Science.gov

Sample records for annotated receipts capture

  1. 77 FR 4059 - Certain Electronic Devices for Capturing and Transmitting Images, and Components Thereof; Receipt...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-01-26

    ... Images, and Components Thereof, DN 2869; the Commission is soliciting comments on any public interest... COMMISSION Certain Electronic Devices for Capturing and Transmitting Images, and Components Thereof; Receipt of Complaint; Solicitation of Comments Relating to the Public Interest AGENCY: U.S....

  2. Arthemis: annotation software in an integrated capturing and analysis system for colonoscopy.

    PubMed

    Liu, Danyu; Cao, Yu; Kim, Ki-Hwan; Stanek, Sean; Doungratanaex-Chai, Bancha; Lin, Kungen; Tavanapong, Wallapak; Wong, Johnny; Oh, JungHwan; de Groen, Piet C

    2007-11-01

    Colonoscopy is an endoscopic technique that allows physicians to inspect the inside of the human colon. During a colonoscopic procedure, a tiny video camera at the tip of the endoscope generates a video signal of the internal mucosa of the colon. In current practice, the entire colonoscopic procedure is not routinely captured. Software tools providing easy access to important contents of videos that are digitally captured during colonoscopy are not available. Hence, it is very time consuming to review an entire video, locate important contents, annotate them, and extract the annotated contents for research, teaching, and training purposes. Arthemis, a software application, was developed to facilitate this process. For convenient data sharing, Arthemis allows annotation according to the European Gastrointestinal Society for Endoscopy (ESGE) Minimal Standard Terminology (MST), an internationally accepted standard for digestive endoscopy. Arthemis is part of our integrated capturing and content analysis system for colonoscopy called Endoscopic Multimedia Information System (EMIS). This paper presents Arthemis as a component of EMIS, the design and implementation of Arthemis, and key lessons learned from the development process.

  3. Computing human image annotation.

    PubMed

    Channin, David S; Mongkolwat, Pattanasak; Kleper, Vladimir; Rubin, Daniel L

    2009-01-01

    An image annotation is the explanatory or descriptive information about the pixel data of an image that is generated by a human (or machine) observer. An image markup is the graphical symbols placed over the image to depict an annotation. In the majority of current, clinical and research imaging practice, markup is captured in proprietary formats and annotations are referenced only in free text radiology reports. This makes these annotations difficult to query, retrieve and compute upon, hampering their integration into other data mining and analysis efforts. This paper describes the National Cancer Institute's Cancer Biomedical Informatics Grid's (caBIG) Annotation and Image Markup (AIM) project, focusing on how to use AIM to query for annotations. The AIM project delivers an information model for image annotation and markup. The model uses controlled terminologies for important concepts. All of the classes and attributes of the model have been harmonized with the other models and common data elements in use at the National Cancer Institute. The project also delivers XML schemata necessary to instantiate AIMs in XML as well as a software application for translating AIM XML into DICOM S/R and HL7 CDA. Large collections of AIM annotations can be built and then queried as Grid or Web services. Using the tools of the AIM project, image annotations and their markup can be captured and stored in human and machine readable formats. This enables the inclusion of human image observation and inference as part of larger data mining and analysis activities.

  4. Annotation and Classification of Argumentative Writing Revisions

    ERIC Educational Resources Information Center

    Zhang, Fan; Litman, Diane

    2015-01-01

    This paper explores the annotation and classification of students' revision behaviors in argumentative writing. A sentence-level revision schema is proposed to capture why and how students make revisions. Based on the proposed schema, a small corpus of student essays and revisions was annotated. Studies show that manual annotation is reliable with…

  5. Annotated Videography.

    ERIC Educational Resources Information Center

    United States Holocaust Memorial Museum, Washington, DC.

    This annotated list of 43 videotapes recommended for classroom use addresses various themes for teaching about the Holocaust, including: (1) overviews of the Holocaust; (2) life before the Holocaust; (3) propaganda; (4) racism, anti-Semitism; (5) "enemies of the state"; (6) ghettos; (7) camps; (8) genocide; (9) rescue; (10) resistance;…

  6. Gene Ontology annotations and resources.

    PubMed

    Blake, J A; Dolan, M; Drabkin, H; Hill, D P; Li, Ni; Sitnikov, D; Bridges, S; Burgess, S; Buza, T; McCarthy, F; Peddinti, D; Pillai, L; Carbon, S; Dietze, H; Ireland, A; Lewis, S E; Mungall, C J; Gaudet, P; Chrisholm, R L; Fey, P; Kibbe, W A; Basu, S; Siegele, D A; McIntosh, B K; Renfro, D P; Zweifel, A E; Hu, J C; Brown, N H; Tweedie, S; Alam-Faruque, Y; Apweiler, R; Auchinchloss, A; Axelsen, K; Bely, B; Blatter, M -C; Bonilla, C; Bouguerleret, L; Boutet, E; Breuza, L; Bridge, A; Chan, W M; Chavali, G; Coudert, E; Dimmer, E; Estreicher, A; Famiglietti, L; Feuermann, M; Gos, A; Gruaz-Gumowski, N; Hieta, R; Hinz, C; Hulo, C; Huntley, R; James, J; Jungo, F; Keller, G; Laiho, K; Legge, D; Lemercier, P; Lieberherr, D; Magrane, M; Martin, M J; Masson, P; Mutowo-Muellenet, P; O'Donovan, C; Pedruzzi, I; Pichler, K; Poggioli, D; Porras Millán, P; Poux, S; Rivoire, C; Roechert, B; Sawford, T; Schneider, M; Stutz, A; Sundaram, S; Tognolli, M; Xenarios, I; Foulgar, R; Lomax, J; Roncaglia, P; Khodiyar, V K; Lovering, R C; Talmud, P J; Chibucos, M; Giglio, M Gwinn; Chang, H -Y; Hunter, S; McAnulla, C; Mitchell, A; Sangrador, A; Stephan, R; Harris, M A; Oliver, S G; Rutherford, K; Wood, V; Bahler, J; Lock, A; Kersey, P J; McDowall, D M; Staines, D M; Dwinell, M; Shimoyama, M; Laulederkind, S; Hayman, T; Wang, S -J; Petri, V; Lowry, T; D'Eustachio, P; Matthews, L; Balakrishnan, R; Binkley, G; Cherry, J M; Costanzo, M C; Dwight, S S; Engel, S R; Fisk, D G; Hitz, B C; Hong, E L; Karra, K; Miyasato, S R; Nash, R S; Park, J; Skrzypek, M S; Weng, S; Wong, E D; Berardini, T Z; Huala, E; Mi, H; Thomas, P D; Chan, J; Kishore, R; Sternberg, P; Van Auken, K; Howe, D; Westerfield, M

    2013-01-01

    The Gene Ontology (GO) Consortium (GOC, http://www.geneontology.org) is a community-based bioinformatics resource that classifies gene product function through the use of structured, controlled vocabularies. Over the past year, the GOC has implemented several processes to increase the quantity, quality and specificity of GO annotations. First, the number of manual, literature-based annotations has grown at an increasing rate. Second, as a result of a new 'phylogenetic annotation' process, manually reviewed, homology-based annotations are becoming available for a broad range of species. Third, the quality of GO annotations has been improved through a streamlined process for, and automated quality checks of, GO annotations deposited by different annotation groups. Fourth, the consistency and correctness of the ontology itself has increased by using automated reasoning tools. Finally, the GO has been expanded not only to cover new areas of biology through focused interaction with experts, but also to capture greater specificity in all areas of the ontology using tools for adding new combinatorial terms. The GOC works closely with other ontology developers to support integrated use of terminologies. The GOC supports its user community through the use of e-mail lists, social media and web-based resources.

  7. Gene Ontology Annotations and Resources

    PubMed Central

    2013-01-01

    The Gene Ontology (GO) Consortium (GOC, http://www.geneontology.org) is a community-based bioinformatics resource that classifies gene product function through the use of structured, controlled vocabularies. Over the past year, the GOC has implemented several processes to increase the quantity, quality and specificity of GO annotations. First, the number of manual, literature-based annotations has grown at an increasing rate. Second, as a result of a new ‘phylogenetic annotation’ process, manually reviewed, homology-based annotations are becoming available for a broad range of species. Third, the quality of GO annotations has been improved through a streamlined process for, and automated quality checks of, GO annotations deposited by different annotation groups. Fourth, the consistency and correctness of the ontology itself has increased by using automated reasoning tools. Finally, the GO has been expanded not only to cover new areas of biology through focused interaction with experts, but also to capture greater specificity in all areas of the ontology using tools for adding new combinatorial terms. The GOC works closely with other ontology developers to support integrated use of terminologies. The GOC supports its user community through the use of e-mail lists, social media and web-based resources. PMID:23161678

  8. Ranking Biomedical Annotations with Annotator's Semantic Relevancy

    PubMed Central

    2014-01-01

    Biomedical annotation is a common and affective artifact for researchers to discuss, show opinion, and share discoveries. It becomes increasing popular in many online research communities, and implies much useful information. Ranking biomedical annotations is a critical problem for data user to efficiently get information. As the annotator's knowledge about the annotated entity normally determines quality of the annotations, we evaluate the knowledge, that is, semantic relationship between them, in two ways. The first is extracting relational information from credible websites by mining association rules between an annotator and a biomedical entity. The second way is frequent pattern mining from historical annotations, which reveals common features of biomedical entities that an annotator can annotate with high quality. We propose a weighted and concept-extended RDF model to represent an annotator, a biomedical entity, and their background attributes and merge information from the two ways as the context of an annotator. Based on that, we present a method to rank the annotations by evaluating their correctness according to user's vote and the semantic relevancy between the annotator and the annotated entity. The experimental results show that the approach is applicable and efficient even when data set is large. PMID:24899918

  9. Ranking biomedical annotations with annotator's semantic relevancy.

    PubMed

    Wu, Aihua

    2014-01-01

    Biomedical annotation is a common and affective artifact for researchers to discuss, show opinion, and share discoveries. It becomes increasing popular in many online research communities, and implies much useful information. Ranking biomedical annotations is a critical problem for data user to efficiently get information. As the annotator's knowledge about the annotated entity normally determines quality of the annotations, we evaluate the knowledge, that is, semantic relationship between them, in two ways. The first is extracting relational information from credible websites by mining association rules between an annotator and a biomedical entity. The second way is frequent pattern mining from historical annotations, which reveals common features of biomedical entities that an annotator can annotate with high quality. We propose a weighted and concept-extended RDF model to represent an annotator, a biomedical entity, and their background attributes and merge information from the two ways as the context of an annotator. Based on that, we present a method to rank the annotations by evaluating their correctness according to user's vote and the semantic relevancy between the annotator and the annotated entity. The experimental results show that the approach is applicable and efficient even when data set is large.

  10. Visualizing GO Annotations.

    PubMed

    Supek, Fran; Škunca, Nives

    2017-01-01

    Contemporary techniques in biology produce readouts for large numbers of genes simultaneously, the typical example being differential gene expression measurements. Moreover, those genes are often richly annotated using GO terms that describe gene function and that can be used to summarize the results of the genome-scale experiments. However, making sense of such GO enrichment analyses may be challenging. For instance, overrepresented GO functions in a set of differentially expressed genes are typically output as a flat list, a format not adequate to capture the complexities of the hierarchical structure of the GO annotation labels.In this chapter, we survey various methods to visualize large, difficult-to-interpret lists of GO terms. We catalog their availability-Web-based or standalone, the main principles they employ in summarizing large lists of GO terms, and the visualization styles they support. These brief commentaries on each software are intended as a helpful inventory, rather than comprehensive descriptions of the underlying algorithms. Instead, we show examples of their use and suggest that the choice of an appropriate visualization tool may be crucial to the utility of GO in biological discovery.

  11. Annotating user-defined abstractions for optimization

    SciTech Connect

    Quinlan, D; Schordan, M; Vuduc, R; Yi, Q

    2005-12-05

    This paper discusses the features of an annotation language that we believe to be essential for optimizing user-defined abstractions. These features should capture semantics of function, data, and object-oriented abstractions, express abstraction equivalence (e.g., a class represents an array abstraction), and permit extension of traditional compiler optimizations to user-defined abstractions. Our future work will include developing a comprehensive annotation language for describing the semantics of general object-oriented abstractions, as well as automatically verifying and inferring the annotated semantics.

  12. Automated Knowledge Annotation for Dynamic Collaborative Environments

    SciTech Connect

    Cowell, Andrew J.; Gregory, Michelle L.; Marshall, Eric J.; McGrath, Liam R.

    2009-05-19

    This paper describes the Knowledge Encapsulation Framework (KEF), a suite of tools to enable automated knowledge annotation for modeling and simulation projects. This framework can be used to capture evidence (e.g., facts extracted from journal articles and government reports), discover new evidence (from similar peer-reviewed material as well as social media), enable discussions surrounding domain-specific topics and provide automatically generated semantic annotations for improved corpus investigation. The current KEF implementation is presented within a wiki environment, providing a simple but powerful collaborative space for team members to review, annotate, discuss and align evidence with their modeling frameworks.

  13. Mining GO annotations for improving annotation consistency.

    PubMed

    Faria, Daniel; Schlicker, Andreas; Pesquita, Catia; Bastos, Hugo; Ferreira, António E N; Albrecht, Mario; Falcão, André O

    2012-01-01

    Despite the structure and objectivity provided by the Gene Ontology (GO), the annotation of proteins is a complex task that is subject to errors and inconsistencies. Electronically inferred annotations in particular are widely considered unreliable. However, given that manual curation of all GO annotations is unfeasible, it is imperative to improve the quality of electronically inferred annotations. In this work, we analyze the full GO molecular function annotation of UniProtKB proteins, and discuss some of the issues that affect their quality, focusing particularly on the lack of annotation consistency. Based on our analysis, we estimate that 64% of the UniProtKB proteins are incompletely annotated, and that inconsistent annotations affect 83% of the protein functions and at least 23% of the proteins. Additionally, we present and evaluate a data mining algorithm, based on the association rule learning methodology, for identifying implicit relationships between molecular function terms. The goal of this algorithm is to assist GO curators in updating GO and correcting and preventing inconsistent annotations. Our algorithm predicted 501 relationships with an estimated precision of 94%, whereas the basic association rule learning methodology predicted 12,352 relationships with a precision below 9%.

  14. 7 CFR 1421.107 - Warehouse receipts.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Warehouse receipts. 1421.107 Section 1421.107... § 1421.107 Warehouse receipts. (a) Warehouse receipts tendered to CCC under § 1421.3 for marketing... program documents. (b) Warehouse receipts must be issued in the name of the eligible producer or CCC....

  15. 7 CFR 1427.11 - Warehouse receipts.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Warehouse receipts. 1427.11 Section 1427.11... Deficiency Payments § 1427.11 Warehouse receipts. (a) Producers may obtain loans on eligible cotton represented by warehouse receipts only if the warehouse receipts meet the definition of a warehouse...

  16. Inter-Annotator Reliability of Medical Events, Coreferences and Temporal Relations in Clinical Narratives by Annotators with Varying Levels of Clinical Expertise

    PubMed Central

    Raghavan, Preethi; Fosler-Lussier, Eric; Lai, Albert M.

    2012-01-01

    The manual annotation of clinical narratives is an important step for training and validating the performance of automated systems that utilize these clinical narratives. We build an annotation specification to capture medical events, and coreferences and temporal relations between medical events in clinical text. Unfortunately, the process of clinical data annotation is both time consuming and costly. Many annotation efforts have used physicians to annotate the data. We investigate using annotators that are current students or graduates from diverse clinical backgrounds with varying levels of clinical experience. In spite of this diversity, the annotation agreement across our team of annotators is high; the average inter-annotator kappa statistic for medical events, coreferences, temporal relations, and medical event concept unique identifiers was 0.843, 0.859, 0.833, and 0.806, respectively. We describe methods towards leveraging the annotations to support temporal reasoning with medical events. PMID:23304416

  17. Bacterial genome annotation.

    PubMed

    Beckloff, Nicholas; Starkenburg, Shawn; Freitas, Tracey; Chain, Patrick

    2012-01-01

    Annotation of prokaryotic sequences can be separated into structural and functional annotation. Structural annotation is dependent on algorithmic interrogation of experimental evidence to discover the physical characteristics of a gene. This is done in an effort to construct accurate gene models, so understanding function or evolution of genes among organisms is not impeded. Functional annotation is dependent on sequence similarity to other known genes or proteins in an effort to assess the function of the gene. Combining structural and functional annotation across genomes in a comparative manner promotes higher levels of accurate annotation as well as an advanced understanding of genome evolution. As the availability of bacterial sequences increases and annotation methods improve, the value of comparative annotation will increase.

  18. Marital Biography, Social Security Receipt, and Poverty.

    PubMed

    Lin, I-Fen; Brown, Susan L; Hammersmith, Anna M

    2017-01-01

    Increasingly, older adults are unmarried, which could mean a larger share is at risk of economic disadvantage. Using data from the 2010 Health and Retirement Study, we chart the diverse range of marital biographies, capturing marital sequences and timing, of adults who are age eligible for Social Security and examine three indicators of economic well-being: Social Security receipt, Social Security benefit levels, and poverty status. Partnereds are disproportionately likely to receive Social Security and they enjoy relatively high Social Security benefits and very low poverty levels. Among singles, economic well-being varies by marital biography and gender. Gray divorced and never-married women face considerable economic insecurity. Their Social Security benefits are relatively low, and their poverty rates are quite high (over 25%), indicating Social Security alone is not sufficient to prevent these women from falling into poverty. By comparison, gray widoweds are the most advantaged singles.

  19. Dictionary-driven protein annotation.

    PubMed

    Rigoutsos, Isidore; Huynh, Tien; Floratos, Aris; Parida, Laxmi; Platt, Daniel

    2002-09-01

    Computational methods seeking to automatically determine the properties (functional, structural, physicochemical, etc.) of a protein directly from the sequence have long been the focus of numerous research groups. With the advent of advanced sequencing methods and systems, the number of amino acid sequences that are being deposited in the public databases has been increasing steadily. This has in turn generated a renewed demand for automated approaches that can annotate individual sequences and complete genomes quickly, exhaustively and objectively. In this paper, we present one such approach that is centered around and exploits the Bio-Dictionary, a collection of amino acid patterns that completely covers the natural sequence space and can capture functional and structural signals that have been reused during evolution, within and across protein families. Our annotation approach also makes use of a weighted, position-specific scoring scheme that is unaffected by the over-representation of well-conserved proteins and protein fragments in the databases used. For a given query sequence, the method permits one to determine, in a single pass, the following: local and global similarities between the query and any protein already present in a public database; the likeness of the query to all available archaeal/ bacterial/eukaryotic/viral sequences in the database as a function of amino acid position within the query; the character of secondary structure of the query as a function of amino acid position within the query; the cytoplasmic, transmembrane or extracellular behavior of the query; the nature and position of binding domains, active sites, post-translationally modified sites, signal peptides, etc. In terms of performance, the proposed method is exhaustive, objective and allows for the rapid annotation of individual sequences and full genomes. Annotation examples are presented and discussed in Results, including individual queries and complete genomes that were

  20. 7 CFR 160.83 - Miscellaneous receipts.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... STANDARDS FOR NAVAL STORES Loan and Care of United States Standards § 160.83 Miscellaneous receipts. All..., or as rental for duplicates, shall be paid into the United States Treasury as Miscellaneous Receipts... 7 Agriculture 3 2013-01-01 2013-01-01 false Miscellaneous receipts. 160.83 Section...

  1. CMAS: a rich media annotation system for medical imaging

    NASA Astrophysics Data System (ADS)

    Lin, I.-Jong; Chao, Hui

    2006-03-01

    We have developed the CMAS system (Collaborative Medical Annotation System) so that medical professionals will be able to easily annotate digital medical records that contain medical imaging or procedure videos. The CMAS system enables a non-technical person to annotate a medical image or video with their recorded presence. The CMAS system displays medical images via a projector onto a screen; when a doctor (or patient) physically walks in front of this screen with the medical image and gives his/her opinion while gesturing at the image, the CMAS system intuitively captures this interaction by creating a video annotation with HP's Active Shadows technology. The CMAS system automatically transforms physical interactions, ranging from a laser pointer spot to a doctor's physical presence, into video annotation that then can be overlaid on top of the medical image or seamlessly inserted into the procedure video. Annotated in such a manner, the medical record retains the historical development of the diagnostic medical opinion, explained through presence of doctors and their respective annotations. The CMAS system structures the annotation of digital medical records such that image/video annotations from multiple sources, at different times, and from different locations can be maintained within a historical context and be consistently referenced among multiple annotations.

  2. Annotated Humanities Programs.

    ERIC Educational Resources Information Center

    Adler, Richard R.; Applebee, Arthur

    The humanities programs offered in 1968 by 227 United States secondary schools are listed alphabetically by state, including almost 100 new programs not annotated in the 1967 listing (see TE 000 224). Each annotation presents a brief description of the approach to study used in the particular humanities course (e.g., American Studies, Culture…

  3. Annotation extension through protein family annotation coherence metrics

    PubMed Central

    Bastos, Hugo P.; Clarke, Luka A.; Couto, Francisco M.

    2013-01-01

    Protein functional annotation consists in associating proteins with textual descriptors elucidating their biological roles. The bulk of annotation is done via automated procedures that ultimately rely on annotation transfer. Despite a large number of existing protein annotation procedures the ever growing protein space is never completely annotated. One of the facets of annotation incompleteness derives from annotation uncertainty. Often when protein function cannot be predicted with enough specificity it is instead conservatively annotated with more generic terms. In a scenario of protein families or functionally related (or even dissimilar) sets this leads to a more difficult task of using annotations to compare the extent of functional relatedness among all family or set members. However, we postulate that identifying sub-sets of functionally coherent proteins annotated at a very specific level, can help the annotation extension of other incompletely annotated proteins within the same family or functionally related set. As an example we analyse the status of annotation of a set of CAZy families belonging to the Polysaccharide Lyase class. We show that through the use of visualization methods and semantic similarity based metrics it is possible to identify families and respective annotation terms within them that are suitable for possible annotation extension. Based on our analysis we then propose a semi-automatic methodology leading to the extension of single annotation terms within these partially annotated protein sets or families. PMID:24130572

  4. Discovering gene annotations in biomedical text databases

    PubMed Central

    Cakmak, Ali; Ozsoyoglu, Gultekin

    2008-01-01

    Background Genes and gene products are frequently annotated with Gene Ontology concepts based on the evidence provided in genomics articles. Manually locating and curating information about a genomic entity from the biomedical literature requires vast amounts of human effort. Hence, there is clearly a need forautomated computational tools to annotate the genes and gene products with Gene Ontology concepts by computationally capturing the related knowledge embedded in textual data. Results In this article, we present an automated genomic entity annotation system, GEANN, which extracts information about the characteristics of genes and gene products in article abstracts from PubMed, and translates the discoveredknowledge into Gene Ontology (GO) concepts, a widely-used standardized vocabulary of genomic traits. GEANN utilizes textual "extraction patterns", and a semantic matching framework to locate phrases matching to a pattern and produce Gene Ontology annotations for genes and gene products. In our experiments, GEANN has reached to the precision level of 78% at therecall level of 61%. On a select set of Gene Ontology concepts, GEANN either outperforms or is comparable to two other automated annotation studies. Use of WordNet for semantic pattern matching improves the precision and recall by 24% and 15%, respectively, and the improvement due to semantic pattern matching becomes more apparent as the Gene Ontology terms become more general. Conclusion GEANN is useful for two distinct purposes: (i) automating the annotation of genomic entities with Gene Ontology concepts, and (ii) providing existing annotations with additional "evidence articles" from the literature. The use of textual extraction patterns that are constructed based on the existing annotations achieve high precision. The semantic pattern matching framework provides a more flexible pattern matching scheme with respect to "exactmatching" with the advantage of locating approximate pattern occurrences with

  5. An annotated energy bibliography

    NASA Technical Reports Server (NTRS)

    Blow, S. J.

    1979-01-01

    Comprehensive annotated compilation of books, journals, periodicals, and reports on energy and energy related topics, contains approximately 10,0000 tehcnical and nontechnical references from bibliographic and other sources dated January 1975 through May 1977.

  6. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.

    PubMed

    Haas, Brian J; Delcher, Arthur L; Mount, Stephen M; Wortman, Jennifer R; Smith, Roger K; Hannick, Linda I; Maiti, Rama; Ronning, Catherine M; Rusch, Douglas B; Town, Christopher D; Salzberg, Steven L; White, Owen

    2003-10-01

    The spliced alignment of expressed sequence data to genomic sequence has proven a key tool in the comprehensive annotation of genes in eukaryotic genomes. A novel algorithm was developed to assemble clusters of overlapping transcript alignments (ESTs and full-length cDNAs) into maximal alignment assemblies, thereby comprehensively incorporating all available transcript data and capturing subtle splicing variations. Complete and partial gene structures identified by this method were used to improve The Institute for Genomic Research Arabidopsis genome annotation (TIGR release v.4.0). The alignment assemblies permitted the automated modeling of several novel genes and >1000 alternative splicing variations as well as updates (including UTR annotations) to nearly half of the approximately 27 000 annotated protein coding genes. The algorithm of the Program to Assemble Spliced Alignments (PASA) tool is described, as well as the results of automated updates to Arabidopsis gene annotations.

  7. An Introduction to Genome Annotation.

    PubMed

    Campbell, Michael S; Yandell, Mark

    2015-12-17

    Genome projects have evolved from large international undertakings to tractable endeavors for a single lab. Accurate genome annotation is critical for successful genomic, genetic, and molecular biology experiments. These annotations can be generated using a number of approaches and available software tools. This unit describes methods for genome annotation and a number of software tools commonly used in gene annotation.

  8. Increasing Receipt of Women's Preventive Services

    PubMed Central

    Fox, Jared

    2015-01-01

    Abstract The receipt of clinical preventive services is important for health promotion and prevention of illness, death, and disability for women in the United States. Today, the Affordable Care Act makes a variety of evidence-based preventive services available with no out-of-pocket cost to women with certain health insurance plans. Nevertheless, available service receipt data suggest receipt of the services for all American adults remains suboptimal. This article seeks to raise awareness about the critical gaps in the delivery of preventive services to women and highlight opportunities for women, primary care providers, and public health professionals to increase receipt of clinical preventive services among women. PMID:26447836

  9. Semantic Annotation of Mutable Data

    PubMed Central

    Morris, Robert A.; Dou, Lei; Hanken, James; Kelly, Maureen; Lowery, David B.; Ludäscher, Bertram; Macklin, James A.; Morris, Paul J.

    2013-01-01

    Electronic annotation of scientific data is very similar to annotation of documents. Both types of annotation amplify the original object, add related knowledge to it, and dispute or support assertions in it. In each case, annotation is a framework for discourse about the original object, and, in each case, an annotation needs to clearly identify its scope and its own terminology. However, electronic annotation of data differs from annotation of documents: the content of the annotations, including expectations and supporting evidence, is more often shared among members of networks. Any consequent actions taken by the holders of the annotated data could be shared as well. But even those current annotation systems that admit data as their subject often make it difficult or impossible to annotate at fine-enough granularity to use the results in this way for data quality control. We address these kinds of issues by offering simple extensions to an existing annotation ontology and describe how the results support an interest-based distribution of annotations. We are using the result to design and deploy a platform that supports annotation services overlaid on networks of distributed data, with particular application to data quality control. Our initial instance supports a set of natural science collection metadata services. An important application is the support for data quality control and provision of missing data. A previous proof of concept demonstrated such use based on data annotations modeled with XML-Schema. PMID:24223697

  10. Algal functional annotation tool

    SciTech Connect

    2012-07-12

    Abstract BACKGROUND: Progress in genome sequencing is proceeding at an exponential pace, and several new algal genomes are becoming available every year. One of the challenges facing the community is the association of protein sequences encoded in the genomes with biological function. While most genome assembly projects generate annotations for predicted protein sequences, they are usually limited and integrate functional terms from a limited number of databases. Another challenge is the use of annotations to interpret large lists of 'interesting' genes generated by genome-scale datasets. Previously, these gene lists had to be analyzed across several independent biological databases, often on a gene-by-gene basis. In contrast, several annotation databases, such as DAVID, integrate data from multiple functional databases and reveal underlying biological themes of large gene lists. While several such databases have been constructed for animals, none is currently available for the study of algae. Due to renewed interest in algae as potential sources of biofuels and the emergence of multiple algal genome sequences, a significant need has arisen for such a database to process the growing compendiums of algal genomic data. DESCRIPTION: The Algal Functional Annotation Tool is a web-based comprehensive analysis suite integrating annotation data from several pathway, ontology, and protein family databases. The current version provides annotation for the model alga Chlamydomonas reinhardtii, and in the future will include additional genomes. The site allows users to interpret large gene lists by identifying associated functional terms, and their enrichment. Additionally, expression data for several experimental conditions were compiled and analyzed to provide an expression-based enrichment search. A tool to search for functionally-related genes based on gene expression across these conditions is also provided. Other features include dynamic visualization of genes on KEGG

  11. Human Genome Annotation

    NASA Astrophysics Data System (ADS)

    Gerstein, Mark

    A central problem for 21st century science is annotating the human genome and making this annotation useful for the interpretation of personal genomes. My talk will focus on annotating the 99% of the genome that does not code for canonical genes, concentrating on intergenic features such as structural variants (SVs), pseudogenes (protein fossils), binding sites, and novel transcribed RNAs (ncRNAs). In particular, I will describe how we identify regulatory sites and variable blocks (SVs) based on processing next-generation sequencing experiments. I will further explain how we cluster together groups of sites to create larger annotations. Next, I will discuss a comprehensive pseudogene identification pipeline, which has enabled us to identify >10K pseudogenes in the genome and analyze their distribution with respect to age, protein family, and chromosomal location. Throughout, I will try to introduce some of the computational algorithms and approaches that are required for genome annotation. Much of this work has been carried out in the framework of the ENCODE, modENCODE, and 1000 genomes projects.

  12. Evaluating Computational Gene Ontology Annotations.

    PubMed

    Škunca, Nives; Roberts, Richard J; Steffen, Martin

    2017-01-01

    Two avenues to understanding gene function are complementary and often overlapping: experimental work and computational prediction. While experimental annotation generally produces high-quality annotations, it is low throughput. Conversely, computational annotations have broad coverage, but the quality of annotations may be variable, and therefore evaluating the quality of computational annotations is a critical concern.In this chapter, we provide an overview of strategies to evaluate the quality of computational annotations. First, we discuss why evaluating quality in this setting is not trivial. We highlight the various issues that threaten to bias the evaluation of computational annotations, most of which stem from the incompleteness of biological databases. Second, we discuss solutions that address these issues, for example, targeted selection of new experimental annotations and leveraging the existing experimental annotations.

  13. Re-Annotator: Annotation Pipeline for Microarray Probe Sequences.

    PubMed

    Arloth, Janine; Bader, Daniel M; Röh, Simone; Altmann, Andre

    2015-01-01

    Microarray technologies are established approaches for high throughput gene expression, methylation and genotyping analysis. An accurate mapping of the array probes is essential to generate reliable biological findings. However, manufacturers of the microarray platforms typically provide incomplete and outdated annotation tables, which often rely on older genome and transcriptome versions that differ substantially from up-to-date sequence databases. Here, we present the Re-Annotator, a re-annotation pipeline for microarray probe sequences. It is primarily designed for gene expression microarrays but can also be adapted to other types of microarrays. The Re-Annotator uses a custom-built mRNA reference database to identify the positions of gene expression array probe sequences. We applied Re-Annotator to the Illumina Human-HT12 v4 microarray platform and found that about one quarter (25%) of the probes differed from the manufacturer's annotation. In further computational experiments on experimental gene expression data, we compared Re-Annotator to another probe re-annotation tool, ReMOAT, and found that Re-Annotator provided an improved re-annotation of microarray probes. A thorough re-annotation of probe information is crucial to any microarray analysis. The Re-Annotator pipeline is freely available at http://sourceforge.net/projects/reannotator along with re-annotated files for Illumina microarrays HumanHT-12 v3/v4 and MouseRef-8 v2.

  14. Injectors and Annotations

    NASA Technical Reports Server (NTRS)

    Filman, Robert E.

    2004-01-01

    In a previous paper, we presented the Object Infrastructure Framework. The goal of that system is to simplify the creation of distributed applications. The primary claim of that work is that non-functional 'ilities' could be achieved by controlling and manipulating the communications between components, thereby simplifying the development of distributed systems. A secondary element of that paper is to argue for extending the conventional distributed objects model in two important ways: 1) The ability to insert injectors (filters, wrappers) into the communication path between components; 2) The ability to annotate communications with additional information, and to propagate these annotations through an application. Here we express the descriptions of that paper.

  15. Mulligan Concept manual therapy: standardizing annotation.

    PubMed

    McDowell, Jillian Marie; Johnson, Gillian Margaret; Hetherington, Barbara Helen

    2014-10-01

    Quality technique documentation is integral to the practice of manual therapy, ensuring uniform application and reproducibility of treatment. Manual therapy techniques are described by annotations utilizing a range of acronyms, abbreviations and universal terminology based on biomechanical and anatomical concepts. The various combinations of therapist and patient generated forces utilized in a variety of weight-bearing positions, which are synonymous with Mulligan Concept, challenge practitioners existing annotational skills. An annotation framework with recording rules adapted to the Mulligan Concept is proposed in which the abbreviations incorporate established manual therapy tenets and are detailed in the following sequence of; starting position, side, joint/s, method of application, glide/s, Mulligan technique, movement (or function), whether an assistant is used, overpressure (and by whom) and numbers of repetitions or time and sets. Therapist or patient application of overpressure and utilization of treatment belts or manual techniques must be recorded to capture the complete description. The adoption of the Mulligan Concept annotation framework in this way for documentation purposes will provide uniformity and clarity of information transfer for the future purposes of teaching, clinical practice and audit for its practitioners.

  16. Modeling loosely annotated images using both given and imagined annotations

    NASA Astrophysics Data System (ADS)

    Tang, Hong; Boujemaa, Nozha; Chen, Yunhao; Deng, Lei

    2011-12-01

    In this paper, we present an approach to learn latent semantic analysis models from loosely annotated images for automatic image annotation and indexing. The given annotation in training images is loose due to: 1. ambiguous correspondences between visual features and annotated keywords; 2. incomplete lists of annotated keywords. The second reason motivates us to enrich the incomplete annotation in a simple way before learning a topic model. In particular, some ``imagined'' keywords are poured into the incomplete annotation through measuring similarity between keywords in terms of their co-occurrence. Then, both given and imagined annotations are employed to learn probabilistic topic models for automatically annotating new images. We conduct experiments on two image databases (i.e., Corel and ESP) coupled with their loose annotations, and compare the proposed method with state-of-the-art discrete annotation methods. The proposed method improves word-driven probability latent semantic analysis (PLSA-words) up to a comparable performance with the best discrete annotation method, while a merit of PLSA-words is still kept, i.e., a wider semantic range.

  17. Annotated Bibliography. First Edition.

    ERIC Educational Resources Information Center

    Haring, Norris G.

    An annotated bibliography which presents approximately 300 references from 1951 to 1973 on the education of severely/profoundly handicapped persons. Citations are grouped alphabetically by author's name within the following categories: characteristics and treatment, gross motor development, sensory and motor development, physical therapy for the…

  18. Ghostwriting: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Simmons, Donald B.

    Drawn from communication journals, historical and news magazines, business and industrial magazines, political science and world affairs journals, general interest periodicals, and literary and political review magazines, the approximately 90 entries in this annotated bibliography discuss ghostwriting as practiced through the ages and reveal the…

  19. Automated Microbial Genome Annotation

    SciTech Connect

    Land, Miriam

    2009-05-29

    Miriam Land of the DOE Joint Genome Institute at Oak Ridge National Laboratory gives a talk on the current state and future challenges of moving toward automated microbial genome annotation at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM

  20. Cheating. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Wildemuth, Barbara M., Comp.

    This 89-item, annotated bibliography was compiled to provide access to research and discussions of cheating and, specifically, cheating on tests. It is not limited to any educational level, nor is it confined to any specific curriculum area. Two data bases were searched by computer, and a library search was conducted. A computer search of the…

  1. 7 CFR 735.302 - Paper warehouse receipts.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 7 2010-01-01 2010-01-01 false Paper warehouse receipts. 735.302 Section 735.302... AGRICULTURE REGULATIONS FOR WAREHOUSES REGULATIONS FOR THE UNITED STATES WAREHOUSE ACT Warehouse Receipts § 735.302 Paper warehouse receipts. Paper warehouse receipts must be issued as follows: (a)...

  2. 37 CFR 1.6 - Receipt of correspondence.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 37 Patents, Trademarks, and Copyrights 1 2013-07-01 2013-07-01 false Receipt of correspondence. 1... Correspondence § 1.6 Receipt of correspondence. (a) Date of receipt and Express Mail date of deposit. Correspondence received in the Patent and Trademark Office is stamped with the date of receipt except as...

  3. 37 CFR 1.6 - Receipt of correspondence.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 37 Patents, Trademarks, and Copyrights 1 2011-07-01 2011-07-01 false Receipt of correspondence. 1... Correspondence § 1.6 Receipt of correspondence. (a) Date of receipt and Express Mail date of deposit. Correspondence received in the Patent and Trademark Office is stamped with the date of receipt except as...

  4. SNMFCA: supervised NMF-based image classification and annotation.

    PubMed

    Jing, Liping; Zhang, Chao; Ng, Michael K

    2012-11-01

    In this paper, we propose a novel supervised nonnegative matrix factorization-based framework for both image classification and annotation. The framework consists of two phases: training and prediction. In the training phase, two supervised nonnegative matrix factorizations for image descriptors and annotation terms are combined to identify the latent image bases, and to represent the training images in the bases space. These latent bases can capture the representation of the images in terms of both descriptors and annotation terms. Based on the new representation of training images, classifiers can be learnt and built. In the prediction phase, a test image is first represented by the latent bases via solving a linear least squares problem, and then its class label and annotation can be predicted via the trained classifiers and the proposed annotation mapping model. In the algorithm, we develop a three-block proximal alternating nonnegative least squares algorithm to determine the latent image bases, and show its convergent property. Extensive experiments on real-world image data sets suggest that the proposed framework is able to predict the label and annotation for testing images successfully. Experimental results have also shown that our algorithm is computationally efficient and effective for image classification and annotation.

  5. The caBIG annotation and image Markup project.

    PubMed

    Channin, David S; Mongkolwat, Pattanasak; Kleper, Vladimir; Sepukar, Kastubh; Rubin, Daniel L

    2010-04-01

    Image annotation and markup are at the core of medical interpretation in both the clinical and the research setting. Digital medical images are managed with the DICOM standard format. While DICOM contains a large amount of meta-data about whom, where, and how the image was acquired, DICOM says little about the content or meaning of the pixel data. An image annotation is the explanatory or descriptive information about the pixel data of an image that is generated by a human or machine observer. An image markup is the graphical symbols placed over the image to depict an annotation. While DICOM is the standard for medical image acquisition, manipulation, transmission, storage, and display, there are no standards for image annotation and markup. Many systems expect annotation to be reported verbally, while markups are stored in graphical overlays or proprietary formats. This makes it difficult to extract and compute with both of them. The goal of the Annotation and Image Markup (AIM) project is to develop a mechanism, for modeling, capturing, and serializing image annotation and markup data that can be adopted as a standard by the medical imaging community. The AIM project produces both human- and machine-readable artifacts. This paper describes the AIM information model, schemas, software libraries, and tools so as to prepare researchers and developers for their use of AIM.

  6. Apollo: a sequence annotation editor.

    PubMed

    Lewis, S E; Searle, S M J; Harris, N; Gibson, M; Lyer, V; Richter, J; Wiel, C; Bayraktaroglu, L; Birney, E; Crosby, M A; Kaminker, J S; Matthews, B B; Prochnik, S E; Smithy, C D; Tupy, J L; Rubin, G M; Misra, S; Mungall, C J; Clamp, M E

    2002-01-01

    The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an interactive tool to allow biological experts to refine these approximations by viewing and independently evaluating the data supporting each annotation. Apollo was developed to meet this need, enabling curators to inspect genome annotations closely and edit them. FlyBase biologists successfully used Apollo to annotate the Drosophila melanogaster genome and it is increasingly being used as a starting point for the development of customized annotation editing tools for other genome projects.

  7. Spent fuel receipt scenarios study

    SciTech Connect

    Ballou, L.B.; Montan, D.N.; Revelli, M.A.

    1990-09-01

    This study reports on the results of an assignment from the DOE Office of Civilian Radioactive Waste Management to evaluate of the effects of different scenarios for receipt of spent fuel on the potential performance of the waste packages in the proposed Yucca Mountain high-level waste repository. The initial evaluations were performed and an interim letter report was prepared during the fall of 1988. Subsequently, the scope of work was expanded and additional analyses were conducted in 1989. This report combines the results of the two phases of the activity. This study is a part of a broader effort to investigate the options available to the DOE and the nuclear utilities for selection of spent fuel for acceptance into the Federal Waste Management System for disposal. Each major element of the system has evaluated the effects of various options on its own operations, with the objective of providing the basis for performing system-wide trade-offs and determining an optimum acceptance scenario. Therefore, this study considers different scenarios for receipt of spent fuel by the repository only from the narrow perspective of their effect on the very-near-field temperatures in the repository following permanent closure. This report is organized into three main sections. The balance of this section is devoted to a statement of the study objective, a summary of the assumptions. The second section of the report contains a discussion of the major elements of the study. The third section summarizes the results of the study and draws some conclusions from them. The appendices include copies of the waste acceptance schedule and the existing and projected spent fuel inventory that were used in the study. 10 refs., 27 figs.

  8. 7 CFR 1427.11 - Warehouse receipts.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ..., standard, gin standard, standard density (short), gin universal, universal density (short), or warehouse universal density. The receipt must show if the compression charge has been paid, or if the warehouse...

  9. Gene Ontology annotations: what they mean and where they come from

    PubMed Central

    Hill, David P; Smith, Barry; McAndrews-Hill, Monica S; Blake, Judith A

    2008-01-01

    To address the challenges of information integration and retrieval, the computational genomics community increasingly has come to rely on the methodology of creating annotations of scientific literature using terms from controlled structured vocabularies such as the Gene Ontology (GO). Here we address the question of what such annotations signify and of how they are created by working biologists. Our goal is to promote a better understanding of how the results of experiments are captured in annotations, in the hope that this will lead both to better representations of biological reality through annotation and ontology development and to more informed use of GO resources by experimental scientists. PMID:18460184

  10. Nonlinear Deep Kernel Learning for Image Annotation.

    PubMed

    Jiu, Mingyuan; Sahbi, Hichem

    2017-02-08

    Multiple kernel learning (MKL) is a widely used technique for kernel design. Its principle consists in learning, for a given support vector classifier, the most suitable convex (or sparse) linear combination of standard elementary kernels. However, these combinations are shallow and often powerless to capture the actual similarity between highly semantic data, especially for challenging classification tasks such as image annotation. In this paper, we redefine multiple kernels using deep multi-layer networks. In this new contribution, a deep multiple kernel is recursively defined as a multi-layered combination of nonlinear activation functions, each one involves a combination of several elementary or intermediate kernels, and results into a positive semi-definite deep kernel. We propose four different frameworks in order to learn the weights of these networks: supervised, unsupervised, kernel-based semisupervised and Laplacian-based semi-supervised. When plugged into support vector machines (SVMs), the resulting deep kernel networks show clear gain, compared to several shallow kernels for the task of image annotation. Extensive experiments and analysis on the challenging ImageCLEF photo annotation benchmark, the COREL5k database and the Banana dataset validate the effectiveness of the proposed method.

  11. Assessment of community-submitted ontology annotations from a novel database-journal partnership.

    PubMed

    Berardini, Tanya Z; Li, Donghui; Muller, Robert; Chetty, Raymond; Ploetz, Larry; Singh, Shanker; Wensel, April; Huala, Eva

    2012-01-01

    As the scientific literature grows, leading to an increasing volume of published experimental data, so does the need to access and analyze this data using computational tools. The most commonly used method to convert published experimental data on gene function into controlled vocabulary annotations relies on a professional curator, employed by a model organism database or a more general resource such as UniProt, to read published articles and compose annotation statements based on the articles' contents. A more cost-effective and scalable approach capable of capturing gene function data across the whole range of biological research organisms in computable form is urgently needed. We have analyzed a set of ontology annotations generated through collaborations between the Arabidopsis Information Resource and several plant science journals. Analysis of the submissions entered using the online submission tool shows that most community annotations were well supported and the ontology terms chosen were at an appropriate level of specificity. Of the 503 individual annotations that were submitted, 97% were approved and community submissions captured 72% of all possible annotations. This new method for capturing experimental results in a computable form provides a cost-effective way to greatly increase the available body of annotations without sacrificing annotation quality. Database URL: www.arabidopsis.org.

  12. RATT: Rapid Annotation Transfer Tool

    PubMed Central

    Otto, Thomas D.; Dillon, Gary P.; Degrave, Wim S.; Berriman, Matthew

    2011-01-01

    Second-generation sequencing technologies have made large-scale sequencing projects commonplace. However, making use of these datasets often requires gene function to be ascribed genome wide. Although tool development has kept pace with the changes in sequence production, for tasks such as mapping, de novo assembly or visualization, genome annotation remains a challenge. We have developed a method to rapidly provide accurate annotation for new genomes using previously annotated genomes as a reference. The method, implemented in a tool called RATT (Rapid Annotation Transfer Tool), transfers annotations from a high-quality reference to a new genome on the basis of conserved synteny. We demonstrate that a Mycobacterium tuberculosis genome or a single 2.5 Mb chromosome from a malaria parasite can be annotated in less than five minutes with only modest computational resources. RATT is available at http://ratt.sourceforge.net. PMID:21306991

  13. Multiple ontologies in action: composite annotations for biosimulation models.

    PubMed

    Gennari, John H; Neal, Maxwell L; Galdzicki, Michal; Cook, Daniel L

    2011-02-01

    There now exists a rich set of ontologies that provide detailed semantics for biological entities of interest. However, there is not (nor should there be) a single source ontology that provides all the necessary semantics for describing biological phenomena. In the domain of physiological biosimulation models, researchers use annotations to convey semantics, and many of these annotations require the use of multiple reference ontologies. Therefore, we have developed the idea of composite annotations that access multiple ontologies to capture the physics-based meaning of model variables. These composite annotations provide the semantic expressivity needed to disambiguate the often-complex features of biosimulation models, and can be used to assist with model merging and interoperability. In this paper, we demonstrate the utility of composite annotations for model merging by describing their use within SemGen, our semantics-based model composition software. More broadly, if orthogonal reference ontologies are to meet their full potential, users need tools and methods to connect and link these ontologies. Our composite annotations and the SemGen tool provide one mechanism for leveraging multiple reference ontologies.

  14. The Ensembl gene annotation system

    PubMed Central

    Aken, Bronwen L.; Ayling, Sarah; Barrell, Daniel; Clarke, Laura; Curwen, Valery; Fairley, Susan; Fernandez Banet, Julio; Billis, Konstantinos; García Girón, Carlos; Hourlier, Thibaut; Howe, Kevin; Kähäri, Andreas; Kokocinski, Felix; Martin, Fergal J.; Murphy, Daniel N.; Nag, Rishi; Ruffier, Magali; Schuster, Michael; Tang, Y. Amy; Vogel, Jan-Hinnerk; White, Simon; Zadissa, Amonida; Flicek, Paul

    2016-01-01

    The Ensembl gene annotation system has been used to annotate over 70 different vertebrate species across a wide range of genome projects. Furthermore, it generates the automatic alignment-based annotation for the human and mouse GENCODE gene sets. The system is based on the alignment of biological sequences, including cDNAs, proteins and RNA-seq reads, to the target genome in order to construct candidate transcript models. Careful assessment and filtering of these candidate transcripts ultimately leads to the final gene set, which is made available on the Ensembl website. Here, we describe the annotation process in detail. Database URL: http://www.ensembl.org/index.html PMID:27337980

  15. Model and Interoperability using Meta Data Annotations

    NASA Astrophysics Data System (ADS)

    David, O.

    2011-12-01

    Software frameworks and architectures are in need for meta data to efficiently support model integration. Modelers have to know the context of a model, often stepping into modeling semantics and auxiliary information usually not provided in a concise structure and universal format, consumable by a range of (modeling) tools. XML often seems the obvious solution for capturing meta data, but its wide adoption to facilitate model interoperability is limited by XML schema fragmentation, complexity, and verbosity outside of a data-automation process. Ontologies seem to overcome those shortcomings, however the practical significance of their use remains to be demonstrated. OMS version 3 took a different approach for meta data representation. The fundamental building block of a modular model in OMS is a software component representing a single physical process, calibration method, or data access approach. Here, programing language features known as Annotations or Attributes were adopted. Within other (non-modeling) frameworks it has been observed that annotations lead to cleaner and leaner application code. Framework-supported model integration, traditionally accomplished using Application Programming Interfaces (API) calls is now achieved using descriptive code annotations. Fully annotated components for various hydrological and Ag-system models now provide information directly for (i) model assembly and building, (ii) data flow analysis for implicit multi-threading or visualization, (iii) automated and comprehensive model documentation of component dependencies, physical data properties, (iv) automated model and component testing, calibration, and optimization, and (v) automated audit-traceability to account for all model resources leading to a particular simulation result. Such a non-invasive methodology leads to models and modeling components with only minimal dependencies on the modeling framework but a strong reference to its originating code. Since models and

  16. Phylogenetic molecular function annotation

    NASA Astrophysics Data System (ADS)

    Engelhardt, Barbara E.; Jordan, Michael I.; Repo, Susanna T.; Brenner, Steven E.

    2009-07-01

    It is now easier to discover thousands of protein sequences in a new microbial genome than it is to biochemically characterize the specific activity of a single protein of unknown function. The molecular functions of protein sequences have typically been predicted using homology-based computational methods, which rely on the principle that homologous proteins share a similar function. However, some protein families include groups of proteins with different molecular functions. A phylogenetic approach for predicting molecular function (sometimes called "phylogenomics") is an effective means to predict protein molecular function. These methods incorporate functional evidence from all members of a family that have functional characterizations using the evolutionary history of the protein family to make robust predictions for the uncharacterized proteins. However, they are often difficult to apply on a genome-wide scale because of the time-consuming step of reconstructing the phylogenies of each protein to be annotated. Our automated approach for function annotation using phylogeny, the SIFTER (Statistical Inference of Function Through Evolutionary Relationships) methodology, uses a statistical graphical model to compute the probabilities of molecular functions for unannotated proteins. Our benchmark tests showed that SIFTER provides accurate functional predictions on various protein families, outperforming other available methods.

  17. Phylogenetic molecular function annotation

    PubMed Central

    Engelhardt, Barbara E; Jordan, Michael I; Repo, Susanna T; Brenner, Steven E

    2010-01-01

    It is now easier to discover thousands of protein sequences in a new microbial genome than it is to biochemically characterize the specific activity of a single protein of unknown function. The molecular functions of protein sequences have typically been predicted using homology-based computational methods, which rely on the principle that homologous proteins share a similar function. However, some protein families include groups of proteins with different molecular functions. A phylogenetic approach for predicting molecular function (sometimes called “phylogenomics”) is an effective means to predict protein molecular function. These methods incorporate functional evidence from all members of a family that have functional characterizations using the evolutionary history of the protein family to make robust predictions for the uncharacterized proteins. However, they are often difficult to apply on a genome-wide scale because of the time-consuming step of reconstructing the phylogenies of each protein to be annotated. Our automated approach for function annotation using phylogeny, the SIFTER (Statistical Inference of Function Through Evolutionary Relationships) methodology, uses a statistical graphical model to compute the probabilities of molecular functions for unannotated proteins. Our benchmark tests showed that SIFTER provides accurate functional predictions on various protein families, outperforming other available methods. PMID:20664722

  18. 19 CFR 162.15 - Receipt for seized property.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... TREASURY (CONTINUED) INSPECTION, SEARCH, AND SEIZURE Search Warrants § 162.15 Receipt for seized property. A receipt for property seized under a search warrant shall be left with the person in charge or... place on the premises searched....

  19. 19 CFR 162.15 - Receipt for seized property.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... TREASURY (CONTINUED) INSPECTION, SEARCH, AND SEIZURE Search Warrants § 162.15 Receipt for seized property. A receipt for property seized under a search warrant shall be left with the person in charge or... place on the premises searched....

  20. An Annotated Bibliography on Children.

    ERIC Educational Resources Information Center

    Bureau of Libraries and Educational Technology (DHEW/OE), Washington, DC.

    This annotated bibliography is a highly selective list of materials published in the last five years on the major problems, trends, methodologies and achievements in the field of child development. It contains annotated references to approximately 500 books, periodicals, technical reports, government documents, legislative materials, professional…

  1. Morphosyntactic annotation of CHILDES transcripts*

    PubMed Central

    SAGAE, KENJI; DAVIS, ERIC; LAVIE, ALON; MACWHINNEY, BRIAN; WINTNER, SHULY

    2014-01-01

    Corpora of child language are essential for research in child language acquisition and psycholinguistics. Linguistic annotation of the corpora provides researchers with better means for exploring the development of grammatical constructions and their usage. We describe a project whose goal is to annotate the English section of the CHILDES database with grammatical relations in the form of labeled dependency structures. We have produced a corpus of over 18,800 utterances (approximately 65,000 words) with manually curated gold-standard grammatical relation annotations. Using this corpus, we have developed a highly accurate data-driven parser for the English CHILDES data, which we used to automatically annotate the remainder of the English section of CHILDES. We have also extended the parser to Spanish, and are currently working on supporting more languages. The parser and the manually and automatically annotated data are freely available for research purposes. PMID:20334720

  2. 7 CFR 735.302 - Paper warehouse receipts.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 7 2011-01-01 2011-01-01 false Paper warehouse receipts. 735.302 Section 735.302... § 735.302 Paper warehouse receipts. Paper warehouse receipts must be issued as follows: (a) On distinctive paper specified by DACO; (b) Printed by a printer authorized by DACO; and (c) Issued,...

  3. 27 CFR 13.75 - Evidence of receipt by TTB.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2012-04-01 2012-04-01 false Evidence of receipt by TTB. 13.75 Section 13.75 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU... there is a time limit on TTB action that runs from TTB's receipt of a document, the date of receipt...

  4. 7 CFR 735.302 - Paper warehouse receipts.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 7 2012-01-01 2012-01-01 false Paper warehouse receipts. 735.302 Section 735.302... § 735.302 Paper warehouse receipts. Paper warehouse receipts must be issued as follows: (a) On distinctive paper specified by DACO; (b) Printed by a printer authorized by DACO; and (c) Issued,...

  5. 7 CFR 735.302 - Paper warehouse receipts.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 7 2013-01-01 2013-01-01 false Paper warehouse receipts. 735.302 Section 735.302... § 735.302 Paper warehouse receipts. Paper warehouse receipts must be issued as follows: (a) On distinctive paper specified by DACO; (b) Printed by a printer authorized by DACO; and (c) Issued,...

  6. 27 CFR 28.251 - Railway express receipts.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2014-04-01 2014-04-01 false Railway express receipts... § 28.251 Railway express receipts. Where the exportation is to a contiguous foreign country and the shipment is by railway express, a receipt issued by the railway express agency may be accepted in lieu...

  7. 27 CFR 28.251 - Railway express receipts.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2012-04-01 2012-04-01 false Railway express receipts... § 28.251 Railway express receipts. Where the exportation is to a contiguous foreign country and the shipment is by railway express, a receipt issued by the railway express agency may be accepted in lieu...

  8. 27 CFR 28.251 - Railway express receipts.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2013-04-01 2013-04-01 false Railway express receipts... § 28.251 Railway express receipts. Where the exportation is to a contiguous foreign country and the shipment is by railway express, a receipt issued by the railway express agency may be accepted in lieu...

  9. 27 CFR 28.251 - Railway express receipts.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2011-04-01 2011-04-01 false Railway express receipts... § 28.251 Railway express receipts. Where the exportation is to a contiguous foreign country and the shipment is by railway express, a receipt issued by the railway express agency may be accepted in lieu...

  10. 27 CFR 28.251 - Railway express receipts.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Railway express receipts... § 28.251 Railway express receipts. Where the exportation is to a contiguous foreign country and the shipment is by railway express, a receipt issued by the railway express agency may be accepted in lieu...

  11. 27 CFR 28.290 - Receipt in foreign trade zone.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Receipt in foreign trade zone. 28.290 Section 28.290 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE... in Foreign-Trade Zone § 28.290 Receipt in foreign trade zone. On receipt at the zone, the...

  12. 27 CFR 70.64 - Receipt for taxes.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 2 2012-04-01 2011-04-01 true Receipt for taxes. 70.64 Section 70.64 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT... Excise and Special (Occupational) Tax Receipt of Payment § 70.64 Receipt for taxes. The appropriate...

  13. 27 CFR 28.286 - Receipt in customs bonded warehouse.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Receipt in customs bonded... in Customs Bonded Warehouse § 28.286 Receipt in customs bonded warehouse. On receipt of the distilled spirits or wine and the related TTB Form 5100.11 or 5110.30 as the case may be, the customs officer...

  14. 27 CFR 27.31 - Warehouse receipts covering distilled spirits.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Warehouse receipts... BEER Dealer Registration and Recordkeeping § 27.31 Warehouse receipts covering distilled spirits. The sale of warehouse receipts for distilled spirits is equivalent to the sale of distilled...

  15. 7 CFR 735.303 - Electronic warehouse receipts.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 7 2010-01-01 2010-01-01 false Electronic warehouse receipts. 735.303 Section 735.303... AGRICULTURE REGULATIONS FOR WAREHOUSES REGULATIONS FOR THE UNITED STATES WAREHOUSE ACT Warehouse Receipts § 735.303 Electronic warehouse receipts. (a) Warehouse operators issuing EWR under the Act may issue...

  16. 27 CFR 31.47 - Warehouse receipts covering spirits.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Warehouse receipts... Part Certain Organizations, Agencies, and Persons § 31.47 Warehouse receipts covering spirits. The sale of warehouse receipts for distilled spirits is equivalent to the sale of distilled...

  17. 27 CFR 26.211 - Warehouse receipts covering distilled spirits.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Warehouse receipts... and Recordkeeping § 26.211 Warehouse receipts covering distilled spirits. The sale of warehouse..., warehouse receipts for distilled spirits stored in warehouses, or elsewhere, must register and keep...

  18. 27 CFR 26.45 - Warehouse receipts covering distilled spirits.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Warehouse receipts... Recordkeeping § 26.45 Warehouse receipts covering distilled spirits. The sale of warehouse receipts for... distilled spirits into the United States from Puerto Rico who sells, or offers for sale, warehouse...

  19. 26 CFR 1.993-6 - Definition of gross receipts.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... (CONTINUED) INCOME TAXES Domestic International Sales Corporations § 1.993-6 Definition of gross receipts. (a) General rule. Under section 993(f), for purposes of sections 991 through 996, the gross receipts of a... 26 Internal Revenue 10 2010-04-01 2010-04-01 false Definition of gross receipts. 1.993-6 Section...

  20. 27 CFR 28.285 - Receipt in manufacturing bonded warehouse.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2012-04-01 2012-04-01 false Receipt in manufacturing bonded warehouse. 28.285 Section 28.285 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX... Export Receipt in Manufacturing Bonded Warehouse § 28.285 Receipt in manufacturing bonded warehouse....

  1. 27 CFR 28.285 - Receipt in manufacturing bonded warehouse.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Receipt in manufacturing bonded warehouse. 28.285 Section 28.285 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX... Export Receipt in Manufacturing Bonded Warehouse § 28.285 Receipt in manufacturing bonded warehouse....

  2. 27 CFR 28.285 - Receipt in manufacturing bonded warehouse.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2014-04-01 2014-04-01 false Receipt in manufacturing bonded warehouse. 28.285 Section 28.285 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX... Export Receipt in Manufacturing Bonded Warehouse § 28.285 Receipt in manufacturing bonded warehouse....

  3. 27 CFR 28.285 - Receipt in manufacturing bonded warehouse.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2011-04-01 2011-04-01 false Receipt in manufacturing bonded warehouse. 28.285 Section 28.285 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX... Export Receipt in Manufacturing Bonded Warehouse § 28.285 Receipt in manufacturing bonded warehouse....

  4. 27 CFR 28.285 - Receipt in manufacturing bonded warehouse.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2013-04-01 2013-04-01 false Receipt in manufacturing bonded warehouse. 28.285 Section 28.285 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX... Export Receipt in Manufacturing Bonded Warehouse § 28.285 Receipt in manufacturing bonded warehouse....

  5. 10 CFR 95.41 - External receipt and dispatch records.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 10 Energy 2 2012-01-01 2012-01-01 false External receipt and dispatch records. 95.41 Section 95.41... SECURITY INFORMATION AND RESTRICTED DATA Control of Information § 95.41 External receipt and dispatch... maintain a record that reflects: (a) The date of the material; (b) The date of receipt or dispatch; (c)...

  6. 10 CFR 95.41 - External receipt and dispatch records.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 10 Energy 2 2014-01-01 2014-01-01 false External receipt and dispatch records. 95.41 Section 95.41... SECURITY INFORMATION AND RESTRICTED DATA Control of Information § 95.41 External receipt and dispatch... maintain a record that reflects: (a) The date of the material; (b) The date of receipt or dispatch; (c)...

  7. 10 CFR 95.41 - External receipt and dispatch records.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 10 Energy 2 2010-01-01 2010-01-01 false External receipt and dispatch records. 95.41 Section 95.41... SECURITY INFORMATION AND RESTRICTED DATA Control of Information § 95.41 External receipt and dispatch... maintain a record that reflects: (a) The date of the material; (b) The date of receipt or dispatch; (c)...

  8. 10 CFR 95.41 - External receipt and dispatch records.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 10 Energy 2 2013-01-01 2013-01-01 false External receipt and dispatch records. 95.41 Section 95.41... SECURITY INFORMATION AND RESTRICTED DATA Control of Information § 95.41 External receipt and dispatch... maintain a record that reflects: (a) The date of the material; (b) The date of receipt or dispatch; (c)...

  9. 10 CFR 95.41 - External receipt and dispatch records.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 10 Energy 2 2011-01-01 2011-01-01 false External receipt and dispatch records. 95.41 Section 95.41... SECURITY INFORMATION AND RESTRICTED DATA Control of Information § 95.41 External receipt and dispatch... maintain a record that reflects: (a) The date of the material; (b) The date of receipt or dispatch; (c)...

  10. Semantic annotation for live and posterity logging of video documents

    NASA Astrophysics Data System (ADS)

    Bertini, Marco; Del Bimbo, Alberto; Nunziati, W.

    2003-06-01

    Broadcasters usually envision two basic applications for video databases: Live Logging and Posterity Logging. The former aims at providing effective annotation of video in quasi-real time and supports extraction of meaningful clips from the live stream; it is usually performed by assistant producers working at the same location of the event. The latter provides annotation for later reuse of video material and is the prerequisite for retrieval by content from video digital libraries; it is performed by trained librarians. Both require that annotation is performed, at a great extent, automatically. Video information structure must encompass both low-intermediate level video organization and event relationships that define specific highlights and situations. Analysis of the visual data of the video stream permits to extract hints, identify events and detect highlights. All of this must be supported by a-priori knowledge of the video domain and effective reasoning engines capable to capture the inherent semantics of the visual events.

  11. Incorporating Feature-Based Annotations into Automatically Generated Knowledge Representations

    NASA Astrophysics Data System (ADS)

    Lumb, L. I.; Lederman, J. I.; Aldridge, K. D.

    2006-12-01

    Earth Science Markup Language (ESML) is efficient and effective in representing scientific data in an XML- based formalism. However, features of the data being represented are not accounted for in ESML. Such features might derive from events (e.g., a gap in data collection due to instrument servicing), identifications (e.g., a scientifically interesting area/volume in an image), or some other source. In order to account for features in an ESML context, we consider them from the perspective of annotation, i.e., the addition of information to existing documents without changing the originals. Although it is possible to extend ESML to incorporate feature-based annotations internally (e.g., by extending the XML schema for ESML), there are a number of complicating factors that we identify. Rather than pursuing the ESML-extension approach, we focus on an external representation for feature-based annotations via XML Pointer Language (XPointer). In previous work (Lumb &Aldridge, HPCS 2006, IEEE, doi:10.1109/HPCS.2006.26), we have shown that it is possible to extract relationships from ESML-based representations, and capture the results in the Resource Description Format (RDF). Thus we explore and report on this same requirement for XPointer-based annotations of ESML representations. As in our past efforts, the Global Geodynamics Project (GGP) allows us to illustrate with a real-world example this approach for introducing annotations into automatically generated knowledge representations.

  12. Semantic Annotation of Clinical Events for Generating a Problem List

    PubMed Central

    Mowery, Danielle L.; Jordan, Pamela; Wiebe, Janyce; Harkema, Henk; Dowling, John; Chapman, Wendy W.

    2013-01-01

    We present a pilot study of an annotation schema representing problems and their attributes, along with their relationship to temporal modifiers. We evaluated the ability for humans to annotate clinical reports using the schema and assessed the contribution of semantic annotations in determining the status of a problem mention as active, inactive, proposed, resolved, negated, or other. Our hypothesis is that the schema captures semantic information useful for generating an accurate problem list. Clinical named entities such as reference events, time points, time durations, aspectual phase, ordering words and their relationships including modifications and ordering relations can be annotated by humans with low to moderate recall. Once identified, most attributes can be annotated with low to moderate agreement. Some attributes – Experiencer, Existence, and Certainty - are more informative than other attributes – Intermittency and Generalized/Conditional - for predicting a problem mention’s status. Support vector machine outperformed Naïve Bayes and Decision Tree for predicting a problem’s status. PMID:24551392

  13. Receipts. Agricultural Record Keeping. Supplementary Units.

    ERIC Educational Resources Information Center

    Missouri Univ., Columbia. Instructional Materials Lab.

    Eight supplementary units are included in these instructional materials for agricultural recordkeeping: (1) receipts; (2) expenditures; (3) cash flow; (4) inventory; (5) financial statement; (6) business agreements; (7) ownership business agreements; and (8) placement training agreements. Each unit contains an introduction, lesson objectives, and…

  14. 27 CFR 20.143 - Receipt.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Receipt. 20.143 Section 20.143 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS DISTRIBUTION AND USE OF DENATURED ALCOHOL AND RUM Sale and Use of Completely...

  15. Towards Automated Annotation of Benthic Survey Images: Variability of Human Experts and Operational Modes of Automation

    PubMed Central

    Beijbom, Oscar; Edmunds, Peter J.; Roelfsema, Chris; Smith, Jennifer; Kline, David I.; Neal, Benjamin P.; Dunlap, Matthew J.; Moriarty, Vincent; Fan, Tung-Yung; Tan, Chih-Jui; Chan, Stephen; Treibitz, Tali; Gamst, Anthony; Mitchell, B. Greg; Kriegman, David

    2015-01-01

    Global climate change and other anthropogenic stressors have heightened the need to rapidly characterize ecological changes in marine benthic communities across large scales. Digital photography enables rapid collection of survey images to meet this need, but the subsequent image annotation is typically a time consuming, manual task. We investigated the feasibility of using automated point-annotation to expedite cover estimation of the 17 dominant benthic categories from survey-images captured at four Pacific coral reefs. Inter- and intra- annotator variability among six human experts was quantified and compared to semi- and fully- automated annotation methods, which are made available at coralnet.ucsd.edu. Our results indicate high expert agreement for identification of coral genera, but lower agreement for algal functional groups, in particular between turf algae and crustose coralline algae. This indicates the need for unequivocal definitions of algal groups, careful training of multiple annotators, and enhanced imaging technology. Semi-automated annotation, where 50% of the annotation decisions were performed automatically, yielded cover estimate errors comparable to those of the human experts. Furthermore, fully-automated annotation yielded rapid, unbiased cover estimates but with increased variance. These results show that automated annotation can increase spatial coverage and decrease time and financial outlay for image-based reef surveys. PMID:26154157

  16. Enriching a biomedical event corpus with meta-knowledge annotation

    PubMed Central

    2011-01-01

    Background Biomedical papers contain rich information about entities, facts and events of biological relevance. To discover these automatically, we use text mining techniques, which rely on annotated corpora for training. In order to extract protein-protein interactions, genotype-phenotype/gene-disease associations, etc., we rely on event corpora that are annotated with classified, structured representations of important facts and findings contained within text. These provide an important resource for the training of domain-specific information extraction (IE) systems, to facilitate semantic-based searching of documents. Correct interpretation of these events is not possible without additional information, e.g., does an event describe a fact, a hypothesis, an experimental result or an analysis of results? How confident is the author about the validity of her analyses? These and other types of information, which we collectively term meta-knowledge, can be derived from the context of the event. Results We have designed an annotation scheme for meta-knowledge enrichment of biomedical event corpora. The scheme is multi-dimensional, in that each event is annotated for 5 different aspects of meta-knowledge that can be derived from the textual context of the event. Textual clues used to determine the values are also annotated. The scheme is intended to be general enough to allow integration with different types of bio-event annotation, whilst being detailed enough to capture important subtleties in the nature of the meta-knowledge expressed in the text. We report here on both the main features of the annotation scheme, as well as its application to the GENIA event corpus (1000 abstracts with 36,858 events). High levels of inter-annotator agreement have been achieved, falling in the range of 0.84-0.93 Kappa. Conclusion By augmenting event annotations with meta-knowledge, more sophisticated IE systems can be trained, which allow interpretative information to be specified as

  17. Data capture in bioinformatics: requirements and experiences with Pedro

    PubMed Central

    Jameson, Daniel; Garwood, Kevin; Garwood, Chris; Booth, Tim; Alper, Pinar; Oliver, Stephen G; Paton, Norman W

    2008-01-01

    Background The systematic capture of appropriately annotated experimental data is a prerequisite for most bioinformatics analyses. Data capture is required not only for submission of data to public repositories, but also to underpin integrated analysis, archiving, and sharing – both within laboratories and in collaborative projects. The widespread requirement to capture data means that data capture and annotation are taking place at many sites, but the small scale of the literature on tools, techniques and experiences suggests that there is work to be done to identify good practice and reduce duplication of effort. Results This paper reports on experience gained in the deployment of the Pedro data capture tool in a range of representative bioinformatics applications. The paper makes explicit the requirements that have recurred when capturing data in different contexts, indicates how these requirements are addressed in Pedro, and describes case studies that illustrate where the requirements have arisen in practice. Conclusion Data capture is a fundamental activity for bioinformatics; all biological data resources build on some form of data capture activity, and many require a blend of import, analysis and annotation. Recurring requirements in data capture suggest that model-driven architectures can be used to construct data capture infrastructures that can be rapidly configured to meet the needs of individual use cases. We have described how one such model-driven infrastructure, namely Pedro, has been deployed in representative case studies, and discussed the extent to which the model-driven approach has been effective in practice. PMID:18402673

  18. Patient Education: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Simmons, Jeannette

    Topics included in this annotated bibliography on patient education are (1) background on development of patient education programs, (2) patient education interventions, (3) references for health professionals, and (4) research and evaluation in patient education. (TA)

  19. Publication Production: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Firman, Anthony H.

    1994-01-01

    Offers brief annotations of 52 articles and papers on document production (from the Society for Technical Communication's journal and proceedings) on 9 topics: information processing, document design, using color, typography, tables, illustrations, photography, printing and binding, and production management. (SR)

  20. NCBI prokaryotic genome annotation pipeline.

    PubMed

    Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat; Chetvernin, Vyacheslav; Nawrocki, Eric P; Zaslavsky, Leonid; Lomsadze, Alexandre; Pruitt, Kim D; Borodovsky, Mark; Ostell, James

    2016-08-19

    Recent technological advances have opened unprecedented opportunities for large-scale sequencing and analysis of populations of pathogenic species in disease outbreaks, as well as for large-scale diversity studies aimed at expanding our knowledge across the whole domain of prokaryotes. To meet the challenge of timely interpretation of structure, function and meaning of this vast genetic information, a comprehensive approach to automatic genome annotation is critically needed. In collaboration with Georgia Tech, NCBI has developed a new approach to genome annotation that combines alignment based methods with methods of predicting protein-coding and RNA genes and other functional elements directly from sequence. A new gene finding tool, GeneMarkS+, uses the combined evidence of protein and RNA placement by homology as an initial map of annotation to generate and modify ab initio gene predictions across the whole genome. Thus, the new NCBI's Prokaryotic Genome Annotation Pipeline (PGAP) relies more on sequence similarity when confident comparative data are available, while it relies more on statistical predictions in the absence of external evidence. The pipeline provides a framework for generation and analysis of annotation on the full breadth of prokaryotic taxonomy. For additional information on PGAP see https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ and the NCBI Handbook, https://www.ncbi.nlm.nih.gov/books/NBK174280/.

  1. Quality of computationally inferred gene ontology annotations.

    PubMed

    Skunca, Nives; Altenhoff, Adrian; Dessimoz, Christophe

    2012-05-01

    Gene Ontology (GO) has established itself as the undisputed standard for protein function annotation. Most annotations are inferred electronically, i.e. without individual curator supervision, but they are widely considered unreliable. At the same time, we crucially depend on those automated annotations, as most newly sequenced genomes are non-model organisms. Here, we introduce a methodology to systematically and quantitatively evaluate electronic annotations. By exploiting changes in successive releases of the UniProt Gene Ontology Annotation database, we assessed the quality of electronic annotations in terms of specificity, reliability, and coverage. Overall, we not only found that electronic annotations have significantly improved in recent years, but also that their reliability now rivals that of annotations inferred by curators when they use evidence other than experiments from primary literature. This work provides the means to identify the subset of electronic annotations that can be relied upon-an important outcome given that >98% of all annotations are inferred without direct curation.

  2. Determining similarity of scientific entities in annotation datasets.

    PubMed

    Palma, Guillermo; Vidal, Maria-Esther; Haag, Eric; Raschid, Louiqa; Thor, Andreas

    2015-01-01

    Linked Open Data initiatives have made available a diversity of scientific collections where scientists have annotated entities in the datasets with controlled vocabulary terms from ontologies. Annotations encode scientific knowledge, which is captured in annotation datasets. Determining relatedness between annotated entities becomes a building block for pattern mining, e.g. identifying drug-drug relationships may depend on the similarity of the targets that interact with each drug. A diversity of similarity measures has been proposed in the literature to compute relatedness between a pair of entities. Each measure exploits some knowledge including the name, function, relationships with other entities, taxonomic neighborhood and semantic knowledge. We propose a novel general-purpose annotation similarity measure called 'AnnSim' that measures the relatedness between two entities based on the similarity of their annotations. We model AnnSim as a 1-1 maximum weight bipartite match and exploit properties of existing solvers to provide an efficient solution. We empirically study the performance of AnnSim on real-world datasets of drugs and disease associations from clinical trials and relationships between drugs and (genomic) targets. Using baselines that include a variety of measures, we identify where AnnSim can provide a deeper understanding of the semantics underlying the relatedness of a pair of entities or where it could lead to predicting new links or identifying potential novel patterns. Although AnnSim does not exploit knowledge or properties of a particular domain, its performance compares well with a variety of state-of-the-art domain-specific measures. Database URL: http://www.yeastgenome.org/

  3. Determining similarity of scientific entities in annotation datasets

    PubMed Central

    Palma, Guillermo; Vidal, Maria-Esther; Haag, Eric; Raschid, Louiqa; Thor, Andreas

    2015-01-01

    Linked Open Data initiatives have made available a diversity of scientific collections where scientists have annotated entities in the datasets with controlled vocabulary terms from ontologies. Annotations encode scientific knowledge, which is captured in annotation datasets. Determining relatedness between annotated entities becomes a building block for pattern mining, e.g. identifying drug–drug relationships may depend on the similarity of the targets that interact with each drug. A diversity of similarity measures has been proposed in the literature to compute relatedness between a pair of entities. Each measure exploits some knowledge including the name, function, relationships with other entities, taxonomic neighborhood and semantic knowledge. We propose a novel general-purpose annotation similarity measure called ‘AnnSim’ that measures the relatedness between two entities based on the similarity of their annotations. We model AnnSim as a 1–1 maximum weight bipartite match and exploit properties of existing solvers to provide an efficient solution. We empirically study the performance of AnnSim on real-world datasets of drugs and disease associations from clinical trials and relationships between drugs and (genomic) targets. Using baselines that include a variety of measures, we identify where AnnSim can provide a deeper understanding of the semantics underlying the relatedness of a pair of entities or where it could lead to predicting new links or identifying potential novel patterns. Although AnnSim does not exploit knowledge or properties of a particular domain, its performance compares well with a variety of state-of-the-art domain-specific measures. Database URL: http://www.yeastgenome.org/ PMID:25725057

  4. Summary of the 1991 Campground Receipt Study

    DTIC Science & Technology

    1993-09-01

    Miscellaneous Paper R -93-1 SAD-A271 721 September 193 US Army Corps of Engineers Waterways Experiment Station Natural Resources Research Program...endorsement or approval of the use of such commercial products. PRIMT’ ON RECYCLED PAPE Natural Resources Miscellaneous Paper R -93-1 Research Program...34Summary of the 1991 campground receipt study," Miscellaneous Paper R -93-1, U.S. Army Engineer Waterways Experiment Station, Vicksburg, MS. Previous

  5. 77 FR 39442 - Receipts-Based, Small Business Size Standard

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-03

    ..., which are administrative in nature, include updating the receipts-based, small business size standard... protection, Nuclear materials, Nuclear power plants and reactors, Penalties, Sex discrimination,...

  6. Updating annotations with the distributed annotation system and the automated sequence annotation pipeline

    PubMed Central

    Speier, William; Ochs, Michael F.

    2012-01-01

    Summary: The integration between BioDAS ProServer and Automated Sequence Annotation Pipeline (ASAP) provides an interface for querying diverse annotation sources, chaining and linking results, and standardizing the output using the Distributed Annotation System (DAS) protocol. This interface allows pipeline plans in ASAP to be integrated into any system using HTTP and also allows the information returned by ASAP to be included in the DAS registry for use in any DAS-aware system. Three example implementations have been developed: the first accesses TRANSFAC information to automatically create gene sets for the Coordinated Gene Activity in Pattern Sets (CoGAPS) algorithm; the second integrates annotations from multiple array platforms and provides unified annotations in an R environment; and the third wraps the UniProt database for integration with the SPICE DAS client. Availability: Source code for ASAP 2.7 and the DAS 1.6 interface is available under the GNU public license. Proserver 2.20 is free software available from SourceForge. Scripts for installation and configuration on Linux are provided at our website: http://www.rits.onc.jhmi.edu/dbb/custom/A6/ Contact: Speier@mii.ucla.edu or mfo@jhu.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:22945787

  7. svmPRAT: SVM-based Protein Residue Annotation Toolkit

    PubMed Central

    2009-01-01

    Background Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. Results We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training effective predictive models. Conclusions In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability: http://www.cs.gmu.edu/~mlbio/svmprat PMID:20028521

  8. Oral History: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Friedman, Paul G.

    Defining oral history as a method of inquiry by which the memories of individuals are elicited, preserved in interview transcripts or on tape recordings, and then used to enrich understanding of individuals' lives and the events in which they participated, this annotated bibliography provides a broad overview and a sampling of the resources…

  9. Music Analysis: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Fink, Michael

    One hundred and forty citations comprise this annotated bibliography of books, articles, and selected dissertations that encompass trends in music theory and k-16 music education since the late 19th century. Special emphasis is upon writings since the 1950's. During earlier development, music analysts concentrated upon the elements of music (i.e.,…

  10. Annotated Selected Puerto Rican Bibliography.

    ERIC Educational Resources Information Center

    Bravo, Enrique R., Comp.

    This work represents an effort on the part of The Urban Center to come one step closer to the realization of its goal to further the growth of ethnic studies. After extensive consultation with educationists from within and without the Puerto Rican community, it was decided that an annotated bilingual bibliography should be published to assist and…

  11. Radiocarbon Dating: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Fortine, Suellen

    This selective annotated bibliography covers various sources of information on the radiocarbon dating method, including journal articles, conference proceedings, and reports, reflecting the most important and useful sources of the last 25 years. The bibliography is divided into five parts--general background on radiocarbon, radiocarbon dating,…

  12. Hispanic Heritage. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Denver Univ., CO. School of Education.

    This annotated bibliography of a wide range of materials for the social studies teacher is concerned with the Hispano heritage. The sections are introduced by a brief description. The sections are: 1) general materials, 2) the land and the people, 3) the European background, 4) Spain's colonial system, 5) the Spanish borderlands, 6) the Anglo…

  13. Annotated Bibliography on Humanistic Education

    ERIC Educational Resources Information Center

    Ganung, Cynthia

    1975-01-01

    Part I of this annotated bibliography deals with books and articles on such topics as achievement motivation, process education, transactional analysis, discipline without punishment, role-playing, interpersonal skills, self-acceptance, moral education, self-awareness, values clarification, and non-verbal communication. Part II focuses on…

  14. Annotated Videography. Part 3. [Revised].

    ERIC Educational Resources Information Center

    United States Holocaust Memorial Museum, Washington, DC.

    This annotated videography has been designed to identify videotapes addressing Holocaust history that have been used effectively in classrooms and are available readily to most communities. The guide is divided into 15 topical categories, including: life before the Holocaust; perpetrators; propaganda; racism; antisemitism; mosaic of victims;…

  15. English Language Learners: Annotated Bibliography

    ERIC Educational Resources Information Center

    Hector-Mason, Anestine; Bardack, Sarah

    2010-01-01

    This annotated bibliography represents a first step toward compiling a comprehensive overview of current research on issues related to English language learners (ELLs). It is intended to be a resource for researchers, policymakers, administrators, and educators who are engaged in efforts to bridge the divide between research, policy, and practice…

  16. ANNOTATED BIBLIOGRAPHY OF GEOLOGICAL EDUCATION.

    ERIC Educational Resources Information Center

    BERG, J. ROBERT; AND OTHERS

    ARTICLES ABOUT GEOLOGICAL EDUCATION WRITTEN DURING THE PERIOD 1919-62 ARE INCLUDED IN THIS ANNOTATED BIBLIOGRAPHY. RECOMMENDATIONS OF INDIVIDUAL EDUCATORS AND PROFESSIONAL GROUPS FOR THE UNDERGRADUATE AND GRADUATE PREPARATION OF GEOLOGISTS ARE CONTAINED IN MOST OF THE ITEMS. THE ARTICLES WERE ORIGINALLY PUBLISHED IN PROFESSIONAL JOURNALS OR…

  17. Vietnamese Amerasians: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Johnson, Mark C.; And Others

    This annotated bibliography on Vietnamese Amerasians includes primary and secondary sources as well as reviews of three documentary films. Sources were selected in order to provide an overview of the historical and political context of Amerasian resettlement and a review of the scant available research on coping and adaptation with this…

  18. Child Development: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Dickerson, LaVerne Thornton, Comp.

    This annotated bibliography focuses on recent publications dealing with factors that influence child growth and development, rather than the developmental processes themselves. Topics include: general sources on child development; physical and perceptual-motor development; cognitive development; social and personality development; and play.…

  19. MSDAC Resource Library Annotated Bibliography.

    ERIC Educational Resources Information Center

    Watson, Cristel; And Others

    This annotated bibliography lists books, films, filmstrips, recordings, and booklets on sex equity. Entries are arranged according to the following topics: career resources, curriculum resources, management, sex equity, sex roles, women's studies, student activities, and sex-fair fiction. Included in each entry are name of author, editor or…

  20. Migrant Education: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Palmer, Barbara C., Comp.

    Materials selected for inclusion in the annotated bibliography of 139 publications from 1970 to 1980 give a general understanding of the lives of migrant children, their educational needs and problems, and various attempts made to meet those needs. The bibliography, a valuable tool for researchers and teachers in migrant education, includes books,…

  1. Nikos Kazantzakis: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Qiu, Kui

    This research paper consists of an annotated bibliography about Nikos Kazantzakis, one of the major modern Greek writers and author of "The Last Temptation of Christ,""Zorba the Greek," and many other works. Because of Kazantzakis' position in world literature there are many critical works about him; however, bibliographical…

  2. Meaningful Assessment: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Thrond, Mary A.

    The annotated bibliography contains citations of nine references on alternative student assessment methods in second language programs, particularly at the secondary school level. The references include a critique of conventional reading comprehension assessment, a discussion of performance assessment, a proposal for a multi-trait, multi-method…

  3. Workforce Reductions. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Hickok, Thomas A.; Hickok, Thomas A.

    This report, which is based on a review of practitioner-oriented sources and scholarly journals, uses a three-part framework to organize annotated bibliographies that, together, list a total of 104 sources that provide the following three perspectives on work force reduction issues: organizational, organizational-individual relationship, and…

  4. Appalachian Women. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Hamm, Mary Margo

    This bibliography compiles annotations of 178 books, journal articles, ERIC documents, and dissertations on Appalachian women and their social, cultural, and economic environment. Entries were published 1966-93 and are listed in the following categories: (1) authors and literary criticism; (2) bibliographies and resource guides; (3) economics,…

  5. Teacher Evaluation: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    McKenna, Bernard H.; And Others

    In his introduction to the 86-item annotated bibliography by Mueller and Poliakoff, McKenna discusses his views on teacher evaluation and his impressions of the documents cited. He observes, in part, that the current concern is with the process of evaluation and that most researchers continue to believe that student achievement is the most…

  6. Systems Theory and Communication. Annotated Bibliography.

    ERIC Educational Resources Information Center

    Covington, William G., Jr.

    This annotated bibliography presents annotations of 31 books and journal articles dealing with systems theory and its relation to organizational communication, marketing, information theory, and cybernetics. Materials were published between 1963 and 1992 and are listed alphabetically by author. (RS)

  7. 77 FR 19648 - Receipt of Application for a Permit Modification

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-02

    ... National Oceanic and Atmospheric Administration RIN 0648-XB144 Receipt of Application for a Permit... (NOAA), Commerce. ACTION: Notice; receipt of application for a permit modification. SUMMARY: Notice is... Beach Drive, Miami, FL 33149 , has requested a modification to scientific research Permit No....

  8. 39 CFR 2.2 - Agent for receipt of process.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 39 Postal Service 1 2013-07-01 2013-07-01 false Agent for receipt of process. 2.2 Section 2.2 Postal Service UNITED STATES POSTAL SERVICE THE BOARD OF GOVERNORS OF THE U.S. POSTAL SERVICE GENERAL AND TECHNICAL PROVISIONS (ARTICLE II) § 2.2 Agent for receipt of process. The General Counsel of the...

  9. 39 CFR 2.2 - Agent for receipt of process.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 39 Postal Service 1 2012-07-01 2012-07-01 false Agent for receipt of process. 2.2 Section 2.2 Postal Service UNITED STATES POSTAL SERVICE THE BOARD OF GOVERNORS OF THE U.S. POSTAL SERVICE GENERAL AND TECHNICAL PROVISIONS (ARTICLE II) § 2.2 Agent for receipt of process. The General Counsel of the...

  10. 39 CFR 2.2 - Agent for receipt of process.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 39 Postal Service 1 2014-07-01 2014-07-01 false Agent for receipt of process. 2.2 Section 2.2 Postal Service UNITED STATES POSTAL SERVICE THE BOARD OF GOVERNORS OF THE U.S. POSTAL SERVICE GENERAL AND TECHNICAL PROVISIONS (ARTICLE II) § 2.2 Agent for receipt of process. The General Counsel of the...

  11. 41 CFR 302-7.109 - Are receipts required?

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 41 Public Contracts and Property Management 4 2010-07-01 2010-07-01 false Are receipts required? 302-7.109 Section 302-7.109 Public Contracts and Property Management Federal Travel Regulation System... required? Yes, under the commuted rate system, a receipted copy of the warehouse or other bill for...

  12. 48 CFR 315.606-1 - Receipt and initial review.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 48 Federal Acquisition Regulations System 4 2010-10-01 2010-10-01 false Receipt and initial review. 315.606-1 Section 315.606-1 Federal Acquisition Regulations System HEALTH AND HUMAN SERVICES CONTRACTING METHODS AND CONTRACT TYPES CONTRACTING BY NEGOTIATION Unsolicited Proposals 315.606-1 Receipt...

  13. 39 CFR 2.2 - Agent for receipt of process.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 39 Postal Service 1 2011-07-01 2011-07-01 false Agent for receipt of process. 2.2 Section 2.2 Postal Service UNITED STATES POSTAL SERVICE THE BOARD OF GOVERNORS OF THE U.S. POSTAL SERVICE GENERAL AND TECHNICAL PROVISIONS (ARTICLE II) § 2.2 Agent for receipt of process. The General Counsel of the...

  14. 39 CFR 2.2 - Agent for receipt of process.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 39 Postal Service 1 2010-07-01 2010-07-01 false Agent for receipt of process. 2.2 Section 2.2 Postal Service UNITED STATES POSTAL SERVICE THE BOARD OF GOVERNORS OF THE U.S. POSTAL SERVICE GENERAL AND TECHNICAL PROVISIONS (ARTICLE II) § 2.2 Agent for receipt of process. The General Counsel of the...

  15. 1 CFR 17.1 - Receipt and processing.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 1 General Provisions 1 2010-01-01 2010-01-01 false Receipt and processing. 17.1 Section 17.1 General Provisions ADMINISTRATIVE COMMITTEE OF THE FEDERAL REGISTER PREPARATION, TRANSMITTAL, AND PROCESSING OF DOCUMENTS FILING FOR PUBLIC INSPECTION AND PUBLICATION SCHEDULES Receipt and Processing §...

  16. 1 CFR 17.1 - Receipt and processing.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 1 General Provisions 1 2011-01-01 2011-01-01 false Receipt and processing. 17.1 Section 17.1 General Provisions ADMINISTRATIVE COMMITTEE OF THE FEDERAL REGISTER PREPARATION, TRANSMITTAL, AND PROCESSING OF DOCUMENTS FILING FOR PUBLIC INSPECTION AND PUBLICATION SCHEDULES Receipt and Processing §...

  17. 75 FR 39520 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-09

    ... receipt of a premanufacture notice (PMN) or an application for a test marketing exemption (TME), and to... to publish a notice of receipt of a PMN or an application for a TME and to publish periodic status... Manufacturer/Importer Use Chemical P-10-0406 05/28/10 08/25/10 CBI (G) Polymer used to (G) Alkene...

  18. 78 FR 11871 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-20

    ... Register a notice of receipt of a premanufacture notice (PMN) or an application for a test marketing.... Section 5(h)(1) of TSCA authorizes EPA to allow persons, upon application, to manufacture (includes import... in the Federal Register a notice of receipt of a PMN or an application for a TME and to publish...

  19. 75 FR 32760 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-09

    ... application and in a destructive use as a reactant P-10-0361 04/30/10 07/28/10 CBI (G) Organic (G) Substituted... receipt of a premanufacture notice (PMN) or an application for a test marketing exemption (TME), and to... receipt of a PMN or an application for a TME and to publish periodic status reports on the chemicals...

  20. 75 FR 60447 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-30

    ... receipt of a premanufacture notice (PMN) or an application for a test marketing exemption (TME), and to...)(2) and 5(d)(3) of TSCA, EPA is required to publish a notice of receipt of a PMN or an application... use ester. P-10-0428 06/22/10 09/19/10 CBI (G) Open, non- (S) 1-hexane, polymer dispersive use as...

  1. 75 FR 37795 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-30

    ... and (G) Organic thermoplastic antioxidant polymers additive P-10-0398 05/26/10 08/23/10 CBI (G... receipt of a premanufacture notice (PMN) or an application for a test marketing exemption (TME), and to... to publish a notice of receipt of a PMN or an application for a TME and to publish periodic...

  2. 78 FR 28586 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-15

    ... Register a notice of receipt of a premanufacture notice (PMN) or an application for a test marketing... TSCA authorizes EPA to allow persons, upon application, to manufacture (includes import) or process a... Federal Register a notice of receipt of a PMN or an application for a TME and to publish in the...

  3. 75 FR 32751 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-09

    ... receipt of a premanufacture notice (PMN) or an application for a test marketing exemption (TME), and to... receipt of a PMN or an application for a TME and to publish periodic status reports on the chemicals under... (S) Dodecanedioic make foam insulation acid, polymer with 1,6-hexanediol ] P-10-0237 02/18/10...

  4. 75 FR 32754 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-09

    ... receipt of a premanufacture notice (PMN) or an application for a test marketing exemption (TME), and to... to publish a notice of receipt of a PMN or an application for a TME and to publish periodic status... compound; ester capped Nondispersive use aromatic ether polymer P-10-0254 03/01/10 05/29/10...

  5. 26 CFR 1.199-3 - Domestic production gross receipts.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 26 Internal Revenue 3 2010-04-01 2010-04-01 false Domestic production gross receipts. 1.199-3 Section 1.199-3 Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY (CONTINUED) INCOME TAX (CONTINUED) INCOME TAXES Itemized Deductions for Individuals and Corporations (continued) § 1.199-3 Domestic production gross receipts. (a)...

  6. 27 CFR 46.105 - Receipt for taxes.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 2 2012-04-01 2011-04-01 true Receipt for taxes. 46.105 Section 46.105 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT... CIGARETTE PAPERS AND TUBES Rules for Special (Occupational) Tax Payment of Special Tax § 46.105 Receipt...

  7. 21 CFR 1316.59 - Submission and receipt of evidence.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 9 2010-04-01 2010-04-01 false Submission and receipt of evidence. 1316.59 Section 1316.59 Food and Drugs DRUG ENFORCEMENT ADMINISTRATION, DEPARTMENT OF JUSTICE ADMINISTRATIVE FUNCTIONS, PRACTICES, AND PROCEDURES Administrative Hearings § 1316.59 Submission and receipt of...

  8. 42 CFR 35.51 - Manner of delivery; costs, receipts.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 42 Public Health 1 2010-10-01 2010-10-01 false Manner of delivery; costs, receipts. 35.51 Section 35.51 Public Health PUBLIC HEALTH SERVICE, DEPARTMENT OF HEALTH AND HUMAN SERVICES MEDICAL CARE AND... of delivery; costs, receipts. (a) If a person entitled under this subpart to receive the money...

  9. 26 CFR 1.993-6 - Definition of gross receipts.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... (CONTINUED) INCOME TAXES (CONTINUED) Domestic International Sales Corporations § 1.993-6 Definition of gross receipts. (a) General rule. Under section 993(f), for purposes of sections 991 through 996, the gross... 26 Internal Revenue 10 2011-04-01 2011-04-01 false Definition of gross receipts. 1.993-6 Section...

  10. 26 CFR 1.993-6 - Definition of gross receipts.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... (CONTINUED) INCOME TAXES (CONTINUED) Domestic International Sales Corporations § 1.993-6 Definition of gross receipts. (a) General rule. Under section 993(f), for purposes of sections 991 through 996, the gross... 26 Internal Revenue 10 2014-04-01 2013-04-01 true Definition of gross receipts. 1.993-6 Section...

  11. 26 CFR 1.993-6 - Definition of gross receipts.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... (CONTINUED) INCOME TAXES (CONTINUED) Domestic International Sales Corporations § 1.993-6 Definition of gross receipts. (a) General rule. Under section 993(f), for purposes of sections 991 through 996, the gross... 26 Internal Revenue 10 2012-04-01 2012-04-01 false Definition of gross receipts. 1.993-6 Section...

  12. 26 CFR 1.993-6 - Definition of gross receipts.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... (CONTINUED) INCOME TAXES (CONTINUED) Domestic International Sales Corporations § 1.993-6 Definition of gross receipts. (a) General rule. Under section 993(f), for purposes of sections 991 through 996, the gross... 26 Internal Revenue 10 2013-04-01 2013-04-01 false Definition of gross receipts. 1.993-6 Section...

  13. 7 CFR 735.300 - Warehouse receipt requirements.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ..., condition and weight of such an agricultural product is ascertained by a licensed inspector and weigher; (4... warehouse receipt has been surrendered or the depositor or the depositor's agent has provided a written... agricultural product of such identity, quantity, grade and condition as set forth in such warehouse receipt....

  14. 7 CFR 735.300 - Warehouse receipt requirements.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ..., condition and weight of such an agricultural product is ascertained by a licensed inspector and weigher; (4... warehouse receipt has been surrendered or the depositor or the depositor's agent has provided a written... agricultural product of such identity, quantity, grade and condition as set forth in such warehouse receipt....

  15. 37 CFR 2.195 - Receipt of trademark correspondence.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... correspondence. 2.195 Section 2.195 Patents, Trademarks, and Copyrights UNITED STATES PATENT AND TRADEMARK OFFICE, DEPARTMENT OF COMMERCE RULES OF PRACTICE IN TRADEMARK CASES General Information and Correspondence in Trademark Cases § 2.195 Receipt of trademark correspondence. (a) Date of receipt and Express Mail date...

  16. 37 CFR 7.4 - Receipt of correspondence.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 37 Patents, Trademarks, and Copyrights 1 2012-07-01 2012-07-01 false Receipt of correspondence. 7... CONCERNING THE INTERNATIONAL REGISTRATION OF MARKS General Information § 7.4 Receipt of correspondence. (a) Correspondence Filed Through TEAS. Correspondence relating to international applications and registrations...

  17. 37 CFR 7.4 - Receipt of correspondence.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 37 Patents, Trademarks, and Copyrights 1 2013-07-01 2013-07-01 false Receipt of correspondence. 7... CONCERNING THE INTERNATIONAL REGISTRATION OF MARKS General Information § 7.4 Receipt of correspondence. (a) Correspondence Filed Through TEAS. Correspondence relating to international applications and registrations...

  18. 37 CFR 7.4 - Receipt of correspondence.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 37 Patents, Trademarks, and Copyrights 1 2014-07-01 2014-07-01 false Receipt of correspondence. 7... CONCERNING THE INTERNATIONAL REGISTRATION OF MARKS General Information § 7.4 Receipt of correspondence. (a) Correspondence Filed Through TEAS. Correspondence relating to international applications and registrations...

  19. 37 CFR 2.195 - Receipt of trademark correspondence.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... correspondence. 2.195 Section 2.195 Patents, Trademarks, and Copyrights UNITED STATES PATENT AND TRADEMARK OFFICE, DEPARTMENT OF COMMERCE RULES OF PRACTICE IN TRADEMARK CASES General Information and Correspondence in Trademark Cases § 2.195 Receipt of trademark correspondence. (a) Date of receipt and Express Mail date...

  20. 37 CFR 2.195 - Receipt of trademark correspondence.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... correspondence. 2.195 Section 2.195 Patents, Trademarks, and Copyrights UNITED STATES PATENT AND TRADEMARK OFFICE, DEPARTMENT OF COMMERCE RULES OF PRACTICE IN TRADEMARK CASES General Information and Correspondence in Trademark Cases § 2.195 Receipt of trademark correspondence. (a) Date of receipt and Express Mail date...

  1. 37 CFR 2.195 - Receipt of trademark correspondence.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... correspondence. 2.195 Section 2.195 Patents, Trademarks, and Copyrights UNITED STATES PATENT AND TRADEMARK OFFICE, DEPARTMENT OF COMMERCE RULES OF PRACTICE IN TRADEMARK CASES General Information and Correspondence in Trademark Cases § 2.195 Receipt of trademark correspondence. (a) Date of receipt and Express Mail date...

  2. 37 CFR 2.195 - Receipt of trademark correspondence.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... correspondence. 2.195 Section 2.195 Patents, Trademarks, and Copyrights UNITED STATES PATENT AND TRADEMARK OFFICE, DEPARTMENT OF COMMERCE RULES OF PRACTICE IN TRADEMARK CASES General Information and Correspondence in Trademark Cases § 2.195 Receipt of trademark correspondence. (a) Date of receipt and Express Mail date...

  3. 37 CFR 7.4 - Receipt of correspondence.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 37 Patents, Trademarks, and Copyrights 1 2011-07-01 2011-07-01 false Receipt of correspondence. 7... CONCERNING THE INTERNATIONAL REGISTRATION OF MARKS General Information § 7.4 Receipt of correspondence. (a) Correspondence Filed Through TEAS. Correspondence relating to international applications and registrations...

  4. 7 CFR 1205.518 - Receipts for payment of assessments.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... RESEARCH AND PROMOTION Cotton Board Rules and Regulations Assessments § 1205.518 Receipts for payment of... receipt showing payment of cotton research and promotion assessments shall provide the producer with an... assessment was paid. (e) Gross price per pound received by the producer. (f) Total assessments paid by...

  5. 7 CFR 735.303 - Electronic warehouse receipts.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 7 2011-01-01 2011-01-01 false Electronic warehouse receipts. 735.303 Section 735.303 Agriculture Regulations of the Department of Agriculture (Continued) FARM SERVICE AGENCY, DEPARTMENT OF... § 735.303 Electronic warehouse receipts. (a) Warehouse operators issuing EWR under the Act may issue...

  6. 7 CFR 1131.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 9 2010-01-01 2009-01-01 true Reports of receipts and utilization. 1131.30 Section... AREA Order Regulating Handling Handler Reports § 1131.30 Reports of receipts and utilization. Each... end of the month of fluid milk products and bulk fluid cream products; and (6) The utilization...

  7. 7 CFR 1131.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 9 2014-01-01 2013-01-01 true Reports of receipts and utilization. 1131.30 Section... AREA Order Regulating Handling Handler Reports § 1131.30 Reports of receipts and utilization. Each... end of the month of fluid milk products and bulk fluid cream products; and (6) The utilization...

  8. 7 CFR 1131.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 9 2011-01-01 2011-01-01 false Reports of receipts and utilization. 1131.30 Section... AREA Order Regulating Handling Handler Reports § 1131.30 Reports of receipts and utilization. Each... end of the month of fluid milk products and bulk fluid cream products; and (6) The utilization...

  9. 7 CFR 1005.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 9 2013-01-01 2013-01-01 false Reports of receipts and utilization. 1005.30 Section... MARKETING AREA Order Regulating Handling Handler Reports § 1005.30 Reports of receipts and utilization. Each... beginning and end of the month of fluid milk products and bulk fluid cream products; and (9) The...

  10. 7 CFR 1006.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 9 2013-01-01 2013-01-01 false Reports of receipts and utilization. 1006.30 Section... AREA Order Regulating Handling Handler Reports § 1006.30 Reports of receipts and utilization. Each... and bulk fluid cream products; and (6) The utilization or disposition of all milk and milk...

  11. 7 CFR 1007.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 9 2012-01-01 2012-01-01 false Reports of receipts and utilization. 1007.30 Section... AREA Order Regulating Handling Handler Reports § 1007.30 Reports of receipts and utilization. Each... beginning and end of the month of fluid milk products and bulk fluid cream products; and (9) The...

  12. 7 CFR 1006.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 9 2012-01-01 2012-01-01 false Reports of receipts and utilization. 1006.30 Section... AREA Order Regulating Handling Handler Reports § 1006.30 Reports of receipts and utilization. Each... and bulk fluid cream products; and (6) The utilization or disposition of all milk and milk...

  13. 7 CFR 1006.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 9 2011-01-01 2011-01-01 false Reports of receipts and utilization. 1006.30 Section... AREA Order Regulating Handling Handler Reports § 1006.30 Reports of receipts and utilization. Each... and bulk fluid cream products; and (6) The utilization or disposition of all milk and milk...

  14. 7 CFR 1131.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 9 2013-01-01 2013-01-01 false Reports of receipts and utilization. 1131.30 Section... AREA Order Regulating Handling Handler Reports § 1131.30 Reports of receipts and utilization. Each... end of the month of fluid milk products and bulk fluid cream products; and (6) The utilization...

  15. 7 CFR 1005.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 9 2010-01-01 2009-01-01 true Reports of receipts and utilization. 1005.30 Section... MARKETING AREA Order Regulating Handling Handler Reports § 1005.30 Reports of receipts and utilization. Each... beginning and end of the month of fluid milk products and bulk fluid cream products; and (9) The...

  16. 7 CFR 1005.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 9 2011-01-01 2011-01-01 false Reports of receipts and utilization. 1005.30 Section... MARKETING AREA Order Regulating Handling Handler Reports § 1005.30 Reports of receipts and utilization. Each... beginning and end of the month of fluid milk products and bulk fluid cream products; and (9) The...

  17. 7 CFR 1005.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 9 2014-01-01 2013-01-01 true Reports of receipts and utilization. 1005.30 Section... MARKETING AREA Order Regulating Handling Handler Reports § 1005.30 Reports of receipts and utilization. Each... beginning and end of the month of fluid milk products and bulk fluid cream products; and (9) The...

  18. 7 CFR 1007.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 9 2010-01-01 2009-01-01 true Reports of receipts and utilization. 1007.30 Section... AREA Order Regulating Handling Handler Reports § 1007.30 Reports of receipts and utilization. Each... beginning and end of the month of fluid milk products and bulk fluid cream products; and (9) The...

  19. 7 CFR 1006.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 9 2014-01-01 2013-01-01 true Reports of receipts and utilization. 1006.30 Section... AREA Order Regulating Handling Handler Reports § 1006.30 Reports of receipts and utilization. Each... and bulk fluid cream products; and (6) The utilization or disposition of all milk and milk...

  20. 7 CFR 1007.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 9 2014-01-01 2013-01-01 true Reports of receipts and utilization. 1007.30 Section... AREA Order Regulating Handling Handler Reports § 1007.30 Reports of receipts and utilization. Each... beginning and end of the month of fluid milk products and bulk fluid cream products; and (9) The...

  1. 7 CFR 1005.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 9 2012-01-01 2012-01-01 false Reports of receipts and utilization. 1005.30 Section... MARKETING AREA Order Regulating Handling Handler Reports § 1005.30 Reports of receipts and utilization. Each... beginning and end of the month of fluid milk products and bulk fluid cream products; and (9) The...

  2. 7 CFR 1006.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 9 2010-01-01 2009-01-01 true Reports of receipts and utilization. 1006.30 Section... AREA Order Regulating Handling Handler Reports § 1006.30 Reports of receipts and utilization. Each... and bulk fluid cream products; and (6) The utilization or disposition of all milk and milk...

  3. 7 CFR 1131.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 9 2012-01-01 2012-01-01 false Reports of receipts and utilization. 1131.30 Section... AREA Order Regulating Handling Handler Reports § 1131.30 Reports of receipts and utilization. Each... end of the month of fluid milk products and bulk fluid cream products; and (6) The utilization...

  4. 7 CFR 1007.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 9 2011-01-01 2011-01-01 false Reports of receipts and utilization. 1007.30 Section... AREA Order Regulating Handling Handler Reports § 1007.30 Reports of receipts and utilization. Each... beginning and end of the month of fluid milk products and bulk fluid cream products; and (9) The...

  5. 7 CFR 1007.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 9 2013-01-01 2013-01-01 false Reports of receipts and utilization. 1007.30 Section... AREA Order Regulating Handling Handler Reports § 1007.30 Reports of receipts and utilization. Each... beginning and end of the month of fluid milk products and bulk fluid cream products; and (9) The...

  6. The Relationship of Welfare Receipt to Child Outcomes.

    ERIC Educational Resources Information Center

    Driscoll, Anne K.; Moore, Kristin A.

    Receipt of welfare is often negatively correlated with children's outcomes. However, because virtually all children who live in households that receive public assistance are poor, the question arises whether poor child outcomes are truly an effect of welfare, have only a spurious relationship to welfare receipt, or are a result of welfare…

  7. 5 CFR 838.1016 - Receipt of multiple court orders.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 5 Administrative Personnel 2 2010-01-01 2010-01-01 false Receipt of multiple court orders. 838.1016 Section 838.1016 Administrative Personnel OFFICE OF PERSONNEL MANAGEMENT (CONTINUED) CIVIL SERVICE... Retirement Benefits § 838.1016 Receipt of multiple court orders. In the event that OPM receives two or...

  8. 7 CFR 984.73 - Reports of walnut receipts.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 8 2010-01-01 2010-01-01 false Reports of walnut receipts. 984.73 Section 984.73... Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE WALNUTS GROWN IN CALIFORNIA Order Regulating Handling Reports, Books, and Other Records § 984.73 Reports of walnut receipts. Each handler...

  9. 7 CFR 984.73 - Reports of walnut receipts.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 8 2013-01-01 2013-01-01 false Reports of walnut receipts. 984.73 Section 984.73... AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE WALNUTS GROWN IN CALIFORNIA Order Regulating Handling Reports, Books, and Other Records § 984.73 Reports of walnut receipts. Each handler...

  10. 7 CFR 984.473 - Report of walnut receipts.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 8 2012-01-01 2012-01-01 false Report of walnut receipts. 984.473 Section 984.473... Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE WALNUTS GROWN IN CALIFORNIA Administrative Rules and Regulations Reports § 984.473 Report of walnut receipts. Each handler shall file...

  11. 7 CFR 984.473 - Report of walnut receipts.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 8 2010-01-01 2010-01-01 false Report of walnut receipts. 984.473 Section 984.473... Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE WALNUTS GROWN IN CALIFORNIA Administrative Rules and Regulations Reports § 984.473 Report of walnut receipts. Each handler shall file...

  12. 7 CFR 984.73 - Reports of walnut receipts.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 8 2012-01-01 2012-01-01 false Reports of walnut receipts. 984.73 Section 984.73... Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE WALNUTS GROWN IN CALIFORNIA Order Regulating Handling Reports, Books, and Other Records § 984.73 Reports of walnut receipts. Each handler...

  13. 7 CFR 984.473 - Report of walnut receipts.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 8 2013-01-01 2013-01-01 false Report of walnut receipts. 984.473 Section 984.473... AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE WALNUTS GROWN IN CALIFORNIA Administrative Rules and Regulations Reports § 984.473 Report of walnut receipts. Each handler shall file...

  14. 7 CFR 984.73 - Reports of walnut receipts.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Reports of walnut receipts. 984.73 Section 984.73... AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE WALNUTS GROWN IN CALIFORNIA Order Regulating Handling Reports, Books, and Other Records § 984.73 Reports of walnut receipts. Each handler...

  15. 7 CFR 984.473 - Report of walnut receipts.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 8 2011-01-01 2011-01-01 false Report of walnut receipts. 984.473 Section 984.473... Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE WALNUTS GROWN IN CALIFORNIA Administrative Rules and Regulations Reports § 984.473 Report of walnut receipts. Each handler shall file...

  16. 7 CFR 984.473 - Report of walnut receipts.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Report of walnut receipts. 984.473 Section 984.473... AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE WALNUTS GROWN IN CALIFORNIA Administrative Rules and Regulations Reports § 984.473 Report of walnut receipts. Each handler shall file...

  17. 7 CFR 984.73 - Reports of walnut receipts.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 8 2011-01-01 2011-01-01 false Reports of walnut receipts. 984.73 Section 984.73... Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE WALNUTS GROWN IN CALIFORNIA Order Regulating Handling Reports, Books, and Other Records § 984.73 Reports of walnut receipts. Each handler...

  18. 7 CFR 1001.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... receipts and utilization of skim milk, butterfat, milk protein, and other nonfat solids as the market... other than protein (other solids) contained in receipts of milk from producers; and (2) The utilization... SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE NORTHEAST...

  19. 20 CFR 410.520 - Reductions; receipt of State benefit.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 20 Employees' Benefits 2 2010-04-01 2010-04-01 false Reductions; receipt of State benefit. 410.520 Section 410.520 Employees' Benefits SOCIAL SECURITY ADMINISTRATION FEDERAL COAL MINE HEALTH AND SAFETY ACT OF 1969, TITLE IV-BLACK LUNG BENEFITS (1969- ) Payment of Benefits § 410.520 Reductions; receipt...

  20. 20 CFR 410.520 - Reductions; receipt of State benefit.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 20 Employees' Benefits 2 2011-04-01 2011-04-01 false Reductions; receipt of State benefit. 410.520 Section 410.520 Employees' Benefits SOCIAL SECURITY ADMINISTRATION FEDERAL COAL MINE HEALTH AND SAFETY ACT OF 1969, TITLE IV-BLACK LUNG BENEFITS (1969- ) Payment of Benefits § 410.520 Reductions; receipt...

  1. 7 CFR 1001.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... receipts and utilization of skim milk, butterfat, milk protein, and other nonfat solids as the market... other than protein (other solids) contained in receipts of milk from producers; and (2) The utilization... SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE NORTHEAST...

  2. 7 CFR 1001.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... receipts and utilization of skim milk, butterfat, milk protein, and other nonfat solids as the market... other than protein (other solids) contained in receipts of milk from producers; and (2) The utilization... SERVICE (MARKETING AGREEMENTS AND ORDERS; MILK), DEPARTMENT OF AGRICULTURE MILK IN THE NORTHEAST...

  3. 7 CFR 1001.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... receipts and utilization of skim milk, butterfat, milk protein, and other nonfat solids as the market... other than protein (other solids) contained in receipts of milk from producers; and (2) The utilization... SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE NORTHEAST...

  4. 7 CFR 1001.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... receipts and utilization of skim milk, butterfat, milk protein, and other nonfat solids as the market... other than protein (other solids) contained in receipts of milk from producers; and (2) The utilization... SERVICE (MARKETING AGREEMENTS AND ORDERS; MILK), DEPARTMENT OF AGRICULTURE MILK IN THE NORTHEAST...

  5. Capturing Callisto

    NASA Technical Reports Server (NTRS)

    2007-01-01

    The New Horizons Long Range Reconnaissance Imager (LORRI) captured these two images of Jupiter's outermost large moon, Callisto, as the spacecraft flew past Jupiter in late February. New Horizons' closest approach distance to Jupiter was 2.3 million kilometers (1.4 million miles), not far outside Callisto's orbit, which has a radius of 1.9 million kilometers (1.2 million miles). However, Callisto happened to be on the opposite side of Jupiter during the spacecraft's pass through the Jupiter system, so these images, taken from 4.7 million kilometers (3.0 million miles) and 4.2 million kilometers (2.6 million miles) away, are the closest of Callisto that New Horizons obtained.

    Callisto's ancient, crater-scarred surface makes it very different from its three more active sibling satellites, Io, Europa and Ganymede. Callisto, 4,800 kilometers (3000 miles) in diameter, displays no large-scale geological features other than impact craters, and every bright spot in these images is a crater. The largest impact feature on Callisto, the huge basin Valhalla, is visible as a bright patch at the 10 o'clock position. The craters are bright because they have excavated material relatively rich in water ice from beneath the dark, dusty material that coats most of the surface.

    The two images show essentially the same side of Callisto -- the side that faces Jupiter -- under different illumination conditions. The images accompanied scans of Callisto's infrared spectrum with New Horizons' Linear Etalon Imaging Spectral Array (LEISA). The New Horizons science team designed these scans to study how the infrared spectrum of Callisto's water ice changes as lighting and viewing conditions change, and as the ice cools through Callisto's late afternoon. The infrared spectrum of water ice depends slightly on its temperature, and a goal of New Horizons when it reaches the Pluto system (in 2015) is to use the water ice features in the spectrum of Pluto's moon Charon, and

  6. Automatic annotation of organellar genomes with DOGMA

    SciTech Connect

    Wyman, Stacia; Jansen, Robert K.; Boore, Jeffrey L.

    2004-06-01

    Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of extra-nuclear organellar (chloroplast and animal mitochondrial) genomes. It is a web-based package that allows the use of comparative BLAST searches to identify and annotate genes in a genome. DOGMA presents a list of putative genes to the user in a graphical format for viewing and editing. Annotations are stored on our password-protected server. Complete annotations can be extracted for direct submission to GenBank. Furthermore, intergenic regions of specified length can be extracted, as well the nucleotide sequences and amino acid sequences of the genes.

  7. SelenoDB 2.0: annotation of selenoprotein genes in animals and their genetic diversity in humans.

    PubMed

    Romagné, Frédéric; Santesmasses, Didac; White, Louise; Sarangi, Gaurab K; Mariotti, Marco; Hübler, Ron; Weihmann, Antje; Parra, Genís; Gladyshev, Vadim N; Guigó, Roderic; Castellano, Sergi

    2014-01-01

    SelenoDB (http://www.selenodb.org) aims to provide high-quality annotations of selenoprotein genes, proteins and SECIS elements. Selenoproteins are proteins that contain the amino acid selenocysteine (Sec) and the first release of the database included annotations for eight species. Since the release of SelenoDB 1.0 many new animal genomes have been sequenced. The annotations of selenoproteins in new genomes usually contain many errors in major databases. For this reason, we have now fully annotated selenoprotein genes in 58 animal genomes. We provide manually curated annotations for human selenoproteins, whereas we use an automatic annotation pipeline to annotate selenoprotein genes in other animal genomes. In addition, we annotate the homologous genes containing cysteine (Cys) instead of Sec. Finally, we have surveyed genetic variation in the annotated genes in humans. We use exon capture and resequencing approaches to identify single-nucleotide polymorphisms in more than 50 human populations around the world. We thus present a detailed view of the genetic divergence of Sec- and Cys-containing genes in animals and their diversity in humans. The addition of these datasets into the second release of the database provides a valuable resource for addressing medical and evolutionary questions in selenium biology.

  8. Video Annotation Tools: Technologies to Scaffold, Structure, and Transform Teacher Reflection

    ERIC Educational Resources Information Center

    Rich, Peter J.; Hannafin, Michael

    2009-01-01

    While video has long been used to capture micro teaching episodes, illustrate classroom cases and practices, and to review teaching practices, recent developments in video annotation tools may help to extend and augment teacher self-reflection. Such tools make possible the documentation and support self-analysis using verifiable evidence as well…

  9. Oncotator: cancer variant annotation tool.

    PubMed

    Ramos, Alex H; Lichtenstein, Lee; Gupta, Manaswi; Lawrence, Michael S; Pugh, Trevor J; Saksena, Gordon; Meyerson, Matthew; Getz, Gad

    2015-04-01

    Oncotator is a tool for annotating genomic point mutations and short nucleotide insertions/deletions (indels) with variant- and gene-centric information relevant to cancer researchers. This information is drawn from 14 different publicly available resources that have been pooled and indexed, and we provide an extensible framework to add additional data sources. Annotations linked to variants range from basic information, such as gene names and functional classification (e.g. missense), to cancer-specific data from resources such as the Catalogue of Somatic Mutations in Cancer (COSMIC), the Cancer Gene Census, and The Cancer Genome Atlas (TCGA). For local use, Oncotator is freely available as a python module hosted on Github (https://github.com/broadinstitute/oncotator). Furthermore, Oncotator is also available as a web service and web application at http://www.broadinstitute.org/oncotator/.

  10. CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.

    PubMed

    Park, Julie; Costanzo, Maria C; Balakrishnan, Rama; Cherry, J Michael; Hong, Eurie L

    2012-01-01

    The set of annotations at the Saccharomyces Genome Database (SGD) that classifies the cellular function of S. cerevisiae gene products using Gene Ontology (GO) terms has become an important resource for facilitating experimental analysis. In addition to capturing and summarizing experimental results, the structured nature of GO annotations allows for functional comparison across organisms as well as propagation of functional predictions between related gene products. Due to their relevance to many areas of research, ensuring the accuracy and quality of these annotations is a priority at SGD. GO annotations are assigned either manually, by biocurators extracting experimental evidence from the scientific literature, or through automated methods that leverage computational algorithms to predict functional information. Here, we discuss the relationship between literature-based and computationally predicted GO annotations in SGD and extend a strategy whereby comparison of these two types of annotation identifies genes whose annotations need review. Our method, CvManGO (Computational versus Manual GO annotations), pairs literature-based GO annotations with computational GO predictions and evaluates the relationship of the two terms within GO, looking for instances of discrepancy. We found that this method will identify genes that require annotation updates, taking an important step towards finding ways to prioritize literature review. Additionally, we explored factors that may influence the effectiveness of CvManGO in identifying relevant gene targets to find in particular those genes that are missing literature-supported annotations, but our survey found that there are no immediately identifiable criteria by which one could enrich for these under-annotated genes. Finally, we discuss possible ways to improve this strategy, and the applicability of this method to other projects that use the GO for curation. DATABASE URL: http://www.yeastgenome.org.

  11. Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization

    PubMed Central

    Misirli, Goksel; Cavaliere, Matteo; Waites, William; Pocock, Matthew; Madsen, Curtis; Gilfellon, Owen; Honorato-Zimmer, Ricardo; Zuliani, Paolo; Danos, Vincent; Wipat, Anil

    2016-01-01

    Motivation: Biological systems are complex and challenging to model and therefore model reuse is highly desirable. To promote model reuse, models should include both information about the specifics of simulations and the underlying biology in the form of metadata. The availability of computationally tractable metadata is especially important for the effective automated interpretation and processing of models. Metadata are typically represented as machine-readable annotations which enhance programmatic access to information about models. Rule-based languages have emerged as a modelling framework to represent the complexity of biological systems. Annotation approaches have been widely used for reaction-based formalisms such as SBML. However, rule-based languages still lack a rich annotation framework to add semantic information, such as machine-readable descriptions, to the components of a model. Results: We present an annotation framework and guidelines for annotating rule-based models, encoded in the commonly used Kappa and BioNetGen languages. We adapt widely adopted annotation approaches to rule-based models. We initially propose a syntax to store machine-readable annotations and describe a mapping between rule-based modelling entities, such as agents and rules, and their annotations. We then describe an ontology to both annotate these models and capture the information contained therein, and demonstrate annotating these models using examples. Finally, we present a proof of concept tool for extracting annotations from a model that can be queried and analyzed in a uniform way. The uniform representation of the annotations can be used to facilitate the creation, analysis, reuse and visualization of rule-based models. Although examples are given, using specific implementations the proposed techniques can be applied to rule-based models in general. Availability and implementation: The annotation ontology for rule-based models can be found at http

  12. Quality of Computationally Inferred Gene Ontology Annotations

    PubMed Central

    Škunca, Nives; Altenhoff, Adrian; Dessimoz, Christophe

    2012-01-01

    Gene Ontology (GO) has established itself as the undisputed standard for protein function annotation. Most annotations are inferred electronically, i.e. without individual curator supervision, but they are widely considered unreliable. At the same time, we crucially depend on those automated annotations, as most newly sequenced genomes are non-model organisms. Here, we introduce a methodology to systematically and quantitatively evaluate electronic annotations. By exploiting changes in successive releases of the UniProt Gene Ontology Annotation database, we assessed the quality of electronic annotations in terms of specificity, reliability, and coverage. Overall, we not only found that electronic annotations have significantly improved in recent years, but also that their reliability now rivals that of annotations inferred by curators when they use evidence other than experiments from primary literature. This work provides the means to identify the subset of electronic annotations that can be relied upon—an important outcome given that >98% of all annotations are inferred without direct curation. PMID:22693439

  13. Computational algorithms to predict Gene Ontology annotations

    PubMed Central

    2015-01-01

    Background Gene function annotations, which are associations between a gene and a term of a controlled vocabulary describing gene functional features, are of paramount importance in modern biology. Datasets of these annotations, such as the ones provided by the Gene Ontology Consortium, are used to design novel biological experiments and interpret their results. Despite their importance, these sources of information have some known issues. They are incomplete, since biological knowledge is far from being definitive and it rapidly evolves, and some erroneous annotations may be present. Since the curation process of novel annotations is a costly procedure, both in economical and time terms, computational tools that can reliably predict likely annotations, and thus quicken the discovery of new gene annotations, are very useful. Methods We used a set of computational algorithms and weighting schemes to infer novel gene annotations from a set of known ones. We used the latent semantic analysis approach, implementing two popular algorithms (Latent Semantic Indexing and Probabilistic Latent Semantic Analysis) and propose a novel method, the Semantic IMproved Latent Semantic Analysis, which adds a clustering step on the set of considered genes. Furthermore, we propose the improvement of these algorithms by weighting the annotations in the input set. Results We tested our methods and their weighted variants on the Gene Ontology annotation sets of three model organism genes (Bos taurus, Danio rerio and Drosophila melanogaster ). The methods showed their ability in predicting novel gene annotations and the weighting procedures demonstrated to lead to a valuable improvement, although the obtained results vary according to the dimension of the input annotation set and the considered algorithm. Conclusions Out of the three considered methods, the Semantic IMproved Latent Semantic Analysis is the one that provides better results. In particular, when coupled with a proper

  14. Domain annotation of trimeric autotransporter adhesins—daTAA

    PubMed Central

    Szczesny, Pawel; Lupas, Andrei

    2008-01-01

    Motivation: Trimeric autotransporter adhesins (TAAs), such as Yersinia YadA, Neisseria NadA, Moraxella UspAs, Haemophilus Hia and Bartonella BadA, are important pathogenicity factors of proteobacteria. Their high sequence diversity and distinct mosaic-like structure lead to difficulties in the annotation of their sequences. These stem from the large number of short repeats, the presence of compositionally unusual coiled-coils, fuzzy domain boundaries and regions of seemingly low sequence complexity. Results: We have developed a workflow, named daTAA, for the accurate domain annotation of TAAs. Its core consists of manually curated alignments and of knowledge-based rules that enhance assignments made by sequence similarity. Compared to general domain annotation servers such as PFAM, daTAA captures more domains and provides more sensitive domain detection, as well as integrated and detailed coiled-coil assignments. Availability: The daTAA server is freely accessible at http://toolkit.tuebingen.mpg.de/dataa Contact: andrei.lupas@tuebingen.mpg.de Supplementary information: Supplementary data are available at Bioinformatics online. PMID:18397894

  15. iPad: Semantic annotation and markup of radiological images.

    PubMed

    Rubin, Daniel L; Rodriguez, Cesar; Shah, Priyanka; Beaulieu, Chris

    2008-11-06

    Radiological images contain a wealth of information,such as anatomy and pathology, which is often not explicit and computationally accessible. Information schemes are being developed to describe the semantic content of images, but such schemes can be unwieldy to operationalize because there are few tools to enable users to capture structured information easily as part of the routine research workflow. We have created iPad, an open source tool enabling researchers and clinicians to create semantic annotations on radiological images. iPad hides the complexity of the underlying image annotation information model from users, permitting them to describe images and image regions using a graphical interface that maps their descriptions to structured ontologies semi-automatically. Image annotations are saved in a variety of formats,enabling interoperability among medical records systems, image archives in hospitals, and the Semantic Web. Tools such as iPad can help reduce the burden of collecting structured information from images, and it could ultimately enable researchers and physicians to exploit images on a very large scale and glean the biological and physiological significance of image content.

  16. Omics data management and annotation.

    PubMed

    Harel, Arye; Dalah, Irina; Pietrokovski, Shmuel; Safran, Marilyn; Lancet, Doron

    2011-01-01

    Technological Omics breakthroughs, including next generation sequencing, bring avalanches of data which need to undergo effective data management to ensure integrity, security, and maximal knowledge-gleaning. Data management system requirements include flexible input formats, diverse data entry mechanisms and views, user friendliness, attention to standards, hardware and software platform definition, as well as robustness. Relevant solutions elaborated by the scientific community include Laboratory Information Management Systems (LIMS) and standardization protocols facilitating data sharing and managing. In project planning, special consideration has to be made when choosing relevant Omics annotation sources, since many of them overlap and require sophisticated integration heuristics. The data modeling step defines and categorizes the data into objects (e.g., genes, articles, disorders) and creates an application flow. A data storage/warehouse mechanism must be selected, such as file-based systems and relational databases, the latter typically used for larger projects. Omics project life cycle considerations must include the definition and deployment of new versions, incorporating either full or partial updates. Finally, quality assurance (QA) procedures must validate data and feature integrity, as well as system performance expectations. We illustrate these data management principles with examples from the life cycle of the GeneCards Omics project (http://www.genecards.org), a comprehensive, widely used compendium of annotative information about human genes. For example, the GeneCards infrastructure has recently been changed from text files to a relational database, enabling better organization and views of the growing data. Omics data handling benefits from the wealth of Web-based information, the vast amount of public domain software, increasingly affordable hardware, and effective use of data management and annotation principles as outlined in this chapter.

  17. Annotating Socio-Cultural Structures in Text

    DTIC Science & Technology

    2012-10-31

    from the traditional k-Nearest Neighbor (kNN) algorithm. Using experiments on three different multi-label learning problems, i.e. Yeast gene ...annotated NP/ VP Pane: Shows the sentence parsed using the Parts of Speech tagger Document View Pane: Specifies the document (being annotated) in three...used to annotate the document. In the current application we use the Level 1, Level 2 taxonomy. New concepts may be added to or deleted from the

  18. Receipt of the Observatory at the Orbital Processing Facility

    NASA Video Gallery

    These series of photos show the receipt of the observatory at the Orbital processing facility at VAFB. The observatory was received on April 16, 2013 and transferred to its handling fixture and the...

  19. 77 FR 26602 - Withdrawal of Notice of Receipt of Petition

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-04

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF TRANSPORTATION National Highway Traffic Safety Administration Withdrawal of Notice of Receipt of Petition AGENCY: National Highway Traffic Safety Administration, DOT. ACTION: Notice withdrawal. SUMMARY: On April 23, 2012,...

  20. 76 FR 12990 - Endangered Species Receipt of Applications for Permit

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-09

    ... Fish and Wildlife Service Endangered Species Receipt of Applications for Permit AGENCY: Fish and... certain activities with endangered species. With some exceptions, the Endangered Species Act (ESA.... Background To help us carry out our conservation responsibilities for affected species, the...

  1. 48 CFR 15.606-1 - Receipt and initial review.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... CONTRACTING METHODS AND CONTRACT TYPES CONTRACTING BY NEGOTIATION Unsolicited Proposals 15.606-1 Receipt and... information for evaluation; (5) Has overall scientific, technical, or socioeconomic merit; (6) Has...

  2. 48 CFR 15.606-1 - Receipt and initial review.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... CONTRACTING METHODS AND CONTRACT TYPES CONTRACTING BY NEGOTIATION Unsolicited Proposals 15.606-1 Receipt and... information for evaluation; (5) Has overall scientific, technical, or socioeconomic merit; (6) Has...

  3. 48 CFR 315.606-1 - Receipt and initial review.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... CONTRACTING METHODS AND CONTRACT TYPES CONTRACTING BY NEGOTIATION Unsolicited Proposals 315.606-1 Receipt and... unsolicited proposals that have been rejected for grant awards due to lack of scientific merit....

  4. Scalable Semi-Automatic Annotation for Multi-Camera Person Tracking.

    PubMed

    Nino, Jorge; Frias-Velazquez, Andres; Bo Bo, Nyan; Slembrouck, Maarten; Guan, Junzhi; Debard, Glen; Vanrumste, Bart; Tuytelaars, Tinne; Philips, Wilfried

    2016-03-29

    This paper proposes a generic methodology for semi-automatic generation of reliable position annotations for evaluating multi-camera people-trackers on large video datasets. Most of the annotation data is computed automatically, by estimating a consensus tracking result from multiple existing trackers and people detectors and classifying it as either reliable or not. A small subset of the data, composed of tracks with insufficient reliability is verified by a human using a simple binary decision task, a process faster than marking the correct person position. The proposed framework is generic and can handle additional trackers. We present results on a dataset of approximately 6 hours captured by 4 cameras, featuring a person in a holiday flat, performing activities such as walking, cooking, eating, cleaning, and watching TV. When aiming for a tracking accuracy of 60cm, 80% of all video frames are automatically annotated. The annotations for the remaining 20% of the frames were added after human verification of an automatically selected subset of data. This involved about 2.4 hours of manual labour. According to a subsequent comprehensive visual inspection to judge the annotation procedure, we found 99% of the automatically annotated frames to be correct. We provide guidelines on how to apply the proposed methodology to new datasets. We also provide an exploratory study for the multi-target case, applied on existing and new benchmark video sequences.

  5. Scalable Semi-Automatic Annotation for Multi-Camera Person Tracking.

    PubMed

    Niño-Castañeda, Jorge; Frías-Velázquez, Andrés; Bo, Nyan Bo; Slembrouck, Maarten; Guan, Junzhi; Debard, Glen; Vanrumste, Bart; Tuytelaars, Tinne; Philips, Wilfried

    2016-05-01

    This paper proposes a generic methodology for the semi-automatic generation of reliable position annotations for evaluating multi-camera people-trackers on large video data sets. Most of the annotation data are automatically computed, by estimating a consensus tracking result from multiple existing trackers and people detectors and classifying it as either reliable or not. A small subset of the data, composed of tracks with insufficient reliability, is verified by a human using a simple binary decision task, a process faster than marking the correct person position. The proposed framework is generic and can handle additional trackers. We present results on a data set of $sim 6$ h captured by 4 cameras, featuring a person in a holiday flat, performing activities such as walking, cooking, eating, cleaning, and watching TV. When aiming for a tracking accuracy of 60 cm, 80% of all video frames are automatically annotated. The annotations for the remaining 20% of the frames were added after human verification of an automatically selected subset of data. This involved $sim 2.4$ h of manual labor. According to a subsequent comprehensive visual inspection to judge the annotation procedure, we found 99% of the automatically annotated frames to be correct. We provide guidelines on how to apply the proposed methodology to new data sets. We also provide an exploratory study for the multi-target case, applied on the existing and new benchmark video sequences.

  6. Guidelines for visualizing and annotating rule-based models†

    PubMed Central

    Chylek, Lily A.; Hu, Bin; Blinov, Michael L.; Emonet, Thierry; Faeder, James R.; Goldstein, Byron; Gutenkunst, Ryan N.; Haugh, Jason M.; Lipniacki, Tomasz; Posner, Richard G.; Yang, Jin; Hlavacek, William S.

    2011-01-01

    Rule-based modeling provides a means to represent cell signaling systems in a way that captures site-specific details of molecular interactions. For rule-based models to be more widely understood and (re)used, conventions for model visualization and annotation are needed. We have developed the concepts of an extended contact map and a model guide for illustrating and annotating rule-based models. An extended contact map represents the scope of a model by providing an illustration of each molecule, molecular component, direct physical interaction, post-translational modification, and enzyme-substrate relationship considered in a model. A map can also illustrate allosteric effects, structural relationships among molecular components, and compartmental locations of molecules. A model guide associates elements of a contact map with annotation and elements of an underlying model, which may be fully or partially specified. A guide can also serve to document the biological knowledge upon which a model is based. We provide examples of a map and guide for a published rule-based model that characterizes early events in IgE receptor (FcεRI) signaling. We also provide examples of how to visualize a variety of processes that are common in cell signaling systems but not considered in the example model, such as ubiquitination. An extended contact map and an associated guide can document knowledge of a cell signaling system in a form that is visual as well as executable. As a tool for model annotation, a map and guide can communicate the content of a model clearly and with precision, even for large models. PMID:21647530

  7. A beginner's guide to eukaryotic genome annotation.

    PubMed

    Yandell, Mark; Ence, Daniel

    2012-04-18

    The falling cost of genome sequencing is having a marked impact on the research community with respect to which genomes are sequenced and how and where they are annotated. Genome annotation projects have generally become small-scale affairs that are often carried out by an individual laboratory. Although annotating a eukaryotic genome assembly is now within the reach of non-experts, it remains a challenging task. Here we provide an overview of the genome annotation process and the available tools and describe some best-practice approaches.

  8. Facilitating Soldier Receipt of Needed Mental Health Treatment

    DTIC Science & Technology

    2016-01-01

    AWARD NUMBER: W81XWH-11-2-0010 TITLE: Facilitating Soldier Receipt of Needed Mental Health Treatment PRINCIPAL INVESTIGATOR: Thomas W. Britt...SUBTITLE Facilitating Soldier Receipt of Needed Mental Health Treatment Sa. CONTRACT NUMBER Sb. GRANT NUMBER W81XWH-11-2-0010 Sc. PROGRAM ELEMENT...the final version of the ’’Facilitating Mental Health Treatment (FMHT)" unit and leader training, gaining Institutional Review Board (and MRMC

  9. Estimating the annotation error rate of curated GO database sequence annotations

    PubMed Central

    Jones, Craig E; Brown, Alfred L; Baumann, Ute

    2007-01-01

    Background Annotations that describe the function of sequences are enormously important to researchers during laboratory investigations and when making computational inferences. However, there has been little investigation into the data quality of sequence function annotations. Here we have developed a new method of estimating the error rate of curated sequence annotations, and applied this to the Gene Ontology (GO) sequence database (GOSeqLite). This method involved artificially adding errors to sequence annotations at known rates, and used regression to model the impact on the precision of annotations based on BLAST matched sequences. Results We estimated the error rate of curated GO sequence annotations in the GOSeqLite database (March 2006) at between 28% and 30%. Annotations made without use of sequence similarity based methods (non-ISS) had an estimated error rate of between 13% and 18%. Annotations made with the use of sequence similarity methodology (ISS) had an estimated error rate of 49%. Conclusion While the overall error rate is reasonably low, it would be prudent to treat all ISS annotations with caution. Electronic annotators that use ISS annotations as the basis of predictions are likely to have higher false prediction rates, and for this reason designers of these systems should consider avoiding ISS annotations where possible. Electronic annotators that use ISS annotations to make predictions should be viewed sceptically. We recommend that curators thoroughly review ISS annotations before accepting them as valid. Overall, users of curated sequence annotations from the GO database should feel assured that they are using a comparatively high quality source of information. PMID:17519041

  10. Microtask crowdsourcing for disease mention annotation in PubMed abstracts.

    PubMed

    Good, Benjamin M; Nanis, Max; Wu, Chunlei; Su, Andrew I

    2015-01-01

    Identifying concepts and relationships in biomedical text enables knowledge to be applied in computational analyses. Many biological natural language processing (BioNLP) projects attempt to address this challenge, but the state of the art still leaves much room for improvement. Progress in BioNLP research depends on large, annotated corpora for evaluating information extraction systems and training machine learning models. Traditionally, such corpora are created by small numbers of expert annotators often working over extended periods of time. Recent studies have shown that workers on microtask crowdsourcing platforms such as Amazon's Mechanical Turk (AMT) can, in aggregate, generate high-quality annotations of biomedical text. Here, we investigated the use of the AMT in capturing disease mentions in PubMed abstracts. We used the NCBI Disease corpus as a gold standard for refining and benchmarking our crowdsourcing protocol. After several iterations, we arrived at a protocol that reproduced the annotations of the 593 documents in the 'training set' of this gold standard with an overall F measure of 0.872 (precision 0.862, recall 0.883). The output can also be tuned to optimize for precision (max = 0.984 when recall = 0.269) or recall (max = 0.980 when precision = 0.436). Each document was completed by 15 workers, and their annotations were merged based on a simple voting method. In total 145 workers combined to complete all 593 documents in the span of 9 days at a cost of $.066 per abstract per worker. The quality of the annotations, as judged with the F measure, increases with the number of workers assigned to each task; however minimal performance gains were observed beyond 8 workers per task. These results add further evidence that microtask crowdsourcing can be a valuable tool for generating well-annotated corpora in BioNLP. Data produced for this analysis are available at http://figshare.com/articles/Disease_Mention_Annotation_with_Mechanical_Turk/1126402.

  11. annot8r: GO, EC and KEGG annotation of EST datasets

    PubMed Central

    Schmid, Ralf; Blaxter, Mark L

    2008-01-01

    Background The expressed sequence tag (EST) methodology is an attractive option for the generation of sequence data for species for which no completely sequenced genome is available. The annotation and comparative analysis of such datasets poses a formidable challenge for research groups that do not have the bioinformatics infrastructure of major genome sequencing centres. Therefore, there is a need for user-friendly tools to facilitate the annotation of non-model species EST datasets with well-defined ontologies that enable meaningful cross-species comparisons. To address this, we have developed annot8r, a platform for the rapid annotation of EST datasets with GO-terms, EC-numbers and KEGG-pathways. Results annot8r automatically downloads all files relevant for the annotation process and generates a reference database that stores UniProt entries, their associated Gene Ontology (GO), Enzyme Commission (EC) and Kyoto Encyclopaedia of Genes and Genomes (KEGG) annotation and additional relevant data. For each of GO, EC and KEGG, annot8r extracts a specific sequence subset from the UniProt dataset based on the information stored in the reference database. These three subsets are then formatted for BLAST searches. The user provides the protein or nucleotide sequences to be annotated and annot8r runs BLAST searches against these three subsets. The BLAST results are parsed and the corresponding annotations retrieved from the reference database. The annotations are saved both as flat files and also in a relational postgreSQL results database to facilitate more advanced searches within the results. annot8r is integrated with the PartiGene suite of EST analysis tools. Conclusion annot8r is a tool that assigns GO, EC and KEGG annotations for data sets resulting from EST sequencing projects both rapidly and efficiently. The benefits of an underlying relational database, flexibility and the ease of use of the program make it ideally suited for non-model species EST

  12. Assisted annotation of medical free text using RapTAT

    PubMed Central

    Gobbel, Glenn T; Garvin, Jennifer; Reeves, Ruth; Cronin, Robert M; Heavirland, Julia; Williams, Jenifer; Weaver, Allison; Jayaramaraja, Shrimalini; Giuse, Dario; Speroff, Theodore; Brown, Steven H; Xu, Hua; Matheny, Michael E

    2014-01-01

    Objective To determine whether assisted annotation using interactive training can reduce the time required to annotate a clinical document corpus without introducing bias. Materials and methods A tool, RapTAT, was designed to assist annotation by iteratively pre-annotating probable phrases of interest within a document, presenting the annotations to a reviewer for correction, and then using the corrected annotations for further machine learning-based training before pre-annotating subsequent documents. Annotators reviewed 404 clinical notes either manually or using RapTAT assistance for concepts related to quality of care during heart failure treatment. Notes were divided into 20 batches of 19–21 documents for iterative annotation and training. Results The number of correct RapTAT pre-annotations increased significantly and annotation time per batch decreased by ∼50% over the course of annotation. Annotation rate increased from batch to batch for assisted but not manual reviewers. Pre-annotation F-measure increased from 0.5 to 0.6 to >0.80 (relative to both assisted reviewer and reference annotations) over the first three batches and more slowly thereafter. Overall inter-annotator agreement was significantly higher between RapTAT-assisted reviewers (0.89) than between manual reviewers (0.85). Discussion The tool reduced workload by decreasing the number of annotations needing to be added and helping reviewers to annotate at an increased rate. Agreement between the pre-annotations and reference standard, and agreement between the pre-annotations and assisted annotations, were similar throughout the annotation process, which suggests that pre-annotation did not introduce bias. Conclusions Pre-annotations generated by a tool capable of interactive training can reduce the time required to create an annotated document corpus by up to 50%. PMID:24431336

  13. Black English Annotations for Elementary Reading Programs.

    ERIC Educational Resources Information Center

    Prasad, Sandre

    This report describes a program that uses annotations in the teacher's editions of existing reading programs to indicate the characteristics of black English that may interfere with the reading process of black children. The first part of the report provides a rationale for the annotation approach, explaining that the discrepancy between written…

  14. Annotation as an Index to Critical Writing

    ERIC Educational Resources Information Center

    Liu, Keming

    2006-01-01

    The differences in the ability to write critical and analytical essays among students with individual annotation styles were investigated. Critical and analytical writing was determined by the writer's ability to respond to a text with logical and critical analysis and attention to its thematic argument. Annotation styles were determined by ways…

  15. An Experiment Using Document Annotations in Education.

    ERIC Educational Resources Information Center

    Lapique, Francis; Regev, Gil

    This paper describes an ongoing experiment at the Swiss Federal Institute of Technology in Lausanne regarding the use of World Wide Web-based document annotations for educational purposes. An annotation tool called Medium was built, merging database and Web technologies, to be used as a companion for classical university courses and collaborative…

  16. Annotated Catalog of Bilingual Vocational Training Materials.

    ERIC Educational Resources Information Center

    Miranda (L.) and Associates, Bethesda, MD.

    This catalog contains annotations for 170 bilingual vocational training materials. Most of the materials are written in English, but materials written in 13 source languages and directed toward speakers of 17 target languages are provided. Annotations are provided for the following different types of documents: administrative, assessment and…

  17. Elementary Social Studies. Authorized Resources Annotated List.

    ERIC Educational Resources Information Center

    Alberta Dept. of Education, Edmonton. Curriculum Standards Branch.

    This comprehensive, annotated resource list is designed to assist in selecting resources authorized by the Alberta (Canada) Education Department for the elementary social studies classroom. Within each grade and topic, annotated entries for basic learning resources are listed, followed by support learning resources and authorized teaching…

  18. Elementary Health: Authorized Resources Annotated List.

    ERIC Educational Resources Information Center

    Alberta Dept. of Education, Edmonton. Curriculum Standards Branch.

    This comprehensive, annotated resource list is designed to assist in selecting resources authorized by the Alberta (Canada) Education Department for the elementary health classroom (Grades 1-6). Within each grade and topic, annotated entries for basic learning resources are listed, followed by support learning resources and authorized teaching…

  19. Public School Choice: A Selected Annotated Bibliography.

    ERIC Educational Resources Information Center

    Crohn, Leslie; Hansen, Kenneth H.

    This annotated bibliography offers a sampling of a wide variety of viewpoints on the topic of school choice. Fourteen references selected for annotation, ranging from a 3-page journal article to a 266-page book, are listed at the beginning of the bibliography. Among the viewpoints that different authors represent are the following: (1) unlimited…

  20. Harnessing Collaborative Annotations on Online Formative Assessments

    ERIC Educational Resources Information Center

    Lin, Jian-Wei; Lai, Yuan-Cheng

    2013-01-01

    This paper harnesses collaborative annotations by students as learning feedback on online formative assessments to improve the learning achievements of students. Through the developed Web platform, students can conduct formative assessments, collaboratively annotate, and review historical records in a convenient way, while teachers can generate…

  1. Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop.

    PubMed

    Brister, James Rodney; Bao, Yiming; Kuiken, Carla; Lefkowitz, Elliot J; Le Mercier, Philippe; Leplae, Raphael; Madupu, Ramana; Scheuermann, Richard H; Schobel, Seth; Seto, Donald; Shrivastava, Susmita; Sterk, Peter; Zeng, Qiandong; Klimke, William; Tatusova, Tatiana

    2010-10-01

    Improvements in DNA sequencing technologies portend a new era in virology and could possibly lead to a giant leap in our understanding of viral evolution and ecology. Yet, as viral genome sequences begin to fill the world's biological databases, it is critically important to recognize that the scientific promise of this era is dependent on consistent and comprehensive genome annotation. With this in mind, the NCBI Genome Annotation Workshop recently hosted a study group tasked with developing sequence, function, and metadata annotation standards for viral genomes. This report describes the issues involved in viral genome annotation and reviews policy recommendations presented at the NCBI Annotation Workshop.

  2. Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

    PubMed Central

    Brister, James Rodney; Bao, Yiming; Kuiken, Carla; Lefkowitz, Elliot J.; Le Mercier, Philippe; Leplae, Raphael; Madupu, Ramana; Scheuermann, Richard H.; Schobel, Seth; Seto, Donald; Shrivastava, Susmita; Sterk, Peter; Zeng, Qiandong; Klimke, William; Tatusova, Tatiana

    2010-01-01

    Improvements in DNA sequencing technologies portend a new era in virology and could possibly lead to a giant leap in our understanding of viral evolution and ecology. Yet, as viral genome sequences begin to fill the world’s biological databases, it is critically important to recognize that the scientific promise of this era is dependent on consistent and comprehensive genome annotation. With this in mind, the NCBI Genome Annotation Workshop recently hosted a study group tasked with developing sequence, function, and metadata annotation standards for viral genomes. This report describes the issues involved in viral genome annotation and reviews policy recommendations presented at the NCBI Annotation Workshop. PMID:21994619

  3. Controlled annotations for systems biology.

    PubMed

    Juty, Nick; Laibe, Camille; Le Novère, Nicolas

    2013-01-01

    The aim of this chapter is to provide sufficient information to enable a reader, new to the subject of Systems Biology, to create and use effectively controlled annotations, using resolvable Identifiers.org Uniform Resource Identifiers (URIs). The text details the underlying requirements that have led to the development of such an identification scheme and infrastructure, the principles that underpin its syntax and the benefits derived through its use. It also places into context the relationship with other standardization efforts, how it differs from other pre-existing identification schemes, recent improvements to the system, as well as those that are planned in the future. Throughout, the reader is provided with explicit examples of use and directed to supplementary information where necessary.

  4. Genome Annotation and Curation Using MAKER and MAKER-P

    PubMed Central

    Campbell, Michael S.; Holt, Carson; Moore, Barry; Yandell, Mark

    2014-01-01

    This unit describes how to use the genome annotation and curation tools MAKER and MAKER-P to annotate protein coding and non-coding RNA genes in newly assembled genomes, update/combine legacy annotations in light of new evidence, add quality metrics to annotations from other pipelines, and map existing annotations to a new assembly. MAKER and MAKER-P can rapidly annotate genomes of any size, and scale to match available computational resources. PMID:25501943

  5. Annotating spatio-temporal datasets for meaningful analysis in the Web

    NASA Astrophysics Data System (ADS)

    Stasch, Christoph; Pebesma, Edzer; Scheider, Simon

    2014-05-01

    More and more environmental datasets that vary in space and time are available in the Web. This comes along with an advantage of using the data for other purposes than originally foreseen, but also with the danger that users may apply inappropriate analysis procedures due to lack of important assumptions made during the data collection process. In order to guide towards a meaningful (statistical) analysis of spatio-temporal datasets available in the Web, we have developed a Higher-Order-Logic formalism that captures some relevant assumptions in our previous work [1]. It allows to proof on meaningful spatial prediction and aggregation in a semi-automated fashion. In this poster presentation, we will present a concept for annotating spatio-temporal datasets available in the Web with concepts defined in our formalism. Therefore, we have defined a subset of the formalism as a Web Ontology Language (OWL) pattern. It allows capturing the distinction between the different spatio-temporal variable types, i.e. point patterns, fields, lattices and trajectories, that in turn determine whether a particular dataset can be interpolated or aggregated in a meaningful way using a certain procedure. The actual annotations that link spatio-temporal datasets with the concepts in the ontology pattern are provided as Linked Data. In order to allow data producers to add the annotations to their datasets, we have implemented a Web portal that uses a triple store at the backend to store the annotations and to make them available in the Linked Data cloud. Furthermore, we have implemented functions in the statistical environment R to retrieve the RDF annotations and, based on these annotations, to support a stronger typing of spatio-temporal datatypes guiding towards a meaningful analysis in R. [1] Stasch, C., Scheider, S., Pebesma, E., Kuhn, W. (2014): "Meaningful spatial prediction and aggregation", Environmental Modelling & Software, 51, 149-165.

  6. Genotator: A Workbench for Sequence Annotation

    SciTech Connect

    Harris, N.L.

    1997-05-01

    Sequencing centers such as the Human Genome Center at LBNL are producing an ever-increasing flood of genetic data. Annotation can greatly enhance the biological value of these sequences. Useful annotations include possible gene locations, homologies to known genes, and gene signals such as promoters and splice sites. Genotator is a workbench for automated sequence annotation and annotation browsing. The back end runs a series of sequence analysis tools on a DNA sequence, handling the various input and output formats required by the tools. Genotator currently runs five different gene finding programs, three homology searches, and searches for promoters, splice sites, and ORFs. The results of the analyses run by Genotator can be viewed with the interactive graphical browser. The browser displays color-coded sequence annotations on a canvas that can be scrolled and zoomed, allowing the annotated sequence to be explored at multiple levels of detail. The user can view the actual DNA sequence in a separate window; when a region is selected in the map display, it is automatically highlighted in the sequence display, and vice-versa. By displaying the output of all of the sequence analyses, Genotator provides an intuitive way to identify the significant regions (for example, probable exons) in a sequence. Users can interactively add personal annotations to label regions of interest. Additional capabilities of Genotator include primer design and pattern searching.

  7. Making web annotations persistent over time

    SciTech Connect

    Sanderson, Robert; Van De Sompel, Herbert

    2010-01-01

    As Digital Libraries (DL) become more aligned with the web architecture, their functional components need to be fundamentally rethought in terms of URIs and HTTP. Annotation, a core scholarly activity enabled by many DL solutions, exhibits a clearly unacceptable characteristic when existing models are applied to the web: due to the representations of web resources changing over time, an annotation made about a web resource today may no longer be relevant to the representation that is served from that same resource tomorrow. We assume the existence of archived versions of resources, and combine the temporal features of the emerging Open Annotation data model with the capability offered by the Memento framework that allows seamless navigation from the URI of a resource to archived versions of that resource, and arrive at a solution that provides guarantees regarding the persistence of web annotations over time. More specifically, we provide theoretical solutions and proof-of-concept experimental evaluations for two problems: reconstructing an existing annotation so that the correct archived version is displayed for all resources involved in the annotation, and retrieving all annotations that involve a given archived version of a web resource.

  8. 77 FR 10516 - Notice of Receipt of Requests To Voluntarily Cancel Certain Pesticide Registrations

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-22

    ... AGENCY Notice of Receipt of Requests To Voluntarily Cancel Certain Pesticide Registrations AGENCY... receipt of requests by registrants to voluntarily cancel certain pesticide registrations. EPA intends to...: Office of Pesticide Programs (OPP) Regulatory Public Docket (7502P), Environmental Protection...

  9. 75 FR 1775 - Notice of Receipt of Requests to Voluntarily Cancel Certain Pesticide Registrations

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-13

    ... AGENCY Notice of Receipt of Requests to Voluntarily Cancel Certain Pesticide Registrations AGENCY... receipt of request by registrants to voluntarily cancel certain pesticide registrations. DATES: Unless a...-line instructions for submitting comments. Mail: Office of Pesticide Programs (OPP) Regulatory...

  10. 47 CFR 80.1117 - Procedure for receipt and acknowledgement of distress alerts.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... selective calling of receipt of a distress alert in the terrestrial services must comply with ITU-R M.541-9 (incorporated by reference, see § 80.7). (b) Acknowledgement through a satellite of receipt of a distress...

  11. 47 CFR 80.1117 - Procedure for receipt and acknowledgement of distress alerts.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... selective calling of receipt of a distress alert in the terrestrial services must comply with ITU-R M.541-9 (incorporated by reference, see § 80.7). (b) Acknowledgement through a satellite of receipt of a distress...

  12. 78 FR 9775 - Cooper Tire & Rubber Company, Receipt of Petition for Decision of Inconsequential Noncompliance

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-11

    ... National Highway Traffic Safety Administration Cooper Tire & Rubber Company, Receipt of Petition for.... ACTION: Receipt of Petition. SUMMARY: Cooper Tire & Rubber Company (Cooper),\\1\\ has determined that..., Defect and Noncompliance Responsibility and Reports. \\1\\ Cooper Tire & Rubber Company, is a...

  13. Bisphenol A exposure via thermal paper receipts.

    PubMed

    Porras, Simo P; Heinälä, Milla; Santonen, Tiina

    2014-11-04

    Bisphenol A (BPA) has one of the highest production volumes of all chemicals worldwide. It has been widely studied because of its endocrine modulating activity. In addition to dietary intake, absorption of BPA via the skin from handling thermal papers is believed to be a relevant route of exposure. We studied BPA exposure via thermal paper receipts in simulation experiments performed by three volunteers, and examined urinary excretion of BPA. We also evaluated background BPA excretion among the Finnish working-age population. The geometric mean BPA excretion among non-occupationally exposed working-age Finns (n=121) was 2.6 μg/l, the range being 0.8-18.9 μg/l. The 95th percentile of the non-occupationally exposed people was 8 μg/l, and this was set as the reference limit for the non-occupationally exposed population. In the first simulation experiment, which was conducted under conditions representing the most likely exposure, i.e., the work of a cashier in a supermarket, BPA excretion remained below the reference limit in all participants. In the second simulation experiment, with more intensive, short-time handling of thermal paper (three times 5 min), urinary excretion also remained at or below background levels (highest value being 10.3 μg/l). The calculated maximum BPA excretion per day after handling thermal paper was less than 0.2 μg/kg of body weight, suggesting a total daily intake over 25 times lower than the European Food Safety Authority's (EFSA's) proposal for a temporary tolerable daily intake (temporary TDI) (5 μg/kg/day).

  14. Video Screen Capture Basics

    ERIC Educational Resources Information Center

    Dunbar, Laura

    2014-01-01

    This article is an introduction to video screen capture. Basic information of two software programs, QuickTime for Mac and BlueBerry Flashback Express for PC, are also discussed. Practical applications for video screen capture are given.

  15. The Scientific and Historical Value of Annotations on Astronomical Photographic Plates

    NASA Astrophysics Data System (ADS)

    Schechner, Sara J.; Sliski, David

    2016-02-01

    The application of photography to astronomy was a critical step in the development of astrophysics at the end of the nineteenth century. Using custom-built photographic telescopes and objective prisms, astronomers took images of the sky on glass plates during a 100-year period from many observing stations around the globe. After each plate was developed, astronomers and their assistants studied and annotated the plates as they made astrometric, photometric and spectroscopic measurements, counted galaxies, observed stellar variability, tracked meteors, and calculated the ephemerides of asteroids and comets. In this paper, the authors assess the importance of the plate annotations for future scientific, historical, and educational programs. Unfortunately, many of these interesting annotations are now being erased when grime is removed from the plates before they are digitized to make the photometric data available for time-domain astrophysics. To see what professional astronomers and historians think about this situation, the authors conducted a survey. This paper captures the lively discussion on the pros and cons of the removal of plate markings, how to best to document them if they must be cleaned off, and what to do with plates whose annotations are deemed too valuable to be erased. Three appendices to the paper offer professional guidance on the best practices for handling and cleaning the plates, photographing any annotations, and rehousing them.

  16. Applying Content Management to Automated Provenance Capture

    SciTech Connect

    Schuchardt, Karen L.; Gibson, Tara D.; Stephan, Eric G.; Chin, George

    2008-04-10

    Workflows and data pipelines are becoming increasingly valuable in both computational and experimen-tal sciences. These automated systems are capable of generating significantly more data within the same amount of time than their manual counterparts. Automatically capturing and recording data prove-nance and annotation as part of these workflows is critical for data management, verification, and dis-semination. Our goal in addressing the provenance challenge was to develop and end-to-end system that demonstrates real-time capture, persistent content management, and ad-hoc searches of both provenance and metadata using open source software and standard protocols. We describe our prototype, which extends the Kepler workflow tools for the execution environment, the Scientific Annotation Middleware (SAM) content management software for data services, and an existing HTTP-based query protocol. Our implementation offers several unique capabilities, and through the use of standards, is able to pro-vide access to the provenance record to a variety of commonly available client tools.

  17. 7 CFR 1.13 - Date of receipt of requests or appeals.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 1 2013-01-01 2013-01-01 false Date of receipt of requests or appeals. 1.13 Section 1.13 Agriculture Office of the Secretary of Agriculture ADMINISTRATIVE REGULATIONS Official Records § 1.13 Date of receipt of requests or appeals. The date of receipt of a request or appeal shall be...

  18. 7 CFR 1.13 - Date of receipt of requests or appeals.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 1 2010-01-01 2010-01-01 false Date of receipt of requests or appeals. 1.13 Section 1.13 Agriculture Office of the Secretary of Agriculture ADMINISTRATIVE REGULATIONS Official Records § 1.13 Date of receipt of requests or appeals. The date of receipt of a request or appeal shall be...

  19. 10 CFR 34.63 - Records of receipt and transfer of sealed sources.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 10 Energy 1 2010-01-01 2010-01-01 false Records of receipt and transfer of sealed sources. 34.63... receipt and transfer of sealed sources. (a) Each licensee shall maintain records showing the receipts and transfers of sealed sources and devices using DU for shielding and retain each record for 3 years after...

  20. 27 CFR 31.61 - Single sale of liquors or warehouse receipts.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... warehouse receipts. 31.61 Section 31.61 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND... Persons Who Are Not Dealers in Liquors Or Beer § 31.61 Single sale of liquors or warehouse receipts. A single sale of distilled spirits, wines, or beer, or a single sale of one or more warehouse receipts...

  1. 15 CFR 904.102 - Procedures upon receipt of a NOVA.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 15 Commerce and Foreign Trade 3 2014-01-01 2014-01-01 false Procedures upon receipt of a NOVA. 904... PROCEDURES Civil Penalties § 904.102 Procedures upon receipt of a NOVA. (a) The respondent has 30 days from receipt of the NOVA in which to respond. During this time the respondent may: (1) Accept the penalty...

  2. 15 CFR 904.102 - Procedures upon receipt of a NOVA.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 15 Commerce and Foreign Trade 3 2010-01-01 2010-01-01 false Procedures upon receipt of a NOVA. 904... PROCEDURES Civil Penalties § 904.102 Procedures upon receipt of a NOVA. (a) The respondent has 30 days from receipt of the NOVA in which to respond. During this time the respondent may: (1) Accept the penalty...

  3. 15 CFR 904.102 - Procedures upon receipt of a NOVA.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 15 Commerce and Foreign Trade 3 2012-01-01 2012-01-01 false Procedures upon receipt of a NOVA. 904... PROCEDURES Civil Penalties § 904.102 Procedures upon receipt of a NOVA. (a) The respondent has 30 days from receipt of the NOVA in which to respond. During this time the respondent may: (1) Accept the penalty...

  4. 15 CFR 904.102 - Procedures upon receipt of a NOVA.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 15 Commerce and Foreign Trade 3 2011-01-01 2011-01-01 false Procedures upon receipt of a NOVA. 904... PROCEDURES Civil Penalties § 904.102 Procedures upon receipt of a NOVA. (a) The respondent has 30 days from receipt of the NOVA in which to respond. During this time the respondent may: (1) Accept the penalty...

  5. 15 CFR 904.102 - Procedures upon receipt of a NOVA.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 15 Commerce and Foreign Trade 3 2013-01-01 2013-01-01 false Procedures upon receipt of a NOVA. 904... PROCEDURES Civil Penalties § 904.102 Procedures upon receipt of a NOVA. (a) The respondent has 30 days from receipt of the NOVA in which to respond. During this time the respondent may: (1) Accept the penalty...

  6. 5 CFR 843.206 - Designation of beneficiary-proof of receipt.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 5 Administrative Personnel 2 2011-01-01 2011-01-01 false Designation of beneficiary-proof of receipt. 843.206 Section 843.206 Administrative Personnel OFFICE OF PERSONNEL MANAGEMENT (CONTINUED) CIVIL... One-time Payments § 843.206 Designation of beneficiary—proof of receipt. (a) Upon receipt of...

  7. 27 CFR 19.342 - Receipt of spirits, wines, and alcoholic flavoring materials for processing.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2011-04-01 2011-04-01 false Receipt of spirits, wines... PLANTS Processing of Distilled Spirits Rules for Receipt and Use of Spirits, Wines, and Alcoholic Flavoring Materials § 19.342 Receipt of spirits, wines, and alcoholic flavoring materials for processing....

  8. 27 CFR 19.342 - Receipt of spirits, wines, and alcoholic flavoring materials for processing.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2012-04-01 2012-04-01 false Receipt of spirits, wines... PLANTS Processing of Distilled Spirits Rules for Receipt and Use of Spirits, Wines, and Alcoholic Flavoring Materials § 19.342 Receipt of spirits, wines, and alcoholic flavoring materials for processing....

  9. 27 CFR 19.342 - Receipt of spirits, wines, and alcoholic flavoring materials for processing.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2013-04-01 2013-04-01 false Receipt of spirits, wines... PLANTS Processing of Distilled Spirits Rules for Receipt and Use of Spirits, Wines, and Alcoholic Flavoring Materials § 19.342 Receipt of spirits, wines, and alcoholic flavoring materials for processing....

  10. 27 CFR 19.342 - Receipt of spirits, wines, and alcoholic flavoring materials for processing.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2014-04-01 2014-04-01 false Receipt of spirits, wines... PLANTS Processing of Distilled Spirits Rules for Receipt and Use of Spirits, Wines, and Alcoholic Flavoring Materials § 19.342 Receipt of spirits, wines, and alcoholic flavoring materials for processing....

  11. 5 CFR 843.206 - Designation of beneficiary-proof of receipt.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 5 Administrative Personnel 2 2010-01-01 2010-01-01 false Designation of beneficiary-proof of receipt. 843.206 Section 843.206 Administrative Personnel OFFICE OF PERSONNEL MANAGEMENT (CONTINUED) CIVIL... One-time Payments § 843.206 Designation of beneficiary—proof of receipt. (a) Upon receipt of...

  12. 40 CFR 725.29 - EPA acknowledgement of receipt of submission.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 40 Protection of Environment 30 2010-07-01 2010-07-01 false EPA acknowledgement of receipt of... Procedures § 725.29 EPA acknowledgement of receipt of submission. (a) EPA will acknowledge receipt of each... Toxics Document Control Officer. (b) The acknowledgement does not constitute a finding by EPA that...

  13. 10 CFR 2.1301 - Public notice of receipt of a license transfer application.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 10 Energy 1 2011-01-01 2011-01-01 false Public notice of receipt of a license transfer application... PROCEEDINGS AND ISSUANCE OF ORDERS Procedures for Hearings on License Transfer Applications § 2.1301 Public notice of receipt of a license transfer application. (a) The Commission will notice the receipt of...

  14. 10 CFR 2.1301 - Public notice of receipt of a license transfer application.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 10 Energy 1 2012-01-01 2012-01-01 false Public notice of receipt of a license transfer application... PROCEEDINGS AND ISSUANCE OF ORDERS Procedures for Hearings on License Transfer Applications § 2.1301 Public notice of receipt of a license transfer application. (a) The Commission will notice the receipt of...

  15. THERMOCHROMISM AND PHOTOTROPISM: AN ANNOTATED BIBLIOGRAPHY,

    DTIC Science & Technology

    This annotated bibliography contains 151 selected references to materials that exhibit the phenomena of thermochromism (reversible color change...removed. Thermochromic coatings whose color is dependent on temperature can be used for thermal control of space satellites. (Author)

  16. An Informally Annotated Bibliography of Sociolinguistics.

    ERIC Educational Resources Information Center

    Tannen, Deborah

    This annotated bibliography of sociolinguistics is divided into the following sections: speech events, ethnography of speaking and anthropological approaches to analysis of conversation; discourse analysis (including analysis of conversation and narrative), ethnomethodology and nonverbal communication; sociolinguistics; pragmatics (including…

  17. GRADUATE AND PROFESSIONAL EDUCATION, AN ANNOTATED BIBLIOGRAPHY.

    ERIC Educational Resources Information Center

    HEISS, ANN M.; AND OTHERS

    THIS ANNOTATED BIBLIOGRAPHY CONTAINS REFERENCES TO GENERAL GRADUATE EDUCATION AND TO EDUCATION FOR THE FOLLOWING PROFESSIONAL FIELDS--ARCHITECTURE, BUSINESS, CLINICAL PSYCHOLOGY, DENTISTRY, ENGINEERING, LAW, LIBRARY SCIENCE, MEDICINE, NURSING, SOCIAL WORK, TEACHING, AND THEOLOGY. (HW)

  18. SASL: A Semantic Annotation System for Literature

    NASA Astrophysics Data System (ADS)

    Yuan, Pingpeng; Wang, Guoyin; Zhang, Qin; Jin, Hai

    Due to ambiguity, search engines for scientific literatures may not return right search results. One efficient solution to the problems is to automatically annotate literatures and attach the semantic information to them. Generally, semantic annotation requires identifying entities before attaching semantic information to them. However, due to abbreviation and other reasons, it is very difficult to identify entities correctly. The paper presents a Semantic Annotation System for Literature (SASL), which utilizes Wikipedia as knowledge base to annotate literatures. SASL mainly attaches semantic to terminology, academic institutions, conferences, and journals etc. Many of them are usually abbreviations, which induces ambiguity. Here, SASL uses regular expressions to extract the mapping between full name of entities and their abbreviation. Since full names of several entities may map to a single abbreviation, SASL introduces Hidden Markov Model to implement name disambiguation. Finally, the paper presents the experimental results, which confirm SASL a good performance.

  19. Capture Their Attention: Capturing Lessons Using Screen Capture Software

    ERIC Educational Resources Information Center

    Drumheller, Kristina; Lawler, Gregg

    2011-01-01

    When students miss classes for university activities such as athletic and academic events, they inevitably miss important class material. Students can get notes from their peers or visit professors to find out what they missed, but when students miss new and challenging material these steps are sometimes not enough. Screen capture and recording…

  20. The center for expanded data annotation and retrieval.

    PubMed

    Musen, Mark A; Bean, Carol A; Cheung, Kei-Hoi; Dumontier, Michel; Durante, Kim A; Gevaert, Olivier; Gonzalez-Beltran, Alejandra; Khatri, Purvesh; Kleinstein, Steven H; O'Connor, Martin J; Pouliot, Yannick; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Wiser, Jeffrey A

    2015-11-01

    The Center for Expanded Data Annotation and Retrieval is studying the creation of comprehensive and expressive metadata for biomedical datasets to facilitate data discovery, data interpretation, and data reuse. We take advantage of emerging community-based standard templates for describing different kinds of biomedical datasets, and we investigate the use of computational techniques to help investigators to assemble templates and to fill in their values. We are creating a repository of metadata from which we plan to identify metadata patterns that will drive predictive data entry when filling in metadata templates. The metadata repository not only will capture annotations specified when experimental datasets are initially created, but also will incorporate links to the published literature, including secondary analyses and possible refinements or retractions of experimental interpretations. By working initially with the Human Immunology Project Consortium and the developers of the ImmPort data repository, we are developing and evaluating an end-to-end solution to the problems of metadata authoring and management that will generalize to other data-management environments.

  1. The center for expanded data annotation and retrieval

    PubMed Central

    Bean, Carol A; Cheung, Kei-Hoi; Dumontier, Michel; Durante, Kim A; Gevaert, Olivier; Gonzalez-Beltran, Alejandra; Khatri, Purvesh; Kleinstein, Steven H; O’Connor, Martin J; Pouliot, Yannick; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Wiser, Jeffrey A

    2015-01-01

    The Center for Expanded Data Annotation and Retrieval is studying the creation of comprehensive and expressive metadata for biomedical datasets to facilitate data discovery, data interpretation, and data reuse. We take advantage of emerging community-based standard templates for describing different kinds of biomedical datasets, and we investigate the use of computational techniques to help investigators to assemble templates and to fill in their values. We are creating a repository of metadata from which we plan to identify metadata patterns that will drive predictive data entry when filling in metadata templates. The metadata repository not only will capture annotations specified when experimental datasets are initially created, but also will incorporate links to the published literature, including secondary analyses and possible refinements or retractions of experimental interpretations. By working initially with the Human Immunology Project Consortium and the developers of the ImmPort data repository, we are developing and evaluating an end-to-end solution to the problems of metadata authoring and management that will generalize to other data-management environments. PMID:26112029

  2. Cryogenic Carbon Capture

    SciTech Connect

    2010-07-15

    IMPACCT Project: SES is developing a process to capture CO2 from the exhaust gas of coal-fired power plants by desublimation - the conversion of a gas to a solid. Capturing CO2 as a solid and delivering it as a liquid avoids the large energy cost of CO2 gas compression. SES’ capture technology facilitates the prudent use of available energy resources. Coal is our most abundant energy resource and is an excellent fuel for baseline power production. SES capture technology can capture 99% of the CO2 emissions in addition to a wide range of other pollutants more efficiently and at lower costs than existing capture technologies. SES’ capture technology can be readily added to our existing energy infrastructure.

  3. Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees.

    PubMed

    Wang, Qinghua; Arighi, Cecilia N; King, Benjamin L; Polson, Shawn W; Vincent, James; Chen, Chuming; Huang, Hongzhan; Kingham, Brewster F; Page, Shallee T; Rendino, Marc Farnum; Thomas, William Kelley; Udwary, Daniel W; Wu, Cathy H

    2012-01-01

    Recent advances in high-throughput DNA sequencing technologies have equipped biologists with a powerful new set of tools for advancing research goals. The resulting flood of sequence data has made it critically important to train the next generation of scientists to handle the inherent bioinformatic challenges. The North East Bioinformatics Collaborative (NEBC) is undertaking the genome sequencing and annotation of the little skate (Leucoraja erinacea) to promote advancement of bioinformatics infrastructure in our region, with an emphasis on practical education to create a critical mass of informatically savvy life scientists. In support of the Little Skate Genome Project, the NEBC members have developed several annotation workshops and jamborees to provide training in genome sequencing, annotation and analysis. Acting as a nexus for both curation activities and dissemination of project data, a project web portal, SkateBase (http://skatebase.org) has been developed. As a case study to illustrate effective coupling of community annotation with workforce development, we report the results of the Mitochondrial Genome Annotation Jamborees organized to annotate the first completely assembled element of the Little Skate Genome Project, as a culminating experience for participants from our three prior annotation workshops. We are applying the physical/virtual infrastructure and lessons learned from these activities to enhance and streamline the genome annotation workflow, as we look toward our continuing efforts for larger-scale functional and structural community annotation of the L. erinacea genome.

  4. Development and Evaluation of an Automated Annotation Pipeline and cDNA Annotation System

    PubMed Central

    Kasukawa, Takeya; Furuno, Masaaki; Nikaido, Itoshi; Bono, Hidemasa; Hume, David A.; Bult, Carol; Hill, David P.; Baldarelli, Richard; Gough, Julian; Kanapin, Alexander; Matsuda, Hideo; Schriml, Lynn M.; Hayashizaki, Yoshihide; Okazaki, Yasushi; Quackenbush, John

    2003-01-01

    Manual curation has long been held to be the “gold standard” for functional annotation of DNA sequence. Our experience with the annotation of more than 20,000 full-length cDNA sequences revealed problems with this approach, including inaccurate and inconsistent assignment of gene names, as well as many good assignments that were difficult to reproduce using only computational methods. For the FANTOM2 annotation of more than 60,000 cDNA clones, we developed a number of methods and tools to circumvent some of these problems, including an automated annotation pipeline that provides high-quality preliminary annotation for each sequence by introducing an “uninformative filter” that eliminates uninformative annotations, controlled vocabularies to accurately reflect both the functional assignments and the evidence supporting them, and a highly refined, Web-based manual annotation tool that allows users to view a wide array of sequence analyses and to assign gene names and putative functions using a consistent nomenclature. The ultimate utility of our approach is reflected in the low rate of reassignment of automated assignments by manual curation. Based on these results, we propose a new standard for large-scale annotation, in which the initial automated annotations are manually investigated and then computational methods are iteratively modified and improved based on the results of manual curation. PMID:12819153

  5. AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations

    PubMed Central

    Kucera, Mike; Isserlin, Ruth; Arkhangorodsky, Arkady; Bader, Gary D.

    2016-01-01

    Networks often contain regions of tightly connected nodes, or clusters, that highlight their shared relationships. An effective way to create a visual summary of a network is to identify clusters and annotate them with an enclosing shape and a summarizing label. Cytoscape provides the ability to annotate a network with shapes and labels, however these annotations must be created manually one at a time, which can be a laborious process. AutoAnnotate is a Cytoscape 3 App that automates the process of identifying clusters and visually annotating them. It greatly reduces the time and effort required to fully annotate clusters in a network, and provides freedom to experiment with different strategies for identifying and labelling clusters. Many customization options are available that enable the user to refine the generated annotations as required. Annotated clusters may be collapsed into single nodes using the Cytoscape groups feature, which helps simplify a network by making its overall structure more visible. AutoAnnotate is applicable to any type of network, including enrichment maps, protein-protein interactions, pathways, or social networks. PMID:27830058

  6. AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations.

    PubMed

    Kucera, Mike; Isserlin, Ruth; Arkhangorodsky, Arkady; Bader, Gary D

    2016-01-01

    Networks often contain regions of tightly connected nodes, or clusters, that highlight their shared relationships. An effective way to create a visual summary of a network is to identify clusters and annotate them with an enclosing shape and a summarizing label. Cytoscape provides the ability to annotate a network with shapes and labels, however these annotations must be created manually one at a time, which can be a laborious process. AutoAnnotate is a Cytoscape 3 App that automates the process of identifying clusters and visually annotating them. It greatly reduces the time and effort required to fully annotate clusters in a network, and provides freedom to experiment with different strategies for identifying and labelling clusters. Many customization options are available that enable the user to refine the generated annotations as required. Annotated clusters may be collapsed into single nodes using the Cytoscape groups feature, which helps simplify a network by making its overall structure more visible. AutoAnnotate is applicable to any type of network, including enrichment maps, protein-protein interactions, pathways, or social networks.

  7. Concept annotation and search space decrement of digital photos using optical context information

    NASA Astrophysics Data System (ADS)

    Sinha, Pinaki; Jain, Ramesh

    2008-01-01

    A modern digital camera is not just a single sensor capturing light. It is an ensemble of different sensors which capture independent contextual information about the photo shooting event. This is stored as metadata in the image. In this paper, we demonstrate how the optical metadata (data related to the optics of the camera) can be retrieved, interpreted and used along with content information for organizing and indexing digital photos. Our model is based on the physics of vision and operation of a camera. We use our algorithm on images from personal photo albums. Our results show that the optical metadata improves annotation performance and decreases the search space for retrieval.

  8. Algae from the arid southwestern United States: an annotated bibliography

    SciTech Connect

    Thomas, W.H.; Gaines, S.R.

    1983-06-01

    Desert algae are attractive biomass producers for capturing solar energy through photosynthesis of organic matter. They are probably capable of higher yields and efficiencies of light utilization than higher plants, and are already adapted to extremes of sunlight intensity, salinity and temperature such as are found in the desert. This report consists of an annotated bibliography of the literature on algae from the arid southwestern United States. It was prepared in anticipation of efforts to isolate desert algae and study their yields in the laboratory. These steps are necessary prior to setting up outdoor algal culture ponds. Desert areas are attractive for such applications because land, sunlight, and, to some extent, water resources are abundant there. References are sorted by state.

  9. An Annotated and Federated Digital Library of Marine Animal Sounds

    DTIC Science & Technology

    2005-01-01

    of the annotations and the relevant segment delimitation points and linkages to other relevant metadata fields; e) search engines that support the...annotators to add information to the same recording, and search engines that permit either all-annotator or specific-annotator searches. To our knowledge

  10. JGI Plant Genomics Gene Annotation Pipeline

    SciTech Connect

    Shu, Shengqiang; Rokhsar, Dan; Goodstein, David; Hayes, David; Mitros, Therese

    2014-07-14

    Plant genomes vary in size and are highly complex with a high amount of repeats, genome duplication and tandem duplication. Gene encodes a wealth of information useful in studying organism and it is critical to have high quality and stable gene annotation. Thanks to advancement of sequencing technology, many plant species genomes have been sequenced and transcriptomes are also sequenced. To use these vastly large amounts of sequence data to make gene annotation or re-annotation in a timely fashion, an automatic pipeline is needed. JGI plant genomics gene annotation pipeline, called integrated gene call (IGC), is our effort toward this aim with aid of a RNA-seq transcriptome assembly pipeline. It utilizes several gene predictors based on homolog peptides and transcript ORFs. See Methods for detail. Here we present genome annotation of JGI flagship green plants produced by this pipeline plus Arabidopsis and rice except for chlamy which is done by a third party. The genome annotations of these species and others are used in our gene family build pipeline and accessible via JGI Phytozome portal whose URL and front page snapshot are shown below.

  11. IFA - INTELLIGENT FRONT ANNOTATION PROGRAM

    NASA Technical Reports Server (NTRS)

    Burke, G. R.

    1994-01-01

    An important aspect of an ASIC (Application Specific Integrated Circuit) design process is verification. The design must not only be functionally accurate, but it must also maintain the correct timing. After a circuit has been laid out, one can utilize the Back Annotation (BA) method to simulate the design and obtain an accurate estimate of performance. However, this can lead to major design changes. It is therefore preferable to eliminate potential problems early in this process. IFA, the Intelligent Front Annotation program, assists in verifying the timing of the ASIC early in the design process. Many difficulties can arise during ASIC design. In a synchronous design, both long path and short path problems can be present. In modern ASIC technologies, the delay through a gate is very dependent on loading. This loading has two main components, the capacitance of the gates being driven and the capacitance of the metal tracks (wires). When using GaAs gate arrays, the metal line capacitance is often the dominating factor. Additionally, the RC delay through the wire itself is significant in sub-micron technologies. Since the wire lengths are unknown before place and route of the entire chip, this would seem to postpone any realistic timing verification until towards the end of the design process, obviously an undesirable situation. The IFA program estimates the delays in an ASIC before layout. Currently the program is designed for Vitesse GaAs gate arrays and, for input, requires the expansion file which is output by the program GED; however, the algorithm is appropriate for many different ASIC types and CAE platforms. IFA is especially useful for devices whose delay is extremely dependent on the interconnection wiring. It estimates the length of the interconnects using information supplied by the user and information in the netlist. The resulting wire lengths are also used to constrain the Place and Route program, ensuring reasonable results. IFA takes locality into

  12. Annotated checklist of Georgia birds

    USGS Publications Warehouse

    Beaton, G.; Sykes, P.W.; Parrish, J.W.

    2003-01-01

    This edition of the checklist includes 446 species, of which 407 are on the Regular Species List, 8 on the Provisional, and 31 on the Hypothetical. This new publication has been greatly expanded and much revised over the previous checklist (GOS Occasional Publ. No. 10, 1986, 48 pp., 6x9 inches) to a 7x10-inch format with an extensive Literature Cited section added, 22 species added to the Regular List, 2 to the Provisional List, and 9 to the Hypothetical List. Each species account is much more comprehensive over all previous editions of the checklist. Among some of the new features are citations for sources of most information used, high counts of individuals for each species on the Regular List, extreme dates of occurrence within physiographic regions, a list of abbreviations and acronyms, and for each species the highest form of verifiable documentation given with its repository institution with a catalog number. This checklist is helpful for anyone working with birds in the Southeastern United States or birding in that region. Sykes' contribution to this fifth edition of the Annotated Checklist of Georgia Birds includes: suggestion of the large format and spiral binding, use of Richard A. Parks' painting of the Barn Owl on the front cover, use of literature citations throughout, and inclusion of high counts for each species. Sykes helped plan all phases of the publication, wrote about 90% of the Introduction and 84 species accounts (Osprey through Red Phalarope), designed the four maps in the introduction section and format for the Literature Cited, and with Giff Beaton designed the layout of the title page.

  13. 7 CFR 735.300 - Warehouse receipt requirements.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 7 2014-01-01 2014-01-01 false Warehouse receipt requirements. 735.300 Section 735.300 Agriculture Regulations of the Department of Agriculture (Continued) FARM SERVICE AGENCY, DEPARTMENT OF AGRICULTURE REGULATIONS FOR WAREHOUSES REGULATIONS FOR THE UNITED STATES WAREHOUSE...

  14. 7 CFR 735.300 - Warehouse receipt requirements.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 7 2012-01-01 2012-01-01 false Warehouse receipt requirements. 735.300 Section 735.300 Agriculture Regulations of the Department of Agriculture (Continued) FARM SERVICE AGENCY, DEPARTMENT OF AGRICULTURE REGULATIONS FOR WAREHOUSES REGULATIONS FOR THE UNITED STATES WAREHOUSE...

  15. 7 CFR 735.302 - Paper warehouse receipts.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 7 2014-01-01 2014-01-01 false Paper warehouse receipts. 735.302 Section 735.302 Agriculture Regulations of the Department of Agriculture (Continued) FARM SERVICE AGENCY, DEPARTMENT OF AGRICULTURE REGULATIONS FOR WAREHOUSES REGULATIONS FOR THE UNITED STATES WAREHOUSE ACT Warehouse...

  16. 77 FR 21769 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-11

    ... application for a test marketing exemption (TME), and to publish in the Federal Register periodic status... Federal Register periodic status reports on the new chemicals under review and the receipt of NOCs to... Table I. of this unit, EPA provides the following information (to the extent that such information...

  17. 77 FR 3288 - Receipt of Request for Action

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-01-23

    ... Director of the Office of Nuclear Reactor Regulation (NRR). As provided by 10 CFR 2.206, appropriate action..., Deputy Director for Reactor Safety Programs, Office of Nuclear Reactor Regulation. [FR Doc. 2012-1213... No: 2012-1213] NUCLEAR REGULATORY COMMISSION [NRC-2012-0004] Receipt of Request for Action Notice...

  18. 7 CFR 1956.85 - Payments and receipts.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 14 2010-01-01 2009-01-01 true Payments and receipts. 1956.85 Section 1956.85 Agriculture Regulations of the Department of Agriculture (Continued) RURAL HOUSING SERVICE, RURAL BUSINESS...) PROGRAM REGULATIONS (CONTINUED) DEBT SETTLEMENT Debt Settlement-Farm Loan Programs and...

  19. 7 CFR 981.72 - Reports of receipts.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE ALMONDS GROWN IN CALIFORNIA Order Regulating Handling Records and Reports § 981.72 Reports of receipts. Each handler receiving almonds for his... for all almonds included in such report. The Board, after checking such reports in such manner as...

  20. 7 CFR 981.72 - Reports of receipts.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE ALMONDS GROWN IN CALIFORNIA Order Regulating Handling Records and Reports § 981.72 Reports of receipts. Each handler receiving almonds for his... for all almonds included in such report. The Board, after checking such reports in such manner as...

  1. 7 CFR 981.72 - Reports of receipts.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE ALMONDS GROWN IN CALIFORNIA Order Regulating Handling Records and Reports § 981.72 Reports of receipts. Each handler receiving almonds for his... for all almonds included in such report. The Board, after checking such reports in such manner as...

  2. 7 CFR 981.72 - Reports of receipts.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE ALMONDS GROWN IN CALIFORNIA Order Regulating Handling Records and Reports § 981.72 Reports of receipts. Each handler receiving almonds for his... for all almonds included in such report. The Board, after checking such reports in such manner as...

  3. 7 CFR 981.72 - Reports of receipts.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE ALMONDS GROWN IN CALIFORNIA Order Regulating Handling Records and Reports § 981.72 Reports of receipts. Each handler receiving almonds for his... for all almonds included in such report. The Board, after checking such reports in such manner as...

  4. 15 CFR 2016.1 - Action following receipt of petitions.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 15 Commerce and Foreign Trade 3 2013-01-01 2013-01-01 false Action following receipt of petitions. 2016.1 Section 2016.1 Commerce and Foreign Trade Regulations Relating to Foreign Trade Agreements... COUNTRY ELIGIBILITY OR DUTY-FREE TREATMENT UNDER THE ANDEAN TRADE PREFERENCE ACT (ATPA), AS AMENDED §...

  5. 15 CFR 2016.1 - Action following receipt of petitions.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 15 Commerce and Foreign Trade 3 2014-01-01 2014-01-01 false Action following receipt of petitions. 2016.1 Section 2016.1 Commerce and Foreign Trade Regulations Relating to Foreign Trade Agreements... COUNTRY ELIGIBILITY OR DUTY-FREE TREATMENT UNDER THE ANDEAN TRADE PREFERENCE ACT (ATPA), AS AMENDED §...

  6. 15 CFR 2016.1 - Action following receipt of petitions.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 15 Commerce and Foreign Trade 3 2011-01-01 2011-01-01 false Action following receipt of petitions. 2016.1 Section 2016.1 Commerce and Foreign Trade Regulations Relating to Foreign Trade Agreements... COUNTRY ELIGIBILITY OR DUTY-FREE TREATMENT UNDER THE ANDEAN TRADE PREFERENCE ACT (ATPA), AS AMENDED §...

  7. 48 CFR 1215.606-1 - Receipt and initial review.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... calendar days after receiving a proposal. (b) If the proposal meets the requirements at (FAR) 48 CFR 15.606-1(a), the agency contact point must acknowledge receipt within three calendar days after making the... point must return the proposal within three calendar days after making the determination. The...

  8. 20 CFR 655.23 - Receipt and processing of applications.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 20 Employees' Benefits 3 2011-04-01 2011-04-01 false Receipt and processing of applications. 655.23 Section 655.23 Employees' Benefits EMPLOYMENT AND TRAINING ADMINISTRATION, DEPARTMENT OF LABOR... Attestations for Temporary Employment in Occupations Other Than Agriculture or Registered Nursing in the...

  9. 32 CFR 1803.21 - Receipt, recording, and tasking.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 32 National Defense 6 2013-07-01 2013-07-01 false Receipt, recording, and tasking. 1803.21 Section 1803.21 National Defense Other Regulations Relating to National Defense NATIONAL COUNTERINTELLIGENCE CENTER PUBLIC REQUESTS FOR MANDATORY DECLASSIFICATION REVIEW OF CLASSIFIED INFORMATION PURSUANT...

  10. 32 CFR 1802.21 - Receipt, recording, and tasking.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 32 National Defense 6 2014-07-01 2014-07-01 false Receipt, recording, and tasking. 1802.21 Section 1802.21 National Defense Other Regulations Relating to National Defense NATIONAL COUNTERINTELLIGENCE CENTER CHALLENGES TO CLASSIFICATION OF DOCUMENTS BY AUTHORIZED HOLDERS PURSUANT TO SECTION 1.9...

  11. 32 CFR 1803.21 - Receipt, recording, and tasking.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 32 National Defense 6 2011-07-01 2011-07-01 false Receipt, recording, and tasking. 1803.21 Section 1803.21 National Defense Other Regulations Relating to National Defense NATIONAL COUNTERINTELLIGENCE CENTER PUBLIC REQUESTS FOR MANDATORY DECLASSIFICATION REVIEW OF CLASSIFIED INFORMATION PURSUANT...

  12. 32 CFR 1803.32 - Receipt, recording, and tasking.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 32 National Defense 6 2013-07-01 2013-07-01 false Receipt, recording, and tasking. 1803.32 Section 1803.32 National Defense Other Regulations Relating to National Defense NATIONAL COUNTERINTELLIGENCE CENTER PUBLIC REQUESTS FOR MANDATORY DECLASSIFICATION REVIEW OF CLASSIFIED INFORMATION PURSUANT...

  13. 32 CFR 1802.21 - Receipt, recording, and tasking.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 32 National Defense 6 2010-07-01 2010-07-01 false Receipt, recording, and tasking. 1802.21 Section 1802.21 National Defense Other Regulations Relating to National Defense NATIONAL COUNTERINTELLIGENCE CENTER CHALLENGES TO CLASSIFICATION OF DOCUMENTS BY AUTHORIZED HOLDERS PURSUANT TO SECTION 1.9...

  14. 32 CFR 1802.21 - Receipt, recording, and tasking.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 32 National Defense 6 2012-07-01 2012-07-01 false Receipt, recording, and tasking. 1802.21 Section 1802.21 National Defense Other Regulations Relating to National Defense NATIONAL COUNTERINTELLIGENCE CENTER CHALLENGES TO CLASSIFICATION OF DOCUMENTS BY AUTHORIZED HOLDERS PURSUANT TO SECTION 1.9...

  15. 32 CFR 1803.32 - Receipt, recording, and tasking.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 32 National Defense 6 2011-07-01 2011-07-01 false Receipt, recording, and tasking. 1803.32 Section 1803.32 National Defense Other Regulations Relating to National Defense NATIONAL COUNTERINTELLIGENCE CENTER PUBLIC REQUESTS FOR MANDATORY DECLASSIFICATION REVIEW OF CLASSIFIED INFORMATION PURSUANT...

  16. 32 CFR 1802.21 - Receipt, recording, and tasking.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 32 National Defense 6 2011-07-01 2011-07-01 false Receipt, recording, and tasking. 1802.21 Section 1802.21 National Defense Other Regulations Relating to National Defense NATIONAL COUNTERINTELLIGENCE CENTER CHALLENGES TO CLASSIFICATION OF DOCUMENTS BY AUTHORIZED HOLDERS PURSUANT TO SECTION 1.9...

  17. 32 CFR 1802.21 - Receipt, recording, and tasking.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 32 National Defense 6 2013-07-01 2013-07-01 false Receipt, recording, and tasking. 1802.21 Section 1802.21 National Defense Other Regulations Relating to National Defense NATIONAL COUNTERINTELLIGENCE CENTER CHALLENGES TO CLASSIFICATION OF DOCUMENTS BY AUTHORIZED HOLDERS PURSUANT TO SECTION 1.9...

  18. 27 CFR 478.125 - Record of receipt and disposition.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... Records § 478.125 Record of receipt and disposition. (a) Armor piercing ammunition sales by licensed collectors to nonlicensees. The sale or other disposition of armor piercing ammunition by licensed collectors... maintained in chronological order by date of sale or disposition of the armor piercing ammunition, and...

  19. 27 CFR 478.125 - Record of receipt and disposition.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... Records § 478.125 Record of receipt and disposition. (a) Armor piercing ammunition sales by licensed collectors to nonlicensees. The sale or other disposition of armor piercing ammunition by licensed collectors... maintained in chronological order by date of sale or disposition of the armor piercing ammunition, and...

  20. 27 CFR 478.125 - Record of receipt and disposition.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... Records § 478.125 Record of receipt and disposition. (a) Armor piercing ammunition sales by licensed collectors to nonlicensees. The sale or other disposition of armor piercing ammunition by licensed collectors... maintained in chronological order by date of sale or disposition of the armor piercing ammunition, and...

  1. 27 CFR 478.125 - Record of receipt and disposition.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... Records § 478.125 Record of receipt and disposition. (a) Armor piercing ammunition sales by licensed collectors to nonlicensees. The sale or other disposition of armor piercing ammunition by licensed collectors... maintained in chronological order by date of sale or disposition of the armor piercing ammunition, and...

  2. 27 CFR 478.125 - Record of receipt and disposition.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... Records § 478.125 Record of receipt and disposition. (a) Armor piercing ammunition sales by licensed collectors to nonlicensees. The sale or other disposition of armor piercing ammunition by licensed collectors... maintained in chronological order by date of sale or disposition of the armor piercing ammunition, and...

  3. 77 FR 5100 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-01

    ... application for a test marketing exemption (TME), and to publish in the Federal Register periodic status.... Section 5(h)(1) of TSCA authorizes EPA to allow persons, upon application, to manufacture (includes import... the Federal Register a notice of receipt of a PMN or an application for a TME and to publish in...

  4. 77 FR 10512 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-22

    ... application for a test marketing exemption (TME), and to publish in the Federal Register periodic status... initiating the activity. Section 5(h)(1) of TSCA authorizes EPA to allow persons, upon application, to...), EPA is required to publish in the Federal Register a notice of receipt of a PMN or an application...

  5. 76 FR 69723 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-09

    ... application for a test marketing exemption (TME), and to publish in the Federal Register periodic status.... Section 5(h)(1) of TSCA authorizes EPA to allow persons, upon application, to manufacture (includes import... in the Federal Register a notice of receipt of a PMN or an application for a TME and to publish...

  6. 77 FR 22780 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-17

    ... application for a test marketing exemption (TME), and to publish in the Federal Register periodic status... initiating the activity. Section 5(h)(1) of TSCA authorizes EPA to allow persons, upon application, to...), EPA is required to publish in the Federal Register a notice of receipt of a PMN or an application...

  7. 76 FR 21339 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-15

    ... Industries Inc (S) Dispersing (G) Substituted additive for alkanoic acid, organic and polymer with inorganic... Register a notice of receipt of a premanufacture notice (PMN) or an application for a test marketing...)(1) authorizes EPA to allow persons, upon application, to manufacture (includes import) or process...

  8. 77 FR 61600 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-10

    ..., Inc. organic polymer. dimethylethyl)-4- hydroxy-, 2- ethylhexyl ester. P-12-0542........ 09/04/2012 12... Register a notice of receipt of a premanufacture notice (PMN) or an application for a test marketing... TSCA authorizes EPA to allow persons, upon application, to manufacture (includes import) or process...

  9. 77 FR 24705 - Certain New Chemicals; Receipt and Status Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-25

    ... application for a test marketing exemption (TME), and to publish in the Federal Register periodic status.... Section 5(h)(1) of TSCA authorizes EPA to allow persons, upon application, to manufacture (includes import... the Federal Register a notice of receipt of a PMN or an application for a TME and to publish in...

  10. 26 CFR 1.199-3 - Domestic production gross receipts.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 26 Internal Revenue 3 2014-04-01 2014-04-01 false Domestic production gross receipts. 1.199-3 Section 1.199-3 Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY (CONTINUED) INCOME TAX (CONTINUED) INCOME TAXES (CONTINUED) Itemized Deductions for Individuals and Corporations (continued) § 1.199-3 Domestic production...

  11. 26 CFR 1.199-3 - Domestic production gross receipts.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 26 Internal Revenue 3 2012-04-01 2012-04-01 false Domestic production gross receipts. 1.199-3 Section 1.199-3 Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY (CONTINUED) INCOME TAX (CONTINUED) INCOME TAXES (CONTINUED) Itemized Deductions for Individuals and Corporations (continued) § 1.199-3 Domestic production...

  12. 15 CFR 2016.1 - Action following receipt of petitions.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 15 Commerce and Foreign Trade 3 2010-01-01 2010-01-01 false Action following receipt of petitions. 2016.1 Section 2016.1 Commerce and Foreign Trade Regulations Relating to Foreign Trade Agreements... COUNTRY ELIGIBILITY OR DUTY-FREE TREATMENT UNDER THE ANDEAN TRADE PREFERENCE ACT (ATPA), AS AMENDED §...

  13. 7 CFR 1030.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ...) Each handler that operates a pool plant shall report for each of its operations the following... protein (other solids), and the value of the somatic cell adjustment pursuant to § 1000.50(p), contained... fluid milk products and bulk fluid cream products from other pool plants; (ii) Receipts of other...

  14. 7 CFR 1033.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ...) Each handler that operates a pool plant pursuant to § 1033.7 shall report for each of its operations... solids-not-fat other than protein (other solids), and the value of the somatic cell adjustment pursuant... plants; (ii) Receipts of other source milk; and (iii) Inventories at the beginning and end of the...

  15. 7 CFR 1030.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ...) Each handler that operates a pool plant shall report for each of its operations the following... protein (other solids), and the value of the somatic cell adjustment pursuant to § 1000.50(p), contained... fluid milk products and bulk fluid cream products from other pool plants; (ii) Receipts of other...

  16. 7 CFR 1126.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... pool plant operator shall report for each of its operations the following information: (1) Product...), and the value of the somatic cell adjustment pursuant to § 1000.50(p) contained in or represented by... and bulk fluid cream products from other pool plants; (ii) Receipts of other source milk; and...

  17. 7 CFR 1033.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ...) Each handler that operates a pool plant pursuant to § 1033.7 shall report for each of its operations... solids-not-fat other than protein (other solids), and the value of the somatic cell adjustment pursuant... plants; (ii) Receipts of other source milk; and (iii) Inventories at the beginning and end of the...

  18. 7 CFR 1032.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ...) Each handler that operates a pool plant pursuant to § 1032.7 shall report for each of its operations... solids-not-fat other than protein (other solids), and the value of the somatic cell adjustment pursuant... plants; (ii) Receipts of other source milk; and (iii) Inventories at the beginning and end of the...

  19. 7 CFR 1032.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ...) Each handler that operates a pool plant pursuant to § 1032.7 shall report for each of its operations... solids-not-fat other than protein (other solids), and the value of the somatic cell adjustment pursuant... plants; (ii) Receipts of other source milk; and (iii) Inventories at the beginning and end of the...

  20. 7 CFR 1030.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ...) Each handler that operates a pool plant shall report for each of its operations the following... protein (other solids), and the value of the somatic cell adjustment pursuant to § 1000.50(p), contained... fluid milk products and bulk fluid cream products from other pool plants; (ii) Receipts of other...

  1. 7 CFR 1126.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... pool plant operator shall report for each of its operations the following information: (1) Product...), and the value of the somatic cell adjustment pursuant to § 1000.50(p) contained in or represented by... and bulk fluid cream products from other pool plants; (ii) Receipts of other source milk; and...

  2. 7 CFR 1126.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... pool plant operator shall report for each of its operations the following information: (1) Product...), and the value of the somatic cell adjustment pursuant to § 1000.50(p) contained in or represented by... and bulk fluid cream products from other pool plants; (ii) Receipts of other source milk; and...

  3. 32 CFR 1804.13 - Receipt, recording, and tasking.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... CENTER ACCESS BY HISTORICAL RESEARCHERS AND FORMER PRESIDENTIAL APPOINTEES PURSUANT TO SECTION 4.5 OF EXECUTIVE ORDER 12958 Requests for Historical Access § 1804.13 Receipt, recording, and tasking. The Information and Privacy Coordinator shall within ten (10) days record each request for historical...

  4. 11 CFR 104.8 - Uniform reporting of receipts.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... deducted per pay period. (c) Absent evidence to the contrary, any contribution made by check, money order... the candidate shall report the receipt of any bank loan obtained by the candidate or loan of money derived from an advance on a candidate's brokerage account, credit card, home equity line of credit,...

  5. 27 CFR 18.56 - Receipt of concentrate.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Receipt of concentrate. 18.56 Section 18.56 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS PRODUCTION OF VOLATILE FRUIT-FLAVOR CONCENTRATE Operations § 18.56...

  6. 27 CFR 18.56 - Receipt of concentrate.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2011-04-01 2011-04-01 false Receipt of concentrate. 18.56 Section 18.56 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS PRODUCTION OF VOLATILE FRUIT-FLAVOR CONCENTRATE Operations § 18.56...

  7. 75 FR 63196 - Endangered Species; Receipt of Applications for Permit

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-14

    ... Fish and Wildlife Service Endangered Species; Receipt of Applications for Permit AGENCY: Fish and.... Fish and Wildlife Service, invite the public to comment on the following applications to conduct..., Division of Management Authority, U.S. Fish and Wildlife Service, 4401 North Fairfax Drive, Room...

  8. 14 CFR 161.315 - Receipt of complete application.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 14 Aeronautics and Space 3 2011-01-01 2011-01-01 false Receipt of complete application. 161.315 Section 161.315 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) AIRPORTS NOTICE AND APPROVAL OF AIRPORT NOISE AND ACCESS RESTRICTIONS Notice, Review,...

  9. 14 CFR 161.315 - Receipt of complete application.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 14 Aeronautics and Space 3 2010-01-01 2010-01-01 false Receipt of complete application. 161.315 Section 161.315 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) AIRPORTS NOTICE AND APPROVAL OF AIRPORT NOISE AND ACCESS RESTRICTIONS Notice, Review,...

  10. 77 FR 38652 - Endangered Species; Receipt of Applications for Permit

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-28

    ... Fish and Wildlife Service Endangered Species; Receipt of Applications for Permit AGENCY: Fish and... certain activities with endangered species. With some exceptions, the Endangered Species Act (ESA... Endangered Species Act of 1973, as amended (16 U.S.C. 1531 et seq.), along with Executive Order...

  11. 76 FR 54480 - Endangered Species; Receipt of Applications for Permit

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-01

    ... Fish and Wildlife Service Endangered Species; Receipt of Applications for Permit AGENCY: Fish and... certain activities with endangered species. With some exceptions, the Endangered Species Act (ESA... responsibilities for affected species, section 10(a)(1)(A) of the Endangered Species Act of 1973, as amended (16...

  12. 76 FR 68205 - Endangered Species; Receipt of Applications for Permit

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-03

    ...; 96300-1671-0000-P5] Endangered Species; Receipt of Applications for Permit AGENCY: Fish and Wildlife... with endangered species. With some exceptions, the Endangered Species Act (ESA) prohibit activities...) of the Endangered Species Act of 1973, as amended (16 U.S.C. 1531 et seq.), require that we...

  13. 7 CFR 1033.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... with respect to the receipts and utilization of skim milk, butterfat, milk protein, other nonfat solids... SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE MIDEAST MARKETING... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, pounds...

  14. 7 CFR 1032.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... with respect to the receipts and utilization of skim milk, butterfat, milk protein, other nonfat solids... SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE CENTRAL MARKETING... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, pounds...

  15. 7 CFR 1124.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... other information with respect to the receipts and utilization of skim milk, butterfat, milk protein... SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE PACIFIC NORTHWEST... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, and pounds...

  16. 7 CFR 1250.518 - Receipts for payment of assessments.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... handler's written statement that the assessment on the lot of eggs covered by the invoice has been paid or... 7 Agriculture 10 2010-01-01 2010-01-01 false Receipts for payment of assessments. 1250.518 Section... RESEARCH AND PROMOTION Rules and Regulations Assessments, Collections, and Remittances § 1250.518...

  17. 7 CFR 1032.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... with respect to the receipts and utilization of skim milk, butterfat, milk protein, other nonfat solids... SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE CENTRAL MARKETING... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, pounds...

  18. 7 CFR 1124.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... other information with respect to the receipts and utilization of skim milk, butterfat, milk protein... SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE PACIFIC NORTHWEST... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, and pounds...

  19. 7 CFR 1033.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... with respect to the receipts and utilization of skim milk, butterfat, milk protein, other nonfat solids... SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE MIDEAST MARKETING... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, pounds...

  20. 7 CFR 1124.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... other information with respect to the receipts and utilization of skim milk, butterfat, milk protein... SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE PACIFIC NORTHWEST... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, and pounds...

  1. 7 CFR 1124.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... other information with respect to the receipts and utilization of skim milk, butterfat, milk protein... SERVICE (MARKETING AGREEMENTS AND ORDERS; MILK), DEPARTMENT OF AGRICULTURE MILK IN THE PACIFIC NORTHWEST... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, and pounds...

  2. 7 CFR 1124.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... other information with respect to the receipts and utilization of skim milk, butterfat, milk protein... SERVICE (MARKETING AGREEMENTS AND ORDERS; MILK), DEPARTMENT OF AGRICULTURE MILK IN THE PACIFIC NORTHWEST... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, and pounds...

  3. 7 CFR 1032.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... with respect to the receipts and utilization of skim milk, butterfat, milk protein, other nonfat solids... SERVICE (MARKETING AGREEMENTS AND ORDERS; MILK), DEPARTMENT OF AGRICULTURE MILK IN THE CENTRAL MARKETING... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, pounds...

  4. 7 CFR 1033.30 - Reports of receipts and utilization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... with respect to the receipts and utilization of skim milk, butterfat, milk protein, other nonfat solids... SERVICE (MARKETING AGREEMENTS AND ORDERS; MILK), DEPARTMENT OF AGRICULTURE MILK IN THE MIDEAST MARKETING... the following information: (1) Product pounds, pounds of butterfat, pounds of protein, pounds...

  5. Annotated chemical patent corpus: a gold standard for text mining.

    PubMed

    Akhondi, Saber A; Klenner, Alexander G; Tyrchan, Christian; Manchala, Anil K; Boppana, Kiran; Lowe, Daniel; Zimmermann, Marc; Jagarlapudi, Sarma A R P; Sayle, Roger; Kors, Jan A; Muresan, Sorel

    2014-01-01

    Exploring the chemical and biological space covered by patent applications is crucial in early-stage medicinal chemistry activities. Patent analysis can provide understanding of compound prior art, novelty checking, validation of biological assays, and identification of new starting points for chemical exploration. Extracting chemical and biological entities from patents through manual extraction by expert curators can take substantial amount of time and resources. Text mining methods can help to ease this process. To validate the performance of such methods, a manually annotated patent corpus is essential. In this study we have produced a large gold standard chemical patent corpus. We developed annotation guidelines and selected 200 full patents from the World Intellectual Property Organization, United States Patent and Trademark Office, and European Patent Office. The patents were pre-annotated automatically and made available to four independent annotator groups each consisting of two to ten annotators. The annotators marked chemicals in different subclasses, diseases, targets, and modes of action. Spelling mistakes and spurious line break due to optical character recognition errors were also annotated. A subset of 47 patents was annotated by at least three annotator groups, from which harmonized annotations and inter-annotator agreement scores were derived. One group annotated the full set. The patent corpus includes 400,125 annotations for the full set and 36,537 annotations for the harmonized set. All patents and annotated entities are publicly available at www.biosemantics.org.

  6. Annotated Chemical Patent Corpus: A Gold Standard for Text Mining

    PubMed Central

    Akhondi, Saber A.; Klenner, Alexander G.; Tyrchan, Christian; Manchala, Anil K.; Boppana, Kiran; Lowe, Daniel; Zimmermann, Marc; Jagarlapudi, Sarma A. R. P.; Sayle, Roger; Kors, Jan A.; Muresan, Sorel

    2014-01-01

    Exploring the chemical and biological space covered by patent applications is crucial in early-stage medicinal chemistry activities. Patent analysis can provide understanding of compound prior art, novelty checking, validation of biological assays, and identification of new starting points for chemical exploration. Extracting chemical and biological entities from patents through manual extraction by expert curators can take substantial amount of time and resources. Text mining methods can help to ease this process. To validate the performance of such methods, a manually annotated patent corpus is essential. In this study we have produced a large gold standard chemical patent corpus. We developed annotation guidelines and selected 200 full patents from the World Intellectual Property Organization, United States Patent and Trademark Office, and European Patent Office. The patents were pre-annotated automatically and made available to four independent annotator groups each consisting of two to ten annotators. The annotators marked chemicals in different subclasses, diseases, targets, and modes of action. Spelling mistakes and spurious line break due to optical character recognition errors were also annotated. A subset of 47 patents was annotated by at least three annotator groups, from which harmonized annotations and inter-annotator agreement scores were derived. One group annotated the full set. The patent corpus includes 400,125 annotations for the full set and 36,537 annotations for the harmonized set. All patents and annotated entities are publicly available at www.biosemantics.org. PMID:25268232

  7. Testing the Capture Magnet

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This image of a model capture magnet was taken after an experiment in a Mars simulation chamber at the University of Aarhus, Denmark. It has some dust on it, but not as much as that on the Mars Exploration Rover Spirit's capture magnet. The capture and filter magnets on both Mars Exploration Rovers were delivered by the magnetic properties team at the Center for Planetary Science, Copenhagen, Denmark.

  8. MixtureTree annotator: a program for automatic colorization and visual annotation of MixtureTree.

    PubMed

    Chen, Shu-Chuan; Ogata, Aaron

    2015-01-01

    The MixtureTree Annotator, written in JAVA, allows the user to automatically color any phylogenetic tree in Newick format generated from any phylogeny reconstruction program and output the Nexus file. By providing the ability to automatically color the tree by sequence name, the MixtureTree Annotator provides a unique advantage over any other programs which perform a similar function. In addition, the MixtureTree Annotator is the only package that can efficiently annotate the output produced by MixtureTree with mutation information and coalescent time information. In order to visualize the resulting output file, a modified version of FigTree is used. Certain popular methods, which lack good built-in visualization tools, for example, MEGA, Mesquite, PHY-FI, TreeView, treeGraph and Geneious, may give results with human errors due to either manually adding colors to each node or with other limitations, for example only using color based on a number, such as branch length, or by taxonomy. In addition to allowing the user to automatically color any given Newick tree by sequence name, the MixtureTree Annotator is the only method that allows the user to automatically annotate the resulting tree created by the MixtureTree program. The MixtureTree Annotator is fast and easy-to-use, while still allowing the user full control over the coloring and annotating process.

  9. Non-Formal Education and Radio: A Selected, Annotated Bibliography. Annotated Bibliography #14.

    ERIC Educational Resources Information Center

    Vergeldt, Vicki; And Others

    Materials concerning the use of radio and mass communications for non-formal education and development are listed in a selected annotated bibliography, intended for those actively involved in non-formal education and development. Three sections contain annotated entries (which range from 1972-1983), each of which includes source information and…

  10. AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments

    PubMed Central

    Zheng, Jie; Stoyanovich, Julia; Manduchi, Elisabetta; Liu, Junmin; Stoeckert, Christian J.

    2011-01-01

    The ever-increasing scale of biological data sets, particularly those arising in the context of high-throughput technologies, requires the development of rich data exploration tools. In this article, we present AnnotCompute, an information discovery platform for repositories of functional genomics experiments such as ArrayExpress. Our system leverages semantic annotations of functional genomics experiments with controlled vocabulary and ontology terms, such as those from the MGED Ontology, to compute conceptual dissimilarities between pairs of experiments. These dissimilarities are then used to support two types of exploratory analysis—clustering and query-by-example. We show that our proposed dissimilarity measures correspond to a user's intuition about conceptual dissimilarity, and can be used to support effective query-by-example. We also evaluate the quality of clustering based on these measures. While AnnotCompute can support a richer data exploration experience, its effectiveness is limited in some cases, due to the quality of available annotations. Nonetheless, tools such as AnnotCompute may provide an incentive for richer annotations of experiments. Code is available for download at http://www.cbil.upenn.edu/downloads/AnnotCompute. Database URL: http://www.cbil.upenn.edu/annotCompute/ PMID:22190598

  11. Spatial capture-recapture

    USGS Publications Warehouse

    Royle, J. Andrew; Chandler, Richard B.; Sollmann, Rahel; Gardner, Beth

    2013-01-01

    Spatial Capture-Recapture provides a revolutionary extension of traditional capture-recapture methods for studying animal populations using data from live trapping, camera trapping, DNA sampling, acoustic sampling, and related field methods. This book is a conceptual and methodological synthesis of spatial capture-recapture modeling. As a comprehensive how-to manual, this reference contains detailed examples of a wide range of relevant spatial capture-recapture models for inference about population size and spatial and temporal variation in demographic parameters. Practicing field biologists studying animal populations will find this book to be a useful resource, as will graduate students and professionals in ecology, conservation biology, and fisheries and wildlife management.

  12. Improved structural annotation of protein-coding genes in the Meloidogyne hapla genome using RNA-Seq.

    PubMed

    Guo, Yuelong; Bird, David McK; Nielsen, Dahlia M

    2014-01-01

    As high-throughput cDNA sequencing (RNA-Seq) is increasingly applied to hypothesis-driven biological studies, the prediction of protein coding genes based on these data are usurping strictly in silico approaches. Compared with computationally derived gene predictions, structural annotation is more accurate when based on biological evidence, particularly RNA-Seq data. Here, we refine the current genome annotation for the Meloidogyne hapla genome utilizing RNA-Seq data. Published structural annotation defines 14 420 protein-coding genes in the M. hapla genome. Of these, 25% (3751) were found to exhibit some incongruence with RNA-Seq data. Manual annotation enabled these discrepancies to be resolved. Our analysis revealed 544 new gene models that were missing from the prior annotation. Additionally, 1457 transcribed regions were newly identified on the ends of as-yet-unjoined contigs. We also searched for trans-spliced leaders, and based on RNA-Seq data, identified genes that appear to be trans-spliced. Four 22-bp trans-spliced leaders were identified using our pipeline, including the known trans-spliced leader, which is the M. hapla ortholog of SL1. In silico predictions of trans-splicing were validated by comparison with earlier results derived from an independent cDNA library constructed to capture trans-spliced transcripts. The new annotation, which we term HapPep5, is publically available at www.hapla.org.

  13. Annotating nonspecific SAGE tags with microarray data.

    PubMed

    Ge, Xijin; Jung, Yong-Chul; Wu, Qingfa; Kibbe, Warren A; Wang, San Ming

    2006-01-01

    SAGE (serial analysis of gene expression) detects transcripts by extracting short tags from the transcripts. Because of the limited length, many SAGE tags are shared by transcripts from different genes. Relying on sequence information in the general gene expression database has limited power to solve this problem due to the highly heterogeneous nature of the deposited sequences. Considering that the complexity of gene expression at a single tissue level should be much simpler than that in the general expression database, we reasoned that by restricting gene expression to tissue level, the accuracy of gene annotation for the nonspecific SAGE tags should be significantly improved. To test the idea, we developed a tissue-specific SAGE annotation database based on microarray data (). This database contains microarray expression information represented as UniGene clusters for 73 normal human tissues and 18 cancer tissues and cell lines. The nonspecific SAGE tag is first matched to the database by the same tissue type used by both SAGE and microarray analysis; then the multiple UniGene clusters assigned to the nonspecific SAGE tag are searched in the database under the matched tissue type. The UniGene cluster presented solely or at higher expression levels in the database is annotated to represent the specific gene for the nonspecific SAGE tags. The accuracy of gene annotation by this database was largely confirmed by experimental data. Our study shows that microarray data provide a useful source for annotating the nonspecific SAGE tags.

  14. MPEG-7 based video annotation and browsing

    NASA Astrophysics Data System (ADS)

    Hoeynck, Michael; Auweiler, Thorsten; Wellhausen, Jens

    2003-11-01

    The huge amount of multimedia data produced worldwide requires annotation in order to enable universal content access and to provide content-based search-and-retrieval functionalities. Since manual video annotation can be time consuming, automatic annotation systems are required. We review recent approaches to content-based indexing and annotation of videos for different kind of sports and describe our approach to automatic annotation of equestrian sports videos. We especially concentrate on MPEG-7 based feature extraction and content description, where we apply different visual descriptors for cut detection. Further, we extract the temporal positions of single obstacles on the course by analyzing MPEG-7 edge information. Having determined single shot positions as well as the visual highlights, the information is jointly stored with meta-textual information in an MPEG-7 description scheme. Based on this information, we generate content summaries which can be utilized in a user-interface in order to provide content-based access to the video stream, but further for media browsing on a streaming server.

  15. Gene and alternative splicing annotation with AIR

    PubMed Central

    Florea, Liliana; Di Francesco, Valentina; Miller, Jason; Turner, Russell; Yao, Alison; Harris, Michael; Walenz, Brian; Mobarry, Clark; Merkulov, Gennady V.; Charlab, Rosane; Dew, Ian; Deng, Zuoming; Istrail, Sorin; Li, Peter; Sutton, Granger

    2005-01-01

    Designing effective and accurate tools for identifying the functional and structural elements in a genome remains at the frontier of genome annotation owing to incompleteness and inaccuracy of the data, limitations in the computational models, and shifting paradigms in genomics, such as alternative splicing. We present a methodology for the automated annotation of genes and their alternatively spliced mRNA transcripts based on existing cDNA and protein sequence evidence from the same species or projected from a related species using syntenic mapping information. At the core of the method is the splice graph, a compact representation of a gene, its exons, introns, and alternatively spliced isoforms. The putative transcripts are enumerated from the graph and assigned confidence scores based on the strength of sequence evidence, and a subset of the high-scoring candidates are selected and promoted into the annotation. The method is highly selective, eliminating the unlikely candidates while retaining 98% of the high-quality mRNA evidence in well-formed transcripts, and produces annotation that is measurably more accurate than some evidence-based gene sets. The process is fast, accurate, and fully automated, and combines the traditionally distinct gene annotation and alternative splicing detection processes in a comprehensive and systematic way, thus considerably aiding in the ensuing manual curation efforts. PMID:15632090

  16. Automated analysis and annotation of basketball video

    NASA Astrophysics Data System (ADS)

    Saur, Drew D.; Tan, Yap-Peng; Kulkarni, Sanjeev R.; Ramadge, Peter J.

    1997-01-01

    Automated analysis and annotation of video sequences are important for digital video libraries, content-based video browsing and data mining projects. A successful video annotation system should provide users with useful video content summary in a reasonable processing time. Given the wide variety of video genres available today, automatically extracting meaningful video content for annotation still remains hard by using current available techniques. However, a wide range video has inherent structure such that some prior knowledge about the video content can be exploited to improve our understanding of the high-level video semantic content. In this paper, we develop tools and techniques for analyzing structured video by using the low-level information available directly from MPEG compressed video. Being able to work directly in the video compressed domain can greatly reduce the processing time and enhance storage efficiency. As a testbed, we have developed a basketball annotation system which combines the low-level information extracted from MPEG stream with the prior knowledge of basketball video structure to provide high level content analysis, annotation and browsing for events such as wide- angle and close-up views, fast breaks, steals, potential shots, number of possessions and possession times. We expect our approach can also be extended to structured video in other domains.

  17. Jupiter: its captured satellites.

    PubMed

    Bailey, J M

    1971-08-27

    Because of the small size and irregular orbits of the seven outer satellites of Jupiter, it is often assumed that they were derived by capture. The conditions whereby Jupiter can capture satellites have therefore been examined. Relationships derived on the basis of the three-body problem for planets in elliptical orbits enable the dimensions of the capture orbits around Jupiter to be calculated. It is found that Jupiter may capture satellites through the inner Lagrangian point when at perihelion or at aphelion. Captures at perihelion should give rise to satellites in direct orbits of 11.48 x 10(6) kilometers and capture at aphelion to retrograde orbits of 21.7 x 10(6) kilometers. The correspondence with the seven outer satellites suggests that Jupiter VI, VIl, and X in direct orbits at 11.47, 11.74, and 11.85 x 10(6) kilometers were captured at Jupiter perihelion, whereas Jupiter VIII, IX, XI, and XII in retrograde orbits of 23.5, 23.7, 22.5, and 21.2 x 10(6) kilometers were captured when Jupiter was at aphelion. Examination of the precapture orbits indicates that the seven outer satellites were derived from the asteroid belt.

  18. Demonstrating carbon capture

    SciTech Connect

    Qader, A.; Hooper, B.; Stevens, G.

    2009-11-15

    Australia is at the forefront of advancing CCS technology. The CO2CRC's H3 (Post-combustion) and Mulgrave (pre-combustion) capture projects are outlined. The capture technologies for these 2 demonstration projects are described. 1 map., 2 photos.

  19. Annotating images by mining image search results.

    PubMed

    Wang, Xin-Jing; Zhang, Lei; Li, Xirong; Ma, Wei-Ying

    2008-11-01

    Although it has been studied for years by the computer vision and machine learning communities, image annotation is still far from practical. In this paper, we propose a novel attempt at model-free image annotation, which is a data-driven approach that annotates images by mining their search results. Some 2.4 million images with their surrounding text are collected from a few photo forums to support this approach. The entire process is formulated in a divide-and-conquer framework where a query keyword is provided along with the uncaptioned image to improve both the effectiveness and efficiency. This is helpful when the collected data set is not dense everywhere. In this sense, our approach contains three steps: 1) the search process to discover visually and semantically similar search results, 2) the mining process to identify salient terms from textual descriptions of the search results, and 3) the annotation rejection process to filter out noisy terms yielded by Step 2. To ensure real-time annotation, two key techniques are leveraged-one is to map the high-dimensional image visual features into hash codes, the other is to implement it as a distributed system, of which the search and mining processes are provided as Web services. As a typical result, the entire process finishes in less than 1 second. Since no training data set is required, our approach enables annotating with unlimited vocabulary and is highly scalable and robust to outliers. Experimental results on both real Web images and a benchmark image data set show the effectiveness and efficiency of the proposed algorithm. It is also worth noting that, although the entire approach is illustrated within the divide-and conquer framework, a query keyword is not crucial to our current implementation. We provide experimental results to prove this.

  20. Improving Automated Annotation of Benthic Survey Images Using Wide-band Fluorescence

    PubMed Central

    Beijbom, Oscar; Treibitz, Tali; Kline, David I.; Eyal, Gal; Khen, Adi; Neal, Benjamin; Loya, Yossi; Mitchell, B. Greg; Kriegman, David

    2016-01-01

    Large-scale imaging techniques are used increasingly for ecological surveys. However, manual analysis can be prohibitively expensive, creating a bottleneck between collected images and desired data-products. This bottleneck is particularly severe for benthic surveys, where millions of images are obtained each year. Recent automated annotation methods may provide a solution, but reflectance images do not always contain sufficient information for adequate classification accuracy. In this work, the FluorIS, a low-cost modified consumer camera, was used to capture wide-band wide-field-of-view fluorescence images during a field deployment in Eilat, Israel. The fluorescence images were registered with standard reflectance images, and an automated annotation method based on convolutional neural networks was developed. Our results demonstrate a 22% reduction of classification error-rate when using both images types compared to only using reflectance images. The improvements were large, in particular, for coral reef genera Platygyra, Acropora and Millepora, where classification recall improved by 38%, 33%, and 41%, respectively. We conclude that convolutional neural networks can be used to combine reflectance and fluorescence imagery in order to significantly improve automated annotation accuracy and reduce the manual annotation bottleneck. PMID:27021133

  1. AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments.

    PubMed

    Zheng, Jie; Stoyanovich, Julia; Manduchi, Elisabetta; Liu, Junmin; Stoeckert, Christian J

    2011-01-01

    The ever-increasing scale of biological data sets, particularly those arising in the context of high-throughput technologies, requires the development of rich data exploration tools. In this article, we present AnnotCompute, an information discovery platform for repositories of functional genomics experiments such as ArrayExpress. Our system leverages semantic annotations of functional genomics experiments with controlled vocabulary and ontology terms, such as those from the MGED Ontology, to compute conceptual dissimilarities between pairs of experiments. These dissimilarities are then used to support two types of exploratory analysis-clustering and query-by-example. We show that our proposed dissimilarity measures correspond to a user's intuition about conceptual dissimilarity, and can be used to support effective query-by-example. We also evaluate the quality of clustering based on these measures. While AnnotCompute can support a richer data exploration experience, its effectiveness is limited in some cases, due to the quality of available annotations. Nonetheless, tools such as AnnotCompute may provide an incentive for richer annotations of experiments. Database URL: http://www.cbil.upenn.edu/annotCompute/

  2. Solar Tutorial and Annotation Resource (STAR)

    NASA Astrophysics Data System (ADS)

    Showalter, C.; Rex, R.; Hurlburt, N. E.; Zita, E. J.

    2009-12-01

    We have written a software suite designed to facilitate solar data analysis by scientists, students, and the public, anticipating enormous datasets from future instruments. Our “STAR" suite includes an interactive learning section explaining 15 classes of solar events. Users learn software tools that exploit humans’ superior ability (over computers) to identify many events. Annotation tools include time slice generation to quantify loop oscillations, the interpolation of event shapes using natural cubic splines (for loops, sigmoids, and filaments) and closed cubic splines (for coronal holes). Learning these tools in an environment where examples are provided prepares new users to comfortably utilize annotation software with new data. Upon completion of our tutorial, users are presented with media of various solar events and asked to identify and annotate the images, to test their mastery of the system. Goals of the project include public input into the data analysis of very large datasets from future solar satellites, and increased public interest and knowledge about the Sun. In 2010, the Solar Dynamics Observatory (SDO) will be launched into orbit. SDO’s advancements in solar telescope technology will generate a terabyte per day of high-quality data, requiring innovation in data management. While major projects develop automated feature recognition software, so that computers can complete much of the initial event tagging and analysis, still, that software cannot annotate features such as sigmoids, coronal magnetic loops, coronal dimming, etc., due to large amounts of data concentrated in relatively small areas. Previously, solar physicists manually annotated these features, but with the imminent influx of data it is unrealistic to expect specialized researchers to examine every image that computers cannot fully process. A new approach is needed to efficiently process these data. Providing analysis tools and data access to students and the public have proven

  3. IMPACCT: Carbon Capture Technology

    SciTech Connect

    2012-01-01

    IMPACCT Project: IMPACCT’s 15 projects seek to develop technologies for existing coal-fired power plants that will lower the cost of carbon capture. Short for “Innovative Materials and Processes for Advanced Carbon Capture Technologies,” the IMPACCT Project is geared toward minimizing the cost of removing carbon dioxide (CO2) from coal-fired power plant exhaust by developing materials and processes that have never before been considered for this application. Retrofitting coal-fired power plants to capture the CO2 they produce would enable greenhouse gas reductions without forcing these plants to close, shifting away from the inexpensive and abundant U.S. coal supply.

  4. Receipt of disability through an outreach program for homeless veterans.

    PubMed

    Chen, Joyce H; Rosenheck, Robert A; Kasprow, Wesley J; Greenberg, Greg

    2007-05-01

    Receipt of public support payments is associated with beneficial outcomes for homeless people with mental illness. The purpose of this study was to identify factors associated with receipt of Department of Veterans Affairs (VA) pension and compensation benefits among homeless veterans after their initial contact with the VA national homeless outreach program. We examined data for 5731 veterans who were contacted by the program during the first 3 months of fiscal year 2003 and who were not receiving VA benefits, and we documented their benefit status over a minimum of 18 months. A limited number of veterans (15%) were subsequently awarded benefits; they were more likely to have reported recent use of VA services and a greater number of medical and psychiatric problems at the time of outreach. Findings suggest that VA benefit outreach efforts may gain from increased focus on those most vulnerable and most on the outskirts of the VA system.

  5. Development and Evaluation of the Campground Receipt Study.

    DTIC Science & Technology

    1982-04-01

    for converting U. S. customary units of measure- ment to metric (SI) units is presented on page 3. 4 precluded any conclusive analysis of the impacts of...concerning impacts of the energy crisis on recreation visitation, consideration was given to using historical campground fee receipts as an...at least a point of departure for the determination or prediction of impacts on campsites at various use levels. Bloor also constructed camping

  6. Military Retirement, Concurrent Receipt, and Related Major Legislative Issues

    DTIC Science & Technology

    2008-02-12

    Order Code RL33449 Military Retirement, Concurrent Receipt, and Related Major Legislative Issues Updated February 12, 2008 Charles A. Henning...recent legislative activity involves whether some or all military retirees should be allowed to receive both military retired pay and any VA disability...can first receive retired pay from 60 to 55. The arguments in favor of these benefit increases have been equally strong. Proponents suggest that even

  7. Death Education. An Annotated Bibliography for Teachers.

    ERIC Educational Resources Information Center

    Lockard, Bonnie Elam, Comp.

    This annotated bibliography contains resources for teachers to use in the preparation of curricula for death education for children in grades K-12. Section one contains printed resources for teachers. Many of these resources offer more comprehensive guides for death education and materials. Section two describes 70 books for students in grade K-12…

  8. The Mentally Retarded Offender: Annotated Bibliography.

    ERIC Educational Resources Information Center

    Schilit, Jeffrey; And Others

    An annotated bibliography of approximately 150 books and articles on the mentally retarded offender as well as 30 nonannotated entries are provided. Topics covered include such areas as characteristics of mentally retarded delinquents, rehabilitation of the retarded offender, community services for retarded persons, rights of the mentally…

  9. College Students in Transition: An Annotated Bibliography

    ERIC Educational Resources Information Center

    Foote, Stephanie M., Ed.; Hinkle, Sara M., Ed.; Kranzow, Jeannine, Ed.; Pistilli, Matthew D., Ed.; Miles, LaTonya Rease, Ed.; Simmons, Jannell G., Ed.

    2013-01-01

    The transition from high school to college is an important milestone, but it is only one of many steps in the journey through higher education. This volume is an annotated bibliography of the emerging literature examining the many other transitions students make beyond the first year, including the sophomore year, the transfer experience, and the…

  10. Male-Female Sexuality: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Wilson, Janice

    This annotated bibliography contains over 500 sources on the historical and contemporary development and expression of male and female sexuality. There are 68 topic headings which provide easy access for subject areas. A major portion of the bibliography is devoted to contemporary male-female sexuality. These materials consist of research findings…

  11. An Annotated Bibliography on Movement Education.

    ERIC Educational Resources Information Center

    Rizzitiello, Theresa, G.

    This bibliography is a collection of selected resources significant to a deeper understanding of the many aspects and definitions of movement education. The one hundred seventy-three annotations are arranged and ordered in a pattern to reflect an overview of both theory and practice, the latter examined under the headings of basic movement,…

  12. Sexually Transmitted Diseases: A Selective, Annotated Bibliography.

    ERIC Educational Resources Information Center

    Planned Parenthood Federation of America, Inc., New York, NY. Education Dept.

    This document contains a reference sheet and an annotated bibliography concerned with sexually transmitted diseases (STD). The reference sheet provides a brief, accurate overview of STDs which includes both statistical and background information. The bibliography contains 83 entries, listed alphabetically, that deal with STDs. Books and articles…

  13. Teaching Creative Writing: A Selective, Annotated Bibliography.

    ERIC Educational Resources Information Center

    Bishop, Wendy; And Others

    Focusing on pedagogical issues in creative writing, this annotated bibliography reviews 149 books, articles, and dissertations in the fields of creative writing and composition, and, selectively, feminist and literary theory. Anthologies of original writing and reference books are not included. (MM)

  14. Bibliografia de Aztlan: An Annotated Chicano Bibliography.

    ERIC Educational Resources Information Center

    Barrios, Ernie, Ed.

    More than 300 books and articles published from 1920 to 1971 are reviewed in this annotated bibliography of literature on the Chicano. The citations and reviews are categorized by subject area and deal with contemporary Chicano history, education, health, history of Mexico, literature, native Americans, philosophy, political science, pre-Columbian…

  15. Annotated Bibliography of Special Education Instructional Materials.

    ERIC Educational Resources Information Center

    Cook, Iva Dean, Comp.

    The annotated bibliography lists approximately 900 commercially prepared materials available for statewide distribution from the West Virginia College of Graduate Studies Special Education Instructional Materials Center (WEIMC) for use in teaching educable (EMR) and trainable mentally retarded (TMR) students. Materials are grouped under subject…

  16. Children and Poetry: A Selective, Annotated Bibliography.

    ERIC Educational Resources Information Center

    Haviland, Virginia; Smith, William Jay

    This annotated bibliography of over 120 books was compiled to call attention to poetry for children that is both pleasing and rewarding. Omitted are traditional materials such as Mother Goose rhymes, textbooks, and collections designed especially for the classroom. Sample illustrations from the books noted and lines from poems are reproduced…

  17. Middle Level Education: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Totten, Samuel; And Others

    Developed as a reference tool for teachers, administrators, researchers, parents, and others interested in middle level education, this annotated bibliography of 1,757 entries focuses on practical aspects of middle level education and on research related to adolescence and middle level practices. Following an introduction and discussion of…

  18. Health Communication and Literacy: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Beveridge, Jennifer

    This annotated bibliography lists publications and World Wide Web sites dealing with health communication and literacy. The 51 publications, which were all published between 1982 and 1998, contain information about and/or for use in the following areas: assessment, assessment tools, elderly adults, empowerment, maternal and child health, patient…

  19. Elementary Language Arts: Authorized Resources Annotated List.

    ERIC Educational Resources Information Center

    Alberta Dept. of Education, Edmonton. Curriculum Standards Branch.

    This comprehensive, annotated resource list is designed to assist educators in selecting language arts resources for the elementary classroom. The authorized resources are listed under two main headings: series and individual resources. The series are listed alphabetically under each grade level. The individual resources are often authorized…

  20. Elementary Science: Authorized Resources Annotated List.

    ERIC Educational Resources Information Center

    Alberta Dept. of Education, Edmonton. Curriculum Standards Branch.

    This comprehensive annotated resource list is designed to assist in the selection of science resources for elementary classrooms. This guide is organized by grade level, and within that heading by series and topic. Following the lists for individual grades is a list of elementary science resources, which are not topic specific, authorized for…

  1. People: Annotated Multiethnic Bibliography K-12.

    ERIC Educational Resources Information Center

    Gilmore, Dolores D., Comp.; Petrie, Kenneth, Comp.

    This annotated bibliography has been compiled to assist personnel in the selection of multiethnic media for schools. The bibliography includes sections entitled "Asian Americans,""Jewish Americans,""Mexican Americans,""Native Americans,""Puerto Rican Americans,""Other Hyphenated Americans," and "All Americans (Multiethnic)." The entries for the…

  2. Skin Cancer Education Materials: Selected Annotations.

    ERIC Educational Resources Information Center

    National Cancer Inst. (NIH), Bethesda, MD.

    This annotated bibliography presents 85 entries on a variety of approaches to cancer education. The entries are grouped under three broad headings, two of which contain smaller sub-divisions. The first heading, Public Education, contains prevention and general information, and non-print materials. The second heading, Professional Education,…

  3. Document Delivery: An Annotated Selective Bibliography.

    ERIC Educational Resources Information Center

    Khalil, Mounir A.; Katz, Suzanne R.

    1992-01-01

    Presents a selective annotated bibliography of 61 items that deal with topics related to document delivery, including networks; hypertext; interlibrary loan; computer security; electronic publishing; copyright; online catalogs; resource sharing; electronic mail; electronic libraries; optical character recognition; microcomputers; liability issues;…

  4. Parenting: An Annotated Bibliography, 1965-1987.

    ERIC Educational Resources Information Center

    Feinberg, Sandra; And Others

    This annotated bibliography on parenting resources is designed to assist parents and those who work with them to locate books on the many and complex topics that affect family life. The materials included encompass the various stages of parenting, from pregnancy and childbirth through the parenting of adult children. The many topics covered…

  5. Communication and Politics: A Selected, Annotated Bibliography.

    ERIC Educational Resources Information Center

    Kaid, Lynda Lee; And Others

    Noting that the study of communication in political settings is an increasingly popular and important area of teaching and research in many disciplines, this 51-item annotated bibliography reflects the interdisciplinary nature of the field and is designed to incorporate varying approaches to the subject matter. With few exceptions, the books and…

  6. Ontological Annotation with WordNet

    SciTech Connect

    Sanfilippo, Antonio P.; Tratz, Stephen C.; Gregory, Michelle L.; Chappell, Alan R.; Whitney, Paul D.; Posse, Christian; Paulson, Patrick R.; Baddeley, Bob; Hohimer, Ryan E.; White, Amanda M.

    2006-06-06

    Semantic Web applications require robust and accurate annotation tools that are capable of automating the assignment of ontological classes to words in naturally occurring text (ontological annotation). Most current ontologies do not include rich lexical databases and are therefore not easily integrated with word sense disambiguation algorithms that are needed to automate ontological annotation. WordNet provides a potentially ideal solution to this problem as it offers a highly structured lexical conceptual representation that has been extensively used to develop word sense disambiguation algorithms. However, WordNet has not been designed as an ontology, and while it can be easily turned into one, the result of doing this would present users with serious practical limitations due to the great number of concepts (synonym sets) it contains. Moreover, mapping WordNet to an existing ontology may be difficult and requires substantial labor. We propose to overcome these limitations by developing an analytical platform that (1) provides a WordNet-based ontology offering a manageable and yet comprehensive set of concept classes, (2) leverages the lexical richness of WordNet to give an extensive characterization of concept class in terms of lexical instances, and (3) integrates a class recognition algorithm that automates the assignment of concept classes to words in naturally occurring text. The ensuing framework makes available an ontological annotation platform that can be effectively integrated with intelligence analysis systems to facilitate evidence marshaling and sustain the creation and validation of inference models.

  7. Environment and the Community: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Department of Housing and Urban Development, Washington, DC.

    Three hundred and nine citations of books, reports, and articles dating from 1964 to 1971 are included in this annotated bibliography, intended as a selection tool for concerned citizens, architects, builders, and city planners emphasizing the environment of American cities and communities. It is topically arranged into sixteen broad sections with…

  8. Science Fiction Criticism: An Annotated Checklist.

    ERIC Educational Resources Information Center

    Clareson, Thomas

    An expansion of the list published in "Extrapolation" between May 1970 and May 1971, this book contains approximately 800 entries of science fiction criticism. Divided into special categories, all items are annotated and explicitly discuss science fiction. The nine categories of science fiction criticism are Literary Studies; Book Reviews; the…

  9. Higher Education Literature: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    White, Jane N., Ed.; Burnett, Collins W., Ed.

    An annotated bibliography on higher education is presented that is limited to programs and phenomena in two- and four-year accredited degree-granting colleges and universities. The following sections and topics are covered: (1) Historical Background and Nature and Scope of American Higher Education (ancient, medieval, and U.S. education,…

  10. Evaluating Image Browsers Using Structured Annotation.

    ERIC Educational Resources Information Center

    Muller, Wolfgang; Marchand-Mailet, Stephane; Muller, Henning; Squire, David McG.; Pun, Thierry

    2001-01-01

    Addresses the problem of benchmarking image browsers. Existence of different search paradigms for image browsers makes it difficult to compare them. Currently, the only admissible evaluation method involves conducting large-scale user studies. An automatic image browser benchmark is proposed that uses structured text annotation of the image…

  11. Teleconferencing, an annotated bibliography, volume 3

    NASA Technical Reports Server (NTRS)

    Shervis, K.

    1971-01-01

    In this annotated and indexed listing of works on teleconferencing, emphasis has been placed upon teleconferencing as real-time, two way audio communication with or without visual aids. However, works on the use of television in two-way or multiway nets, data transmission, regional communications networks and on telecommunications in general are also included.

  12. Human object annotation for surveillance video forensics

    NASA Astrophysics Data System (ADS)

    Fraz, Muhammad; Zafar, Iffat; Tzanidou, Giounona; Edirisinghe, Eran A.; Sarfraz, Muhammad Saquib

    2013-10-01

    A system that can automatically annotate surveillance video in a manner useful for locating a person with a given description of clothing is presented. Each human is annotated based on two appearance features: primary colors of clothes and the presence of text/logos on clothes. The annotation occurs after a robust foreground extraction stage employing a modified Gaussian mixture model-based approach. The proposed pipeline consists of a preprocessing stage where color appearance of an image is improved using a color constancy algorithm. In order to annotate color information for human clothes, we use the color histogram feature in HSV space and find local maxima to extract dominant colors for different parts of a segmented human object. To detect text/logos on clothes, we begin with the extraction of connected components of enhanced horizontal, vertical, and diagonal edges in the frames. These candidate regions are classified as text or nontext on the basis of their local energy-based shape histogram features. Further, to detect humans, a novel technique has been proposed that uses contourlet transform-based local binary pattern (CLBP) features. In the proposed method, we extract the uniform direction invariant LBP feature descriptor for contourlet transformed high-pass subimages from vertical and diagonal directional bands. In the final stage, extracted CLBP descriptors are classified by a trained support vector machine. Experimental results illustrate the superiority of our method on large-scale surveillance video data.

  13. Annotated Bibliography of EDGE2D Use

    SciTech Connect

    J.D. Strachan and G. Corrigan

    2005-06-24

    This annotated bibliography is intended to help EDGE2D users, and particularly new users, find existing published literature that has used EDGE2D. Our idea is that a person can find existing studies which may relate to his intended use, as well as gain ideas about other possible applications by scanning the attached tables.

  14. Revenue Producing Athletes: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Ervin, Leroy; And Others

    An annotated bibliography on revenue producing sports is presented, with attention to: Proposition 48, exploitation of athletes, legal proceedings, research related to athletes and academic performance, psychological characteristics of athletes, and counseling programs for athletes. Introductions to each of the six topics are included. The section…

  15. Annotated bibliography of psychomotor testing. Technical report

    SciTech Connect

    Ervin, C.

    1987-03-01

    An annotated bibliography of 67 publications in the field of psychomotor testing has been prepared. The collection includes technical reports, journal articles, presented at scientific meetings, books and conference proceedings. The publications were assembled as preliminary work in the development of a dexterity test battery designed to measure the effects of chemical-defense-treatment drugs.

  16. Statistical mechanics of ontology based annotations

    NASA Astrophysics Data System (ADS)

    Hoyle, David C.; Brass, Andrew

    2016-01-01

    We present a statistical mechanical theory of the process of annotating an object with terms selected from an ontology. The term selection process is formulated as an ideal lattice gas model, but in a highly structured inhomogeneous field. The model enables us to explain patterns recently observed in real-world annotation data sets, in terms of the underlying graph structure of the ontology. By relating the external field strengths to the information content of each node in the ontology graph, the statistical mechanical model also allows us to propose a number of practical metrics for assessing the quality of both the ontology, and the annotations that arise from its use. Using the statistical mechanical formalism we also study an ensemble of ontologies of differing size and complexity; an analysis not readily performed using real data alone. Focusing on regular tree ontology graphs we uncover a rich set of scaling laws describing the growth in the optimal ontology size as the number of objects being annotated increases. In doing so we provide a further possible measure for assessment of ontologies.

  17. A Semi-Annotated Bibliography: The Wabanakis.

    ERIC Educational Resources Information Center

    Braber, Lee; Dean, Jacquelyn M.

    A companion to the booklet, "A Teacher Manual on Native Americans: The Wabanakis," the semi-annotated bibliography consisting of 235 citations may be used by people who wish to have access to information and research (1890-1982) done about the tribes on the New England and Maritime shores, including the Wabanaki Confederacy composed of…

  18. The Basic Course: A Selected, Annotated Bibliography.

    ERIC Educational Resources Information Center

    Demo, Penny

    Defining basic speech communication courses as those public speaking, interpersonal, or communication courses that treat fundamental communication concepts, this annotated bibliography reflects the current thought of speech educators on the basic course. The bibliography consists of 27 citations, all of which are drawn from the ERIC database. (SKC)

  19. Automating Ontological Annotation with WordNet

    SciTech Connect

    Sanfilippo, Antonio P.; Tratz, Stephen C.; Gregory, Michelle L.; Chappell, Alan R.; Whitney, Paul D.; Posse, Christian; Paulson, Patrick R.; Baddeley, Bob L.; Hohimer, Ryan E.; White, Amanda M.

    2006-01-22

    Semantic Web applications require robust and accurate annotation tools that are capable of automating the assignment of ontological classes to words in naturally occurring text (ontological annotation). Most current ontologies do not include rich lexical databases and are therefore not easily integrated with word sense disambiguation algorithms that are needed to automate ontological annotation. WordNet provides a potentially ideal solution to this problem as it offers a highly structured lexical conceptual representation that has been extensively used to develop word sense disambiguation algorithms. However, WordNet has not been designed as an ontology, and while it can be easily turned into one, the result of doing this would present users with serious practical limitations due to the great number of concepts (synonym sets) it contains. Moreover, mapping WordNet to an existing ontology may be difficult and requires substantial labor. We propose to overcome these limitations by developing an analytical platform that (1) provides a WordNet-based ontology offering a manageable and yet comprehensive set of concept classes, (2) leverages the lexical richness of WordNet to give an extensive characterization of concept class in terms of lexical instances, and (3) integrates a class recognition algorithm that automates the assignment of concept classes to words in naturally occurring text. The ensuing framework makes available an ontological annotation platform that can be effectively integrated with intelligence analysis systems to facilitate evidence marshaling and sustain the creation and validation of inference models.

  20. Research: Annotated Bibliography of New Canadian Studies.

    ERIC Educational Resources Information Center

    Toronto Board of Education (Ontario). Research Dept.

    This annotated bibliography of twenty-one research reports that provide knowledge about various cultures and educational experiences of the major ethnic groups in the Toronto schools is designed to present information for not only special English teachers, but other school personnel as well. The bibliography consists of reports that aim to: 1)…

  1. Project for Global Education: Annotated Bibliography.

    ERIC Educational Resources Information Center

    Institute for World Order, New York, NY.

    Over 260 books, textbooks, articles, pamphlets, periodicals, films, and multi-media packages appropriate for the analysis of global issues at the college level are briefly annotated. Entries include classic books and articles as well as a number of recent (1976-1981) publications. The purpose is to assist students and educators in developing a…

  2. Health Economics Research: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Dillard, Carole D.; And Others

    This annotated bibliography lists books and journal articles published since 1976 which deal with health economics and which are based on health services research supported by the National Center for Health Services Research (NCHSR). Articles prepared by NCHSR staff are listed as intramural. All other articles cite the NCHSR grant or contract…

  3. Nutrition & Adolescent Pregnancy: A Selected Annotated Bibliography.

    ERIC Educational Resources Information Center

    National Agricultural Library (USDA), Washington, DC.

    This annotated bibliography on nutrition and adolescent pregnancy is intended to be a source of technical assistance for nurses, nutritionists, physicians, educators, social workers, and other personnel concerned with improving the health of teenage mothers and their babies. It is divided into two major sections. The first section lists selected…

  4. Auditory Handicaps and Reading: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Geoffrion, Leo D., Comp.; Schuster, Karen E., Comp.

    This annotated bibliography on the reading achievement of the deaf is designed to aid those who wish to learn more about how children with severe auditory handicaps read. The various sections focus on the severity of the reading deficit of deaf students, the findings of basic research on how they read, and some of the instructional approaches…

  5. Case Studies in Reading: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Trela, Thaddeus M., Comp.; Becker, George J., Comp.

    Descriptions of individual diagnosis and remediation of reading problems experienced by students at all levels are included in this annotated bibliography. Included are books, texts having case study sections, and journal reports which together comprise useful sources of case studies of reading disabilities. An opening section lists nine "first…

  6. Early Childhood Education: A Selected, Annotated Bibliography.

    ERIC Educational Resources Information Center

    Yan, Rose, Comp.

    This bibliography on early childhood (toddler to about age six) and early childhood education is divided into three main sections: annotations of monographs and selected papers, notes on journal articles, and abstracts of research reports. These are followed by a brief section on nonconventional (usually mixed media) materials on early childhood…

  7. International, Intercultural Communication: Selected Annotated Bibliography.

    ERIC Educational Resources Information Center

    Casmir, Fred L.

    Designed to assist the student, scholar or practitioner interested in the role of culture in communications and human organization, this annotated bibliography cites sources since 1972 on intercultural and international communication. The 78 references are organized as follows: (1) books (including general handbooks for training sojourners or…

  8. La Mujer Chicana: An Annotated Bibliography, 1976.

    ERIC Educational Resources Information Center

    Chapa, Evey, Ed.; And Others

    Intended to provide interested persons, researchers, and educators with information about "la mujer Chicana", this annotated bibliography cites 320 materials published between 1916 and 1975, with the majority being between 1960 and 1975. The 12 sections cover the following subject areas: Chicana publications; Chicana feminism and…

  9. Studies of Scientific Disciplines. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Weisz, Diane; Kruytbosch, Carlos

    Provided in this bibliography are annotated lists of social studies of science literature, arranged alphabetically by author in 13 disciplinary areas. These areas include astronomy; general biology; biochemistry and molecular biology; biomedicine; chemistry; earth and space sciences; economics; engineering; mathematics; physics; political science;…

  10. Communication and Sexuality: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Buley, Jerry, Comp.; And Others

    The entries in this annotated bibliography represent books, educational journals, dissertations, popular magazines, and research studies that deal with the topic of communication and sexuality. Arranged alphabetically by author and also indexed according to subject matter, the titles span a variety of topics, including the following: sex and…

  11. READABILITY AND READING--AN ANNOTATED BIBLIOGRAPHY.

    ERIC Educational Resources Information Center

    DALE, EDGAR; SEELS, BARBARA

    THIS ANNOTATED BIBLIOGRAPHY COVERS THE FIELD OF READABILITY AND READING. THE SELECTED WORKS ARE ORGANIZED INTO NINE SECTIONS--(1) GENERAL REFERENCES ON READABILITY, (2) MEASURING OF READABILITY, (3) READABILITY AND SENTENCE STRUCTURE, (4) READABILITY AND VOCABULARY, (5) READABILITY AND LITERARY STYLE, (6) READABILITY IN SUBJECT AREA MATERIALS, (7)…

  12. Greeks in Canada (an Annotated Bibliography).

    ERIC Educational Resources Information Center

    Bombas, Leonidas C.

    This bibliography on Greeks in Canada includes annotated references to both published and (mostly) unpublished works. Among the 70 entries (arranged in alphabetical order by author) are articles, reports, papers, and theses that deal either exclusively with or include a separate section on Greeks in the various Canadian provinces. (GC)

  13. Organizational Communication: A Selected, Annotated Bibliography.

    ERIC Educational Resources Information Center

    Putnam, Linda; Frye, Mary

    Directing the reader to books and articles making significant contributions to theory and research in the field of organizational communication, this annotated bibliography contains 43 entries, including seminal works, exemplars, and state-of-the-art pieces primarily by authors within the field of communication. The entries are grouped into 9…

  14. Reflective Annotations: On Becoming a Scholar

    ERIC Educational Resources Information Center

    Alexander, Mark; Taylor, Caroline; Greenberger, Scott; Watts, Margie; Balch, Riann

    2012-01-01

    This article presents the authors' reflective annotations on becoming a scholar. This paper begins with a discussion on socialization for teaching, followed by a discussion on socialization for service and sense of belonging. Then, it describes how the doctoral process evolves. Finally, it talks about adult learners who pursue doctoral education.

  15. Online Annotation--Research and Practices

    ERIC Educational Resources Information Center

    Glover, Ian; Xu, Zhijie; Hardaker, Glenn

    2007-01-01

    Annotation can be a valuable exercise when trying to understand new information. The technique can be used to create a "condensed" version of the original information for later review and to add additional information into the existing document. The growth in web-based learning materials and information sources has created requirement for systems…

  16. Suggested Books for Children: An Annotated Bibliography

    ERIC Educational Resources Information Center

    NHSA Dialog, 2008

    2008-01-01

    This article provides an annotated bibliography of various children's books. It includes listings of books that illustrate the dynamic relationships within the natural environment, economic context, racial and cultural identities, cross-group similarities and differences, gender, different abilities and stories of injustice and resistance.

  17. Annotated Psychodynamic Bibliography for Residents in Psychiatry

    PubMed Central

    CALIGOR, EVE

    1996-01-01

    The author provides an annotated bibliography to introduce psychodynamic psychotherapy and psychoanalysis to residents in psychiatry. The emphasis of the selection is on relevance to practice. The entries are grouped by topic, levels of difficulty are noted, and readings are identified as being of either current or historic relevance. PMID:22700303

  18. Women and World Development: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Buvinic, Mayra; And Others

    This annotated bibliography focuses on the effects of socioeconomic development and cultural change on women and on women's reactions to these changes. It is an expanded version of one which was prepared for the American Association of Science Seminar on Women in Development held in Mexico City in June 1975. The objectives were to disseminate this…

  19. Approaching the Holocaust: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Naftali, Haiya

    1990-01-01

    Presents an annotated bibliography of books on the Holocaust suitable for young adults. Describes Holocaust institutions and their resources. Provides an address for teachers interested in contacting a Holocaust institute in their area. Discusses the proliferation of teaching resources on the Second World War and their value in the classroom. (RW)

  20. Computer systems for annotation of single molecule fragments

    DOEpatents

    Schwartz, David Charles; Severin, Jessica

    2016-07-19

    There are provided computer systems for visualizing and annotating single molecule images. Annotation systems in accordance with this disclosure allow a user to mark and annotate single molecules of interest and their restriction enzyme cut sites thereby determining the restriction fragments of single nucleic acid molecules. The markings and annotations may be automatically generated by the system in certain embodiments and they may be overlaid translucently onto the single molecule images. An image caching system may be implemented in the computer annotation systems to reduce image processing time. The annotation systems include one or more connectors connecting to one or more databases capable of storing single molecule data as well as other biomedical data. Such diverse array of data can be retrieved and used to validate the markings and annotations. The annotation systems may be implemented and deployed over a computer network. They may be ergonomically optimized to facilitate user interactions.

  1. ePIANNO: ePIgenomics ANNOtation tool.

    PubMed

    Liu, Chia-Hsin; Ho, Bing-Ching; Chen, Chun-Ling; Chang, Ya-Hsuan; Hsu, Yi-Chiung; Li, Yu-Cheng; Yuan, Shin-Sheng; Huang, Yi-Huan; Chang, Chi-Sheng; Li, Ker-Chau; Chen, Hsuan-Yu

    2016-01-01

    Recently, with the development of next generation sequencing (NGS), the combination of chromatin immunoprecipitation (ChIP) and NGS, namely ChIP-seq, has become a powerful technique to capture potential genomic binding sites of regulatory factors, histone modifications and chromatin accessible regions. For most researchers, additional information including genomic variations on the TF binding site, allele frequency of variation between different populations, variation associated disease, and other neighbour TF binding sites are essential to generate a proper hypothesis or a meaningful conclusion. Many ChIP-seq datasets had been deposited on the public domain to help researchers make new discoveries. However, researches are often intimidated by the complexity of data structure and largeness of data volume. Such information would be more useful if they could be combined or downloaded with ChIP-seq data. To meet such demands, we built a webtool: ePIgenomic ANNOtation tool (ePIANNO, http://epianno.stat.sinica.edu.tw/index.html). ePIANNO is a web server that combines SNP information of populations (1000 Genomes Project) and gene-disease association information of GWAS (NHGRI) with ChIP-seq (hmChIP, ENCODE, and ROADMAP epigenomics) data. ePIANNO has a user-friendly website interface allowing researchers to explore, navigate, and extract data quickly. We use two examples to demonstrate how users could use functions of ePIANNO webserver to explore useful information about TF related genomic variants. Users could use our query functions to search target regions, transcription factors, or annotations. ePIANNO may help users to generate hypothesis or explore potential biological functions for their studies.

  2. MEETING: Chlamydomonas Annotation Jamboree - October 2003

    SciTech Connect

    Grossman, Arthur R

    2007-04-13

    Shotgun sequencing of the nuclear genome of Chlamydomonas reinhardtii (Chlamydomonas throughout) was performed at an approximate 10X coverage by JGI. Roughly half of the genome is now contained on 26 scaffolds, all of which are at least 1.6 Mb, and the coverage of the genome is ~95%. There are now over 200,000 cDNA sequence reads that we have generated as part of the Chlamydomonas genome project (Grossman, 2003; Shrager et al., 2003; Grossman et al. 2007; Merchant et al., 2007); other sequences have also been generated by the Kasuza sequence group (Asamizu et al., 1999; Asamizu et al., 2000) or individual laboratories that have focused on specific genes. Shrager et al. (2003) placed the reads into distinct contigs (an assemblage of reads with overlapping nucleotide sequences), and contigs that group together as part of the same genes have been designated ACEs (assembly of contigs generated from EST information). All of the reads have also been mapped to the Chlamydomonas nuclear genome and the cDNAs and their corresponding genomic sequences have been reassembled, and the resulting assemblage is called an ACEG (an Assembly of contiguous EST sequences supported by genomic sequence) (Jain et al., 2007). Most of the unique genes or ACEGs are also represented by gene models that have been generated by the Joint Genome Institute (JGI, Walnut Creek, CA). These gene models have been placed onto the DNA scaffolds and are presented as a track on the Chlamydomonas genome browser associated with the genome portal (http://genome.jgi-psf.org/Chlre3/Chlre3.home.html). Ultimately, the meeting grant awarded by DOE has helped enormously in the development of an annotation pipeline (a set of guidelines used in the annotation of genes) and resulted in high quality annotation of over 4,000 genes; the annotators were from both Europe and the USA. Some of the people who led the annotation initiative were Arthur Grossman, Olivier Vallon, and Sabeeha Merchant (with many individual

  3. VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants

    PubMed Central

    Obenchain, Valerie; Lawrence, Michael; Carey, Vincent; Gogarten, Stephanie; Shannon, Paul; Morgan, Martin

    2014-01-01

    Summary: VariantAnnotation is an R / Bioconductor package for the exploration and annotation of genetic variants. Capabilities exist for reading, writing and filtering variant call format (VCF) files. VariantAnnotation allows ready access to additional R / Bioconductor facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. Availability and implementation: This package is implemented in R and available for download at the Bioconductor Web site (http://bioconductor.org/packages/2.13/bioc/html/VariantAnnotation.html). The package contains extensive help pages for individual functions and a ‘vignette’ outlining typical work flows; it is made available under the open source ‘Artistic-2.0’ license. Version 1.9.38 was used in this article. Contact: vobencha@fhcrc.org PMID:24681907

  4. A Bayesian network coding scheme for annotating biomedical information presented to genetic counseling clients.

    PubMed

    Green, Nancy

    2005-04-01

    We developed a Bayesian network coding scheme for annotating biomedical content in layperson-oriented clinical genetics documents. The coding scheme supports the representation of probabilistic and causal relationships among concepts in this domain, at a high enough level of abstraction to capture commonalities among genetic processes and their relationship to health. We are using the coding scheme to annotate a corpus of genetic counseling patient letters as part of the requirements analysis and knowledge acquisition phase of a natural language generation project. This paper describes the coding scheme and presents an evaluation of intercoder reliability for its tag set. In addition to giving examples of use of the coding scheme for analysis of discourse and linguistic features in this genre, we suggest other uses for it in analysis of layperson-oriented text and dialogue in medical communication.

  5. The Reading/Writing Connection Updated: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Ahern, Jennifer; Bishop, Wendy; Briggs, Terri L.; Chapman, Joe; Davis, Kevin; Fay, Jennifer A.; Gillen, N. Kent; Harrill, Rob; Haswell, Richard H.; Loomis, Ormond; Melzer, Daniel; Methvin, Holly; Shupala, Andrew M.; Trevino, Sylvia

    This 1997 annotated bibliography of 244 items updates an earlier 87-item annotated bibliography. The current annotated bibliography focuses on the relationship between reading and writing as it bears upon the teaching of composition. Items looking at writing as a way of teaching reading, and items focused exclusively upon writer-based concerns…

  6. Annotation of Fusarium graminearum (PH-1) Version 5.0

    PubMed Central

    Hammond-Kosack, Kim E.

    2017-01-01

    ABSTRACT Fusarium graminearum floral infections are a major risk to the global supply of safe cereal grains. We report updates to the PH-1 reference genome and significant improvements to the annotation. Changes include introduction of legacy annotation identifiers, new gene models, secretome and effectorP predictions, and inclusion of extensive untranslated region (UTR) annotations. PMID:28082505

  7. VideoANT: Extending Online Video Annotation beyond Content Delivery

    ERIC Educational Resources Information Center

    Hosack, Bradford

    2010-01-01

    This paper expands the boundaries of video annotation in education by outlining the need for extended interaction in online video use, identifying the challenges faced by existing video annotation tools, and introducing Video-ANT, a tool designed to create text-based annotations integrated within the time line of a video hosted online. Several…

  8. RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

    PubMed Central

    Brettin, Thomas; Davis, James J.; Disz, Terry; Edwards, Robert A.; Gerdes, Svetlana; Olsen, Gary J.; Olson, Robert; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D.; Shukla, Maulik; Thomason, James A.; Stevens, Rick; Vonstein, Veronika; Wattam, Alice R.; Xia, Fangfang

    2015-01-01

    The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and annotating their functions. Recently, in order to make RAST a more useful research tool and to keep pace with advancements in bioinformatics, it has become desirable to build a version of RAST that is both customizable and extensible. In this paper, we describe the RAST tool kit (RASTtk), a modular version of RAST that enables researchers to build custom annotation pipelines. RASTtk offers a choice of software for identifying and annotating genomic features as well as the ability to add custom features to an annotation job. RASTtk also accommodates the batch submission of genomes and the ability to customize annotation protocols for batch submissions. This is the first major software restructuring of RAST since its inception. PMID:25666585

  9. RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

    SciTech Connect

    Brettin, Thomas; Davis, James J.; Disz, Terry; Edwards, Robert A.; Gerdes, Svetlana; Olsen, Gary J.; Olson, Robert; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D.; Shukla, Maulik; Thomason, III, James A.; Stevens, Rick; Vonstein, Veronika; Wattam, Alice R.; Xia, Fangfang

    2015-02-10

    The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and annotating their functions. Recently, in order to make RAST a more useful research tool and to keep pace with advancements in bioinformatics, it has become desirable to build a version of RAST that is both customizable and extensible. In this paper, we describe the RAST tool kit (RASTtk), a modular version of RAST that enables researchers to build custom annotation pipelines. RASTtk offers a choice of software for identifying and annotating genomic features as well as the ability to add custom features to an annotation job. RASTtk also accommodates the batch submission of genomes and the ability to customize annotation protocols for batch submissions. This is the first major software restructuring of RAST since its inception.

  10. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

    PubMed

    Brettin, Thomas; Davis, James J; Disz, Terry; Edwards, Robert A; Gerdes, Svetlana; Olsen, Gary J; Olson, Robert; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D; Shukla, Maulik; Thomason, James A; Stevens, Rick; Vonstein, Veronika; Wattam, Alice R; Xia, Fangfang

    2015-02-10

    The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and annotating their functions. Recently, in order to make RAST a more useful research tool and to keep pace with advancements in bioinformatics, it has become desirable to build a version of RAST that is both customizable and extensible. In this paper, we describe the RAST tool kit (RASTtk), a modular version of RAST that enables researchers to build custom annotation pipelines. RASTtk offers a choice of software for identifying and annotating genomic features as well as the ability to add custom features to an annotation job. RASTtk also accommodates the batch submission of genomes and the ability to customize annotation protocols for batch submissions. This is the first major software restructuring of RAST since its inception.

  11. 43 CFR 3131.1 - Receipt and consideration of nominations; public notice and participation.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ...) OIL AND GAS LEASING: NATIONAL PETROLEUM RESERVE, ALASKA Leasing Program § 3131.1 Receipt and... Governor of Alaska, local governments, Native corporations, industry, other Federal agencies, including...

  12. The National Cancer Informatics Program (NCIP) Annotation and Image Markup (AIM) Foundation model.

    PubMed

    Mongkolwat, Pattanasak; Kleper, Vladimir; Talbot, Skip; Rubin, Daniel

    2014-12-01

    Knowledge contained within in vivo imaging annotated by human experts or computer programs is typically stored as unstructured text and separated from other associated information. The National Cancer Informatics Program (NCIP) Annotation and Image Markup (AIM) Foundation information model is an evolution of the National Institute of Health's (NIH) National Cancer Institute's (NCI) Cancer Bioinformatics Grid (caBIG®) AIM model. The model applies to various image types created by various techniques and disciplines. It has evolved in response to the feedback and changing demands from the imaging community at NCI. The foundation model serves as a base for other imaging disciplines that want to extend the type of information the model collects. The model captures physical entities and their characteristics, imaging observation entities and their characteristics, markups (two- and three-dimensional), AIM statements, calculations, image source, inferences, annotation role, task context or workflow, audit trail, AIM creator details, equipment used to create AIM instances, subject demographics, and adjudication observations. An AIM instance can be stored as a Digital Imaging and Communications in Medicine (DICOM) structured reporting (SR) object or Extensible Markup Language (XML) document for further processing and analysis. An AIM instance consists of one or more annotations and associated markups of a single finding along with other ancillary information in the AIM model. An annotation describes information about the meaning of pixel data in an image. A markup is a graphical drawing placed on the image that depicts a region of interest. This paper describes fundamental AIM concepts and how to use and extend AIM for various imaging disciplines.

  13. Annotations and the Collaborative Digital Library: Effects of an Aligned Annotation Interface on Student Argumentation and Reading Strategies

    ERIC Educational Resources Information Center

    Wolfe, Joanna

    2008-01-01

    Recent research on annotation interfaces provides provocative evidence that anchored, annotation-based discussion environments may lead to better conversations about a text. However, annotation interfaces raise complicated tradeoffs regarding screen real estate and positioning. It is argued that solving this screen real estate problem requires…

  14. Biases in the experimental annotations of protein function and their effect on our understanding of protein function space.

    PubMed

    Schnoes, Alexandra M; Ream, David C; Thorman, Alexander W; Babbitt, Patricia C; Friedberg, Iddo

    2013-01-01

    The ongoing functional annotation of proteins relies upon the work of curators to capture experimental findings from scientific literature and apply them to protein sequence and structure data. However, with the increasing use of high-throughput experimental assays, a small number of experimental studies dominate the functional protein annotations collected in databases. Here, we investigate just how prevalent is the "few articles - many proteins" phenomenon. We examine the experimentally validated annotation of proteins provided by several groups in the GO Consortium, and show that the distribution of proteins per published study is exponential, with 0.14% of articles providing the source of annotations for 25% of the proteins in the UniProt-GOA compilation. Since each of the dominant articles describes the use of an assay that can find only one function or a small group of functions, this leads to substantial biases in what we know about the function of many proteins. Mass-spectrometry, microscopy and RNAi experiments dominate high throughput experiments. Consequently, the functional information derived from these experiments is mostly of the subcellular location of proteins, and of the participation of proteins in embryonic developmental pathways. For some organisms, the information provided by different studies overlap by a large amount. We also show that the information provided by high throughput experiments is less specific than those provided by low throughput experiments. Given the experimental techniques available, certain biases in protein function annotation due to high-throughput experiments are unavoidable. Knowing that these biases exist and understanding their characteristics and extent is important for database curators, developers of function annotation programs, and anyone who uses protein function annotation data to plan experiments.

  15. Muon capture in deuterium

    NASA Astrophysics Data System (ADS)

    Ricci, P.; Truhlík, E.; Mosconi, B.; Smejkal, J.

    2010-06-01

    Model dependence of the capture rates of the negative muon capture in deuterium is studied starting from potential models and the weak two-body meson exchange currents constructed in the tree approximation and also from an effective field theory. The tree one-boson exchange currents are derived from the hard pion chiral Lagrangians of the NΔπρωa system. If constructed in conjunction with the one-boson exchange potentials, the capture rates can be calculated consistently. On the other hand, the effective field theory currents, constructed within the heavy baryon chiral perturbation theory, contain a low energy constant d that cannot be extracted from data at the one-particle level nor determined from the first principles. Comparative analysis of the results for the doublet transition rate allows us to extract the constant d.

  16. Contingent Attentional Capture

    NASA Technical Reports Server (NTRS)

    Remington, Roger; Folk, Charles L.

    1994-01-01

    Four experiments address the degree of top-down selectivity in attention capture by feature singletons through manipulations of the spatial relationship and featural similarity of target and distractor singletons in a modified spatial cuing paradigm. Contrary to previous studies, all four experiments show that when searching for a singleton target, an irrelevant featural singleton captures attention only when defined by the same feature value as the target. Experiments 2, 3, and 4 provide a potential explanation for this empirical discrepancy by showing that irrelevant singletons can produce distraction effects that are independent of shifts of spatial attention. The results further support the notion that attentional capture is contingent on top-down attention control settings but indicates that such settings can be instantiated at the level of feature values.

  17. US Spacesuit Knowledge Capture

    NASA Technical Reports Server (NTRS)

    Chullen, Cinda; Thomas, Ken; McMann, Joe; Dolan, Kristi; Bitterly, Rose; Lewis, Cathleen

    2011-01-01

    The ability to learn from both the mistakes and successes of the past is vital to assuring success in the future. Due to the close physical interaction between spacesuit systems and human beings as users, spacesuit technology and usage lends itself rather uniquely to the benefits realized from the skillful organization of historical information; its dissemination; the collection and identification of artifacts; and the education of those in the field. The National Aeronautics and Space Administration (NASA), other organizations and individuals have been performing United States (U.S.) Spacesuit Knowledge Capture since the beginning of space exploration. Avenues used to capture the knowledge have included publication of reports; conference presentations; specialized seminars; and classes usually given by veterans in the field. More recently the effort has been more concentrated and formalized whereby a new avenue of spacesuit knowledge capture has been added to the archives in which videotaping occurs engaging both current and retired specialists in the field presenting technical scope specifically for education and preservation of knowledge. With video archiving, all these avenues of learning can now be brought to life with the real experts presenting their wealth of knowledge on screen for future learners to enjoy. Scope and topics of U.S. spacesuit knowledge capture have included lessons learned in spacesuit technology, experience from the Gemini, Apollo, Skylab and Shuttle programs, hardware certification, design, development and other program components, spacesuit evolution and experience, failure analysis and resolution, and aspects of program management. Concurrently, U.S. spacesuit knowledge capture activities have progressed to a level where NASA, the National Air and Space Museum (NASM), Hamilton Sundstrand (HS) and the spacesuit community are now working together to provide a comprehensive closed-looped spacesuit knowledge capture system which includes

  18. Adiabatic capture and debunching

    SciTech Connect

    Ng, K.Y.; /Fermilab

    2012-03-01

    In the study of beam preparation for the g-2 experiment, adiabatic debunching and adiabatic capture are revisited. The voltage programs for these adiabbatic processes are derived and their properties discussed. Comparison is made with some other form of adiabatic capture program. The muon g-2 experiment at Fermilab calls for intense proton bunches for the creation of muons. A booster batch of 84 bunches is injected into the Recycler Ring, where it is debunched and captured into 4 intense bunches with the 2.5-MHz rf. The experiment requires short bunches with total width less than 100 ns. The transport line from the Recycler to the muon-production target has a low momentum aperture of {approx} {+-}22 MeV. Thus each of the 4 intense proton bunches required to have an emittance less than {approx} 3.46 eVs. The incoming booster bunches have total emittance {approx} 8.4 eVs, or each one with an emittance {approx} 0.1 eVs. However, there is always emittance increase when the 84 booster bunches are debunched. There will be even larger emittance increase during adiabatic capture into the buckets of the 2.5-MHz rf. In addition, the incoming booster bunches may have emittances larger than 0.1 eVs. In this article, we will concentrate on the analysis of the adiabatic capture process with the intention of preserving the beam emittance as much as possible. At this moment, beam preparation experiment is being performed at the Main Injector. Since the Main Injector and the Recycler Ring have roughly the same lattice properties, we are referring to adiabatic capture in the Main Injector instead in our discussions.

  19. Cognition inspired framework for indoor scene annotation

    NASA Astrophysics Data System (ADS)

    Ye, Zhipeng; Liu, Peng; Zhao, Wei; Tang, Xianglong

    2015-09-01

    We present a simple yet effective scene annotation framework based on a combination of bag-of-visual words (BoVW), three-dimensional scene structure estimation, scene context, and cognitive theory. From a macroperspective, the proposed cognition-based hybrid motivation framework divides the annotation problem into empirical inference and real-time classification. Inspired by the inference ability of human beings, common objects of indoor scenes are defined for experience-based inference, while in the real-time classification stage, an improved BoVW-based multilayer abstract semantics labeling method is proposed by introducing abstract semantic hierarchies to narrow the semantic gap and improve the performance of object categorization. The proposed framework was evaluated on a variety of common data sets and experimental results proved its effectiveness.

  20. Analysis and Annotation of Nucleic Acid Sequence

    SciTech Connect

    States, David J.

    2004-07-28

    The aims of this project were to develop improved methods for computational genome annotation and to apply these methods to improve the annotation of genomic sequence data with a specific focus on human genome sequencing. The project resulted in a substantial body of published work. Notable contributions of this project were the identification of basecalling and lane tracking as error processes in genome sequencing and contributions to improved methods for these steps in genome sequencing. This technology improved the accuracy and throughput of genome sequence analysis. Probabilistic methods for physical map construction were developed. Improved methods for sequence alignment, alternative splicing analysis, promoter identification and NF kappa B response gene prediction were also developed.

  1. Cadec: A corpus of adverse drug event annotations.

    PubMed

    Karimi, Sarvnaz; Metke-Jimenez, Alejandro; Kemp, Madonna; Wang, Chen

    2015-06-01

    CSIRO Adverse Drug Event Corpus (Cadec) is a new rich annotated corpus of medical forum posts on patient-reported Adverse Drug Events (ADEs). The corpus is sourced from posts on social media, and contains text that is largely written in colloquial language and often deviates from formal English grammar and punctuation rules. Annotations contain mentions of concepts such as drugs, adverse effects, symptoms, and diseases linked to their corresponding concepts in controlled vocabularies, i.e., SNOMED Clinical Terms and MedDRA. The quality of the annotations is ensured by annotation guidelines, multi-stage annotations, measuring inter-annotator agreement, and final review of the annotations by a clinical terminologist. This corpus is useful for studies in the area of information extraction, or more generally text mining, from social media to detect possible adverse drug reactions from direct patient reports. The corpus is publicly available at https://data.csiro.au.(1).

  2. Deburring: an annotated bibliography. Volume VI

    SciTech Connect

    Gillespie, L.K.

    1980-07-01

    An annotated summary of 138 articles and publications on burrs, burr prevention and deburring is presented. Thirty-seven deburring processes are listed. Entries cited include English, Russian, French, Japanese, and German language articles. Entries are indexed by deburring processes, author, and language. Indexes also indicate which references discuss equipment and tooling, how to use a proces economics, burr properties, and how to design to minimize burr problems. Research studies are identified as are the materials deburred.

  3. Management Tool for Semantic Annotations in WSDL

    NASA Astrophysics Data System (ADS)

    Boissel-Dallier, Nicolas; Lorré, Jean-Pierre; Benaben, Frédérick

    Semantic Web Services add features to automate web services discovery and composition. A new standard called SAWSDL emerged recently as a W3C recommendation to add semantic annotations within web service descriptions (WSDL). In order to manipulate such information in Java program we need an XML parser. Two open-source libraries already exist (SAWSDL4J and Woden4SAWSDL) but they don't meet all our specific needs such as support for WSDL 1.1 and 2.0. This paper presents a new tool, called EasyWSDL, which is able to handle semantic annotations as well as to manage the full WSDL description thanks to a plug-in mechanism. This tool allows us to read/edit/create a WSDL description and related annotations thanks to a uniform API, in both 1.1 and 2.0 versions. This document compares these three libraries and presents its integration into Dragon the OW2 open-source SOA governance tool.

  4. Video data annotation, archiving, and access

    NASA Astrophysics Data System (ADS)

    Wilkin, D.; Connor, J.; Stout, N. J.; Walz, K.; Schlining, K.; Graybeal, J.

    2002-12-01

    Scientifically useful, high-quality video data can be challenging to integrate with other data, and to analyze and archive for use in ocean science. The Monterey Bay Aquarium Research Institute (MBARI) uses high-resolution video equipment to record over 300 remotely operated vehicle dives per year. Over the past 14 years, 13,000 videotapes have been archived and maintained as a centralized institutional resource. MBARI has developed a set of software applications to annotate and access video data. Users can identify the location of video sequences using a data query component; complex queries can be made by constraining temporal, spatial, or physical parameters (e.g., season, location, or depth). The applications reference a knowledge base of over 3,000 biological, geological and technical terms, providing consistent hierarchical information about objects and associated descriptions for annotating video at sea or on shore. The annotation, knowledge base, and query components together provide a comprehensive video archive software system that can be applied to a variety of scientific disciplines. Also in development, using the XML data format, is an interactive reference interface to explore MBARI's deep-sea knowledge base. When complete, the full software system will be disseminated to the research community via the web or CD, to help meet the challenges inherent in archiving video data.

  5. UCSC Data Integrator and Variant Annotation Integrator

    PubMed Central

    Hinrichs, Angie S.; Raney, Brian J.; Speir, Matthew L.; Rhead, Brooke; Casper, Jonathan; Karolchik, Donna; Kuhn, Robert M.; Rosenbloom, Kate R.; Zweig, Ann S.; Haussler, David; Kent, W. James

    2016-01-01

    Summary: Two new tools on the UCSC Genome Browser web site provide improved ways of combining information from multiple datasets, optionally including the user's own custom track data and/or data from track hubs. The Data Integrator combines columns from multiple data tracks, showing all items from the first track along with overlapping items from the other tracks. The Variant Annotation Integrator is tailored to adding functional annotations to variant calls; it offers a more restricted set of underlying data tracks but adds predictions of each variant's consequences for any overlapping or nearby gene transcript. When available, it optionally adds additional annotations including effect prediction scores from dbNSFP for missense mutations, ENCODE regulatory summary tracks and conservation scores. Availability and implementation: The web tools are freely available at http://genome.ucsc.edu/ and the underlying database is available for download at http://hgdownload.cse.ucsc.edu/. The software (written in C and Javascript) is available from https://genome-store.ucsc.edu/ and is freely available for academic and non-profit usage; commercial users must obtain a license. Contact: angie@soe.ucsc.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:26740527

  6. Annotation Graphs: A Graph-Based Visualization for Meta-Analysis of Data Based on User-Authored Annotations.

    PubMed

    Zhao, Jian; Glueck, Michael; Breslav, Simon; Chevalier, Fanny; Khan, Azam

    2017-01-01

    User-authored annotations of data can support analysts in the activity of hypothesis generation and sensemaking, where it is not only critical to document key observations, but also to communicate insights between analysts. We present annotation graphs, a dynamic graph visualization that enables meta-analysis of data based on user-authored annotations. The annotation graph topology encodes annotation semantics, which describe the content of and relations between data selections, comments, and tags. We present a mixed-initiative approach to graph layout that integrates an analyst's manual manipulations with an automatic method based on similarity inferred from the annotation semantics. Various visual graph layout styles reveal different perspectives on the annotation semantics. Annotation graphs are implemented within C8, a system that supports authoring annotations during exploratory analysis of a dataset. We apply principles of Exploratory Sequential Data Analysis (ESDA) in designing C8, and further link these to an existing task typology in the visualization literature. We develop and evaluate the system through an iterative user-centered design process with three experts, situated in the domain of analyzing HCI experiment data. The results suggest that annotation graphs are effective as a method of visually extending user-authored annotations to data meta-analysis for discovery and organization of ideas.

  7. Neutron capture therapies

    SciTech Connect

    Yanch, Jacquelyn C.; Shefer, Ruth E.; Klinkowstein, Robert E.

    1999-01-01

    In one embodiment there is provided an application of the .sup.10 B(n,.alpha.).sup.7 Li nuclear reaction or other neutron capture reactions for the treatment of rheumatoid arthritis. This application, called Boron Neutron Capture Synovectomy (BNCS), requires substantially altered demands on neutron beam design than for instance treatment of deep seated tumors. Considerations for neutron beam design for the treatment of arthritic joints via BNCS are provided for, and comparisons with the design requirements for Boron Neutron Capture Therapy (BNCT) of tumors are made. In addition, exemplary moderator/reflector assemblies are provided which produce intense, high-quality neutron beams based on (p,n) accelerator-based reactions. In another embodiment there is provided the use of deuteron-based charged particle reactions to be used as sources for epithermal or thermal neutron beams for neutron capture therapies. Many d,n reactions (e.g. using deuterium, tritium or beryllium targets) are very prolific at relatively low deuteron energies.

  8. Neutron capture therapies

    SciTech Connect

    Yanch, J.C.; Shefer, R.E.; Klinkowstein, R.E.

    1999-11-02

    In one embodiment there is provided an application of the {sup 10}B(n,{alpha}){sup 7}Li nuclear reaction or other neutron capture reactions for the treatment of rheumatoid arthritis. This application, called Boron Neutron Capture Synovectomy (BNCS), requires substantially altered demands on neutron beam design than for instance treatment of deep seated tumors. Considerations for neutron beam design for the treatment of arthritic joints via BNCS are provided for, and comparisons with the design requirements for Boron Neutron Capture Therapy (BNCT) of tumors are made. In addition, exemplary moderator/reflector assemblies are provided which produce intense, high-quality neutron beams based on (p,n) accelerator-based reactions. In another embodiment there is provided the use of deuteron-based charged particle reactions to be used as sources for epithermal or thermal neutron beams for neutron capture therapies. Many d,n reactions (e.g. using deuterium, tritium or beryllium targets) are very prolific at relatively low deuteron energies.

  9. Attention Capture by Faces

    ERIC Educational Resources Information Center

    Langton, Stephen R. H.; Law, Anna S.; Burton, A. Mike; Schweinberger, Stefan R.

    2008-01-01

    We report three experiments that investigate whether faces are capable of capturing attention when in competition with other non-face objects. In Experiment 1a participants took longer to decide that an array of objects contained a butterfly target when a face appeared as one of the distracting items than when the face did not appear in the array.…

  10. Carbon Smackdown: Carbon Capture

    SciTech Connect

    Jeffrey Long

    2010-07-12

    In this July 9, 2010 Berkeley Lab summer lecture, Lab scientists Jeff Long of the Materials Sciences and Nancy Brown of the Environmental Energy Technologies Division discuss their efforts to fight climate change by capturing carbon from the flue gas of power plants, as well as directly from the air

  11. Capturing the Market

    ERIC Educational Resources Information Center

    Ramaswami, Rama

    2009-01-01

    Digital lecture capture and broadcast solutions have been around for only about 10 years, but are poised for healthy growth. Frost & Sullivan research analysts estimate that the market (which amounts to $25 million currently) will quadruple by 2013. It's still dominated by a few key players, however: Sonic Foundry holds a hefty 40 percent-plus…

  12. Carbon Smackdown: Carbon Capture

    ScienceCinema

    Jeffrey Long

    2016-07-12

    In this July 9, 2010 Berkeley Lab summer lecture, Lab scientists Jeff Long of the Materials Sciences and Nancy Brown of the Environmental Energy Technologies Division discuss their efforts to fight climate change by capturing carbon from the flue gas of power plants, as well as directly from the air

  13. 28 CFR 8.4 - Custody of seized property, inventory and receipt.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 28 Judicial Administration 1 2010-07-01 2010-07-01 false Custody of seized property, inventory and receipt. 8.4 Section 8.4 Judicial Administration DEPARTMENT OF JUSTICE FBI FORFEITURE AUTHORITY FOR CERTAIN STATUTES § 8.4 Custody of seized property, inventory and receipt. All property seized pursuant...

  14. 42 CFR 482.92 - Condition of participation: Organ recovery and receipt.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 42 Public Health 5 2011-10-01 2011-10-01 false Condition of participation: Organ recovery and... participation: Organ recovery and receipt. Transplant centers must have written protocols for validation of donor-recipient blood type and other vital data for the deceased organ recovery, organ receipt,...

  15. 31 CFR 245.8 - Receipt or recovery of original check.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 31 Money and Finance: Treasury 2 2010-07-01 2010-07-01 false Receipt or recovery of original check. 245.8 Section 245.8 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued... CHECKS § 245.8 Receipt or recovery of original check. (a) If the original check is received or...

  16. 21 CFR 1271.265 - Receipt, predistribution shipment, and distribution of an HCT/P.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... distribution of an HCT/P. 1271.265 Section 1271.265 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF... Practice § 1271.265 Receipt, predistribution shipment, and distribution of an HCT/P. (a) Receipt. You must evaluate each incoming HCT/P for the presence and significance of microorganisms and inspect for damage...

  17. 21 CFR 1271.265 - Receipt, predistribution shipment, and distribution of an HCT/P.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... distribution of an HCT/P. 1271.265 Section 1271.265 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF... Practice § 1271.265 Receipt, predistribution shipment, and distribution of an HCT/P. (a) Receipt. You must evaluate each incoming HCT/P for the presence and significance of microorganisms and inspect for damage...

  18. 21 CFR 1271.265 - Receipt, predistribution shipment, and distribution of an HCT/P.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... distribution of an HCT/P. 1271.265 Section 1271.265 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF... Practice § 1271.265 Receipt, predistribution shipment, and distribution of an HCT/P. (a) Receipt. You must evaluate each incoming HCT/P for the presence and significance of microorganisms and inspect for damage...

  19. 21 CFR 1271.265 - Receipt, predistribution shipment, and distribution of an HCT/P.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... distribution of an HCT/P. 1271.265 Section 1271.265 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF... Practice § 1271.265 Receipt, predistribution shipment, and distribution of an HCT/P. (a) Receipt. You must evaluate each incoming HCT/P for the presence and significance of microorganisms and inspect for damage...

  20. 21 CFR 1271.265 - Receipt, predistribution shipment, and distribution of an HCT/P.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... distribution of an HCT/P. 1271.265 Section 1271.265 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF... Practice § 1271.265 Receipt, predistribution shipment, and distribution of an HCT/P. (a) Receipt. You must evaluate each incoming HCT/P for the presence and significance of microorganisms and inspect for damage...

  1. 48 CFR 1415.201 - Exchanges with industry before receipt of proposals.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... OF THE INTERIOR CONTRACTING METHODS AND CONTRACT TYPES CONTRACTING BY NEGOTIATION Solicitation and Receipt of Proposals and Information 1415.201 Exchanges with industry before receipt of proposals. (a) Use... solicitation for information or planning purposes without a written justification and without obtaining...

  2. 75 FR 32766 - Notice of Receipt of Requests to Voluntarily Cancel Certain Pesticide Registrations

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-09

    ... AGENCY Notice of Receipt of Requests to Voluntarily Cancel Certain Pesticide Registrations AGENCY... receipt of a request by the registrant, Ticks or Mosquitoes, LLC., to voluntarily cancel the pesticide... . Follow the on-line instructions for submitting comments. Mail: Office of Pesticide Programs...

  3. 39 CFR 762.41 - Advice of non-receipt or loss, destruction, or mutilation.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 39 Postal Service 1 2011-07-01 2011-07-01 false Advice of non-receipt or loss, destruction, or...; DISBURSEMENT POSTAL MONEY ORDERS DISBURSEMENT POSTAL MONEY ORDERS Issuance of Substitutes for Lost, Destroyed, Mutilated, and Defaced Disbursement Postal Money Orders § 762.41 Advice of non-receipt or loss,...

  4. 39 CFR 762.41 - Advice of non-receipt or loss, destruction, or mutilation.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 39 Postal Service 1 2012-07-01 2012-07-01 false Advice of non-receipt or loss, destruction, or...; DISBURSEMENT POSTAL MONEY ORDERS DISBURSEMENT POSTAL MONEY ORDERS Issuance of Substitutes for Lost, Destroyed, Mutilated, and Defaced Disbursement Postal Money Orders § 762.41 Advice of non-receipt or loss,...

  5. 19 CFR 4.23 - Certificate of payment and cash receipt.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 19 Customs Duties 1 2010-04-01 2010-04-01 false Certificate of payment and cash receipt. 4.23... Certificate of payment and cash receipt. Upon each payment of tonnage tax or light money, the master of the vessel shall be given a certificate on Customs Form 1002 on which the control number of the cash...

  6. 48 CFR 53.301-1165 - Standard Form 1165, Receipt for Cash-Subvoucher.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 48 Federal Acquisition Regulations System 2 2010-10-01 2010-10-01 false Standard Form 1165, Receipt for Cash-Subvoucher. 53.301-1165 Section 53.301-1165 Federal Acquisition Regulations System... Standard Form 1165, Receipt for Cash-Subvoucher. EC01MY91.079...

  7. 48 CFR 52.229-10 - State of New Mexico Gross Receipts and Compensating Tax.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 48 Federal Acquisition Regulations System 2 2010-10-01 2010-10-01 false State of New Mexico Gross... Provisions and Clauses 52.229-10 State of New Mexico Gross Receipts and Compensating Tax. As prescribed in 29.401-4(b), insert the following clause: State of New Mexico Gross Receipts and Compensating Tax...

  8. 12 CFR 7.1015 - Receipt of stock from a small business investment company.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 12 Banks and Banking 1 2011-01-01 2011-01-01 false Receipt of stock from a small business... TREASURY BANK ACTIVITIES AND OPERATIONS Bank Powers § 7.1015 Receipt of stock from a small business investment company. A national bank may purchase the stock of a small business investment company (SBIC)...

  9. 6 CFR 29.6 - Acknowledgment of receipt, validation, and marking.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 6 Domestic Security 1 2010-01-01 2010-01-01 false Acknowledgment of receipt, validation, and marking. 29.6 Section 29.6 Domestic Security DEPARTMENT OF HOMELAND SECURITY, OFFICE OF THE SECRETARY PROTECTED CRITICAL INFRASTRUCTURE INFORMATION § 29.6 Acknowledgment of receipt, validation, and marking....

  10. 45 CFR 1801.16 - Closing date for receipt of nominations.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 45 Public Welfare 4 2010-10-01 2010-10-01 false Closing date for receipt of nominations. 1801.16 Section 1801.16 Public Welfare Regulations Relating to Public Welfare (Continued) HARRY S. TRUMAN SCHOLARSHIP FOUNDATION HARRY S. TRUMAN SCHOLARSHIP PROGRAM Nominations § 1801.16 Closing date for receipt...

  11. 45 CFR 1801.16 - Closing date for receipt of nominations.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 45 Public Welfare 4 2011-10-01 2011-10-01 false Closing date for receipt of nominations. 1801.16 Section 1801.16 Public Welfare Regulations Relating to Public Welfare (Continued) HARRY S. TRUMAN SCHOLARSHIP FOUNDATION HARRY S. TRUMAN SCHOLARSHIP PROGRAM Nominations § 1801.16 Closing date for receipt...

  12. 45 CFR 1801.16 - Closing date for receipt of nominations.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 45 Public Welfare 4 2013-10-01 2013-10-01 false Closing date for receipt of nominations. 1801.16 Section 1801.16 Public Welfare Regulations Relating to Public Welfare (Continued) HARRY S. TRUMAN SCHOLARSHIP FOUNDATION HARRY S. TRUMAN SCHOLARSHIP PROGRAM Nominations § 1801.16 Closing date for receipt...

  13. 45 CFR 1801.16 - Closing date for receipt of nominations.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 45 Public Welfare 4 2012-10-01 2012-10-01 false Closing date for receipt of nominations. 1801.16 Section 1801.16 Public Welfare Regulations Relating to Public Welfare (Continued) HARRY S. TRUMAN SCHOLARSHIP FOUNDATION HARRY S. TRUMAN SCHOLARSHIP PROGRAM Nominations § 1801.16 Closing date for receipt...

  14. 45 CFR 1801.16 - Closing date for receipt of nominations.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 45 Public Welfare 4 2014-10-01 2014-10-01 false Closing date for receipt of nominations. 1801.16 Section 1801.16 Public Welfare Regulations Relating to Public Welfare (Continued) HARRY S. TRUMAN SCHOLARSHIP FOUNDATION HARRY S. TRUMAN SCHOLARSHIP PROGRAM Nominations § 1801.16 Closing date for receipt...

  15. 76 FR 38170 - Toxic Substances Control Act Chemical Testing; Receipt of Test Data

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-29

    ... AGENCY Toxic Substances Control Act Chemical Testing; Receipt of Test Data AGENCY: Environmental Protection Agency (EPA). ACTION: Notice. SUMMARY: This notice announces EPA's receipt of test data on 12 chemicals listed in the Toxic Substance Control Act (TSCA) section 4 test rule titled ``Testing of...

  16. 76 FR 38169 - Toxic Substances Control Act Chemical Testing; Receipt of Test Data

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-29

    ... AGENCY Toxic Substances Control Act Chemical Testing; Receipt of Test Data AGENCY: Environmental Protection Agency (EPA). ACTION: Notice. SUMMARY: This notice announces EPA's receipt of test data on five chemicals listed in the Toxic Substances Control Act (TSCA) section 4 test rule titled ``In Vitro...

  17. 77 FR 71678 - The Goodyear Tire & Rubber Company, Receipt of Petition for Decision of Inconsequential...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-03

    ... National Highway Traffic Safety Administration The Goodyear Tire & Rubber Company, Receipt of Petition for.... ACTION: Receipt of petition. SUMMARY: The Goodyear Tire & Rubber Company (GOODYEAR),\\1\\ has determined... to 49 CFR part 573, Defect and Noncompliance Responsibility and Reports. \\1\\ Goodyear Tire &...

  18. Factors Impacting Receipt of a Functional Curriculum: A Secondary Analysis of the NLTS2

    ERIC Educational Resources Information Center

    Bouck, Emily C.

    2013-01-01

    Curriculum can matter, but little research systematically examines the receipt of a particular curriculum for secondary students with disabilities and what influences the receipt of such a curriculum. This secondary analysis of the NLTS2 sought to understand who receives a functional curriculum as their secondary special education curriculum and…

  19. 10 CFR 835.405 - Receipt of packages containing radioactive material.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 10 Energy 4 2010-01-01 2010-01-01 false Receipt of packages containing radioactive material. 835... Individuals and Areas § 835.405 Receipt of packages containing radioactive material. (a) If packages containing quantities of radioactive material in excess of a Type A quantity (as defined at 10 CFR 71.4)...

  20. 7 CFR 735.401 - Electronic warehouse receipt and USWA electronic document providers.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 7 2011-01-01 2011-01-01 false Electronic warehouse receipt and USWA electronic... UNITED STATES WAREHOUSE ACT Electronic Providers § 735.401 Electronic warehouse receipt and USWA electronic document providers. (a) To establish a USWA-authorized system to issue and transfer EWR's and...