Gravity Recovery and Climate Experiment showing the Amazon basin in South America. The amount of water stored in the Amazon basin varies from month to month. Animations are available at the Photojournal.

How Do Tropical Sea Surface Temperatures Influence the Seasonal Distribution of Precipitation in the Equatorial Amazon?.

NASA Astrophysics Data System (ADS)

Fu, Rong; Dickinson, Robert E.; Chen, Mingxuan; Wang, Hui

2001-10-01

Although the correlation between precipitation over tropical South America and sea surface temperatures (SSTs) over the Pacific and Atlantic has been documented since the early twentieth century, the impact of each ocean on the timing and intensity of the wet season over tropical South America and the underlying mechanisms have remained unclear. Numerical experiments have been conducted using the National Center for Atmospheric Research Community Climate Model Version 3 to explore these impacts. The results suggest the following.1)Seasonality of SSTs in the tropical Pacific and Atlantic has an important influence on precipitation in the eastern Amazon during the equinox seasons. The eastern side of the Amazon is influenced both by the direct thermal circulation of the Atlantic intertropical convergence zone (ITCZ) and by Rossby waves. These processes are enhanced by the seasonal cycles of SSTs in the tropical Atlantic and Pacific. SSTs affect Amazon precipitation much less during the solstice seasons and in the western Amazon.2)The seasonality of SSTs in the Atlantic more strongly affects Amazon rainfall than does that of the Pacific. Without the former, austral spring in the eastern equatorial Amazon would be a wet season, rather than the observed dry season. As a consequence of the lag at that time of the southward seasonal migration of the Atlantic SSTs behind that of the insolation, the Atlantic ITCZ centers itself near 10°N, instead of at the equator, imposing subsidence and low-level anticyclonic flow over the eastern equatorial Amazon, thus drying the air above the planetary boundary layer and reducing the low-level moisture convergence. Consequently, convection in the eastern Amazon is suppressed despite strong surface heating.3)Seasonality of the SSTs in the tropical Pacific also tends to reduce precipitation in the eastern Amazon during both spring and fall. In spring, subsidence is enhanced not only through a zonal direct circulation, but also through Rossby waves propagating from the extratropical South Pacific to subtropical South America. This teleconnection strengthens the South Atlantic convergence zone (SACZ) and the Nordeste low, in both cases reducing precipitation in the eastern Amazon. A direct thermal response to the Pacific SSTs enhances lower-level divergence and reduces precipitation from the northern tropical Atlantic to the northeastern Amazon.

Nut Production in Bertholletia excelsa across a Logged Forest Mosaic: Implications for Multiple Forest Use

PubMed Central

Rockwell, Cara A.; Guariguata, Manuel R.; Menton, Mary; Arroyo Quispe, Eriks; Quaedvlieg, Julia; Warren-Thomas, Eleanor; Fernandez Silva, Harol; Jurado Rojas, Edwin Eduardo; Kohagura Arrunátegui, José Andrés Hideki; Meza Vega, Luis Alberto; Revilla Vera, Olivia; Valera Tito, Jonatan Frank; Villarroel Panduro, Betxy Tabita; Yucra Salas, Juan José

2015-01-01

Although many examples of multiple-use forest management may be found in tropical smallholder systems, few studies provide empirical support for the integration of selective timber harvesting with non-timber forest product (NTFP) extraction. Brazil nut (Bertholletia excelsa, Lecythidaceae) is one of the world’s most economically-important NTFP species extracted almost entirely from natural forests across the Amazon Basin. An obligate out-crosser, Brazil nut flowers are pollinated by large-bodied bees, a process resulting in a hard round fruit that takes up to 14 months to mature. As many smallholders turn to the financial security provided by timber, Brazil nut fruits are increasingly being harvested in logged forests. We tested the influence of tree and stand-level covariates (distance to nearest cut stump and local logging intensity) on total nut production at the individual tree level in five recently logged Brazil nut concessions covering about 4000 ha of forest in Madre de Dios, Peru. Our field team accompanied Brazil nut harvesters during the traditional harvest period (January-April 2012 and January-April 2013) in order to collect data on fruit production. Three hundred and ninety-nine (approximately 80%) of the 499 trees included in this study were at least 100 m from the nearest cut stump, suggesting that concessionaires avoid logging near adult Brazil nut trees. Yet even for those trees on the edge of logging gaps, distance to nearest cut stump and local logging intensity did not have a statistically significant influence on Brazil nut production at the applied logging intensities (typically 1–2 timber trees removed per ha). In one concession where at least 4 trees ha-1 were removed, however, the logging intensity covariate resulted in a marginally significant (0.09) P value, highlighting a potential risk for a drop in nut production at higher intensities. While we do not suggest that logging activities should be completely avoided in Brazil nut rich forests, when a buffer zone cannot be observed, low logging intensities should be implemented. The sustainability of this integrated management system will ultimately depend on a complex series of socioeconomic and ecological interactions. Yet we submit that our study provides an important initial step in understanding the compatibility of timber harvesting with a high value NTFP, potentially allowing for diversification of forest use strategies in Amazonian Perù. PMID:26271042

Nut Production in Bertholletia excelsa across a Logged Forest Mosaic: Implications for Multiple Forest Use.

PubMed

Rockwell, Cara A; Guariguata, Manuel R; Menton, Mary; Arroyo Quispe, Eriks; Quaedvlieg, Julia; Warren-Thomas, Eleanor; Fernandez Silva, Harol; Jurado Rojas, Edwin Eduardo; Kohagura Arrunátegui, José Andrés Hideki; Meza Vega, Luis Alberto; Revilla Vera, Olivia; Quenta Hancco, Roger; Valera Tito, Jonatan Frank; Villarroel Panduro, Betxy Tabita; Yucra Salas, Juan José

2015-01-01

Although many examples of multiple-use forest management may be found in tropical smallholder systems, few studies provide empirical support for the integration of selective timber harvesting with non-timber forest product (NTFP) extraction. Brazil nut (Bertholletia excelsa, Lecythidaceae) is one of the world's most economically-important NTFP species extracted almost entirely from natural forests across the Amazon Basin. An obligate out-crosser, Brazil nut flowers are pollinated by large-bodied bees, a process resulting in a hard round fruit that takes up to 14 months to mature. As many smallholders turn to the financial security provided by timber, Brazil nut fruits are increasingly being harvested in logged forests. We tested the influence of tree and stand-level covariates (distance to nearest cut stump and local logging intensity) on total nut production at the individual tree level in five recently logged Brazil nut concessions covering about 4000 ha of forest in Madre de Dios, Peru. Our field team accompanied Brazil nut harvesters during the traditional harvest period (January-April 2012 and January-April 2013) in order to collect data on fruit production. Three hundred and ninety-nine (approximately 80%) of the 499 trees included in this study were at least 100 m from the nearest cut stump, suggesting that concessionaires avoid logging near adult Brazil nut trees. Yet even for those trees on the edge of logging gaps, distance to nearest cut stump and local logging intensity did not have a statistically significant influence on Brazil nut production at the applied logging intensities (typically 1-2 timber trees removed per ha). In one concession where at least 4 trees ha-1 were removed, however, the logging intensity covariate resulted in a marginally significant (0.09) P value, highlighting a potential risk for a drop in nut production at higher intensities. While we do not suggest that logging activities should be completely avoided in Brazil nut rich forests, when a buffer zone cannot be observed, low logging intensities should be implemented. The sustainability of this integrated management system will ultimately depend on a complex series of socioeconomic and ecological interactions. Yet we submit that our study provides an important initial step in understanding the compatibility of timber harvesting with a high value NTFP, potentially allowing for diversification of forest use strategies in Amazonian Perù.

DoD Global Emerging Infections System Annual Report, Fiscal Year 2000

DTIC Science & Technology

2000-01-01

partners in Peru , Bolivia, and Suriname and was conducted largely under the supervision of a CDC officer assigned to NMRCD. Surveillance in the Amazon ...pyrimethamine on the north coast of Peru . In the Amazon basin, resistance to both chloroquine and sulfadoxine-pyrimethamine is noted in the central Amazon ...the north coast and in the Amazon region, respectively.As a result of this work, Peru now has better and more up-to-date information on antimalarial

Living Rivers: Importance of Andes-Amazon Connectivity and Consequences of Hydropower Development

NASA Astrophysics Data System (ADS)

Anderson, E.

2016-12-01

The inherent dynamism of rivers along elevational and longitudinal gradients underpins freshwater biodiversity, ecosystem function, and ecosystem services in the Andean-Amazon. While this region covers only a small part of the entire Amazon Basin, its influences on downstream ecology, biogeochemistry, and human wellbeing are disproportionate with its relative small size. Seasonal flow pulses from Andean rivers maintain habitat, signal migratory fishes, and export sediment, nutrients, and organic matter to distant ecosystems—like lowland Amazonia and the Atlantic coast of Brazil. Rivers are key transportation routes, and freshwater fisheries are a primary protein source for the >30 million people that inhabit the Amazon Basin. Numerous cultural traditions depend on free-flowing Andean rivers; examples include Kukama beliefs in the underwater cities of the Marañon River, where people who have drowned in rivers whose bodies are not recovered go to live, or the pre-dawn bathing rituals of the Peruvian Shawi, who gain energy and connect with ancestors in cold, fast-flowing Andean waters. Transformations in the Andean-Amazon landscape—in particular from dams—threaten to compromise flows critical for human and ecosystem wellbeing. Presently, at least 250 hydropower dams are in operation, under construction, or proposed for Andean-Amazon rivers. This presentation will discuss regional trends in hydropower development, quantify effects of existing and proposed dams on Andean-Amazon connectivity, and examine the social and cultural importance of free-flowing Andean-Amazon rivers.

[The health status of Yanomámi Indians: diagnosis from the Casa do Indio, Boa Vista, Roraima, 1987 - 1989].

PubMed

Pithan, O A; Confalonieri, U E; Morgado, A F

1991-01-01

The change in the morbidity profile of the Yanomámi Indians admitted to the Casa do Indio, at Boa Vista, Roraima, from January 1987 to August 1989, is reported. The most frequent diseases observed in 495 patients were malaria, acute respiratory infections, tuberculosis, severe under nutrition, and sexually transmitted diseases. Malaria was the main cause of death of 114 Indians throughout the period. A striking increase in hospital admissions was noted in the population from the villages which were in closer contact with gold miners. The global impact of the invasion of the Yanomámi territory by miners on the quality of life and health levels of the Yanomámi is discussed.

HPLC quantitation of kaurane diterpenes in Xylopia species.

PubMed

de Melo, A C; Cota, B B; de Oliveira, A B; Braga, F C

2001-01-01

Xylopia frutescens is a tree native to the Brazilian Amazon whose seeds are rich in kaurenoic acid, a diterpene that showed in vitro activity against Trypanosoma cruzi. Aiming to find out alternative sources for kaurenoic acid, the content of some kaurane diterpenes was evaluated in X. aromatica and X. brasiliensis, species occurring in the Cerrado area of Minas Gerais, and also in X. frutescens. A reversed phase HPLC isocratic method was developed and validated to perform the assays. Kaurenoic acid was found to be the most abundant diterpene within the analyzed species, with a 3.16+/-0.97% content in the seeds of X. frutescens, which also presented the highest amount of xylopic acid (1.09+/-0.33%). The highest concentration of 16-alpha-hydroxykauranoic acid (1.96+/-1.58%) was found in the stems of X. aromatica.

Shuttle radar images for geologic mapping in tropical rainforest

NASA Technical Reports Server (NTRS)

Ford, J. P.; Da Cunha, R.

1986-01-01

Images of forested low-relief terrain in the Amazon basin of Brazil, obtained with airborne imaging radar in the Radambrasil project, are compared with SIR-A and Landsat MSS band-7 images to evaluate their usefulness in constructing geologic maps. Sample images are shown, and it is found that Radam images are more useful in distinguishing drainage patterns and mapping the region distribution of stream channels due to their relatively low depression angles (less than 25 deg as opposed to 43-37 deg for SIR-A), but that SIR-A images give superior discrimination of alluvial forest, where trees stand in water, due to the higher reflectivity of branches and water at the SIR-A wavelength (23.5 cm as opposed to 3 cm for Radam). Alluvial forest is also identified by Landsat band 7.

Morton et al. Reply

NASA Technical Reports Server (NTRS)

Morton, Douglas C.; Nagol, Jyoteshwar; Carabajal, Claudia C.; Rosette, Jacqueline; Palace, Michael; Cook, Bruce D.; Vermote, Eric F.; Harding, David J.; North, Peter R. J.

2016-01-01

Multiple mechanisms could lead to up-regulation of dry-season photosynthesis in Amazon forests, including canopy phenology and illumination geometry. We specifically tested two mechanisms for phenology-driven changes in Amazon forests during dry-season months, and the combined evidence from passive optical and lidar satellite data was incompatible with large net changes in canopy leaf area or leaf reflectance suggested by previous studies. We therefore hypothesized that seasonal changes in the fraction of sunlit and shaded canopies, one aspect of bidirectional reflectance effects in Moderate Resolution Imaging Spectroradiometer (MODIS) data, could alter light availability for dry-season photosynthesis and the photosynthetic capacity of Amazon forests without large net changes in canopy composition. Subsequent work supports the hypothesis that seasonal changes in illumination geometry and diffuse light regulate light saturation in Amazon forests. These studies clarify the physical mechanisms that govern light availability in Amazon forests from seasonal variability in direct and diffuse illumination. Previously, in the debate over light limitation of Amazon forest productivity, seasonal changes in the distribution of light within complex Amazon forest canopies were confounded with dry-season increases in total incoming photosynthetically active radiation. In the accompanying Comment, Saleska et al. do not fully account for this confounding effect of forest structure on photosynthetic capacity.

The Indian Languages

ERIC Educational Resources Information Center

Strong, Augusta

1969-01-01

Appraisal of Boas'"Introduction to Handbook of American Indian Languages (1911), and Powell's "Indian Linguistic Famlies of America North of Mexico (1891), as reissued by University of Nebraska, Lincoln. (AF)

Mouths of the Amazon River, Brazil, South America

NASA Technical Reports Server (NTRS)

1992-01-01

In this view of the Amazon River Mouth (0.0, 51.0W), a large sediment plume can be seen expanding outward into the Atlantic Ocean. The sediment plume can be seen hugging the coast north of the delta as a result of the northwest flowing coastal Guyana Current. In recent years, the flow of the Amazon has become heavily laden with sediment as soil runoff from the denuded landscape of the interior enters the Amazon River (and other rivers) drainage system.

Epidemiology of Spotted Fever Group and Typhus Group Rickettsial Infection in the Amazon Basin of Peru

DTIC Science & Technology

2010-01-01

MediCine and Hyg1cne Epidemiology of Spotted Fever Group and Typhus Group Rickettsial Infection in the Amazon Basin of Peru Brett M. Forshey, Allison...approximately 4% of acute febrile episodes detected in Iquitos, a city located in the Amazon region of northeast- ern Peru , could be attributed to SFGR...2010 to 00-00-2010 4. TITLE AND SUBTITLE Epidemiology Of Spotted Fever Group And Typhus Group Rickettsial Infection In The Amazon Basin Of Peru 5a

DoD Global Emerging Infections System Annual Report, Fiscal Year 1999

DTIC Science & Technology

1999-01-01

findings provided the impetus to the government of Peru to change national drug policy regarding treatment of malaria in the Peruvian Amazon . As soon as...feasible, a 13 14 Malaria Emerges in the Amazon Basin of Peru (Department of Loreto) 1992-1997 During the last 10-15 years, malaria has emerged as a major...public health problem in the Amazon basin of South America. In Peru the total number of malaria cases reported annually from the Peruvian Amazon

Analysing Amazonian forest productivity using a new individual and trait-based model (TFS v.1)

NASA Astrophysics Data System (ADS)

Fyllas, N. M.; Gloor, E.; Mercado, L. M.; Sitch, S.; Quesada, C. A.; Domingues, T. F.; Galbraith, D. R.; Torre-Lezama, A.; Vilanova, E.; Ramírez-Angulo, H.; Higuchi, N.; Neill, D. A.; Silveira, M.; Ferreira, L.; Aymard C., G. A.; Malhi, Y.; Phillips, O. L.; Lloyd, J.

2014-07-01

Repeated long-term censuses have revealed large-scale spatial patterns in Amazon basin forest structure and dynamism, with some forests in the west of the basin having up to a twice as high rate of aboveground biomass production and tree recruitment as forests in the east. Possible causes for this variation could be the climatic and edaphic gradients across the basin and/or the spatial distribution of tree species composition. To help understand causes of this variation a new individual-based model of tropical forest growth, designed to take full advantage of the forest census data available from the Amazonian Forest Inventory Network (RAINFOR), has been developed. The model allows for within-stand variations in tree size distribution and key functional traits and between-stand differences in climate and soil physical and chemical properties. It runs at the stand level with four functional traits - leaf dry mass per area (Ma), leaf nitrogen (NL) and phosphorus (PL) content and wood density (DW) varying from tree to tree - in a way that replicates the observed continua found within each stand. We first applied the model to validate canopy-level water fluxes at three eddy covariance flux measurement sites. For all three sites the canopy-level water fluxes were adequately simulated. We then applied the model at seven plots, where intensive measurements of carbon allocation are available. Tree-by-tree multi-annual growth rates generally agreed well with observations for small trees, but with deviations identified for larger trees. At the stand level, simulations at 40 plots were used to explore the influence of climate and soil nutrient availability on the gross (ΠG) and net (ΠN) primary production rates as well as the carbon use efficiency (CU). Simulated ΠG, ΠN and CU were not associated with temperature. On the other hand, all three measures of stand level productivity were positively related to both mean annual precipitation and soil nutrient status. Sensitivity studies showed a clear importance of an accurate parameterisation of within- and between-stand trait variability on the fidelity of model predictions. For example, when functional tree diversity was not included in the model (i.e. with just a single plant functional type with mean basin-wide trait values) the predictive ability of the model was reduced. This was also the case when basin-wide (as opposed to site-specific) trait distributions were applied within each stand. We conclude that models of tropical forest carbon, energy and water cycling should strive to accurately represent observed variations in functionally important traits across the range of relevant scales.

Act No. 24994 of 19 January 1989. Basic Law on the Rural Development of the Peruvian Amazon Region.

PubMed

1989-01-01

This Act sets forth the government's policy on rural development of the Peruvian Amazon region. Major objectives of the Act include the promotion of new rural settlements in the Amazon region, the promotion of migration from the Andes to the Amazon region, and the stimulation of agriculture, livestock, and forestry activities in the Amazon region. The following are the means that the government will use, among others, to attain these goals: 1) the development of Population Displacement Programmes, which will give individual persons and families economic and logistic support in moving; 2) the establishment of Civic Colonizing Services, temporary mobile units, which will offer settlers health services, education services, technical assistance with respect to agriculture and livestock, and promotional credits; 3) the creation of the Council for Amazon River Transport to coordinate and recommend activities to improve river transport; 4) the granting to settlers of land, free education for their children, medical care, technical training and assistance with respect to agriculture, and a supply of seeds; 5) the exemption of certain investors from payment of income taxes; and 6) the granting of a wide range of incentives for agricultural production. The Act also creates a Council for Planning and Development in the Amazon Region to draw up and approve a Plan for the Development of the Amazon Region. It calls for the rational use of the natural resources of the Amazon Region in the framework of preserving the ecosystem and preventing its ruin and delegates to the regional governments the authority to enter into contracts on the use of forest materials and to undertake reforestation programs. Finally, the Act provides various guarantees for the native population, including guarantees with respect to land and preservation of ethnic and social identity.

Tropical North Atlantic ocean-atmosphere interactions synchronize forest carbon losses from hurricanes and Amazon fires

NASA Astrophysics Data System (ADS)

Chen, Yang; Randerson, James T.; Morton, Douglas C.

2015-08-01

We describe a climate mode synchronizing forest carbon losses from North and South America by analyzing time series of tropical North Atlantic sea surface temperatures (SSTs), landfall hurricanes and tropical storms, and Amazon fires during 1995-2013. Years with anomalously high tropical North Atlantic SSTs during March-June were often followed by a more active hurricane season and a larger number of satellite-detected fires in the southern Amazon during June-November. The relationship between North Atlantic tropical cyclones and southern Amazon fires (r = 0.61, p < 0.003) was stronger than links between SSTs and either cyclones or fires alone, suggesting that fires and tropical cyclones were directly coupled to the same underlying atmospheric dynamics governing tropical moisture redistribution. These relationships help explain why seasonal outlook forecasts for hurricanes and Amazon fires both failed in 2013 and may enable the design of improved early warning systems for drought and fire in Amazon forests.

Classification of Amazonian rosewood essential oil by Raman spectroscopy and PLS-DA with reliability estimation.

PubMed

Almeida, Mariana R; Fidelis, Carlos H V; Barata, Lauro E S; Poppi, Ronei J

2013-12-15

The Amazon tree Aniba rosaeodora Ducke (rosewood) provides an essential oil valuable for the perfume industry, but after decades of predatory extraction it is at risk of extinction. The extraction of the essential oil from wood implies the cutting of the tree, and then the study of oil extracted from the leaves is important as a sustainable alternative. The goal of this study was to test the applicability of Raman spectroscopy and Partial Least Square Discriminant Analysis (PLS-DA) as means to classify the essential oil extracted from different parties (wood, leaves and branches) of the Brazilian tree A. rosaeodora. For the development of classification models, the Raman spectra were split into two sets: training and test. The value of the limit that separates the classes was calculated based on the distribution of samples of training. This value was calculated in a manner that the classes are divided with a lower probability of incorrect classification for future estimates. The best model presented sensitivity and specificity of 100%, predictive accuracy and efficiency of 100%. These results give an overall vision of the behavior of the model, but do not give information about individual samples; in this case, the confidence interval for each sample of classification was also calculated using the resampling bootstrap technique. The methodology developed have the potential to be an alternative for standard procedures used for oil analysis and it can be employed as screening method, since it is fast, non-destructive and robust. © 2013 Elsevier B.V. All rights reserved.

Drought responses of flood-tolerant trees in Amazonian floodplains

PubMed Central

Parolin, Pia; Lucas, Christine; Piedade, Maria Teresa F.; Wittmann, Florian

2010-01-01

Background Flood-tolerant tree species of the Amazonian floodplain forests are subjected to an annual dry period of variable severity imposed when low river-water levels coincide with minimal precipitation. Although the responses of these species to flooding have been examined extensively, their responses to drought, in terms of phenology, growth and physiology, have been neglected hitherto, although some information is found in publications that focus on flooding. Scope The present review examines the dry phase of the annual flooding cycle. It consolidates existing knowledge regarding responses to drought among adult trees and seedlings of many Amazonian floodplain species. Main Findings Flood-tolerant species display variable physiological responses to dry periods and drought that indicate desiccation avoidance, such as reduced photosynthetic activity and reduced root respiration. However, tolerance and avoidance strategies for drought vary markedly among species. Drought can substantially decrease growth, biomass and photosynthetic activity among seedlings in field and laboratory studies. When compared with the responses to flooding, drought can impose higher seedling mortality and slower growth rates, especially among evergreen species. Results indicate that tolerance and avoidance strategies for drought vary markedly between species. Both seedling recruitment and photosynthetic activity are affected by drought, Conclusions For many species, the effects of drought can be as important as flooding for survival and growth, particularly at the seedling phase of establishment, ultimately influencing species composition. In the context of climate change and predicted decreases in precipitation in the Amazon Basin, the effects of drought on plant physiology and species distribution in tropical floodplain forest ecosystems should not be overlooked. PMID:19880423

Integrating Stand and Soil Properties to Understand Foliar Nutrient Dynamics during Forest Succession Following Slash-and-Burn Agriculture in the Bolivian Amazon

PubMed Central

Broadbent, Eben N.; Almeyda Zambrano, Angélica M.; Asner, Gregory P.; Soriano, Marlene; Field, Christopher B.; de Souza, Harrison Ramos; Peña-Claros, Marielos; Adams, Rachel I.; Dirzo, Rodolfo; Giles, Larry

2014-01-01

Secondary forests cover large areas of the tropics and play an important role in the global carbon cycle. During secondary forest succession, simultaneous changes occur among stand structural attributes, soil properties, and species composition. Most studies classify tree species into categories based on their regeneration requirements. We use a high-resolution secondary forest chronosequence to assign trees to a continuous gradient in species successional status assigned according to their distribution across the chronosequence. Species successional status, not stand age or differences in stand structure or soil properties, was found to be the best predictor of leaf trait variation. Foliar δ13C had a significant positive relationship with species successional status, indicating changes in foliar physiology related to growth and competitive strategy, but was not correlated with stand age, whereas soil δ13C dynamics were largely constrained by plant species composition. Foliar δ15N had a significant negative correlation with both stand age and species successional status, – most likely resulting from a large initial biomass-burning enrichment in soil 15N and 13C and not closure of the nitrogen cycle. Foliar %C was neither correlated with stand age nor species successional status but was found to display significant phylogenetic signal. Results from this study are relevant to understanding the dynamics of tree species growth and competition during forest succession and highlight possibilities of, and potentially confounding signals affecting, the utility of leaf traits to understand community and species dynamics during secondary forest succession. PMID:24516525

Integrating stand and soil properties to understand foliar nutrient dynamics during forest succession following slash-and-burn agriculture in the Bolivian Amazon.

PubMed

Broadbent, Eben N; Almeyda Zambrano, Angélica M; Asner, Gregory P; Soriano, Marlene; Field, Christopher B; de Souza, Harrison Ramos; Peña-Claros, Marielos; Adams, Rachel I; Dirzo, Rodolfo; Giles, Larry

2014-01-01

Secondary forests cover large areas of the tropics and play an important role in the global carbon cycle. During secondary forest succession, simultaneous changes occur among stand structural attributes, soil properties, and species composition. Most studies classify tree species into categories based on their regeneration requirements. We use a high-resolution secondary forest chronosequence to assign trees to a continuous gradient in species successional status assigned according to their distribution across the chronosequence. Species successional status, not stand age or differences in stand structure or soil properties, was found to be the best predictor of leaf trait variation. Foliar δ(13)C had a significant positive relationship with species successional status, indicating changes in foliar physiology related to growth and competitive strategy, but was not correlated with stand age, whereas soil δ(13)C dynamics were largely constrained by plant species composition. Foliar δ(15)N had a significant negative correlation with both stand age and species successional status, - most likely resulting from a large initial biomass-burning enrichment in soil (15)N and (13)C and not closure of the nitrogen cycle. Foliar %C was neither correlated with stand age nor species successional status but was found to display significant phylogenetic signal. Results from this study are relevant to understanding the dynamics of tree species growth and competition during forest succession and highlight possibilities of, and potentially confounding signals affecting, the utility of leaf traits to understand community and species dynamics during secondary forest succession.

Mapping Upper Amazon Palm Swamps with Spaceborne L-band Synthetic Aperture Radar

NASA Astrophysics Data System (ADS)

Pinto, N.; McDonald, K. C.; Podest, E.; Schroeder, R.; Zimmermann, R.; Horna, V.

2010-12-01

Palm swamp ecosystems are widespread in the Amazon basin, forming where seasonal flooding is moderate and surface inundation persists. Recent studies suggest that palm swamps have a disproportional role on tropical biogeochemistry: the combination of persistently saturated soils, warm temperatures, and low oxygen soils can support significant land-atmosphere methane flux. Potential impacts of climate change on these ecosystems include changes in temperature and precipitation regimes that influence primary productivity and flood extent significantly, potentially reversing net land-atmosphere carbon exchanges regionally. Data acquired from Earth-orbiting satellites provides the opportunity to characterize vegetation structure and monitor surface inundation independently of cloud cover. Building on efforts under our NASA MEaSUREs project for assembly of a global-scale Earth System Data Record (ESDR) of inundated wetlands, we develop and evaluate a systematic approach to map the distribution and composition of palm swamps in the upper Amazon using data sets from JAXA’s Advanced Land Observing Satellite (ALOS) Phased Array L-Band SAR (PALSAR). Our input dataset consists of HH backscatter images acquired in 2007 and 2009. Ground measurements for training were obtained from a study site near Loreto, Peru (4.43S 75.34W) containing the palm species Mauritia flexuosa. The ALOS PALSAR images are first averaged temporally and spatially. We then develop ancillary data layers of flood extent, distance from open water, and SAR image texture. The PALSAR data and derived ancillary layers are combined with MODIS Vegetation Indices and SRTM elevation and input in a classification framework. Since palm swamps are found in persistently flooded areas, we evaluate the potential of identifying and mapping these ecosystems using multi-temporal SAR-based flood extent maps. We conclude by comparing the performance between a decision-tree supervised vs. unsupervised approach and by quantifying model accuracy on a second site in Puerto Maldonado (12.38S 70.45W). This work has been undertaken in part within the framework of the JAXA ALOS Kyoto & Carbon Initiative. ALOS PALSAR data have been provided by JAXA EORC. This work was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under contract with the National Aeronautics and Space Administration.

Dynamics of floodplain lakes in the Upper Amazon Basin during the late Holocene

NASA Astrophysics Data System (ADS)

Quintana-Cobo, Isabel; Moreira-Turcq, Patricia; Cordeiro, Renato C.; Aniceto, Keila; Crave, Alain; Fraizy, Pascal; Moreira, Luciane S.; Duarte Contrera, Julia Maria de Aguiar; Turcq, Bruno

2018-01-01

To better understand the impact of channel migration processes and climate change on the depositional dynamics of floodplain lakes of the upper Amazon Basin during the late Holocene, we collected three sediment cores from floodplain lakes of the Ucayali River and one from the Marañón River. The cores were dated with 14C, radiographed and described. Bulk density, grain size analysis and total organic carbon (TOC) were determined. The results show that sedimentation in Ucayali floodplain lakes was marked by variations during the late Holocene, with periods of intense hydrodynamic energy and abrupt accumulations, a gap in the record between about 2870 and 690 cal yr BP, and periods of more lacustrine conditions. These changes in sedimentation were associated with variations in the river's influence related to changes in its meandering course (2870 cal yr BP) and a period of severe flooding between 3550 and 3000 cal yr BP. Lake Lagarto on the Marañón River floodplain exhibits a different sedimentary environment of low hydrodynamics with palm trees and macrophytes. Apparently, the lake has not experienced intense migration processes during the last 600 cal yr BP (base of the core). Nevertheless, the river sediment flux to the lake was important from 600 to 500 cal yr BP, although it decreased thereafter until the present. This decrease in the mineral accumulation rate indicates a decrease in river discharge since 500 cal yr BP, which coincides with precipitation records from the central Andes. In the upper part of the three Ucayali floodplain cores, a 30- to 250-cm-thick layer of reworked sediments has been deposited since 1950 AD (post-bomb). In Lake Carmen, this layer is associated with invasion of the lake by the levee of a migrating meander of the Ucayali. In Lakes Hubos and La Moringa, however, the river is still far away and the deposition must be interpreted as the result of extreme flooding. The beginning of the Ucayali meander migration is dated back to 2000 AD, suggesting that these extreme floods could be very recent and linked to hydrologic extremes registered instrumentally in the Amazon Basin.

Biomass Burning and Natural Emissions in the Amazon Rainforest: Impact on the Oxidative Capacity of the Atmosphere

NASA Astrophysics Data System (ADS)

dos Santos, F. C.; Guenther, A. B.; Longo, K.; Freitas, S. R.; Moreira, D. S.; Flávio, L.; Braz, R.; Brito, J.; Oram, D.; Forster, G.; Lee, J. D.; Bauguitte, S.

2015-12-01

Terrestrial vegetation, especially tropical forests, releases large amounts of biogenic volatile organic compounds (BVOC) into the atmosphere. The global emissions of BVOC (~1000 Tg C/year) are dominant in relation to anthropogenic volatile organic compounds (~100 Tg C/year), with biomass burning contributing close to 10 - 50 Tg C/year. Tropical trees cover about 18% of the global land surface but are estimated to be responsible for approximately 80% of terpenoid and 50% of other BVOCs emissions. Considering the importance of these emissions, the SAMBBA (South American Biomass Burning Analysis) experiment, which occurred during the dry season (September 2012) in the Amazon Rainforest, provided information about the chemical composition of the atmosphere through measurements on the aircraft FAAM BAE-146. Although primarily focused on biomass burning flights, the SAMBBA project carried out other flights providing indirect oxidative capacity data in different environments: natural emission dominated flights and biomass burning flights with fresh plumes (< 2 hours) and aged plumes (> 2 hours). Calculation of the [MVK+MACR]/[Isoprene] ratio enabled investigation of the impact of biomass burning on surface oxidation in comparison to the natural emission flights. During the morning (altitude < 500m), the [MVK+MACR]/[Isoprene] values for natural emission flights (1.0±0.4), fresh plume (1.9±0.6) and aged plume (1.4±0.6) suggest that biomass burning enhances BVOC oxidation in relation to the lifetime of the air mass. This study aims to improve the knowledge about the oxidative capacity of the atmosphere, which depends not only on chemical composition, but also other factors like the history of the air mass trajectories influencing the availability of these compounds, the NOx dependence of isoprene oxidation and whether the chemistry is dominated by OH or O3. A synergistic approach integrating observation and modeling, using 3D numerical model of chemical transport (CCATT-BRAMS) coupled with a natural emission model (MEGAN) has been applied to study the BVOC in the Amazon rainforest. The SAMBBA experiment provided a valuable database that is being included into a numerical model of air quality, developing a numerical model that incorporates the understanding needed to represent the observations.

Global Conservation Significance of Ecuador's Yasuní National Park

PubMed Central

Bass, Margot S.; Finer, Matt; Jenkins, Clinton N.; Kreft, Holger; Cisneros-Heredia, Diego F.; McCracken, Shawn F.; Pitman, Nigel C. A.; English, Peter H.; Swing, Kelly; Villa, Gorky; Di Fiore, Anthony; Voigt, Christian C.; Kunz, Thomas H.

2010-01-01

Background The threats facing Ecuador's Yasuní National Park are emblematic of those confronting the greater western Amazon, one of the world's last high-biodiversity wilderness areas. Notably, the country's second largest untapped oil reserves—called “ITT”—lie beneath an intact, remote section of the park. The conservation significance of Yasuní may weigh heavily in upcoming state-level and international decisions, including whether to develop the oil or invest in alternatives. Methodology/Principal Findings We conducted the first comprehensive synthesis of biodiversity data for Yasuní. Mapping amphibian, bird, mammal, and plant distributions, we found eastern Ecuador and northern Peru to be the only regions in South America where species richness centers for all four taxonomic groups overlap. This quadruple richness center has only one viable strict protected area (IUCN levels I–IV): Yasuní. The park covers just 14% of the quadruple richness center's area, whereas active or proposed oil concessions cover 79%. Using field inventory data, we compared Yasuní's local (alpha) and landscape (gamma) diversity to other sites, in the western Amazon and globally. These analyses further suggest that Yasuní is among the most biodiverse places on Earth, with apparent world richness records for amphibians, reptiles, bats, and trees. Yasuní also protects a considerable number of threatened species and regional endemics. Conclusions/Significance Yasuní has outstanding global conservation significance due to its extraordinary biodiversity and potential to sustain this biodiversity in the long term because of its 1) large size and wilderness character, 2) intact large-vertebrate assemblage, 3) IUCN level-II protection status in a region lacking other strict protected areas, and 4) likelihood of maintaining wet, rainforest conditions while anticipated climate change-induced drought intensifies in the eastern Amazon. However, further oil development in Yasuní jeopardizes its conservation values. These findings form the scientific basis for policy recommendations, including stopping any new oil activities and road construction in Yasuní and creating areas off-limits to large-scale development in adjacent northern Peru. PMID:20098736

Towards Monitoring Biodiversity in Amazonian Forests: How Regular Samples Capture Meso-Scale Altitudinal Variation in 25 km2 Plots

PubMed Central

Norris, Darren; Fortin, Marie-Josée; Magnusson, William E.

2014-01-01

Background Ecological monitoring and sampling optima are context and location specific. Novel applications (e.g. biodiversity monitoring for environmental service payments) call for renewed efforts to establish reliable and robust monitoring in biodiversity rich areas. As there is little information on the distribution of biodiversity across the Amazon basin, we used altitude as a proxy for biological variables to test whether meso-scale variation can be adequately represented by different sample sizes in a standardized, regular-coverage sampling arrangement. Methodology/Principal Findings We used Shuttle-Radar-Topography-Mission digital elevation values to evaluate if the regular sampling arrangement in standard RAPELD (rapid assessments (“RAP”) over the long-term (LTER [“PELD” in Portuguese])) grids captured patters in meso-scale spatial variation. The adequacy of different sample sizes (n = 4 to 120) were examined within 32,325 km2/3,232,500 ha (1293×25 km2 sample areas) distributed across the legal Brazilian Amazon. Kolmogorov-Smirnov-tests, correlation and root-mean-square-error were used to measure sample representativeness, similarity and accuracy respectively. Trends and thresholds of these responses in relation to sample size and standard-deviation were modeled using Generalized-Additive-Models and conditional-inference-trees respectively. We found that a regular arrangement of 30 samples captured the distribution of altitude values within these areas. Sample size was more important than sample standard deviation for representativeness and similarity. In contrast, accuracy was more strongly influenced by sample standard deviation. Additionally, analysis of spatially interpolated data showed that spatial patterns in altitude were also recovered within areas using a regular arrangement of 30 samples. Conclusions/Significance Our findings show that the logistically feasible sample used in the RAPELD system successfully recovers meso-scale altitudinal patterns. This suggests that the sample size and regular arrangement may also be generally appropriate for quantifying spatial patterns in biodiversity at similar scales across at least 90% (≈5 million km2) of the Brazilian Amazon. PMID:25170894

Is the Karyotype of Neotropical Boid Snakes Really Conserved? Cytotaxonomy, Chromosomal Rearrangements and Karyotype Organization in the Boidae Family

PubMed Central

Viana, Patrik F.; Ribeiro, Leila B.; Souza, George Myller; Chalkidis, Hipócrates de Menezes; Gross, Maria Claudia; Feldberg, Eliana

2016-01-01

Boids are primitive snakes from a basal lineage that is widely distributed in Neotropical region. Many of these species are both morphologically and biogeographically divergent, and the relationship among some species remains uncertain even with evolutionary and phylogenetic studies being proposed for the group. For a better understanding of the evolutionary relationship between these snakes, we cytogenetically analysed 7 species and 3 subspecies of Neotropical snakes from the Boidae family using different chromosomal markers. The karyotypes of Boa constrictor occidentalis, Corallus hortulanus, Eunectes notaeus, Epicrates cenchria and Epicrates assisi are presented here for the first time with the redescriptions of the karyotypes of Boa constrictor constrictor, B. c. amarali, Eunectes murinus and Epicrates crassus. The three subspecies of Boa, two species of Eunectes and three species of Epicrates exhibit 2n = 36 chromosomes. In contrast, C. hortulanus presented a totally different karyotype composition for the Boidae family, showing 2n = 40 chromosomes with a greater number of macrochromosomes. Furthermore, chromosomal mapping of telomeric sequences revealed the presence of interstitial telomeric sites (ITSs) on many chromosomes in addition to the terminal markings on all chromosomes of all taxa analysed, with the exception of E. notaeus. Thus, we demonstrate that the karyotypes of these snakes are not as highly conserved as previously thought. Moreover, we provide an overview of the current cytotaxonomy of the group. PMID:27494409

Is the Karyotype of Neotropical Boid Snakes Really Conserved? Cytotaxonomy, Chromosomal Rearrangements and Karyotype Organization in the Boidae Family.

PubMed

Viana, Patrik F; Ribeiro, Leila B; Souza, George Myller; Chalkidis, Hipócrates de Menezes; Gross, Maria Claudia; Feldberg, Eliana

2016-01-01

Boids are primitive snakes from a basal lineage that is widely distributed in Neotropical region. Many of these species are both morphologically and biogeographically divergent, and the relationship among some species remains uncertain even with evolutionary and phylogenetic studies being proposed for the group. For a better understanding of the evolutionary relationship between these snakes, we cytogenetically analysed 7 species and 3 subspecies of Neotropical snakes from the Boidae family using different chromosomal markers. The karyotypes of Boa constrictor occidentalis, Corallus hortulanus, Eunectes notaeus, Epicrates cenchria and Epicrates assisi are presented here for the first time with the redescriptions of the karyotypes of Boa constrictor constrictor, B. c. amarali, Eunectes murinus and Epicrates crassus. The three subspecies of Boa, two species of Eunectes and three species of Epicrates exhibit 2n = 36 chromosomes. In contrast, C. hortulanus presented a totally different karyotype composition for the Boidae family, showing 2n = 40 chromosomes with a greater number of macrochromosomes. Furthermore, chromosomal mapping of telomeric sequences revealed the presence of interstitial telomeric sites (ITSs) on many chromosomes in addition to the terminal markings on all chromosomes of all taxa analysed, with the exception of E. notaeus. Thus, we demonstrate that the karyotypes of these snakes are not as highly conserved as previously thought. Moreover, we provide an overview of the current cytotaxonomy of the group.

Automated global structure extraction for effective local building block processing in XCS.

PubMed

Butz, Martin V; Pelikan, Martin; Llorà, Xavier; Goldberg, David E

2006-01-01

Learning Classifier Systems (LCSs), such as the accuracy-based XCS, evolve distributed problem solutions represented by a population of rules. During evolution, features are specialized, propagated, and recombined to provide increasingly accurate subsolutions. Recently, it was shown that, as in conventional genetic algorithms (GAs), some problems require efficient processing of subsets of features to find problem solutions efficiently. In such problems, standard variation operators of genetic and evolutionary algorithms used in LCSs suffer from potential disruption of groups of interacting features, resulting in poor performance. This paper introduces efficient crossover operators to XCS by incorporating techniques derived from competent GAs: the extended compact GA (ECGA) and the Bayesian optimization algorithm (BOA). Instead of simple crossover operators such as uniform crossover or one-point crossover, ECGA or BOA-derived mechanisms are used to build a probabilistic model of the global population and to generate offspring classifiers locally using the model. Several offspring generation variations are introduced and evaluated. The results show that it is possible to achieve performance similar to runs with an informed crossover operator that is specifically designed to yield ideal problem-dependent exploration, exploiting provided problem structure information. Thus, we create the first competent LCSs, XCS/ECGA and XCS/BOA, that detect dependency structures online and propagate corresponding lower-level dependency structures effectively without any information about these structures given in advance.

Effectiveness of a school-based intervention on physical activity for high school students in Brazil: the Saude na Boa project.

PubMed

de Barros, Mauro Virgílio Gomes; Nahas, Markus Vinicius; Hallal, Pedro Curi; de Farias Júnior, José Cazuza; Florindo, Alex Antônio; Honda de Barros, Simone Storino

2009-03-01

We evaluated the effectiveness of a school-based intervention on the promotion of physical activity among high school students in Brazil: the Saude na Boa project. A school-based, randomized trial was carried out in 2 Brazilian cities: Recife (northeast) and Florianopolis (south). Ten schools in each city were matched by size and location, and randomized into intervention or control groups. The intervention included environmental/organizational changes, physical activity education, and personnel training and engagement. Students age 15 to 24 years were evaluated at baseline and 9 months later (end of school year). Although similar at baseline, after the intervention, the control group reported significantly fewer d/wk accumulating 60 minutes+ moderate-to-vigorous physical activity (MVPA) in comparison with the intervention group (2.6 versus 3.3, P<.001). The prevalence of inactivity (0 days per week) rose in the control and decreased in the intervention group. The odds ratio for engaging at least once per week in physical activity associated with the intervention was 1.83 (95% CI=1.24-2.71) in the unadjusted analysis and 1.88 (95% CI=1.27-2.79) after controlling for gender. The Saude na Boa intervention was effective at reducing the prevalence of physical inactivity. The possibility of expanding the intervention to other locations should be considered.

Survival of Seasonal Flooding in the Amazon by the Terrestrial Insect Conotrachelus dubiae O'Brien & Couturier (Coleoptera: Curculionidae), a Pest of the Camu-Camu Plant, Myrciaria dubia (Myrtaceae).

PubMed

Delgado, C; Couturier, G; Fine, P V A

2014-08-01

The weevil Conotrachelus dubiae O'Brien & Couturier (Coleoptera: Curculionidae) is a pest of an economically important Amazonian fruit tree Myrciaria dubia (Myrtaceae). This tree grows in seasonally flooded environments, and how weevil larvae survive flooding has not been studied. From December 2004 to May 2009, five experiments were conducted in natural conditions and in the laboratory, with the aim of understanding the mechanisms that allow the survival of C. dubiae larvae in seasonal floods in Amazonia. The larvae of C. dubiae were kept under water for over 93 days. Older instars exposed to periodic circulation of water survived better than younger instars in addition to all larvae that were kept continuously under uncirculated water. Individuals that were collected from plots of M. dubia located in flooded soils and non-flooded soils did not exhibit statistically significant differences in their levels of survival indicating that the variation in survival of flooding events is due to phenotypic plasticity of the species and not to local adaptation by the populations in different environments. We speculate that larvae can survive floods without major physiological changes as larvae appear to obtain oxygen from water by cutaneous diffusion, assisted by caudal movements.

Environmental filtering of eudicot lineages underlies phylogenetic clustering in tropical South American flooded forests.

PubMed

Aldana, Ana M; Carlucci, Marcos B; Fine, Paul V A; Stevenson, Pablo R

2017-02-01

The phylogenetic community assembly approach has been used to elucidate the role of ecological and historical processes in shaping tropical tree communities. Recent studies have shown that stressful environments, such as seasonally dry, white-sand and flooded forests tend to be phylogenetically clustered, arguing for niche conservatism as the main driver for this pattern. Very few studies have attempted to identify the lineages that contribute to such assembly patterns. We aimed to improve our understanding of the assembly of flooded forest tree communities in Northern South America by asking the following questions: are seasonally flooded forests phylogenetically clustered? If so, which angiosperm lineages are over-represented in seasonally flooded forests? To assess our hypotheses, we investigated seasonally flooded and terra firme forests from the Magdalena, Orinoco and Amazon Basins, in Colombia. Our results show that, regardless of the river basin in which they are located, seasonally flooded forests of Northern South America tend to be phylogenetically clustered, which means that the more abundant taxa in these forests are more closely related to each other than expected by chance. Based on our alpha and beta phylodiversity analyses we interpret that eudicots are more likely to adapt to extreme environments such as seasonally flooded forests, which indicates the importance of environmental filtering in the assembly of the Neotropical flora.

Enhancement of wound healing by the alkaloid taspine defining mechanism of action.

PubMed

Porras-Reyes, B H; Lewis, W H; Roman, J; Simchowitz, L; Mustoe, T A

1993-05-01

Taspine (mol wt 369,000) is an alkaloid extracted from trees of Croton (family Euphorbiaceae) of the western Amazon region that has been used by natives and others as a vulnerary agent. Taspine was purified from tree sap to test its healing properties using different topical concentrations in the paired rat surgical incision model. Wound tensile strength and histology were evaluated. Samples treated with 250 micrograms, but not those treated with 50 micrograms or 10 micrograms, had significant higher values for MBS than paired controls (26%, P < 0.005, and 30%, P < 0.001, by Days 5 and 7, respectively). Taspine did not modify MBS at Day 12. Sample treated with 250 micrograms had significantly greater mononuclear cellular infiltration at Days 5 and 7 but not at Day 12. To better understand the effect of taspine as an enhancer of wound healing, we conducted in vitro studies in cell cultures. Taspine stimulated chemotaxis for fibroblasts. Taspine did not have an effect on specific assays for macrophage chemotaxis, neutrophil activation, fibroblast proliferation, or matrix assembly. Taken together, the data suggest that taspine promotes early phases of wound healing in a dose-dependent manner with no substantial modification thereafter. Its mechanism of action is probably related to its chemotactic properties on fibroblasts and is not mediated by changes in extracellular matrix.

Seroprevalence of Toxoplasma gondii in free-living Amazon river dolphins (Inia geoffrensis) from central Amazon, Brazil

USDA-ARS?s Scientific Manuscript database

Toxoplasma gondii is an important pathogen in aquatic mammals and its presence in these animals may indicate water contamination of aquatic environment by oocysts. Serum samples from 95 dolphins from free-living Amazon River dolphins (Inia geoffrensis) from Sustainable Development Reserve Mamirauá (...

Seroprevalence of Toxoplasma gondii in free-living amazon river dolphins (Inia geoffrensis) from central Amazon, Brazil

USDA-ARS?s Scientific Manuscript database

Toxoplasma gondii is an important pathogen in aquatic mammals and its presence in these animals may indicate water contamination of aquatic environment by oocysts. Serum samples from 95 dolphins from free-living Amazon River dolphins (Inia geoffrensis) from Sustainable Development Reserve Mamirauá (...

Amazon River investigations, reconnaissance measurements of July 1963

USGS Publications Warehouse

Oltman, Roy Edwin; Sternberg, H. O'R.; Ames, F.C.; Davis, L.C.

1964-01-01

The first measurements of the flow of the Amazon River were made in July 1963 as a joint project of the University of Brazil, the Brazilian Navy, and the U.S. Geological Survey. The discharge of the Amazon River at Obidos was 7,640,000 cfs at an annual flood stage somewhat lower than the average. For comparison the maximum known discharge of the Mississippi River at Vicksburg is about 2,300,000 cfs. Dissolved-solids concentrations and sediment loads of the Amazon River and of several major tributaries were found to be low.

Spectrometry of Pasture Condition and Biogeochemistry in the Central Amazon

NASA Technical Reports Server (NTRS)

Asner, Gregory P.; Townsend, Alan R.; Bustamante, Mercedes M. C.

1999-01-01

Regional analyses of Amazon cattle pasture biogeochemistry are difficult due to the complexity of human, edaphic, biotic and climatic factors and persistent cloud cover in satellite observations. We developed a method to estimate key biophysical properties of Amazon pastures using hyperspectral reflectance data and photon transport inverse modeling. Remote estimates of live and senescent biomass were strongly correlated with plant-available forms of soil phosphorus and calcium. These results provide a basis for monitoring pasture condition and biogeochemistry in the Amazon Basin using spaceborne hyperspectral sensors.

Surveillance, health promotion and control of Chagas disease in the Amazon Region - Medical attention in the Brazilian Amazon Region: a proposal

PubMed Central

Coura, José Rodrigues; Junqueira, Angela CV

2015-01-01

We refer to Oswaldo Cruz's reports dating from 1913 about the necessities of a healthcare system for the Brazilian Amazon Region and about the journey of Carlos Chagas to 27 locations in this region and the measures that would need to be adopted. We discuss the risks of endemicity of Chagas disease in the Amazon Region. We recommend that epidemiological surveillance of Chagas disease in the Brazilian Amazon Region and Pan-Amazon region should be implemented through continuous monitoring of the human population that lives in the area, their housing, the environment and the presence of triatomines. The monitoring should be performed with periodic seroepidemiological surveys, semi-annual visits to homes by health agents and the training of malaria microscopists and healthcare technicians to identify Trypanosoma cruzi from patients' samples and T. cruzi infection rates among the triatomines caught. We recommend health promotion and control of Chagas disease through public health policies, especially through sanitary education regarding the risk factors for Chagas disease. Finally, we propose a healthcare system through base hospitals, intermediate-level units in the areas of the Brazilian Amazon Region and air transportation, considering the distances to be covered for medical care. PMID:26560976

Separating the Effects of Tropical Atlantic and Pacific SST-driven Climate Variability on Amazon Carbon Exchange

NASA Astrophysics Data System (ADS)

Liptak, J.; Keppel-Aleks, G.

2016-12-01

Amazon forests store an estimated 25% percent of global terrestrial carbon per year1, 2, but the responses of Amazon carbon uptake to climate change is highly uncertain. One source of this uncertainty is tropical sea surface temperature variability driven by teleconnections. El Nino-Southern Oscillation (ENSO) is a key driver of year-to-year Amazon carbon exchange, with associated temperature and precipitation changes favoring net carbon storage in La Nina years, and net carbon release during El Nino years3. To determine how Amazon climate and terrestrial carbon fluxes react to ENSO alone and in concert with other SST-driven teleconnections such as the Atlantic Multidecadal Oscillation (AMO), we force the atmosphere (CAM5) and land (CLM4) components of the CESM(BGC) with prescribed monthly SSTs over the period 1950—2014 in a Historical control simulation. We then run an experiment (PAC) with time-varying SSTs applied only to the tropical equatorial Pacific Ocean, and repeating SST seasonal cycle climatologies elsewhere. Limiting SST variability to the equatorial Pacific indicates that other processes enhance ENSO-driven Amazon climate anomalies. Compared to the Historical control simulation, warming, drying and terrestrial carbon loss over the Amazon during El Nino periods are lower in the PAC simulation, especially prior to 1990 during the cool phase of the AMO. Cooling, moistening, and net carbon uptake during La Nina periods are also reduced in the PAC simulation, but differences are greater after 1990 during the warm phase of the AMO. By quantifying the relationships among climate drivers and carbon fluxes in the Historical and PAC simulations, we both assess the sensitivity of these relationships to the magnitude of ENSO forcing and quantify how other teleconnections affect ENSO-driven Amazon climate feedbacks. We expect that these results will help us improve hypotheses for how Atlantic and Pacific climate trends will affect future Amazon carbon carbon cycling. Pan, Y. et al. A large and persistent carbon sink in the world's forests. Science 333, 988-993 (2011) Brienen, Roel J. W. et al. Long-term decline of the Amazon carbon sink. Nature 519, 344-348 (2015) Botta, A. et al. Long-term variations of climate and carbon fluxes over the Amazon basin. Geophys. Res. Lett. 29 (2002)

NASA-DoD Lead-Free Electronics Project

NASA Technical Reports Server (NTRS)

Kessel, Kurt R.

2009-01-01

In response to concerns about risks from lead-free induced faults to high reliability products, NASA has initiated a multi-year project to provide manufacturers and users with data to clarify the risks of lead-free materials in their products. The project will also be of interest to component manufacturers supplying to high reliability markets. The project was launched in November 2006. The primary technical objective of the project is to undertake comprehensive testing to generate information on failure modes/criteria to better understand the reliability of: - Packages (e.g., TSOP, BOA, PDIP) assembled and reworked with solder interconnects consisting of lead-free alloys - Packages (e.g., TSOP, BOA, PDIP) assembled and reworked with solder interconnects consisting of mixed alloys, lead component finish/lead-free solder and lead-free component finish/SnPb solder.

Land-use and climate change risks in the Amazon and the need of a novel sustainable development paradigm

PubMed Central

Nobre, Carlos A.; Sampaio, Gilvan; Borma, Laura S.; Castilla-Rubio, Juan Carlos; Silva, José S.; Cardoso, Manoel

2016-01-01

For half a century, the process of economic integration of the Amazon has been based on intensive use of renewable and nonrenewable natural resources, which has brought significant basin-wide environmental alterations. The rural development in the Amazonia pushed the agricultural frontier swiftly, resulting in widespread land-cover change, but agriculture in the Amazon has been of low productivity and unsustainable. The loss of biodiversity and continued deforestation will lead to high risks of irreversible change of its tropical forests. It has been established by modeling studies that the Amazon may have two “tipping points,” namely, temperature increase of 4 °C or deforestation exceeding 40% of the forest area. If transgressed, large-scale “savannization” of mostly southern and eastern Amazon may take place. The region has warmed about 1 °C over the last 60 y, and total deforestation is reaching 20% of the forested area. The recent significant reductions in deforestation—80% reduction in the Brazilian Amazon in the last decade—opens up opportunities for a novel sustainable development paradigm for the future of the Amazon. We argue for a new development paradigm—away from only attempting to reconcile maximizing conservation versus intensification of traditional agriculture and expansion of hydropower capacity—in which we research, develop, and scale a high-tech innovation approach that sees the Amazon as a global public good of biological assets that can enable the creation of innovative high-value products, services, and platforms through combining advanced digital, biological, and material technologies of the Fourth Industrial Revolution in progress. PMID:27638214

Land-use and climate change risks in the Amazon and the need of a novel sustainable development paradigm.

PubMed

Nobre, Carlos A; Sampaio, Gilvan; Borma, Laura S; Castilla-Rubio, Juan Carlos; Silva, José S; Cardoso, Manoel

2016-09-27

For half a century, the process of economic integration of the Amazon has been based on intensive use of renewable and nonrenewable natural resources, which has brought significant basin-wide environmental alterations. The rural development in the Amazonia pushed the agricultural frontier swiftly, resulting in widespread land-cover change, but agriculture in the Amazon has been of low productivity and unsustainable. The loss of biodiversity and continued deforestation will lead to high risks of irreversible change of its tropical forests. It has been established by modeling studies that the Amazon may have two "tipping points," namely, temperature increase of 4 °C or deforestation exceeding 40% of the forest area. If transgressed, large-scale "savannization" of mostly southern and eastern Amazon may take place. The region has warmed about 1 °C over the last 60 y, and total deforestation is reaching 20% of the forested area. The recent significant reductions in deforestation-80% reduction in the Brazilian Amazon in the last decade-opens up opportunities for a novel sustainable development paradigm for the future of the Amazon. We argue for a new development paradigm-away from only attempting to reconcile maximizing conservation versus intensification of traditional agriculture and expansion of hydropower capacity-in which we research, develop, and scale a high-tech innovation approach that sees the Amazon as a global public good of biological assets that can enable the creation of innovative high-value products, services, and platforms through combining advanced digital, biological, and material technologies of the Fourth Industrial Revolution in progress.

Land-use and climate change risks in the Amazon and the need of a novel sustainable development paradigm

NASA Astrophysics Data System (ADS)

Nobre, Carlos A.; Sampaio, Gilvan; Borma, Laura S.; Castilla-Rubio, Juan Carlos; Silva, José S.; Cardoso, Manoel

2016-09-01

For half a century, the process of economic integration of the Amazon has been based on intensive use of renewable and nonrenewable natural resources, which has brought significant basin-wide environmental alterations. The rural development in the Amazonia pushed the agricultural frontier swiftly, resulting in widespread land-cover change, but agriculture in the Amazon has been of low productivity and unsustainable. The loss of biodiversity and continued deforestation will lead to high risks of irreversible change of its tropical forests. It has been established by modeling studies that the Amazon may have two “tipping points,” namely, temperature increase of 4 °C or deforestation exceeding 40% of the forest area. If transgressed, large-scale “savannization” of mostly southern and eastern Amazon may take place. The region has warmed about 1 °C over the last 60 y, and total deforestation is reaching 20% of the forested area. The recent significant reductions in deforestation—80% reduction in the Brazilian Amazon in the last decade—opens up opportunities for a novel sustainable development paradigm for the future of the Amazon. We argue for a new development paradigm—away from only attempting to reconcile maximizing conservation versus intensification of traditional agriculture and expansion of hydropower capacity—in which we research, develop, and scale a high-tech innovation approach that sees the Amazon as a global public good of biological assets that can enable the creation of innovative high-value products, services, and platforms through combining advanced digital, biological, and material technologies of the Fourth Industrial Revolution in progress.

Holocene palaeoenvironmental history of the Amazonian mangrove belt

NASA Astrophysics Data System (ADS)

Cohen, Marcelo Cancela Lisboa; Pessenda, Luiz Carlos Ruiz; Behling, Hermann; de Fátima Rossetti, Dilce; França, Marlon Carlos; Guimarães, José Tasso Felix; Friaes, Yuri; Smith, Clarisse Beltrão

2012-11-01

Wetland dynamic in the northern Brazilian Amazon region during the Holocene was reviewed using palynological, carbon and nitrogen isotopes records, and C/N ratio previously published. The integration of 72 radiocarbon dates recorded in 34 sediment cores sampled along the marine and fluvial littoral, and mainly influenced by the Amazon River, reveals that marine influence and mangrove vegetation were wider than today on the mouth of Amazon River between >8990-8690 and 2300-2230 cal yr BP, forming a continuous mangrove belt along the northern Brazilian Amazon littoral. The establishment of this mangrove strip is a direct consequence of the marine incursion caused by post-glacial sea-level rise possibly associated with tectonic subsidence during the Early and Middle Holocene. In the Late Holocene, in areas influenced by the Amazon River discharge, the mangroves were replaced by freshwater vegetation, and the coast morphology evolved from an estuarine dominated into a rectilinear coast due to coastal progradation. Nevertheless, the marine-influenced littoral, which is currently dominated by mangroves and salt-marsh vegetation, has persistently had brackish water vegetation over tidal mud flats throughout the entire Holocene. Likely, the fragmentation of this continuous mangrove line during the Late Holocene was caused by the increase of river freshwater discharge associated to the change from dry into wet climates in the Late Holocene. This caused a significant decrease of tidal water salinity in areas near the mouth of Amazon River. These changes in the Amazon discharge are probably associated with dry and wet periods in the northern Amazon region during the Holocene.

Introduction: Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5)

NASA Astrophysics Data System (ADS)

Martin, S. T.; Artaxo, P.; Machado, L. A. T.; Manzi, A. O.; Souza, R. A. F.; Schumacher, C.; Wang, J.; Andreae, M. O.; Barbosa, H. M. J.; Fan, J.; Fisch, G.; Goldstein, A. H.; Guenther, A.; Jimenez, J. L.; Pöschl, U.; Silva Dias, M. A.; Smith, J. N.; Wendisch, M.

2016-04-01

The Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) Experiment was carried out in the environs of Manaus, Brazil, in the central region of the Amazon basin for 2 years from 1 January 2014 through 31 December 2015. The experiment focused on the complex interactions among vegetation, atmospheric chemistry, and aerosol production on the one hand and their connections to aerosols, clouds, and precipitation on the other. The objective was to understand and quantify these linked processes, first under natural conditions to obtain a baseline and second when altered by the effects of human activities. To this end, the pollution plume from the Manaus metropolis, superimposed on the background conditions of the central Amazon basin, served as a natural laboratory. The present paper, as the introduction to the special issue of GoAmazon2014/5, presents the context and motivation of the GoAmazon2014/5 Experiment. The nine research sites, including the characteristics and instrumentation of each site, are presented. The sites range from time point zero (T0) upwind of the pollution, to T1 in the midst of the pollution, to T2 just downwind of the pollution, to T3 furthest downwind of the pollution (70 km). In addition to the ground sites, a low-altitude G-159 Gulfstream I (G-1) observed the atmospheric boundary layer and low clouds, and a high-altitude Gulfstream G550 (HALO) operated in the free troposphere. During the 2-year experiment, two Intensive Operating Periods (IOP1 and IOP2) also took place that included additional specialized research instrumentation at the ground sites as well as flights of the two aircraft. GoAmazon2014/5 IOP1 was carried out from 1 February to 31 March 2014 in the wet season. GoAmazon2014/5 IOP2 was conducted from 15 August to 15 October 2014 in the dry season. The G-1 aircraft flew during both IOP1 and IOP2, and the HALO aircraft flew during IOP2. In the context of the Amazon basin, the two IOPs also correspond to the clean and biomass burning seasons, respectively. The Manaus plume is present year-round, and it is transported by prevailing northeasterly and easterly winds in the wet and dry seasons, respectively. This introduction also organizes information relevant to many papers in the special issue. Information is provided on the vehicle fleet, power plants, and industrial activities of Manaus. The mesoscale and synoptic meteorologies relevant to the two IOPs are presented. Regional and long-range transport of emissions during the two IOPs is discussed based on satellite observations across South America and Africa. Fire locations throughout the airshed are detailed. In conjunction with the context and motivation of GoAmazon2014/5 as presented in this introduction, research articles including thematic overview articles are anticipated in this special issue to describe the detailed results and findings of the GoAmazon2014/5 Experiment.

Disease Vector Ecology Profile: Colombia

DTIC Science & Technology

1998-12-01

the Amazon Basin. Unknown. Unknown. Culex gnomatus VEE (Ecuador, Peru ) Many mammals and birds, but equines are key reservoirs with high...Arboviruses other than Dengue or Yellow Fever in the Amazon Basin and Associated Northwestern Regions of South America...widespread (Amazonia, Orinoquia, Cauca Valley, Caribbean regions), and to mefloquine and amodiaquine ( Amazon Basin). Plasmodium vivax resistance

Selective logging in the Brazilian Amazon.

Treesearch

G. P. Asner; D. E. Knapp; E. N. Broadbent; P. J. C. Oliveira; M Keller; J. N. Silva

2005-01-01

Amazon deforestation has been measured by remote sensing for three decades. In comparison, selective logging has been mostly invisible to satellites. We developed a large-scale, high-resolution, automated remote-sensing analysis of selective logging in the top five timber-producing states of the Brazilian Amazon. Logged areas ranged from 12,075 to 19,823 square...

The Green Ocean: Precipitation Insights from the GoAmazon2014/5 Experiment

DOE PAGES

Wang, Die; Giangrande, Scott E.; Bartholomew, Mary Jane; ...

2018-02-07

This study summarizes the precipitation properties collected during the GoAmazon2014/5 campaign near Manaus in central Amazonia, Brazil. Precipitation breakdowns, summary radar rainfall relationships and self-consistency concepts from a coupled disdrometer and radar wind profiler measurements are presented. The properties of Amazon cumulus and associated stratiform precipitation are discussed, including segregations according to seasonal (Wet/Dry regime) variability, cloud echo-top height and possible aerosol influences on the apparent oceanic characteristics of the precipitation drop size distributions. Overall, we observe that the Amazon precipitation straddles behaviors found during previous U.S. Department of Energy Atmospheric Radiation Measurements program (ARM) tropical deployments, with distributions favoringmore » higher concentrations of smaller drops than ARM continental examples. Oceanic type precipitation characteristics are predominantly observed during the Amazon Wet seasons. Finally, an exploration of the controls on Wet season precipitation properties reveals that wind direction, as compared with other standard radiosonde thermodynamic parameters or aerosol count/regime classifications performed at the ARM site, provides a good indicator for those Wet season Amazon events having an oceanic character for their precipitation drop size distributions.« less

The Green Ocean: Precipitation Insights from the GoAmazon2014/5 Experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Die; Giangrande, Scott E.; Bartholomew, Mary Jane

This study summarizes the precipitation properties collected during the GoAmazon2014/5 campaign near Manaus in central Amazonia, Brazil. Precipitation breakdowns, summary radar rainfall relationships and self-consistency concepts from a coupled disdrometer and radar wind profiler measurements are presented. The properties of Amazon cumulus and associated stratiform precipitation are discussed, including segregations according to seasonal (Wet/Dry regime) variability, cloud echo-top height and possible aerosol influences on the apparent oceanic characteristics of the precipitation drop size distributions. Overall, we observe that the Amazon precipitation straddles behaviors found during previous U.S. Department of Energy Atmospheric Radiation Measurements program (ARM) tropical deployments, with distributions favoringmore » higher concentrations of smaller drops than ARM continental examples. Oceanic type precipitation characteristics are predominantly observed during the Amazon Wet seasons. Finally, an exploration of the controls on Wet season precipitation properties reveals that wind direction, as compared with other standard radiosonde thermodynamic parameters or aerosol count/regime classifications performed at the ARM site, provides a good indicator for those Wet season Amazon events having an oceanic character for their precipitation drop size distributions.« less

Aqua-planet simulations of the formation of the South Atlantic convergence zone

NASA Technical Reports Server (NTRS)

Nieto Ferreira, Rosana; Chao, Winston C.

2013-01-01

The impact of Amazon Basin convection and cold fronts on the formation and maintenance of the South Atlantic convergence zone (SACZ) is studied using aqua-planet simulations with a general circulation model. In the model, a circular patch of warm sea-surface temperature (SST) is used to mimic the effect of the Amazon Basin on South American monsoon convection. The aqua-planet simulations were designed to study the effect of the strength and latitude of Amazon Basin convection on the formation of the SACZ. The simulations indicate that the strength of the SACZ increases as the Amazon convection intensifies and is moved away from the equator. Of the two controls studied here, the latitude of the Amazon convection exerts the strongest effect on the strength of the SACZ. An analysis of the synoptic-scale variability in the simulations shows the importance of frontal systems in the formation of the aqua-planet SACZ. Composite time series of frontal systems that occurred in the simulations show that a robust SACZ occurs when fronts penetrate into the subtropics and become stationary there as they cross eastward of the longitude of the Amazon Basin. Moisture convergence associated with these frontal systems produces rainfall not along the model SACZ region and along a large portion of the northern model Amazon Basin. Simulations in which the warm SST patch was too weak or too close to the equator did not produce frontal systems that extended into the tropics and became stationary, and did not form a SACZ. In the model, the SACZ forms as Amazon Basin convection strengthens and migrates far enough southward to allow frontal systems to penetrate into the tropics and stall over South America. This result is in agreement with observations that the SACZ tends to form after the onset of the monsoon season in the Amazon Basin.

Oxygen isotopes in tree rings record variation in precipitation δ18O and amount effects in the south of Mexico.

PubMed

Brienen, Roel J W; Hietz, Peter; Wanek, Wolfgang; Gloor, Manuel

2013-12-01

[1] Natural archives of oxygen isotopes in precipitation may be used to study changes in the hydrological cycle in the tropics, but their interpretation is not straightforward. We studied to which degree tree rings of Mimosa acantholoba from southern Mexico record variation in isotopic composition of precipitation and which climatic processes influence oxygen isotopes in tree rings ( δ 18 O tr ). Interannual variation in δ 18 O tr was highly synchronized between trees and closely related to isotopic composition of rain measured at San Salvador, 710 km to the southwest. Correlations with δ 13 C, growth, or local climate variables (temperature, cloud cover, vapor pressure deficit (VPD)) were relatively low, indicating weak plant physiological influences. Interannual variation in δ 18 O tr correlated negatively with local rainfall amount and intensity. Correlations with the amount of precipitation extended along a 1000 km long stretch of the Pacific Central American coast, probably as a result of organized storm systems uniformly affecting rainfall in the region and its isotope signal; episodic heavy precipitation events, of which some are related to cyclones, deposit strongly 18 O-depleted rain in the region and seem to have affected the δ 18 O tr signal. Large-scale controls on the isotope signature include variation in sea surface temperatures of tropical north Atlantic and Pacific Ocean. In conclusion, we show that δ 18 O tr of M . acantholoba can be used as a proxy for source water δ 18 O and that interannual variation in δ 18 O prec is caused by a regional amount effect. This contrasts with δ 18 O signatures at continental sites where cumulative rainout processes dominate and thus provide a proxy for precipitation integrated over a much larger scale. Our results confirm that processes influencing climate-isotope relations differ between sites located, e.g., in the western Amazon versus coastal Mexico, and that tree ring isotope records can help in disentangling the processes influencing precipitation δ 18 O.

Multiresolution quantification of deciduousness in West-Central African forests

NASA Astrophysics Data System (ADS)

Viennois, G.; Barbier, N.; Fabre, I.; Couteron, P.

2013-11-01

The characterization of leaf phenology in tropical forests is of major importance for forest typology as well as to improve our understanding of earth-atmosphere-climate interactions or biogeochemical cycles. The availability of satellite optical data with a high temporal resolution has permitted the identification of unexpected phenological cycles, particularly over the Amazon region. A primary issue in these studies is the relationship between the optical reflectance of pixels of 1 km or more in size and ground information of limited spatial extent. In this paper, we demonstrate that optical data with high to very-high spatial resolution can help bridge this scale gap by providing snapshots of the canopy that allow discernment of the leaf-phenological stage of trees and the proportions of leaved crowns within the canopy. We also propose applications for broad-scale forest characterization and mapping in West-Central Africa over an area of 141 000 km2. Eleven years of the Moderate Resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI) data were averaged over the wet and dry seasons to provide a data set of optimal radiometric quality at a spatial resolution of 250 m. Sample areas covered at a very-high (GeoEye) and high (SPOT-5) spatial resolution were used to identify forest types and to quantify the proportion of leaved trees in the canopy. The dry-season EVI was positively correlated with the proportion of leaved trees in the canopy. This relationship allowed the conversion of EVI into canopy deciduousness at the regional level. On this basis, ecologically important forest types could be mapped, including young secondary, open Marantaceae, Gilbertiodendron dewevrei and swamp forests. We show that in West-Central African forests, a large share of the variability in canopy reflectance, as captured by the EVI, is due to variation in the proportion of leaved trees in the upper canopy, thereby opening new perspectives for biodiversity and carbon-cycle applications.

Multiresolution quantification of deciduousness in West Central African forests

NASA Astrophysics Data System (ADS)

Viennois, G.; Barbier, N.; Fabre, I.; Couteron, P.

2013-04-01

The characterization of leaf phenology in tropical forests is of major importance and improves our understanding of earth-atmosphere-climate interactions. The availability of satellite optical data with a high temporal resolution has permitted the identification of unexpected phenological cycles, particularly over the Amazon region. A primary issue in these studies is the relationship between the optical reflectance of pixels of 1 km or more in size and ground information of limited spatial extent. In this paper, we demonstrate that optical data with high to very-high spatial resolution can help bridge this scale gap by providing snapshots of the canopy that allow discernment of the leaf-phenological stage of trees and the proportions of leaved crowns within the canopy. We also propose applications for broad-scale forest characterization and mapping in West Central Africa over an area of 141 000 km2. Eleven years of the Moderate Resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI) data were averaged over the wet and dry seasons to provide a dataset of optimal radiometric quality at a spatial resolution of 250 m. Sample areas covered at a very-high (GeoEye) and high (SPOT-5) spatial resolution were used to identify forest types and to quantify the proportion of leaved trees in the canopy. The dry season EVI was positively correlated with the proportion of leaved trees in the canopy. This relationship allowed the conversion of EVI into canopy deciduousness at the regional level. On this basis, ecologically important forest types could be mapped, including young secondary, open Marantaceae, Gilbertiodendron dewevrei and swamp forests. We show that in west central African forests, a large share of the variability in canopy reflectance, as captured by the EVI, is due to variation in the proportion of leaved trees in the upper canopy, thereby opening new perspectives for biodiversity and carbon-cycle applications.

The economic value of the climate regulation ecosystem service provided by the Amazon rainforest

NASA Astrophysics Data System (ADS)

Heil Costa, Marcos; Pires, Gabrielle; Fontes, Vitor; Brumatti, Livia

2017-04-01

The rainy Amazon climate allowed important activities to develop in the region as large rainfed agricultural lands and hydropower plants. The Amazon rainforest is an important source of moisture to the regional atmosphere and helps regulate the local climate. The replacement of forest by agricultural lands decreases the flux of water vapor into the atmosphere and changes the precipitation patterns, which may severely affect such economic activities. Assign an economic value to this ecosystem service may emphasize the significance to preserve the Amazon rainforest. In this work, we provide a first approximation of the quantification of the climate regulation ecosystem service provided by the Amazon rainforest using the marginal production method. We use climate scenarios derived from Amazon deforestation scenarios as input to crop and runoff models to assess how land use change would affect agriculture and hydropower generation. The effects of forest removal on soybean production and on cattle beef production can both be as high as US 16 per year per ha deforested, and the effects on hydropower generation can be as high as US 8 per year per ha deforested. We consider this as a conservative estimate of a permanent service provided by the rainforest. Policy makers and other Amazon agriculture and energy businesses must be aware of these numbers, and consider them while planning their activities.

Fire in the Amazon: impact of experimental fuel addition on responses of ants and their interactions with myrmecochorous seeds.

PubMed

Paolucci, Lucas N; Maia, Maria L B; Solar, Ricardo R C; Campos, Ricardo I; Schoereder, José H; Andersen, Alan N

2016-10-01

The widespread clearing of tropical forests causes lower tree cover, drier microclimate, and higher and drier fuel loads of forest edges, increasing the risk of fire occurrence and its intensity. We used a manipulative field experiment to investigate the influence of fire and fuel loads on ant communities and their interactions with myrmecochorous seeds in the southern Amazon, a region currently undergoing extreme land-use intensification. Experimental fires and fuel addition were applied to 40 × 40-m plots in six replicated blocks, and ants were sampled between 15 and 30 days after fires in four strata: subterranean, litter, epigaeic, and arboreal. Fire had extensive negative effects on ant communities. Highly specialized cryptobiotic and predator species of the litter layer and epigaeic specialist predators were among the most sensitive, but we did not find evidence of overall biotic homogenization following fire. Fire reduced rates of location and transport of myrmecochorous seeds, and therefore the effectiveness of a key ecosystem service provided by ants, which we attribute to lower ant abundance and increased thermal stress. Experimental fuel addition had only minor effects on attributes of fire severity, and limited effects on ant responses to fire. Our findings indicate that enhanced fuel loads will not decrease ant diversity and ecosystem services through increased fire severity, at least in wetter years. However, higher fuel loads can still have a significant effect on ants from Amazonian rainforests because they increase the risk of fire occurrence, which has a detrimental impact on ant communities and a key ecosystem service they provide.

DIVERSITY OF BAT-ASSOCIATED LEPTOSPIRA IN THE PERUVIAN AMAZON INFERRED BY BAYESIAN PHYLOGENETIC ANALYSIS OF 16S RIBOSOMAL DNA SEQUENCES

PubMed Central

MATTHIAS, MICHAEL A.; DÍAZ, M. MÓNICA; CAMPOS, KALINA J.; CALDERON, MARITZA; WILLIG, MICHAEL R.; PACHECO, VICTOR; GOTUZZO, EDUARDO; GILMAN, ROBERT H.; VINETZ, JOSEPH M.

2008-01-01

The role of bats as potential sources of transmission to humans or as maintenance hosts of leptospires is poorly understood. We quantified the prevalence of leptospiral colonization in bats in the Peruvian Amazon in the vicinity of Iquitos, an area of high biologic diversity. Of 589 analyzed bats, culture (3 of 589) and molecular evidence (20 of 589) of leptospiral colonization was found in the kidneys, yielding an overall colonization rate of 3.4%. Infection rates differed with habitat and location, and among different bat species. Bayesian analysis was used to infer phylogenic relationships of leptospiral 16S ribosomal DNA sequences. Tree topologies were consistent with groupings based on DNA-DNA hybridization studies. A diverse group of leptospires was found in peri-Iquitos bat populations including Leptospira interrogans (5 clones), L. kirschneri (1), L. borgpetersenii (4), L. fainei (1), and two previously undescribed leptospiral species (8). Although L. kirschenri and L. interrogans have been previously isolated from bats, this report is the first to describe L. borgpetersenii and L. fainei infection of bats. A wild animal reservoir of L. fainei has not been previously described. The detection in bats of the L. interrogans serovar Icterohemorrhagiae, a leptospire typically maintained by peridomestic rats, suggests a rodent-bat infection cycle. Bats in Iquitos maintain a genetically diverse group of leptospires. These results provide a solid basis for pursuing molecular epidemiologic studies of bat-associated Leptospira, a potentially new epidemiologic reservoir of transmission of leptospirosis to humans. PMID:16282313

Application of DNA Barcodes in Asian Tropical Trees – A Case Study from Xishuangbanna Nature Reserve, Southwest China

PubMed Central

Conran, John G.; Li, Jie

2015-01-01

Background Within a regional floristic context, DNA barcoding is more useful to manage plant diversity inventories on a large scale and develop valuable conservation strategies. However, there are no DNA barcode studies from tropical areas of China, which represents one of the biodiversity hotspots around the world. Methodology and Principal Findings A DNA barcoding database of an Asian tropical trees with high diversity was established at Xishuangbanna Nature Reserve, Yunnan, southwest China using rbcL and matK as standard barcodes, as well as trnH–psbA and ITS as supplementary barcodes. The performance of tree species identification success was assessed using 2,052 accessions from four plots belonging to two vegetation types in the region by three methods: Neighbor-Joining, Maximum-Likelihood and BLAST. We corrected morphological field identification errors (9.6%) for the three plots using rbcL and matK based on Neighbor-Joining tree. The best barcode region for PCR and sequencing was rbcL (97.6%, 90.8%), followed by trnH–psbA (93.6%, 85.6%), while matK and ITS obtained relative low PCR and sequencing success rates. However, ITS performed best for both species (44.6–58.1%) and genus (72.8–76.2%) identification. With trnH–psbA slightly less effective for species identification. The two standard barcode rbcL and matK gave poor results for species identification (24.7–28.5% and 31.6–35.3%). Compared with other studies from comparable tropical forests (e.g. Cameroon, the Amazon and India), the overall performance of the four barcodes for species identification was lower for the Xishuangbanna Nature Reserve, possibly because of species/genus ratios and species composition between these tropical areas. Conclusions/Significance Although the core barcodes rbcL and matK were not suitable for species identification of tropical trees from Xishuangbanna Nature Reserve, they could still help with identification at the family and genus level. Considering the relative sequence recovery and the species identification performance, we recommend the use of trnH–psbA and ITS in combination as the preferred barcodes for tropical tree species identification in China. PMID:26121045

Metagenomics Analysis of Microorganisms in Freshwater Lakes of the Amazon Basin.

PubMed

Toyama, Danyelle; Kishi, Luciano Takeshi; Santos-Júnior, Célio Dias; Soares-Costa, Andrea; de Oliveira, Tereza Cristina Souza; de Miranda, Fernando Pellon; Henrique-Silva, Flávio

2016-12-22

The Amazon Basin is the largest hydrographic basin on the planet, and the dynamics of its aquatic microorganisms strongly impact global biogeochemical cycles. However, it remains poorly studied. This metagenome project was performed to obtain a snapshot of prokaryotic microbiota from four important lakes in the Amazon Basin. Copyright © 2016 Toyama et al.

Oil and gas projects in the Western Amazon: threats to wilderness, biodiversity, and indigenous peoples.

PubMed

Finer, Matt; Jenkins, Clinton N; Pimm, Stuart L; Keane, Brian; Ross, Carl

2008-08-13

The western Amazon is the most biologically rich part of the Amazon basin and is home to a great diversity of indigenous ethnic groups, including some of the world's last uncontacted peoples living in voluntary isolation. Unlike the eastern Brazilian Amazon, it is still a largely intact ecosystem. Underlying this landscape are large reserves of oil and gas, many yet untapped. The growing global demand is leading to unprecedented exploration and development in the region. We synthesized information from government sources to quantify the status of oil development in the western Amazon. National governments delimit specific geographic areas or "blocks" that are zoned for hydrocarbon activities, which they may lease to state and multinational energy companies for exploration and production. About 180 oil and gas blocks now cover approximately 688,000 km(2) of the western Amazon. These blocks overlap the most species-rich part of the Amazon. We also found that many of the blocks overlap indigenous territories, both titled lands and areas utilized by peoples in voluntary isolation. In Ecuador and Peru, oil and gas blocks now cover more than two-thirds of the Amazon. In Bolivia and western Brazil, major exploration activities are set to increase rapidly. Without improved policies, the increasing scope and magnitude of planned extraction means that environmental and social impacts are likely to intensify. We review the most pressing oil- and gas-related conservation policy issues confronting the region. These include the need for regional Strategic Environmental Impact Assessments and the adoption of roadless extraction techniques. We also consider the conflicts where the blocks overlap indigenous peoples' territories.

On Dams in the Amazon Basin, Teleconnected Impacts, and Neighbors Unaware of the Damage to their Natural Resources and Assets.

NASA Astrophysics Data System (ADS)

Latrubesse, E. M.; Park, E.

2017-12-01

In a recent study, Latrubesse et al., (2017) demonstrated that the accumulated negative environmental effects of more than one hundred existing dams and at least 288 proposed dams, if constructed, will trigger massive hydrophysical and biotic disturbances that will affect the Amazon basin's floodplains, estuary and sediment plume. The authors introduced a Dam Environmental Vulnerability Index (DEVI) to quantify the current and potential impacts of dams in the basin. The current and potential vulnerabilities of different regions of the Amazon basin was assessed, and the results highlighted the need for a more efficient and integrative legal framework involving all nine countries of the basin in an anticipatory assessment to minimize the negative socio-environmental and biotic impacts of hydropower developments. Here we present expanded information on the potential impacts of dams in the lower Amazon and the northeast Atlantic coast of South America, and revisit our proposed integrative strategies for basin management which are based on the adaptation and functionality of the institutional and legal framework already existing in the Amazon countries. Participative strategies involving members from the Amazon Cooperation Treaty Organization (ACTO) countries, and additional members (for example, France), such as the creation of a basin committee -as defined by the Brazilian Law of Waters of Brazil-, and the creation of an Amazon Basin Panel allowing the participation of scientists that could have a policy-relevant role but should be not policy-prescriptive, are also discussed. ReferencesLatrubesse, E., Arima E. Dunne T., Park E., Baker V, Horta F.,Wight, C., Wittmann F., Zuanon, J., Baker P., Ribas C, Norgaard R., Filizola N., Ansar A., Flyvbjerg B., Stevaux, J. 2017. Damming the rivers of the Amazon basin. Nature, 546, 363-369.

Oil and Gas Projects in the Western Amazon: Threats to Wilderness, Biodiversity, and Indigenous Peoples

PubMed Central

Finer, Matt; Jenkins, Clinton N.; Pimm, Stuart L.; Keane, Brian; Ross, Carl

2008-01-01

Background The western Amazon is the most biologically rich part of the Amazon basin and is home to a great diversity of indigenous ethnic groups, including some of the world's last uncontacted peoples living in voluntary isolation. Unlike the eastern Brazilian Amazon, it is still a largely intact ecosystem. Underlying this landscape are large reserves of oil and gas, many yet untapped. The growing global demand is leading to unprecedented exploration and development in the region. Methodology/Principal Findings We synthesized information from government sources to quantify the status of oil development in the western Amazon. National governments delimit specific geographic areas or “blocks” that are zoned for hydrocarbon activities, which they may lease to state and multinational energy companies for exploration and production. About 180 oil and gas blocks now cover ∼688,000 km2 of the western Amazon. These blocks overlap the most species-rich part of the Amazon. We also found that many of the blocks overlap indigenous territories, both titled lands and areas utilized by peoples in voluntary isolation. In Ecuador and Peru, oil and gas blocks now cover more than two-thirds of the Amazon. In Bolivia and western Brazil, major exploration activities are set to increase rapidly. Conclusions/Significance Without improved policies, the increasing scope and magnitude of planned extraction means that environmental and social impacts are likely to intensify. We review the most pressing oil- and gas-related conservation policy issues confronting the region. These include the need for regional Strategic Environmental Impact Assessments and the adoption of roadless extraction techniques. We also consider the conflicts where the blocks overlap indigenous peoples' territories. PMID:18716679

Earth Observations taken by the Expedition 17 Crew

NASA Image and Video Library

2008-08-19

ISS017-E-013856 (19 Aug. 2008) --- Amazon River, Brazil is featured in this image photographed by an Expedition 17 crewmember on the International Space Station. This image shows the huge sunglint zone, common to oblique views from space, of the setting sun shining off the Amazon River and numerous lakes on its floodplain. About 150 kilometers of the sinuous Amazon course is shown here, as it appears about 1,000 kilometers from the Atlantic Ocean. The Uatuma River enters on the north side of the Amazon (top). A small side channel of the very large Madeira River enters the view from the left. Tupinambarama Island occupies the swampy wetlands between the Amazon and Madeira rivers. Sunglint images reveal great detail in waterbodies -- in this case the marked difference between the smooth outline of the Amazon and the jagged shoreline of the Uatuma River. The jagged shoreline results from valley sides being eroded in relatively hard rocks. The Uatuma River has since been dammed up by the sediment mass of the Amazon floodplain. Because the Amazon flows in its own soft sediment, its huge water discharge smooths the banks. Another dammed valley (known as a ria) is visible beneath the cirrus cloud of a storm (bottom). Although no smoke plumes from forest fires are visible in the view, two kinds of evidence show that there is smoke in the atmosphere. The coppery color of the sunglint is typically produced by smoke particles and other aerosols scattering yellow and red light. Second, a small patch of cloud (top right) casts a distinct shadow. The shadow, say scientists, is visible because so many particles in the surrounding sunlit parts of the atmosphere reflect light to the camera.