Education Packet, 1972. (Annotated Bibliography of Classroom Materials on Asia.)

ERIC Educational Resources Information Center

Committee of Concerned Asian Scholars, Stanford, CA.

Three major sections comprise this annotated bibliography of recent books and classroom materials compiled to help teachers plan secondary Asian studies courses. The first section lists books, many of which are available in paperback, providing teachers with sources for background reading on Asia in general, Indochina, Japan, Korea, and China.…

Aerospace Bibliography, Fourth Edition.

ERIC Educational Resources Information Center

National Aerospace Education Council, Washington, DC.

This annotated bibliography, intended for elementary and secondary school teachers, their pupils, and general adult readers contains grade level coded lists of books, reference works, periodicals, and teaching aids dealing with astronomy and space flight subjects. The reading material is listed alphabetically by author. The teaching aids in Part…

Razzle Dazzle Reading Circus: A Bibliography of Books in Recorded and Braille Formats for Young Readers from Preschool through Junior High. Silver Summer Scrapbook--Summer Library Program, 1993.

ERIC Educational Resources Information Center

Sumner, Mary Ann, Comp.

This annotated bibliography comprises an alphabetical listing of 34 books on circuses available in special formats. The list has books about true circus stories; make believe stories; and circus animals. The reading levels of the books range from preschool through junior high school. Formats included in the bibliography are cassette books; braille…

Multicultural Early Childhood Education Bibliography and Resource List.

ERIC Educational Resources Information Center

Mock, Karen R., Comp.

Compiled for early childhood educators, this list of resources for multicultural education provides a total of 153 entries in the categories of readings for teachers, curriculum materials, nonprint media, children's books, resource bibliographies and catalogues, Canadian periodicals, and resource agencies. Brief annotations accompany most entries.…

Annotated Bibliography: Afro-American, Hispano and Amerind; with Amerinc; with Audio-Visual Materials List.

ERIC Educational Resources Information Center

Haberbosch, John F.; And Others

Readings and audiovisual materials, selected especially for educators, related to the study of Afro-American, Hispano-American, and American Indian cultures are included in this 366-item annotated bibliography covering the period from 1861 to 1968. Historical, cultural, and biographical materials are included for each of the three cultures as well…

Quasars and Active Galaxies: A Reading List.

ERIC Educational Resources Information Center

Fraknoi, Andrew

1988-01-01

Contains the annotated bibliographies of introductory books and sections of books, recent introductory articles, more advanced articles, and more advanced books dealing with quasars and active galaxies. (CW)

Readings and Resources on Autism: Update 2001. ERIC Mini-Bib EB13.

ERIC Educational Resources Information Center

Sorenson, Barbara R., Comp.

This mini-bibliography lists readings and resources relating to children and adolescents with autism. It includes annotated bibliographies for sources that address: (1) social skills training for children and adolescents with autism; (2) Asperger syndrome; (3) Individualized Education Programs for students with autism; (4) teaching strategies for…

Assessing and Evaluating Department of Defense Efforts to Inform, Influence, and Persuade: An Annotated Reading List

DTIC Science & Technology

2015-01-01

reading, but the read- ings in this section may be given a lower priority. Paul W. Farris, Neil T. Bendle, Phillip E. Pfeifer, and David J. Reibstein...inform, influence, and persuade. Chip Heath and Dan Heath , Made to Stick: Why Some Ideas Survive and Others Die, New York: Random House, 2007. This

Learning about the Soviets: Selected Teaching Resources.

ERIC Educational Resources Information Center

Educators for Social Responsibility, Cambridge, MA.

Over 120 resources for teaching secondary and postsecondary level students about the Soviet Union, most of which have been produced since 1980, are listed in this guide. A resource list focusing on "Ten Things Soviets Say You Should Read to Understand Them" precedes annotated citations of articles; books; curricula; organizations…

Short Historical Fiction To Get Children Reading.

ERIC Educational Resources Information Center

Sullivan, Kathleen

1997-01-01

Provides an annotated bibliography of short historical fiction and picture books for readers in grades K-8. Includes a list of selected Caldecott and Newbery winners with historical themes or backgrounds and a list of activity books featuring Spanish exploration in Mexico, Roman art and fashion, medieval Europe, and cowboys. (PEN)

Barely Afloat, or Please Pass the Plankton

ERIC Educational Resources Information Center

Hemenway, Leone

1974-01-01

Although oceanography is included in most elementary school curricula, there are few easily read oceanography books for the school library. An annotated list of 70 recommended titles is included. (PF)

Sourcebook for Sex Equality: In-Service Training. An Annotated Listing of Materials and Media for Affirmative Action In-Service Training. Bibliographic Series, 2.

ERIC Educational Resources Information Center

Hulme, Marylin A., Comp.

The materials contained in this annotated bibliography include films, slide shows, information resources, evaluation materials, sample workshop formats, and guidelines for sex-fair and race-fair materials and group activities. The bibliography is divided into four sections: (1) "General Resources" includes readings in sex role stereotyping,…

RIF's [Reading is Fundamental] Guide to Book Selection 1973.

ERIC Educational Resources Information Center

Smithsonian Institution, Washington, DC. National Reading is Fun-damental Program.

This book guide is an annotated list of available paperback titles for elementary school children for use by "Reading is FUNdamental" program directors. Some high-interest, low-vocabulary titles suitable for older children as well as special booklists for black, American Indian, and Spanish-speaking children are also included. All books…

Reading Guidance: Death and Grief.

ERIC Educational Resources Information Center

Smith, Alice Gullen

1989-01-01

Gives guidelines for the librarian using reading guidance (similar to bibliotherapy). Provides a nine-item annotated bibliography of novels for children and adolescents on the subject of death and grief. Appends an embryo list of categories suitable for content analysis of any file librarians might wish to keep on books suitable for use in this…

What Shall I Read on Japan? An Introductory Guide. Twelfth Edition.

ERIC Educational Resources Information Center

Marks, Alfred H.

This highly selective annotated list of works may be read with profit by the serious beginning student or casual reader interested in things Japanese. As many entries as possible from the earlier editions have been retained. All new materials cited were reviewed. Included are reference books, guides, fiction, novels, translations, research…

More Teens' Favorite Books: Young Adults' Choices 1993-1995.

ERIC Educational Resources Information Center

International Reading Association, Newark, DE.

Making the job of encouraging adolescents to read for pleasure less of a challenge, this book presents an annotated list of 95 books chosen by adolescents themselves as part of an annual program sponsored by the International Reading Association. Entries in the book are grouped by type or genre of publication to make books of a particular interest…

Sourcebook for English Teachers: Directed Reading/Teaching Guides for Selected Literacy Works. Volume 2.

ERIC Educational Resources Information Center

Ley, Terry C., Ed.

This sourcebook presents reading guides for 27 literary works frequently used by secondary school English teachers. The guides contain an overview of the work, a pool of instructional objectives for each work, a variety of activities, a series of discussion options, suggestions for evaluation, and annotated lists of related works. Included are:…

Sourcebook for English Teachers: Directed Reading/Teaching Guides for Selected Literary Works. Volume 1.

ERIC Educational Resources Information Center

Ley, Terry C., Ed.

This sourcebook presents reading guides for 22 literary works frequently used by secondary school English teachers. The guides contain an overview of the work, a pool of instructional objectives for each work, a variety of activities, a series of discussion options, suggestions for evaluation, and annotated lists of related works. Included are:…

Sourcebook for English Teachers: Directed Reading/Teaching Guides for Selected Literacy Works. Volume 3.

ERIC Educational Resources Information Center

Ley, Terry C., Ed.

This sourcebook presents reading guides for 39 literary works frequently used by scondary school English teachers. The guides contain an overview of the work, a pool of instructional objectives for each work, a variety of activities, a series of discussion options, suggestions for evaluation, and annotated lists of related works. Included are:…

Focus on Hinduism: Audio-Visual Resources for Teaching Religion. Occasional Publication No. 23.

ERIC Educational Resources Information Center

Dell, David; And Others

The guide presents annotated lists of audio and visual materials about the Hindu religion. The authors point out that Hinduism cannot be comprehended totally by reading books; thus the resources identified in this guide will enhance understanding based on reading. The guide is intended for use by high school and college students, teachers,…

Children's Reading in America, 1776. A Selection of Titles.

ERIC Educational Resources Information Center

Haviland, Virginia, Comp.

This annotated list of reading materials available to American children in 1776 includes both items published on this side of the Atlantic and works issued abroad and sold here as imports. The titles are divided into five categories: (1) primers and other instructional texts, (2) works intended for moral and religious instruction, (3) stories, (4)…

Black Fiction and Biographies: Current Books for Children and Adolescents. WCTE Service Bulletin No. 28.

ERIC Educational Resources Information Center

Karolides, Nicholas J., Comp.

This bibliography of books for children and adolescents was developed primarily from "The New York Times Book Review" and the "Christian Science Monitor" over the past several years. Fiction and biography are listed separately. Publisher, reading level, source of the listing, and a brief annotation are given for each title. (AA)

Mollified in Madison: Optimism in Contemporary American Literature.

ERIC Educational Resources Information Center

Vale, Geraldine R.

1989-01-01

Discusses difficulties in teaching/reading "depressing" twentieth-century American literature. Suggests that the underlying themes are not depressing, and illustrates this assertion with examples from Edith Wharton's "Ethan Frome" and F. Scott Fitzgerald's "The Great Gatsby." Provides an annotated list of 25…

The RIF Guide to Encouraging Young Readers. A Fun-filled Sourcebook of over 200 Favorite Reading Activities of Kids and Parents from Across the Country, Plus an Annotated List of Books and Resources.

ERIC Educational Resources Information Center

Graves, Ruth, Ed.

Based on the notion that reading is both fun and fundamental, this book contains a stimulating array of activities that parents can use to engage their children in reading from the toddler stage through primary school. The first section provides information on how to use the guide, and some tips for encouraging young readers. The second and major…

Book Repair Manual.

ERIC Educational Resources Information Center

Milevski, Robert J.

1995-01-01

This book repair manual developed for the Illinois Cooperative Conservation Program includes book structure and book problems, book repair procedures for 4 specific problems, a description of adhesive bindings, a glossary, an annotated list of 11 additional readings, book repair supplies and suppliers, and specifications for book repair kits. (LRW)

A Bibliography for the Study of Magazines.

ERIC Educational Resources Information Center

Schacht, J. H.

This annotated bibliography contains a list of readings compiled for a course in magazine editing at the University of Illinois. This bibliography includes materials on the history of magazines, advertising in magazines, readership and audience studies, analyses of magazine content, information on magazine circulation, editorial research and its…

Libros bilingues, traducciones desparpajadas y traducciones pobres: libros en espanol publicados en los Estados Unidos (Bilingual Books, Careless Translations, and Bad Translations: Books in Spanish Published in the United States).

ERIC Educational Resources Information Center

Schon, Isabel

2003-01-01

Discusses the importance of providing Spanish-speaking students with high-quality reading materials in Spanish and avoiding materials that have been badly translated into Spanish. Provides an annotated list of 10 books recommended for young children and a Spanish grammar for more advanced readers. Lists 29 badly translated books. Describes a Web…

Bibliografia Especializada: Educacion Basica (Specialized Bibliography: Basic Education).

ERIC Educational Resources Information Center

Boletin del Centro Nacional de Documentacion e Informacion Educativa, 1971

1971-01-01

This specialized international bibliography on basic education lists almost 50 documents written between 1969 and 1971 in Spanish, French, and Italian on the topic of elementary education. Annotations are provided for nine of the articles. Specific topics range from elementary reading and math education to curriculum planning. (VM)

Personality and Second Language Learning. Language in Education: Theory and Practice, No. 12.

ERIC Educational Resources Information Center

Hodge, Virginia D.

This annotated reading list addresses the problem of the paucity of literature dealing specifically with the relationship between personality and language learning. There is no general theoretical model that encompasses personality theory, self-concept, ego development, learning theory, motivation, and body image as they relate to…

A Selected Bibliography of Functional Literacy Materials for Adult Learners.

ERIC Educational Resources Information Center

Berg, Joann La Perla; Wallace, Virginia A.

This document is a selected, annotated bibliography of materials published in the area of coping skills for adults with functional reading skills. Publications are listed alphabetically by title under the following general topics: general coping skills; newspapers; occupational information; consumer economics; pregnancy and parenting; housing;…

"Have Them Read a Good Book": Enriching the Scientific and Technical Writing Curriculum.

ERIC Educational Resources Information Center

Miles, Thomas H.

1989-01-01

Lists approximately 200 recent science and technology book titles (some with annotations). Notes that this literature acquaints students with the history of science and technology and helps them understand debated philosophical issues. Includes the following subject areas: anthropology; chemistry; computers and artificial intelligence; ecology;…

Biographies of Women Scientists for Young Readers.

ERIC Educational Resources Information Center

Bettis, Catherine; Smith, Walter S.

The participation of women in the physical sciences and engineering woefully lags behind that of men. One significant vehicle by which students learn to identify with various adult roles is through the literature they read. This annotated bibliography lists and describes biographies on women scientists primarily focusing on publications after…

Proyecto Leer Bulletin Number 6.

ERIC Educational Resources Information Center

Tome, Martha V., Ed.

This annotated, cumulative bibliography, developed by the Proyecto Leer Program, of more than 600 selected works in Spanish focuses on works which meet the following criteria: (1) reading difficulty does not exceed 10th grade level, and (2) selections are suitable for a Spanish-American community. Books for children are listed separately from…

The Art of Mexico.

ERIC Educational Resources Information Center

Saccardi, Marianne

1997-01-01

Provides an annotated bibliography of books for grades K and up which explores the folklore, poetry, fiction, and art of Mexico, and focuses on the Mayans and Aztecs and Diego Rivera and Frida Kahlo. Also suggests various research, reading, drama, music, social studies, physical education, and art activities and lists related videos and Internet…

Books for You: A Booklist for Senior High Students. Tenth Edition.

ERIC Educational Resources Information Center

Abrahamson, Richard F., Ed.; Carter, Betty, Ed.

The 1200 books, published from 1985 through 1987, were selected to provide pleasurable reading for high school students. Annotated entries, listed by author, provide the title, publisher, year of publication, length, type: fiction or nonfiction, and are arranged alphabetically under 47 main categories. These include: (1) adventure and survival;…

Books for You: A Booklist for Senior High Students. New Edition.

ERIC Educational Resources Information Center

Gallo, Donald R., Ed.

The books listed in this annotated bibliography, selected to provide pleasurable reading for high school students, are arranged alphabetically by author under 49 main categories, including the following: (1) adventure and survival; (2) animals and pets; (3) archaeology and anthropology; (4) art and architecture; (5) biography and autobiography;…

Reading Materials in Large Print: A Resource Guide. Reference Circular No. 97-02.

ERIC Educational Resources Information Center

Mendle, Gillian, Comp.

This reference circular contains information about large-print materials. Section 1 is an annotated list of selected sources of large-print materials available for purchase or loan. The sources are publishers or distributors, specialized libraries, and associations for persons with visual impairments. Several of these sources also provide general…

Just Do It: Resources for Interpretive Planning

ERIC Educational Resources Information Center

Koepler, Jes

2008-01-01

Now that you have finished reading this journal issue and understand what interpretive planning is and when to apply it, how can you get started and just "do" it? This article provides an annotated list of practical handbooks and internet resources that provide guidelines for museum practitioners to engage in interpretive planning at institutions…

"Twelve Apostles" and a Few Heretics. Historical Paper 1

ERIC Educational Resources Information Center

Shera, Jesse H.

2015-01-01

There is much more to learn from reading the biographical and philosophical writings of leaders in higher education about what education for librarianship was and should be than from the literature of library education itself. This article contains an alphabetical list with annotations of 23 books on exploring the issues and problems of higher…

Manufacturing Math Classes: An Instructional Program Guide for Manufacturing Workers.

ERIC Educational Resources Information Center

McBride, Pamela G.; And Others

This program guide documents a manufacturing job family curriculum that develops competence in generic work force education skills through three courses: Reading Rulers, Charts, and Gauges and Math for Manufacturing Workers I and II. An annotated table of contents lists a brief description of the questions answered in each section. An introduction…

Nuclear Dangers: A Resource Guide for Secondary School Teachers. Teaching Nuclear Issues.

ERIC Educational Resources Information Center

Meier, Paulette; McPherson, Beth

Provided in this guide are annotated lists of teacher and student resources for teaching and learning about nuclear issues in the secondary school. Resources are grouped into five major sections. The first section (background reading for teachers) contains books and articles focusing on nuclear issues (nuclear war; arms race/disarmament; nuclear…

Books for You: A Booklist for Senior High Students. New Edition.

ERIC Educational Resources Information Center

Small, Robert C., Jr., Ed.

The books listed in this annotated bibliography, selected to provide pleasurable reading for high school students, are arranged alphabetically by author under 35 main categories: (1) adventure and adventurers; (2) animals; (3) art and architecture; (4) biography; (5) careers and people on the job; (6) cars and airplanes; (7) great books that are…

Political Tides in the Arab World. Headline Series No. 296

ERIC Educational Resources Information Center

Muslih, Muhammad; Norton, Augustus Richard

This booklet examines the post-Persian Gulf War Middle East and the reconfiguration of political reality. Six chapters discuss: the Arab crisis; Iraq's invasion of Kuwait; the Arab systems of government; new political alignments; windows of opportunity; and building on the Gulf victory. An annotated reading list consisting of 22 items is attached.…

THE NEGRO IN SCHOOLROOM LITERATURE, RESOURCE MATERIALS FOR THE TEACHER OF KINDERGARTEN THROUGH THE SIXTH GRADE. 2D ED.

ERIC Educational Resources Information Center

KOBLITZ, MINNIE W.

THIS ANNOTATED BIBLIOGRAPHY LISTS MORE THAN 250 BOOKS, CURRENT TO SEPTEMBER 1, 1966, WHICH CONTRIBUTE TO THE UNDERSTANDING AND APPRECIATION OF THE NEGRO HERITAGE. THESE RESOURCE MATERIALS, SUITABLE FOR STUDENTS IN KINDERGARTEN THROUGH SIXTH GRADE, ARE ARRANGED ACCORDING TO READING LEVEL. THERE ARE SECTIONS CONTAINING ADDITIONAL SOURCE MATERIALS…

Pour Adolescent et Adulte, Francais Langue Etrangere, Niveau 1 (French as a Foreign Language, Level 1, for Adolescents and Adults)

ERIC Educational Resources Information Center

Gibert, Pierre

1975-01-01

This annotated bibliography lists dictionaries and reading materials including stories and legends, biographies, works relating to cinema, theatre and French civilization, magazines, and educational activities and games for introductory instruction of French as a foreign language to adults and adolescents. (Text is in French.) (CLK)

Children's Books about the Holocaust. A Selective Annotated Bibliography.

ERIC Educational Resources Information Center

Rudin, Claire, Comp.

This document describes what reading should be in a Holocaust library for children. Considering the graphic and violent events of the Holocaust, this list of books for children presents the Holocaust in a way that satisfies the need for some gentleness of treatment, while still engaging interest and presenting facts accurately, to provide a list…

What Shall Our Children Read? A Selected Bibliography of American Indian Literature for Young People.

ERIC Educational Resources Information Center

Blank, Ruth

The 178 titles in the annotated bibliography represent a variety of American Indian and Alaska Native topics and literature from 1953 to 1980 (primarily the 1970's). Serving as a guide for teachers and Native American parents, the bibliography alphabetically lists published material non-stereotypic of American Indians and suitable for teaching…

Teaching the Sociology of Popular Music with the Help of Feature Films: A Selected and Annotated Videography.

ERIC Educational Resources Information Center

Groce, Stephen B.

1992-01-01

Discusses the use of feature films for courses on popular culture and the sociology of popular music. Suggests that films can illustrate topics such as culture, social groups, deviant behavior, racism, and sexism. Lists a selection of Hollywood feature films with accompanying readings and students' evaluations. (DK)

Applications of Artificial Intelligence (AI) and Expert Systems for Online Searching.

ERIC Educational Resources Information Center

Hawkins, Donald T.

1988-01-01

Discussion of the online searching process identifies the formulation of a search strategy as the major problem area for users of online systems. Artificial intelligence is suggested as a solution to this problem, and several expert systems for information retrieval are described. An annotated list of 24 items for further reading is included. (23…

Family Literacy: Community & Family Life Materials. A Guide to Recent and Recommended Books.

ERIC Educational Resources Information Center

Lane, Martha A.; And Others

The books in this family literacy guide are listed alphabetically by title in each of three sections. The author, publisher, copyright date, reading level, type of book, number of pages, International Standard Book Number, price, and annotation comprise each entry. The topic of the family contains 11 titles: "Angry Feelings"; "Beginning with…

Films with Few Words; A Multi-Sensory Approach to Writing, Reading, and Discussion.

ERIC Educational Resources Information Center

Sohn, David A.

1969-01-01

Concerned with the need to offer high school students organized practice in observing visual stimuli and writing about what they see, the author offers an annotated list of short films with little dialogue and narration that can conveniently be used in the classroom for teaching observation through the moving image. (LS)

ORFer--retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files.

PubMed

Büssow, Konrad; Hoffmann, Steve; Sievert, Volker

2002-12-19

Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite of the cloning and recombinant expression of these proteins. A Java program was developed for retrieval of protein and nucleic acid sequences and annotations from NCBI GenBank, using the XML sequence format. Annotations retrieved by ORFer include sequence name, organism and also the completeness of the sequence. The program has a graphical user interface, although it can be used in a non-interactive mode. For protein sequences, the program also extracts the open reading frame sequence, if available, and checks its correct translation. ORFer accepts user input in the form of single or lists of GenBank GI identifiers or accession numbers. It can be used to extract complete sets of open reading frames and protein sequences from any kind of GenBank sequence entry, including complete genomes or chromosomes. Sequences are either stored with their features in a relational database or can be exported as text files in Fasta or tabulator delimited format. The ORFer program is freely available at http://www.proteinstrukturfabrik.de/orfer. The ORFer program allows for fast retrieval of DNA sequences, protein sequences and their open reading frames and sequence annotations from GenBank. Furthermore, storage of sequences and features in a relational database is supported. Such a database can supplement a laboratory information system (LIMS) with appropriate sequence information.

An Annotated Bibliography of Materials for Teaching Advanced Written Skills in English as a Second Language.

ERIC Educational Resources Information Center

Macha, Dyne; Angelis, Paul

This bibliography includes textbooks useful for the teaching of written skills in English as a second language to college and university students. The major emphasis of the texts listed is the teaching of writing but some contain material on reading as well. The first section contains only texts designed specifically for second language use. The…

Using social science to understand and improve wildland fire organizations: an annotated reading list

Treesearch

Gregory Larson; Vita Wright; Cade Spaulding; Kelly Rossetto; Georgi Rausch; Andrea Richards; Stephanie Durnford

2007-01-01

The wildland fire community has spent the past decade trying to understand and account for the role of human factors in wildland fire organizations. Social research that is relevant to managing fire organizations can be found in disciplines such as social psychology, management, and communication. However, such research has been published primarily for scientific and...

Linking wilderness research and management-volume 1. Wilderness fire restoration and management: an annotated reading list

Treesearch

Marion Hourdequin; Vita Wright

2001-01-01

The Wilderness Act of 1964 designates wilderness areas as places where natural conditions prevail and humans leave landscapes untrammeled. Managers of wilderness and similarly protected areas have a mandate to maintain wildland fire as a natural ecological process. However, because fire suppression has dominated Federal land management for most of the past century, the...

Linking wilderness research and management-volume 2. Defining, managing, and monitoring wilderness visitor experiences: an annotated reading list

Treesearch

Annette Puttkammer; Vita Wright

2001-01-01

Opportunities for unique visitor experiences are among the defining attributes of wilderness. In order to understand and protect these experiences, natural and social scientists have pursued an ever-expanding program of wildland recreation research. While much of the early research sought to identify simple relationships between setting attributes and visitor...

Growing Up in a Nuclear World: A Resource Guide for Elementary School Teachers. Teaching Nuclear Issues.

ERIC Educational Resources Information Center

Meier, Paulette; McPherson, Beth

Provided in this guide are annotated lists of teacher and student resources for teaching and learning about nuclear issues in the elementary/junior high school (grades K-8). Resources are grouped into five major sections. The first section (background reading for teachers) contains books and articles focusing on nuclear issues (nuclear war; arms…

Forecasting Reading Anxiety for Promoting English-Language Reading Performance Based on Reading Annotation Behavior

ERIC Educational Resources Information Center

Chen, Chih-Ming; Wang, Jung-Ying; Chen, Yong-Ting; Wu, Jhih-Hao

2016-01-01

To reduce effectively the reading anxiety of learners while reading English articles, a C4.5 decision tree, a widely used data mining technique, was used to develop a personalized reading anxiety prediction model (PRAPM) based on individual learners' reading annotation behavior in a collaborative digital reading annotation system (CDRAS). In…

PathFinder: reconstruction and dynamic visualization of metabolic pathways.

PubMed

Goesmann, Alexander; Haubrock, Martin; Meyer, Folker; Kalinowski, Jörn; Giegerich, Robert

2002-01-01

Beyond methods for a gene-wise annotation and analysis of sequenced genomes new automated methods for functional analysis on a higher level are needed. The identification of realized metabolic pathways provides valuable information on gene expression and regulation. Detection of incomplete pathways helps to improve a constantly evolving genome annotation or discover alternative biochemical pathways. To utilize automated genome analysis on the level of metabolic pathways new methods for the dynamic representation and visualization of pathways are needed. PathFinder is a tool for the dynamic visualization of metabolic pathways based on annotation data. Pathways are represented as directed acyclic graphs, graph layout algorithms accomplish the dynamic drawing and visualization of the metabolic maps. A more detailed analysis of the input data on the level of biochemical pathways helps to identify genes and detect improper parts of annotations. As an Relational Database Management System (RDBMS) based internet application PathFinder reads a list of EC-numbers or a given annotation in EMBL- or Genbank-format and dynamically generates pathway graphs.

Linking wilderness research and management-volume 5. Understanding and managing backcountry recreation impacts on terrestrial wildlife: an annotated reading list

Treesearch

Douglas Tempel; Vita Wright; Janet Neilson; Tammy Mildenstein

2008-01-01

Increasing levels of recreational use in wilderness, backcountry, and roadless areas has the potential to impact wildlife species, including those that depend on these protected areas for survival. Wildlife and wilderness managers will be more successful at reducing these impacts if they understand the potential impacts, factors affecting the magnitude of impacts, and...

From Thunder Rose to when Marian Sang . . . Behold the Power of African American Female Characters! Reading to Encourage Self-Worth, Inform/Inspire, and Bring Pleasure

ERIC Educational Resources Information Center

Brinson, Sabrina A.

2009-01-01

Stories are important teaching tools. To ensure that young children are informed and experience more than a handful of African American women and girls' stories and authors, this article showcases notable and little-known accomplishments of exceptional women, real and imaginary. Brinson offers an annotated list of children's literature, fiction…

The Special Relationship: The United States as the British Have Seen It. A Selective Reading List by British Writers.

ERIC Educational Resources Information Center

Wright, Esmond, Comp.

The selective annotated bibliography is a reader's guide to aspects of the American past and present as seen by British writers since the 1940s. Approximately 250 entries provide a sampling of how British students of United States studies perceive the New World. Childrens books are omitted. Nine categories are organized alphabetically by author.…

The Use of Online Annotations in Reading Instruction and Its Impact on Students' Reading Progress and Processes

ERIC Educational Resources Information Center

Yeh, Hui-Chin; Hung, Hsiu-Ting; Chiang, Yu-Hsin

2017-01-01

Studies suggest that the incorporation of online annotations in reading instruction can improve students' reading comprehension. However, little research has addressed how students use online annotations in their reading processes and how such use may lead to their improvement. This study thus adopted Reciprocal Teaching (RT) as an instructional…

An Annotated Reading List for Concurrent Engineering

DTIC Science & Technology

1989-07-01

The seven tools are sometimes referred to as the seven old tools.) -9- Ishikawa , Kaoru , What is Total Quality Control? The Japanese Way, Prentice-Hall...some solutions. * Ishikawa (1982) presents a practical guide (with easy to use tools) for implementing qual- ity control at the working level...study of, :-, ieering for the last two years. Is..ikawa, Kaoru , Guide to Quality Control, Kraus International Publications, White Plains, NY, 1982. The

Linking wilderness research and management-volume 4. Understanding and managing invasive plants in wilderness and other natural areas: an annotated reading list

Treesearch

Sophie Osborn; Vita Wright; Brett Walker; Amy Cilimburg; Alison Perkins

2002-01-01

Nonnative invasive plants are altering ecosystems around the world with alarming speed. They outcompete native plants and ultimately change the composition and function of the ecosystems they invade. This poses a particular problem in wilderness and other natural areas that are set aside to maintain natural conditions. Wilderness managers are not only faced with the...

Hypertext Annotation: Effects of Presentation Formats and Learner Proficiency on Reading Comprehension and Vocabulary Learning in Foreign Languages

ERIC Educational Resources Information Center

Chen, I-Jung; Yen, Jung-Chuan

2013-01-01

This study extends current knowledge by exploring the effect of different annotation formats, namely in-text annotation, glossary annotation, and pop-up annotation, on hypertext reading comprehension in a foreign language and vocabulary acquisition across student proficiencies. User attitudes toward the annotation presentation were also…

Perceived Usefulness of a Strategy-Based Peer Annotation System for Improving Academic Reading Comprehension

ERIC Educational Resources Information Center

Chen, I-Jung; Chen, Wen-Chun

2016-01-01

This study examines the enhancing effect of peer annotation on the academic English reading of nonnative-Englishspeaking graduate students. To facilitate peer collaboration, the present study included the development of a strategybased online reading system. Through peer annotation, the students not only achieved enhanced reading comprehension but…

An efficient annotation and gene-expression derivation tool for Illumina Solexa datasets.

PubMed

Hosseini, Parsa; Tremblay, Arianne; Matthews, Benjamin F; Alkharouf, Nadim W

2010-07-02

The data produced by an Illumina flow cell with all eight lanes occupied, produces well over a terabyte worth of images with gigabytes of reads following sequence alignment. The ability to translate such reads into meaningful annotation is therefore of great concern and importance. Very easily, one can get flooded with such a great volume of textual, unannotated data irrespective of read quality or size. CASAVA, a optional analysis tool for Illumina sequencing experiments, enables the ability to understand INDEL detection, SNP information, and allele calling. To not only extract from such analysis, a measure of gene expression in the form of tag-counts, but furthermore to annotate such reads is therefore of significant value. We developed TASE (Tag counting and Analysis of Solexa Experiments), a rapid tag-counting and annotation software tool specifically designed for Illumina CASAVA sequencing datasets. Developed in Java and deployed using jTDS JDBC driver and a SQL Server backend, TASE provides an extremely fast means of calculating gene expression through tag-counts while annotating sequenced reads with the gene's presumed function, from any given CASAVA-build. Such a build is generated for both DNA and RNA sequencing. Analysis is broken into two distinct components: DNA sequence or read concatenation, followed by tag-counting and annotation. The end result produces output containing the homology-based functional annotation and respective gene expression measure signifying how many times sequenced reads were found within the genomic ranges of functional annotations. TASE is a powerful tool to facilitate the process of annotating a given Illumina Solexa sequencing dataset. Our results indicate that both homology-based annotation and tag-count analysis are achieved in very efficient times, providing researchers to delve deep in a given CASAVA-build and maximize information extraction from a sequencing dataset. TASE is specially designed to translate sequence data in a CASAVA-build into functional annotations while producing corresponding gene expression measurements. Achieving such analysis is executed in an ultrafast and highly efficient manner, whether the analysis be a single-read or paired-end sequencing experiment. TASE is a user-friendly and freely available application, allowing rapid analysis and annotation of any given Illumina Solexa sequencing dataset with ease.

Elementary Health: Authorized Resources Annotated List.

ERIC Educational Resources Information Center

Alberta Dept. of Education, Edmonton. Curriculum Standards Branch.

This comprehensive, annotated resource list is designed to assist in selecting resources authorized by the Alberta (Canada) Education Department for the elementary health classroom (Grades 1-6). Within each grade and topic, annotated entries for basic learning resources are listed, followed by support learning resources and authorized teaching…

An efficient annotation and gene-expression derivation tool for Illumina Solexa datasets

PubMed Central

2010-01-01

Background The data produced by an Illumina flow cell with all eight lanes occupied, produces well over a terabyte worth of images with gigabytes of reads following sequence alignment. The ability to translate such reads into meaningful annotation is therefore of great concern and importance. Very easily, one can get flooded with such a great volume of textual, unannotated data irrespective of read quality or size. CASAVA, a optional analysis tool for Illumina sequencing experiments, enables the ability to understand INDEL detection, SNP information, and allele calling. To not only extract from such analysis, a measure of gene expression in the form of tag-counts, but furthermore to annotate such reads is therefore of significant value. Findings We developed TASE (Tag counting and Analysis of Solexa Experiments), a rapid tag-counting and annotation software tool specifically designed for Illumina CASAVA sequencing datasets. Developed in Java and deployed using jTDS JDBC driver and a SQL Server backend, TASE provides an extremely fast means of calculating gene expression through tag-counts while annotating sequenced reads with the gene's presumed function, from any given CASAVA-build. Such a build is generated for both DNA and RNA sequencing. Analysis is broken into two distinct components: DNA sequence or read concatenation, followed by tag-counting and annotation. The end result produces output containing the homology-based functional annotation and respective gene expression measure signifying how many times sequenced reads were found within the genomic ranges of functional annotations. Conclusions TASE is a powerful tool to facilitate the process of annotating a given Illumina Solexa sequencing dataset. Our results indicate that both homology-based annotation and tag-count analysis are achieved in very efficient times, providing researchers to delve deep in a given CASAVA-build and maximize information extraction from a sequencing dataset. TASE is specially designed to translate sequence data in a CASAVA-build into functional annotations while producing corresponding gene expression measurements. Achieving such analysis is executed in an ultrafast and highly efficient manner, whether the analysis be a single-read or paired-end sequencing experiment. TASE is a user-friendly and freely available application, allowing rapid analysis and annotation of any given Illumina Solexa sequencing dataset with ease. PMID:20598141

Libros En Espanol: An Annotated List of Children's Books in Spanish.

ERIC Educational Resources Information Center

Conwell, Mary K., Comp.; Belpre, Pura, Comp.

This annotated list of children's books in Spanish, based on the present collection in the New York Public Library, includes materials published both in the United States and abroad. Annotations are in both English and Spanish. The list is arranged in categories, including picture books for the very young, books for children who are beginning to…

Exploring Metacognitive Strategies and Hypermedia Annotations on Foreign Language Reading

ERIC Educational Resources Information Center

Shang, Hui-Fang

2017-01-01

The effective use of reading strategies has been recognized as an important way to increase reading comprehension in hypermedia environments. The purpose of the study was to explore whether metacognitive strategy use and access to hypermedia annotations facilitated reading comprehension based on English as a foreign language students' proficiency…

Annotation-Based Learner's Personality Modeling in Distance Learning Context

ERIC Educational Resources Information Center

Omheni, Nizar; Kalboussi, Anis; Mazhoud, Omar; Kacem, Ahmed Hadj

2016-01-01

Researchers in distance education are interested in observing and modeling learners' personality profiles, and adapting their learning experiences accordingly. When learners read and interact with their reading materials, they do unselfconscious activities like annotation which may be key feature of their personalities. Annotation activity…

Computing of Learner's Personality Traits Based on Digital Annotations

ERIC Educational Resources Information Center

Omheni, Nizar; Kalboussi, Anis; Mazhoud, Omar; Kacem, Ahmed Hadj

2017-01-01

Researchers in education are interested in modeling of learner's profile and adapt their learning experiences accordingly. When learners read and interact with their reading materials, they do unconscious practices like annotations which may be, a key feature of their personalities. Annotation activity requires readers to be active, to think…

Recognition of Learner's Personality Traits through Digital Annotations in Distance Learning

ERIC Educational Resources Information Center

Omheni, Nizar; Kalboussi, Anis; Mazhoud, Omar; Kacem, Ahmed Hadj

2017-01-01

Researchers in distance education are interested in observing and modelling of learner's personality profile, and adapting their learning experiences accordingly. When learners read and interact with their reading materials, they do unselfconscious activities like annotation which may be a key feature of their personalities. Annotation activity…

MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics.

PubMed

Pandey, Ram Vinay; Pabinger, Stephan; Kriegner, Albert; Weinhäusel, Andreas

2016-01-01

Traditional Sanger sequencing as well as Next-Generation Sequencing have been used for the identification of disease causing mutations in human molecular research. The majority of currently available tools are developed for research and explorative purposes and often do not provide a complete, efficient, one-stop solution. As the focus of currently developed tools is mainly on NGS data analysis, no integrative solution for the analysis of Sanger data is provided and consequently a one-stop solution to analyze reads from both sequencing platforms is not available. We have therefore developed a new pipeline called MutAid to analyze and interpret raw sequencing data produced by Sanger or several NGS sequencing platforms. It performs format conversion, base calling, quality trimming, filtering, read mapping, variant calling, variant annotation and analysis of Sanger and NGS data under a single platform. It is capable of analyzing reads from multiple patients in a single run to create a list of potential disease causing base substitutions as well as insertions and deletions. MutAid has been developed for expert and non-expert users and supports four sequencing platforms including Sanger, Illumina, 454 and Ion Torrent. Furthermore, for NGS data analysis, five read mappers including BWA, TMAP, Bowtie, Bowtie2 and GSNAP and four variant callers including GATK-HaplotypeCaller, SAMTOOLS, Freebayes and VarScan2 pipelines are supported. MutAid is freely available at https://sourceforge.net/projects/mutaid.

MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics

PubMed Central

Pandey, Ram Vinay; Pabinger, Stephan; Kriegner, Albert; Weinhäusel, Andreas

2016-01-01

Traditional Sanger sequencing as well as Next-Generation Sequencing have been used for the identification of disease causing mutations in human molecular research. The majority of currently available tools are developed for research and explorative purposes and often do not provide a complete, efficient, one-stop solution. As the focus of currently developed tools is mainly on NGS data analysis, no integrative solution for the analysis of Sanger data is provided and consequently a one-stop solution to analyze reads from both sequencing platforms is not available. We have therefore developed a new pipeline called MutAid to analyze and interpret raw sequencing data produced by Sanger or several NGS sequencing platforms. It performs format conversion, base calling, quality trimming, filtering, read mapping, variant calling, variant annotation and analysis of Sanger and NGS data under a single platform. It is capable of analyzing reads from multiple patients in a single run to create a list of potential disease causing base substitutions as well as insertions and deletions. MutAid has been developed for expert and non-expert users and supports four sequencing platforms including Sanger, Illumina, 454 and Ion Torrent. Furthermore, for NGS data analysis, five read mappers including BWA, TMAP, Bowtie, Bowtie2 and GSNAP and four variant callers including GATK-HaplotypeCaller, SAMTOOLS, Freebayes and VarScan2 pipelines are supported. MutAid is freely available at https://sourceforge.net/projects/mutaid. PMID:26840129

Acquisitions List No. 43.

ERIC Educational Resources Information Center

Planned Parenthood--World Population, New York, NY. Katherine Dexter McCormick Library.

The "Acquisitions List" of demographic books and articles is issued every two months by the Katharine Dexter McCormick Library. Divided into two parts, the first contains a list of books most recently acquired by the Library, each one annotated and also marked with the Library call number. The second part consists of a list of annotated articles,…

Acquisitions List No. 42.

ERIC Educational Resources Information Center

Planned Parenthood--World Population, New York, NY. Katherine Dexter McCormick Library.

The "Acquisitions List" of demographic books and articles is issued every two months by the Katharine Dexter McCormick Library. Divided into two parts, the first contains a list of books most recently acquired by the Library, each one annotated and also marked with the Library call number. The second part consists of a list of annotated articles,…

Reading Actively Online: An Exploratory Investigation of Online Annotation Tools for Inquiry Learning

ERIC Educational Resources Information Center

Lu, Jingyan; Deng, Liping

2012-01-01

This study seeks to design and facilitate active reading among secondary school students with an online annotation tool--Diigo. Two classes of different academic performance levels were recruited to examine their annotation behavior and perceptions of Diigo. We wanted to determine whether the two classes differed in how they used Diigo; how they…

Homepage

Science.gov Websites

Reading List Chief of Staff of the Air Force Professional Reading List Menu + Leadership Gateway Force Archives Reading List 2016 Reading List 2015 Reading List 2014 Reading List 2013 Reading List 2012 Reading List 2011 Reading List 2010 Reading List 2009 Reading List 2008 Reading List 2007 Resources Site

Acquisitions List Number 38, August-September 1971.

ERIC Educational Resources Information Center

Planned Parenthood--World Population, New York, NY. Katherine Dexter McCormick Library.

The "Acquisitions List" of demographic books and articles is issued every two months by the Katharine Dexter McCormick Library. Divided into two parts, the first contains a list of books most recently acquired by the Library, each one annotated and also marked with the Library call number. The second part consists of a list of annotated articles,…

Acquisitions List No. 36, April-May 1971.

ERIC Educational Resources Information Center

Planned Parenthood--World Population, New York, NY. Katherine Dexter McCormick Library.

The"Acquisitions List" of demographic books and aritcles is issued every two months by the Katharine Dexter McCormick Library. Divided into two parts, the first contains a list of books most recently acquired by the library, each one annotated and also marked with the Library call number. The second part consists of a list of annotated articles,…

Acquisitions List No. 41, January 1972.

ERIC Educational Resources Information Center

Planned Parenthood--World Population, New York, NY. Katherine Dexter McCormick Library.

The Acquisitions List of demographic books and articles is issued every two months by the Katherine Dexter-McCormick Library. Divided into two parts, the first contains a list of books most recently acquired by the Library, each one annotated and also marked with the Library call number. The second part consists of a list of annotated articles,…

Acquisitions List No. 37, June-July 1971.

ERIC Educational Resources Information Center

Planned Parenthood--World Population, New York, NY. Katherine Dexter McCormick Library.

The Acquisitions List of demographic books and articles is issued every two months by the Katharine Dexter McCormick Library. Divided into two parts, the first contains a list of books most recently acquired by the Library, each one annotated and also marked with the Library call number. The second part consists of a list of annotated articles,…

Acquisitions List No. 40, November-December 1971.

ERIC Educational Resources Information Center

Planned Parenthood--World Population, New York, NY. Katherine Dexter McCormick Library.

The Acquisitions List of demographic books and articles is issued every two months by the Katharine Dexter McCormick Library. Divided into two parts, the first contains a list of books most recently acquired by the Library, each one annotated and also marked with the Library call number. The second part consists of a list of annotated articles,…

Acquisitions List No. 39, October 1971.

ERIC Educational Resources Information Center

Planned Parenthood--World Population, New York, NY. Katherine Dexter McCormick Library.

The Acquisitions List of demographic books and articles is issued every two months by the Katharine Dexter McCormick Library. Divided into two parts, the first contains a list of books most recently acquired by the Library, each one annotated and also marked with the Library call number. The second part consists of a list of annotated articles,…

AF family shares experience with child's autism > U.S. Air Force >

Science.gov Websites

Reading List 2017 CSAF Reading List 2016 CSAF Reading List 2015 CSAF Reading List 2014 CSAF Reading List 2013 CSAF Reading List 2012 CSAF Reading List 2011 CSAF Reading List 2010 CSAF Reading List 2009 CSAF Reading List 2008 CSAF Reading List 2007 CSAF Reading List 2006 CSAF Reading List 50 Years of the CMSAF

Sexuality and Family Life Education: An Annotated Bibliography of Curricula for Sale.

ERIC Educational Resources Information Center

Hallingby, Leigh

1985-01-01

This document contains an annotated bibliography of sexuality and family life education curricula which are available for sale. The curricula are listed without evaluation and, because of topic overlap, specific content areas covered in each curriculum are not listed in the annotations. It is noted, however, that topics often covered include…

Swine transcriptome characterization by combined Iso-Seq and RNA-seq for annotating the emerging long read-based reference genome

USDA-ARS?s Scientific Manuscript database

PacBio long-read sequencing technology is increasingly popular in genome sequence assembly and transcriptome cataloguing. Recently, a new-generation pig reference genome was assembled based on long reads from this technology. To finely annotate this genome assembly, transcriptomes of nine tissues fr...

Home Economics: An Annotated Bibliography.

ERIC Educational Resources Information Center

Beasley, Georgia Blair, Comp.

This annotated bibliography is an attempt to provide a fairly extensive listing of available resource materials related to home economics. It does not attempt to include materials listed in readily available catalogs produced by commercial sources, government agencies, or other agencies which normally supply their lists to teachers. The…

Consumer Education Materials: An Annotated List. Revised Edition.

ERIC Educational Resources Information Center

Alberta Consumer and Corporate Affairs, Edmonton. Resource Centre.

This annotated list is intended to help K-12 librarians and teachers identify consumer education materials. All materials listed are in the Alberta Consumer and Corporate Affairs Resource Centre, Edmonton, Alberta, Canada. The materials treat a wide variety of topics including advertising, purchasing, budgets, business education, conservation of…

High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.

PubMed

Lagarde, Julien; Uszczynska-Ratajczak, Barbara; Carbonell, Silvia; Pérez-Lluch, Sílvia; Abad, Amaya; Davis, Carrie; Gingeras, Thomas R; Frankish, Adam; Harrow, Jennifer; Guigo, Roderic; Johnson, Rory

2017-12-01

Accurate annotation of genes and their transcripts is a foundation of genomics, but currently no annotation technique combines throughput and accuracy. As a result, reference gene collections remain incomplete-many gene models are fragmentary, and thousands more remain uncataloged, particularly for long noncoding RNAs (lncRNAs). To accelerate lncRNA annotation, the GENCODE consortium has developed RNA Capture Long Seq (CLS), which combines targeted RNA capture with third-generation long-read sequencing. Here we present an experimental reannotation of the GENCODE intergenic lncRNA populations in matched human and mouse tissues that resulted in novel transcript models for 3,574 and 561 gene loci, respectively. CLS approximately doubled the annotated complexity of targeted loci, outperforming existing short-read techniques. Full-length transcript models produced by CLS enabled us to definitively characterize the genomic features of lncRNAs, including promoter and gene structure, and protein-coding potential. Thus, CLS removes a long-standing bottleneck in transcriptome annotation and generates manual-quality full-length transcript models at high-throughput scales.

RADIOISOTOPE TECHNIQUES FOR INSTRUCTION IN THE BIOLOGICAL SCIENCES, A LIST OF ANNOTATED REFERENCES.

ERIC Educational Resources Information Center

HURLBURT, EVELYN M.

REFERENCES TO BIOLOGICAL EXPERIMENTS THAT EMPHASIZE THE USE OF RADIOISOTOPES AS TRACERS ARE INCLUDED IN THIS ANNOTATED BIBLIOGRAPHY. MATERIALS INCLUDED ARE CONSIDERED TO BE READILY AVAILABLE AND WERE PUBLISHED AFTER 1960. SECTION I IS COMPOSED OF SELECTED SOURCES. ENTRIES INCLUDE (1) COMPLETE CITATIONS, (2) A BRIEF ANNOTATION, AND (3) LISTS OF…

Annotations of Early Childhood Assessment Instruments.

ERIC Educational Resources Information Center

Texas Education Agency, Austin.

An annotated listing of selected instruments which may be appropriate for the young child who appears to be handicapped and who may be placed in an early childhood unit for the handicapped is provided. The list is not comprehensive nor does it contain annotations from all companies which produce this type of material. It is offered to apprise…

News

Science.gov Websites

Professors Senior Mentor Biographies Fact Sheets Commander's Call Topics CCT Archive CSAF Reading List 2017 CSAF Reading List 2016 CSAF Reading List 2015 CSAF Reading List 2014 CSAF Reading List 2013 CSAF Reading List 2012 CSAF Reading List 2011 CSAF Reading List 2010 CSAF Reading List 2009 CSAF Reading List

Teaching Students To Annotate and Underline Text Effectively--Guidelines and Procedures. College Reading and Learning Assistance Technical Report No. 87-02.

ERIC Educational Resources Information Center

Nist, Sherrie L.

Of all the effective strategies available to college developmental reading students, annotating (noting important ideas or examples in text margins) and underlining have the widest appeal among students and the most practical application in any course. Annotating/underlining serves a dual function: students can isolate key ideas at the time of the…

AF Week in Photos > U.S. Air Force > Article Display

Science.gov Websites

Professors Senior Mentor Biographies Fact Sheets Commander's Call Topics CCT Archive CSAF Reading List 2017 CSAF Reading List 2016 CSAF Reading List 2015 CSAF Reading List 2014 CSAF Reading List 2013 CSAF Reading List 2012 CSAF Reading List 2011 CSAF Reading List 2010 CSAF Reading List 2009 CSAF Reading List

Annotated Bibliography of the Graduate Record Examinations.

ERIC Educational Resources Information Center

Fortna, Richard O.

The Graduate Record Examinations (GRE) bibliography provides an exhaustive list of references to studies adding to the understanding of the development, nature, and use of the test, and is divided into two sections: (1) the first section lists 125 annotated citations that contain research studies on the GRE; (2) the second section lists reviews…

Higher Education Opportunities for Minorities and Women--Annotated Selections. 1989 Edition.

ERIC Educational Resources Information Center

Young, William C., Comp.; Hicks, Edward L., Comp.

Developed to assist parents and students in finding sources of postsecondary financial aid, this annotated listing provides a brief summary of the basic information about a selected list of financial aid sources designed primarily for minority groups and women, or available to all students. The listings provide names and addresses, background…

Your Reading: An Annotated Booklist for Middle School and Junior High. 11th Edition. NCTE Bibliography Series.

ERIC Educational Resources Information Center

Brown, Jean E., Ed.; Stephens, Elaine C., Ed.

Organized around the theme of "challenges," the 11th edition of "Your Reading" offers annotations of more than 1,200 books for young adults. Intended for teachers, librarians, parents, and students, this booklist presents recently published books that can be read for many purposes--for sheer enjoyment of the story, to pique…

Vision/Visual Perception: An Annotated Bibliography.

ERIC Educational Resources Information Center

Weintraub, Sam, Comp.; Cowan, Robert J., Comp.

An update and modification of "Vision-Visual Discrimination" published in 1973, this annotated bibliography contains entries from the annual summaries of research in reading published by the International Reading Association (IRA) since then. The first large section, "Vision," is divided into two subgroups: (1) "Visually…

An Annotated List of Marine Stations Suitable for Field Courses in Carbonate Geology and Tropical Marine Sciences.

ERIC Educational Resources Information Center

Kaplan, Eugene H.

1980-01-01

This is an annotated list of marine field stations suitable for summer study or research in carbonate geology and tropical marine sciences. Thirteen are listed and described in detail. Equipment is discussed and reference is made to research-oriented Caribbean facilities for graduate study or field courses. (Author/SA)

An annotated list of the cicadellidae and fulgoridae of elm

Treesearch

Lester P. Gibson

1973-01-01

This annotated list includes 87 cicadellid and 13 fulgorid entries that were found on and probably feed on elm to some extent. Thirteen of the cicadellid species listed are known vectors of virus or mycoplasmalike diseases of plants. Also, the following 18 cicadellid genera contain known vectors of virus or mycoplasmalike diseases of plants: Aceratagallia...

Measuring Attitudes Toward Reading. An Annotated ERIC Bibliography.

ERIC Educational Resources Information Center

Hahn, Christine T., Comp.

This 30-item annotated bibliography provides access to information concerning the development and use of tests and procedures for evaluating student attitudes toward reading. Based upon a computer search of five data bases--Educational Resources Information Center (ERIC), Psychological Abstracts, Exceptional Child Education Abstracts, Sociological…

An Annotated Bibliography of Research on Reading and Adults Learning English as a Second Language.

ERIC Educational Resources Information Center

Burt, Miriam, Comp.; Florez, MaryAnn, Comp.; Terrill, Lynda, Comp.; Van Duzer, Carol, Comp.

This annotated bibliography contains 27 references regarding research on reading and adults learning English as a Second Language (ESL). None of the resources are more than 10 years old. (Adjunct ERIC Clearinghouse for ESL Literacy Education) (KFT)

Freedom of Speech: A Selected, Annotated Basic Bibliography.

ERIC Educational Resources Information Center

Tedford, Thomas L.

Restricted to books on freedom of speech, this annotated bibliography offers a list of 38 references pertinent to the subject. Also included is a list of 18 ERIC documents on freedom of speech, and information on how to order them. (JC)

miRBase: integrating microRNA annotation and deep-sequencing data.

PubMed

Kozomara, Ana; Griffiths-Jones, Sam

2011-01-01

miRBase is the primary online repository for all microRNA sequences and annotation. The current release (miRBase 16) contains over 15,000 microRNA gene loci in over 140 species, and over 17,000 distinct mature microRNA sequences. Deep-sequencing technologies have delivered a sharp rise in the rate of novel microRNA discovery. We have mapped reads from short RNA deep-sequencing experiments to microRNAs in miRBase and developed web interfaces to view these mappings. The user can view all read data associated with a given microRNA annotation, filter reads by experiment and count, and search for microRNAs by tissue- and stage-specific expression. These data can be used as a proxy for relative expression levels of microRNA sequences, provide detailed evidence for microRNA annotations and alternative isoforms of mature microRNAs, and allow us to revisit previous annotations. miRBase is available online at: http://www.mirbase.org/.

Annotations and the Collaborative Digital Library: Effects of an Aligned Annotation Interface on Student Argumentation and Reading Strategies

ERIC Educational Resources Information Center

Wolfe, Joanna

2008-01-01

Recent research on annotation interfaces provides provocative evidence that anchored, annotation-based discussion environments may lead to better conversations about a text. However, annotation interfaces raise complicated tradeoffs regarding screen real estate and positioning. It is argued that solving this screen real estate problem requires…

Long-read sequencing data analysis for yeasts.

PubMed

Yue, Jia-Xing; Liti, Gianni

2018-06-01

Long-read sequencing technologies have become increasingly popular due to their strengths in resolving complex genomic regions. As a leading model organism with small genome size and great biotechnological importance, the budding yeast Saccharomyces cerevisiae has many isolates currently being sequenced with long reads. However, analyzing long-read sequencing data to produce high-quality genome assembly and annotation remains challenging. Here, we present a modular computational framework named long-read sequencing data analysis for yeasts (LRSDAY), the first one-stop solution that streamlines this process. Starting from the raw sequencing reads, LRSDAY can produce chromosome-level genome assembly and comprehensive genome annotation in a highly automated manner with minimal manual intervention, which is not possible using any alternative tool available to date. The annotated genomic features include centromeres, protein-coding genes, tRNAs, transposable elements (TEs), and telomere-associated elements. Although tailored for S. cerevisiae, we designed LRSDAY to be highly modular and customizable, making it adaptable to virtually any eukaryotic organism. When applying LRSDAY to an S. cerevisiae strain, it takes ∼41 h to generate a complete and well-annotated genome from ∼100× Pacific Biosciences (PacBio) running the basic workflow with four threads. Basic experience working within the Linux command-line environment is recommended for carrying out the analysis using LRSDAY.

Unbiased Taxonomic Annotation of Metagenomic Samples

PubMed Central

Fosso, Bruno; Pesole, Graziano; Rosselló, Francesc

2018-01-01

Abstract The classification of reads from a metagenomic sample using a reference taxonomy is usually based on first mapping the reads to the reference sequences and then classifying each read at a node under the lowest common ancestor of the candidate sequences in the reference taxonomy with the least classification error. However, this taxonomic annotation can be biased by an imbalanced taxonomy and also by the presence of multiple nodes in the taxonomy with the least classification error for a given read. In this article, we show that the Rand index is a better indicator of classification error than the often used area under the receiver operating characteristic (ROC) curve and F-measure for both balanced and imbalanced reference taxonomies, and we also address the second source of bias by reducing the taxonomic annotation problem for a whole metagenomic sample to a set cover problem, for which a logarithmic approximation can be obtained in linear time and an exact solution can be obtained by integer linear programming. Experimental results with a proof-of-concept implementation of the set cover approach to taxonomic annotation in a next release of the TANGO software show that the set cover approach further reduces ambiguity in the taxonomic annotation obtained with TANGO without distorting the relative abundance profile of the metagenomic sample. PMID:29028181

On the Benefits of Multimodal Annotations for Vocabulary Uptake from Reading

ERIC Educational Resources Information Center

Boers, Frank; Warren, Paul; Grimshaw, Gina; Siyanova-Chanturia, Anna

2017-01-01

Several research articles published in the realm of Computer Assisted Language Learning (CALL) have reported evidence of the benefits of multimodal annotations, i.e. the provision of pictorial as well as verbal clarifications, for vocabulary uptake from reading. Almost invariably, these publications account for the observed benefits with reference…

Using Multimedia Vocabulary Annotations in L2 Reading and Listening Activities

ERIC Educational Resources Information Center

Jing Xu

2010-01-01

This paper reviews the role of multimedia vocabulary annotation (MVA) in facilitating second language (L2) reading and listening activities. It examines the multimedia learning and multimedia language learning theories that underlie the MVA research, synthesizes the findings on MVA in the last decade, and identifies three underresearched areas on…

Minding the Gap: Annotation as Preparation for Discussion

ERIC Educational Resources Information Center

Feito, Jose Alfonso; Donahue, Patricia

2008-01-01

This research project examines classroom discussion in its relationship to reading as made visible through the practice of textual annotation. In order to develop a rich description of student reading/discussion processes, we targeted multiple undergraduate seminars at a liberal arts college as they encountered the first two Acts of Shakespeare's…

Invertebrates of The H.J. Andrews Experimental Forest, Western Cascade Range, Oregon. V: An Annotated List of Insects and Other Arthropods

Treesearch

Gary L. Parson; Gerasimos Cassis; Andrew R. Moldenke; John D. Lattin; Norman H. Anderson; Jeffrey C Miller; Paul Hammond; Timothy D. Schowalter

1991-01-01

An annotated list of species of insects and other arthropods that have been collected and studies on the H.J. Andrews Experimental forest, western Cascade Range, Oregon. The list includes 459 families, 2,096 genera, and 3,402 species. All species have been authoritatively identified by more than 100 specialists. Information is included on habitat type, functional group...

Invertebrates of The H.J. Andrews Experimental Forest, western Cascade Range, Oregon. V: An annotated list of insects and other arthropods.

Treesearch

Gary L. Parson; Gerasimos Cassis; Andrew R. Moldenke; John D. Lattin; Norman H. Anderson; Jeffrey C Miller; Paul Hammond; Timothy D. Schowalter

1991-01-01

An annotated list of species of insects and other arthropods that have been collected and studies on the H.J. Andrews Experimental forest, western Cascade Range, Oregon. The list includes 459 families, 2,096 genera, and 3,402 species. All species have been authoritatively identified by more than 100 specialists. Information is included on habitat type, functional group...

Comparison of methods for library construction and short read annotation of shellfish viral metagenomes.

PubMed

Wei, Hong-Ying; Huang, Sheng; Wang, Jiang-Yong; Gao, Fang; Jiang, Jing-Zhe

2018-03-01

The emergence and widespread use of high-throughput sequencing technologies have promoted metagenomic studies on environmental or animal samples. Library construction for metagenome sequencing and annotation of the produced sequence reads are important steps in such studies and influence the quality of metagenomic data. In this study, we collected some marine mollusk samples, such as Crassostrea hongkongensis, Chlamys farreri, and Ruditapes philippinarum, from coastal areas in South China. These samples were divided into two batches to compare two library construction methods for shellfish viral metagenome. Our analysis showed that reverse-transcribing RNA into cDNA and then amplifying it simultaneously with DNA by whole genome amplification (WGA) yielded a larger amount of DNA compared to using only WGA or WTA (whole transcriptome amplification). Moreover, higher quality libraries were obtained by agarose gel extraction rather than with AMPure bead size selection. However, the latter can also provide good results if combined with the adjustment of the filter parameters. This, together with its simplicity, makes it a viable alternative. Finally, we compared three annotation tools (BLAST, DIAMOND, and Taxonomer) and two reference databases (NCBI's NR and Uniprot's Uniref). Considering the limitations of computing resources and data transfer speed, we propose the use of DIAMOND with Uniref for annotating metagenomic short reads as its running speed can guarantee a good annotation rate. This study may serve as a useful reference for selecting methods for Shellfish viral metagenome library construction and read annotation.

Staff Differentiation. An Annotated Bibliography.

ERIC Educational Resources Information Center

Marin County Superintendent of Schools, Corte Madera, CA.

This annotated bibliography reviews selected literature focusing on the concept of staff differentiation. Included are 62 items (dated 1966-1970), along with a list of mailing addresses where copies of individual items can be obtained. Also a list of 31 staff differentiation projects receiving financial assistance from the U.S. Office of Education…

Teacher Aides; An Annotated Bibliography.

ERIC Educational Resources Information Center

Marin County Public Schools, Corte Madera, CA.

This annotated bibliography lists 40 items, published between 1966 and 1971, that have to do with teacher aides. The listing is arranged alphabetically by author. In addition to the abstract and standard bibliographic information, addresses where the material can be purchased are often included. The items cited include handbooks, research studies,…

Health Economics Research: An Annotated Bibliography.

ERIC Educational Resources Information Center

Dillard, Carole D.; And Others

This annotated bibliography lists books and journal articles published since 1976 which deal with health economics and which are based on health services research supported by the National Center for Health Services Research (NCHSR). Articles prepared by NCHSR staff are listed as intramural. All other articles cite the NCHSR grant or contract…

Handbook of Reference Sources. Third Edition.

ERIC Educational Resources Information Center

Nichols, Margaret Irby

This third edition of popular and useful reference works, which emphasizes the needs of small libraries, contains 975 annotated entries and lists 201 additional titles (most with bibliographic and order information) in the annotations, representing an expansion of 30 percent over the second edition. The appendix lists 116 basic or core reference…

Exploring the Interface between Christian Faith and Education: An Annotated List of Current Journals

ERIC Educational Resources Information Center

Harkness, Allan G.

2013-01-01

Seventeen academic journals which explore aspects of the interface between the Christian faith and educational concerns, and which are currently available internationally and in English, are listed. Annotations for each journal include publication and editorial details, website access, sponsoring institution, stated focus, educational content…

Resources for Helping Young Children Deal with Death.

ERIC Educational Resources Information Center

Wass, Hannelore

This bibliography contains selected resources (1965-1983) to help parents and teachers assist young children with death-related concerns. Included are materials for adults: an annotated list of books on death (13 citations); a bibliography of articles about children and death from recent literature (50 citations); and an annotated list of…

Building Blocks. An Annotated Bibliography for Single Parent Programming.

ERIC Educational Resources Information Center

Wiley-Thomas, Cheryl, Comp.; Norden, Tamara, Ed.

This booklet lists 645 books, articles, curriculum materials, computer software, and videos that educational professionals can use to develop programs for single parents (especially teen parents). Many of the listings are annotated; all contain information on author, title, publisher name and city, and date of publication or production. The…

WORKSHOPS FOR THE HANDICAPPED, AN ANNOTATED BIBLIOGRAPHY--NO. 3.

ERIC Educational Resources Information Center

PERKINS, DOROTHY C.; AND OTHERS

THESE 126 ANNOTATIONS ARE THE THIRD VOLUME OF A CONTINUING SERIES OF BIBLIOGRAPHIES LISTING ARTICLES APPEARING IN JOURNALS AND CONFERENCE, RESEARCH, AND PROJECT REPORTS. LISTINGS INCLUDE TESTS, TEST RESULTS, STAFF TRAINING PROGRAMS, GUIDES FOR COUNSELORS AND TEACHERS, AND ARCHITECTURAL PLANNING, AND RELATE TO THE MENTALLY RETARDED, EMOTIONALLY…

DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.

PubMed

Nagasaki, Hideki; Mochizuki, Takako; Kodama, Yuichi; Saruhashi, Satoshi; Morizaki, Shota; Sugawara, Hideaki; Ohyanagi, Hajime; Kurata, Nori; Okubo, Kousaku; Takagi, Toshihisa; Kaminuma, Eli; Nakamura, Yasukazu

2013-08-01

High-performance next-generation sequencing (NGS) technologies are advancing genomics and molecular biological research. However, the immense amount of sequence data requires computational skills and suitable hardware resources that are a challenge to molecular biologists. The DNA Data Bank of Japan (DDBJ) of the National Institute of Genetics (NIG) has initiated a cloud computing-based analytical pipeline, the DDBJ Read Annotation Pipeline (DDBJ Pipeline), for a high-throughput annotation of NGS reads. The DDBJ Pipeline offers a user-friendly graphical web interface and processes massive NGS datasets using decentralized processing by NIG supercomputers currently free of charge. The proposed pipeline consists of two analysis components: basic analysis for reference genome mapping and de novo assembly and subsequent high-level analysis of structural and functional annotations. Users may smoothly switch between the two components in the pipeline, facilitating web-based operations on a supercomputer for high-throughput data analysis. Moreover, public NGS reads of the DDBJ Sequence Read Archive located on the same supercomputer can be imported into the pipeline through the input of only an accession number. This proposed pipeline will facilitate research by utilizing unified analytical workflows applied to the NGS data. The DDBJ Pipeline is accessible at http://p.ddbj.nig.ac.jp/.

DDBJ Read Annotation Pipeline: A Cloud Computing-Based Pipeline for High-Throughput Analysis of Next-Generation Sequencing Data

PubMed Central

Nagasaki, Hideki; Mochizuki, Takako; Kodama, Yuichi; Saruhashi, Satoshi; Morizaki, Shota; Sugawara, Hideaki; Ohyanagi, Hajime; Kurata, Nori; Okubo, Kousaku; Takagi, Toshihisa; Kaminuma, Eli; Nakamura, Yasukazu

2013-01-01

High-performance next-generation sequencing (NGS) technologies are advancing genomics and molecular biological research. However, the immense amount of sequence data requires computational skills and suitable hardware resources that are a challenge to molecular biologists. The DNA Data Bank of Japan (DDBJ) of the National Institute of Genetics (NIG) has initiated a cloud computing-based analytical pipeline, the DDBJ Read Annotation Pipeline (DDBJ Pipeline), for a high-throughput annotation of NGS reads. The DDBJ Pipeline offers a user-friendly graphical web interface and processes massive NGS datasets using decentralized processing by NIG supercomputers currently free of charge. The proposed pipeline consists of two analysis components: basic analysis for reference genome mapping and de novo assembly and subsequent high-level analysis of structural and functional annotations. Users may smoothly switch between the two components in the pipeline, facilitating web-based operations on a supercomputer for high-throughput data analysis. Moreover, public NGS reads of the DDBJ Sequence Read Archive located on the same supercomputer can be imported into the pipeline through the input of only an accession number. This proposed pipeline will facilitate research by utilizing unified analytical workflows applied to the NGS data. The DDBJ Pipeline is accessible at http://p.ddbj.nig.ac.jp/. PMID:23657089

Effects of Multimedia Annotations on Incidental Vocabulary Learning and Reading Comprehension of Advanced Learners of English as a Foreign Language

ERIC Educational Resources Information Center

Akbulut, Yavuz

2007-01-01

The study investigates immediate and delayed effects of different hypermedia glosses on incidental vocabulary learning and reading comprehension of advanced foreign language learners. Sixty-nine freshman TEFL students studying at a Turkish university were randomly assigned to three types of annotations: (a) definitions of words, (b) definitions…

Examining Students' Use of Online Annotation Tools in Support of Argumentative Reading

ERIC Educational Resources Information Center

Lu, Jingyan; Deng, Liping

2013-01-01

This study examined how students in a Hong Kong high school used Diigo, an online annotation tool, to support their argumentative reading activities. Two year 10 classes, a high-performance class (HPC) and an ordinary-performance class (OPC), highlighted passages of text and wrote and attached sticky notes to them to clarify argumentation…

An Annotated Bibliography of Education for Medical Librarianship, 1940-1968

PubMed Central

Shirley, Sherrilynne

1969-01-01

An attempt has been made in this bibliography to represent the various viewpoints concerning education for medical librarianship equally. The topics covered include: general background reading and readings for those interested in establishing courses in medical librarianship. The former includes annotations on the history and international aspects of the subject. The latter consists of annotations of articles on early courses and present courses in medical librarianship. A final area discussed is the Medical Library Association's Code for the Training and Certification of Medical Librarians. PMID:4898629

Curriculum Materials for "Distributive Education." Annotated Listing of Materials Available from Public Education Agencies.

ERIC Educational Resources Information Center

Bureau of Adult, Vocational, and Technical Education (DHEW/OE), Washington, DC.

This annotated listing of curriculum materials for Distributive Education provides planners, administrators, vocational educators, and others with information as to available curriculum materials developed by the various States. The materials are identified with the instructional titles and codes from the classification system of the Office of…

Curriculum Materials for "Trade and Industrial Occupations." Annotated Listing of Materials Available from Public Education Agencies.

ERIC Educational Resources Information Center

Bureau of Adult, Vocational, and Technical Education (DHEW/OE), Washington, DC.

This annotated listing of curriculum materials for Trade and Industrial Occupations provides planners, administrators, vocational educators, and others with information as to available curriculum materials developed by the various States. The materials are identified with the instructional titles and codes from the classification system of the…

Chinese-English and English-Chinese Dictionaries in the Library of Congress. An Annotated Bibliography.

ERIC Educational Resources Information Center

Dunn, Robert, Comp.

An annotated bibliography of the Library of Congress' Chinese-English holdings on all subjects, as well as certain polyglot and multilingual dictionaries with English and Chinese entries. Included are general, encyclopaedic and comprehensive dictionaries; vocabularies; word lists; syllabaries; lists of place names, personal names, nomenclature,…

Curriculum Materials for "Health Occupations Education." Annotated Listing of Materials Available from Public Education Agencies

ERIC Educational Resources Information Center

Bureau of Adult, Vocational, and Technical Education (DHEW/OE), Washington, DC.

This annotated listing of curriculum materials for Health Occupations Education provides planners, administrators, vocational educators, and others with information as to available curriculum materials developed by the various States. The materials are identified with the instructional titles and codes from the classification system of the Office…

Latin America: An Annotated List of Materials for Children.

ERIC Educational Resources Information Center

United Nations Children's Fund, New York, NY. United States Committee.

This annotated bibliography of materials on Latin America is intended for children to age 14. South and Central America, Mexico, and the French, English, and Spanish speaking areas of the Caribbean are covered. Listings are by country and include history books, geography books, fiction, nonfiction, poetry, and folklore books. Some works in Spanish…

Handbook of Reference Sources. Second Edition.

ERIC Educational Resources Information Center

Nichols, Margaret Irby

Designed to serve as a selection aid for small public libraries and to list important sources available through the major resource centers of the Texas Library System, this bibliography lists 804 annotated reference sources with 126 additional works named within the annotations. The books are grouped into 18 major areas, each of which is broken…

Maternal and Child Health Bureau Active Projects FY 1991: An Annotated Listing.

ERIC Educational Resources Information Center

National Center for Education in Maternal and Child Health, Washington, DC.

This annotated listing provides brief descriptions of the 591 projects funded during 1991 by federal set-aside funds of the Maternal and Child Health (MCH) Services Block Grant and identified as special projects of regional and national significance (SPRANS). Preliminary information includes an introduction, an organization chart of the Maternal…

Special Issue: Annotated Bibliography for Volumes XIX-XXXII.

ERIC Educational Resources Information Center

Pullin, Richard A.

1998-01-01

This annotated bibliography lists 310 articles from the "Journal of Cooperative Education" from Volumes XIX-XXXII, 1983-1997. Annotations are presented in the order they appear in the journal; author and subject indexes are provided. (JOW)

The Effect of Hypertext Annotation Presentation Formats on Perceived Cognitive Load and Learner Control

ERIC Educational Resources Information Center

Yao, Yuanming; Gill, Michele

2009-01-01

The impact of hypertext presentation formats on learner control and cognitive load was examined in this study using Campbell and Stanley's (1963) Posttest Only Control Group design. One hundred eighty-six undergraduate students were randomly assigned to read a web-based text with no annotations, online glossary annotations, embedded annotations,…

Pooled assembly of marine metagenomic datasets: enriching annotation through chimerism.

PubMed

Magasin, Jonathan D; Gerloff, Dietlind L

2015-02-01

Despite advances in high-throughput sequencing, marine metagenomic samples remain largely opaque. A typical sample contains billions of microbial organisms from thousands of genomes and quadrillions of DNA base pairs. Its derived metagenomic dataset underrepresents this complexity by orders of magnitude because of the sparseness and shortness of sequencing reads. Read shortness and sequencing errors pose a major challenge to accurate species and functional annotation. This includes distinguishing known from novel species. Often the majority of reads cannot be annotated and thus cannot help our interpretation of the sample. Here, we demonstrate quantitatively how careful assembly of marine metagenomic reads within, but also across, datasets can alleviate this problem. For 10 simulated datasets, each with species complexity modeled on a real counterpart, chimerism remained within the same species for most contigs (97%). For 42 real pyrosequencing ('454') datasets, assembly increased the proportion of annotated reads, and even more so when datasets were pooled, by on average 1.6% (max 6.6%) for species, 9.0% (max 28.7%) for Pfam protein domains and 9.4% (max 22.9%) for PANTHER gene families. Our results outline exciting prospects for data sharing in the metagenomics community. While chimeric sequences should be avoided in other areas of metagenomics (e.g. biodiversity analyses), conservative pooled assembly is advantageous for annotation specificity and sensitivity. Intriguingly, our experiment also found potential prospects for (low-cost) discovery of new species in 'old' data. dgerloff@ffame.org Supplementary data are available at Bioinformatics online. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Systems Theory and Communication. Annotated Bibliography.

ERIC Educational Resources Information Center

Covington, William G., Jr.

This annotated bibliography presents annotations of 31 books and journal articles dealing with systems theory and its relation to organizational communication, marketing, information theory, and cybernetics. Materials were published between 1963 and 1992 and are listed alphabetically by author. (RS)

Closely Reading Informational Texts in the Primary Grades

ERIC Educational Resources Information Center

Fisher, Douglas; Frey, Nancy

2014-01-01

In this article we discuss the differences between close reading in the primary grades and upper elementary grades. We focus on text selection, initial reading. repeated reading, annotation, text-based discussions, and responding to texts.

The Energy Education Bibliography. An Annotated Bibliography of Key Resources for Energy and Conservation Education.

ERIC Educational Resources Information Center

Scherner, Sharon; And Others

The annotated bibliography lists approximately 180 energy and conservation education resources. The bibliography is intended to aid K-12 classroom teachers and curriculum developers identify key resources as they develop and implement energy education programs. Sample topics in the works listed deal with the story of natural gas, living with…

Significant U.S. 20th Century Education Books: Biblio-Historical Essay.

ERIC Educational Resources Information Center

Parker, Franklin

Presented in historical context, the books listed in this annotated bibliography offer insights into professional education concerns and can help teachers know about the great ideas and themes of their field, and what the best and most provocative books are today. The bibliography begins with books that list and annotate topically selected best…

The Holocaust in Books and Films. A Selected, Annotated List.

ERIC Educational Resources Information Center

Muffs, Judith Herschlag, Ed.

This is an annotated list of over 400 resource books and films on Jewish history before the Holocaust, the history and development of Nazism, experiences during the Holocaust and its aftermath, and the phenomenon of prejudice and anti-Semitism. Designed primarily for teachers and librarians in secondary schools and to some extent in elementary…

Resources for Comprehensive Guidance & Counselling Programs. An Annotated List for Counsellors, Teachers, Administrators.

ERIC Educational Resources Information Center

Schlosser, Grace A.

With the growing popularity of comprehensive guidance and counseling programs in the schools, school personnel need model programs to guide them. An annotated list of suggested resources, designed to assist schools in the selection of materials to support comprehensive counseling and guidance programs, is provided here. All of the materials have…

Steps for Creating a Specialized Corpus and Developing an Annotated Frequency-Based Vocabulary List

ERIC Educational Resources Information Center

Toriida, Marie-Claude

2016-01-01

This article provides introductory, step-by-step explanations of how to make a specialized corpus and an annotated frequency-based vocabulary list. One of my objectives is to help teachers, instructors, program administrators, and graduate students with little experience in this field be able to do so using free resources. Instructions are first…

Office of Maternal and Child Health Active Projects FY 1989. An Annotated Listing.

ERIC Educational Resources Information Center

National Center for Education in Maternal and Child Health, Washington, DC.

An annotated listing is presented of projects offering maternal and child health care services. These projects, referred to as special projects of regional and national significance (SPRANS), are supported by the Office of Maternal and Child Health of the Department of Health and Human Services. The first section provides information on services…

Youth, AIDS, and HIV: Resources for Educators and Policymakers, 1995. Bulletin 95244. Revised.

ERIC Educational Resources Information Center

Wisconsin State Dept. of Public Instruction, Madison.

This directory lists selected national, state, and local resources, and provides an annotated listing of various materials for AIDS education and HIV prevention. Telephone numbers and hours of operation are provided for national, state, and local resources--a brief statement of each agency's purview is also given. Annotated resources are divided…

Annotated Bibliography of Research in the Teaching of English

ERIC Educational Resources Information Center

Beach, Richard; Bigelow, Martha; Dillon, Deborah; Dockter, Jessie; Galda, Lee; Helman, Lori; Kalnin, Julie; Ngo, Bic; O'Brien, David; Sato, Mistilina; Scharber, Cassandra; Jorgensen, Karen; Liang, Lauren; Braaksma, Martine; Janssen, Tanja

2008-01-01

This article presents an annotated bibliography of research in the teaching of English. This annotated bibliography addresses the following topics: (1) discourse/cultural analysis; (2) literacy; (3) literary response/literature/narrative; (4) professional development/teacher education; (5) reading; (6) second language literacy; (7)…

Annotated Bibliography of Textbooks and Reference Materials in Marine Sciences. Provisional Edition. Intergovernmental Oceanographic Commission, Technical Series.

ERIC Educational Resources Information Center

United Nations Educational, Scientific, and Cultural Organization, Paris (France). Intergovernmental Oceanographic Commission.

Presented is an annotated bibliography based on selected materials from a preliminary survey of existing bibliographies, publishers' listings, and other sources. It is intended to serve educators and researchers, especially those in countries where marine sciences are just developing. One hundred annotated and 450 non-annotated entries are…

Green Zines: A List of Alternative Environmental Periodicals.

ERIC Educational Resources Information Center

Dodge, Christopher

1992-01-01

Presents an annotated list of 200 alternative environmental periodicals. The list's scope includes animal welfare, vegetarianism, sustainable agriculture, conservation, renewable energy, and antinuclear activism. (MDH)

An Annotated Bibliography of Spanish Readers for Levels I-IV.

ERIC Educational Resources Information Center

Morrow, Judith C.

Introductory remarks and suggestions for the possible use of reading materials included in this annotated bibliography precede the 38 entries classified according to grade level. The informational data includes: author, title, source, and availability. Annotations refer to format, level indicated, grammar, theme or plot, projected teaching use,…

Online Metacognitive Strategies, Hypermedia Annotations, and Motivation on Hypertext Comprehension

ERIC Educational Resources Information Center

Shang, Hui-Fang

2016-01-01

This study examined the effect of online metacognitive strategies, hypermedia annotations, and motivation on reading comprehension in a Taiwanese hypertext environment. A path analysis model was proposed based on the assumption that if English as a foreign language learners frequently use online metacognitive strategies and hypermedia annotations,…

Promoting Different Reading Comprehension Levels through Online Annotations

ERIC Educational Resources Information Center

Tseng, Sheng-Shiang; Yeh, Hui-Chin; Yang, Shih-hsien

2015-01-01

Previous studies have evaluated reading comprehension as the general understanding of reading texts. However, this broad and generic assessment of reading comprehension overlooks the specific aspects and processes that students need to develop. This study adopted Kintsch's Construction-Integration model to tap into reading comprehension at…

Defense Intelligence Agency

Science.gov Websites

Military Power Publications Photo Gallery Speeches and Testimonies DIA Director's 2018 Reading List No FEAR Home DIA Director's 2018 Reading List DIA Director's 2018 Reading List Just released! DIA Director Army Lt. Gen. Robert Ashley's 2018 Professional Reading List Read More DIA Director gives Worldwide Threat

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

PubMed Central

Lukjancenko, Oksana; Thomsen, Martin Christen Frølund; Maddalena Sperotto, Maria; Lund, Ole; Møller Aarestrup, Frank; Sicheritz-Pontén, Thomas

2017-01-01

An increasing amount of species and gene identification studies rely on the use of next generation sequence analysis of either single isolate or metagenomics samples. Several methods are available to perform taxonomic annotations and a previous metagenomics benchmark study has shown that a vast number of false positive species annotations are a problem unless thresholds or post-processing are applied to differentiate between correct and false annotations. MGmapper is a package to process raw next generation sequence data and perform reference based sequence assignment, followed by a post-processing analysis to produce reliable taxonomy annotation at species and strain level resolution. An in-vitro bacterial mock community sample comprised of 8 genuses, 11 species and 12 strains was previously used to benchmark metagenomics classification methods. After applying a post-processing filter, we obtained 100% correct taxonomy assignments at species and genus level. A sensitivity and precision at 75% was obtained for strain level annotations. A comparison between MGmapper and Kraken at species level, shows MGmapper assigns taxonomy at species level using 84.8% of the sequence reads, compared to 70.5% for Kraken and both methods identified all species with no false positives. Extensive read count statistics are provided in plain text and excel sheets for both rejected and accepted taxonomy annotations. The use of custom databases is possible for the command-line version of MGmapper, and the complete pipeline is freely available as a bitbucked package (https://bitbucket.org/genomicepidemiology/mgmapper). A web-version (https://cge.cbs.dtu.dk/services/MGmapper) provides the basic functionality for analysis of small fastq datasets. PMID:28467460

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.

PubMed

Petersen, Thomas Nordahl; Lukjancenko, Oksana; Thomsen, Martin Christen Frølund; Maddalena Sperotto, Maria; Lund, Ole; Møller Aarestrup, Frank; Sicheritz-Pontén, Thomas

2017-01-01

An increasing amount of species and gene identification studies rely on the use of next generation sequence analysis of either single isolate or metagenomics samples. Several methods are available to perform taxonomic annotations and a previous metagenomics benchmark study has shown that a vast number of false positive species annotations are a problem unless thresholds or post-processing are applied to differentiate between correct and false annotations. MGmapper is a package to process raw next generation sequence data and perform reference based sequence assignment, followed by a post-processing analysis to produce reliable taxonomy annotation at species and strain level resolution. An in-vitro bacterial mock community sample comprised of 8 genuses, 11 species and 12 strains was previously used to benchmark metagenomics classification methods. After applying a post-processing filter, we obtained 100% correct taxonomy assignments at species and genus level. A sensitivity and precision at 75% was obtained for strain level annotations. A comparison between MGmapper and Kraken at species level, shows MGmapper assigns taxonomy at species level using 84.8% of the sequence reads, compared to 70.5% for Kraken and both methods identified all species with no false positives. Extensive read count statistics are provided in plain text and excel sheets for both rejected and accepted taxonomy annotations. The use of custom databases is possible for the command-line version of MGmapper, and the complete pipeline is freely available as a bitbucked package (https://bitbucket.org/genomicepidemiology/mgmapper). A web-version (https://cge.cbs.dtu.dk/services/MGmapper) provides the basic functionality for analysis of small fastq datasets.

Socioeconomic resources in medicine: review of the literature.

PubMed Central

Austin, T

1984-01-01

In this era of intense competition in medicine, it is essential for health sciences librarians to keep abreast of the new and varied socioeconomic influences in the medical environment. A list of socioeconomic resources is provided to help meet this objective. A citation analysis of the Socioeconomic Bibliographic Information (SIB) database was used as a selection criterion. An annotated list of ninety journals, newspapers, and newsletters is included, which provides title of publication, publisher, cost, index information, and special characteristics. In addition, publishers and associations that provide socioeconomic information are listed, and an annotated list of standard statistical resource books is given. PMID:6378285

MEETING: Chlamydomonas Annotation Jamboree - October 2003

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grossman, Arthur R

2007-04-13

Shotgun sequencing of the nuclear genome of Chlamydomonas reinhardtii (Chlamydomonas throughout) was performed at an approximate 10X coverage by JGI. Roughly half of the genome is now contained on 26 scaffolds, all of which are at least 1.6 Mb, and the coverage of the genome is ~95%. There are now over 200,000 cDNA sequence reads that we have generated as part of the Chlamydomonas genome project (Grossman, 2003; Shrager et al., 2003; Grossman et al. 2007; Merchant et al., 2007); other sequences have also been generated by the Kasuza sequence group (Asamizu et al., 1999; Asamizu et al., 2000) ormore » individual laboratories that have focused on specific genes. Shrager et al. (2003) placed the reads into distinct contigs (an assemblage of reads with overlapping nucleotide sequences), and contigs that group together as part of the same genes have been designated ACEs (assembly of contigs generated from EST information). All of the reads have also been mapped to the Chlamydomonas nuclear genome and the cDNAs and their corresponding genomic sequences have been reassembled, and the resulting assemblage is called an ACEG (an Assembly of contiguous EST sequences supported by genomic sequence) (Jain et al., 2007). Most of the unique genes or ACEGs are also represented by gene models that have been generated by the Joint Genome Institute (JGI, Walnut Creek, CA). These gene models have been placed onto the DNA scaffolds and are presented as a track on the Chlamydomonas genome browser associated with the genome portal (http://genome.jgi-psf.org/Chlre3/Chlre3.home.html). Ultimately, the meeting grant awarded by DOE has helped enormously in the development of an annotation pipeline (a set of guidelines used in the annotation of genes) and resulted in high quality annotation of over 4,000 genes; the annotators were from both Europe and the USA. Some of the people who led the annotation initiative were Arthur Grossman, Olivier Vallon, and Sabeeha Merchant (with many individual annotators from Europe and the USA). Olivier Vallon has been most active in continued input of annotation information.« less

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.

PubMed

Carver, Tim; Berriman, Matthew; Tivey, Adrian; Patel, Chinmay; Böhme, Ulrike; Barrell, Barclay G; Parkhill, Julian; Rajandream, Marie-Adèle

2008-12-01

Artemis and Artemis Comparison Tool (ACT) have become mainstream tools for viewing and annotating sequence data, particularly for microbial genomes. Since its first release, Artemis has been continuously developed and supported with additional functionality for editing and analysing sequences based on feedback from an active user community of laboratory biologists and professional annotators. Nevertheless, its utility has been somewhat restricted by its limitation to reading and writing from flat files. Therefore, a new version of Artemis has been developed, which reads from and writes to a relational database schema, and allows users to annotate more complex, often large and fragmented, genome sequences. Artemis and ACT have now been extended to read and write directly to the Generic Model Organism Database (GMOD, http://www.gmod.org) Chado relational database schema. In addition, a Gene Builder tool has been developed to provide structured forms and tables to edit coordinates of gene models and edit functional annotation, based on standard ontologies, controlled vocabularies and free text. Artemis and ACT are freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/ http://www.sanger.ac.uk/Software/ACT/

1974-75 NCTE Guide to Teaching Materials for English, Grades 7-12: An Annotated Listing of Textbooks and Related Materials for Secondary Schools Prepared by the NCTE Staff.

ERIC Educational Resources Information Center

National Council of Teachers of English, Urbana, IL.

This guide contains 550 annotations for English anthologies, textbooks, workbooks, multimedia packages, and other materials for grades 7-12. Works of literature, audiovisual materials, and professional publications are included only when integrally related to specific, listed instructional materials. Entries are grouped into the following subject…

An Annotated List of Historically and Scientifically Important Works Published Before 1900 in the Library of The National Bureau of Standards.

ERIC Educational Resources Information Center

Terner, Janet

The purpose of this project was to specifically identify important works within the National Bureau of Standards library collection of approximately 125,000 items that are generally acknowledged to be pertinent to the development of modern science and technology. Presented is an annotated list including 197 items selected from the pre-1900…

Hearing Loss and Deafness. An Annotated Bibliography of Children's Books about Hearing Loss, Deafness, and Hearing Impaired People. Have You Ever Wondered About...?

ERIC Educational Resources Information Center

Oldman-Brown, Deborah

The annotated bibliography lists children's books about hearing loss, deafness, and hearing-impaired persons. The first section lists books about Helen Keller and Anne Sullivan, Keller's teacher. In section 2, each of the fiction entries features at least one major character with hearing impairment. Section 3 contains non-fiction books about…

Interaction of a Vocabulary Quiz with Cognitive Instructional Strategies in First Language Learning among Japanese Undergraduates

ERIC Educational Resources Information Center

Tomita, Kei

2016-01-01

In response to concerns regarding effects of hyperlinked annotation on reading comprehension, this study was undertaken to compare hyperlinked annotation with student highlighting of unknown/difficult words. An online highlighting tool was used to help students reflect their prior vocabulary in a hyperlink-based annotated passage. Highlighting…

The Effects of Multimedia Annotation and Summary Writing on Taiwanese EFL Students' Reading Comprehension

ERIC Educational Resources Information Center

Huang, Wen-Chi

2014-01-01

The present study investigates the effects of multimedia annotation through the discourse scheme and summary writing through the grounding theory (Chang, 1997) on text comprehension. Specifically, the study focuses on examining the influences of multimedia annotation from a special perspective, namely, the use of modified discourse scheme to…

Student and Teacher Perspectives on a Close Reading Protocol

ERIC Educational Resources Information Center

Fisher, Douglas; Frey, Nancy

2014-01-01

Close reading is an instructional practice that has gained attention of late. It involves reading a complex text, annotation, and repeatedly reading to answer text-dependent questions. Although there are a number of recommendations for the use of close reading, there has not been a systematic analysis of student or teacher perceptions of this…

What's New in Children's Literature for the Children of Louisiana? A Selected Annotated Bibliography with Readability Levels (Selected) and Associated Louisiana Content Standards

ERIC Educational Resources Information Center

Webre, Elizabeth C.

2011-01-01

An annotated list of children's books published within the last 15 years and related to Louisiana culture, environment, and economics are linked to the Louisiana Content Standards. Readability levels of selected books are included, providing guidance as to whether a book is appropriate for independent student use. The thirty-three books listed are…

Novedades Bibliograficas No. 4 (Bibliographical News No. 4).

ERIC Educational Resources Information Center

Boletin del Centro Nacional de Documentacion e Informacion Educativa, 1971

1971-01-01

The first section of this document lists and annotates three conference reports from international meetings. A chapter-by-chapter annotation on a report from the 1971 Conference of European Ministers of Education on Post-Secondary Education is provided along with annotations on two Colombian seminars: one on literacy education and the other on…

Annotated Bibliography on Apartheid.

ERIC Educational Resources Information Center

Totten, Sam, ed.

1985-01-01

This annotated listing on apartheid in South Africa cites general resources, classroom materials, fiction, poetry, audio visuals, and organizations and associations. Also included are a glossary and a brief chronology of South Africa's apartheid system. (RM)

Aviation medicine translations : annotated bibliography of recently translated material, III.

DOT National Transportation Integrated Search

1965-04-01

An annotated bibliography of translations of foreignlanguage research articles is presented. The 26 listed entries are concerned with studies of aviation medicine, periodicity, optokinetic nystagmus, vision, vestibular function, and physical science....

Effects of dehydration on performance in man: Annotated bibliography

NASA Technical Reports Server (NTRS)

Greenleaf, J. E.

1973-01-01

A compilation of studies on the effect of dehydration on human performance and related physiological mechanisms. The annotations are listed in alphabetical order by first author and cover material through June 1973.

Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts

PubMed Central

Cheng, Bing; Furtado, Agnelo

2017-01-01

Abstract Polyploidization contributes to the complexity of gene expression, resulting in numerous related but different transcripts. This study explored the transcriptome diversity and complexity of the tetraploid Arabica coffee (Coffea arabica) bean. Long-read sequencing (LRS) by Pacbio Isoform sequencing (Iso-seq) was used to obtain full-length transcripts without the difficulty and uncertainty of assembly required for reads from short-read technologies. The tetraploid transcriptome was annotated and compared with data from the sub-genome progenitors. Caffeine and sucrose genes were targeted for case analysis. An isoform-level tetraploid coffee bean reference transcriptome with 95 995 distinct transcripts (average 3236 bp) was obtained. A total of 88 715 sequences (92.42%) were annotated with BLASTx against NCBI non-redundant plant proteins, including 34 719 high-quality annotations. Further BLASTn analysis against NCBI non-redundant nucleotide sequences, Coffea canephora coding sequences with UTR, C. arabica ESTs, and Rfam resulted in 1213 sequences without hits, were potential novel genes in coffee. Longer UTRs were captured, especially in the 5΄UTRs, facilitating the identification of upstream open reading frames. The LRS also revealed more and longer transcript variants in key caffeine and sucrose metabolism genes from this polyploid genome. Long sequences (>10 kilo base) were poorly annotated. LRS technology shows the limitation of previous studies. It provides an important tool to produce a reference transcriptome including more of the diversity of full-length transcripts to help understand the biology and support the genetic improvement of polyploid species such as coffee. PMID:29048540

Using hidden Markov models and observed evolution to annotate viral genomes.

PubMed

McCauley, Stephen; Hein, Jotun

2006-06-01

ssRNA (single stranded) viral genomes are generally constrained in length and utilize overlapping reading frames to maximally exploit the coding potential within the genome length restrictions. This overlapping coding phenomenon leads to complex evolutionary constraints operating on the genome. In regions which code for more than one protein, silent mutations in one reading frame generally have a protein coding effect in another. To maximize coding flexibility in all reading frames, overlapping regions are often compositionally biased towards amino acids which are 6-fold degenerate with respect to the 64 codon alphabet. Previous methodologies have used this fact in an ad hoc manner to look for overlapping genes by motif matching. In this paper differentiated nucleotide compositional patterns in overlapping regions are incorporated into a probabilistic hidden Markov model (HMM) framework which is used to annotate ssRNA viral genomes. This work focuses on single sequence annotation and applies an HMM framework to ssRNA viral annotation. A description of how the HMM is parameterized, whilst annotating within a missing data framework is given. A Phylogenetic HMM (Phylo-HMM) extension, as applied to 14 aligned HIV2 sequences is also presented. This evolutionary extension serves as an illustration of the potential of the Phylo-HMM framework for ssRNA viral genomic annotation. The single sequence annotation procedure (SSA) is applied to 14 different strains of the HIV2 virus. Further results on alternative ssRNA viral genomes are presented to illustrate more generally the performance of the method. The results of the SSA method are encouraging however there is still room for improvement, and since there is overwhelming evidence to indicate that comparative methods can improve coding sequence (CDS) annotation, the SSA method is extended to a Phylo-HMM to incorporate evolutionary information. The Phylo-HMM extension is applied to the same set of 14 HIV2 sequences which are pre-aligned. The performance improvement that results from including the evolutionary information in the analysis is illustrated.

Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.

PubMed

Sakai, Hiroaki; Lee, Sung Shin; Tanaka, Tsuyoshi; Numa, Hisataka; Kim, Jungsok; Kawahara, Yoshihiro; Wakimoto, Hironobu; Yang, Ching-chia; Iwamoto, Masao; Abe, Takashi; Yamada, Yuko; Muto, Akira; Inokuchi, Hachiro; Ikemura, Toshimichi; Matsumoto, Takashi; Sasaki, Takuji; Itoh, Takeshi

2013-02-01

The Rice Annotation Project Database (RAP-DB, http://rapdb.dna.affrc.go.jp/) has been providing a comprehensive set of gene annotations for the genome sequence of rice, Oryza sativa (japonica group) cv. Nipponbare. Since the first release in 2005, RAP-DB has been updated several times along with the genome assembly updates. Here, we present our newest RAP-DB based on the latest genome assembly, Os-Nipponbare-Reference-IRGSP-1.0 (IRGSP-1.0), which was released in 2011. We detected 37,869 loci by mapping transcript and protein sequences of 150 monocot species. To provide plant researchers with highly reliable and up to date rice gene annotations, we have been incorporating literature-based manually curated data, and 1,626 loci currently incorporate literature-based annotation data, including commonly used gene names or gene symbols. Transcriptional activities are shown at the nucleotide level by mapping RNA-Seq reads derived from 27 samples. We also mapped the Illumina reads of a Japanese leading japonica cultivar, Koshihikari, and a Chinese indica cultivar, Guangluai-4, to the genome and show alignments together with the single nucleotide polymorphisms (SNPs) and gene functional annotations through a newly developed browser, Short-Read Assembly Browser (S-RAB). We have developed two satellite databases, Plant Gene Family Database (PGFD) and Integrative Database of Cereal Gene Phylogeny (IDCGP), which display gene family and homologous gene relationships among diverse plant species. RAP-DB and the satellite databases offer simple and user-friendly web interfaces, enabling plant and genome researchers to access the data easily and facilitating a broad range of plant research topics.

Math for Learning, Math for Life: An Annotated Bibliography.

ERIC Educational Resources Information Center

Elliott, Claire

This document presents a total of 109 references and annotations of works that are in some way related to the topic of math for learning and life. Section 1 presents 68 annotated references with keywords drawn from the Canadian Literacy Thesaurus. Selected topics covered in the listed publications are as follows: numeracy as social practice; the…

Eastern gas shales bibliography selected annotations: gas, oil, uranium, etc. Citations in bituminous shales worldwide

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hall, V.S.

1980-06-01

This bibliography contains 2702 citations, most of which are annotated. They are arranged by author in numerical order with a geographical index following the listing. The work is international in scope and covers the early geological literature, continuing through 1979 with a few 1980 citations in Addendum II. Addendum I contains a listing of the reports, well logs and symposiums of the Unconventional Gas Recovery Program (UGR) through August 1979. There is an author-subject index for these publications following the listing. The second part of Addendum I is a listing of the UGR maps which also has a subject-author indexmore » following the map listing. Addendum II includes several important new titles on the Devonian shale as well as a few older citations which were not found until after the bibliography had been numbered and essentially completed. A geographic index for these citations follows this listing.« less

Functional sequencing read annotation for high precision microbiome analysis

PubMed Central

Zhu, Chengsheng; Miller, Maximilian; Marpaka, Srinayani; Vaysberg, Pavel; Rühlemann, Malte C; Wu, Guojun; Heinsen, Femke-Anouska; Tempel, Marie; Zhao, Liping; Lieb, Wolfgang; Franke, Andre; Bromberg, Yana

2018-01-01

Abstract The vast majority of microorganisms on Earth reside in often-inseparable environment-specific communities—microbiomes. Meta-genomic/-transcriptomic sequencing could reveal the otherwise inaccessible functionality of microbiomes. However, existing analytical approaches focus on attributing sequencing reads to known genes/genomes, often failing to make maximal use of available data. We created faser (functional annotation of sequencing reads), an algorithm that is optimized to map reads to molecular functions encoded by the read-correspondent genes. The mi-faser microbiome analysis pipeline, combining faser with our manually curated reference database of protein functions, accurately annotates microbiome molecular functionality. mi-faser’s minutes-per-microbiome processing speed is significantly faster than that of other methods, allowing for large scale comparisons. Microbiome function vectors can be compared between different conditions to highlight environment-specific and/or time-dependent changes in functionality. Here, we identified previously unseen oil degradation-specific functions in BP oil-spill data, as well as functional signatures of individual-specific gut microbiome responses to a dietary intervention in children with Prader–Willi syndrome. Our method also revealed variability in Crohn's Disease patient microbiomes and clearly distinguished them from those of related healthy individuals. Our analysis highlighted the microbiome role in CD pathogenicity, demonstrating enrichment of patient microbiomes in functions that promote inflammation and that help bacteria survive it. PMID:29194524

An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq.

PubMed

Azofeifa, Joseph G; Allen, Mary A; Lladser, Manuel E; Dowell, Robin D

2017-01-01

We present a fast and simple algorithm to detect nascent RNA transcription in global nuclear run-on sequencing (GRO-seq). GRO-seq is a relatively new protocol that captures nascent transcripts from actively engaged polymerase, providing a direct read-out on bona fide transcription. Most traditional assays, such as RNA-seq, measure steady state RNA levels which are affected by transcription, post-transcriptional processing, and RNA stability. GRO-seq data, however, presents unique analysis challenges that are only beginning to be addressed. Here, we describe a new algorithm, Fast Read Stitcher (FStitch), that takes advantage of two popular machine-learning techniques, hidden Markov models and logistic regression, to classify which regions of the genome are transcribed. Given a small user-defined training set, our algorithm is accurate, robust to varying read depth, annotation agnostic, and fast. Analysis of GRO-seq data without a priori need for annotation uncovers surprising new insights into several aspects of the transcription process.

Aviation medicine translations : annotated bibliography of recently translated material, IV.

DOT National Transportation Integrated Search

1966-01-01

An annotated bibliography of translations of foreign-language articles is presented. The 25 listed entries are concerned with studies in aviation medicine, vertigo and nystagmus, physical science, hypoxia, vision, altitude, drugs, binaural hearing, t...

Aviation medicine translations : annotated bibliography of recently translated material, VII.

DOT National Transportation Integrated Search

1972-05-01

An annotated bibliography of translations of foreign-language articles is presented. The 25 listed entries are concerned with studies in aviation medicine, vertigo and nystagmus, physical science, hypoxia, vision, altitude, drugs, binaural hearing, t...

50 CFR 23.90 - What are the criteria for listing species in Appendix III?

Code of Federal Regulations, 2014 CFR

2014-10-01

... ENDANGERED SPECIES OF WILD FAUNA AND FLORA (CITES) Lists of Species § 23.90 What are the criteria for listing... Secretariat notifies the Parties of the request. (c) Criteria for listing. For a Party to list a species in... the annotation. (e) U.S. procedure. The procedure to list a species native to the United States in...

SETI science working group report

NASA Technical Reports Server (NTRS)

Drake, F.; Wolfe, J. H.; Seeger, C. L.

1984-01-01

This report covers the initial activities and deliberations of a continuing working group asked to assist the SETI Program Office at NASA. Seven chapters present the group's consensus on objectives, strategies, and plans for instrumental R&D and for a microwave search for extraterrestrial in intelligence (SETI) projected for the end of this decade. Thirteen appendixes reflect the views of their individual authors. Included are discussions of the 8-million-channel spectrum analyzer architecture and the proof-of-concept device under development; signal detection, recognition, and identification on-line in the presence of noise and radio interference; the 1-10 GHz sky survey and the 1-3 GHz targeted search envisaged; and the mutual interests of SETI and radio astronomy. The report ends with a selective, annotated SETI reading list of pro and contra SETI publications.

Articles Pertinent to the Campus Press: A Selected Annotated Bibliography

ERIC Educational Resources Information Center

Ardoin, Birthney; And Others

1977-01-01

Lists and annotates articles dealing with such topics as advertising, audience analysis, broadcasting, broadcast law, criticism and defense of media, editorial policy and methods, media policy and methods, journalism education, press law, and school publications. (GW)

Aviation medicine translations : annotated bibliography of recently translated material, IX.

DOT National Transportation Integrated Search

1976-04-01

An annotated bibliography of translations of foreign-language articles is presented. The 20 listed entries are concerned with studies of cardiology; aviation vestibular testing and vestibular factors in accidents; use of bones of identification of re...

Aviation medicine translations : annotated bibliography of recently translated material, VIII.

DOT National Transportation Integrated Search

1973-12-01

An annotated bibliography of translations of foreign-language articles is presented. The 20 listed entries are concerned with studies of cardiology; aviation vestibular testing and vestibular factors in accidents; use of bones of identification of re...

A selected, annotated list of materials that support the development of policies designed to reduce racial and ethnic health disparities

PubMed Central

Donatiello, Joann E.; Droese, Peter W.; Kim, Soo H.

2004-01-01

Research documents the existence of racial and ethnic health disparities. As a result, policy makers are seeking to address these disparities. This list is a starting point for building or updating a collection that supports this policy development process. It is written for health policy librarians and researchers and includes annotated recommendations for books, periodicals, government publications, and Websites. Entries for print publications are primarily from 1998 to 2003. PMID:15098056

A selected, annotated list of materials that support the development of policies designed to reduce racial and ethnic health disparities.

PubMed

Donatiello, Joann E; Droese, Peter W; Kim, Soo H

2004-04-01

Research documents the existence of racial and ethnic health disparities. As a result, policy makers are seeking to address these disparities. This list is a starting point for building or updating a collection that supports this policy development process. It is written for health policy librarians and researchers and includes annotated recommendations for books, periodicals, government publications, and Websites. Entries for print publications are primarily from 1998 to 2003.

Online Reading Informs Classroom Instruction and Promotes Collaborative Learning

ERIC Educational Resources Information Center

Wright, L. Kate; Zyto, Sacha; Karger, David R.; Newman, Dina L.

2013-01-01

Web-based collaborative annotation tools can facilitate communication among students and their instructors through online reading and communication. Collaborative reading fosters peer interaction and is an innovative way to facilitate discussion and participation in larger enrollment courses. It can be especially powerful as it creates an…

Volcanology and volcanic activity with a primary focus on potential hazard impacts for the Hawaii geothermal project

NASA Astrophysics Data System (ADS)

Moore, R. B.; Delaney, P. T.; Kauahikaua, J. P.

This annotated bibliography reviews published references about potential volcanic hazards on the Island of Hawaii that are pertinent to drilling and operating geothermal wells. The first two sections of this annotated bibliography list the most important publications that describe eruptions of Kilauea volcano, with special emphasis on activity in and near the designated geothermal subzones. References about historic eruptions from Mauna Loa's northeast rift zone, as well as the most recent activity on the southern flank of dormant Mauna Kea, adjacent to the Humu'ula Saddle are described. The last section of this annotated bibliography lists the most important publications that describe and analyze deformations of the surface of Kilauea and Mauna Loa volcanoes.

Summertime Favorites.

ERIC Educational Resources Information Center

National Endowment for the Humanities (NFAH), Washington, DC.

Compiled from the reading lists of 60 exemplary schools, this "summertime" reading list provides titles of tried-and-true works published in or before 1960 which appeared on at least five of the school reading lists. Selections are divided according to grade level. The list offers over 100 book or series of titles recommended for…

Annotated Bibliography for Adult Educators in Institutional Settings.

ERIC Educational Resources Information Center

Elwyn Inst., PA.

This annotated bibliography of instructional materials for adult educators in institutional settings lists materials available in fourteen areas: basic skills, citizenship education, community services, consumer education, health and safety, mathematics, meal planning, money management, personal information/general life skills, pre-employment…

Teaching Revising and Editing: An Annotated Bibliography. Bibliographies and Indexes in Mass Media and Communications.

ERIC Educational Resources Information Center

Speck, Bruce W.; Hinnen, Dean A.; Hinnen, Kathleen

This book is devoted to the many facets of the writing, revising, and publication process. The book provides a comprehensive overview of the literature over the past 25 years and applies to writing activities in K-12, undergraduate and graduate classrooms, as well as the workplace. Each listing is annotated. Over 800 annotated entries for books,…

Computer Applications in Reading. Third Edition.

ERIC Educational Resources Information Center

Blanchard, Jay S.; And Others

Intended as a reference for researchers, teachers, and administrators, this book chronicles research, programs, and uses of computers in reading. Chapter 1 provides a broad view of computer applications in education, while Chapter 2 provides annotated references for computer based reading and language arts programs for children and adults in…

A Transcriptome Map of Actinobacillus pleuropneumoniae at Single-Nucleotide Resolution Using Deep RNA-Seq

PubMed Central

Su, Zhipeng; Zhu, Jiawen; Xu, Zhuofei; Xiao, Ran; Zhou, Rui; Li, Lu; Chen, Huanchun

2016-01-01

Actinobacillus pleuropneumoniae is the pathogen of porcine contagious pleuropneumoniae, a highly contagious respiratory disease of swine. Although the genome of A. pleuropneumoniae was sequenced several years ago, limited information is available on the genome-wide transcriptional analysis to accurately annotate the gene structures and regulatory elements. High-throughput RNA sequencing (RNA-seq) has been applied to study the transcriptional landscape of bacteria, which can efficiently and accurately identify gene expression regions and unknown transcriptional units, especially small non-coding RNAs (sRNAs), UTRs and regulatory regions. The aim of this study is to comprehensively analyze the transcriptome of A. pleuropneumoniae by RNA-seq in order to improve the existing genome annotation and promote our understanding of A. pleuropneumoniae gene structures and RNA-based regulation. In this study, we utilized RNA-seq to construct a single nucleotide resolution transcriptome map of A. pleuropneumoniae. More than 3.8 million high-quality reads (average length ~90 bp) from a cDNA library were generated and aligned to the reference genome. We identified 32 open reading frames encoding novel proteins that were mis-annotated in the previous genome annotations. The start sites for 35 genes based on the current genome annotation were corrected. Furthermore, 51 sRNAs in the A. pleuropneumoniae genome were discovered, of which 40 sRNAs were never reported in previous studies. The transcriptome map also enabled visualization of 5'- and 3'-UTR regions, in which contained 11 sRNAs. In addition, 351 operons covering 1230 genes throughout the whole genome were identified. The RNA-Seq based transcriptome map validated annotated genes and corrected annotations of open reading frames in the genome, and led to the identification of many functional elements (e.g. regions encoding novel proteins, non-coding sRNAs and operon structures). The transcriptional units described in this study provide a foundation for future studies concerning the gene functions and the transcriptional regulatory architectures of this pathogen. PMID:27018591

TEcandidates: Prediction of genomic origin of expressed Transposable Elements using RNA-seq data.

PubMed

Valdebenito-Maturana, Braulio; Riadi, Gonzalo

2018-06-01

In recent years, Transposable Elements (TEs) have been related to gene regulation. However, estimating the origin of expression of TEs through RNA-seq is complicated by multimapping reads coming from their repetitive sequences. Current approaches that address multimapping reads are focused in expression quantification and not in finding the origin of expression. Addressing the genomic origin of expressed TEs could further aid in understanding the role that TEs might have in the cell. We have developed a new pipeline called TEcandidates, based on de novo transcriptome assembly to assess the instances of TEs being expressed, along with their location, to include in downstream DE analysis. TEcandidates takes as input the RNA-seq data, the genome sequence and the TE annotation file, and returns a list of coordinates of candidate TEs being expressed, the TEs that have been removed, and the genome sequence with removed TEs as masked. This masked genome is suited to include TEs in downstream expression analysis, as the ambiguity of reads coming from TEs is significantly reduced in the mapping step of the analysis. The script which runs the pipeline can be downloaded at http://www.mobilomics.org/tecandidates/downloads or http://github.com/TEcandidates/TEcandidates. griadi@utalca.cl. Supplementary data are available at Bioinformatics online.

Against Reading Lists

ERIC Educational Resources Information Center

Davis, Lennard J.

2012-01-01

A course's reading list is the skeleton of a semester's body of thought, the inventory that a professor writes up for the departmental Web site and the schedule of courses that lists the goods. Despite the obvious utility of fixed reading lists, one should jettison them when possible. The author has been conducting an informal experiment using a…

Aviation medicine translations : annotated bibliography of recently translated material, X.

DOT National Transportation Integrated Search

1981-01-01

An annotated bibliography of translations of foreign-language articles is presented. Of the 86 listed entries, 53 are concerned with studies of shift work, and 10 are concerned with studies of alcohol. : The remaining entries can be subsumed under th...

Organizational Communication in Health Care Settings: A Selected Annotated Bibliography.

ERIC Educational Resources Information Center

Taylor, James A.; And Others

This annotated bibliography on health related subjects lists more than 300 items emphasizing the relationships between communication, occupational role, technology, organizational design, and institutional policy. Items are classified (and cross-indexed) according to the following variables: organizational design, policy, communication,…

Studies of Scientific Disciplines. An Annotated Bibliography.

ERIC Educational Resources Information Center

Weisz, Diane; Kruytbosch, Carlos

Provided in this bibliography are annotated lists of social studies of science literature, arranged alphabetically by author in 13 disciplinary areas. These areas include astronomy; general biology; biochemistry and molecular biology; biomedicine; chemistry; earth and space sciences; economics; engineering; mathematics; physics; political science;…

Suggested Books for Children: An Annotated Bibliography

ERIC Educational Resources Information Center

NHSA Dialog, 2008

2008-01-01

This article provides an annotated bibliography of various children's books. It includes listings of books that illustrate the dynamic relationships within the natural environment, economic context, racial and cultural identities, cross-group similarities and differences, gender, different abilities and stories of injustice and resistance.

An Annotated Bibliography on the Severely and Profoundly Mentally Retarded.

ERIC Educational Resources Information Center

Cass, Michael, Comp.; Schilit, Jeffrey, Comp.

Presented is an annotated bibliography with approximately 250 entries relating to the severely and profoundly retarded. Citations are listed alphabetically by author under the following categories: assessments, measurements, evaluations; associations; attending behavior; behavior modification; books; classical conditioning; cognitive development;…

Articles on Mass Communication in U.S. and Foreign Journals: A Selected Annotated Bibliography--October, November, December 1978.

ERIC Educational Resources Information Center

McKerns, Joseph P.; Delahaye, Alfred N.

1979-01-01

Lists and annotates more than 200 articles on mass communication, grouped according to topic. Topics include advertising, broadcasting, courts and law, education for journalism, international, management, public relations, and visual communications. (GT)

Academic Primer Series: Eight Key Papers about Education Theory.

PubMed

Gottlieb, Michael; Boysen-Osborn, Megan; Chan, Teresa M; Krzyzaniak, Sara M; Pineda, Nicolas; Spector, Jordan; Sherbino, Jonathan

2017-02-01

Many teachers adopt instructional methods based on assumptions of best practices without attention to or knowledge of supporting education theory. Familiarity with a variety of theories informs education that is efficient, strategic, and evidence-based. As part of the Academic Life in Emergency Medicine Faculty Incubator Program, a list of key education theories for junior faculty was developed. A list of key papers on theories relevant to medical education was generated using an expert panel, a virtual community of practice synthetic discussion, and a social media call for resources. A three-round, Delphi-informed voting methodology including novice and expert educators produced a rank order of the top papers. These educators identified 34 unique papers. Eleven papers described the general use of education theory, while 23 papers focused on a specific theory. The top three papers on general education theories and top five papers on specific education theory were selected and summarized. The relevance of each paper for junior faculty and faculty developers is also presented. This paper presents a reading list of key papers for junior faculty in medical education roles. Three papers about general education theories and five papers about specific educational theories are identified and annotated. These papers may help provide foundational knowledge in education theory to inform junior faculty teaching practice.

Academic Primer Series: Eight Key Papers about Education Theory

PubMed Central

Gottlieb, Michael; Boysen-Osborn, Megan; Chan, Teresa M.; Krzyzaniak, Sara M.; Pineda, Nicolas; Spector, Jordan; Sherbino, Jonathan

2017-01-01

Introduction Many teachers adopt instructional methods based on assumptions of best practices without attention to or knowledge of supporting education theory. Familiarity with a variety of theories informs education that is efficient, strategic, and evidence-based. As part of the Academic Life in Emergency Medicine Faculty Incubator Program, a list of key education theories for junior faculty was developed. Methods A list of key papers on theories relevant to medical education was generated using an expert panel, a virtual community of practice synthetic discussion, and a social media call for resources. A three-round, Delphi-informed voting methodology including novice and expert educators produced a rank order of the top papers. Results These educators identified 34 unique papers. Eleven papers described the general use of education theory, while 23 papers focused on a specific theory. The top three papers on general education theories and top five papers on specific education theory were selected and summarized. The relevance of each paper for junior faculty and faculty developers is also presented. Conclusion This paper presents a reading list of key papers for junior faculty in medical education roles. Three papers about general education theories and five papers about specific educational theories are identified and annotated. These papers may help provide foundational knowledge in education theory to inform junior faculty teaching practice. PMID:28210367

Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus.

PubMed

Stubbs, Amber; Uzuner, Özlem

2015-12-01

The 2014 i2b2/UTHealth natural language processing shared task featured a track focused on the de-identification of longitudinal medical records. For this track, we de-identified a set of 1304 longitudinal medical records describing 296 patients. This corpus was de-identified under a broad interpretation of the HIPAA guidelines using double-annotation followed by arbitration, rounds of sanity checking, and proof reading. The average token-based F1 measure for the annotators compared to the gold standard was 0.927. The resulting annotations were used both to de-identify the data and to set the gold standard for the de-identification track of the 2014 i2b2/UTHealth shared task. All annotated private health information were replaced with realistic surrogates automatically and then read over and corrected manually. The resulting corpus is the first of its kind made available for de-identification research. This corpus was first used for the 2014 i2b2/UTHealth shared task, during which the systems achieved a mean F-measure of 0.872 and a maximum F-measure of 0.964 using entity-based micro-averaged evaluations. Copyright © 2015 Elsevier Inc. All rights reserved.

Bibliography of Forestry in Puerto Rico

Treesearch

Menandra Mosquera; JoAnne Feheley; [Compilers

1984-01-01

Lists 1,357 publications, with annotations and subject and author indexes, issued about Puerto Rico's forestry and related activities. Also included is an appendix, chronologically listing the forestry highlights from 1513 through 1978.

Choosing a Top Ten.

ERIC Educational Resources Information Center

IUCN Bulletin, 1984

1984-01-01

Presents an annotated list of 34 animals and 32 plants which are candidates for a list of the top 10 endangered species. Also presents the criteria used to formulate these lists. They include the conservation value (urgency prominance, biological value) and operational considerations (such as cost factors) for each species. (JN)

Modeling loosely annotated images using both given and imagined annotations

NASA Astrophysics Data System (ADS)

Tang, Hong; Boujemaa, Nozha; Chen, Yunhao; Deng, Lei

2011-12-01

In this paper, we present an approach to learn latent semantic analysis models from loosely annotated images for automatic image annotation and indexing. The given annotation in training images is loose due to: 1. ambiguous correspondences between visual features and annotated keywords; 2. incomplete lists of annotated keywords. The second reason motivates us to enrich the incomplete annotation in a simple way before learning a topic model. In particular, some ``imagined'' keywords are poured into the incomplete annotation through measuring similarity between keywords in terms of their co-occurrence. Then, both given and imagined annotations are employed to learn probabilistic topic models for automatically annotating new images. We conduct experiments on two image databases (i.e., Corel and ESP) coupled with their loose annotations, and compare the proposed method with state-of-the-art discrete annotation methods. The proposed method improves word-driven probability latent semantic analysis (PLSA-words) up to a comparable performance with the best discrete annotation method, while a merit of PLSA-words is still kept, i.e., a wider semantic range.

Astronomy Books of 1985: The Technical List.

ERIC Educational Resources Information Center

Fraknoi, Andrew

1986-01-01

Consists of the second part of the 1985 annotated review of technical books done by the Astronomical Society of the Pacific. This listing was primarily designed for graduate students or research scientists. (TW)

Libros de Ciencias en Espanol.

ERIC Educational Resources Information Center

Schon, Isabel

1997-01-01

Presents an annotated list of recently published science trade books in Spanish that can engage students in a variety of science concepts. Books are listed in the categories of biology, ecology, general science, and technology. (JRH)

Keep Up the Good Work! Part III: Using Multimedia To Build Reading Fluency and Enjoyment.

ERIC Educational Resources Information Center

Glasgow, Jacqueline N.

1997-01-01

Discusses building fluency in reading and writing and teaching students to read and write for pleasure. Highlights include multimedia storyboards; bilingual instruction; writing programs for building fluency; CD-ROM storyboards; student-created storyboards; and an annotated bibliography of CD-ROM storyboards, poetry collections, and composing…

Active Reading Experience Questionnaire: Development and Validation of an Instrument for Studying Active Reading Activities

ERIC Educational Resources Information Center

Palilonis, Jennifer; Butler, Darrell

2015-01-01

The increasing adoption of mobile platforms and digital textbooks in university classrooms continues to have a profound impact on higher education. Advocates believe that providing students digital textbooks with built-in annotation features and interactive study tools will improve learning by facilitating active reading, a task essential to…

The Reading-Writing Connection: An Overview and Annotated Bibliography.

ERIC Educational Resources Information Center

Malinowski, Patricia A.

Addressing the need for developmental or remedial reading and writing courses at the college level, this paper provides a broad perspective on the strengthening of such programs for students deficient in these skills. The paper first enumerates various reasons for developing reading-writing courses for pre-college students, then provides evidence…

Annotated Videography.

ERIC Educational Resources Information Center

United States Holocaust Memorial Museum, Washington, DC.

This annotated list of 43 videotapes recommended for classroom use addresses various themes for teaching about the Holocaust, including: (1) overviews of the Holocaust; (2) life before the Holocaust; (3) propaganda; (4) racism, anti-Semitism; (5) "enemies of the state"; (6) ghettos; (7) camps; (8) genocide; (9) rescue; (10) resistance;…

Workforce Reductions. An Annotated Bibliography.

ERIC Educational Resources Information Center

Hickok, Thomas A.; Hickok, Thomas A.

This report, which is based on a review of practitioner-oriented sources and scholarly journals, uses a three-part framework to organize annotated bibliographies that, together, list a total of 104 sources that provide the following three perspectives on work force reduction issues: organizational, organizational-individual relationship, and…

Appalachian Women. An Annotated Bibliography.

ERIC Educational Resources Information Center

Hamm, Mary Margo

This bibliography compiles annotations of 178 books, journal articles, ERIC documents, and dissertations on Appalachian women and their social, cultural, and economic environment. Entries were published 1966-93 and are listed in the following categories: (1) authors and literary criticism; (2) bibliographies and resource guides; (3) economics,…

Legal Information Sources: An Annotated Bibliography.

ERIC Educational Resources Information Center

Conner, Ronald C.

This 25-page annotated bibliography describes the legal reference materials in the special collection of a medium-sized public library. Sources are listed in 12 categories: cases, dictionaries, directories, encyclopedias, forms, references for the lay person, general, indexes, laws and legislation, legal research aids, periodicals, and specialized…

Selected and Annotated Bibliography on the Processes of Change.

ERIC Educational Resources Information Center

Kurland, Norman D., Comp.; Miller, Richard I., Comp.

Over 170 books, booklets, articles, bibliographies, periodicals, and unpublished items on anthropology, sociology, education, industry, and technology, medicine, political science, and psychology are listed in this annotated bibliography on the processes of change. These documents, which treat such subjects as educational change, social and…

Religion and Communication: A Selected, Annotated Basic Bibliography.

ERIC Educational Resources Information Center

Tate, Eugene D.; McConnell, Kathleen

This annotated bibliography provides a broad perspective on the way religion and communication relate to one another. Forty-two references are listed in the areas of (1) "Religion and Communication Theory"; (2) "Religion and Language"; (3) "Televangelism and Televangelists"; (4) "Historical Roots of Religion and…

Education--An Annotated Bibliography of Current Issues. April-June, 1989.

ERIC Educational Resources Information Center

Wardell, David

This annotated bibliography lists articles about educational issues that were published in Japanese periodicals from April through June 1989. Most are taken from the "Japan Times,""Daily Yomiuri,""Mainichi Daily News," and "Asahi Evening News"; however, articles also originate from "USAToday," the…

Education--An Annotated Bibliography of Current Issues, January-March 1990.

ERIC Educational Resources Information Center

Wardell, David

This annotated bibliography lists articles about educational issues that were published in Japanese periodicals from January through March 1990. The vast majority of articles are taken from the "Japan Times,""Daily Yomiuri,""Mainichi Daily," and "Asahi Evening." However, articles are also taken from…

Articles on Mass Communication in U.S. and Foreign Journals: A Selected Annotated Bibliography--January, February, March 1979.

ERIC Educational Resources Information Center

McKerns, Joseph P.; Delahaye, Alfred N.

1979-01-01

Lists and annotates more than 200 articles on mass communication, grouped according to topic. Topics include advertising, broadcasting, courts and law, government and media, history and biography, international, management, public relations, and visual communication. (GT)

Reading in Marine Science, A Partially Annotated Bibliography for Young Readers, Nonprofessionals, and Teachers.

ERIC Educational Resources Information Center

Oregon State Univ., Corvallis. Dept. of Oceanography.

Included is a partially annotated bibliography of mostly non-technical books for non-professional readers, young readers, and teachers. There are about 300 entries grouped into these subjects: general references, historical and exploration, biological oceanography, chemical oceanography, geological oceanography, and physical oceanography. (PR)

Complete Genome Sequence of Listeria monocytogenes DFPST0073, Isolated from Imported Mexican Soft Cheese.

PubMed

Salazar, Joelle K; Gonsalves, Lauren J; Schill, Kristin M; Sanchez Leon, Maria; Anderson, Nathan; Keller, Susanne E

2018-06-07

The genome of Listeria monocytogenes strain DFPST0073, isolated from imported fresh Mexican soft cheese in 2003, was sequenced using the Illumina MiSeq platform. Reads were assembled using SPAdes, and genome annotation was performed using the NCBI Prokaryotic Genome Annotation Pipeline.

Annotated Psychodynamic Bibliography for Residents in Psychiatry

PubMed Central

CALIGOR, EVE

1996-01-01

The author provides an annotated bibliography to introduce psychodynamic psychotherapy and psychoanalysis to residents in psychiatry. The emphasis of the selection is on relevance to practice. The entries are grouped by topic, levels of difficulty are noted, and readings are identified as being of either current or historic relevance. PMID:22700303

Best Books of 1977

ERIC Educational Resources Information Center

Gerhardt, Lillian N.; And Others

1977-01-01

School Library Journal book review editors have selected and annotated their choices for the best children's and young adults' books from those books that were submitted for review during 1977 by general book trade book publishers. Included in the annotations are: author, title, publisher, price, and recommended reading and interest levels. (JPF)

Ethical Responsibility in Communication: A Selected, Annotated Bibliography. Fourth Edition.

ERIC Educational Resources Information Center

Johannesen, Richard L.

Representing works published between 1970 and 1984, this annotated bibliography identifies a variety of readings that explore fundamental issues of ethics in interpersonal, public, and mass communication, and that examine from an ethical viewpoint how to and whether to employ particular communication tactics or techniques. The bibliography…

Automated analysis and reannotation of subcellular locations in confocal images from the Human Protein Atlas.

PubMed

Li, Jieyue; Newberg, Justin Y; Uhlén, Mathias; Lundberg, Emma; Murphy, Robert F

2012-01-01

The Human Protein Atlas contains immunofluorescence images showing subcellular locations for thousands of proteins. These are currently annotated by visual inspection. In this paper, we describe automated approaches to analyze the images and their use to improve annotation. We began by training classifiers to recognize the annotated patterns. By ranking proteins according to the confidence of the classifier, we generated a list of proteins that were strong candidates for reexamination. In parallel, we applied hierarchical clustering to group proteins and identified proteins whose annotations were inconsistent with the remainder of the proteins in their cluster. These proteins were reexamined by the original annotators, and a significant fraction had their annotations changed. The results demonstrate that automated approaches can provide an important complement to visual annotation.

Wind turbine acoustics research bibliography with selected annotation

NASA Technical Reports Server (NTRS)

Hubbard, Harvey H.; Shepherd, Kevin P.

1988-01-01

Citations of documents are included, which represent the state-of-the-art of technology in each of the following acoustics subject areas: Prediction of Wind Turbine Noise; Acoustic Measurements for Wind Tunnels; Effect of Wind Turbine Noise on Building Structures, People and Communities; Atmospheric Propagation; and Measurement Technology Including Wind Screens. Documents are listed in chronological order in each section of the paper, with key documents and associated annotation listed first. The sources are given along with acquisition numbers, when available, to expedite the acquisition of copies of the documents.

Advisory List of Instructional Media for Mathematics. 1979-80 School Year.

ERIC Educational Resources Information Center

North Carolina State Dept. of Public Instruction, Raleigh. Div. of Educational Media.

This annotated bibliography from the Materials Review and Evaluation Services lists reviewed and evaluated instructional media appropriate for school media centers in the area of mathematics. Entries included on the list were selected from those materials submitted by publishers which received favorable reviews by educators. Materials are arranged…

Jewish Studies: A Guide to Reference Sources.

ERIC Educational Resources Information Center

McGill Univ., Montreal (Quebec). McLennan Library.

An annotated bibliography to the reference sources for Jewish Studies in the McLennan Library of McGill University (Canada) is presented. Any titles in Hebrew characters are listed by their transliterated equivalents. There is also a list of relevant Library of Congress Subject Headings. General reference sources listed are: encyclopedias,…

Confluent/Humanistic/Affective Education: A Set of Bibliographies.

ERIC Educational Resources Information Center

Tolliver, J. Howard

Over 250 journal articles, ERIC documents, dissertations, and books dealing with confluent, humanistic, and affective education are listed in this annotated bibliography. Journal articles comprise those published since 1975. Other earlier works listed are considered of major importance in the field. The resources are listed under five categories:…

Articles on Mass Communication in U.S. and Foreign Journals: A Selected Annotated Bibliography--July, August, September 1979.

ERIC Educational Resources Information Center

Delahaye, Alfred N.; McKerns, Joseph P.

1979-01-01

Lists and annotates more than 200 articles on mass communication, grouped according to topic. Topics include advertising, broadcasting, courts and law, journalism education, history and biography, international, public relations, visual communication, and women and media. (GT)

Sexually Transmitted Diseases: A Selective, Annotated Bibliography.

ERIC Educational Resources Information Center

Planned Parenthood Federation of America, Inc., New York, NY. Education Dept.

This document contains a reference sheet and an annotated bibliography concerned with sexually transmitted diseases (STD). The reference sheet provides a brief, accurate overview of STDs which includes both statistical and background information. The bibliography contains 83 entries, listed alphabetically, that deal with STDs. Books and articles…

Biography. Advisory List of Instructional Media.

ERIC Educational Resources Information Center

North Carolina State Dept. of Public Instruction, Raleigh. Div. of Media Evaluation Service.

The 65 biographies reviewed in this annotated bibliography are suitable for readers in grades pre-kindergarten through 12. Full bibliographic data, appropriate grade level indication, and annotations are supplied for each entry. The names and addresses of the publishers are also provided. Biographies of women, children, authors, actors, historical…

A Selective, Annotated Bibliography for the Language Laboratory, 1959-1971.

ERIC Educational Resources Information Center

Keck, Mary Ellen B., Comp.; Smith, William Flint, Comp.

This annotated bibliography lists 163 selected books, articles, and research reports concerning the language laboratory published from 1959 to 1972. It is intended for foreign language teachers and administrators seeking information on the planning, administration, operation, and installation of mediated language instruction. The bibliography is…

Education--An Annotated Bibliography of Current Issues, April-June, 1990.

ERIC Educational Resources Information Center

Wardell, David

This annotated bibliography lists articles about education issues that were published in periodicals from April through June 1990. The vast majority of the articles are taken from the "Japan Times,""Daily Yomiuri,""Mainichi Daily," and "Asahi Evening." However, articles were also included from "USA…

Persuasion: Attitude/Behavior Change. A Selected, Annotated Bibliography.

ERIC Educational Resources Information Center

Benoit, William L.

Designed for teachers, students and researchers of the psychological dimensions of attitude and behavior change, this annotated bibliography lists books, bibliographies and articles on the subject ranging from general introductions and surveys through specific research studies, and from theoretical position essays to literature reviews. The 42…

Articles on Mass Communication in U.S. and Foreign Journals: A Selected Annotated Bibliography--April, May, June 1979.

ERIC Educational Resources Information Center

McKerns, Joseph P.; Delahaye, Alfred N.

1979-01-01

Lists and annotates 200 articles on mass communication, grouped according to topic. Topics include advertising, audience and communicator analysis, broadcasting, courts and law, education for journalism, government and media, international, management, public relations, and visual communication. (GT)

Fifty years of forestry research: annotated bibliography of the Pacific Southwest Forest and Range Experiment Station, 1926-1975

Treesearch

Vincent P. Aitro

1977-01-01

Lists 2905 publications, with annotations and subject and author indexes, issued during the first 50 years of the Pacific Southwest Forest and Range Experiment Station (formerly the California Forest and Range Experiment Station), headquartered at Berkeley, California.

Adult Literacy in Developing Countries: A Contemporary Annotated Bibliography.

ERIC Educational Resources Information Center

Puchner, Laurel D.

This bibliography provides a list of 65 selected works on the topic of adult literacy in developing countries. It is a contemporary list, including only works published in the last 15 years. The works are organized into subject categories. Works are listed only once; in cases where a work could be listed under more than one category, it is listed…

Going Blended with a Triple-Entry Activity: Students' Online Discussions of Assigned Readings Using "Marginalia"

ERIC Educational Resources Information Center

Kanevsky, Lannie; Xin, Cindy; Ram, Ilana

2016-01-01

In this paper, we describe and investigate small group discussions of assigned readings in an online version of a "triple-entry activity" in a blended course used an annotation tool, "Marginalia". We wondered if students would interact in this structured, critical, reflective reading activity as effectively online as they had…

The Effect of Critical Reading Strategies on EFL Learners' Recall and Retention of Collocations

ERIC Educational Resources Information Center

NematTabrizi, Amir Reza; Saber, Mehrnoush Akhavan

2016-01-01

The study was an attempt to measure the effect of critical reading strategies, namely; re-reading, questioning and annotating on recall and retention of collocations by intermediate Iranian EFL learners. To this end, Nelson proficiency test was administered to ninety (n = 90) Iranian EFL learners studying at Zaban Sara language institute in…

The Read-Aloud Handbook. Fourth Edition. Revised and Updated.

ERIC Educational Resources Information Center

Trelease, Jim

This new edition of a guide which has made reading aloud a special pleasure for millions of people offers a chance for a new generation of parents, teachers, grandparents, and siblings to discover the rewards--and the necessity--of reading aloud. The guide provides an up-to-date annotated bibliography ("treasury") of more than 1200…

Reading Teachers and Their Students (ERIC/RCS).

ERIC Educational Resources Information Center

Sensenbaugh, Roger

1992-01-01

Presents annotations of nine articles from the ERIC database that discuss the pedagogical relationship between reading teachers and their students. Includes articles that deal with whole-language instruction, student motivation, instructional grouping, questioning techniques, and the characteristics of effective teachers. (PRA)

Articles on Mass Communication in U.S. and Foreign Journals: A Selected Annotated Bibliography--October, November, December 1979.

ERIC Educational Resources Information Center

McKerns, Joseph P.; Delahaye, Alfred N.

1980-01-01

Lists and annotates more than 200 articles on mass communication, grouped according to topic. Topics include advertising, broadcasting, courts and law, criticism and defense of media, history and biography, international, public relations, visual communication, and women and media. (GT)

Nutrition & Adolescent Pregnancy: A Selected Annotated Bibliography.

ERIC Educational Resources Information Center

National Agricultural Library (USDA), Washington, DC.

This annotated bibliography on nutrition and adolescent pregnancy is intended to be a source of technical assistance for nurses, nutritionists, physicians, educators, social workers, and other personnel concerned with improving the health of teenage mothers and their babies. It is divided into two major sections. The first section lists selected…

An annotated checklist of the vascular flora of Washington County Mississippi

USDA-ARS?s Scientific Manuscript database

Field explorations have yielded 257 species new to Washington County, Mississippi and Calandrinia ciliata (Ruiz & Pav.) DC. and Ruellia nudiflora (Engelm. & Gray) Urban new to the state. An annotated list of 796 taxa for Washington County is provided and excludes 62 species that were reported from ...

Annual Editions: Early Childhood Education 06/07

ERIC Educational Resources Information Center

Paciorek, Karen Menke, Ed.

2006-01-01

This 27th edition of "Annual Editions: Early Childhood Education" provides convenient, inexpensive access to current articles selected from the best of the public press. Organizational features include: an annotated listing of selected World Wide Web sites; an annotated table of contents; a topic guide; a general introduction; brief overviews for…

College and University Rankings: Part 2--An Annotated Bibliography of Analysis, Criticism, and Evaluation.

ERIC Educational Resources Information Center

Hattendorf, Lynn C.

1987-01-01

This annotated bibliography of recent articles and books on academic rankings updates an article in the Spring 1986 "RQ." Items are listed by subject and ranking in general; individual guides; subject areas including accounting, advertising, biogeography, business, communications, data communications, economics, music, publishing,…

Unviersity of Rhode Island Library Reference Sources in Gerontology.

ERIC Educational Resources Information Center

Morrison, Catherine E.

Thirty-two sources in gerontology, located at the University of Rhode Island Library, are listed in this annotated bibliography as well as some interdisciplinary sources. This bibliography contains material published as recently as 1996 and includes annotations of an "Older Americans Almanac," bibliographies, a biographical dictionary,…

Work and Family Functioning: An Annotated Bibliography Selected from Family Database.

ERIC Educational Resources Information Center

Davis, Mari, Comp.

This annotated bibliography lists works published in Australia on issues regarding work obligations and family responsibilities. All works cited are included in Australia's FAMILY database. The following topics are covered: (1) adolescents and attitudes to employment (14 citations); (2) the aged and employment (20 citations); (3) career…

RADIOISOTOPE EXPERIMENTS IN HIGH SCHOOL BIOLOGY, AN ANNOTATED SELECTED BIBLIOGRAPHY.

ERIC Educational Resources Information Center

HURLBURT, EVELYN M.

SELECTED REFERENCES ON THE USE OF RADIOISOTOPES IN BIOLOGY ARE CONTAINED IN THIS ANNOTATED BIBLIOGRAPHY FOR SECONDARY SCHOOL STUDENTS. MATERIALS INCLUDED WERE PUBLISHED AFTER 1960 AND DEAL WITH THE PROPERTIES OF RADIATION, SIMPLE RADIATION DETECTION PROCEDURES, AND TECHNIQUES FOR USING RADIOISOTOPES EXPERIMENTALLY. THE REFERENCES ARE LISTED IN…

Annotated Bibliography; Freedom of Information Center Reports and Summary Papers.

ERIC Educational Resources Information Center

Freedom of Information Center, Columbia, MO.

This bibliography lists and annotates almost 400 information reports, opinion papers, and summary papers dealing with freedom of information. Topics covered include the nature of press freedom and increased press efforts toward more open access to information; the press situation in many foreign countries, including France, Sweden, Communist…

Health Communication and Literacy: An Annotated Bibliography.

ERIC Educational Resources Information Center

Beveridge, Jennifer

This annotated bibliography lists publications and World Wide Web sites dealing with health communication and literacy. The 51 publications, which were all published between 1982 and 1998, contain information about and/or for use in the following areas: assessment, assessment tools, elderly adults, empowerment, maternal and child health, patient…

Traumatic Brain Injury and Special Education: An Information Resource Guide.

ERIC Educational Resources Information Center

Stevens, Alice M.

This resource guide of annotated references on traumatic brain injury (TBI) was created to help educators locate information from such disciplines as neurology, neuropsychology, rehabilitation, and pediatric medicine. Twenty-four resources published from 1990 to 1994 are listed, with annotations. The resources include research reports/reviews,…

Social Sciences of Sport: Bibliographies on Educational Topics No. 3.

ERIC Educational Resources Information Center

ERIC Clearinghouse on Teacher Education, Washington, DC.

This publication is one of a series of annotated bibliographies in physical education. There are four sections--sport history, sport psychology, sport sociology, and sport philosophy. Each section consists of a brief introduction, the annotated bibliographic entries arranged alphabetically by author, and a list of cross references for documents…

Gender, Science, and Technology: A Selected Annotated Bibliography.

ERIC Educational Resources Information Center

Eldredge, Mary; And Others

1990-01-01

Presents 196 annotated listings of works on science, technology, and gender, under 9 headings: Biography and History; Women Scientists; Science Education; Feminists Look at Science and Technology; Effects of Technology on Women; Medicine and Reproductive Technologies in Women's Lives; Women and Evolution; Women and Agriculture; and Gender,…

Microcomputers and the Media Specialist: An Annotated Bibliography.

ERIC Educational Resources Information Center

Miller, Inabeth

An overview of the literature reflecting the rapid development of interest in microcomputer use in education since 1978 is followed by an annotated bibliography which lists books, articles, and ERIC documents in nine categories. The first section includes materials of general interest--historical background, guides to using computers in the…

The Suburban Press; First Steps toward an Annotated Bibliography. Suburban Press Research Series No. 16 and 17.

ERIC Educational Resources Information Center

Northern Illinois Univ., De Kalb. Suburban Press Research Center.

This bibliography lists journal articles concerning various aspects of the suburban press. Annotated selections, arranged alphabetically according to journal title, are gathered from the following periodicals: "Advertising Age,""Business Week,""Columbia Journalism Review,""Editor and Publisher,""Grassroots Editor,""Journalism…

The Career Education Resource Center Annotated Catalog, 1978-1979.

ERIC Educational Resources Information Center

Keene, Lois, Ed.

This catalog provides an annotated list of the career education materials which may be borrowed for previewing from the Career Education Resource Center in Colorado. Covering materials of interest to educators in kindergarten through postsecondary programs, the catalog includes items produced by classroom teachers, commercial publishers, business…

Articles on Mass Communication in U.S. and Foreign Journals: A Selected Annotated Bibliography

ERIC Educational Resources Information Center

McKerns, Joseph P.; Delahaye, Alfred N.

1978-01-01

Lists and annotates 212 journal articles on mass communication, grouped according to topic. Topics include audience and communicator analysis, broadcasting, communication theory, courts and law, criticism and defense of media, journalism education, government and media, history and biography, international topics, and public relations. (GW)

Conflict Resolution and Peace Studies: An Annotated Bibliography. Ethnic Studies Bulletin, Number Nine.

ERIC Educational Resources Information Center

Connecticut Univ., Storrs. Thut (I.N.) World Education Center.

This annotated bibliography of resources dealing with conflict resolution and peace studies was compiled for the use of elementary, secondary, and college educators. The listing is alphabetical by author. Included are handbooks for teachers, course outlines, anthologies of journal articles, bibliographies of curriculum materials, background…

Your Reading: A Booklist for Junior High and Middle School Students. Sixth Edition.

ERIC Educational Resources Information Center

Christensen, Jane, Ed.

With many annotations written or edited by students, this booklist contains 3,100 citations of fiction and nonfiction publications for adolescents. Most entries were published within the past few years, although well-written older books are also included. The annotations, which include appropriate age ranges, are categorized as follows:…

Adolescent Literacy Resources: An Annotated Bibliography. Second Edition 2009

ERIC Educational Resources Information Center

Center on Instruction, 2009

2009-01-01

This annotated bibliography updated from a 2007 edition, is intended as a resource for technical assistance providers as they work with states on adolescent literacy. This revision includes current research and documents of practical use in guiding improvements in grades 4-12 reading instruction in the content areas and in interventions for…

Students' Framing of a Reading Annotation Tool in the Context of Research-Based Teaching

ERIC Educational Resources Information Center

Dahl, Jan Erik

2016-01-01

In the studied master's course, students participated both as research objects in a digital annotation experiment and as critical investigators of this technology in their semester projects. The students' role paralleled the researcher's role, opening an opportunity for researcher-student co-learning within what is often referred to as…

Developmental relations between reading fluency and reading comprehension: A longitudinal study from grade one to two

PubMed Central

Kim, Young-Suk; Wagner, Richard K.; Lopez, Danielle

2012-01-01

From a developmental framework, relations among list reading fluency, oral and silent reading fluency, listening comprehension, and reading comprehension might be expected to change as children’s reading skills develop. We examined developmental relations among these constructs in a latent-variable longitudinal study of first- and second-grade students. Results showed that list reading fluency was uniquely related to reading comprehension in grade one, but not in grade two after accounting for text reading fluency (oral or silent) and listening comprehension. In contrast, text reading fluency was uniquely related to reading comprehension in grade two, but not in grade one, after accounting for list reading fluency and listening comprehension. When oral and silent reading fluency were compared, oral reading fluency was uniquely related to reading comprehension after accounting for silent reading fluency in grade one whereas in grade two, silent reading fluency was uniquely related to reading comprehension after accounting for oral reading fluency. PMID:22726256

Comparison of the Equine Reference Sequence with Its Sanger Source Data and New Illumina Reads

PubMed Central

Rebolledo-Mendez, Jovan; Hestand, Matthew S.; Coleman, Stephen J.; Zeng, Zheng; Orlando, Ludovic; MacLeod, James N.; Kalbfleisch, Ted

2015-01-01

The reference assembly for the domestic horse, EquCab2, published in 2009, was built using approximately 30 million Sanger reads from a Thoroughbred mare named Twilight. Contiguity in the assembly was facilitated using nearly 315 thousand BAC end sequences from Twilight’s half brother Bravo. Since then, it has served as the foundation for many genome-wide analyses that include not only the modern horse, but ancient horses and other equid species as well. As data mapped to this reference has accumulated, consistent variation between mapped datasets and the reference, in terms of regions with no read coverage, single nucleotide variants, and small insertions/deletions have become apparent. In many cases, it is not clear whether these differences are the result of true sequence variation between the research subjects’ and Twilight’s genome or due to errors in the reference. EquCab2 is regarded as “The Twilight Assembly.” The objective of this study was to identify inconsistencies between the EquCab2 assembly and the source Twilight Sanger data used to build it. To that end, the original Sanger and BAC end reads have been mapped back to this equine reference and assessed with the addition of approximately 40X coverage of new Illumina Paired-End sequence data. The resulting mapped datasets identify those regions with low Sanger read coverage, as well as variation in genomic content that is not consistent with either the original Twilight Sanger data or the new genomic sequence data generated from Twilight on the Illumina platform. As the haploid EquCab2 reference assembly was created using Sanger reads derived largely from a single individual, the vast majority of variation detected in a mapped dataset comprised of those same Sanger reads should be heterozygous. In contrast, homozygous variations would represent either errors in the reference or contributions from Bravo's BAC end sequences. Our analysis identifies 720,843 homozygous discrepancies between new, high throughput genomic sequence data generated for Twilight and the EquCab2 reference assembly. Most of these represent errors in the assembly, while approximately 10,000 are demonstrated to be contributions from another horse. Other results are presented that include the binary alignment map file of the mapped Sanger reads, a list of variants identified as discrepancies between the source data and resulting reference, and a BED annotation file that lists the regions of the genome whose consensus was likely derived from low coverage alignments. PMID:26107638

Newspaper Indexes, Guides, Directories, and Union Lists. No. 4.

ERIC Educational Resources Information Center

Fikes, Robert, Jr.

This annotated bibliography lists 52 citations for U.S. and foreign newspaper indexes, summaries, guides and directories, and union lists held by San Diego State University Libraries. Entries are arranged alphabetically in the above categories by main entry, followed by imprint, frequency and/or date of publication, volumes held by the library,…

Websites for Primary Sources and Civics Education

ERIC Educational Resources Information Center

Rulli, Daniel

2005-01-01

This article features a list of websites for primary sources and civics education. The World Wide Web has become an excellent source for facsimiles, images, and transcriptions of primary sources. As it would be impossible to provide a comprehensive list of all the sites, this annotated list highlights selective sites that provide access to…

Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species

DOE PAGES

Johnson, Shannon L.; Daligault, Hajnalka E.; Davenport, Karen W.; ...

2015-04-30

In 2011, the Association of Analytical Communities (AOAC) International released a list of Bacillus strains relevant to biothreat molecular detection assays. Presented in this document are the complete and annotated genome assemblies for the 15 strains listed on the inclusivity panel, as well as the 20 strains listed on the exclusivity panel.

Educating for Peace: A Resource Guide for Teachers and Community Workers.

ERIC Educational Resources Information Center

Educating for Peace, Ottawa (Ontario).

This resource guide provides educators and community workers with a listing of written materials, audio-visual materials, and Ottawa-Carleton (Canada) area speakers dealing with peace education. The first of three parts lists 27 books, kits, and curriculum materials. For each listing, appropriate grade level, annotation, ordering address, and…

The Great Books and Economics.

ERIC Educational Resources Information Center

Hartley, James E.

2001-01-01

Describes an introductory economics course in which all of the reading material is drawn from the Great Books of Western Civilization. Explains the rationale and mechanics of the course. Includes an annotated course syllabus that details how the reading material relates to the lecture material. (RLH)

Sonic-boom research: Selected bibliography with annotation

NASA Technical Reports Server (NTRS)

Hubbard, H. H.; Maglieri, D. J.; Stephens, D. G.

1986-01-01

Citations of selected documents are included which represent the state of the art of technology in each of the following subject areas: prediction, measurement, and minimization of steady-flight sonic booms; prediction and measurement of accelerating-flight sonic booms; sonic-boom propagation; the effects of sonic booms on people, communities, structures, animals, birds, and terrain; and sonic-boom simulator technology. Documents are listed in chronological order in each section of the paper, with key documents and associated annotation listed first. The sources are given along with acquisition numbers, when available, to expedite the acquisition of copies of the documents.

A Librarian's Primer on Financial Ratios.

ERIC Educational Resources Information Center

Kerbel, Sandra Sandor

1982-01-01

Explains in simple terms the nature and function of a number of basic types of business and industrial financial ratios. An annotated list of five basic sources for ratios is included and a reference list and bibliography are attached. (JL)

Water Conservation Resource List.

ERIC Educational Resources Information Center

NJEA Review, 1981

1981-01-01

Alarmed by the growing water shortage, the New Jersey State Office of Dissemination has prepared this annotated list of free or inexpensive instructional materials for teaching about water conservation, K-l2. A tipsheet for home water conservation is appended. (Editor/SJL)

An Annotated Partial List of Science-Related Computer Bulletin Board Systems.

ERIC Educational Resources Information Center

Journal of Student Research, 1990

1990-01-01

A list of science-related computer bulletin board systems is presented. Entries include geographic area, phone number, and a short explanation of services. Also included are the addresses and phone numbers of selected commercial services. (KR)

United Nations and Other International Organizations.

ERIC Educational Resources Information Center

Negaard, Chere; Carter, Laura Lee

1992-01-01

This annotated bibliography lists 124 documents published in 1991 by the United Nations and other international organizations that address a wide range of topics, including development, the environment, disarmament, Africa, and women. U.S. distributors for these documents are listed. (MES)

Towards a complete map of the human long non-coding RNA transcriptome.

PubMed

Uszczynska-Ratajczak, Barbara; Lagarde, Julien; Frankish, Adam; Guigó, Roderic; Johnson, Rory

2018-05-23

Gene maps, or annotations, enable us to navigate the functional landscape of our genome. They are a resource upon which virtually all studies depend, from single-gene to genome-wide scales and from basic molecular biology to medical genetics. Yet present-day annotations suffer from trade-offs between quality and size, with serious but often unappreciated consequences for downstream studies. This is particularly true for long non-coding RNAs (lncRNAs), which are poorly characterized compared to protein-coding genes. Long-read sequencing technologies promise to improve current annotations, paving the way towards a complete annotation of lncRNAs expressed throughout a human lifetime.

The Effects of Literacy Support Tools on the Comprehension of Informational e-Books and Print-Based Text

ERIC Educational Resources Information Center

Herman, Heather A.

2017-01-01

This mixed methods research explores the effects of literacy support tools to support comprehension strategies when reading informational e-books and print-based text with 14 first-grade students. This study focused on the following comprehension strategies: annotating connections, annotating "I wonders," and looking back in the text.…

Expressive Therapies, the ARTS and the Exceptional Child. (An Annotated Bibliography).

ERIC Educational Resources Information Center

Minar, Virginia, Comp.; And Others

The annotated bibliography lists approximately 500 citations (1967-1978) regarding the arts and exceptional children in preschool through grade 8. It is explained that the bibliography was designed to provide concrete material and ideas for teachers and therapists working with exceptional children in mainstreamed, resource room, or special class…

The Middle East: An Annotated Bibliography of Literature for Children (with Supplement).

ERIC Educational Resources Information Center

Maehr, Jane

The goal of this collection is to present an annotated bibliographical listing of children's literature, written in English, about the Middle Eastern countries of Iran, Iraq, Israel, Jordan, Kuwait, Lebanon, Saudi Arabia, Syria, Turkey, the United Arab Republic (Egypt), and other countries located near the Persian Gulf. The bibliographic entries…

Questionnaires for research: an annotated bibliography on design, construction, and use.

Treesearch

Dale R. Potter; Kathryn M. Sharpe; John C. Hendee; Roger N. Clark

1972-01-01

Questionnaires as social science tools are used increasingly to study people aspects of outdoor recreation and other natural resource fields. An annotated bibliography including subjective evaluations of each article and a keyword list is presented for 193 references to aid researchers and managers in the design, construction, and use of mail questionnaires.

Teleconferencing, an annotated bibliography, volume 3

NASA Technical Reports Server (NTRS)

Shervis, K.

1971-01-01

In this annotated and indexed listing of works on teleconferencing, emphasis has been placed upon teleconferencing as real-time, two way audio communication with or without visual aids. However, works on the use of television in two-way or multiway nets, data transmission, regional communications networks and on telecommunications in general are also included.

Association for Teacher Education in Europe (ATEE) Seminar on Practical Experience in Teacher Education (Gargnano, Italy, June 28-July 1, 1995). Select Annotated Bibliography.

ERIC Educational Resources Information Center

Macrae, Sheila, Comp.; Manning, Patricia, Comp; Moon, Bob, Comp.

1996-01-01

This annotated bibliography offers information from presentations at a 1995 seminar on practical teaching experience in preservice teacher education programs throughout Europe. Each entry includes a brief abstract of the presentation and a list of keywords. (SM)

Ethical Issues in Health Services: A Report and Annotated Bibliography.

ERIC Educational Resources Information Center

Carmody, James

This publication identifies, discusses, and lists areas for further research for five ethical issues related to health services: 1) the right to health care; 2) death and euthanasia; 3) human experimentation; 4) genetic engineering; and, 5) abortion. Following a discussion of each issue is a selected annotated bibliography covering the years 1967…

Job Creation in Rural Areas: A Select Annotated Bibliography.

ERIC Educational Resources Information Center

Pankratz, John

1989-01-01

This annotated bibliography is designed to assist rural leaders seeking ways to effectively structure successful job development projects in their communities. The 120 entries are listed in the main body alphabetically by author, and are grouped in the index into categories reflecting Thomas's "seven hallmarks of successful rural development": (1)…

Novels and Short Stories about Work: An Annotated Bibliography.

ERIC Educational Resources Information Center

Koziol, Kenneth G.

This document contains an annotated list of novels and short stories written in English or available in translation that teachers can use to help students at the secondary and college levels think critically about the world of work. The categories by which they are organized are as follows: agriculture, business, career (choices, paths, and…

Ethical Issues in Social Work. An Annotated Bibliography.

ERIC Educational Resources Information Center

Elliott, Martha W., Comp.

Designed as a practical aid to social work students and practitioners interested in approaching the ethical issues inherent in social work practice, this annotated bibliography lists over 500 books and articles, most of which were published between 1970 and 1983. The bibliography has two main parts, of which the first consists of selections from…

Recent Literature Shows Accelerated Growth in Hypermedia Tools: An Annotated Bibliography.

ERIC Educational Resources Information Center

Gabbard, Ralph

1994-01-01

Presents an annotated bibliography of materials on hypertext/hypermedia. Information available on the World Wide Web is described; journals that cover hypermedia are listed; and the main bibliography is divided into 3 sections on general hypertext applications (17 titles), DOS/Windows applications (17 titles), and HyperCard applications (18…

A Selected Annotated Bibliography on the Analysis of Water Resources System, Volume 2.

ERIC Educational Resources Information Center

Kriss, Carol; And Others

Presented is an annotated bibliography of some recent selected publications pertaining to the application of systems analysis techniques for defining and evaluating alternative solutions to water resource problems. Both subject and author indices are provided. Keywords are listed at the end of each abstract. The abstracted material emphasizes the…

The Human Side of Knowledge Management: An Annotated Bibliography.

ERIC Educational Resources Information Center

Mayer, Pamela S.

This annotated bibliography lists books and articles that have direct application to managing the human side of knowledge acquisition, transfer, and application. What is meant by the human dimension of knowledge is how motivation and learning affect the acquisition and transfer of knowledge and how group dynamics mediate the role of knowledge in…

Brothers and Sisters of Children with Disabilities: An Annotated Bibliography. Families as Allies Project.

ERIC Educational Resources Information Center

Smieja, Linda L.; And Others

This annotated bibliography provides a comprehensive review of literature focusing on brothers and sisters of children with emotional disorders. Some material addressing brothers and sisters of children who have physical, mental, or developmental disabilities is also included. The bibliography lists approximately 80 references covering a 10-year…

78 FR 31815 - National Organic Program (NOP); Amendments to the National List of Allowed and Prohibited...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-28

... opposed the use of genetically modified organisms (GMOs), which is outside the scope of this rulemaking... consideration of the comments received, AMS determined that the substance's use annotation should be modified..., the use annotation for paragraph (i)(8) was modified as follows: ``Also permitted in hydrogen peroxide...

Banned Books; 387 B.C. to 1978 A.D.

ERIC Educational Resources Information Center

Haight, Anne Lyon; Grannis, Chandler B.

The first half of this volume presents an introductory essay defining the First Amendment and the legal aspects of censorship, and offers an annotated list of books that have been banned at various times throughout history. The annotations, arranged according to the birth dates of the authors, include a chronological account of the censorship…

Articles on Mass Communication in U.S. and Foreign Journals: A Selected Annotated Bibliography--January, February, March 1980.

ERIC Educational Resources Information Center

McKerns, Joseph P.; Delahaye, Alfred N.

1980-01-01

Lists and annotates more than 250 articles on mass communication, grouped according to topic. Topics include advertising, audience and communicator analysis, broadcasting, community journalism, courts and law, criticism and defense of media, education for journalism, history and biography, international, management, public relations, visual…

Bibliography of Law-Related Curriculum Materials: Annotated (Second Edition). Working Notes No. 10.

ERIC Educational Resources Information Center

Davison, Susan E., Ed.

This annotated bibliography cites over 1,000 elementary- and secondary-level materials dealing with the philosophy, substance, and pedagogy of law-related education. It lists textbooks, curriculum kits and guides, journals and newsletters, and books that can serve as reference or supplementary materials. The bibliography is divided by topic into…

An annotated list of the flora of the Bisley Area Luquillo Experimental Forest, Puerto Rico 1987 to 1992

Treesearch

Jesus Danilo Chinea; Renee J. Beymer; Carlos Rivera; Ines Sastre de Jeses; F.N. Scatena

1993-01-01

Known species of plants, including bryophytes and ferns, are listed for the area of the Bisley experimental watershed area, a subtropical wet forest in the Luquillo Mountains of northeastern Puerto Rico.

Teaching of Chemical Literature: A List of Audiovisual Materials. Part 2.

ERIC Educational Resources Information Center

Douville, Judith A.

1983-01-01

Provides an annotated list of 36 items for teaching the use of the chemical literature including price, address of suppliers, description and/or published evaluations whenever available. Materials include slides, audiocassettes, films, filmstrips, graphs, photographs, and videocassettes. (JM)

A Bibliography of Basic Books on Atomic Energy

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

This booklet lists selected commercially published books for the general public on atomic energy and closely related subjects. Books for young readers have school grade annotations.This booklet contains an author index, a title index, and a list of publishers’ addresses.

An Annotated List of Marine Stations Suitable for Field Courses in Carbonate Geology and Tropical Marine Sciences.

ERIC Educational Resources Information Center

Kaplan, Eugene H.

1980-01-01

Listed are field stations in the Caribbean and Florida-Bahamas which are suitable for classes in field geology and tropical marine science. Each field station is described by listing the name of the institution, description of accommodations, library facilities, laboratory facilities, boats, classrooms, motor vehicles, study areas, scuba, and…

MARINE SCIENCE FILM CATALOG. MOVIES, FILMSTRIPS, AND SLIDES.

ERIC Educational Resources Information Center

CHAPMAN, FRANK L.

THIS CATALOG CONTAINS ANNOTATED LISTINGS OF 16MM. FILMS, 35MM. FILMSTRIPS, AND 35MM. SLIDES FOR INSTRUCTIONAL USE IN THE MARINE SCIENCES. PARTS 1, 2, AND 3 LIST THOSE WHICH ARE AVAILABLE FROM THE CARTERET COUNTY MARINE SCIENCE PROJECT, AN ELEMENTARY AND SECONDARY EDUCATION ACT TITLE III PROJECT. PART 4 LISTS A-V MATERIALS AVAILABLE ON FREE LOAN…

Special Project Grants Awarded for Improvement in Nurse Training. A Listing.

ERIC Educational Resources Information Center

National Institutes of Health (DHEW), Bethesda, MD. Div. of Nursing.

This current directory lists alphabetically by state, special projects funded by the Title II Nurse Training Act of the Health Manpower Act of 1968, which are awarded for improvement programs in nurse training. Projects funded through June 1971 are listed and briefly annotated, including planning grants awarded for the first time during the fiscal…

Record of Current Educational Publications. Bulletin, 1925, No. 14

ERIC Educational Resources Information Center

Bureau of Education, Department of the Interior, 1925

1925-01-01

This bulletin contains a classified and annotated list of current educational publications received by the library of the Bureau of Education to April 1, 1925. The last preceding list in this series of records was issued as Bulletin, 1924, No. 27 and comprised publications received by the Bureau of Education to June 1, 1924. The listing includes…

Celebrating Children's Choices: 25 Years of Children's Favorite Books.

ERIC Educational Resources Information Center

Post, Arden DeVries

This book provides the background and development of the Children's Choices project and highlights many of the best known and most popular books that have appeared on the Children's Choices list over the past 25 years. Each book selection features a picture of the book jacket, an annotation from the Choices list, a list of classroom applications,…

A Listing of Exhibit Items for the Materials Fair, August 12-15, 1975.

ERIC Educational Resources Information Center

Atlanta Teacher Corps Consortium, GA.

This list of materials from a Teacher Corps Materials Fair is basically intended for use by teacher educators, and includes items dealing with many important aspects of teacher education. The first section is an annotated list of books, booklets, pamphlets, and papers published since 1968, some of which cover the following topics: (a) inservice…

75 FR 51919 - National Organic Program; Amendment to the National List of Allowed and Prohibited Substances...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-24

...-10-0051; NOP-10-04IR] RIN 0581-AD04 National Organic Program; Amendment to the National List of... recommendation submitted to the Secretary of Agriculture (Secretary) by the National Organic Standards Board... the annotation of one substance on the National List, methionine, to extend its use in organic poultry...

Navigating highly homologous genes in a molecular diagnostic setting: a resource for clinical next-generation sequencing.

PubMed

Mandelker, Diana; Schmidt, Ryan J; Ankala, Arunkanth; McDonald Gibson, Kristin; Bowser, Mark; Sharma, Himanshu; Duffy, Elizabeth; Hegde, Madhuri; Santani, Avni; Lebo, Matthew; Funke, Birgit

2016-12-01

Next-generation sequencing (NGS) is now routinely used to interrogate large sets of genes in a diagnostic setting. Regions of high sequence homology continue to be a major challenge for short-read technologies and can lead to false-positive and false-negative diagnostic errors. At the scale of whole-exome sequencing (WES), laboratories may be limited in their knowledge of genes and regions that pose technical hurdles due to high homology. We have created an exome-wide resource that catalogs highly homologous regions that is tailored toward diagnostic applications. This resource was developed using a mappability-based approach tailored to current Sanger and NGS protocols. Gene-level and exon-level lists delineate regions that are difficult or impossible to analyze via standard NGS. These regions are ranked by degree of affectedness, annotated for medical relevance, and classified by the type of homology (within-gene, different functional gene, known pseudogene, uncharacterized noncoding region). Additionally, we provide a list of exons that cannot be analyzed by short-amplicon Sanger sequencing. This resource can help guide clinical test design, supplemental assay implementation, and results interpretation in the context of high homology.Genet Med 18 12, 1282-1289.

A Comparison of Two Sight Word Reading Fluency Drill Formats

ERIC Educational Resources Information Center

Sullivan, Maureen; Konrad, Moira; Joseph, Laurice M.; Luu, Ken C. T.

2013-01-01

The authors compared the effects of two sight word fluency drills (i.e., reading racetrack and list drills). They used a repeated acquisition design across 8 second-grade students identified as at risk for reading difficulties. More participants performed better when they read words on the reading racetrack than on the list; however, results were…

Shakespeare on Film in the Classroom.

ERIC Educational Resources Information Center

Mullin, Michael

A course at the University of Illinois entitled "Shakespeare on Film" is discussed briefly, and an annotated list of Shakespeare films for the classroom teacher is provided in this paper. Thirteen films are listed: three versions of "Hamlet,""Henry V,""Julius Caesar," four versions of…

The Feds and the Environment.

ERIC Educational Resources Information Center

Coyle, Daniel

1979-01-01

Lists and annotates recurrent federal publications that contain basic statistical data on pollution levels and controls, natural resources and wildlife conservation, water resources supply and development, weather and ocean conditions, federal aid programs, and the environmental impact of energy development. It also lists continuing bibliographies…

Resources in Migrant Education.

ERIC Educational Resources Information Center

State Univ. of New York, Geneseo. Coll. at Geneseo. Migrant Center.

Providing an annotated listing of 206 publications on migrant education and related topics, this publication is divided into three sections: State Reports, New York State/Bureau of Migrant Education/Migrant Program Communications, and National Farmworker Information Clearinghouse (NFIC). The section "State Reports" lists evaluation reports,…

Astronomy Books of 1984: The Non-Technical List.

ERIC Educational Resources Information Center

Fraknoi, Andrew

1985-01-01

Presents an annotated list of nontechnical astronomy books in these categories: amateur astronomy; children's books; cosmology; galaxies; general astronomy; history of astronomy; life in the universe; physics and astronomy; pseudoscience; quasars and active galaxies; solar system; space exploration; stars/stellar evolution; sun; astronomy…

Selected Reference Books of 1971-72

ERIC Educational Resources Information Center

Sheehy, Eugene P.

1973-01-01

The purpose of this annotated list is to present a selection of recent scholarly and foreign works of interest to reference workers in university libraries. The citations are listed under the following headings: guide, bibliography, encyclopedias, dictionaries, newspapers, dissertations, biography, genealogy, literature, education, sociology,…

Graduate Programs and Faculty in Reading. Fourth Edition.

ERIC Educational Resources Information Center

Blomenberg, Paula, Ed.

Intended for reading teachers and consultants, students, and others who want information about the nature of graduate training programs in the field of reading, this book lists over 300 graduate reading programs offered in the United States and Canada. Institutions offering graduate programs are listed alphabetically by province for Canadian…

Adolescent Literacy and Textbooks: An Annotated Bibliography. Final Report from Carnegie Corporation of New York's Council on Advancing Adolescent Literacy

ERIC Educational Resources Information Center

Kamil, Michael

2010-01-01

Textbooks are the primary mediator of learning in academic settings. As students progress from elementary school to middle and high school, the need to read textbooks becomes ever more critical. Reading instruction has not, until recently, even begun to take this reality into account (Kamil, Lane, & Nicolls, 2004). Rather, reading instruction has…

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

DOE PAGES

Huntemann, Marcel; Ivanova, Natalia N.; Mavromatis, Konstantinos; ...

2016-02-24

The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provide d via the IMG submission site. Users must first define their analysis projects in GOLD and then submit the associated sequence datasets consisting of scaffolds/contigs with optional coverage information and/or unassembled reads in fasta and fastq file formats. The MAP processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNAs, as well as CRISPR elements. Structural annotation ismore » followed by functional annotation including assignment of protein product names and connection to various protein family databases.« less

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huntemann, Marcel; Ivanova, Natalia N.; Mavromatis, Konstantinos

The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provide d via the IMG submission site. Users must first define their analysis projects in GOLD and then submit the associated sequence datasets consisting of scaffolds/contigs with optional coverage information and/or unassembled reads in fasta and fastq file formats. The MAP processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNAs, as well as CRISPR elements. Structural annotation ismore » followed by functional annotation including assignment of protein product names and connection to various protein family databases.« less

Implications of Student and Lecturer Qualitative Views on Reading Lists: A Case Study at Loughborough University, UK

ERIC Educational Resources Information Center

Brewerton, Gary

2014-01-01

This case study explores student and lecturer views of reading lists at Loughborough University. Taking the qualitative data from two surveys previously undertaken at the institution, it uses the grounded theory approach to identify key issues regarding the purpose, importance, visibility, content, currency, and length of reading lists, as well as…

The De Novo Transcriptome and Its Functional Annotation in the Seed Beetle Callosobruchus maculatus.

PubMed

Sayadi, Ahmed; Immonen, Elina; Bayram, Helen; Arnqvist, Göran

2016-01-01

Despite their unparalleled biodiversity, the genomic resources available for beetles (Coleoptera) remain relatively scarce. We present an integrative and high quality annotated transcriptome of the beetle Callosobruchus maculatus, an important and cosmopolitan agricultural pest as well as an emerging model species in ecology and evolutionary biology. Using Illumina sequencing technology, we sequenced 492 million read pairs generated from 51 samples of different developmental stages (larvae, pupae and adults) of C. maculatus. Reads were de novo assembled using the Trinity software, into a single combined assembly as well as into three separate assemblies based on data from the different developmental stages. The combined assembly generated 218,192 transcripts and 145,883 putative genes. Putative genes were annotated with the Blast2GO software and the Trinotate pipeline. In total, 33,216 putative genes were successfully annotated using Blastx against the Nr (non-redundant) database and 13,382 were assigned to 34,100 Gene Ontology (GO) terms. We classified 5,475 putative genes into Clusters of Orthologous Groups (COG) and 116 metabolic pathways maps were predicted based on the annotation. Our analyses suggested that the transcriptional specificity increases with ontogeny. For example, out of 33,216 annotated putative genes, 51 were only expressed in larvae, 63 only in pupae and 171 only in adults. Our study illustrates the importance of including samples from several developmental stages when the aim is to provide an integrative and high quality annotated transcriptome. Our results will represent an invaluable resource for those working with the ecology, evolution and pest control of C. maculatus, as well for comparative studies of the transcriptomics and genomics of beetles more generally.

The De Novo Transcriptome and Its Functional Annotation in the Seed Beetle Callosobruchus maculatus

PubMed Central

Sayadi, Ahmed; Immonen, Elina; Bayram, Helen

2016-01-01

Despite their unparalleled biodiversity, the genomic resources available for beetles (Coleoptera) remain relatively scarce. We present an integrative and high quality annotated transcriptome of the beetle Callosobruchus maculatus, an important and cosmopolitan agricultural pest as well as an emerging model species in ecology and evolutionary biology. Using Illumina sequencing technology, we sequenced 492 million read pairs generated from 51 samples of different developmental stages (larvae, pupae and adults) of C. maculatus. Reads were de novo assembled using the Trinity software, into a single combined assembly as well as into three separate assemblies based on data from the different developmental stages. The combined assembly generated 218,192 transcripts and 145,883 putative genes. Putative genes were annotated with the Blast2GO software and the Trinotate pipeline. In total, 33,216 putative genes were successfully annotated using Blastx against the Nr (non-redundant) database and 13,382 were assigned to 34,100 Gene Ontology (GO) terms. We classified 5,475 putative genes into Clusters of Orthologous Groups (COG) and 116 metabolic pathways maps were predicted based on the annotation. Our analyses suggested that the transcriptional specificity increases with ontogeny. For example, out of 33,216 annotated putative genes, 51 were only expressed in larvae, 63 only in pupae and 171 only in adults. Our study illustrates the importance of including samples from several developmental stages when the aim is to provide an integrative and high quality annotated transcriptome. Our results will represent an invaluable resource for those working with the ecology, evolution and pest control of C. maculatus, as well for comparative studies of the transcriptomics and genomics of beetles more generally. PMID:27442123

Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome

PubMed Central

Hücker, Sarah M.; Ardern, Zachary; Goldberg, Tatyana; Schafferhans, Andrea; Bernhofer, Michael; Vestergaard, Gisle; Nelson, Chase W.; Schloter, Michael; Rost, Burkhard; Scherer, Siegfried

2017-01-01

In the past, short protein-coding genes were often disregarded by genome annotation pipelines. Transcriptome sequencing (RNAseq) signals outside of annotated genes have usually been interpreted to indicate either ncRNA or pervasive transcription. Therefore, in addition to the transcriptome, the translatome (RIBOseq) of the enteric pathogen Escherichia coli O157:H7 strain Sakai was determined at two optimal growth conditions and a severe stress condition combining low temperature and high osmotic pressure. All intergenic open reading frames potentially encoding a protein of ≥ 30 amino acids were investigated with regard to coverage by transcription and translation signals and their translatability expressed by the ribosomal coverage value. This led to discovery of 465 unique, putative novel genes not yet annotated in this E. coli strain, which are evenly distributed over both DNA strands of the genome. For 255 of the novel genes, annotated homologs in other bacteria were found, and a machine-learning algorithm, trained on small protein-coding E. coli genes, predicted that 89% of these translated open reading frames represent bona fide genes. The remaining 210 putative novel genes without annotated homologs were compared to the 255 novel genes with homologs and to 250 short annotated genes of this E. coli strain. All three groups turned out to be similar with respect to their translatability distribution, fractions of differentially regulated genes, secondary structure composition, and the distribution of evolutionary constraint, suggesting that both novel groups represent legitimate genes. However, the machine-learning algorithm only recognized a small fraction of the 210 genes without annotated homologs. It is possible that these genes represent a novel group of genes, which have unusual features dissimilar to the genes of the machine-learning algorithm training set. PMID:28902868

An Annotated Bibliography of Literature Showing the Importance of the Process of Writing in the Language Arts Curriculum.

ERIC Educational Resources Information Center

Hook, Julie C.

This bibliography contains lengthy annotations of 29 sources which address the issues of prewriting; revision; the emotions involved in the writing process; different methods of writing instruction; and the relationships among reading, writing, and reasoning. Also included are a glossary of terms, a summary of the issues raised by the works cited,…

University of Texas MD Anderson Cancer Center (UT-MDACC): Systematic Functional Annotation of Somatic Mutations in Cancer | Office of Cancer Genomics

Cancer.gov

The CTD2 Center at the University of Texas MD Anderson Cancer Center utilized a functional annotation of mutations and fusions found in human cancers using two cell models, Ba/F3 (murine pro-B suspension cells) and MCF10A (human non-tumorigenic mammary epithelial cells). Read the abstract

University of Texas MD Anderson Cancer Center: Systematic Functional Annotation of Somatic Mutations in Cancer | Office of Cancer Genomics

Cancer.gov

The CTD2 Center at the University of Texas MD Anderson Cancer Center utilized a functional annotation of mutations and fusions found in human cancers using two cell models, Ba/F3 (murine pro-B suspension cells) and MCF10A (human non-tumorigenic mammary epithelial cells). Read the abstract

Instructional Materials Centers; Annotated Bibliography.

ERIC Educational Resources Information Center

Poli, Rosario, Comp.

An annotated bibliography lists 74 articles and reports on instructional materials centers (IMC) which appeared from 1967-70. The articles deal with such topics as the purposes of an IMC, guidelines for setting up an IMC, and the relationship of an IMC to technology. Most articles deal with use of an IMC on an elementary or secondary level, but…

Literature on the Deaf-Blind -- An Annotated Bibliography.

ERIC Educational Resources Information Center

Blea, William A., Comp.; Hobron, Robert, Comp.

The annotated bibliography of literature on the deaf-blind covers both a wide variety of sources and a lengthy period of time. Entries are listed by category: selected books; articles from American Annals of the Deaf, 1848-1970; articles from New Beacon, 1922-1970; articles from New Outlook for the Blind, 1907-1970; articles from Volta Review,…

Mass Communication in Indonesia: An Annotated Bibliography. Asian Mass Communication Bibliography Series 10.

ERIC Educational Resources Information Center

Prakoso, Mastini Hardjo, Comp.

As the first attempt to provide a comprehensive list covering the multidisciplinary fields of mass communication in Asia, this bibliography was assembled over a two-year period by compilers in ten Asian countries and represents all of the academic areas relevant to communication. Accompanied by short descriptive annotations (except where the…

Counselors' Information Service: A Quarterly Annotated Bibliography of Current Literature on Educational and Vocational Guidance. Volume 32, Number 2, May 1977.

ERIC Educational Resources Information Center

B'nai B'rith, Washington, DC. Career and Counseling Services.

This quarterly annotated bibliography lists current literature on educational and vocational guidance. It is divided into the following sections: (1) Occupational Information; (2) Educational, Vocational and Personal Guidance; (3) Guidance Administration and Procedures; (4) Student Aids; (5) Aids for the Teacher; (6) Guidance Material--Free or…

Ethnic Folklife Dissertations from the United States and Canada, 1960-1980. A Selected, Annotated Bibliography.

ERIC Educational Resources Information Center

Kerst, Catherine Hiebert

This annotated bibliography lists over 220 multi-disciplinary Ph.D. dissertations written between 1960 and 1980 on the subject of indigenous and immigrant ethnic folklife in the United States and Canada. Only dissertations providing substantial attention to traditional forms of ethnic folk culture in context were considered. The concept of…

Far Middle East: An Annotated Bibliography of Materials at Elementary School Level for Afghanistan, Iran, Pakistan.

ERIC Educational Resources Information Center

James, Eloise Lucille

This annotated bibliography presents sources of data on the culture of the plateau-region of Western Asia--an introduction to its culture, way of life, values, customs, laws, religious beliefs, technology, social institutions, language, and creative products. Section 1 contains bibliographic listings for adult instructional team members. A…

Multimedia Materials for Afro-American Studies. A Curriculum Orientation and Annotated Bibliography of Resources.

ERIC Educational Resources Information Center

Johnson, Harry Alleyn, Ed.

Four black professionals (an educational media specialist, an educator, a sociologist, and a historian) present their views on relevant education for minority students from the vantage point of their respective disciplines. An extensive annotated list of non-print media, plus a bibliography of 100 paperback books, provides a body of instructional…

Materials from the National Arts and the Handicapped Information Service: Annotated Bibliography. Second Draft.

ERIC Educational Resources Information Center

National Arts and the Handicapped Information Service, New York, NY.

This annotated bibliography describes media and materials on the subject of arts and handicapped persons, including books, recordings, films, and materials transcribed in braille and large print. Only materials produced since 1970 are listed; the many articles, magazines, and dissertations that were published in this period are not included.…

Annotated Bibliography of Publications on Watershed Management and Ecological Studies at Coweeta Hydrologic Laboratory, 1934-1994

Treesearch

Patricia L. Stickney; Lloyd W. Swift; Wayne T. Swank

1994-01-01

This annotated bibliography spans over60 years of research at Coweeta from 1934 through part of 1994, and includes earlier papers onforest influenteswritten atthe Appalachian Station beforethe establishment of Coweeta. It is a modification and update of previous compilations of research results at Coweeta and contains aseparatesection listing theses and dissertations....

Gender, Education and Development: A Partially Annotated and Selective Bibliography. Education Research Paper.

ERIC Educational Resources Information Center

Brock, Colin; Cammish, Nadine; Aedo-Richmond, Ruth; Narayanan, Aparna; Njoroge, Rose

This partially annotated and selected bibliography lists several hundred publications on the topics of gender and gender and education at the global level and in countries located in the following areas: Sub-Saharan Africa, North Africa and the Middle East, Asia, South Asia, Southeast Asia, Central and East Asia, Latin America, and Tropical Island…

An Annotated Bibliography: A Review of the Literature on Computer Assisted Writing for the College Developmental Educator.

ERIC Educational Resources Information Center

Huard, Susan D.; Malinowski, Patricia A.

Intended for educators on the postsecondary level, this annotated bibliography lists ERIC documents and relevant articles concerning computer assisted instruction. Specifically, it contains citations on the following subjects: (1) the philosophy behind computer usage, (2) general information to help decide whether to use computers in a writing…

Annotated bibliography of selected publications, through 1996, Cheyenne municipal well field areas, Cheyenne, Wyoming

USGS Publications Warehouse

Ogle, K.M.; Jordan, B.J.

1997-01-01

Annotated bibliographies for 55 hydrology and geology manuscripts pertaining to the Cheyenne municipal wells fields are listed in this report. For each manuscript, a citation is provided, a summaryparagraph is presented, key words are listed, and a location of the report is given. The report lists manuscripts, conference proceedings, and guidebooks published by the U. S. Geological Survey, State of Wyoming, Geological Society of America, Wyoming State Geological Survey,private consultants, and University of Wyoming.Information on geological formations, structural geology, aquifer characteristics, water levels, well- field production, water-demand projections, and water quality is included in the manuscripts. The Cheyenne Board of Public Utilities, the University of Wyoming, and the U. S. Geological Surveycooperatively produced this annotated bibliography to allow easy access and efficient utilization of existing data. The manuscripts were authored between 1910 and 1996, reflecting work completed over a long period of development in the Cheyenne, Wyoming area. Some manuscripts did not receive broad distribution and indexing, thus they have been difficult to locate in the past. By having the references and summaries within one report, time and effort to gather previous study results will be minimized.

Towards the VWO Annotation Service: a Success Story of the IMAGE RPI Expert Rating System

NASA Astrophysics Data System (ADS)

Reinisch, B. W.; Galkin, I. A.; Fung, S. F.; Benson, R. F.; Kozlov, A. V.; Khmyrov, G. M.; Garcia, L. N.

2010-12-01

Interpretation of Heliophysics wave data requires specialized knowledge of wave phenomena. Users of the virtual wave observatory (VWO) will greatly benefit from a data annotation service that will allow querying of data by phenomenon type, thus helping accomplish the VWO goal to make Heliophysics wave data searchable, understandable, and usable by the scientific community. Individual annotations can be sorted by phenomenon type and reduced into event lists (catalogs). However, in contrast to the event lists, annotation records allow a greater flexibility of collaborative management by more easily admitting operations of addition, revision, or deletion. They can therefore become the building blocks for an interactive Annotation Service with a suitable graphic user interface to the VWO middleware. The VWO Annotation Service vision is an interactive, collaborative sharing of domain expert knowledge with fellow scientists and students alike. An effective prototype of the VWO Annotation Service has been in operation at the University of Massachusetts Lowell since 2001. An expert rating system (ERS) was developed for annotating the IMAGE radio plasma imager (RPI) active sounding data containing 1.2 million plasmagrams. The RPI data analysts can use ERS to submit expert ratings of plasmagram features, such as presence of echo traces resulted from reflected RPI signals from distant plasma structures. Since its inception in 2001, the RPI ERS has accumulated 7351 expert plasmagram ratings in 16 phenomenon categories, together with free-text descriptions and other metadata. In addition to human expert ratings, the system holds 225,125 ratings submitted by the CORPRAL data prospecting software that employs a model of the human pre-attentive vision to select images potentially containing interesting features. The annotation records proved to be instrumental in a number of investigations where manual data exploration would have been prohibitively tedious and expensive. Especially useful are queries of the annotation database for successive plasmagrams containing echo traces. Several success stories of the RPI ERS using this capability will be discussed, particularly in terms of how they may be extended to develop the VWO Annotation Service.

Segtor: Rapid Annotation of Genomic Coordinates and Single Nucleotide Variations Using Segment Trees

PubMed Central

Renaud, Gabriel; Neves, Pedro; Folador, Edson Luiz; Ferreira, Carlos Gil; Passetti, Fabio

2011-01-01

Various research projects often involve determining the relative position of genomic coordinates, intervals, single nucleotide variations (SNVs), insertions, deletions and translocations with respect to genes and their potential impact on protein translation. Due to the tremendous increase in throughput brought by the use of next-generation sequencing, investigators are routinely faced with the need to annotate very large datasets. We present Segtor, a tool to annotate large sets of genomic coordinates, intervals, SNVs, indels and translocations. Our tool uses segment trees built using the start and end coordinates of the genomic features the user wishes to use instead of storing them in a database management system. The software also produces annotation statistics to allow users to visualize how many coordinates were found within various portions of genes. Our system currently can be made to work with any species available on the UCSC Genome Browser. Segtor is a suitable tool for groups, especially those with limited access to programmers or with interest to analyze large amounts of individual genomes, who wish to determine the relative position of very large sets of mapped reads and subsequently annotate observed mutations between the reads and the reference. Segtor (http://lbbc.inca.gov.br/segtor/) is an open-source tool that can be freely downloaded for non-profit use. We also provide a web interface for testing purposes. PMID:22069465

Adolescent Literature about the Splendid Little War: Centennial Reading.

ERIC Educational Resources Information Center

Carroll, Wayne M.; Taylor, Gwen

1998-01-01

Provides an annotated bibliography of trade books that can be used in studying the Spanish-American war. Although aimed at adolescents, the selections include books for students with limited reading skills. Covers fiction and nonfiction including writings on the war from Stephen Crane and Mark Twain. (MJP)

Additional annotation of the pig transcriptome using integrated Iso-seq and Illumina RNA-seq analysis

USDA-ARS?s Scientific Manuscript database

Alternative splicing is a well-known phenomenon that dramatically increases eukaryotic transcriptome diversity. The extent of mRNA isoform diversity among porcine tissues was assessed using Pacific Biosciences single-molecule long-read isoform sequencing (Iso-Seq) and Illumina short read sequencing ...

78 FR 8040 - National Organic Program; Proposed Amendments to the National List of Allowed and Prohibited...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-02-05

... oxidizing agent formed by a reaction of hydrogen peroxide with acetic acid in water. The reaction used to... peracetic acid. Peracetic acid is produced from the in situ reaction of acetic acid, an inert ingredient... annotation for both listings of peracetic acid.\\3\\ A second motion to list peracetic acid without any...

Annotated checklist of Albanian butterflies (Lepidoptera, Papilionoidea and Hesperioidea)

PubMed Central

Verovnik, Rudi; Popović, Miloš

2013-01-01

Abstract The Republic of Albania has a rich diversity of flora and fauna. However, due to its political isolation, it has never been studied in great depth, and consequently, the existing list of butterfly species is outdated and in need of radical amendment. In addition to our personal data, we have studied the available literature, and can report a total of 196 butterfly species recorded from the country. For some of the species in the list we have given explanations for their inclusion and made other annotations. Doubtful records have been removed from the list, and changes in taxonomy have been updated and discussed separately. The purpose of our paper is to remove confusion and conflict regarding published records. However, the revised checklist should not be considered complete: it represents a starting point for further research. PMID:24003315

Children's early reading vocabulary: description and word frequency lists.

PubMed

Stuart, Morag; Dixon, Maureen; Masterson, Jackie; Gray, Bob

2003-12-01

When constructing stimuli for experimental investigations of cognitive processes in early reading development, researchers have to rely on adult or American children's word frequency counts, as no such counts exist for English children. The present paper introduces a database of children's early reading vocabulary, for use by researchers and teachers. Texts from 685 books from reading schemes and story books read by 5-7 year-old children were used in the construction of the database. All words from the 685 books were typed or scanned into an Oracle database. The resulting up-to-date word frequency list of early print exposure in the UK is available in two forms from a website address given in this paper. This allows access to one list of the words ordered alphabetically and one list of the words ordered by frequency. We also briefly address some fundamental issues underlying early reading vocabulary (e.g., that it is heavily skewed towards low frequencies). Other characteristics of the vocabulary are then discussed. We hope the word frequency lists will be of use to researchers seeking to control word frequency, and to teachers interested in the vocabulary to which young children are exposed in their reading material.

Catalogs of Audiovisual Materials: A Guide to Government Sources.

ERIC Educational Resources Information Center

Dale, Doris Cruger

This annotated bibliography lists 53 federally published catalogs and bibliographies which identify films and other audiovisual materials produced or sponsored by government agencies; some also include commercially produced audiovisual and/or print materials. Publications are listed alphabetically by government agency or department, and…

Shakespeare: A Student's Guide to Basic Reference Sources.

ERIC Educational Resources Information Center

Claener, Anne, Comp.

Basic and standard reference materials dealing with William Shakespeare are listed in this bibliography. Annotated entries are grouped under the following headings: concordances, dictionaries, encyclopedias and handbooks, and bibliographies. The section on bibliographies is further divided into lists of editions of Shakespeare's work, general…

Specialized microbial databases for inductive exploration of microbial genome sequences

PubMed Central

Fang, Gang; Ho, Christine; Qiu, Yaowu; Cubas, Virginie; Yu, Zhou; Cabau, Cédric; Cheung, Frankie; Moszer, Ivan; Danchin, Antoine

2005-01-01

Background The enormous amount of genome sequence data asks for user-oriented databases to manage sequences and annotations. Queries must include search tools permitting function identification through exploration of related objects. Methods The GenoList package for collecting and mining microbial genome databases has been rewritten using MySQL as the database management system. Functions that were not available in MySQL, such as nested subquery, have been implemented. Results Inductive reasoning in the study of genomes starts from "islands of knowledge", centered around genes with some known background. With this concept of "neighborhood" in mind, a modified version of the GenoList structure has been used for organizing sequence data from prokaryotic genomes of particular interest in China. GenoChore , a set of 17 specialized end-user-oriented microbial databases (including one instance of Microsporidia, Encephalitozoon cuniculi, a member of Eukarya) has been made publicly available. These databases allow the user to browse genome sequence and annotation data using standard queries. In addition they provide a weekly update of searches against the world-wide protein sequences data libraries, allowing one to monitor annotation updates on genes of interest. Finally, they allow users to search for patterns in DNA or protein sequences, taking into account a clustering of genes into formal operons, as well as providing extra facilities to query sequences using predefined sequence patterns. Conclusion This growing set of specialized microbial databases organize data created by the first Chinese bacterial genome programs (ThermaList, Thermoanaerobacter tencongensis, LeptoList, with two different genomes of Leptospira interrogans and SepiList, Staphylococcus epidermidis) associated to related organisms for comparison. PMID:15698474

Neural correlates of processing sentences and compound words in Chinese

PubMed Central

Hung, Yi-Hui; Tzeng, Ovid; Wu, Denise H.

2017-01-01

Sentence reading involves multiple linguistic operations including processing of lexical and compositional semantics, and determining structural and grammatical relationships among words. Previous studies on Indo-European languages have associated left anterior temporal lobe (aTL) and left interior frontal gyrus (IFG) with reading sentences compared to reading unstructured word lists. To examine whether these brain regions are also involved in reading a typologically distinct language with limited morphosyntax and lack of agreement between sentential arguments, an FMRI study was conducted to compare passive reading of Chinese sentences, unstructured word lists and disconnected character lists that are created by only changing the order of an identical set of characters. Similar to previous findings from other languages, stronger activation was found in mainly left-lateralized anterior temporal regions (including aTL) for reading sentences compared to unstructured word and character lists. On the other hand, stronger activation was identified in left posterior temporal sulcus for reading unstructured words compared to unstructured characters. Furthermore, reading unstructured word lists compared to sentences evoked stronger activation in left IFG and left inferior parietal lobule. Consistent with the literature on Indo-European languages, the present results suggest that left anterior temporal regions subserve sentence-level integration, while left IFG supports restoration of sentence structure. In addition, left posterior temporal sulcus is associated with morphological compounding. Taken together, reading Chinese sentences engages a common network as reading other languages, with particular reliance on integration of semantic constituents. PMID:29194453

The use of surface geophysical techniques to detect fractures in bedrock; an annotated bibliography

USGS Publications Warehouse

Lewis, Mark R.; Haeni, F.P.

1987-01-01

This annotated bibliography compiles references about the theory and application of surface geophysical techniques to locate fractures or fracture zones within bedrock units. Forty-three publications are referenced, including journal articles, theses, conference proceedings, abstracts, translations, and reports prepared by private contractors and U.S. Government agencies. Thirty-one of the publications are annotated. The remainder are untranslated foreign language articles, which are listed only as bibliographic references. Most annotations summarize the location, geologic setting, surface geophysical technique used, and results of a study. A few highly relevant theoretical studies are annotated also. Publications that discuss only the use of borehole geophysical techniques to locate fractures are excluded from this bibliography. Also excluded are highly theoretical works that may have little or no known practical application.

A Selection of Films for Family Planning Programmes.

ERIC Educational Resources Information Center

International Planned Parenthood Federation, London (England).

This catalog gives an annotated listing of selected films available for use in family planning programs. Films are listed alphabetically, geographically by particular country, and by subject. In most cases information is given concerning length, producer, distributor, cost, and rental conditions from the International Planned Parenthood…

Small Business Bibliography.

ERIC Educational Resources Information Center

Anderson, Wendell, Ed.

Intended as a resource for both experienced businesspeople and those new to business, this annotated bibliography provides a list of books, pamphlets, periodicals, and videotapes of value in solving specific business problems. The bibliography begins with a list of resources recommended for the library of every small business and a survey of…

Audiovisual Materials.

ERIC Educational Resources Information Center

American Council on Education, Washington, DC. HEATH/Closer Look Resource Center.

The fact sheet presents a suggested evaluation framework for use in previewing audiovisual materials, a list of selected resources, and an annotated list of films which were shown at the AHSSPPE '83 Media Fair as part of the national conference of the Association on Handicapped Student Service Programs in Postsecondary Education. Evaluation…

Coping Skills.

ERIC Educational Resources Information Center

Library of Congress, Washington, DC. National Library Service for the Blind and Physically Handicapped.

This annotated bibliography lists approximately 150 braille books and 300 audiocassettes of books which address coping skills for people in a variety of situations. All items listed are available in the network library collections provided by the National Library Service for the Blind and Physically Handicapped of the Library of Congress.…

Information Design: A Bibliography.

ERIC Educational Resources Information Center

Albers, Michael J.; Lisberg, Beth Conney

2000-01-01

Presents a 17-item annotated list of essential books on information design chosen by members of the InfoDesign e-mail list. Includes a 113-item unannotated bibliography of additional works, on topics of creativity and critical thinking; visual thinking; graphic design; infographics; information design; instructional design; interface design;…

Archaeology: A Guide to Reference Sources.

ERIC Educational Resources Information Center

Morrison, Doreen, Comp.

This bibliographic guide lists reference sources available at McGill University for research in prehistory and non-classical archaeology. No exclusively biographical sources have been included, but many of the encyclopedias and handbooks contain biographical information and are annotated accordingly. Titles are listed in the following categories:…

Bibliography of Multi-Ethnic and Sex-Fair Resource Materials.

ERIC Educational Resources Information Center

Massachusetts State Dept. of Education, Boston. Bureau of Equal Educational Opportunities.

This annotated bibliography lists both nondiscriminatory instructional materials (largely audio-visual) for classroom use and works for teachers' use that promote multi-ethnic and sex fair education. The materials listed include films, filmstrips, slide presentations and video tapes, bibliographies of curriculum materials, books, handbooks and…

Sickle Cell: A Selected Resource Bibliography.

ERIC Educational Resources Information Center

National Center for Education in Maternal and Child Health, Washington, DC.

This annotated, selective bibliography lists the following types of educational and informational material on both sickle cell disease and trait: (1) professional education materials; (2) fact sheets, pamphlets, and brochures; and (3) audiovisual material. A selected list of references is provided for the following topic areas: (1) genetic…

UK Preparatory School Librarians' and Teachers' Design and Use of Reading Lists: A Qualitative Study of Approaches, Perceptions, and Content

ERIC Educational Resources Information Center

Scott, Rebecca; Inskip, Charles

2017-01-01

This paper reports the findings of a small-scale qualitative study that explored the perceptions of and approaches used by UK school librarians and teachers in the design and use of reading lists. The research question was: "What is the best way to construct reading lists to maximize their benefit in the school library or classroom?" The…

An Annotated Bibliography of Selected Projects, Theses, and Dissertations on the American Indian by Arizona State University Students from 1943-1974.

ERIC Educational Resources Information Center

Mech, Joyce, Comp.

Fifty-five published projects, theses, and dissertations dealing with the Native American and written by Arizona State University students are listed in this annotated bibliography. Arranged alphabetically according to authors and topics, the publications cover the period from 1943 to 1974. Topics include: (1) attitudes/achievement, (2)…

Sourcebook for Sex Equality: Small Presses. An Annotated Listing of Small Presses and Alternative Sources for Books and Media. Bibliographic Series, 1.

ERIC Educational Resources Information Center

Hulme, Marylin A., Comp.

This briefly annotated guide to non-sexist and non-racist educational materials suppliers includes small presses, non-profit educational firms, women's sections of professional and trade organizations, task forces in State educational departments, and feminist publishers, bookstores and distributors. Aimed at assisting librarians and teachers in…

Annotated Bibliography. Conference Materials: Strategy Conference on Education and the Economy (Washington, D.C., September 22-24, 1981).

ERIC Educational Resources Information Center

Center for Law and Education, Boston, MA.

The 22 items included in a packet distributed to participants at a 1981 conference on education and the economy are listed in this annotated bibliography, with sources for the items identified. The materials include articles, chapters from books, and monographs, as well as a resource guide and bibliography concerning rural economic and community…

The Use of Standard Tasks to Measure Achievement in Reading, Spelling, and Written Expression: A Normative and Developmental Study.

ERIC Educational Resources Information Center

Deno, Stanley; And Others

Simple measures of reading, spelling, and written expression were administered to 566 elementary students from the states of Minnesota, Pennsylvania, and Washington. Each child was individually administered three reading word lists, three reading passages, two dictated spelling lists, and two story starters. Approximately 25 minutes was needed for…

Mass Communication in Hong Kong and Macao: An Annotated Bibliography. Asian Mass Communication Bibliography Series 3.

ERIC Educational Resources Information Center

Yu, Timothy L.M., Comp.

This bibliography lists and describes published and unpublished material relating to mass communications in Hong Kong and Macao, from 1945 to 1973. Most of the items listed are written in Chinese; a limited number are in English. Part one, which deals with Hong Kong, lists 115 items divided into 18 sections: bibliography and reference material;…

A Reading List.

ERIC Educational Resources Information Center

Barrett, Jon, Comp.

This reading list contains 140 books, reports, resource guides, conference proceedings, directories, and journals pertaining to adventure and outdoor education, adventure therapy, group work, developmental work, and at-risk youth. Most entries were published from 1984-94. Entries are listed in the following categories: adventure (general); outdoor…

Marginalised Behaviour: Digital Annotations, Spatial Encoding and the Implications for Reading Comprehension

ERIC Educational Resources Information Center

Johnson, Martin; Nadas, Rita

2009-01-01

Within large scale educational assessment agencies in the UK, there has been a shift towards assessors marking digitally scanned copies rather than the original paper scripts that were traditionally used. This project uses extended essay examination scripts to consider whether the mode in which an essay is read potentially influences the…

Your Reading: A Booklist for Junior High and Middle School Students. Eighth Edition.

ERIC Educational Resources Information Center

Nilsen, Alleen Pace, Ed.

This annotated bibliography for junior high and middle school students describes nearly 1,200 recent books to read for pleasure, for school assignments, or to satisfy curiosity. Books included are divided into six major sections (the first three contain mostly fiction and biographies): Connections, Understandings, Imaginings, Contemporary Poetry…

The d-Prime directive: Assessing costs and benefits in recognition by dissociating mixed-list false alarm rates.

PubMed

Forrin, Noah D; Groot, Brianna; MacLeod, Colin M

2016-07-01

It can be difficult to judge the effectiveness of encoding techniques in a within-subject design. Consider the production effect-the finding that words read aloud are better remembered than words read silently. In the absence of a baseline, a within-subject production effect in a mixed study list could reflect a benefit of reading aloud, a cost of reading silently, or both. To help interpret within-subject data, memory researchers have compared within-subject and between-subjects designs, with the between-subjects (i.e., pure list) conditions serving as baselines against which the within-subject (i.e., mixed-list) conditions are compared. In the present article, the authors highlight a shortcoming of using this comparison to assess costs and benefits in recognition. Unlike between-subjects experiments where separate false alarm rates are obtained for each condition, the typical within-subject experiment yields a collapsed false alarm rate, which, the authors argue, can potentially bias calculations of memory discrimination (d'). Across 3 experiments that used production as the encoding manipulation, they used a typical mixed-list versus pure-list design (Experiment 1) and then made modifications to this design (Experiments 2 and 3) that yielded separate mixed-list false alarm rates. The results of the latter 2 experiments demonstrated that words that are read aloud in a mixed list have an overall memorial benefit over words that are read aloud in a pure list-both in terms of increased hits and reduced false alarms. The authors frame these results in terms of the distinctiveness heuristic. (PsycINFO Database Record (c) 2016 APA, all rights reserved).

Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA.

PubMed

Tripathi, Kumar Parijat; Evangelista, Daniela; Zuccaro, Antonio; Guarracino, Mario Rosario

2015-01-01

RNA-seq is a new tool to measure RNA transcript counts, using high-throughput sequencing at an extraordinary accuracy. It provides quantitative means to explore the transcriptome of an organism of interest. However, interpreting this extremely large data into biological knowledge is a problem, and biologist-friendly tools are lacking. In our lab, we developed Transcriptator, a web application based on a computational Python pipeline with a user-friendly Java interface. This pipeline uses the web services available for BLAST (Basis Local Search Alignment Tool), QuickGO and DAVID (Database for Annotation, Visualization and Integrated Discovery) tools. It offers a report on statistical analysis of functional and Gene Ontology (GO) annotation's enrichment. It helps users to identify enriched biological themes, particularly GO terms, pathways, domains, gene/proteins features and protein-protein interactions related informations. It clusters the transcripts based on functional annotations and generates a tabular report for functional and gene ontology annotations for each submitted transcript to the web server. The implementation of QuickGo web-services in our pipeline enable the users to carry out GO-Slim analysis, whereas the integration of PORTRAIT (Prediction of transcriptomic non coding RNA (ncRNA) by ab initio methods) helps to identify the non coding RNAs and their regulatory role in transcriptome. In summary, Transcriptator is a useful software for both NGS and array data. It helps the users to characterize the de-novo assembled reads, obtained from NGS experiments for non-referenced organisms, while it also performs the functional enrichment analysis of differentially expressed transcripts/genes for both RNA-seq and micro-array experiments. It generates easy to read tables and interactive charts for better understanding of the data. The pipeline is modular in nature, and provides an opportunity to add new plugins in the future. Web application is freely available at: http://www-labgtp.na.icar.cnr.it/Transcriptator.

Wildlife Legislation before and after the Endangered Species Act of 1973.

ERIC Educational Resources Information Center

Gray, Dorothy A.

1988-01-01

Reviews recent federal legislation on endangered species, the early history of wildlife legislation, and administration of the Endangered Species Act of 1973. Annotated lists of congressional hearings and reports, laws, and comments on the laws are attached, as well as chronological listings of acts and court decisions. (MES)

BIBLIOGRAPHIES, HIGH SCHOOL MATHEMATICS.

ERIC Educational Resources Information Center

WOODS, PAUL E.

THIS ANNOTATED BIBLIOGRAPHY IS A COMPILATION OF A NUMBER OF HIGHLY REGARDED BOOK LISTS CONSISTING OF LIBRARY BOOKS AND TEXTBOOKS FOR GRADES 7-12. THE BOOKS IN THIS LIST ARE CURRENTLY IN PRINT AND THE CONTENT IS REPRESENTATIVE OF THE FOLLOWING AREAS OF MATHEMATICS--MATHEMATICAL RECREATION, COMPUTERS, ARITHMETIC, ALGEBRA, EUCLIDEAN GEOMETRY,…

Project Basic Instructional Guide. Instructional Resources. Volume IV. World of Work.

ERIC Educational Resources Information Center

Maryland State Dept. of Education, Baltimore.

Designed to provide a listing of suggested resources to support the Project Basic instructional guide on the world of work, this bibliography consists of annotated listings of student-use materials (library books, films, filmstrips, kits, records, games, audio and videotapes, filmloops, transparencies, periodicals, and pamphlets) arranged…

Holidays. Instructional Media Advisory List.

ERIC Educational Resources Information Center

North Carolina State Dept. of Public Instruction, Raleigh. Div. of Media Evaluation Service.

This annotated bibliography is directed at teachers of students in grades preK-6 and covers books about holidays. The holidays for which materials are listed are: Christmas, Easter, Halloween, Hanukkah, Passover, Purim, Rosh Hashanah, Sukkot, Thanksgiving, and Valentine's Day. A directory of publishers from whom these items are available is…

Selected Bibliography and Abstracts of Educational Materials in Pakistan, Vol. 15, No. 4, October-December, 1981.

ERIC Educational Resources Information Center

Saad, Geti, Comp.

Over 85 government publications, newspaper articles, monographs, and syllabi published between October and December 1981 are cited in this annotated listing. Entries are listed alphabetically by author under the following topics: educational administration, organization, and finance; curriculum; educational planning; examinations; higher…

Sourcebook on Parenting and Child Care.

ERIC Educational Resources Information Center

Carpenter, Kathryn Hammell

Intended as a guide to parenting materials for parents and professionals who work with parents, this sourcebook and annotated bibliography of 940 entries is divided into five parts. Topical chapters in each part list and describe books and journals categorized as popular titles, professional titles, and directories. Chapters in part 1 list and…

Tests and Testing for Bilingual Children: A Bibliography of Literature.

ERIC Educational Resources Information Center

Kirsch, Judith, Comp.

This annotated listing cites tests, guides, dissertations, journal articles, research reports, reference materials, and conference papers and proceedings regarding tests and testing for bilingual children. Items cited were published between 1964-81. The listing is one of a series of bibliographies from a computerized database, Bilingual Education…

Insects associated with ponderosa pine in Colorado

Treesearch

Robert E. Stevens; J. Wayne Brewer; David A. Leatherman

1980-01-01

Ponderosa pine serves as a host for a wide variety of insects. Many of these, including all the particularly destructive ones in Colorado, are discussed in this report. Included are a key to the major insect groups, an annotated list of the major groups, a glossary, and a list of references.

Foods from an Iowa Farm. A Resource Guide.

ERIC Educational Resources Information Center

Iowa State Dept. of Agriculture and Land Stewardship, Des Moines.

Prepared for elementary and secondary teachers, this guide provides an annotated list of 72 instructional materials for teaching about farming and the products of Iowa farms. Entries, listed under the organization that provides the materials, state type of instructional material, major topics addressed, grades for which materials are appropriate,…

Public Administration: A Bibliography of Selected Reference Sources.

ERIC Educational Resources Information Center

Brustman, Mary Jane

This guide presents an annotated list of selected reference sources in public administration. All of the sources listed are found at the Graduate Library for Public Affairs and Policy (GLPP) located at the State University of New York, Albany. Detailed, exhaustive guides in literature, research, indexes, abstracts, statistical sources, government…

A Description and Source Listing of Curriculum Materials in Agricultural Education. 1972-73.

ERIC Educational Resources Information Center

American Vocational Association, Washington, DC. Agricultural Education Div.

Listed are 246 curriculum material items in ten categories: field crops, horticulture, forestry, animal science, soils, diseases and pests, agricultural engineering, agricultural economics, agricultural occupations, and professional. Most materials are annotated and all are classified according to the AGPEX filing system. Bibliographic and…

Learning Research and Development Center Publications List Update, 1995.

ERIC Educational Resources Information Center

Pittsburgh Univ., PA. Learning Research and Development Center.

This document presents an annotated listing of articles, conference papers, book chapters, papers, and books published in 1995 as a result of investigations carried on at the University of Pittsburgh's Learning Research and Development Center (LRDC). The publications are organized alphabetically by author and chronologically within each author's…

Resources for Family and Consumer Science Teachers, 1995.

ERIC Educational Resources Information Center

Scholl, Jan

This annotated bibliography of resources for family and consumer science teachers lists 59 items developed for "Teacher Pages" (an electronic information service) by Penn State Cooperative Extension Service between December 1, 1993 and December 1, 1994. Each listing includes a short description, source, address, price if appropriate, and ordering…

Vocational Instructional Materials for Marketing and Distributive Education Available from Federal Agencies.

ERIC Educational Resources Information Center

Hill, Carol L., Comp.

This listing of federally produced curriculum and instructional materials for marketing and distributive education is one of eight annotated bibliographies that provide information for vocational educators at the secondary, postsecondary, and adult levels. Introductory information given includes a description of how to use the listing and sources…

Small Business Information Bibliography. Revised.

ERIC Educational Resources Information Center

Lamb, Melissa, Ed.; And Others

This annotated bibliography lists a wide variety of print materials that may be helpful to small business owners in acquiring the knowledge necessary to manage their businesses. The bibliography is arranged in chapters by main functional topics. In each chapter, subcategories of interest are then listed, and entries are arranged alphabetically…

Educators Resource Guide to WP Material for the Classroom.

ERIC Educational Resources Information Center

Potts, Peggy J.

This guide lists materials to be used in the classroom instruction of word processing technology. A listing of international, national, and regional word processing associations is followed by an annotated enumeration of resources under nine headings: (1) booklets and brochures, (2) books, (3) films, (4) handbooks, (5) machine transcription…

Bibliography of Training Aids. 2nd Edition.

ERIC Educational Resources Information Center

Air Conditioning and Refrigeration Inst., Arlington, VA.

A revision of ED 018 650, this annotated bibliography prepared by the Air-Conditioning and Refrigeration Institute lists training materials, films, and ancillary visual aids available from 34 member companies for use in air-conditioning and refrigeration training programs. Over 160 visual training aids are listed, arranged under the following…

An updated comprehensive annotated list of the butterflies (Lepidoptera: Rhopalocera) occurring at Chase Lake National Wildlife Refuge Complex Stutsman County, North Dakota 1995-1996

USGS Publications Warehouse

Royer, Ron

1996-01-01

A project to produce a comprehensive, site-specific butterfly list that could serve as a basis for future monitoring of butterfly populations and as an aid in making management decisions for the area.

An updated comprehensive annotated list of the butterflies (Lepidoptera: Rhopalocera) occuring at Sullys Hill National Game Preserve Benson County, North Dakota 1995-1996

USGS Publications Warehouse

Royer, Ron

1996-01-01

A project to produce a comprehensive, site-specific butterfly list that could serve as a basis for future monitoring of butterfly populations and as an aid in making management decisions for the area.

New Mexico Boating Education Resource Manual.

ERIC Educational Resources Information Center

Marshall, Margaret, Comp.; Herrera, Orlando, Comp.

Resources for individuals and organizations interested in teaching and promoting boating safety are listed in this directory of films, speakers, publications, and boating courses. Although some information is specific to New Mexico, most is of general interest. An annotated list of 40 films provides sources for obtaining the films, all free of…

Teacher's Guide to the Future.

ERIC Educational Resources Information Center

Murphy, Elaine M.; Cancellier, Patricia

1982-01-01

A brief introduction to futures education, an annotated listing of resources, and three ready-to-use student activities are provided. The introduction discusses the benefits of futures education; for example, it encourages students to make responsible decisions about the future. Next, it lists a variety of techniques developed by futurists to…

New Feminist Scholarship: A Guide to Bibliographies.

ERIC Educational Resources Information Center

Williamson, Jane

This partially annotated bibliography lists 391 bibliographies, resource lists, and literature reviews on women. The entries, published in the late 1960s and throughout the 1970s, are classified alphabetically by author into 30 categories including a general category, anthropology and sociology, art and music, child care, criminal justice,…

Media Catalog: South Asian Studies. 1979-1980.

ERIC Educational Resources Information Center

Kansas State Univ., Manhattan. South Asia Media Center.

The bibliography lists and annotates 111 multimedia teaching aids for instruction in South Asian Studies at the elementary, secondary, and collegiate levels. The collection listed is housed in the South Asia Media Center at Kansas State University in Manhattan, Kansas. Topics covered include the culture, economics, daily life, politics, religion,…

Selected Bibliography of Egyptian Educational Materials. Vol. 5, No. 4, 1979.

ERIC Educational Resources Information Center

Al-Ahram Center for Scientific Translations, Cairo (Egypt).

This annotated listing cites books, monographs, government publications, and journal articles dealing with education in Egypt. Items cited were published in 1979. The listing is organized by subject area. Subjects include adult education in mosques; anxiety among sportsmen; arabic languages; art education; Azhari institutes; basic education; child…

Selected Bibliography of Egyptian Educational Materials, Vol. 6, No. 1, 1980.

ERIC Educational Resources Information Center

Al-Ahram Center for Scientific Translations, Cairo (Egypt).

This annotated listing cites books, monographs, government publications, and journal articles dealing with education in Egypt. Items cited were published in 1980. The listing is organized by subject areas. The subjects include adult education, agricultural education, art education, Azhari institutes, basic education, boyscouting, children's…

Mass Communication in Malaysia: An Annotated Bibliography.

ERIC Educational Resources Information Center

Tee, Lim Huck, Comp; Sarachandran, V.V., Comp.

This bibliography lists published and unpublished material relating to mass communications in Malaysia, 1945 to 1973. Most of the items listed are written in English and Malay, and a limited number are in Chinese. The bibliography is divided into 21 sections: bibliography and reference material; communication theory, research methods;…

Countries: General, Electricity, Geography, Health, Literature: Children's, Plants.

ERIC Educational Resources Information Center

Web Feet, 2002

2002-01-01

Presents an annotated list of Web site educational resources kindergarten through eighth grade. The Web sites this month cover the following subjects: countries (general); electricity; geography; health; children's literature; and plants. Includes a list of "Calendar Connections" to Web site sources of information on Earth Day in April…

Toys and Handicapped Children: An Annotated Bibliography.

ERIC Educational Resources Information Center

Jeffery, Gary H.

The bibliography lists approximately 100 citations of documents discussing the ways in which toys are used with handicapped children. It is explained that the materials listed cover uses ranging from simple play and recreation to more remediation and therapy oriented approaches. Citations are organized alphabetically by author according to their…

Reference. Advisory List of Instructional Media.

ERIC Educational Resources Information Center

North Carolina State Dept. of Public Education, Raleigh.

The reference books featured in this annotated bibliography were selected from those titles that publishers submitted to the North Carolina Department of Public Instruction for review. As such, it is not a comprehensive list of all reference titles in print. This guide organizes the 33 titles into major subject categories: (1) Arts…

Forest genetics and related research at the Lake States Forest Experiment Station--an annotated bibliography, 1924-1965.

Treesearch

Paul O. Rudolf

1966-01-01

Lists 172 papers published by staff members of the Lake States Forest Experiment Station from 1924 to 1965. The papers are listed alphabetically by authors. Also contains an index by subject matter and an index by species scientific names.

Publishing: Alternatives and Economics.

ERIC Educational Resources Information Center

Penchansky, Mimi; And Others

The Library Association of the City University of New York presents an annotated bibliography on the subject of small and alternative publishing. In the first section directories, indexes, catalogs, and reviews are briefly described. Book distributors for small publishers are listed next. The major portion of the bibliography is a listing of books…

English through Latin and Greek: A Textbook List for Vocabulary Courses (Part 2).

ERIC Educational Resources Information Center

Sebesta, Judith Lynn

1983-01-01

Nine general books on developing English vocabulary from Latin and Greek and three related books on medical terminology are listed and annotated. The texts are oriented to various groups from fifth grade through professional education levels and are for classroom and self-directed learning. (MSE)

Free-Loan Media for French: A Teacher's Guide.

ERIC Educational Resources Information Center

Veitz, M. Frances, Ed.

Designed to assist French instructors in introducing France to their students, this guidebook provides an annotated list of over 300 audio-visual materials and realia that are available on a free-loan basis. The guide lists films, videotapes, filmstrips, slide collections, pamphlets, factsheets, posters, records, tapes, and booklets available in…

FOREIGN LANGUAGE FILMS IN LOUISIANA DEPOSITORIES.

ERIC Educational Resources Information Center

BABINEAUX, AUDREY

THIS MANUAL IS AN ANNOTATED LIST OF 16-MILLIMETER EDUCATIONAL FOREIGN LANGUAGE FILMS (BOTH LINGUISTIC AND CULTURAL) WHICH WERE PURCHASED WITH STATE AND FEDERAL FUNDS AND PLACED IN LOUISIANA'S NINE FILM LIBRARIES. FILMS ARE ARRANGED ALPHABETICALLY BY LANGUAGES. FILMS IN THE TARGET LANGUAGE ARE LISTED SEPARATELY FROM FILMS WITH ENGLISH NARRATION. A…

An Annotated Listing of Free and Inexpensive Materials for Teaching about Illinois.

ERIC Educational Resources Information Center

Illinois State Office of Education, Springfield. Div. of Program Planning and Development.

Over 70 historic sites, outreach programs, teaching aids, publications, and media presentations appropriate for elementary and secondary school instruction in Illinois history, government, and natural resources are listed. Items are categorized by the Illinois state department or museum which makes the information available: Illinois Department of…

Desert tortoise annotated bibliography, 1991-2015

USGS Publications Warehouse

Berry, Kristin H.; Lyren, Lisa M.; Mack, Jeremy S.; Brand, L. Arriana; Wood, Dustin A.

2016-03-01

Agassiz’s Desert Tortoise (hereinafter called desert tortoise) is a state- and federally-listed threatened species (U.S. Fish and Wildlife Service, 1990; California Department of Fish and Game, 2015). The first population federally listed as threatened occurred on the Beaver Dam Slope, Utah (U.S. Fish and Wildlife Service, 1980). In 1990, the entire geographic range north and west of the Colorado River was federally listed as threatened (U.S. Fish and Wildlife Service, 1990), with the exception being a small population in northwestern Arizona. The purpose of this annotated bibliography is to support recovery efforts for the species, because populations have continued to decline in spite of designation of critical habitat and publication of a recovery plan (U.S. Fish and Wildlife Service, 1994). For example, between 2005 and 2014, populations in critical habitats declined about 50% (U.S. Fish and Wildlife Service, 2015).

Transcriptomic Analysis of the Endangered Neritid Species Clithon retropictus: De Novo Assembly, Functional Annotation, and Marker Discovery

PubMed Central

Park, So Young; Patnaik, Bharat Bhusan; Kang, Se Won; Hwang, Hee-Ju; Chung, Jong Min; Song, Dae Kwon; Sang, Min Kyu; Patnaik, Hongray Howrelia; Lee, Jae Bong; Noh, Mi Young; Kim, Changmu; Kim, Soonok; Park, Hong Seog; Lee, Jun Sang; Han, Yeon Soo; Lee, Yong Seok

2016-01-01

An aquatic gastropod belonging to the family Neritidae, Clithon retropictus is listed as an endangered class II species in South Korea. The lack of information on its genomic background limits the ability to obtain functional data resources and inhibits informed conservation planning for this species. In the present study, the transcriptomic sequencing and de novo assembly of C. retropictus generated a total of 241,696,750 high-quality reads. These assembled to 282,838 unigenes with mean and N50 lengths of 736.9 and 1201 base pairs, respectively. Of these, 125,616 unigenes were subjected to annotation analysis with known proteins in Protostome DB, COG, GO, and KEGG protein databases (BLASTX; E ≤ 0.00001) and with known nucleotides in the Unigene database (BLASTN; E ≤ 0.00001). The GO analysis indicated that cellular process, cell, and catalytic activity are the predominant GO terms in the biological process, cellular component, and molecular function categories, respectively. In addition, 2093 unigenes were distributed in 107 different KEGG pathways. Furthermore, 49,280 simple sequence repeats were identified in the unigenes (>1 kilobase sequences). This is the first report on the identification of transcriptomic and microsatellite resources for C. retropictus, which opens up the possibility of exploring traits related to the adaptation and acclimatization of this species. PMID:27455329

Evaluation of web-based annotation of ophthalmic images for multicentric clinical trials.

PubMed

Chalam, K V; Jain, P; Shah, V A; Shah, Gaurav Y

2006-06-01

An Internet browser-based annotation system can be used to identify and describe features in digitalized retinal images, in multicentric clinical trials, in real time. In this web-based annotation system, the user employs a mouse to draw and create annotations on a transparent layer, that encapsulates the observations and interpretations of a specific image. Multiple annotation layers may be overlaid on a single image. These layers may correspond to annotations by different users on the same image or annotations of a temporal sequence of images of a disease process, over a period of time. In addition, geometrical properties of annotated figures may be computed and measured. The annotations are stored in a central repository database on a server, which can be retrieved by multiple users in real time. This system facilitates objective evaluation of digital images and comparison of double-blind readings of digital photographs, with an identifiable audit trail. Annotation of ophthalmic images allowed clinically feasible and useful interpretation to track properties of an area of fundus pathology. This provided an objective method to monitor properties of pathologies over time, an essential component of multicentric clinical trials. The annotation system also allowed users to view stereoscopic images that are stereo pairs. This web-based annotation system is useful and valuable in monitoring patient care, in multicentric clinical trials, telemedicine, teaching and routine clinical settings.

Annotated checklist and database for vascular plants of the Jemez Mountains

DOE Office of Scientific and Technical Information (OSTI.GOV)

Foxx, T. S.; Pierce, L.; Tierney, G. D.

Studies done in the last 40 years have provided information to construct a checklist of the Jemez Mountains. The present database and checklist builds on the basic list compiled by Teralene Foxx and Gail Tierney in the early 1980s. The checklist is annotated with taxonomic information, geographic and biological information, economic uses, wildlife cover, revegetation potential, and ethnographic uses. There are nearly 1000 species that have been noted for the Jemez Mountains. This list is cross-referenced with the US Department of Agriculture Natural Resource Conservation Service PLANTS database species names and acronyms. All information will soon be available on amore » Web Page.« less

MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation.

PubMed

Lugli, Gabriele Andrea; Milani, Christian; Mancabelli, Leonardo; van Sinderen, Douwe; Ventura, Marco

2016-04-01

Genome annotation is one of the key actions that must be undertaken in order to decipher the genetic blueprint of organisms. Thus, a correct and reliable annotation is essential in rendering genomic data valuable. Here, we describe a bioinformatics pipeline based on freely available software programs coordinated by a multithreaded script named MEGAnnotator (Multithreaded Enhanced prokaryotic Genome Annotator). This pipeline allows the generation of multiple annotated formats fulfilling the NCBI guidelines for assembled microbial genome submission, based on DNA shotgun sequencing reads, and minimizes manual intervention, while also reducing waiting times between software program executions and improving final quality of both assembly and annotation outputs. MEGAnnotator provides an efficient way to pre-arrange the assembly and annotation work required to process NGS genome sequence data. The script improves the final quality of microbial genome annotation by reducing ambiguous annotations. Moreover, the MEGAnnotator platform allows the user to perform a partial annotation of pre-assembled genomes and includes an option to accomplish metagenomic data set assemblies. MEGAnnotator platform will be useful for microbiologists interested in genome analyses of bacteria as well as those investigating the complexity of microbial communities that do not possess the necessary skills to prepare their own bioinformatics pipeline. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Rapid storage and retrieval of genomic intervals from a relational database system using nested containment lists

PubMed Central

Wiley, Laura K.; Sivley, R. Michael; Bush, William S.

2013-01-01

Efficient storage and retrieval of genomic annotations based on range intervals is necessary, given the amount of data produced by next-generation sequencing studies. The indexing strategies of relational database systems (such as MySQL) greatly inhibit their use in genomic annotation tasks. This has led to the development of stand-alone applications that are dependent on flat-file libraries. In this work, we introduce MyNCList, an implementation of the NCList data structure within a MySQL database. MyNCList enables the storage, update and rapid retrieval of genomic annotations from the convenience of a relational database system. Range-based annotations of 1 million variants are retrieved in under a minute, making this approach feasible for whole-genome annotation tasks. Database URL: https://github.com/bushlab/mynclist PMID:23894185

Rapid storage and retrieval of genomic intervals from a relational database system using nested containment lists.

PubMed

Wiley, Laura K; Sivley, R Michael; Bush, William S

2013-01-01

Efficient storage and retrieval of genomic annotations based on range intervals is necessary, given the amount of data produced by next-generation sequencing studies. The indexing strategies of relational database systems (such as MySQL) greatly inhibit their use in genomic annotation tasks. This has led to the development of stand-alone applications that are dependent on flat-file libraries. In this work, we introduce MyNCList, an implementation of the NCList data structure within a MySQL database. MyNCList enables the storage, update and rapid retrieval of genomic annotations from the convenience of a relational database system. Range-based annotations of 1 million variants are retrieved in under a minute, making this approach feasible for whole-genome annotation tasks. Database URL: https://github.com/bushlab/mynclist.

Long-read sequencing of chicken transcripts and identification of new transcript isoforms.

PubMed

Thomas, Sean; Underwood, Jason G; Tseng, Elizabeth; Holloway, Alisha K

2014-01-01

The chicken has long served as an important model organism in many fields, and continues to aid our understanding of animal development. Functional genomics studies aimed at probing the mechanisms that regulate development require high-quality genomes and transcript annotations. The quality of these resources has improved dramatically over the last several years, but many isoforms and genes have yet to be identified. We hope to contribute to the process of improving these resources with the data presented here: a set of long cDNA sequencing reads, and a curated set of new genes and transcript isoforms not currently represented in the most up-to-date genome annotation currently available to the community of researchers who rely on the chicken genome.

Annotated Bibliographies.

ERIC Educational Resources Information Center

Totten, Sam; Alexander, Susan

1985-01-01

Intended for elementary, secondary, and college teachers, this listing cites print materials dealing with nuclear warfare. Included are nonfiction, fiction, journals, newsletters, curriculum materials, and organizations. (RM)

Large-scale, multi-genome analysis of alternate open reading frames in bacteria and archaea.

PubMed

Veloso, Felipe; Riadi, Gonzalo; Aliaga, Daniela; Lieph, Ryan; Holmes, David S

2005-01-01

Analysis of over 300,000 annotated genes in 105 bacterial and archaeal genomes reveals an unexpectedly high frequency of large (>300 nucleotides) alternate open reading frames (ORFs). Especially notable is the very high frequency of alternate ORFs in frames +3 and -1 (where the annotated gene is defined as frame +1). The occurrence of alternate ORFs is correlated with genomic G+C content and is strongly influenced by synonymous codon usage bias. The frequency of alternate ORFs in frame -1 is also influenced by the occurrence of codons encoding leucine and serine in frame +1. Although some alternate ORFs have been shown to encode proteins, many others are probably not expressed because they lack appropriate signals for transcription and translation. These latter can be mis-annotated by automatic gene finding programs leading to errors in public databases. Especially prone to mis-annotation is frame -1, because it exhibits a potential codon usage and theoretical capacity to encode proteins with an amino acid composition most similar to real genes. Some alternate ORFs are conserved across bacterial or archaeal species, and can give rise to misannotated "conserved hypothetical" genes, while others are unique to a genome and are misidentified as "hypothetical orphan" genes, contributing significantly to the orphan gene paradox.

Notable Canadian Children's Books. 1983 Supplement = Un choix de livres Canadiens pour la jeunesse. Supplement 1983.

ERIC Educational Resources Information Center

Aubrey, Irene E., Ed.; And Others

This annotated bibliography reviews 32 children's books published in Canada in 1983. The list is arranged alphabetically by author and annotations and reviews are included in both English and French. Each book is designated as suitable for a particular age group. The 18 books published in English and the 14 published in French are reviewed in…

A Selected Bibliography on Language Input To Young Children. CAL-ERIC/CLL Series on Languages and Linguistics.

ERIC Educational Resources Information Center

Andersen, Elaine S., Comp.

Thirty-one papers and reports dealing with recent work on language input to children are listed in this annotated bibliography. The annotations, which are descriptive rather than evaluative, summarize the design of each study, the nature of the data, and some of the results and conclusions. Entries by P. Broen, J. Bynon, L. Cherry, J. M. Crawford,…

Virome Assembly and Annotation: A Surprise in the Namib Desert

PubMed Central

Hesse, Uljana; van Heusden, Peter; Kirby, Bronwyn M.; Olonade, Israel; van Zyl, Leonardo J.; Trindade, Marla

2017-01-01

Sequencing, assembly, and annotation of environmental virome samples is challenging. Methodological biases and differences in species abundance result in fragmentary read coverage; sequence reconstruction is further complicated by the mosaic nature of viral genomes. In this paper, we focus on biocomputational aspects of virome analysis, emphasizing latent pitfalls in sequence annotation. Using simulated viromes that mimic environmental data challenges we assessed the performance of five assemblers (CLC-Workbench, IDBA-UD, SPAdes, RayMeta, ABySS). Individual analyses of relevant scaffold length fractions revealed shortcomings of some programs in reconstruction of viral genomes with excessive read coverage (IDBA-UD, RayMeta), and in accurate assembly of scaffolds ≥50 kb (SPAdes, RayMeta, ABySS). The CLC-Workbench assembler performed best in terms of genome recovery (including highly covered genomes) and correct reconstruction of large scaffolds; and was used to assemble a virome from a copper rich site in the Namib Desert. We found that scaffold network analysis and cluster-specific read reassembly improved reconstruction of sequences with excessive read coverage, and that strict data filtering for non-viral sequences prior to downstream analyses was essential. In this study we describe novel viral genomes identified in the Namib Desert copper site virome. Taxonomic affiliations of diverse proteins in the dataset and phylogenetic analyses of circovirus-like proteins indicated links to the marine habitat. Considering additional evidence from this dataset we hypothesize that viruses may have been carried from the Atlantic Ocean into the Namib Desert by fog and wind, highlighting the impact of the extended environment on an investigated niche in metagenome studies. PMID:28167933

Your Reading: A Booklist for Junior High and Middle School Students. Seventh Edition.

ERIC Educational Resources Information Center

Davis, James E., Ed.; Davis, Hazel K., Ed.

This annotated bibliography, for junior high and middle school students, describes nearly 2,000 books to read for pleasure, for school assignments, or merely to satisfy curiosity. Books included have been published mostly in the last five years and are divided into six major sections: fiction, drama, picture books for older readers, poetry, short…

Enhancing L2 Vocabulary Acquisition through Implicit Reading Support Cues in E-books

ERIC Educational Resources Information Center

Liu, Yeu-Ting; Leveridge, Aubrey Neil

2017-01-01

Various explicit reading support cues, such as gloss, QR codes and hypertext annotation, have been embedded in e-books designed specifically for fostering various aspects of language development. However, explicit visual cues are not always reliably perceived as salient or effective by language learners. The current study explored the efficacy of…

RESEARCH IN READING FOR THE MIDDLE GRADES. AN ANNOTATED BIBLIOGRAPHY.

ERIC Educational Resources Information Center

CUTTS, WARREN G.

THIS BULLETIN PRESENTS RESEARCH STUDIES IN READING ON THE UPPER ELEMENTARY GRADE LEVEL DURING THE PERIOD FROM 1955 THROUGH 1960. THIS COMPILATION WAS UNDERTAKEN BY THE OFFICE OF EDUCATION IN AN ATTEMPT TO BRING TOGETHER THE UNPUBLISHED AS WELL AS PUBLISHED STUDIES OF THAT 5-YEAR PERIOD. THE 238 STUDIES WHICH ARE OUTLINED, SUMMARIZED, AND ANNOTATED…

Catalog of Audiovisual Materials Related to Rehabilitation.

ERIC Educational Resources Information Center

Mann, Joe, Ed.; Henderson, Jim, Ed.

An annotated listing of a variety of audiovisual formats on content related to the social-rehabilitation process is provided. The materials in the listing were selected from a collection of over 200 audiovisual catalogs. The major portion of the materials has not been screened. The materials are classified alphabetically by the following subject…

Mass Communication in Taiwan: An Annotated Bibliography. Asian Mass Communication Bibliography Series 5.

ERIC Educational Resources Information Center

Yang, Shou-Jung, Comp.

This bibliography lists and describes published and unpublished material relating to mass communications in Taiwan, from 1945 to 1973. Almost all the items listed are written in Chinese. The bibliography is divided into 17 sections: bibliography and reference material; communication theory and research methods; communication (general); media…

Marketing: A Bibliography of Marketing Reference Sources. The University of Rhode Island University Library.

ERIC Educational Resources Information Center

Masten, Lisa

This annotated bibliography provides a selected list of marketing reference sources for undergraduate and graduate business students interested in marketing and related topics. All sources listed are available in the Reference Department at the University Library at the University of Rhode Island Kingston campus. Most sources, with the exception…

Selected Bibliography and Abstracts of Educational Materials in Pakistan. Volume 14, No. 4, Period Covered October - December, 1980.

ERIC Educational Resources Information Center

Saad, Geti, Comp.

This annotated listing cites newspaper articles, government publications, and monographs dealing with education in Pakistan. Items cited were published between October and December 1980. The listing is organized by subject area. Subjects include: administration, organization, and financing of education; adult education; agricultural education;…

Selected Bibliography and Abstracts of Educational Materials in Pakistan. Vol. 14, No. 3. Period Covered July-September, 1980.

ERIC Educational Resources Information Center

Saad, Geti, Comp.

This annotated listing cites newspaper articles, government publications, and monographs dealing with education in Pakistan. Items cited were published between July and September 1980. The listing is organized by subject area. Subjects include: administration, organization, and finance of education; adult education; curriculum; development of…

Selected Bibliography and Abstracts of Educational Materials in Pakistan. Volume 14, No. 2, 1980. Period Covered April-June 1980.

ERIC Educational Resources Information Center

Saad, Geti, Comp.

This annotated listing cites newspaper articles, government publications, journal articles, and monographs dealing with education in Pakistan. Items cited were published between April and June 1980. The listing is organized by subject area. Subjects include administration, organization, and financing of education; curriculum; development of…

A Bibliography on the Black American.

ERIC Educational Resources Information Center

United States Air Forces in Europe, Wiesbaden (West Germany).

This bibliography provides a comprehensive listing of book and audio-visual materials of interest to, by, and about Black Americans. Annotations are given for a majority of the books and selections are marked if they are recommended for all libraries or for large libraries. Books are listed under subject headings including: Africa, art, Black…

Cinemabilia; Catalogue of Film Literature.

ERIC Educational Resources Information Center

Cinemabilia, New York, NY.

The catalog lists and briefly annotates more than 3,500 current, second-hand, and out-of-print books about film that are available from Cinemabilia, New York City. The catalog is divided into 37 categories. The section on special genre lists works on horror, science fiction, Westerns, and Tarzan films, ranging from "Drums of Fu-Manchu" to "Movie…

Legal Information Resources: A Guide for Maryland Libraries.

ERIC Educational Resources Information Center

Miller, Michael S., Ed.

This guidebook and annotated bibliography is designed to provide a basic listing of sources of state (Maryland), federal, and some general law for the non-law library community, and to offer some insight into the suggested approaches for dealing with legal reference inquiries. Listings of contributors and members of the Task Force on Improving…

A Resource Guide on Indian Arts and Crafts for Elementary and Secondary Teachers.

ERIC Educational Resources Information Center

Fagot, Madeleine

American Indian arts and crafts reference materials (published 1923-1973) are listed in this annotated resource guide for elementary and secondary school teachers. Approximately 260 listings are given for: books, films and filmstrips, maps and charts, picture sets, magazines, bibliographies and indexes, slide kits, transparencies, distributor's…

Computer Books for Children. A Basic List.

ERIC Educational Resources Information Center

Cuyahoga County Public Library, Cleveland, OH.

This annotated bibliography describes more than 60 children's computer books recommended for inclusion in an average size children's library collection. These books were published between 1983 and 1985, and each was chosen by a committee of children's librarians. The list is arranged in three sections: (1) Computer Literacy; (2) How to Program;…

Suggested Resource List. Wisconsin Nutrition Education and Training Program. 4th Revised Edition.

ERIC Educational Resources Information Center

Wisconsin State Dept. of Public Instruction, Madison.

This resource list on nutrition is divided into 16 subject matter categories. References within each category include information on intended audience, type of media, title, date, author, publisher, price, and annotations. Subjects covered are: (1) athletics/physical fitness; (2) careers; (3) consumerism; (4) dental health; (5) diet/health and…

Selected Research Tools in Economics, Labor and Industrial Relations.

ERIC Educational Resources Information Center

Kaye, Ronald J.

Twenty-two indexing and abstracting services and general reference sources in the areas of labor and industrial relations are listed in this selective bibliography for users of State University of New York at Albany Libraries. Classification numbers are included for each source and most have annotations. Materials are listed under four…

An Annotated Guide to Audio-Visual Materials for Teaching Shakespeare.

ERIC Educational Resources Information Center

Albert, Richard N.

Audio-visual materials, found in a variety of periodicals, catalogs, and reference works, are listed in this guide to expedite the process of finding appropriate classroom materials for a study of William Shakespeare in the classroom. Separate listings of films, filmstrips, and recordings are provided, with subdivisions for "The Plays"…

Research publications of the Pringle Falls Experimental Forest, central Oregon Cascade Range, 1930 to 1993.

Treesearch

A. Youngblood

1995-01-01

An annotated bibliography of publications resulting from research at the Pringle Falls Experimental Forest, Deschutes National Forest, in central Oregon from 1930 to 1993 is presented. Over 100 publications are listed, including papers, theses, and reports. An index is provided that cross-references the listings under appropriate keywords.

About Aging: A Catalog of Films with a Special Section on Videocassettes. Fourth Edition.

ERIC Educational Resources Information Center

Allyn, Mildred V., Comp.

This annotated bibliography lists over 600 16mm films, videocassettes, and feature length films appropriate for gerontology programs. The films are listed alphabetically by title. The following information is provided: technical (running time, color or black and white, year of release), producer, availability, distributor, and sale/rental costs. A…

Large Print Bibliography, 1990.

ERIC Educational Resources Information Center

South Dakota State Library, Pierre.

This bibliography lists materials that are available in large print format from the South Dakota State Library. The annotated entries are printed in large print and include the title of the material and its author, call number, publication date, and type of story or subject area covered. Some recorded items are included in the list. The entries…

Animal Rights: Selected Resources and Suggestions for Further Study.

ERIC Educational Resources Information Center

Davidoff, Donald J.

1989-01-01

Presents an annotated list of selected resources intended to serve as a guide to the growing amount of material on animal rights. Suggestions to aid in additional research include subject headings used to find books, indexes used to locate periodical articles, sources for locating organizations, and a selected list of animal rights organizations.…

A DESCRIPTION AND SOURCE LISTING OF PROFESSIONAL INFORMATION IN AGRICULTURAL EDUCATION, 1963-64.

ERIC Educational Resources Information Center

SLEDGE, GEORGE W.; AND OTHERS

BRIEF ANNOTATIONS ARE GIVEN FOR MANY OF THE 107 REFERENCES LISTED UNDER THE FOLLOWING CATEGORIES -- (1) ADULT EDUCATION, (2) AGRICULTURAL ENGINEERING, (3) ANIMAL SCIENCE, (4) CURRICULUM DEVELOPMENT AND CURRICULUM IN CROPS, ENTOMOLOGY, FARM MANAGEMENT, FARM MECHANICS, AND LIVESTOCK, (5) FARM BUSINESS MANAGEMENT AND MARKETING, (6) FORESTRY, (7)…

Libros de Ciencias en Espanol (Science Trade Books in Spanish).

ERIC Educational Resources Information Center

Schon, Isabel

1999-01-01

Presents a list of recently published science books in Spanish. Each entry in the annotated bibliography contains publication information, suggested grade level(s), and a brief description of the publication. Books are listed under the categories of Biology, Physical Science, General Science, and For the Very Young. Also includes references and…

The Chinese in Children's Books.

ERIC Educational Resources Information Center

New York Public Library, NY.

This is a selective annotated list of children's books about China and the Chinese. Topics range from dynasties, the era of Western influence, emigration, revolution, to present day affairs. Most of the books have a Chinese setting, but some are about the Chinese in America. Listings are made under categories such as picture books, stories for…

Food and Nutrition Supplementary Resources: A Selective Annotated Bibliography for Elementary Schools, K-6.

ERIC Educational Resources Information Center

Minnesota State Dept. of Education, St. Paul. Child Nutrition Section.

This selected bibliography provides elementary school educators with a list of books currently in print which provide supplementary resources on food, nutrition and related topics. All books listed were judged factually accurate and suitable for the grade level designated, offering material that would implement, enrich and support elementary…

Vocational Instructional Materials for Trade and Industrial Education Available from Federal Agencies.

ERIC Educational Resources Information Center

Hill, Carol L., Comp.

This listing of federally produced curriculum and instructional materials for trade and industrial education is one of eight annotated bibliographies that provide information for vocational educators at the secondary, postsecondary, and adult levels. Introductory information given includes a description of how to use the listing and sources and…

Appalachian Books and Media for Public and College Libraries.

ERIC Educational Resources Information Center

Bennett, George E., Comp.

West Virginia University has compiled an annotated bibliography of the University's collection on Appalachia. The first section is devoted to in-print books, and the second lists media. Books are listed alphabetically by author within the following subject areas; (1) history, politics, and economy; (2) social structure and conditions; (3) coal,…

Prevention Strategies for Developmental Disabilities: An Annotated Resource Listing.

ERIC Educational Resources Information Center

Hedrick, Bonnie M.; And Others

This listing of print and non-print resources related to the prevention of developmental disabilities is intended for use by health professionals and the general public. An introductory section defines developmental disabilities, offers a statement of the problem in Ohio, and describes Ohio's system for prevention/early intervention and the Ohio…

The Lung Image Database Consortium (LIDC): ensuring the integrity of expert-defined "truth".

PubMed

Armato, Samuel G; Roberts, Rachael Y; McNitt-Gray, Michael F; Meyer, Charles R; Reeves, Anthony P; McLennan, Geoffrey; Engelmann, Roger M; Bland, Peyton H; Aberle, Denise R; Kazerooni, Ella A; MacMahon, Heber; van Beek, Edwin J R; Yankelevitz, David; Croft, Barbara Y; Clarke, Laurence P

2007-12-01

Computer-aided diagnostic (CAD) systems fundamentally require the opinions of expert human observers to establish "truth" for algorithm development, training, and testing. The integrity of this "truth," however, must be established before investigators commit to this "gold standard" as the basis for their research. The purpose of this study was to develop a quality assurance (QA) model as an integral component of the "truth" collection process concerning the location and spatial extent of lung nodules observed on computed tomography (CT) scans to be included in the Lung Image Database Consortium (LIDC) public database. One hundred CT scans were interpreted by four radiologists through a two-phase process. For the first of these reads (the "blinded read phase"), radiologists independently identified and annotated lesions, assigning each to one of three categories: "nodule >or=3 mm," "nodule <3 mm," or "non-nodule >or=3 mm." For the second read (the "unblinded read phase"), the same radiologists independently evaluated the same CT scans, but with all of the annotations from the previously performed blinded reads presented; each radiologist could add to, edit, or delete their own marks; change the lesion category of their own marks; or leave their marks unchanged. The post-unblinded read set of marks was grouped into discrete nodules and subjected to the QA process, which consisted of identification of potential errors introduced during the complete image annotation process and correction of those errors. Seven categories of potential error were defined; any nodule with a mark that satisfied the criterion for one of these categories was referred to the radiologist who assigned that mark for either correction or confirmation that the mark was intentional. A total of 105 QA issues were identified across 45 (45.0%) of the 100 CT scans. Radiologist review resulted in modifications to 101 (96.2%) of these potential errors. Twenty-one lesions erroneously marked as lung nodules after the unblinded reads had this designation removed through the QA process. The establishment of "truth" must incorporate a QA process to guarantee the integrity of the datasets that will provide the basis for the development, training, and testing of CAD systems.

BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation

PubMed Central

Kiefer, Christina; Fehlmann, Tobias; Backes, Christina

2017-01-01

Abstract Metagenomics-based studies of mixed microbial communities are impacting biotechnology, life sciences and medicine. Computational binning of metagenomic data is a powerful approach for the culture-independent recovery of population-resolved genomic sequences, i.e. from individual or closely related, constituent microorganisms. Existing binning solutions often require a priori characterized reference genomes and/or dedicated compute resources. Extending currently available reference-independent binning tools, we developed the BusyBee Web server for the automated deconvolution of metagenomic data into population-level genomic bins using assembled contigs (Illumina) or long reads (Pacific Biosciences, Oxford Nanopore Technologies). A reversible compression step as well as bootstrapped supervised binning enable quick turnaround times. The binning results are represented in interactive 2D scatterplots. Moreover, bin quality estimates, taxonomic annotations and annotations of antibiotic resistance genes are computed and visualized. Ground truth-based benchmarks of BusyBee Web demonstrate comparably high performance to state-of-the-art binning solutions for assembled contigs and markedly improved performance for long reads (median F1 scores: 70.02–95.21%). Furthermore, the applicability to real-world metagenomic datasets is shown. In conclusion, our reference-independent approach automatically bins assembled contigs or long reads, exhibits high sensitivity and precision, enables intuitive inspection of the results, and only requires FASTA-formatted input. The web-based application is freely accessible at: https://ccb-microbe.cs.uni-saarland.de/busybee. PMID:28472498

American Literature; Study Guide and Reading List. Revised.

ERIC Educational Resources Information Center

Lewis, John

Intended for use by adult readers who wish to independently continue their education at the college level, this study guide and reading list, compiled for the Dallas public library system, provides suggestions for the study of American literature. Readings from the works of major authors from each of the following historical periods are…

Recommended Readings in Literature: Kindergarten through Grade Eight. 1996 Revised Edition.

ERIC Educational Resources Information Center

Prescott, Stephanie, Ed.

This list of over 1,250 readings was compiled by teachers, administrators, curriculum planners, and librarians throughout California to encourage students to read, to help local curriculum planners select books, and to stimulate educators to evaluate their literature programs. The list contains three types of literature: core, including what is…

Guide to Reference Sources on Africa, Asia, Latin America and the Caribbean, Middle East and North Africa, and Russia and East Europe: Selected and Annotated.

ERIC Educational Resources Information Center

Kennedy, James R., Jr.; And Others

This selected annotated bibliography of reference sources is designed to help college students prepare for the future by identifying critical sources on the societies and cultures of most of the world's people who have long been neglected in higher education. Encyclopedias, handbooks, and yearbooks are listed first under each area. Next are the…

An Annotated Guide of Available Films. English for Speakers of Other Languages (ESOL) Secondary Centers. Beginning and Intermediate Levels.

ERIC Educational Resources Information Center

Hughes, Linda; Nahmani, Lois

This guide to films appropriate for junior and senior high school classes of English as a second language (ESL) includes general comments on the use of films in ESL instruction, notes on how to use the film guide, an outline of procedures and class activities for the presentation of films, and an annotated filmography. The films are listed in two…

Questioning the Validity of a State Reading List

ERIC Educational Resources Information Center

Berridge, Gina; Thomas, Jeff

2013-01-01

Quality incorporation of children's literature has long been supported to help students learn. The purpose of this study was to examine the 79 fiction selections of our state's sponsored reading list for grades K-2. The list was examined for original publication date, selections recognized as award winners, sex of authors, sex of protagonist, race…

Graduate Programs and Faculty in Reading. Third Edition.

ERIC Educational Resources Information Center

Seifert, Mary, Comp.

More than 300 graduate reading programs in the United States and Canada are listed in this book. The programs are arranged alphabetically by state, with Canadian institutions listed separately. The programs within each state or province are then arranged alphabetically by institution. Each listing provides the name and address of the program…

High Interest Easy Reading: For Junior and Senior High School Students. Fourth Edition.

ERIC Educational Resources Information Center

Agee, Hugh, Ed.

Intended for students who are able to read but lack the motivation to do so because they have not encountered books that speak to their interests and concerns, this revised booklist contains more than 400 titles. The titles represent books of high quality that deal with topics of interest to the average adolescent. Titles and annotations are…

Web-Based Reading Annotation System with an Attention-Based Self-Regulated Learning Mechanism for Promoting Reading Performance

ERIC Educational Resources Information Center

Chen, Chih-Ming; Huang, Sheng-Hui

2014-01-01

Due to the rapid development of information technology, web-based learning has become a dominant trend. That is, learners can often learn anytime and anywhere without being restricted by time and space. Autonomic learning primarily occurs in web-based learning environments, and self-regulated learning (SRL) is key to autonomic learning…

Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals

PubMed Central

2013-01-01

Background Genomic and transcriptomic sequence data are essential tools for tackling ecological problems. Using an approach that combines next-generation sequencing, de novo transcriptome assembly, gene annotation and synthetic gene construction, we identify and cluster the protein families from Favia corals from the northern Red Sea. Results We obtained 80 million 75 bp paired-end cDNA reads from two Favia adult samples collected at 65 m (Fav1, Fav2) on the Illumina GA platform, and generated two de novo assemblies using ABySS and CAP3. After removing redundancy and filtering out low quality reads, our transcriptome datasets contained 58,268 (Fav1) and 62,469 (Fav2) contigs longer than 100 bp, with N50 values of 1,665 bp and 1,439 bp, respectively. Using the proteome of the sea anemone Nematostella vectensis as a reference, we were able to annotate almost 20% of each dataset using reciprocal homology searches. Homologous clustering of these annotated transcripts allowed us to divide them into 7,186 (Fav1) and 6,862 (Fav2) homologous transcript clusters (E-value ≤ 2e-30). Functional annotation categories were assigned to homologous clusters using the functional annotation of Nematostella vectensis. General annotation of the assembled transcripts was improved 1-3% using the Acropora digitifera proteome. In addition, we screened these transcript isoform clusters for fluorescent proteins (FPs) homologs and identified seven potential FP homologs in Fav1, and four in Fav2. These transcripts were validated as bona fide FP transcripts via robust fluorescence heterologous expression. Annotation of the assembled contigs revealed that 1.34% and 1.61% (in Fav1 and Fav2, respectively) of the total assembled contigs likely originated from the corals’ algal symbiont, Symbiodinium spp. Conclusions Here we present a study to identify the homologous transcript isoform clusters from the transcriptome of Favia corals using a far-related reference proteome. Furthermore, the symbiont-derived transcripts were isolated from the datasets and their contribution quantified. This is the first annotated transcriptome of the genus Favia, a major increase in genomics resources available in this important family of corals. PMID:23937070

Propagating annotations of molecular networks using in silico fragmentation

PubMed Central

da Silva, Ricardo R.; Wang, Mingxun; Fox, Evan; Balunas, Marcy J.; Klassen, Jonathan L.; Dorrestein, Pieter C.

2018-01-01

The annotation of small molecules is one of the most challenging and important steps in untargeted mass spectrometry analysis, as most of our biological interpretations rely on structural annotations. Molecular networking has emerged as a structured way to organize and mine data from untargeted tandem mass spectrometry (MS/MS) experiments and has been widely applied to propagate annotations. However, propagation is done through manual inspection of MS/MS spectra connected in the spectral networks and is only possible when a reference library spectrum is available. One of the alternative approaches used to annotate an unknown fragmentation mass spectrum is through the use of in silico predictions. One of the challenges of in silico annotation is the uncertainty around the correct structure among the predicted candidate lists. Here we show how molecular networking can be used to improve the accuracy of in silico predictions through propagation of structural annotations, even when there is no match to a MS/MS spectrum in spectral libraries. This is accomplished through creating a network consensus of re-ranked structural candidates using the molecular network topology and structural similarity to improve in silico annotations. The Network Annotation Propagation (NAP) tool is accessible through the GNPS web-platform https://gnps.ucsd.edu/ProteoSAFe/static/gnps-theoretical.jsp. PMID:29668671

Propagating annotations of molecular networks using in silico fragmentation.

PubMed

da Silva, Ricardo R; Wang, Mingxun; Nothias, Louis-Félix; van der Hooft, Justin J J; Caraballo-Rodríguez, Andrés Mauricio; Fox, Evan; Balunas, Marcy J; Klassen, Jonathan L; Lopes, Norberto Peporine; Dorrestein, Pieter C

2018-04-01

The annotation of small molecules is one of the most challenging and important steps in untargeted mass spectrometry analysis, as most of our biological interpretations rely on structural annotations. Molecular networking has emerged as a structured way to organize and mine data from untargeted tandem mass spectrometry (MS/MS) experiments and has been widely applied to propagate annotations. However, propagation is done through manual inspection of MS/MS spectra connected in the spectral networks and is only possible when a reference library spectrum is available. One of the alternative approaches used to annotate an unknown fragmentation mass spectrum is through the use of in silico predictions. One of the challenges of in silico annotation is the uncertainty around the correct structure among the predicted candidate lists. Here we show how molecular networking can be used to improve the accuracy of in silico predictions through propagation of structural annotations, even when there is no match to a MS/MS spectrum in spectral libraries. This is accomplished through creating a network consensus of re-ranked structural candidates using the molecular network topology and structural similarity to improve in silico annotations. The Network Annotation Propagation (NAP) tool is accessible through the GNPS web-platform https://gnps.ucsd.edu/ProteoSAFe/static/gnps-theoretical.jsp.

Evolution and Diversity of Transposable Elements in Vertebrate Genomes.

PubMed

Sotero-Caio, Cibele G; Platt, Roy N; Suh, Alexander; Ray, David A

2017-01-01

Transposable elements (TEs) are selfish genetic elements that mobilize in genomes via transposition or retrotransposition and often make up large fractions of vertebrate genomes. Here, we review the current understanding of vertebrate TE diversity and evolution in the context of recent advances in genome sequencing and assembly techniques. TEs make up 4-60% of assembled vertebrate genomes, and deeply branching lineages such as ray-finned fishes and amphibians generally exhibit a higher TE diversity than the more recent radiations of birds and mammals. Furthermore, the list of taxa with exceptional TE landscapes is growing. We emphasize that the current bottleneck in genome analyses lies in the proper annotation of TEs and provide examples where superficial analyses led to misleading conclusions about genome evolution. Finally, recent advances in long-read sequencing will soon permit access to TE-rich genomic regions that previously resisted assembly including the gigantic, TE-rich genomes of salamanders and lungfishes. © The Author(s) 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

A Selected and Annotated Resource List of Materials on the Holocaust.

ERIC Educational Resources Information Center

B'nai B'rith, New York, NY. Anti-Defamation League.

This guide for students, teachers, and librarians in secondary schools lists over 200 books and films about the Holocaust. The contents have been selected to help students and others find out what happened during the Holocaust, understand some of the reasons for it, develop a better understanding of the Jewish people, and reflect on their own…

Current Literature in Family Planning, November 1972, No. 51.

ERIC Educational Resources Information Center

Planned Parenthood--World Population, New York, NY. Katherine Dexter McCormick Library.

Abstracts of current publications in the fields of population and family planning are contained in this monthly acquisitions list of the Katherine Dexter McCormick Library, Planned Parenthood, New York. Organized in two parts, Part 1 contains an annotated list of the books most recently acquired by the Library, marked with its Library call number,…

Mass Communication in Singapore: An Annotated Bibliography. Asian Mass Communication Bibliography Series 6.

ERIC Educational Resources Information Center

Espejo, Cristina Y., Ed.; Fontgalland, Guy de, Ed.

This bibliography lists and describes published and unpublished material relating to mass communications in Singapore, from 1945 to 1973. Most of the items listed are written in English; a limited number are in Chinese. The bibliography is divided into 18 sections: bibliography and reference material; communication theory and research methods;…

Record of Current Educational Publications. Bulletin, 1926, No. 15

ERIC Educational Resources Information Center

Bureau of Education, Department of the Interior, 1926

1926-01-01

This bulletin contains a classified and annotated list of current educational publications received by the library of the Bureau of Education to April 1, 1926. The last preceding list in the series was issued as Bulletin, 1925, No. 14, and comprised publications received by the Bureau of Education to April 1, 1925. The present bulletin accordingly…

75 FR 77521 - National Organic Program; Amendments to the National List of Allowed and Prohibited Substances...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-12-13

...-08-06FR] RIN 0581-AC91 National Organic Program; Amendments to the National List of Allowed and... (Secretary) by the National Organic Standards Board (NOSB) from November 30, 2007, and May 22, 2008. This... restrictive annotations, for use in organic crop production, and adds gellan gum, fortified cooking wine...

Selected Bibliography and Abstracts of Educational Materials in Pakistan. Volume 6, Number 1, 1972. Period Covered January-March 1972.

ERIC Educational Resources Information Center

Saad, Geti, Comp.

The annotated bibliography lists 111 entries of selected educational materials from Pakistan covering the period from January through March 1972. Entries are listed alphabetically by author under the following thirty-one categories; 1) administrative, organization and financing of education; 2) agricultural education; 3) childhood education; 4)…

Parental Involvement in the Educational Process of Children with Special Needs. An Annotated Report. [Final Report] and Research Analysis.

ERIC Educational Resources Information Center

Kreger, Robert D.

A listing of resources is presented for parents of handicapped children. Resources are categorized according to the following types: programs, organizations, products, and additional resources; federally funded programs; national parent organizations; local parent training; and handbooks, book lists, and media. Entries are organized according to…

Birds and mammals of Manitou Experimental Forest, Colorado

Treesearch

Meredith J. Morris; Vincent H. Reld; Richard E. Pillmore; Mary C. Hammer

1977-01-01

Seasonal occurrence, relative abundance, and habitat preference are listed for 90 bird and 41 mammal species that can be found at Manitou Experimental Forest. An annotated list is given also for an additional 70 casual or accidental bird species. Manitou Experimental Forest is located near Colorado Springs in the montane zone of the Colorado Front Range.

Report on the Analysis of Some Process-Oriented Curricula. An Annotated Listing. Program Report R101.

ERIC Educational Resources Information Center

Bernstein, Susan; And Others

This report contains 20 summary-descriptions of curriculum programs and materials selected by the Institute for possible inclusion in its synthesis and validation of a K-6 process-promoting curriculum. Each description includes information on the developer and publisher plus a list of references (mostly published descriptions and critiques).…

Record of Current Educational Publications. Bulletin, 1927, No. 38

ERIC Educational Resources Information Center

Bureau of Education, Department of the Interior, 1927

1927-01-01

This bulletin comprises a classified and annotated list of current educational publications received by the library of the Bureau of Education during the third quarter of 1927, July to September, inclusive. The last preceding list in this series of records was issued as Bulletin, 1927, No. 25, and comprised publications received by the Bureau to…

Employee Relations Bibliography: Public, Non-Profit and Professional Employment. Essay, Annotated Listing, Indexes.

ERIC Educational Resources Information Center

Tice, Terrence N.

This comprehensive listing of 2,724 bibliographic items from 1967 through early 1977 includes significant English-language material on the contractual relationship between public employers and employees in the United States and Canada. (There are a few items in French.) Although access is given to the broader areas of public management and…

Cross-Cultural Communications in the Classroom: An Annotated Bibliography of Films and Videos, 1985.

ERIC Educational Resources Information Center

Zanger, Virginia Vogel, Comp.

This list of 19 films and videotape recordings was developed in response to teacher requests for practical methods and materials for teaching about cultural similarities and differences. An introductory section briefly discusses classroom teaching about cross-cultural issues and the potential uses of the films included in the list. Indexes list…

Hit List: Frequently Challenged Books for Young Adults.

ERIC Educational Resources Information Center

Monks, Merri M.; Pistolis, Donna Reidy

This book presents descriptions of 26 young adult titles that have been frequent targets of censorship attempts. Each entry provides an annotation for the book in question; examples of recent challenges; citations to reviews of the book and background articles; a list of awards garnered by the book or its author; references about the author;…

English Department Midi Course Curriculum for Juniors and Seniors at Norton High School.

ERIC Educational Resources Information Center

Zwicker, Lucille; And Others

This curriculum guide presents syllabi for seventeen ten-week "midi-courses" for juniors and seniors in high school. For each course, the syllabi contain a course description, goals, subject matter, materials, an annotated list of audio-visual aids, a list of behavioral objectives, some suggested activities, a glossary of terms, and a selection of…

A Guide to Reviews of Books, Plays, Films: A Selected Bibliography.

ERIC Educational Resources Information Center

Miller, Elaine N.

Forty reference sources for book, play, and film reviews are listed in this annotated bibliography: most of the titles cited are periodical indexes. A general section lists sources not restricted by subject or which contain references to all three kinds of reviews. Subsequent sections are the broad subject categories of humanities, science, social…

Water Films, 2nd Edition, 1965-1974.

ERIC Educational Resources Information Center

Canadian National Committee, Ottawa (Ontario).

This is an annotated listing of 455 films on hydrology, as well as on many allied fields. This second edition, much more comprehensive than the first, is not intended to serve as a critical evaluation, but should be used solely as a source of information as to what films are available. All films are listed alphabetically according to their titles…

Guide to Special Information in Scientific and Engineering Journals.

ERIC Educational Resources Information Center

Harris, Mary Elizabeth

This update of a 1983 annotated bibliography lists 298 special features or special issues of science and technology periodicals with emphasis on compilations of information that appear in periodicals on a regular basis. In addition to the 203 entries listed in the original edition, 95 new entries are included. Subjects covered in the guide include…

50 CFR 23.40 - What are the requirements for a certificate for artificially propagated plants?

Code of Federal Regulations, 2012 CFR

2012-10-01

... INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA (CITES) Application Procedures, Criteria, and... listed on the certificate, inventory sheet, or an approved species list. (4) You may export a specimen... exhibition. (iii) Is a hybrid of one or more Appendix-I species or taxa that is not annotated to include...

50 CFR 23.40 - What are the requirements for a certificate for artificially propagated plants?

Code of Federal Regulations, 2014 CFR

2014-10-01

... INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA (CITES) Application Procedures, Criteria, and... specifically approved for export and listed on the certificate, inventory sheet, or an approved species list... exhibition. (iii) Is a hybrid of one or more Appendix-I species or taxa that is not annotated to treat...

50 CFR 23.40 - What are the requirements for a certificate for artificially propagated plants?

Code of Federal Regulations, 2010 CFR

2010-10-01

... INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA (CITES) Application Procedures, Criteria, and... listed on the certificate, inventory sheet, or an approved species list. (4) You may export a specimen... exhibition. (iii) Is a hybrid of one or more Appendix-I species or taxa that is not annotated to include...

50 CFR 23.40 - What are the requirements for a certificate for artificially propagated plants?

Code of Federal Regulations, 2011 CFR

2011-10-01

... INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA (CITES) Application Procedures, Criteria, and... listed on the certificate, inventory sheet, or an approved species list. (4) You may export a specimen... exhibition. (iii) Is a hybrid of one or more Appendix-I species or taxa that is not annotated to include...