Science.gov

Sample records for annotation assessment project

  1. nGASP - the nematode genome annotation assessment project

    SciTech Connect

    Coghlan, A; Fiedler, T J; McKay, S J; Flicek, P; Harris, T W; Blasiar, D; Allen, J; Stein, L D

    2008-12-19

    While the C. elegans genome is extensively annotated, relatively little information is available for other Caenorhabditis species. The nematode genome annotation assessment project (nGASP) was launched to objectively assess the accuracy of protein-coding gene prediction software in C. elegans, and to apply this knowledge to the annotation of the genomes of four additional Caenorhabditis species and other nematodes. Seventeen groups worldwide participated in nGASP, and submitted 47 prediction sets for 10 Mb of the C. elegans genome. Predictions were compared to reference gene sets consisting of confirmed or manually curated gene models from WormBase. The most accurate gene-finders were 'combiner' algorithms, which made use of transcript- and protein-alignments and multi-genome alignments, as well as gene predictions from other gene-finders. Gene-finders that used alignments of ESTs, mRNAs and proteins came in second place. There was a tie for third place between gene-finders that used multi-genome alignments and ab initio gene-finders. The median gene level sensitivity of combiners was 78% and their specificity was 42%, which is nearly the same accuracy as reported for combiners in the human genome. C. elegans genes with exons of unusual hexamer content, as well as those with many exons, short exons, long introns, a weak translation start signal, weak splice sites, or poorly conserved orthologs were the most challenging for gene-finders. While the C. elegans genome is extensively annotated, relatively little information is available for other Caenorhabditis species. The nematode genome annotation assessment project (nGASP) was launched to objectively assess the accuracy of protein-coding gene prediction software in C. elegans, and to apply this knowledge to the annotation of the genomes of four additional Caenorhabditis species and other nematodes. Seventeen groups worldwide participated in nGASP, and submitted 47 prediction sets for 10 Mb of the C. elegans genome

  2. Projects, Training, and Strategies for Generating Income: A Selected Annotated Bibliography. Annotated Bibliography #4.

    ERIC Educational Resources Information Center

    Michigan State Univ., East Lansing. Non-Formal Education Information Center.

    A selected annotated bibliography on projects, training, and strategies for generating income, intended for persons actively engaged in non-formal education for development, reflects a growing number of projects on income generation by and for women's groups, and a reliance upon indigenous associations and group action. Documents dating from 1969…

  3. Annotated Bibliography for the DEWPOINT project

    SciTech Connect

    Oehmen, Christopher S.

    2009-04-21

    This bibliography covers aspects of the Detection and Early Warning of Proliferation from Online INdicators of Threat (DEWPOINT) project including 1) data management and querying, 2) baseline and advanced methods for classifying free text, and 3) algorithms to achieve the ultimate goal of inferring intent from free text sources. Metrics for assessing the quality and correctness of classification are addressed in the second group. Data management and querying include methods for efficiently storing, indexing, searching, and organizing the data we expect to operate on within the DEWPOINT project.

  4. Project for Global Education: Annotated Bibliography.

    ERIC Educational Resources Information Center

    Institute for World Order, New York, NY.

    Over 260 books, textbooks, articles, pamphlets, periodicals, films, and multi-media packages appropriate for the analysis of global issues at the college level are briefly annotated. Entries include classic books and articles as well as a number of recent (1976-1981) publications. The purpose is to assist students and educators in developing a…

  5. Annotated Bibliography for the MATADOR Project

    SciTech Connect

    Janik, Tadeusz; White, Amanda M.; Pawley, Norma H.; Myers, Kary L.; Oehmen, Christopher S.

    2012-06-07

    The MATADOR project is focused on developing methods to infer the operational mode of facilities that have the potential to be used in weapons development programs. Our central hypothesis is that by persistent, non-intrusive monitoring of such facilities, differences between various use scenarios can be reliably discovered. The impact of success in this area is that new tools and techniques for monitoring and treaty verification would make it easier to reliably discover and document weapons development activities. This document captures the literature that will serve as a basis to approach this task. The relevant literature is divided into topical areas that relate to the various aspects of expected MATADOR project development. We have found that very little work that is directly applicable for our purposes has been published, which has motivated the development of novel methods under the project. Therefore, the manuscripts referenced in this document were selected based on their potential use as foundational blocks for the methods we anticipate developing, or so that we can understand the limitations of existing methods.

  6. Trade-off analysis for environmental projects: An annotated bibliography

    SciTech Connect

    Feather, T.D.; Harrington, K.W.; Capan, D.T.

    1995-08-01

    This is a report with an attached annotated bibliography. This study explores the literature for analytical techniques that can support the complex decision-making process associated with Corps of Engineers environmental projects. The literature review focuses on opportunities for using trade-off methodologies and group processes in environmental plan formulation and evaluation. The work was conducted under the Evaluation Framework Work Unit within the Evaluation of Environmental Investments Research Program.

  7. A Novel Method for Learner Assessment Based on Learner Annotations

    ERIC Educational Resources Information Center

    Noorbehbahani, Fakhroddin; Samani, Elaheh Biglar Beigi; Jazi, Hossein Hadian

    2013-01-01

    Assessment is one of the most essential parts of any instructive learning process which aims to evaluate a learner's knowledge about learning concepts. In this work, a new method for learner assessment based on learner annotations is presented. The proposed method exploits the M-BLEU algorithm to find the most similar reference annotations…

  8. Assessment of protein set coherence using functional annotations

    PubMed Central

    Chagoyen, Monica; Carazo, Jose M; Pascual-Montano, Alberto

    2008-01-01

    Background Analysis of large-scale experimental datasets frequently produces one or more sets of proteins that are subsequently mined for functional interpretation and validation. To this end, a number of computational methods have been devised that rely on the analysis of functional annotations. Although current methods provide valuable information (e.g. significantly enriched annotations, pairwise functional similarities), they do not specifically measure the degree of homogeneity of a protein set. Results In this work we present a method that scores the degree of functional homogeneity, or coherence, of a set of proteins on the basis of the global similarity of their functional annotations. The method uses statistical hypothesis testing to assess the significance of the set in the context of the functional space of a reference set. As such, it can be used as a first step in the validation of sets expected to be homogeneous prior to further functional interpretation. Conclusion We evaluate our method by analysing known biologically relevant sets as well as random ones. The known relevant sets comprise macromolecular complexes, cellular components and pathways described for Saccharomyces cerevisiae, which are mostly significantly coherent. Finally, we illustrate the usefulness of our approach for validating 'functional modules' obtained from computational analysis of protein-protein interaction networks. Matlab code and supplementary data are available at PMID:18937846

  9. GENCODE: the reference human genome annotation for The ENCODE Project.

    PubMed

    Harrow, Jennifer; Frankish, Adam; Gonzalez, Jose M; Tapanari, Electra; Diekhans, Mark; Kokocinski, Felix; Aken, Bronwen L; Barrell, Daniel; Zadissa, Amonida; Searle, Stephen; Barnes, If; Bignell, Alexandra; Boychenko, Veronika; Hunt, Toby; Kay, Mike; Mukherjee, Gaurab; Rajan, Jeena; Despacio-Reyes, Gloria; Saunders, Gary; Steward, Charles; Harte, Rachel; Lin, Michael; Howald, Cédric; Tanzer, Andrea; Derrien, Thomas; Chrast, Jacqueline; Walters, Nathalie; Balasubramanian, Suganthi; Pei, Baikang; Tress, Michael; Rodriguez, Jose Manuel; Ezkurdia, Iakes; van Baren, Jeltje; Brent, Michael; Haussler, David; Kellis, Manolis; Valencia, Alfonso; Reymond, Alexandre; Gerstein, Mark; Guigó, Roderic; Hubbard, Tim J

    2012-09-01

    The GENCODE Consortium aims to identify all gene features in the human genome using a combination of computational analysis, manual annotation, and experimental validation. Since the first public release of this annotation data set, few new protein-coding loci have been added, yet the number of alternative splicing transcripts annotated has steadily increased. The GENCODE 7 release contains 20,687 protein-coding and 9640 long noncoding RNA loci and has 33,977 coding transcripts not represented in UCSC genes and RefSeq. It also has the most comprehensive annotation of long noncoding RNA (lncRNA) loci publicly available with the predominant transcript form consisting of two exons. We have examined the completeness of the transcript annotation and found that 35% of transcriptional start sites are supported by CAGE clusters and 62% of protein-coding genes have annotated polyA sites. Over one-third of GENCODE protein-coding genes are supported by peptide hits derived from mass spectrometry spectra submitted to Peptide Atlas. New models derived from the Illumina Body Map 2.0 RNA-seq data identify 3689 new loci not currently in GENCODE, of which 3127 consist of two exon models indicating that they are possibly unannotated long noncoding loci. GENCODE 7 is publicly available from gencodegenes.org and via the Ensembl and UCSC Genome Browsers.

  10. Mouse genome annotation by the RefSeq project.

    PubMed

    McGarvey, Kelly M; Goldfarb, Tamara; Cox, Eric; Farrell, Catherine M; Gupta, Tripti; Joardar, Vinita S; Kodali, Vamsi K; Murphy, Michael R; O'Leary, Nuala A; Pujar, Shashikant; Rajput, Bhanu; Rangwala, Sanjida H; Riddick, Lillian D; Webb, David; Wright, Mathew W; Murphy, Terence D; Pruitt, Kim D

    2015-10-01

    Complete and accurate annotation of the mouse genome is critical to the advancement of research conducted on this important model organism. The National Center for Biotechnology Information (NCBI) develops and maintains many useful resources to assist the mouse research community. In particular, the reference sequence (RefSeq) database provides high-quality annotation of multiple mouse genome assemblies using a combinatorial approach that leverages computation, manual curation, and collaboration. Implementation of this conservative and rigorous approach, which focuses on representation of only full-length and non-redundant data, produces high-quality annotation products. RefSeq records explicitly link sequences to current knowledge in a timely manner, updating public records regularly and rapidly in response to nomenclature updates, addition of new relevant publications, collaborator discussion, and user feedback. Whole genome re-annotation is also conducted at least every 12-18 months, and often more frequently in response to assembly updates or availability of informative data. This article highlights key features and advantages of RefSeq genome annotation products and presents an overview of NCBI processes to generate these data. Further discussion of NCBI's resources highlights useful features and the best methods for accessing our data.

  11. Gene Characterization Index: Assessing the Depth of Gene Annotation

    PubMed Central

    Yusuf, Dimas; Brumm, Jochen; Cheung, Warren; Wahlestedt, Claes; Lenhard, Boris; Wasserman, Wyeth W.

    2008-01-01

    Background We introduce the Gene Characterization Index, a bioinformatics method for scoring the extent to which a protein-encoding gene is functionally described. Inherently a reflection of human perception, the Gene Characterization Index is applied for assessing the characterization status of individual genes, thus serving the advancement of both genome annotation and applied genomics research by rapid and unbiased identification of groups of uncharacterized genes for diverse applications such as directed functional studies and delineation of novel drug targets. Methodology/Principal Findings The scoring procedure is based on a global survey of researchers, who assigned characterization scores from 1 (poor) to 10 (extensive) for a sample of genes based on major online resources. By evaluating the survey as training data, we developed a bioinformatics procedure to assign gene characterization scores to all genes in the human genome. We analyzed snapshots of functional genome annotation over a period of 6 years to assess temporal changes reflected by the increase of the average Gene Characterization Index. Applying the Gene Characterization Index to genes within pharmaceutically relevant classes, we confirmed known drug targets as high-scoring genes and revealed potentially interesting novel targets with low characterization indexes. Removing known drug targets and genes linked to sequence-related patent filings from the entirety of indexed genes, we identified sets of low-scoring genes particularly suited for further experimental investigation. Conclusions/Significance The Gene Characterization Index is intended to serve as a tool to the scientific community and granting agencies for focusing resources and efforts on unexplored areas of the genome. The Gene Characterization Index is available from http://cisreg.ca/gci/. PMID:18213364

  12. Office of Maternal and Child Health Active Projects FY 1989. An Annotated Listing.

    ERIC Educational Resources Information Center

    National Center for Education in Maternal and Child Health, Washington, DC.

    An annotated listing is presented of projects offering maternal and child health care services. These projects, referred to as special projects of regional and national significance (SPRANS), are supported by the Office of Maternal and Child Health of the Department of Health and Human Services. The first section provides information on services…

  13. ProteomeCommons.org collaborative annotation and project management resource integrated with the Tranche repository.

    PubMed

    Hill, James A; Smith, Bryan E; Papoulias, Panagiotis G; Andrews, Philip C

    2010-06-01

    ProteomeCommons.org has implemented a resource that incorporates concepts of Web 2.0 social networking for collaborative annotation of data sets placed in the Tranche repository. The annotation tools are part of a project management resource that is effective for individual laboratories or large distributed groups. The creation of the resource was motivated by the need for a way to encourage annotation of data sets with high accuracy and compliance rates. The system is designed to respond to the dynamic nature of research in an easy-to-use fashion through the use of a dynamic data model that does not inhibit the innovation that is important for basic research. Placing the annotation tool within a project manager allows annotation to occur over the life of the project and provides the security and monitoring capabilities needed for large or small collaborative projects. The resource effectively supports distributed groups of investigators working on common data sets and is available immediately at https://ProteomeCommons.org . In addition, a silver compliant data resource based on ProteomeCommons.org has been developed for cancer Biomedical Informatics Grid (caBIG) to allow much broader access to the annotations describing data sets in the Tranche repository.

  14. Maternal and Child Health Bureau Active Projects FY 1991: An Annotated Listing.

    ERIC Educational Resources Information Center

    National Center for Education in Maternal and Child Health, Washington, DC.

    This annotated listing provides brief descriptions of the 591 projects funded during 1991 by federal set-aside funds of the Maternal and Child Health (MCH) Services Block Grant and identified as special projects of regional and national significance (SPRANS). Preliminary information includes an introduction, an organization chart of the Maternal…

  15. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

    PubMed Central

    2011-01-01

    Background Second-generation sequencing technologies are precipitating major shifts with regards to what kinds of genomes are being sequenced and how they are annotated. While the first generation of genome projects focused on well-studied model organisms, many of today's projects involve exotic organisms whose genomes are largely terra incognita. This complicates their annotation, because unlike first-generation projects, there are no pre-existing 'gold-standard' gene-models with which to train gene-finders. Improvements in genome assembly and the wide availability of mRNA-seq data are also creating opportunities to update and re-annotate previously published genome annotations. Today's genome projects are thus in need of new genome annotation tools that can meet the challenges and opportunities presented by second-generation sequencing technologies. Results We present MAKER2, a genome annotation and data management tool designed for second-generation genome projects. MAKER2 is a multi-threaded, parallelized application that can process second-generation datasets of virtually any size. We show that MAKER2 can produce accurate annotations for novel genomes where training-data are limited, of low quality or even non-existent. MAKER2 also provides an easy means to use mRNA-seq data to improve annotation quality; and it can use these data to update legacy annotations, significantly improving their quality. We also show that MAKER2 can evaluate the quality of genome annotations, and identify and prioritize problematic annotations for manual review. Conclusions MAKER2 is the first annotation engine specifically designed for second-generation genome projects. MAKER2 scales to datasets of any size, requires little in the way of training data, and can use mRNA-seq data to improve annotation quality. It can also update and manage legacy genome annotation datasets. PMID:22192575

  16. An Assessment of Reliability of Dialogue-Annotation Instructions.

    ERIC Educational Resources Information Center

    Mann, William C.; And Others

    This report is part of ongoing research engaged in transforming knowledge of how human communication works into improvements in man-machine communication of existing and planned computer systems. The methodology includes having a trained "Observer" annotate transcripts of human communication in a prescribed manner. One of the issues, therefore, in…

  17. The Ensembl gene annotation system.

    PubMed

    Aken, Bronwen L; Ayling, Sarah; Barrell, Daniel; Clarke, Laura; Curwen, Valery; Fairley, Susan; Fernandez Banet, Julio; Billis, Konstantinos; García Girón, Carlos; Hourlier, Thibaut; Howe, Kevin; Kähäri, Andreas; Kokocinski, Felix; Martin, Fergal J; Murphy, Daniel N; Nag, Rishi; Ruffier, Magali; Schuster, Michael; Tang, Y Amy; Vogel, Jan-Hinnerk; White, Simon; Zadissa, Amonida; Flicek, Paul; Searle, Stephen M J

    2016-01-01

    The Ensembl gene annotation system has been used to annotate over 70 different vertebrate species across a wide range of genome projects. Furthermore, it generates the automatic alignment-based annotation for the human and mouse GENCODE gene sets. The system is based on the alignment of biological sequences, including cDNAs, proteins and RNA-seq reads, to the target genome in order to construct candidate transcript models. Careful assessment and filtering of these candidate transcripts ultimately leads to the final gene set, which is made available on the Ensembl website. Here, we describe the annotation process in detail.Database URL: http://www.ensembl.org/index.html. PMID:27337980

  18. The Ensembl gene annotation system

    PubMed Central

    Aken, Bronwen L.; Ayling, Sarah; Barrell, Daniel; Clarke, Laura; Curwen, Valery; Fairley, Susan; Fernandez Banet, Julio; Billis, Konstantinos; García Girón, Carlos; Hourlier, Thibaut; Howe, Kevin; Kähäri, Andreas; Kokocinski, Felix; Martin, Fergal J.; Murphy, Daniel N.; Nag, Rishi; Ruffier, Magali; Schuster, Michael; Tang, Y. Amy; Vogel, Jan-Hinnerk; White, Simon; Zadissa, Amonida; Flicek, Paul

    2016-01-01

    The Ensembl gene annotation system has been used to annotate over 70 different vertebrate species across a wide range of genome projects. Furthermore, it generates the automatic alignment-based annotation for the human and mouse GENCODE gene sets. The system is based on the alignment of biological sequences, including cDNAs, proteins and RNA-seq reads, to the target genome in order to construct candidate transcript models. Careful assessment and filtering of these candidate transcripts ultimately leads to the final gene set, which is made available on the Ensembl website. Here, we describe the annotation process in detail. Database URL: http://www.ensembl.org/index.html PMID:27337980

  19. Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.

    PubMed

    Sakai, Hiroaki; Lee, Sung Shin; Tanaka, Tsuyoshi; Numa, Hisataka; Kim, Jungsok; Kawahara, Yoshihiro; Wakimoto, Hironobu; Yang, Ching-chia; Iwamoto, Masao; Abe, Takashi; Yamada, Yuko; Muto, Akira; Inokuchi, Hachiro; Ikemura, Toshimichi; Matsumoto, Takashi; Sasaki, Takuji; Itoh, Takeshi

    2013-02-01

    The Rice Annotation Project Database (RAP-DB, http://rapdb.dna.affrc.go.jp/) has been providing a comprehensive set of gene annotations for the genome sequence of rice, Oryza sativa (japonica group) cv. Nipponbare. Since the first release in 2005, RAP-DB has been updated several times along with the genome assembly updates. Here, we present our newest RAP-DB based on the latest genome assembly, Os-Nipponbare-Reference-IRGSP-1.0 (IRGSP-1.0), which was released in 2011. We detected 37,869 loci by mapping transcript and protein sequences of 150 monocot species. To provide plant researchers with highly reliable and up to date rice gene annotations, we have been incorporating literature-based manually curated data, and 1,626 loci currently incorporate literature-based annotation data, including commonly used gene names or gene symbols. Transcriptional activities are shown at the nucleotide level by mapping RNA-Seq reads derived from 27 samples. We also mapped the Illumina reads of a Japanese leading japonica cultivar, Koshihikari, and a Chinese indica cultivar, Guangluai-4, to the genome and show alignments together with the single nucleotide polymorphisms (SNPs) and gene functional annotations through a newly developed browser, Short-Read Assembly Browser (S-RAB). We have developed two satellite databases, Plant Gene Family Database (PGFD) and Integrative Database of Cereal Gene Phylogeny (IDCGP), which display gene family and homologous gene relationships among diverse plant species. RAP-DB and the satellite databases offer simple and user-friendly web interfaces, enabling plant and genome researchers to access the data easily and facilitating a broad range of plant research topics.

  20. Coordinated international action to accelerate genome-to-phenome with FAANG, The Functional Annotation of Animal Genomes project

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We describe the organization of a nascent international effort - the "Functional Annotation of ANimal Genomes" project - whose aim is to produce comprehensive maps of functional elements in the genomes of domesticated animal species....

  1. Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum

    PubMed Central

    2010-01-01

    Background Plasmodium falciparum is the main causative agent of malaria. Of the 5 484 predicted genes of P. falciparum, about 57% do not have sufficient sequence similarity to characterized genes in other species to warrant functional assignments. Non-homology methods are thus needed to obtain functional clues for these uncharacterized genes. Gene expression data have been widely used in the recent years to help functional annotation in an intra-species way via the so-called Guilt By Association (GBA) principle. Results We propose a new method that uses gene expression data to assess inter-species annotation transfers. Our approach starts from a set of likely orthologs between a reference species (here S. cerevisiae and D. melanogaster) and a query species (P. falciparum). It aims at identifying clusters of coexpressed genes in the query species whose coexpression has been conserved in the reference species. These conserved clusters of coexpressed genes are then used to assess annotation transfers between genes with low sequence similarity, enabling reliable transfers of annotations from the reference to the query species. The approach was used with transcriptomic data sets of P. falciparum, S. cerevisiae and D. melanogaster, and enabled us to propose with high confidence new/refined annotations for several dozens hypothetical/putative P. falciparum genes. Notably, we revised the annotation of genes involved in ribosomal proteins and ribosome biogenesis and assembly, thus highlighting several potential drug targets. Conclusions Our approach uses both sequence similarity and gene expression data to help inter-species gene annotation transfers. Experiments show that this strategy improves the accuracy achieved when using solely sequence similarity and outperforms the accuracy of the GBA approach. In addition, our experiments with P. falciparum show that it can infer a function for numerous hypothetical genes. PMID:20078859

  2. Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.

    PubMed

    Wang, Jia; Chen, Dijun; Lei, Yang; Chang, Ji-Wei; Hao, Bao-Hai; Xing, Feng; Li, Sen; Xu, Qiang; Deng, Xiu-Xin; Chen, Ling-Ling

    2014-01-01

    Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia), and constructed the Citrus sinensis annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.

  3. A Selected and Annotated Bibliography Related to Cooperative and Project Methods in Distributive Education. Bibliographic Series No. 5.

    ERIC Educational Resources Information Center

    Ferguson, Edward T., Ed.

    The compilation of this annotated bibliography of selected materials was undertaken to provide a thorough review of the literature concerning the cooperative and project methods of instruction in the field of distributive education to be used in "A Pilot Program Comparing Cooperative and Project Methods of Teaching Distributive Education" (ED 016…

  4. Foreign Language Assessment in Grades K-8: An Annotated Bibliography of Assessment Instruments. Language in Education: Theory and Practice 90.

    ERIC Educational Resources Information Center

    Thompson, Lynn, Comp.

    The annotated bibliography describes foreign language assessment instruments currently used in elementary and middle schools. The instruments are drawn from a wide variety of program models: Foreign Language in the Elementary School (FLES), middle school sequential instruction, and immersion (total, two-way, partial). The bibliography has six…

  5. Report on the 2011 Critical Assessment of Function Annotation (CAFA) meeting

    SciTech Connect

    Friedberg, Iddo

    2015-01-21

    The Critical Assessment of Function Annotation meeting was held July 14-15, 2011 at the Austria Conference Center in Vienna, Austria. There were 73 registered delegates at the meeting. We thank the DOE for this award. It helped us organize and support a scientific meeting AFP 2011 as a special interest group (SIG) meeting associated with the ISMB 2011 conference. The conference was held in Vienna, Austria, in July 2011. The AFP SIG was held on July 15-16, 2011 (immediately preceding the conference). The meeting consisted of two components, the first being a series of talks (invited and contributed) and discussion sections dedicated to protein function research, with an emphasis on the theory and practice of computational methods utilized in functional annotation. The second component provided a large-scale assessment of computational methods through participation in the Critical Assessment of Functional Annotation (CAFA). The meeting was exciting and, based on feedback, quite successful. There were 73 registered participants. The schedule was only slightly different from the one proposed, due to two cancellations. Dr. Olga Troyanskaya has canceled and we invited Dr. David Jones instead. Similarly, instead of Dr. Richard Roberts, Dr. Simon Kasif gave a closing keynote. The remaining invited speakers were Janet Thornton (EBI) and Amos Bairoch (University of Geneva).

  6. Quality assessment of digital annotated ECG data from clinical trials by the FDA ECG Warehouse.

    PubMed

    Sarapa, Nenad

    2007-09-01

    The FDA mandates that digital electrocardiograms (ECGs) from 'thorough' QTc trials be submitted into the ECG Warehouse in Health Level 7 extended markup language format with annotated onset and offset points of waveforms. The FDA did not disclose the exact Warehouse metrics and minimal acceptable quality standards. The author describes the Warehouse scoring algorithms and metrics used by FDA, points out ways to improve FDA review and suggests Warehouse benefits for pharmaceutical sponsors. The Warehouse ranks individual ECGs according to their score for each quality metric and produces histogram distributions with Warehouse-specific thresholds that identify ECGs of questionable quality. Automatic Warehouse algorithms assess the quality of QT annotation and duration of manual QT measurement by the central ECG laboratory.

  7. Annotated bibliography of methodology for assessment of undiscovered oil and gas resources

    USGS Publications Warehouse

    Charpentier, R.R.; Dolton, G.L.; Ulmishek, G.F.

    1995-01-01

    An annotated bibliography of methodology of assessment of undiscovered oil and gas resources is presented as a useful reference for those engaged in resource assessment. The articles that are included deal only with quantitative assessment of undiscovered or inferred resources. the articles in this bibliography are classified largely according to the major assessment method that was applied in each situation. Major assessment methods include areal and volumetric yield methods, field size distributions, historical extrapolation, deposit modeling, organic geochemical mass balance methods, and direct expert assessment. Other categories include mathematical tools, reserve growth/confirmation, quantitative characterization of undiscovered resources, and general topics. For the purpose of future updates, we solicit contributions of articles that may have been missed in the preparation of this bibliography. ?? 1995 Oxford University Press.

  8. An Introduction to Genome Annotation.

    PubMed

    Campbell, Michael S; Yandell, Mark

    2015-12-17

    Genome projects have evolved from large international undertakings to tractable endeavors for a single lab. Accurate genome annotation is critical for successful genomic, genetic, and molecular biology experiments. These annotations can be generated using a number of approaches and available software tools. This unit describes methods for genome annotation and a number of software tools commonly used in gene annotation.

  9. Health Education and Physical Education (Healthy, Active Living). Grades 5 and 9. Assessment Annotations for the Curriculum Frameworks.

    ERIC Educational Resources Information Center

    Missouri State Dept. of Elementary and Secondary Education, Jefferson City.

    This document provides supplemental assessment information to "Missouri's Framework for Curriculum Development in Health Education and Physical Education (Healthy, Active Living) K-12." The assessment annotations found in the third column of this document are intended to provide information for administrators, curriculum directors, and teachers…

  10. Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.

    PubMed

    Shameer, Khader; Tripathi, Lokesh P; Kalari, Krishna R; Dudley, Joel T; Sowdhamini, Ramanathan

    2016-09-01

    Accurate assessment of genetic variation in human DNA sequencing studies remains a nontrivial challenge in clinical genomics and genome informatics. Ascribing functional roles and/or clinical significances to single nucleotide variants identified from a next-generation sequencing study is an important step in genome interpretation. Experimental characterization of all the observed functional variants is yet impractical; thus, the prediction of functional and/or regulatory impacts of the various mutations using in silico approaches is an important step toward the identification of functionally significant or clinically actionable variants. The relationships between genotypes and the expressed phenotypes are multilayered and biologically complex; such relationships present numerous challenges and at the same time offer various opportunities for the design of in silico variant assessment strategies. Over the past decade, many bioinformatics algorithms have been developed to predict functional consequences of single nucleotide variants in the protein coding regions. In this review, we provide an overview of the bioinformatics resources for the prediction, annotation and visualization of coding single nucleotide variants. We discuss the currently available approaches and major challenges from the perspective of protein sequence, structure, function and interactions that require consideration when interpreting the impact of putatively functional variants. We also discuss the relevance of incorporating integrated workflows for predicting the biomedical impact of the functionally important variations encoded in a genome, exome or transcriptome. Finally, we propose a framework to classify variant assessment approaches and strategies for incorporation of variant assessment within electronic health records.

  11. Video Annotation Software Application for Thorough Collaborative Assessment of and Feedback on Microteaching Lessons in Geography Education

    ERIC Educational Resources Information Center

    van der Westhuizen, Christo P.; Golightly, Aubrey

    2015-01-01

    This article discusses the process and findings of a study in which video annotation (VideoANT) and a learning management system (LMS) were implemented together in the microteaching lessons of fourth-year geography student teachers. The aim was to ensure adequate assessment of and feedback for each student, since these aspects are, in general, a…

  12. ASSESSMENT OF THE SWINE PROTEIN-ANNOTATED OLIGONUCLEOTIDE MICROARRAY AND UTILITY OF THE ARRAYS FOR EQTL AND TRANSCRIPTIONAL PROFILING STUDIES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We have evaluated the new Swine Protein-Annotated Oligonucleotide Microarray (http://www.pigoligoarray.org) by analyzing transcriptional profiles for longissimus dorsi muscle (LD), Bronchial lymph node (BLN) and Lung. Four LD samples were used to assess the stringency of hybridization conditions com...

  13. Annotated Selected Bibliography & Index for Teaching African-American Learners: Culturally Responsive Pedagogy Project.

    ERIC Educational Resources Information Center

    Hilliard, Asa G.

    This annotated bibliography and index presents nearly 2,000 references that are substantially unique to African or African American teaching and learning. Designed to support teacher education, the bibliography features references that were chosen if they were culturally relevant, recognized the African or African American experience, and drew…

  14. Assessment of community-submitted ontology annotations from a novel database-journal partnership.

    PubMed

    Berardini, Tanya Z; Li, Donghui; Muller, Robert; Chetty, Raymond; Ploetz, Larry; Singh, Shanker; Wensel, April; Huala, Eva

    2012-01-01

    As the scientific literature grows, leading to an increasing volume of published experimental data, so does the need to access and analyze this data using computational tools. The most commonly used method to convert published experimental data on gene function into controlled vocabulary annotations relies on a professional curator, employed by a model organism database or a more general resource such as UniProt, to read published articles and compose annotation statements based on the articles' contents. A more cost-effective and scalable approach capable of capturing gene function data across the whole range of biological research organisms in computable form is urgently needed. We have analyzed a set of ontology annotations generated through collaborations between the Arabidopsis Information Resource and several plant science journals. Analysis of the submissions entered using the online submission tool shows that most community annotations were well supported and the ontology terms chosen were at an appropriate level of specificity. Of the 503 individual annotations that were submitted, 97% were approved and community submissions captured 72% of all possible annotations. This new method for capturing experimental results in a computable form provides a cost-effective way to greatly increase the available body of annotations without sacrificing annotation quality. Database URL: www.arabidopsis.org.

  15. Assessing the Drosophila melanogaster and Anopheles gambiae Genome Annotations Using Genome-Wide Sequence Comparisons

    PubMed Central

    Jaillon, Olivier; Dossat, Carole; Eckenberg, Ralph; Eiglmeier, Karin; Segurens, Béatrice; Aury, Jean-Marc; Roth, Charles W.; Scarpelli, Claude; Brey, Paul T.; Weissenbach, Jean; Wincker, Patrick

    2003-01-01

    We performed genome-wide sequence comparisons at the protein coding level between the genome sequences of Drosophila melanogaster and Anopheles gambiae. Such comparisons detect evolutionarily conserved regions (ecores) that can be used for a qualitative and quantitative evaluation of the available annotations of both genomes. They also provide novel candidate features for annotation. The percentage of ecores mapping outside annotations in the A. gambiae genome is about fourfold higher than in D. melanogaster. The A. gambiae genome assembly also contains a high proportion of duplicated ecores, possibly resulting from artefactual sequence duplications in the genome assembly. The occurrence of 4063 ecores in the D. melanogaster genome outside annotations suggests that some genes are not yet or only partially annotated. The present work illustrates the power of comparative genomics approaches towards an exhaustive and accurate establishment of gene models and gene catalogues in insect genomes. PMID:12840038

  16. Assessment of features for automatic CTG analysis based on expert annotation.

    PubMed

    Chudácek, Vacláv; Spilka, Jirí; Lhotská, Lenka; Janku, Petr; Koucký, Michal; Huptych, Michal; Bursa, Miroslav

    2011-01-01

    Cardiotocography (CTG) is the monitoring of fetal heart rate (FHR) and uterine contractions (TOCO) since 1960's used routinely by obstetricians to detect fetal hypoxia. The evaluation of the FHR in clinical settings is based on an evaluation of macroscopic morphological features and so far has managed to avoid adopting any achievements from the HRV research field. In this work, most of the ever-used features utilized for FHR characterization, including FIGO, HRV, nonlinear, wavelet, and time and frequency domain features, are investigated and the features are assessed based on their statistical significance in the task of distinguishing the FHR into three FIGO classes. Annotation derived from the panel of experts instead of the commonly utilized pH values was used for evaluation of the features on a large data set (552 records). We conclude the paper by presenting the best uncorrelated features and their individual rank of importance according to the meta-analysis of three different ranking methods. Number of acceleration and deceleration, interval index, as well as Lempel-Ziv complexity and Higuchi's fractal dimension are among the top five features. PMID:22255719

  17. Sequence- and Structure-Based Functional Annotation and Assessment of Metabolic Transporters in Aspergillus oryzae: A Representative Case Study

    PubMed Central

    Raethong, Nachon; Wong-ekkabut, Jirasak; Laoteng, Kobkul; Vongsangnak, Wanwipa

    2016-01-01

    Aspergillus oryzae is widely used for the industrial production of enzymes. In A. oryzae metabolism, transporters appear to play crucial roles in controlling the flux of molecules for energy generation, nutrients delivery, and waste elimination in the cell. While the A. oryzae genome sequence is available, transporter annotation remains limited and thus the connectivity of metabolic networks is incomplete. In this study, we developed a metabolic annotation strategy to understand the relationship between the sequence, structure, and function for annotation of A. oryzae metabolic transporters. Sequence-based analysis with manual curation showed that 58 genes of 12,096 total genes in the A. oryzae genome encoded metabolic transporters. Under consensus integrative databases, 55 unambiguous metabolic transporter genes were distributed into channels and pores (7 genes), electrochemical potential-driven transporters (33 genes), and primary active transporters (15 genes). To reveal the transporter functional role, a combination of homology modeling and molecular dynamics simulation was implemented to assess the relationship between sequence to structure and structure to function. As in the energy metabolism of A. oryzae, the H+-ATPase encoded by the AO090005000842 gene was selected as a representative case study of multilevel linkage annotation. Our developed strategy can be used for enhancing metabolic network reconstruction. PMID:27274991

  18. Re-Annotator: Annotation Pipeline for Microarray Probe Sequences.

    PubMed

    Arloth, Janine; Bader, Daniel M; Röh, Simone; Altmann, Andre

    2015-01-01

    Microarray technologies are established approaches for high throughput gene expression, methylation and genotyping analysis. An accurate mapping of the array probes is essential to generate reliable biological findings. However, manufacturers of the microarray platforms typically provide incomplete and outdated annotation tables, which often rely on older genome and transcriptome versions that differ substantially from up-to-date sequence databases. Here, we present the Re-Annotator, a re-annotation pipeline for microarray probe sequences. It is primarily designed for gene expression microarrays but can also be adapted to other types of microarrays. The Re-Annotator uses a custom-built mRNA reference database to identify the positions of gene expression array probe sequences. We applied Re-Annotator to the Illumina Human-HT12 v4 microarray platform and found that about one quarter (25%) of the probes differed from the manufacturer's annotation. In further computational experiments on experimental gene expression data, we compared Re-Annotator to another probe re-annotation tool, ReMOAT, and found that Re-Annotator provided an improved re-annotation of microarray probes. A thorough re-annotation of probe information is crucial to any microarray analysis. The Re-Annotator pipeline is freely available at http://sourceforge.net/projects/reannotator along with re-annotated files for Illumina microarrays HumanHT-12 v3/v4 and MouseRef-8 v2.

  19. An Annotated Bibliography of Selected Projects, Theses, and Dissertations on the American Indian by Arizona State University Students from 1943-1974.

    ERIC Educational Resources Information Center

    Mech, Joyce, Comp.

    Fifty-five published projects, theses, and dissertations dealing with the Native American and written by Arizona State University students are listed in this annotated bibliography. Arranged alphabetically according to authors and topics, the publications cover the period from 1943 to 1974. Topics include: (1) attitudes/achievement, (2)…

  20. WESTERN AIRBORNE CONTAMINANTS ASSESSMENT PROJECT RESEARCH PLAN

    EPA Science Inventory

    The goal of the Western Airborne Contaminants Assessment Project (WACAP) is to assess the deposition of airborne contaminants in Western National Parks, providing regional and local information on exposure, accumulation, impacts, and probable sources. This project is being desig...

  1. Annotated Bibliography of Computer Software for Teaching Early Reading and Spelling. Project RIMES 2000.

    ERIC Educational Resources Information Center

    Rhein, Deborah; Alibrandi, Mary; Lyons, Mary; Sammons, Janice; Doyle, Luther

    This bibliography, developed by Project RIMES (Reading Instructional Methods of Efficacy with Students) lists 80 software packages for teaching early reading and spelling to students at risk for reading and spelling failure. The software packages are presented alphabetically by title. Entries usually include a grade level indicator, a brief…

  2. Annotated directory of US Government information system projects of potential interest to NASA/SSPO

    NASA Technical Reports Server (NTRS)

    Legrand, Sue

    1988-01-01

    The purpose of this research activity was to develop a list for NASA of major U.S. government information systems contacts who are able to cooperate with NASA on technical interchange. The list contains the names of appropriate managers involved in major information system projects, U.S. government office officials, and their hierarchy up to the highest officials whose major responsibilities include government information systems development.

  3. Strategies for annotation and curation of translational databases: the eTUMOUR project

    PubMed Central

    Julià-Sapé, Margarida; Lurgi, Miguel; Mier, Mariola; Estanyol, Francesc; Rafael, Xavier; Candiota, Ana Paula; Barceló, Anna; García, Alina; Martínez-Bisbal, M. Carmen; Ferrer-Luna, Rubén; Moreno-Torres, Àngel; Celda, Bernardo; Arús, Carles

    2012-01-01

    The eTUMOUR (eT) multi-centre project gathered in vivo and ex vivo magnetic resonance (MR) data, as well as transcriptomic and clinical information from brain tumour patients, with the purpose of improving the diagnostic and prognostic evaluation of future patients. In order to carry this out, among other work, a database—the eTDB—was developed. In addition to complex permission rules and software and management quality control (QC), it was necessary to develop anonymization, processing and data visualization tools for the data uploaded. It was also necessary to develop sophisticated curation strategies that involved on one hand, dedicated fields for QC-generated meta-data and specialized queries and global permissions for senior curators and on the other, to establish a set of metrics to quantify its contents. The indispensable dataset (ID), completeness and pairedness indices were set. The database contains 1317 cases created as a result of the eT project and 304 from a previous project, INTERPRET. The number of cases fulfilling the ID was 656. Completeness and pairedness were heterogeneous, depending on the data type involved. PMID:23180768

  4. Morphosyntactic Annotation of CHILDES Transcripts

    ERIC Educational Resources Information Center

    Sagae, Kenji; Davis, Eric; Lavie, Alon; MacWhinney, Brian; Wintner, Shuly

    2010-01-01

    Corpora of child language are essential for research in child language acquisition and psycholinguistics. Linguistic annotation of the corpora provides researchers with better means for exploring the development of grammatical constructions and their usage. We describe a project whose goal is to annotate the English section of the CHILDES database…

  5. Human Genome Annotation

    NASA Astrophysics Data System (ADS)

    Gerstein, Mark

    A central problem for 21st century science is annotating the human genome and making this annotation useful for the interpretation of personal genomes. My talk will focus on annotating the 99% of the genome that does not code for canonical genes, concentrating on intergenic features such as structural variants (SVs), pseudogenes (protein fossils), binding sites, and novel transcribed RNAs (ncRNAs). In particular, I will describe how we identify regulatory sites and variable blocks (SVs) based on processing next-generation sequencing experiments. I will further explain how we cluster together groups of sites to create larger annotations. Next, I will discuss a comprehensive pseudogene identification pipeline, which has enabled us to identify >10K pseudogenes in the genome and analyze their distribution with respect to age, protein family, and chromosomal location. Throughout, I will try to introduce some of the computational algorithms and approaches that are required for genome annotation. Much of this work has been carried out in the framework of the ENCODE, modENCODE, and 1000 genomes projects.

  6. Teachers Using Annotations to Engage Students in Assessment Conversations: Recontextualising Knowledge

    ERIC Educational Resources Information Center

    Willis, Jill; Adie, Lenore

    2014-01-01

    Assessment for Learning practices with students such as feedback, and self- and peer assessment are opportunities for teachers and students to develop a shared understanding of how to create quality learning performances. Quality is often represented through achievement standards. This paper explores how primary school teachers in Australia used…

  7. Algal functional annotation tool

    SciTech Connect

    2012-07-12

    Abstract BACKGROUND: Progress in genome sequencing is proceeding at an exponential pace, and several new algal genomes are becoming available every year. One of the challenges facing the community is the association of protein sequences encoded in the genomes with biological function. While most genome assembly projects generate annotations for predicted protein sequences, they are usually limited and integrate functional terms from a limited number of databases. Another challenge is the use of annotations to interpret large lists of 'interesting' genes generated by genome-scale datasets. Previously, these gene lists had to be analyzed across several independent biological databases, often on a gene-by-gene basis. In contrast, several annotation databases, such as DAVID, integrate data from multiple functional databases and reveal underlying biological themes of large gene lists. While several such databases have been constructed for animals, none is currently available for the study of algae. Due to renewed interest in algae as potential sources of biofuels and the emergence of multiple algal genome sequences, a significant need has arisen for such a database to process the growing compendiums of algal genomic data. DESCRIPTION: The Algal Functional Annotation Tool is a web-based comprehensive analysis suite integrating annotation data from several pathway, ontology, and protein family databases. The current version provides annotation for the model alga Chlamydomonas reinhardtii, and in the future will include additional genomes. The site allows users to interpret large gene lists by identifying associated functional terms, and their enrichment. Additionally, expression data for several experimental conditions were compiled and analyzed to provide an expression-based enrichment search. A tool to search for functionally-related genes based on gene expression across these conditions is also provided. Other features include dynamic visualization of genes on KEGG

  8. Algal functional annotation tool

    2012-07-12

    Abstract BACKGROUND: Progress in genome sequencing is proceeding at an exponential pace, and several new algal genomes are becoming available every year. One of the challenges facing the community is the association of protein sequences encoded in the genomes with biological function. While most genome assembly projects generate annotations for predicted protein sequences, they are usually limited and integrate functional terms from a limited number of databases. Another challenge is the use of annotations tomore » interpret large lists of 'interesting' genes generated by genome-scale datasets. Previously, these gene lists had to be analyzed across several independent biological databases, often on a gene-by-gene basis. In contrast, several annotation databases, such as DAVID, integrate data from multiple functional databases and reveal underlying biological themes of large gene lists. While several such databases have been constructed for animals, none is currently available for the study of algae. Due to renewed interest in algae as potential sources of biofuels and the emergence of multiple algal genome sequences, a significant need has arisen for such a database to process the growing compendiums of algal genomic data. DESCRIPTION: The Algal Functional Annotation Tool is a web-based comprehensive analysis suite integrating annotation data from several pathway, ontology, and protein family databases. The current version provides annotation for the model alga Chlamydomonas reinhardtii, and in the future will include additional genomes. The site allows users to interpret large gene lists by identifying associated functional terms, and their enrichment. Additionally, expression data for several experimental conditions were compiled and analyzed to provide an expression-based enrichment search. A tool to search for functionally-related genes based on gene expression across these conditions is also provided. Other features include dynamic visualization of genes on

  9. Environmental assessment: The Eden project

    NASA Astrophysics Data System (ADS)

    Roza, Christodoulaki

    Non domestic buildings account for about one-sixth of the U.K.'s entire C02 emissions and one-third of the building related ones 2 . Their proportion of energy consumption, particularly electricity, has also been growing 2 . New buildings are not necessarily better, with energy use often proving to be much higher than their designers anticipated 2 . Annual C02 emissions of two- and sometimes three- times design expectations are far from unusual, leaving a massive credibility gap 2 . These and other global environmental and human health related concerns have motivated an increasing number of designers, developers and building users to pursue more environmentally sustainable designs and construction strategies 5 . However, these buildings can be difficult to evaluate, since they are large in scale, complex in materials and function and temporally dynamic due to limited service life of building components and changing user requirements 5 . All of these factors make environmental assessment of the buildings challenging. Previous Post Occupancy Review of Buildings and their Engineering (PROBE) building investigations have uncovered serious shortcomings in facilities management, or at least mismatches between a building's management needs and the ability of the occupiers to provide the right level of management 1 . Consequently, large differences between energy performance expectations and outcomes can occur virtually unnoticed, while designers continue to repeat flawed descriptions 2 . This investigation attempts to evaluate the building's operation and to help achieving demonstrable improvements in terms of energy efficiency and occupant satisfaction. The scope of this study is to evaluate the actual environmental performance of a building notable for its advanced design. The Education Resource Centre at the Eden Project was selected to compare design expectations with post occupancy performance. This report contains a small-scale survey of user satisfaction with the

  10. Environmental Assessment Lakeview Geothermal Project

    SciTech Connect

    Treis, Tania

    2012-04-30

    The Town of Lakeview is proposing to construct and operate a geothermal direct use district heating system in Lakeview, Oregon. The proposed project would be in Lake County, Oregon, within the Lakeview Known Geothermal Resources Area (KGRA). The proposed project includes the following elements: Drilling, testing, and completion of a new production well and geothermal water injection well; construction and operation of a geothermal production fluid pipeline from the well pad to various Town buildings (i.e., local schools, hospital, and Lake County Industrial Park) and back to a geothermal water injection well. This EA describes the proposed project, the alternatives considered, and presents the environmental analysis pursuant to the National Environmental Policy Act. The project would not result in adverse effects to the environment with the implementation of environmental protection measures.

  11. Hawaii Geothermal Project annotated bibliography: Biological resources of the geothermal subzones, the transmission corridors and the Puna District, Island of Hawaii

    SciTech Connect

    Miller, S.E.; Burgett, J.M.

    1993-10-01

    Task 1 of the Hawaii Geothermal Project Interagency Agreement between the Fish and Wildlife Service and the Department of Energy-Oak Ridge National Laboratory (DOE) includes an annotated bibliography of published and unpublished documents that cover biological issues related to the lowland rain forest in Puna, adjacent areas, transmission corridors, and in the proposed Hawaii Geothermal Project (HGP). The 51 documents reviewed in this report cover the main body of biological information for these projects. The full table of contents and bibliography for each document is included along with two copies (as requested in the Interagency Agreement) of the biological sections of each document. The documents are reviewed in five main categories: (1) geothermal subzones (29 documents); (2) transmission cable routes (8 documents); (3) commercial satellite launching facility (Spaceport; 1 document); (4) manganese nodule processing facility (2 documents); (5) water resource development (1 document); and (6) ecosystem stability and introduced species (11 documents).

  12. Ares Project Technology Assessment: Approach and Tools

    NASA Technical Reports Server (NTRS)

    Hueter, Uwe; Tyson, Richard

    2010-01-01

    Technology assessments provide a status of the development maturity of specific technologies. Along with benefit analysis, the risks the project assumes can be quantified. Normally due to budget constraints, the competing technologies are prioritized and decisions are made which ones to fund. A detailed technology development plan is produced for the selected technologies to provide a roadmap to reach the desired maturity by the project s critical design review. Technology assessments can be conducted for both technology only tasks or for product development programs. This paper is primarily biased toward the product development programs. The paper discusses the Ares Project s approach to technology assessment. System benefit analysis, risk assessment, technology prioritization, and technology readiness assessment are addressed. A description of the technology readiness level tool being used is provided.

  13. Mexico Wind Resource Assessment Project

    SciTech Connect

    Schwartz, M.N.; Elliott, D.L.

    1995-05-01

    A preliminary wind energy resource assessment of Mexico that produced wind resource maps for both utility-scale and rural applications was undertaken as part of the Mexico-U.S. Renewable Energy Cooperation Program. This activity has provided valuable information needed to facilitate the commercialization of small wind turbines and windfarms in Mexico and to lay the groundwork for subsequent wind resource activities. A surface meteorological data set of hourly data in digital form was utilized to prepare a more detailed and accurate wind resource assessment of Mexico than otherwise would have been possible. Software was developed to perform the first ever detailed analysis of the wind characteristics data for over 150 stations in Mexico. The hourly data set was augmented with information from weather balloons (upper-air data), ship wind data from coastal areas, and summarized wind data from sources in Mexico. The various data were carefully evaluated for their usefulness in preparing the wind resource assessment. The preliminary assessment has identified many areas of good-to-excellent wind resource potential and shows that the wind resource in Mexico is considerably greater than shown in previous surveys.

  14. Ranking biomedical annotations with annotator's semantic relevancy.

    PubMed

    Wu, Aihua

    2014-01-01

    Biomedical annotation is a common and affective artifact for researchers to discuss, show opinion, and share discoveries. It becomes increasing popular in many online research communities, and implies much useful information. Ranking biomedical annotations is a critical problem for data user to efficiently get information. As the annotator's knowledge about the annotated entity normally determines quality of the annotations, we evaluate the knowledge, that is, semantic relationship between them, in two ways. The first is extracting relational information from credible websites by mining association rules between an annotator and a biomedical entity. The second way is frequent pattern mining from historical annotations, which reveals common features of biomedical entities that an annotator can annotate with high quality. We propose a weighted and concept-extended RDF model to represent an annotator, a biomedical entity, and their background attributes and merge information from the two ways as the context of an annotator. Based on that, we present a method to rank the annotations by evaluating their correctness according to user's vote and the semantic relevancy between the annotator and the annotated entity. The experimental results show that the approach is applicable and efficient even when data set is large. PMID:24899918

  15. Ranking Biomedical Annotations with Annotator's Semantic Relevancy

    PubMed Central

    2014-01-01

    Biomedical annotation is a common and affective artifact for researchers to discuss, show opinion, and share discoveries. It becomes increasing popular in many online research communities, and implies much useful information. Ranking biomedical annotations is a critical problem for data user to efficiently get information. As the annotator's knowledge about the annotated entity normally determines quality of the annotations, we evaluate the knowledge, that is, semantic relationship between them, in two ways. The first is extracting relational information from credible websites by mining association rules between an annotator and a biomedical entity. The second way is frequent pattern mining from historical annotations, which reveals common features of biomedical entities that an annotator can annotate with high quality. We propose a weighted and concept-extended RDF model to represent an annotator, a biomedical entity, and their background attributes and merge information from the two ways as the context of an annotator. Based on that, we present a method to rank the annotations by evaluating their correctness according to user's vote and the semantic relevancy between the annotator and the annotated entity. The experimental results show that the approach is applicable and efficient even when data set is large. PMID:24899918

  16. Comparative Omics-Driven Genome Annotation Refinement: Application across Yersiniae

    SciTech Connect

    Rutledge, Alexandra C.; Jones, Marcus B.; Chauhan, Sadhana; Purvine, Samuel O.; Sanford, James; Monroe, Matthew E.; Brewer, Heather M.; Payne, Samuel H.; Ansong, Charles; Frank, Bryan C.; Smith, Richard D.; Peterson, Scott; Motin, Vladimir L.; Adkins, Joshua N.

    2012-03-27

    Genome sequencing continues to be a rapidly evolving technology, yet most downstream aspects of genome annotation pipelines remain relatively stable or are even being abandoned. To date, the perceived value of manual curation for genome annotations is not offset by the real cost and time associated with the process. In order to balance the large number of sequences generated, the annotation process is now performed almost exclusively in an automated fashion for most genome sequencing projects. One possible way to reduce errors inherent to automated computational annotations is to apply data from 'omics' measurements (i.e. transcriptional and proteomic) to the un-annotated genome with a proteogenomic-based approach. This approach does require additional experimental and bioinformatics methods to include omics technologies; however, the approach is readily automatable and can benefit from rapid developments occurring in those research domains as well. The annotation process can be improved by experimental validation of transcription and translation and aid in the discovery of annotation errors. Here the concept of annotation refinement has been extended to include a comparative assessment of genomes across closely related species, as is becoming common in sequencing efforts. Transcriptomic and proteomic data derived from three highly similar pathogenic Yersiniae (Y. pestis CO92, Y. pestis pestoides F, and Y. pseudotuberculosis PB1/+) was used to demonstrate a comprehensive comparative omic-based annotation methodology. Peptide and oligo measurements experimentally validated the expression of nearly 40% of each strain's predicted proteome and revealed the identification of 28 novel and 68 previously incorrect protein-coding sequences (e.g., observed frameshifts, extended start sites, and translated pseudogenes) within the three current Yersinia genome annotations. Gene loss is presumed to play a major role in Y. pestis acquiring its niche as a virulent pathogen, thus

  17. River Protection Project information systems assessment

    SciTech Connect

    JOHNSON, A.L.

    1999-07-28

    The Information Systems Assessment Report documents the results from assessing the Project Hanford Management Contract (PHMC) Hanford Data Integrator 2000 (HANDI 2000) system, Business Management System (BMS) and Work Management System phases (WMS), with respect to the System Engineering Capability Assessment Model (CAM). The assessment was performed in accordance with the expectations stated in the fiscal year (FY) 1999 Performance Agreement 7.1.1, item (2) which reads, ''Provide an assessment report on the selected Integrated Information System by July 31, 1999.'' This report assesses the BMS and WMS as implemented and planned for the River Protection Project (RPP). The systems implementation is being performed under the PHMC HANDI 2000 information system project. The project began in FY 1998 with the BMS, proceeded in FY 1999 with the Master Equipment List portion of the WMS, and will continue the WMS implementation as funding provides. This report constitutes an interim quality assessment providing information necessary for planning RPP's information systems activities. To avoid confusion, HANDI 2000 will be used when referring to the entire system, encompassing both the BMS and WMS. A graphical depiction of the system is shown in Figure 2-1 of this report.

  18. Project Assessment Skills Web Application

    NASA Technical Reports Server (NTRS)

    Goff, Samuel J.

    2013-01-01

    The purpose of this project is to utilize Ruby on Rails to create a web application that will replace a spreadsheet keeping track of training courses and tasks. The goal is to create a fast and easy to use web application that will allow users to track progress on training courses. This application will allow users to update and keep track of all of the training required of them. The training courses will be organized by group and by user, making readability easier. This will also allow group leads and administrators to get a sense of how everyone is progressing in training. Currently, updating and finding information from this spreadsheet is a long and tedious task. By upgrading to a web application, finding and updating information will be easier than ever as well as adding new training courses and tasks. Accessing this data will be much easier in that users just have to go to a website and log in with NDC credentials rather than request the relevant spreadsheet from the holder. In addition to Ruby on Rails, I will be using JavaScript, CSS, and jQuery to help add functionality and ease of use to my web application. This web application will include a number of features that will help update and track progress on training. For example, one feature will be to track progress of a whole group of users to be able to see how the group as a whole is progressing. Another feature will be to assign tasks to either a user or a group of users. All of these together will create a user friendly and functional web application.

  19. A Pluralistic View of Early Assessment: The Project Spectrum Approach.

    ERIC Educational Resources Information Center

    Wexler-Sherman, Carey; And Others

    1988-01-01

    Project Spectrum is a pilot project to fuse assessment and the curriculum of preschool and daycare programs. The article reviews standard assessment methods, describes alternative notions of intelligence, and examines the implementation of Project Spectrum in detail. (JL)

  20. Project Assessment Framework through Design (PAFTD) - A Project Assessment Framework in Support of Strategic Decision Making

    NASA Technical Reports Server (NTRS)

    Depenbrock, Brett T.; Balint, Tibor S.; Sheehy, Jeffrey A.

    2014-01-01

    Research and development organizations that push the innovation edge of technology frequently encounter challenges when attempting to identify an investment strategy and to accurately forecast the cost and schedule performance of selected projects. Fast moving and complex environments require managers to quickly analyze and diagnose the value of returns on investment versus allocated resources. Our Project Assessment Framework through Design (PAFTD) tool facilitates decision making for NASA senior leadership to enable more strategic and consistent technology development investment analysis, beginning at implementation and continuing through the project life cycle. The framework takes an integrated approach by leveraging design principles of useability, feasibility, and viability and aligns them with methods employed by NASA's Independent Program Assessment Office for project performance assessment. The need exists to periodically revisit the justification and prioritization of technology development investments as changes occur over project life cycles. The framework informs management rapidly and comprehensively about diagnosed internal and external root causes of project performance.

  1. Project Approval, Environmental Assessment and Public Participation.

    ERIC Educational Resources Information Center

    Elder, P. S.

    1982-01-01

    Presents a case study of a heavy oil project proposed by Esso Resources Canada Limited at Cold Lake, Alberta, Canada. Focuses on the approval process, environmental and social impact assessments, and public participation. Evaluates the case and makes recommendations concerning the approval process. (DC)

  2. Needs Assessment Project: Factor Analytic Studies.

    ERIC Educational Resources Information Center

    Shively, Joe E.; Holcomb, Zelda J.

    Data collected by the Appalachia Educational Laboratory (AEL) in its 1980 Needs Assessment Project was reduced to eight marker variables for use in subsequent individual state factor analyses. These variables concern (1) high need family situations; (2) effective career education/guidance; (3) increased school capacity for working with families;…

  3. Facility Interface Capability Assessment (FICA) project report

    SciTech Connect

    Pope, R.B.; MacDonald, R.R.; Viebrock, J.M.; Mote, N.

    1995-09-01

    The US Department of Energy`s (DOE) Office of Civilian Radioactive Waste Management (OCRWM) is responsible for developing the Civilian Radioactive Waste Management System (CRWMS) to accept spent nuclear fuel from commercial facilities. The objective of the Facility Interface Capability Assessment (FICA) project was to assess the capability of each commercial spent nuclear fuel (SNF) storage facility, at which SNF is stored, to handle various SNF shipping casks. The purpose of this report is to present and analyze the results of the facility assessments completed within the FICA project. During Phase 1, the data items required to complete the facility assessments were identified and the database for the project was created. During Phase 2, visits were made to 122 facilities on 76 sites to collect data and information, the database was updated, and assessments of the cask-handling capabilities at each facility were performed. Each assessment of cask-handling capability contains three parts: the current capability of the facility (planning base); the potential enhanced capability if revisions were made to the facility licensing and/or administrative controls; and the potential enhanced capability if limited physical modifications were made to the facility. The main conclusion derived from the planning base assessments is that the current facility capabilities will not allow handling of any of the FICA Casks at 49 of the 122 facilities evaluated. However, consideration of potential revisions and/or modifications showed that all but one of the 49 facilities could be adapted to handle at least one of the FICA Casks. For this to be possible, facility licensing, administrative controls, and/or physical aspects of the facility would need to be modified.

  4. Confined Zone Dispersion Project: A DOE assessment

    SciTech Connect

    1999-11-30

    The goal of the US Department of Energy (DOE) Clean Coal Technology (CCT) program is to furnish the energy marketplace with a number of advanced, more efficient, and environmentally responsible coal utilization technologies through demonstration projects. These projects seek to establish the commercial feasibility of the most promising advanced coal technologies that have developed beyond the proof-of-concept (POC) stage. This document serves as a DOE post-project assessment of the Confined Zone Dispersion Project in CCT Round 3. In 1990, Bechtel Corporation entered into a cooperative agreement to conduct the demonstration project. The Seward Power Station of Pennsylvania Electric Company (now GPU Genco) was the host site. DOE funded 43 percent of the total project cost of $12,173,000. The project was started in June 1990 and was scheduled to be completed in June 1993. As a result of various operating problems, the schedule was extended into 1994 without additional cost to DOE. Bechtel provided the additional financing and GPU Genco provided electricity, steam, and water to operate the unit. The independent evaluation contained herein is based primarily on information from Bechtel's final technical report (1994) as well as other references cited. Confined Zone Dispersion (CZD) is a flue gas desulfurization (FGD) process that removes sulfur dioxide (SO{sub 2}). A finely atomized slurry of reactive lime, calcium hydroxide or Ca(OH){sub 2} is injected into the flue-gas duct work, between the air preheater and the second-stage ESP. The lime reacts with the SO{sub 2}, forming dry solid reaction products. The downstream ESP captures the 2 reaction products along with the fly ash entrained in the flue gas. The CZD process was demonstrated on Unit 5, a 147-MWe utility unit with two flue gas ducts. One of the ducts was extended to provide the requisite residence time and retrofitted with the CZD lime injection equipment.

  5. Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models

    SciTech Connect

    Benedict, Matthew N.; Mundy, Michael B.; Henry, Christopher S.; Chia, Nicholas; Price, Nathan D.; Maranas, Costas D.

    2014-10-16

    Genome-scale metabolic models provide a powerful means to harness information from genomes to deepen biological insights. With exponentially increasing sequencing capacity, there is an enormous need for automated reconstruction techniques that can provide more accurate models in a short time frame. Current methods for automated metabolic network reconstruction rely on gene and reaction annotations to build draft metabolic networks and algorithms to fill gaps in these networks. However, automated reconstruction is hampered by database inconsistencies, incorrect annotations, and gap filling largely without considering genomic information. Here we develop an approach for applying genomic information to predict alternative functions for genes and estimate their likelihoods from sequence homology. We show that computed likelihood values were significantly higher for annotations found in manually curated metabolic networks than those that were not. We then apply these alternative functional predictions to estimate reaction likelihoods, which are used in a new gap filling approach called likelihood-based gap filling to predict more genomically consistent solutions. To validate the likelihood-based gap filling approach, we applied it to models where essential pathways were removed, finding that likelihood-based gap filling identified more biologically relevant solutions than parsimony-based gap filling approaches. We also demonstrate that models gap filled using likelihood-based gap filling provide greater coverage and genomic consistency with metabolic gene functions compared to parsimony-based approaches. Interestingly, despite these findings, we found that likelihoods did not significantly affect consistency of gap filled models with Biolog and knockout lethality data. This indicates that the phenotype data alone cannot necessarily be used to discriminate between alternative solutions for gap filling and therefore, that the use of other information is necessary to

  6. Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models

    DOE PAGES

    Benedict, Matthew N.; Mundy, Michael B.; Henry, Christopher S.; Chia, Nicholas; Price, Nathan D.; Maranas, Costas D.

    2014-10-16

    Genome-scale metabolic models provide a powerful means to harness information from genomes to deepen biological insights. With exponentially increasing sequencing capacity, there is an enormous need for automated reconstruction techniques that can provide more accurate models in a short time frame. Current methods for automated metabolic network reconstruction rely on gene and reaction annotations to build draft metabolic networks and algorithms to fill gaps in these networks. However, automated reconstruction is hampered by database inconsistencies, incorrect annotations, and gap filling largely without considering genomic information. Here we develop an approach for applying genomic information to predict alternative functions for genesmore » and estimate their likelihoods from sequence homology. We show that computed likelihood values were significantly higher for annotations found in manually curated metabolic networks than those that were not. We then apply these alternative functional predictions to estimate reaction likelihoods, which are used in a new gap filling approach called likelihood-based gap filling to predict more genomically consistent solutions. To validate the likelihood-based gap filling approach, we applied it to models where essential pathways were removed, finding that likelihood-based gap filling identified more biologically relevant solutions than parsimony-based gap filling approaches. We also demonstrate that models gap filled using likelihood-based gap filling provide greater coverage and genomic consistency with metabolic gene functions compared to parsimony-based approaches. Interestingly, despite these findings, we found that likelihoods did not significantly affect consistency of gap filled models with Biolog and knockout lethality data. This indicates that the phenotype data alone cannot necessarily be used to discriminate between alternative solutions for gap filling and therefore, that the use of other information is necessary

  7. Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models.

    PubMed

    Benedict, Matthew N; Mundy, Michael B; Henry, Christopher S; Chia, Nicholas; Price, Nathan D

    2014-10-01

    Genome-scale metabolic models provide a powerful means to harness information from genomes to deepen biological insights. With exponentially increasing sequencing capacity, there is an enormous need for automated reconstruction techniques that can provide more accurate models in a short time frame. Current methods for automated metabolic network reconstruction rely on gene and reaction annotations to build draft metabolic networks and algorithms to fill gaps in these networks. However, automated reconstruction is hampered by database inconsistencies, incorrect annotations, and gap filling largely without considering genomic information. Here we develop an approach for applying genomic information to predict alternative functions for genes and estimate their likelihoods from sequence homology. We show that computed likelihood values were significantly higher for annotations found in manually curated metabolic networks than those that were not. We then apply these alternative functional predictions to estimate reaction likelihoods, which are used in a new gap filling approach called likelihood-based gap filling to predict more genomically consistent solutions. To validate the likelihood-based gap filling approach, we applied it to models where essential pathways were removed, finding that likelihood-based gap filling identified more biologically relevant solutions than parsimony-based gap filling approaches. We also demonstrate that models gap filled using likelihood-based gap filling provide greater coverage and genomic consistency with metabolic gene functions compared to parsimony-based approaches. Interestingly, despite these findings, we found that likelihoods did not significantly affect consistency of gap filled models with Biolog and knockout lethality data. This indicates that the phenotype data alone cannot necessarily be used to discriminate between alternative solutions for gap filling and therefore, that the use of other information is necessary to

  8. A review of methodological factors in performance assessments of time-varying aircraft noise effects. [with annotated bibliography

    NASA Technical Reports Server (NTRS)

    Coates, G. D.; Alluisi, E. A.; Adkins, C. J., Jr.

    1977-01-01

    Literature on the effects of general noise on human performance is reviewed in an attempt to identify (1) those characteristics of noise that have been found to affect human performance; (2) those characteristics of performance most likely to be affected by the presence of noise, and (3) those characteristics of the performance situation typically associated with noise effects. Based on the characteristics identified, a theoretical framework is proposed that will permit predictions of possible effects of time-varying aircraft-type noise on complex human performance. An annotated bibliography of 50 articles is included.

  9. Ecological Compliance Assessment Project: 1994 Summary report

    SciTech Connect

    Brandt, C.A.

    1994-11-01

    The Ecological Compliance Assessment Project (ECAP) began full operation on March 1, 1994. The project is designed around a baseline environmental data concept that includes intensive biological field surveys of key areas of the Hanford Site where the majority of Site activities occur. These surveys are conducted at biologically appropriate times of year to ensure that the data gathered are current and accurate. The data are entered into the ECAP database, which serves as a reference for the evaluation of review requests coming in to the project. This methodology provided the basis for over 90 percent of the review requests received. Field surveys conducted under ECAP are performed to document occurrence information for species of concern and to obtain habitat descriptions. There are over 200 species of concern on the Hanford Site, including plants, birds, mammals, reptiles, amphibians, fish, and invertebrates. In addition, Washington State has designated mature sagebrush-steppe habitat as a Priority Habitat meriting special protective measures. Of the projects reviewed, 17 resulted or will result in impacts to species or habitats of concern on the Hanford Site. The greatest impact has been on big sagebrush habitat. Most of the impact has been or will be within the 600 Area of the Site.

  10. Annotated Catalog of Bilingual Vocational Training Materials.

    ERIC Educational Resources Information Center

    Miranda (L.) and Associates, Bethesda, MD.

    This catalog contains annotations for 170 bilingual vocational training materials. Most of the materials are written in English, but materials written in 13 source languages and directed toward speakers of 17 target languages are provided. Annotations are provided for the following different types of documents: administrative, assessment and…

  11. Re-Entry Women: Annotated Bibliography.

    ERIC Educational Resources Information Center

    Porterfield, Patricia Lamb

    This is an annotated bibliography on topics related to reentry women. Topic categories include general and administrative issues, programs and services, needs assessment and evaluation, counseling and personal development, career planning and job placement, curriculum and instruction, admissions and recruiting, and financial aid. Annotations cite…

  12. Klickitat Cogeneration Project : Final Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration; Klickitat Energy Partners

    1994-09-01

    To meet BPA`s contractual obligation to supply electrical power to its customers, BPA proposes to acquire power generated by Klickitat Cogeneration Project. BPA has prepared an environmental assessment evaluating the proposed project. Based on the EA analysis, BPA`s proposed action is not a major Federal action significantly affecting the quality of the human environment within the meaning of the National Environmental Policy Act of 1969 for the following reasons: (1)it will not have a significant impact land use, upland vegetation, wetlands, water quality, geology, soils, public health and safety, visual quality, historical and cultural resources, recreation and socioeconomics, and (2) impacts to fisheries, wildlife resources, air quality, and noise will be temporary, minor, or sufficiently offset by mitigation. Therefore, the preparation of an environmental impact statement is not required and BPA is issuing this FONSI (Finding of No Significant Impact).

  13. Session: Pre-development project risk assessment

    SciTech Connect

    Curry, Richard; Linehan, Andy

    2004-09-01

    This second session at the Wind Energy and Birds/Bats workshop consisted of two presentations followed by a discussion/question and answer period. The focus of the presentations was on the practices and methodologies used in the wind energy industry for assessing risk to birds and bats at candidate project sites. Presenters offered examples of pre-development siting evaluation requirements set by certain states. Presentation one was titled ''Practices and Methodologies and Initial Screening Tools'' by Richard Curry of Curry and Kerlinger, LLC. Presentation two was titled ''State of the Industry in the Pacific Northwest'' by Andy Linehan, CH2MHILL.

  14. IV&V Project Assessment Process Validation

    NASA Technical Reports Server (NTRS)

    Driskell, Stephen

    2012-01-01

    The Space Launch System (SLS) will launch NASA's Multi-Purpose Crew Vehicle (MPCV). This launch vehicle will provide American launch capability for human exploration and travelling beyond Earth orbit. SLS is designed to be flexible for crew or cargo missions. The first test flight is scheduled for December 2017. The SLS SRR/SDR provided insight into the project development life cycle. NASA IV&V ran the standard Risk Based Assessment and Portfolio Based Risk Assessment to identify analysis tasking for the SLS program. This presentation examines the SLS System Requirements Review/System Definition Review (SRR/SDR), IV&V findings for IV&V process validation correlation to/from the selected IV&V tasking and capabilities. It also provides a reusable IEEE 1012 scorecard for programmatic completeness across the software development life cycle.

  15. Assessment of CO{sub 2} projections

    SciTech Connect

    Enting, I.G.; Wigley, T.M.L.; Heimann, M.

    1994-07-01

    Various projections of the relation between future CO{sub 2} concentrations and future emissions were undertaken as part of the scientific assessment for Working Group 1 of the Intergovernmental Panel on Climate Change. There were three type of calculation: (1) forward projections, calculating the atmospheric CO{sub 2} concentrations resulting from specified emission scenarios, (2) inverse calculations determining the emission rates that would be required to achieve stabilization of CO{sub 2} concentrations via specified pathways and (3) impulse response function calculations required for determining Global Warming Potentials. The use of a standardized set of conditions allows an intercomparison of models. The ocean models used in the calculations presented here span a range of forms from response function descriptions to general circulation models. The general issue for all levels of modelling is whether the model parameters can reasonably be regarded as being the same in the future as at present. Sensitivity studies explore other aspects of the uncertainties of such projections. This report documents the specifications, the models that were used and the results that were obtained. Some preliminary interpretations of the results are included.

  16. Regional Assessment of Supplementation Project. Status report

    SciTech Connect

    Not Available

    1991-10-01

    The Fish and Wildlife Program of the Northwest Power Planning Council (NPPC) prescribes several approaches to achieve its goal of doubling the salmon and steelhead runs of the Columbia River. Among those approaches are habitat restoration, improvements in adult and juvenile passage at dams and artificial propagation. Supplementation will be a major part of the new hatchery programs. The purpose of the Regional Assessment of Supplementation Project (RASP) is to provide an overview of ongoing and planned supplementation activities, to construct a conceptual framework and model for evaluating the potential benefits and risks of supplementation and to develop a plan for better regional coordination of research and monitoring and evaluation of supplementation. RASP has completed its first year of work. Progress toward meeting the first year`s objectives and recommendations for future tasks are contained in this report.

  17. Regional Assessment of Supplementation Project : Status Report.

    SciTech Connect

    Unknown author

    1991-10-01

    The Fish and Wildlife Program of the Northwest Power Planning Council (NPPC) prescribes several approaches to achieve its goal of doubling the salmon and steelhead runs of the Columbia River. Among those approaches are habitat restoration, improvements in adult and juvenile passage at dams and artificial propagation. Supplementation will be a major part of the new hatchery programs. The purpose of the Regional Assessment of Supplementation Project (RASP) is to provide an overview of ongoing and planned supplementation activities, to construct a conceptual framework and model for evaluating the potential benefits and risks of supplementation and to develop a plan for better regional coordination of research and monitoring and evaluation of supplementation. RASP has completed its first year of work. Progress toward meeting the first year's objectives and recommendations for future tasks are contained in this report.

  18. Final rapid reactivation project environmental assessment

    SciTech Connect

    1999-02-10

    The US Department of Energy (DOE) has prepared an environmental assessment (EA) for the Rapid Reactivation Project at Sandia National Laboratories, New Mexico. The EA analyzes the potential effects of a proposal to increase production of neutron generators from the current capability of 600 units per year up to 2,000 units per year. The project would use existing buildings and infrastructure to the maximum extent possible to meet the additional production needs. The increased production levels would necessitate modifications and additions involving a total area of approximately 26,290 gross square feet at Sandia National Laboratories, New Mexico, Technical Area 1. Additional production equipment would be procured and installed. The no-action alternative would be to continue production activities at the current capability of 600 units per year. The EA analyzes effects on health, safety, and air quality, resulting from construction and operation and associated cumulative effects. A detailed description of the proposed action and its environmental consequences is presented in the EA.

  19. Automated Knowledge Annotation for Dynamic Collaborative Environments

    SciTech Connect

    Cowell, Andrew J.; Gregory, Michelle L.; Marshall, Eric J.; McGrath, Liam R.

    2009-05-19

    This paper describes the Knowledge Encapsulation Framework (KEF), a suite of tools to enable automated knowledge annotation for modeling and simulation projects. This framework can be used to capture evidence (e.g., facts extracted from journal articles and government reports), discover new evidence (from similar peer-reviewed material as well as social media), enable discussions surrounding domain-specific topics and provide automatically generated semantic annotations for improved corpus investigation. The current KEF implementation is presented within a wiki environment, providing a simple but powerful collaborative space for team members to review, annotate, discuss and align evidence with their modeling frameworks.

  20. Semantic annotation of Web data applied to risk in food.

    PubMed

    Hignette, Gaëlle; Buche, Patrice; Couvert, Olivier; Dibie-Barthélemy, Juliette; Doussot, David; Haemmerlé, Ollivier; Mettler, Eric; Soler, Lydie

    2008-11-30

    A preliminary step to risk in food assessment is the gathering of experimental data. In the framework of the Sym'Previus project (http://www.symprevius.org), a complete data integration system has been designed, grouping data provided by industrial partners and data extracted from papers published in the main scientific journals of the domain. Those data have been classified by means of a predefined vocabulary, called ontology. Our aim is to complement the database with data extracted from the Web. In the framework of the WebContent project (www.webcontent.fr), we have designed a semi-automatic acquisition tool, called @WEB, which retrieves scientific documents from the Web. During the @WEB process, data tables are extracted from the documents and then annotated with the ontology. We focus on the data tables as they contain, in general, a synthesis of data published in the documents. In this paper, we explain how the columns of the data tables are automatically annotated with data types of the ontology and how the relations represented by the table are recognised. We also give the results of our experimentation to assess the quality of such an annotation.

  1. Galileo Reader and Annotator

    NASA Astrophysics Data System (ADS)

    Besomi, O.

    2011-06-01

    In his readings, Galileo made frequent use of annotations. Here, I will offer a general glance at them by discussing the case of the annotations to the Libra astronomica published in 1619 by Orazio Grassi, a Jesuit mathematician of the Collegio Romano. The annotations directly reflect Galileo's reaction to Grassi's book in a heated debate between the two astronomers. Galileo and Grassi had opposite ideas about the nature of the comets, which resulted in different scientific and theological implications. The annotations represent the starting point for Galileo's reply to the Libra, namely Il Saggiatore, which was published four years later and dedicated to the new pope Urban VIII.

  2. Direct functional assessment of the composite phenotype through multivariate projection strategies.

    PubMed

    Conesa, Ana; Bro, Rasmus; García-García, Francisco; Prats, José Manuel; Götz, Stefan; Kjeldahl, Karin; Montaner, David; Dopazo, Joaquín

    2008-12-01

    We present a novel approach for the analysis of transcriptomics data that integrates functional annotation of gene sets with expression values in a multivariate fashion, and directly assesses the relation of functional features to a multivariate space of response phenotypical variables. Multivariate projection methods are used to obtain new correlated variables for a set of genes that share a given function. These new functional variables are then related to the response variables of interest. The analysis of the principal directions of the multivariate regression allows for the identification of gene function features correlated with the phenotype. Two different transcriptomics studies are used to illustrate the statistical and interpretative aspects of the methodology. We demonstrate the superiority of the proposed method over equivalent approaches.

  3. Kalispell Maintenance Headquarters Project : Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration.

    1991-01-01

    The facilities needed to maintain and repair Bonneville Power Administration (BPA's) electrical equipment in northwest Montana are currently in two locations: A maintenance headquarters at the Kalispell Substation, and a temporary leased facility south of Kalispell. The present situation is not efficient. There is not enough space to accommodate the equipment needed at each site, and coordination and communication between the two sites is difficult. Also, two sites means duplication of equipment and facilities. BPA needs a single, centralized facility that would efficiently accommodate all the area's maintenance activities and equipment. BPA proposes to build a maintenance headquarters facility consisting of 2 to 4 single-story buildings totaling about 35,000 square feet (office spaces and workshop areas); an open-ended vehicle storage building (carport style); a fenced-in storage year; a storage building for flammables, herbicides, and hazardous wastes; and a parking lot. The facility would require developing about 6 to 10 acres of land. Two sites are being considered for the proposed project (see the attached map for locations). This report is the environmental assessment of the two options.

  4. Assessing the Relationship between Ethical Project Management and Information Technology Project Success

    ERIC Educational Resources Information Center

    Howell, Byron Winter

    2010-01-01

    The purpose of this quantitative study was to assess the relationship between ethical project management and information technology (IT) project success. The success of IT projects is important for organizational success, but the rate of IT projects is historically low, costing billions of dollars annually. Using four key ethical variables…

  5. Research in the Virginia Community College System; An Annotated Bibliography, Topical Listing, and College Listing of Research Projects Conducted at Virginia Community Colleges through July 15, 1974.

    ERIC Educational Resources Information Center

    Trufant, John E.; Kelly, Sarah J.

    This document provides a means of improving and formalizing the communication of institutional research conducted at the 23 colleges in the Virginia Community College System. Over 160 reports are arranged in three sections. The first section annotates 44 of the studies, which were selected on the basis of anticipated interest, quality of study…

  6. Assessment and Improvement of Related Services (AIRS) Project. Final Report.

    ERIC Educational Resources Information Center

    McClelland, Robert A.; Hirata, Glenn T.

    The document presents the final report of the Assessment and Improvement of Related Services (AIRS) Project, an effort to assess the impact and effectiveness of special education related services in Hawaii. Each of the four project objectives focused on accomplishment of one of the evaluation types specified in the Context-Input-Process-Product…

  7. Multiple Intelligences: Curriculum and Assessment Project. Final Report

    ERIC Educational Resources Information Center

    Hyland, Aine, Ed.

    2011-01-01

    The "Multiple Intelligences, Curriculum and Assessment Project" at University College Cork was a collaborative project carried out between 1995 and 1999. The key research question focused on whether Howard Gardner's theory of Multiple Intelligences could be applied to, and enhance, aspects of curriculum and assessment at primary and second level…

  8. The Assessment of Minority Groups: An Annotated Bibliography. ERIC-IRCD Urban Disadvantaged Series, Number 34, August 1973.

    ERIC Educational Resources Information Center

    Barabas, Jean, Comp.

    The materials cited here represent information on such diverse but interrelated areas as: methods of assessing achievement, intelligence, personality factors, and attitudes; effects of testing on self concept and employment opportunities; prediction of academic success; reliability and validity of specific tests; criticism of the methods and use…

  9. Annotation extension through protein family annotation coherence metrics

    PubMed Central

    Bastos, Hugo P.; Clarke, Luka A.; Couto, Francisco M.

    2013-01-01

    Protein functional annotation consists in associating proteins with textual descriptors elucidating their biological roles. The bulk of annotation is done via automated procedures that ultimately rely on annotation transfer. Despite a large number of existing protein annotation procedures the ever growing protein space is never completely annotated. One of the facets of annotation incompleteness derives from annotation uncertainty. Often when protein function cannot be predicted with enough specificity it is instead conservatively annotated with more generic terms. In a scenario of protein families or functionally related (or even dissimilar) sets this leads to a more difficult task of using annotations to compare the extent of functional relatedness among all family or set members. However, we postulate that identifying sub-sets of functionally coherent proteins annotated at a very specific level, can help the annotation extension of other incompletely annotated proteins within the same family or functionally related set. As an example we analyse the status of annotation of a set of CAZy families belonging to the Polysaccharide Lyase class. We show that through the use of visualization methods and semantic similarity based metrics it is possible to identify families and respective annotation terms within them that are suitable for possible annotation extension. Based on our analysis we then propose a semi-automatic methodology leading to the extension of single annotation terms within these partially annotated protein sets or families. PMID:24130572

  10. Portfolio Assessment of an Undergraduate Group Project

    ERIC Educational Resources Information Center

    Kuisma, Raija

    2007-01-01

    Students in the Physiotherapy Programme carried out a group project in their final year of studies. The objectives of the project were that the students learn and appreciate the process and activities involved in research, acquire deeper understanding of a topic in their professional interest, learn to work as a team, manage their own time,…

  11. Assessment of the Projects with Industry Program.

    ERIC Educational Resources Information Center

    Reisner, Elizabeth R.; And Others

    A study evaluated the Projects With Industry (PWI) program. (Authorized in 1968 to provide funding opportunities to organizations for the purpose of assisting severely disabled persons in obtaining competitive employment, the PWI program has provided support to projects that involve private sector representatives in the design of placement,…

  12. Environmental Assessment : Happy Valley [Substation Project].

    SciTech Connect

    United States. Bonneville Power Administration.

    1982-05-01

    The proposed Happy Valley project consists of construction of a new BPA customer service 69-kV substation south of Sequim in Clallam County, Washington. A tie line, to be constructed by the customer as part of this project, will link the new BPA facility to the existing customer's transmission system in the area. This project responds to rapid load growth in the Olympic Peninsula, and will strengthen the existing BPA system and interconnected utility systems. It will reduce transmission losses presently incurred, especially on the BPA system supplying power to the Olympic Peninsula. This report describes the potential environmental impact of the proposed actions. 2 figs., 1 tab.

  13. Solar Resource and Meteorological Assessment Project (SOLRMAP)

    SciTech Connect

    Wilcox, S.

    2008-10-29

    The purpose of this collaborative project between NREL and industry is: (1) provide high quality solar measurements in support of deploying Concentrating Solar Thermal projects; and (2) provide NREL with research-quality data sets for refining solar models and developing solar forecasting capabilities. The benefits of this project are: (1) lends NREL credibility to data sets used for economic analyses and commercial justification; (2) helps minimize costly mistakes in estimating capacity and economic return on investment; (3) helps maximize the development of projects for which adequate solar resources exist; (4) provides data to NREL for research to improve/validate models and explore RA innovations; and (5) helps maintain collaborative channels between NREL and industry.

  14. Assessing Projection Bias in Consumers' Food Preferences.

    PubMed

    de-Magistris, Tiziana; Gracia, Azucena

    2016-01-01

    The aim of this study is to test whether projection bias exists in consumers' purchasing decisions for food products. To achieve our aim, we used a non-hypothetical experiment (i.e., experimental auction), where hungry and non-hungry participants were incentivized to reveal their willingness to pay (WTP). The results confirm the existence of projection bias when consumers made their decisions on food products. In particular, projection bias existed because currently hungry participants were willing to pay a higher price premium for cheeses than satiated ones, both in hungry and satiated future states. Moreover, participants overvalued the food product more when they were delivered in the future hungry condition than in the satiated one. Our study provides clear, quantitative and meaningful evidence of projection bias because our findings are based on economic valuation of food preferences. Indeed, the strength of this study is that findings are expressed in terms of willingness to pay which is an interpretable amount of money.

  15. Directory of country environmental studies, 1993. An annotated bibliography of environmental and natural resource profiles and assessments

    SciTech Connect

    Tunstall, D.B.; van der Wansem, M.

    1992-11-01

    The 1993 edition of the Directory provides detailed citations and abstracts for 357 major natural resource and environmental studies (257 of which were added since the 1990 edition) covering 129 developing countries and 12 regional groupings. Most of the studies (93%) were prepared between 1987 and 1992. Included are 66 national reports prepared for the U.N. Conference on Environment and Development, held in Rio de Janeiro in June 1992. Thirty-three countries, including Algeria, Bhutan, Cuba, Republic of Korea, Laos, Namibia, South Africa, Suriname, Taiwan, and Venezuela, are new to this edition of the directory, which focuses on reports that link quantitative assessment of a country's natural resources to economic development and the maintenance of ecosystems, with particular emphasis on natural resource management strategies and action plans.

  16. Technology Assessment Requirements for Programs and Projects

    NASA Technical Reports Server (NTRS)

    Bilbro, James W.

    2006-01-01

    Program/project uncertainty can most simply be defined as the unpredictability of its outcome. As might be expected, the degree of uncertainty depends substantially on program/project type. For hi-tech programs/projects, uncertainty all too frequently translates into schedule slips, cost overruns and occasionally even to cancellations or failures - consummations root cause of such events is often attributed to inadequate definition of requirements. If such were indeed the root cause, then correcting the situation would simply be a matter of requiring better requirements definition, but since history seems frequently to repeat itself, this must not be the case - at least not in total. There are in fact many contributors to schedule slips, cost overruns, project cancellations and failures, among them lack of adequate requirements definition. The case can be made, however, that many of these contributors are related to the degree of uncertainty at the outset of the project. And further, that a dominant factor in the degree of uncertainty is the maturity of the technology required to bring the project to fruition. This presentation discusses the concept of relating degrees of uncertainty to Technology Readiness Levels (TRL) and their associated Advancement Degree of Difficulty (AD2) levels. It also briefly describes a quantifiable process to establish the appropriate TRL for a given technology and quantifies through the AD2 what is required to move it from its current TRL to the desired TRL in order to reduce risk and maximize likelihood of successfully infusing the technology.

  17. Spiral and Project-Based Learning with Peer Assessment in a Computer Science Project Management Course

    ERIC Educational Resources Information Center

    Jaime, Arturo; Blanco, José Miguel; Domínguez, César; Sánchez, Ana; Heras, Jónathan; Usandizaga, Imanol

    2016-01-01

    Different learning methods such as project-based learning, spiral learning and peer assessment have been implemented in science disciplines with different outcomes. This paper presents a proposal for a project management course in the context of a computer science degree. Our proposal combines three well-known methods: project-based learning,…

  18. Involving Assessment Buddies in the Assessment of Design Project Work

    ERIC Educational Resources Information Center

    Osmond, Jane; Clough, Brian

    2012-01-01

    This paper discusses the impact of a specially developed assessment and feedback system implemented within a second year industrial design module at Coventry University, UK. The "Assessment Buddy" system was developed in response to the need for a successful assessment and feedback method that could cope with the complexities of a creative…

  19. The Assessment of Performance in Science Project.

    ERIC Educational Resources Information Center

    Driver, Rosalind; Worsley, Christopher

    1979-01-01

    Described are national methods of assessing and monitoring the achievement in science of students of 11, 13, and 16 years old in England and Wales. The tasks of the Assessment of Performance Unit (APU), a unit within the Department of Education and Science, are also described. (HM)

  20. Using the CAS Standards in Assessment Projects

    ERIC Educational Resources Information Center

    Dean, Laura A.

    2013-01-01

    This chapter provides an overview of the use of professional standards of practice in assessment and of the Council for the Advancement of Standards in Higher Education (CAS). It outlines a model for conducting program self-studies and discusses the importance of implementing change based on assessment results.

  1. Spiral and Project-Based Learning with Peer Assessment in a Computer Science Project Management Course

    NASA Astrophysics Data System (ADS)

    Jaime, Arturo; Blanco, José Miguel; Domínguez, César; Sánchez, Ana; Heras, Jónathan; Usandizaga, Imanol

    2016-06-01

    Different learning methods such as project-based learning, spiral learning and peer assessment have been implemented in science disciplines with different outcomes. This paper presents a proposal for a project management course in the context of a computer science degree. Our proposal combines three well-known methods: project-based learning, spiral learning and peer assessment. Namely, the course is articulated during a semester through the structured (progressive and incremental) development of a sequence of four projects, whose duration, scope and difficulty of management increase as the student gains theoretical and instrumental knowledge related to planning, monitoring and controlling projects. Moreover, the proposal is complemented using peer assessment. The proposal has already been implemented and validated for the last 3 years in two different universities. In the first year, project-based learning and spiral learning methods were combined. Such a combination was also employed in the other 2 years; but additionally, students had the opportunity to assess projects developed by university partners and by students of the other university. A total of 154 students have participated in the study. We obtain a gain in the quality of the subsequently projects derived from the spiral project-based learning. Moreover, this gain is significantly bigger when peer assessment is introduced. In addition, high-performance students take advantage of peer assessment from the first moment, whereas the improvement in poor-performance students is delayed.

  2. Preliminary assessment of potential CDM early start projects in Brazil

    SciTech Connect

    Meyers, S.; Sathaye, J.; Lehman, B.; Schumacher, K.; van Vliet, O.; Moreira, J.R.

    2000-11-01

    The Brazil/US Aspen Global Forum on Climate Change Policies and Programs has facilitated a dialogue between key Brazil and US public and private sector leaders on the subject of the Clean Development Mechanism (CDM). With support from the US government, a cooperative effort between Lawrence Berkeley National Laboratory and the University of Sao Paulo conducted an assessment of a number of projects put forth by Brazilian sponsors. Initially, we gathered information and conducted a screening assessment for ten projects in the energy sector and six projects in the forestry sector. Some of the projects appeared to offer greater potential to be attractive for CDM, or had better information available. We then conducted a more detailed assessment of 12 of these projects, and two other projects that were submitted after the initial screening. An important goal was to assess the potential impact of Certified Emission Reductions (CERs) on the financial performance of projects. With the exception of the two forestry-based fuel displacement projects, the impact of CERs on the internal rate of return (IRR) is fairly small. This is true for both the projects that displace grid electricity and those that displace local (diesel-based) electricity production. The relative effect of CERs is greater for projects whose IRR without CERs is low. CERs have a substantial effect on the IRR of the two short-rotation forestry energy substitution projects. One reason is that the biofuel displaces coke and oil, both of which are carbon-intensive. Another factor is that the product of these projects (charcoal and woodfuel, respectively) is relatively low value, so the revenue from carbon credits has a strong relative impact. CERs also have a substantial effect on the NPV of the carbon sequestration projects. Financial and other barriers pose a challenge for implementation of most of the projects. In most cases, the sponsor lacks sufficient capital, and loans are available only at high interest

  3. Assessing Projection Bias in Consumers’ Food Preferences

    PubMed Central

    de-Magistris, Tiziana; Gracia, Azucena

    2016-01-01

    The aim of this study is to test whether projection bias exists in consumers’ purchasing decisions for food products. To achieve our aim, we used a non-hypothetical experiment (i.e., experimental auction), where hungry and non-hungry participants were incentivized to reveal their willingness to pay (WTP). The results confirm the existence of projection bias when consumers made their decisions on food products. In particular, projection bias existed because currently hungry participants were willing to pay a higher price premium for cheeses than satiated ones, both in hungry and satiated future states. Moreover, participants overvalued the food product more when they were delivered in the future hungry condition than in the satiated one. Our study provides clear, quantitative and meaningful evidence of projection bias because our findings are based on economic valuation of food preferences. Indeed, the strength of this study is that findings are expressed in terms of willingness to pay which is an interpretable amount of money. PMID:26828930

  4. Health Communication and Literacy: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Beveridge, Jennifer

    This annotated bibliography lists publications and World Wide Web sites dealing with health communication and literacy. The 51 publications, which were all published between 1982 and 1998, contain information about and/or for use in the following areas: assessment, assessment tools, elderly adults, empowerment, maternal and child health, patient…

  5. Project 6: Cumulative Risk Assessment (CRA) Methods and Applications

    EPA Science Inventory

    Project 6: CRA Methods and Applications addresses the need to move beyond traditional risk assessment practices by developing CRA methods to integrate and evaluate impacts of chemical and nonchemical stressors on the environment and human health. Project 6 has three specific obje...

  6. Undergraduate Lab Project in Personality Assessment: Measurement of Anal Character.

    ERIC Educational Resources Information Center

    Davidson, William B.

    1987-01-01

    This article describes a project which required students to write assessment items for a personality inventory. The 104 items generated were administered to 126 subjects. Results showed the items were reasonably reliable and valid. The pedagogical value of the project is discussed. (Author/JDH)

  7. The ECLSS Advanced Automation Project Evolution and Technology Assessment

    NASA Technical Reports Server (NTRS)

    Dewberry, Brandon S.; Carnes, James R.; Lukefahr, Brenda D.; Rogers, John S.; Rochowiak, Daniel M.; Mckee, James W.; Benson, Brian L.

    1990-01-01

    Viewgraphs on Environmental Control and Life Support System (ECLSS) advanced automation project evolution and technology assessment are presented. Topics covered include: the ECLSS advanced automation project; automatic fault diagnosis of ECLSS subsystems descriptions; in-line, real-time chemical and microbial fluid analysis; and object-oriented, distributed chemical and microbial modeling of regenerative environmental control systems description.

  8. Antelope-Fossil Rebuild Project : Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration.

    1992-04-01

    The Columbia Power Cooperative Association (CPCA), Monument, Oregon, proposes to upgrade a 69-kV transmission line in Wasco and Wheeler Counties, Oregon, between the Antelope Substation and the Bonneville Power Administration's (BPA) Fossil Substation. The project involves rebuilding and reconductoring 23.2 miles of transmission line, including modifying it for future use at 115 kV. Related project activities will include setting new wood pole structures, removing and disposing of old structures, conductors, and insulators, and stringing new conductor, all within the existing right-of-way. No new access roads will be required. A Borrower's Environmental Report was prepared for the 1992--1993 Work Plan for Columbia Power Cooperative Association in March 1991. This report investigated cultural resources, threatened or endangered species, wetlands, and floodplains, and other environmental issues, and included correspondence with appropriate Federal, state, and local agencies. The report was submitted to the Rural Electrification Administration for their use in preparing their environmental documentation for the project.

  9. Antelope-Fossil Rebuild Project : Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration.

    1992-04-01

    The Columbia Power Cooperative Association (CPCA), Monument, Oregon, proposes to upgrade a 69-kV transmission line in Wasco and Wheeler Counties, Oregon, between the Antelope Substation and the Bonneville Power Administration`s (BPA) Fossil Substation. The project involves rebuilding and reconductoring 23.2 miles of transmission line, including modifying it for future use at 115 kV. Related project activities will include setting new wood pole structures, removing and disposing of old structures, conductors, and insulators, and stringing new conductor, all within the existing right-of-way. No new access roads will be required. A Borrower`s Environmental Report was prepared for the 1992--1993 Work Plan for Columbia Power Cooperative Association in March 1991. This report investigated cultural resources, threatened or endangered species, wetlands, and floodplains, and other environmental issues, and included correspondence with appropriate Federal, state, and local agencies. The report was submitted to the Rural Electrification Administration for their use in preparing their environmental documentation for the project.

  10. Collaborative annotation of 3D crystallographic models.

    PubMed

    Hunter, J; Henderson, M; Khan, I

    2007-01-01

    This paper describes the AnnoCryst system-a tool that was designed to enable authenticated collaborators to share online discussions about 3D crystallographic structures through the asynchronous attachment, storage, and retrieval of annotations. Annotations are personal comments, interpretations, questions, assessments, or references that can be attached to files, data, digital objects, or Web pages. The AnnoCryst system enables annotations to be attached to 3D crystallographic models retrieved from either private local repositories (e.g., Fedora) or public online databases (e.g., Protein Data Bank or Inorganic Crystal Structure Database) via a Web browser. The system uses the Jmol plugin for viewing and manipulating the 3D crystal structures but extends Jmol by providing an additional interface through which annotations can be created, attached, stored, searched, browsed, and retrieved. The annotations are stored on a standardized Web annotation server (Annotea), which has been extended to support 3D macromolecular structures. Finally, the system is embedded within a security framework that is capable of authenticating users and restricting access only to trusted colleagues.

  11. An Annotated Bibliography on Early Childhood.

    ERIC Educational Resources Information Center

    Michigan Univ., Ann Arbor. Architectural Research Lab.

    This annotated bibliography of more than 150 books and articles covers a wide range of topical areas concerned with the relationship of the young child to his environment. Among the 18 topics included are: child development; health, educational, staff, and community programs; infants and toddlers, handicapped children; Project Head Start; day…

  12. An Annotated Bibliography of Small Town Research.

    ERIC Educational Resources Information Center

    Smith, Suzanne M.

    The purpose of this annotated bibliography is to list books, articles, and bulletins (written from 1900 to 1968) related to small towns in the United States. The work contributes to the project "Population Changes in Small Towns," sponsored by the Division of Social Sciences of the National Science Foundation and by the University of Wisconsin…

  13. Needs Assessment Project: FY83 Reverification Study.

    ERIC Educational Resources Information Center

    Shively, Joe E.

    As part of a continuing assessment of educational needs in a seven-state region, researchers conducted a reverification study to check the validity of educational needs first identified in fiscal year (FY) 1980. The seven states are Alabama, Kentucky, Ohio, Pennsylvania, Tennessee, Virginia, and West Virginia. The original FY80 Needs Assessment…

  14. Needs Assessment Project: FY 82 Verification Study.

    ERIC Educational Resources Information Center

    Shively, Joe E.; O'Donnell, Phyllis

    As part of a continuing assessment of educational needs in a seven-state region, researchers conducted a verification study to check the validity of educational needs first identified in fiscal year (FY) 1980. The seven states comprise Alabama, Kentucky, Ohio, Pennsylvania, Tennessee, Virginia, and West Virginia. This report describes assessment…

  15. The West Virginia Health Education Assessment Project

    ERIC Educational Resources Information Center

    Tompkins, Nancy O'Hara; Kamal, Khalid M.; Chapman, Don

    2005-01-01

    Well-designed school health education should provide students with the knowledge and skills to prevent the health risk behaviors most responsible for the major causes of morbidity and mortality. This paper reports the methodology and findings of a West Virginia statewide health education assessment initiative and describes how the findings are…

  16. Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data

    PubMed Central

    Beck, Tim; Morgan, Hugh; Blake, Andrew; Wells, Sara; Hancock, John M; Mallon, Ann-Marie

    2009-01-01

    Background Large-scale international projects are underway to generate collections of knockout mouse mutants and subsequently to perform high throughput phenotype assessments, raising new challenges for computational researchers due to the complexity and scale of the phenotype data. Phenotypes can be described using ontologies in two differing methodologies. Traditionally an individual phenotypic character has either been defined using a single compound term, originating from a species-specific dedicated phenotype ontology, or alternatively by a combinatorial annotation, using concepts from a range of disparate ontologies, to define a phenotypic character as an entity with an associated quality (EQ). Both methods have their merits, which include the dedicated approach allowing use of community standard terminology, and the combinatorial approach facilitating cross-species phenotypic statement comparisons. Previously databases have favoured one approach over another. The EUMODIC project will generate large amounts of mouse phenotype data, generated as a result of the execution of a set of Standard Operating Procedures (SOPs) and will implement both ontological approaches to capture the phenotype data generated. Results For all SOPs a four-tier annotation is made: a high-level description of the SOP, to broadly define the type of data generated by the SOP; individual parameter annotation using the EQ model; annotation of the qualitative data generated for each mouse; and the annotation of mutant lines after statistical analysis. The qualitative assessments of phenodeviance are made at the point of data entry, using child PATO qualities to the parameter quality. To facilitate data querying by scientists more familiar with single compound terms to describe phenotypes, the mappings between the Mammalian Phenotype (MP) ontology and the EQ PATO model are exploited to allow querying via MP terms. Conclusion Well-annotated and comparable phenotype databases can be achieved

  17. Assessing Fieldwork Risk for Undergraduate Projects. Directions: JGHE Study Guide.

    ERIC Educational Resources Information Center

    Higgitt, David; Bullard, Jo

    1999-01-01

    Discusses the five steps involved in conducting risk assessment for fieldwork using two examples of typical student projects: (1) identity the hazards; (2) identify who might be harmed; (3) evaluate the risks; (4) record the findings; and (5) review the assessment periodically. Addresses expeditions and work overseas. (CMK)

  18. Final Report of the Vocational Assessment Project, 1979-80.

    ERIC Educational Resources Information Center

    Rutgers, The State Univ., New Brunswick, NJ. School of Medicine.

    To improve vocational rehabilitation programs for schizophrenic persons, a project sought to design an effective assessment strategy. Inactive records of schizophrenic clients at New Jersey sheltered workshops were examined to determine validity and reliability of assessment instruments being used. General Aptitude Test Battery (GATB) profiles of…

  19. Assessment of Inquiry Skills in the SAILS Project

    ERIC Educational Resources Information Center

    Harrison, Chris

    2014-01-01

    Inquiry provides both the impetus and experience that helps students acquire problem solving and lifelong learning skills. Teachers on the Strategies for Assessment of Inquiry Learning in Science Project (SAILS) strengthened their inquiry pedagogy, through focusing on seeking assessment evidence for formative action. This paper reports on both the…

  20. Algal functional annotation tool

    SciTech Connect

    Lopez, D.; Casero, D.; Cokus, S. J.; Merchant, S. S.; Pellegrini, M.

    2012-07-01

    The Algal Functional Annotation Tool is a web-based comprehensive analysis suite integrating annotation data from several pathway, ontology, and protein family databases. The current version provides annotation for the model alga Chlamydomonas reinhardtii, and in the future will include additional genomes. The site allows users to interpret large gene lists by identifying associated functional terms, and their enrichment. Additionally, expression data for several experimental conditions were compiled and analyzed to provide an expression-based enrichment search. A tool to search for functionally-related genes based on gene expression across these conditions is also provided. Other features include dynamic visualization of genes on KEGG pathway maps and batch gene identifier conversion.

  1. Balancing Formative and Summative Science Assessment Practices: Year One of the GenScope Assessment Project.

    ERIC Educational Resources Information Center

    Hickey, Daniel T.; Kruger, Ann Cale; Fredrick, Laura D.; Schafer, Nancy Jo; Kindfield, Ann C. H.

    This paper describes the GenScope Assessment Project, a project that is exploring ways of using multimedia computers to teach complex science content, refining sociocultural views of assessment and motivation, and considering different ways of reconciling the differences between these newer views and prior behavioral and cognitive views. The…

  2. Annotation for information extraction from mammography reports.

    PubMed

    Bozkurt, Selen; Gulkesen, Kemal Hakan; Rubin, Daniel

    2013-01-01

    Inter and intra-observer variability in mammographic interpretation is a challenging problem, and decision support systems (DSS) may be helpful to reduce variation in practice. Since radiology reports are created as unstructured text reports, Natural language processing (NLP) techniques are needed to extract structured information from reports in order to provide the inputs to DSS. Before creating NLP systems, producing high quality annotated data set is essential. The goal of this project is to develop an annotation schema to guide the information extraction tasks needed from free-text mammography reports. PMID:23823416

  3. Fundamental Fluidization Research Project. Environmental Assessment

    SciTech Connect

    Not Available

    1994-01-01

    Morgantown Energy Technology Center proposes to conduct fundamental research on fluidization technology by designing, constructing, and operating a 2-foot diameter, 50-foot high, pressurized fluidized-bed unit. The anticipated result of the proposed project would be a better, understanding of fluidization phenomena under pressurized and high velocity conditions. This improved understanding would, provide a sound basis for design and scale-up of pressurized circulating fluidized-bed combustion (PCFBC) processes for fossil energy applications. Based on the analysis in the EA, DOE has determined that the proposed action is not a major, Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an Environmental Impact Statement is not required and the Department is issuing this FONSI.

  4. A Correlational Study Assessing the Relationships among Information Technology Project Complexity, Project Complication, and Project Success

    ERIC Educational Resources Information Center

    Williamson, David J.

    2011-01-01

    The specific problem addressed in this study was the low success rate of information technology (IT) projects in the U.S. Due to the abstract nature and inherent complexity of software development, IT projects are among the most complex projects encountered. Most existing schools of project management theory are based on the rational systems…

  5. "Triple-bottom-line" assessment of urban stormwater projects.

    PubMed

    Taylor, A C; Fletcher, T D

    2006-01-01

    New guidelines have been developed and trialled in Australia to assist urban stormwater managers to assess options for projects that aim to improve urban waterway health. These guidelines help users to examine the financial, ecological and social dimensions of projects (i.e., the so-called "triple-bottom-line"). Features of the assessment process described in the guidelines include use of multi criteria analysis, input from technical experts as well as non-technical stakeholders, and provision of three alternative levels of assessment to suit stormwater managers with differing needs and resources. This paper firstly provides a background to the new guidelines and triple-bottom-line assessment. The assessment methodology promoted in the new guidelines is then briefly summarised. This methodology is compared and contrasted with European guidelines from the "SWARD" project that have been primarily developed for assessing the relative sustainability of options involving urban water supply and sewerage assets. Finally, the paper discusses how assessment methodologies that evaluate the financial, ecological and social dimensions of projects can, under some circumstances, be used to evaluate the relative progress of options for urban water management on a journey towards the widely pursued, but vaguely defined goal of "sustainable development".

  6. Environmental projects. Volume 16: Waste minimization assessment

    NASA Technical Reports Server (NTRS)

    1994-01-01

    The Goldstone Deep Space Communications Complex (GDSCC), located in the MoJave Desert, is part of the National Aeronautics and Space Administration's (NASA's) Deep Space Network (DSN), the world's largest and most sensitive scientific telecommunications and radio navigation network. The Goldstone Complex is operated for NASA by the Jet Propulsion Laboratory. At present, activities at the GDSCC support the operation of nine parabolic dish antennas situated at five separate locations known as 'sites.' Each of the five sites at the GDSCC has one or more antennas, called 'Deep Space Stations' (DSS's). In the course of operation of these DSS's, various hazardous and non-hazardous wastes are generated. In 1992, JPL retained Kleinfelder, Inc., San Diego, California, to quantify the various streams of hazardous and non-hazardous wastes generated at the GDSCC. In June 1992, Kleinfelder, Inc., submitted a report to JPL entitled 'Waste Minimization Assessment.' This present volume is a JPL-expanded version of the Kleinfelder, Inc. report. The 'Waste Minimization Assessment' report did not find any deficiencies in the various waste-management programs now practiced at the GDSCC, and it found that these programs are being carried out in accordance with environmental rules and regulations.

  7. The NASA Space Radiobiology Risk Assessment Project

    NASA Astrophysics Data System (ADS)

    Cucinotta, Francis A.; Huff, Janice; Ponomarev, Artem; Patel, Zarana; Kim, Myung-Hee

    The current first phase (2006-2011) has the three major goals of: 1) optimizing the conventional cancer risk models currently used based on the double-detriment life-table and radiation quality functions; 2) the integration of biophysical models of acute radiation syndromes; and 3) the development of new systems radiation biology models of cancer processes. The first-phase also includes continued uncertainty assessment of space radiation environmental models and transport codes, and relative biological effectiveness factors (RBE) based on flight data and NSRL results, respectively. The second phase of the (2012-2016) will: 1) develop biophysical models of central nervous system risks (CNS); 2) achieve comphrensive systems biology models of cancer processes using data from proton and heavy ion studies performed at NSRL; and 3) begin to identify computational models of biological countermeasures. Goals for the third phase (2017-2021) include: 1) the development of a systems biology model of cancer risks for operational use at NASA; 2) development of models of degenerative risks, 2) quantitative models of counter-measure impacts on cancer risks; and 3) indiviudal based risk assessments. Finally, we will support a decision point to continue NSRL research in support of NASA's exploration goals beyond 2021, and create an archival of NSRL research results for continued analysis. Details on near term goals, plans for a WEB based data resource of NSRL results, and a space radiation Wikepedia are described.

  8. Environmental Education--Related Research, 1969-72. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Voelker, Alan M.; And Others

    This annotated bibliography was compiled from over 50 different sources. The specific purpose of the annotation project was to locate recent studies which might give direction to future research and help verify basic assumptions. The annotations have been divided into two sections, environmental education and environmental communications. The…

  9. Incorporating the Technology Roadmap Uncertainties into the Project Risk Assessment

    SciTech Connect

    Bonnema, Bruce Edward

    2002-02-01

    This paper describes two methods, Technology Roadmapping and Project Risk Assessment, which were used to identify and manage the technical risks relating to the treatment of sodium bearing waste at the Idaho National Engineering and Environmental Laboratory. The waste treatment technology under consideration was Direct Vitrification. The primary objective of the Technology Roadmap is to identify technical data uncertainties for the technologies involved and to prioritize the testing or development studies to fill the data gaps. Similarly, project management's objective for a multi-million dollar construction project includes managing all the key risks in accordance to DOE O 413.3 - "Program and Project Management for the Acquisition of Capital Assets." In the early stages, the Project Risk Assessment is based upon a qualitative analysis for each risk's probability and consequence. In order to clearly prioritize the work to resolve the technical issues identified in the Technology Roadmap, the issues must be cross- referenced to the project's Risk Assessment. This will enable the project to get the best value for the cost to mitigate the risks.

  10. Incorporating the Technology Roadmap Uncertainties into the Project Risk Assessment

    SciTech Connect

    Bonnema, B.E.

    2002-01-16

    This paper describes two methods, Technology Roadmapping and Project Risk Assessment, which were used to identify and manage the technical risks relating to the treatment of sodium bearing waste at the Idaho National Engineering and Environmental Laboratory. The waste treatment technology under consideration was Direct Vitrification. The primary objective of the Technology Roadmap is to identify technical data uncertainties for the technologies involved and to prioritize the testing or development studies to fill the data gaps. Similarly, project management's objective for a multi-million dollar construction project includes managing all the key risks in accordance to DOE O 413.3 - ''Program and Project Management for the Acquisition of Capital Assets.'' In the early stages, the Project Risk Assessment is based upon a qualitative analysis for each risk's probability and consequence. In order to clearly prioritize the work to resolve the technical issues identified in the Technology Roadmap, the issues must be cross- referenced to the project's Risk Assessment. This will enable the project to get the best value for the cost to mitigate the risks.

  11. Automated analysis and annotation of basketball video

    NASA Astrophysics Data System (ADS)

    Saur, Drew D.; Tan, Yap-Peng; Kulkarni, Sanjeev R.; Ramadge, Peter J.

    1997-01-01

    Automated analysis and annotation of video sequences are important for digital video libraries, content-based video browsing and data mining projects. A successful video annotation system should provide users with useful video content summary in a reasonable processing time. Given the wide variety of video genres available today, automatically extracting meaningful video content for annotation still remains hard by using current available techniques. However, a wide range video has inherent structure such that some prior knowledge about the video content can be exploited to improve our understanding of the high-level video semantic content. In this paper, we develop tools and techniques for analyzing structured video by using the low-level information available directly from MPEG compressed video. Being able to work directly in the video compressed domain can greatly reduce the processing time and enhance storage efficiency. As a testbed, we have developed a basketball annotation system which combines the low-level information extracted from MPEG stream with the prior knowledge of basketball video structure to provide high level content analysis, annotation and browsing for events such as wide- angle and close-up views, fast breaks, steals, potential shots, number of possessions and possession times. We expect our approach can also be extended to structured video in other domains.

  12. Adaptive Peircean decision aid project summary assessments.

    SciTech Connect

    Senglaub, Michael E.

    2007-01-01

    This efforts objective was to identify and hybridize a suite of technologies enabling the development of predictive decision aids for use principally in combat environments but also in any complex information terrain. The technologies required included formal concept analysis for knowledge representation and information operations, Peircean reasoning to support hypothesis generation, Mill's's canons to begin defining information operators that support the first two technologies and co-evolutionary game theory to provide the environment/domain to assess predictions from the reasoning engines. The intended application domain is the IED problem because of its inherent evolutionary nature. While a fully functioning integrated algorithm was not achieved the hybridization and demonstration of the technologies was accomplished and demonstration of utility provided for a number of ancillary queries.

  13. Annotation of Ehux ESTs

    SciTech Connect

    Kuo, Alan; Grigoriev, Igor

    2009-06-12

    22 percent ESTs do no align with scaffolds. EST Pipeleine assembles 17126 consensi from the noaligned ESTs. Annotation Pipeline predicts 8564 ORFS on the consensi. Domain analysis of ORFs reveals missing genes. Cluster analysis reveals missing genes. Expression analysis reveals potential strain specific genes.

  14. Annotation: The Savant Syndrome

    ERIC Educational Resources Information Center

    Heaton, Pamela; Wallace, Gregory L.

    2004-01-01

    Background: Whilst interest has focused on the origin and nature of the savant syndrome for over a century, it is only within the past two decades that empirical group studies have been carried out. Methods: The following annotation briefly reviews relevant research and also attempts to address outstanding issues in this research area.…

  15. Intellectuals in China: Annotations.

    ERIC Educational Resources Information Center

    Parker, Franklin

    This annotated bibliography of 72 books, journal articles, government reports, and newspaper feature stories focuses on the changing role of intellectuals in China, primarily since the 1949 Chinese Revolution. Particular attention is given to the Hundred Flowers Movement of 1957 and the Cultural Revolution. Most of the cited works are in English,…

  16. Collaborative Movie Annotation

    NASA Astrophysics Data System (ADS)

    Zad, Damon Daylamani; Agius, Harry

    In this paper, we focus on metadata for self-created movies like those found on YouTube and Google Video, the duration of which are increasing in line with falling upload restrictions. While simple tags may have been sufficient for most purposes for traditionally very short video footage that contains a relatively small amount of semantic content, this is not the case for movies of longer duration which embody more intricate semantics. Creating metadata is a time-consuming process that takes a great deal of individual effort; however, this effort can be greatly reduced by harnessing the power of Web 2.0 communities to create, update and maintain it. Consequently, we consider the annotation of movies within Web 2.0 environments, such that users create and share that metadata collaboratively and propose an architecture for collaborative movie annotation. This architecture arises from the results of an empirical experiment where metadata creation tools, YouTube and an MPEG-7 modelling tool, were used by users to create movie metadata. The next section discusses related work in the areas of collaborative retrieval and tagging. Then, we describe the experiments that were undertaken on a sample of 50 users. Next, the results are presented which provide some insight into how users interact with existing tools and systems for annotating movies. Based on these results, the paper then develops an architecture for collaborative movie annotation.

  17. Annotated Bibliography. First Edition.

    ERIC Educational Resources Information Center

    Haring, Norris G.

    An annotated bibliography which presents approximately 300 references from 1951 to 1973 on the education of severely/profoundly handicapped persons. Citations are grouped alphabetically by author's name within the following categories: characteristics and treatment, gross motor development, sensory and motor development, physical therapy for the…

  18. Ghostwriting: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Simmons, Donald B.

    Drawn from communication journals, historical and news magazines, business and industrial magazines, political science and world affairs journals, general interest periodicals, and literary and political review magazines, the approximately 90 entries in this annotated bibliography discuss ghostwriting as practiced through the ages and reveal the…

  19. A Novel Approach to Semantic and Coreference Annotation at LLNL

    SciTech Connect

    Firpo, M

    2005-02-04

    A case is made for the importance of high quality semantic and coreference annotation. The challenges of providing such annotation are described. Asperger's Syndrome is introduced, and the connections are drawn between the needs of text annotation and the abilities of persons with Asperger's Syndrome to meet those needs. Finally, a pilot program is recommended wherein semantic annotation is performed by people with Asperger's Syndrome. The primary points embodied in this paper are as follows: (1) Document annotation is essential to the Natural Language Processing (NLP) projects at Lawrence Livermore National Laboratory (LLNL); (2) LLNL does not currently have a system in place to meet its need for text annotation; (3) Text annotation is challenging for a variety of reasons, many related to its very rote nature; (4) Persons with Asperger's Syndrome are particularly skilled at rote verbal tasks, and behavioral experts agree that they would excel at text annotation; and (6) A pilot study is recommend in which two to three people with Asperger's Syndrome annotate documents and then the quality and throughput of their work is evaluated relative to that of their neuro-typical peers.

  20. Environmental monitoring and assessment program forest health monitoring quality assurance project plan for detection monitoring project

    SciTech Connect

    Cline, S.P.; Alexander, S.A.; Barnard, J.E.

    1995-05-01

    The Quality Assurance Project Plan (QAP) is written specifically for the Detection Minitoring project of the interagency Forest Health Monitoring (FHM) program. Sections 1 through 3 briefly explain key features of the Environmental Monitoring and Assessment Program (EMAP), the FHM program, and their interrelationship, respectively. Section 4 describes the general quality assurance (QA) requirements for the FHM Detection Monitoring project. Section 5 contains the separate QAPs for each forest condition indicator: site condition and tree growth and regeneration, tree crown condition, tree damage assessment, photosynthetically active radiation (PAR), vegetation structure, ozone bioindicator plants, and lichen communities.

  1. Wabash River Coal Gasification Repowering Project: A DOE Assessment

    SciTech Connect

    National Energy Technology Laboratory

    2002-01-15

    The goal of the U.S. Department of Energy (DOE) Clean Coal Technology Program (CCT) is to furnish the energy marketplace with a number of advanced, more efficient, and environmentally responsible coal utilization technologies through demonstration projects. These projects seek to establish the commercial feasibility of the most promising advanced coal technologies that have developed beyond the proof-of-concept stage. This document serves as a DOE post-project assessment (PPA) of a project selected in CCT Round IV, the Wabash River Coal Gasification Repowering (WRCGR) Project, as described in a Report to Congress (U.S. Department of Energy 1992). Repowering consists of replacing an existing coal-fired boiler with one or more clean coal technologies to achieve significantly improved environmental performance. The desire to demonstrate utility repowering with a two-stage, pressurized, oxygen-blown, entrained-flow, integrated gasification combined-cycle (IGCC) system prompted Destec Energy, Inc., and PSI Energy, Inc., to form a joint venture and submit a proposal for this project. In July 1992, the Wabash River Coal Gasification Repowering Project Joint Venture (WRCGRPJV, the Participant) entered into a cooperative agreement with DOE to conduct this project. The project was sited at PSI Energy's Wabash River Generating Station, located in West Terre Haute, Indiana. The purpose of this CCT project was to demonstrate IGCC repowering using a Destec gasifier and to assess long-term reliability, availability, and maintainability of the system at a fully commercial scale. DOE provided 50 percent of the total project funding (for capital and operating costs during the demonstration period) of $438 million.

  2. Assessing local resources and culture before instituting quality improvement projects.

    PubMed

    Hawkins, C Matthew

    2014-12-01

    The planning phases of quality improvement projects are commonly overlooked. Disorganized planning and implementation can escalate chaos, intensify resistance to change, and increase the likelihood of failure. Two important steps in the planning phase are (1) assessing local resources available to aid in the quality improvement project and (2) evaluating the culture in which the desired change is to be implemented. Assessing local resources includes identifying and engaging key stakeholders and evaluating if appropriate expertise is available for the scope of the project. This process also involves engaging informaticists and gathering available IT tools to plan and automate (to the extent possible) the data-gathering, analysis, and feedback steps. Culture in a department is influenced by the ability and willingness to manage resistance to change, build consensus, span boundaries between stakeholders, and become a learning organization. Allotting appropriate time to perform these preparatory steps will increase the odds of successfully performing a quality improvement project and implementing change. PMID:25467724

  3. Health Impact Assessment of Urban Development Project

    PubMed Central

    Shojaei, Parisa; Karimlou, Masoud; Mohammadi, Farahnaz; Malekafzali, Hosein

    2016-01-01

    Background: Health impact assessment (HIA) has emerged to identify those activities and policies likely to have major impacts on the health of a population. Method: In this research, qualitative method was applied to identifying health determinants that urban man made lake affect on them, formatting and weighing the hierarchy of the factors, calculating AHP, and Technique for Order Preference by Similarity to Ideal Solution (TOPSIS) method for decide and ranking alternatives. Results: According to the results of the study, from the structural determinants point of view, the most positive effect of man-made lake was on Recreational services by 89.5% and the most negative one was on housing. According to intermediary determinants and general average, the most positive effect of lake was on physical activity and quality of air by 88.9% and the most negative one was on noise pollution by 46.7%. Ultimately, considering the positive and negative effects of lake between constructing and not constructing the lake option, the construction option was selected. Conclusion: There is substantial potential to improve public health by bringing decision makers’ attention to the health consequences of their actions; city councilpersons, zoning commissioners, and other decision makers typically have little background in health. PMID:27157160

  4. Solar technology assessment project. Volume 6: Photovoltaic technology assessment

    NASA Astrophysics Data System (ADS)

    Backus, C. E.

    1981-04-01

    Industrial production of photovoltaic systems and volume of sales are reviewed. Low cost silicon production techniques are reviewed, including the Czochralski process, heat exchange method, edge defined film fed growth, dentritic web growth, and silicon on ceramic process. Semicrystalline silicon, amorphous silicon, and low cost poly-silicon are discussed as well as advanced materials and concentrator systems. Balance of system components beyond those needed to manufacture the solar panels are included. Nontechnical factors are assessed. The 1986 system cost goals are briefly reviewed.

  5. [Health impact assessment of building and investment projects].

    PubMed

    Thriene, B

    2003-02-01

    For regional planning and approval procedures for building projects of a certain order of magnitude and power rating according to the German Federal Act on the Prevention of Emissions with Integrated Environmental Impact Assessment (EIA), the German public health departments, acting as public authorities, increasingly perform health impact assessments (HIA). The amended Act on Environmental Impact Assessment, the Decree on industrial plants which require approval (4th Federal Decree on Emission Prevention) and the Health Service Acts of the Federal States of Germany form the legal basis for the assessment of health issues with regard to approval procedures for building and investment projects. In the framework of the "Action Programme for the Environment and Health", the present article aims at making this process binding and to ensure responsibility and general involvement of the Public Health departments in all German Federal States. Future criteria, basic principles and procedures for single-case testing as well as assessment standards should meet these requirements. The Federal Ministry for the Environment and the Federal Ministry for Health should agree on Health Impact Assessment (HIA ) as well as on the relaxant stipulations in their procedures and general administrative regulations for implementing the Environmental Impact Assessment Act (EIA). Current EIA procedures focus on urban development and road construction, industrial investment projects, intensive animal husbandry plants, waste incineration plants, and wind energy farms. This paper illustrates examples meeting with varying degrees of public acceptance. However, being involved in the regional planning procedure for the project "Extension of the federal motorway A 14 from Magdeburg to Schwerin", the Public Health Service also shares global responsibility for health and climate protection. Demands for shortest routing conflict with objectives of environmental protection which should be given long

  6. [Health impact assessment of building and investment projects].

    PubMed

    Thriene, B

    2003-02-01

    For regional planning and approval procedures for building projects of a certain order of magnitude and power rating according to the German Federal Act on the Prevention of Emissions with Integrated Environmental Impact Assessment (EIA), the German public health departments, acting as public authorities, increasingly perform health impact assessments (HIA). The amended Act on Environmental Impact Assessment, the Decree on industrial plants which require approval (4th Federal Decree on Emission Prevention) and the Health Service Acts of the Federal States of Germany form the legal basis for the assessment of health issues with regard to approval procedures for building and investment projects. In the framework of the "Action Programme for the Environment and Health", the present article aims at making this process binding and to ensure responsibility and general involvement of the Public Health departments in all German Federal States. Future criteria, basic principles and procedures for single-case testing as well as assessment standards should meet these requirements. The Federal Ministry for the Environment and the Federal Ministry for Health should agree on Health Impact Assessment (HIA ) as well as on the relaxant stipulations in their procedures and general administrative regulations for implementing the Environmental Impact Assessment Act (EIA). Current EIA procedures focus on urban development and road construction, industrial investment projects, intensive animal husbandry plants, waste incineration plants, and wind energy farms. This paper illustrates examples meeting with varying degrees of public acceptance. However, being involved in the regional planning procedure for the project "Extension of the federal motorway A 14 from Magdeburg to Schwerin", the Public Health Service also shares global responsibility for health and climate protection. Demands for shortest routing conflict with objectives of environmental protection which should be given long

  7. Hellsgate Winter Range : Wildlife Mitigation Project. Preliminary Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration.

    1995-01-01

    The Bonneville Power Administration proposes funding the Hellsgate Winter Range Wildlife Mitigation Project in cooperation with the Colville Convederated Tribes and Bureau of Indian Affairs. This Preliminary Environmental Assessment examines the potential environmental effects of acquiring and managing property for wildlife and wildlife habitat within a large project area. The Propose action is intended to meet the need for mitigation of wildlife and wild life habitat that was adversely affected by the construction of Grand Coulee and Chief Joseph Dams and their reservoirs.

  8. Project Fox: Assessing Risks Posed By Asteroids

    NASA Astrophysics Data System (ADS)

    Reinhardt, J.; Chen, X.; Liu, W.; Manchev, P.; Paté-Cornell, M.

    2013-12-01

    In order to make decisions on how to invest limited research dollars on asteroid surveillance and mitigation options, an analytic understanding of the risks posed by impacts is necessary. Qualitative and quantitative studies have been performed to assess such risks, and some reasonable point estimates have been proposed. However, since consequential asteroid impacts tend to be rare events, point estimates and expected annual death rates do not adequately convey the heavy tail of the distribution, potentially leading to misguided resource allocations. We propose and develop a framework for new risk measures, including a distribution over the number of fatalities from asteroid impacts and the probability of a globally consequential impact. We implement a simulation of asteroid impacts using probabilistic inputs for impactor characteristics, and a Poisson process for asteroid arrivals over the next 100 years. Simulation results indicate that a significant portion of the risk to humans comes from asteroids in the 300-1000 meter diameter range; this is because asteroid impacts in this range can produce global effects, and are more frequent than those from asteroids greater than 1km in diameter. The relative importance of this size regime in overall asteroid impact risk is robust in simulation results, and we find the magnitude of risks is still sensitive to factors that contribute global effects from an asteroid impact. Initial results are provided on the sensitivity of impact risks to various mitigation measures, including 'civil defense' methods. These results underscore the need for next-generation survey missions, and can help provide the basis for setting future space telescope observation requirements.

  9. Student Involvement in Assessment: A Project Designed to Assess Class Participation Fairly and Reliably

    ERIC Educational Resources Information Center

    Dancer, Diane; Kamvounias, Patty

    2005-01-01

    This article describes a project designed to ensure that class participation in a large introductory commercial law course is assessed fairly and reliably. The subjectivity often associated with this type of assessment is minimized by involving students in the specification of clear criteria and the assessment process as they were asked to assess…

  10. Analysis and Annotation of Nucleic Acid Sequence

    SciTech Connect

    States, David J.

    2004-07-28

    The aims of this project were to develop improved methods for computational genome annotation and to apply these methods to improve the annotation of genomic sequence data with a specific focus on human genome sequencing. The project resulted in a substantial body of published work. Notable contributions of this project were the identification of basecalling and lane tracking as error processes in genome sequencing and contributions to improved methods for these steps in genome sequencing. This technology improved the accuracy and throughput of genome sequence analysis. Probabilistic methods for physical map construction were developed. Improved methods for sequence alignment, alternative splicing analysis, promoter identification and NF kappa B response gene prediction were also developed.

  11. Digital imaging technology assessment: Digital document storage project

    NASA Technical Reports Server (NTRS)

    1989-01-01

    An ongoing technical assessment and requirements definition project is examining the potential role of digital imaging technology at NASA's STI facility. The focus is on the basic components of imaging technology in today's marketplace as well as the components anticipated in the near future. Presented is a requirement specification for a prototype project, an initial examination of current image processing at the STI facility, and an initial summary of image processing projects at other sites. Operational imaging systems incorporate scanners, optical storage, high resolution monitors, processing nodes, magnetic storage, jukeboxes, specialized boards, optical character recognition gear, pixel addressable printers, communications, and complex software processes.

  12. SNPnexus: a web server for functional annotation of novel and publicly known genetic variants (2012 update).

    PubMed

    Dayem Ullah, Abu Z; Lemoine, Nicholas R; Chelala, Claude

    2012-07-01

    Broader functional annotation of single nucleotide variations is a valuable mean for prioritizing targets in further disease studies and large-scale genotyping projects. We originally developed SNPnexus to assess the potential significance of known and novel SNPs on the major transcriptome, proteome, regulatory and structural variation models in order to identify the phenotypically important variants. Being committed to providing continuous support to the scientific community, we have substantially improved SNPnexus over time by incorporating a broader range of variations such as insertions/deletions, block substitutions, IUPAC codes submission and region-based analysis, expanding the query size limit, and most importantly including additional categories for the assessment of functional impact. SNPnexus provides a comprehensive set of annotations for genomic variation data by characterizing related functional consequences at the transcriptome/proteome levels of seven major annotation systems with in-depth analysis of potential deleterious effects, inferring physical and cytogenetic mapping, reporting information on HapMap genotype/allele data, finding overlaps with potential regulatory elements, structural variations and conserved elements, and retrieving links with previously reported genetic disease studies. SNPnexus has a user-friendly web interface with an improved query structure, enhanced functional annotation categories and flexible output presentation making it practically useful for biologists. SNPnexus is freely available at http://www.snp-nexus.org.

  13. The Groundwater Performance Assessment Project Quality Assurance Plan

    SciTech Connect

    Luttrell, Stuart P.

    2006-05-11

    U.S. Department of Energy (DOE) has monitored groundwater on the Hanford Site since the 1940s to help determine what chemical and radiological contaminants have made their way into the groundwater. As regulatory requirements for monitoring increased in the 1980s, there began to be some overlap between various programs. DOE established the Groundwater Performance Assessment Project (groundwater project) in 1996 to ensure protection of the public and the environment while improving the efficiency of monitoring activities. The groundwater project is designed to support all groundwater monitoring needs at the site, eliminate redundant sampling and analysis, and establish a cost-effective hierarchy for groundwater monitoring activities. This document provides the quality assurance guidelines that will be followed by the groundwater project. This QA Plan is based on the QA requirements of DOE Order 414.1C, Quality Assurance, and 10 CFR 830, Subpart A--General Provisions/Quality Assurance Requirements as delineated in Pacific Northwest National Laboratory’s Standards-Based Management System. In addition, the groundwater project is subject to the Environmental Protection Agency (EPA) Requirements for Quality Assurance Project Plans (EPA/240/B-01/003, QA/R-5). The groundwater project has determined that the Hanford Analytical Services Quality Assurance Requirements Documents (HASQARD, DOE/RL-96-68) apply to portions of this project and to the subcontractors. HASQARD requirements are discussed within applicable sections of this plan.

  14. Solar Tutorial and Annotation Resource (STAR)

    NASA Astrophysics Data System (ADS)

    Showalter, C.; Rex, R.; Hurlburt, N. E.; Zita, E. J.

    2009-12-01

    We have written a software suite designed to facilitate solar data analysis by scientists, students, and the public, anticipating enormous datasets from future instruments. Our “STAR" suite includes an interactive learning section explaining 15 classes of solar events. Users learn software tools that exploit humans’ superior ability (over computers) to identify many events. Annotation tools include time slice generation to quantify loop oscillations, the interpolation of event shapes using natural cubic splines (for loops, sigmoids, and filaments) and closed cubic splines (for coronal holes). Learning these tools in an environment where examples are provided prepares new users to comfortably utilize annotation software with new data. Upon completion of our tutorial, users are presented with media of various solar events and asked to identify and annotate the images, to test their mastery of the system. Goals of the project include public input into the data analysis of very large datasets from future solar satellites, and increased public interest and knowledge about the Sun. In 2010, the Solar Dynamics Observatory (SDO) will be launched into orbit. SDO’s advancements in solar telescope technology will generate a terabyte per day of high-quality data, requiring innovation in data management. While major projects develop automated feature recognition software, so that computers can complete much of the initial event tagging and analysis, still, that software cannot annotate features such as sigmoids, coronal magnetic loops, coronal dimming, etc., due to large amounts of data concentrated in relatively small areas. Previously, solar physicists manually annotated these features, but with the imminent influx of data it is unrealistic to expect specialized researchers to examine every image that computers cannot fully process. A new approach is needed to efficiently process these data. Providing analysis tools and data access to students and the public have proven

  15. Rapid Response Risk Assessment in New Project Development

    NASA Technical Reports Server (NTRS)

    Graber, Robert R.

    2010-01-01

    A capability for rapidly performing quantitative risk assessments has been developed by JSC Safety and Mission Assurance for use on project design trade studies early in the project life cycle, i.e., concept development through preliminary design phases. A risk assessment tool set has been developed consisting of interactive and integrated software modules that allow a user/project designer to assess the impact of alternative design or programmatic options on the probability of mission success or other risk metrics. The risk and design trade space includes interactive options for selecting parameters and/or metrics for numerous design characteristics including component reliability characteristics, functional redundancy levels, item or system technology readiness levels, and mission event characteristics. This capability is intended for use on any project or system development with a defined mission, and an example project will used for demonstration and descriptive purposes, e.g., landing a robot on the moon. The effects of various alternative design considerations and their impact of these decisions on mission success (or failure) can be measured in real time on a personal computer. This capability provides a high degree of efficiency for quickly providing information in NASA s evolving risk-based decision environment

  16. The Vertebrate Genome Annotation browser 10 years on

    PubMed Central

    Harrow, Jennifer L.; Steward, Charles A.; Frankish, Adam; Gilbert, James G.; Gonzalez, Jose M.; Loveland, Jane E.; Mudge, Jonathan; Sheppard, Dan; Thomas, Mark; Trevanion, Stephen; Wilming, Laurens G.

    2014-01-01

    The Vertebrate Genome Annotation (VEGA) database (http://vega.sanger.ac.uk), initially designed as a community resource for browsing manual annotation of the human genome project, now contains five reference genomes (human, mouse, zebrafish, pig and rat). Its introduction pages have been redesigned to enable the user to easily navigate between whole genomes and smaller multi-species haplotypic regions of interest such as the major histocompatibility complex. The VEGA browser is unique in that annotation is updated via the Human And Vertebrate Analysis aNd Annotation (HAVANA) update track every 2 weeks, allowing single gene updates to be made publicly available to the research community quickly. The user can now access different haplotypic subregions more easily, such as those from the non-obese diabetic mouse, and display them in a more intuitive way using the comparative tools. We also highlight how the user can browse manually annotated updated patches from the Genome Reference Consortium (GRC). PMID:24316575

  17. Integrated economic and climate projections for impact assessment

    EPA Science Inventory

    We designed scenarios for impact assessment that explicitly address policy choices and uncertainty in climate response. Economic projections and the resulting greenhouse gas emissions for the “no climate policy” scenario and two stabilization scenarios: at 4.5 W/m2 and 3.7 W/m2 b...

  18. Environmental Restoration Disposal Facility (Project W-296) Safety Assessment

    SciTech Connect

    Armstrong, D.L.

    1994-08-01

    This Safety Assessment is based on information derived from the Conceptual Design Report for the Environmental Restoration Disposal Facility (DOE/RL 1994) and ancillary documentation developed during the conceptual design phase of Project W-296. The Safety Assessment has been prepared to support the Solid Waste Burial Ground Interim Safety Basis document. The purpose of the Safety Assessment is to provide an evaluation of the design to determine if the process, as proposed, will comply with US Department of Energy (DOE) Limits for radioactive and hazardous material exposures and be acceptable from an overall health and safety standpoint. The evaluation considered affects on the worker, onsite personnel, the public, and the environment.

  19. Environmental assessment, expanded Ponnequin wind energy project, Weld County, Colorado

    SciTech Connect

    1999-02-01

    The US Department of Energy (DOE) has considered a proposal from the State of Colorado, Office of Energy Conservation (OEC), for funding construction of the Expanded Ponnequin Wind Project in Weld County, Colorado. OEC plans to enter into a contracting arrangement with Public Service Company of Colorado (PSCo) for the completion of these activities. PSCo, along with its subcontractors and business partners, are jointly developing the Expanded Ponnequin Wind Project. The purpose of this Final Environmental Assessment (EA) is to provide DOE and the public with information on potential environmental impacts associated with the Expanded Ponnequin Wind Energy Project. This EA, and public comments received on it, were used in DOE`s deliberations on whether to release funding for the expanded project under the Commercialization Ventures Program.

  20. Malingering dissociative identity disorder: objective and projective assessment.

    PubMed

    Labott, Susan M; Wallach, Heather R

    2002-04-01

    Verification of dissociative identity disorder presents challenges given the complex nature of the illness. This study addressed the concern that this disorder can be successfully malingered on objective and projective psychological tests. 50 undergraduate women were assigned to a Malingering or a Control condition, then completed the Rorschach Inkblot Test and the Dissociative Experiences Scale II. The Malingering group were asked to simulate dissociative identity disorder; controls received instructions to answer all materials honestly. Analysis indicated that malingerers were significantly more likely to endorse dissociative experiences on the Dissociative Experiences Scale II in the range common to patients with diagnosed dissociative identity disorder. However, on the Rorschach there were no significant differences between the two groups. Results suggest that the assessment of dissociative identity disorder requires a multifaceted approach with both objective and projective assessment tools. Research is needed to assess these issues in clinical populations.

  1. Wabash River Coal Gasification Repowering Project: A DOE Assessment

    SciTech Connect

    National Energy Technology Laboratory

    2002-01-15

    The goal of the U.S. Department of Energy (DOE) Clean Coal Technology Program (CCT) is to furnish the energy marketplace with a number of advanced, more efficient, and environmentally responsible coal utilization technologies through demonstration projects. These projects seek to establish the commercial feasibility of the most promising advanced coal technologies that have developed beyond the proof-of-concept stage. This document serves as a DOE post-project assessment (PPA) of a project selected in CCT Round IV, the Wabash River Coal Gasification Repowering (WRCGR) Project, as described in a Report to Congress (U.S. Department of Energy 1992). Repowering consists of replacing an existing coal-fired boiler with one or more clean coal technologies to achieve significantly improved environmental performance. The desire to demonstrate utility repowering with a two-stage, pressurized, oxygen-blown, entrained-flow, integrated gasification combined-cycle (IGCC) system prompted Destec Energy, Inc., and PSI Energy, Inc., to form a joint venture and submit a proposal for this project. In July 1992, the Wabash River Coal Gasification Repowering Project Joint Venture (WRCGRPJV, the Participant) entered into a cooperative agreement with DOE to conduct this project. The project was sited at PSI Energy's Wabash River Generating Station, located in West Terre Haute, Indiana. The purpose of this CCT project was to demonstrate IGCC repowering using a Destec gasifier and to assess long-term reliability, availability, and maintainability of the system at a fully commercial scale. DOE provided 50 percent of the total project funding (for capital and operating costs during the demonstration period) of $438 million. Construction for the demonstration project was started in July 1993. Pre-operational tests were initiated in August 1995, and construction was completed in November 1995. Commercial operation began in November 1995, and the demonstration period was completed in December

  2. Quantification for complex assessment: uncertainty estimation in final year project thesis assessment

    NASA Astrophysics Data System (ADS)

    Kim, Ho Sung

    2013-12-01

    A quantitative method for estimating an expected uncertainty (reliability and validity) in assessment results arising from the relativity between four variables, viz examiner's expertise, examinee's expertise achieved, assessment task difficulty and examinee's performance, was developed for the complex assessment applicable to final year project thesis assessment including peer assessment. A guide map can be generated by the method for finding expected uncertainties prior to the assessment implementation with a given set of variables. It employs a scale for visualisation of expertise levels, derivation of which is based on quantified clarities of mental images for levels of the examiner's expertise and the examinee's expertise achieved. To identify the relevant expertise areas that depend on the complexity in assessment format, a graphical continuum model was developed. The continuum model consists of assessment task, assessment standards and criterion for the transition towards the complex assessment owing to the relativity between implicitness and explicitness and is capable of identifying areas of expertise required for scale development.

  3. The GATO gene annotation tool for research laboratories.

    PubMed

    Fujita, A; Massirer, K B; Durham, A M; Ferreira, C E; Sogayar, M C

    2005-11-01

    Large-scale genome projects have generated a rapidly increasing number of DNA sequences. Therefore, development of computational methods to rapidly analyze these sequences is essential for progress in genomic research. Here we present an automatic annotation system for preliminary analysis of DNA sequences. The gene annotation tool (GATO) is a Bioinformatics pipeline designed to facilitate routine functional annotation and easy access to annotated genes. It was designed in view of the frequent need of genomic researchers to access data pertaining to a common set of genes. In the GATO system, annotation is generated by querying some of the Web-accessible resources and the information is stored in a local database, which keeps a record of all previous annotation results. GATO may be accessed from everywhere through the internet or may be run locally if a large number of sequences are going to be annotated. It is implemented in PHP and Perl and may be run on any suitable Web server. Usually, installation and application of annotation systems require experience and are time consuming, but GATO is simple and practical, allowing anyone with basic skills in informatics to access it without any special training. GATO can be downloaded at [http://mariwork.iq.usp.br/gato/]. Minimum computer free space required is 2 MB. PMID:16258624

  4. Annotated Bibliography of Research in the Teaching of English.

    ERIC Educational Resources Information Center

    Brown, Deborah; Kalman, Judith; Gomez, Macrina; Rijlaarsdam, Gert; Stinson, Anne D'Antonio; Whiting, Melissa E.

    2001-01-01

    Presents 36 annotations of journal articles (published between January and June, 2001) dealing with assessment, bilingual/foreign language education, literacy, professional development, reading, teaching and learning of literature, teaching and learning of writing, and technology and literacy. (SG)

  5. Statistical mechanics of ontology based annotations

    NASA Astrophysics Data System (ADS)

    Hoyle, David C.; Brass, Andrew

    2016-01-01

    We present a statistical mechanical theory of the process of annotating an object with terms selected from an ontology. The term selection process is formulated as an ideal lattice gas model, but in a highly structured inhomogeneous field. The model enables us to explain patterns recently observed in real-world annotation data sets, in terms of the underlying graph structure of the ontology. By relating the external field strengths to the information content of each node in the ontology graph, the statistical mechanical model also allows us to propose a number of practical metrics for assessing the quality of both the ontology, and the annotations that arise from its use. Using the statistical mechanical formalism we also study an ensemble of ontologies of differing size and complexity; an analysis not readily performed using real data alone. Focusing on regular tree ontology graphs we uncover a rich set of scaling laws describing the growth in the optimal ontology size as the number of objects being annotated increases. In doing so we provide a further possible measure for assessment of ontologies.

  6. Guidance on internal dose assessments from monitoring data (project IDEAS).

    PubMed

    Doerfel, H; Andrasi, A; Bailey, M; Berkovski, V; Castellani, C M; Hurtgen, C; Jourdain, J R; LeGuen, B

    2003-01-01

    Several international inter-comparison exercises on intake and internal dose assessments from monitoring data led to the conclusion that the results calculated by different participants varied significantly, mainly due to the broad variety of methods and assumptions applied in the assessment procedure. Based on these experiences, the need of harmonisation of the procedures has been formulated as an EU research project under the 5th Framework Programme, with the aim of developing general guidelines for standardising assessments of intakes and internal doses. In the IDEAS project, eight institutions from seven European countries are participating, also using inputs from internal dosimetry professionals from across Europe to ensure broad consensus in the outcome of the project. To ensure that the guidelines are applicable to a wide range of practical situations, the first step will be to compile a database on well documented cases of internal contamination. In parallel, an improved version of existing software will be developed and distributed to the partners for further use. Many cases from the database will be evaluated independently by more partners using the same software and the results will be discussed and the draft guidelines prepared. The guidelines will then be revised and refined on the basis of the experiences and discussions of two workshops, and an intercomparison exercise organised in the frame of the project which will be open to all internal dosimetry professionals.

  7. Environmental Assessment Expanded Ponnequin Wind Energy Project Weld County, Colorado

    SciTech Connect

    N /A

    1999-03-02

    The U.S.Department of Energy (DOE) has considered a proposal from the State of Colorado, Office of Energy Conservation (OEC), for funding construction of the Expanded Ponnequin Wind Project in Weld County, Colorado. OEC plans to enter into a contracting arrangement with Public Service Company of Colorado (PSCO) for the completion of these activities. PSCo, along with its subcontractors and business partners, are jointly developing the Expanded Ponnequin Wind Project. DOE completed an environmental assessment of the original proposed project in August 1997. Since then, the geographic scope and the design of the project changed, necessitating additional review of the project under the National Environmental Policy Act. The project now calls for the possible construction of up to 48 wind turbines on State and private lands. PSCo and its partners have initiated construction of the project on private land in Weld County, Colorado. A substation, access road and some wind turbines have been installed. However, to date, DOE has not provided any funding for these activities. DOE, through its Commercialization Ventures Program, has solicited applications for financial assistance from state energy offices, in a teaming arrangement with private-sector organizations, for projects that will accelerate the commercialization of emerging renewable energy technologies. The Commercialization Ventures Program was established by the Renewable Energy and Energy Efficiency Technology Competitiveness Act of 1989 (P.L. 101-218) as amended by the Energy Policy Act of 1992 (P.L. 102-486). The Program seeks to assist entry into the marketplace of newly emerging renewable energy technologies, or of innovative applications of existing technologies. In short, an emerging renewable energy technology is one which has already proven viable but which has had little or no operational experience. The Program is managed by the Department of Energy, Office of Energy Efficiency and Renewable Energy. The

  8. A Conceptual Framework for Post-Project Assessment Applied to the Provo River Restoration Project, Utah

    NASA Astrophysics Data System (ADS)

    Goetz, R. R.; Schmidt, J. C.; Erwin, S.; Gooseff, M. N.

    2007-12-01

    Comprehensive assessment of stream restoration projects necessitates evaluation of: 1) the actual pre-project condition in relation to the public perception of impairment, 2) the project concept, goals, and objectives, 3) the project design, 4) the project as actually built, and 5) the project performance. We applied this framework in assessing the recently completed Provo River Restoration Project (PRRP). Begun in 1999 and completed in 2007, the PRRP's budget was 10 million for construction of approximately 16 km of channel and adjacent floodplain wetlands. We analyzed project planning documents, design documents, and made field measurements of the Provo River channel before and after channel re-alignment. Although the impaired, pre-project channel was never explicitly measured by restoration designers, our measurements demonstrate that the bed material organization and floodplain inundation frequency was perturbed from those attributes typical of channels in similar physiographic settings. Project designers did not develop quantitative project goals, and there were no metrics by which performance success was to be measured. Design documents demonstrate that the realigned channel has the potential to re-establish channel and floodplain connection. Surprisingly, there were significant differences between design and as-built channel geometry. These discrepancies have the potential to adversely impact project performance in re-establishing the ecosystem benefits provided by a naturalized channel/floodplain connection. However, field construction of a channel whose capacity is larger than designed has been compensated by a hydrologic regime whose common floods have been larger than anticipated. In addition, the original channel design did not explicitly consider sediment supply, which has the potential to rearrange reconstructed channel elements in the downstream part of the project. Collectively, this analysis demonstrates the degree of uncertainty and ambiguity

  9. Mod-2 wind turbine project assessment and cluster test plans

    NASA Technical Reports Server (NTRS)

    Gordon, L. H.

    1982-01-01

    An assessment of the Mod-2 Wind Turbine project is presented based on initial goals and present results. Specifically, the Mod-2 background, project flow, and a chronology of events/results leading to Mod-2 acceptance is presented. After checkout/acceptance of the three operating turbines, NASA/LeRC will continue management of a two year test program performed at the DOE Goodnoe Hills test site. This test program is expected to yield data necessary for the continued development and optimization of wind energy systems. These test activities, the implementation of, and the results to date are also presented.

  10. Effective function annotation through catalytic residue conservation.

    PubMed

    George, Richard A; Spriggs, Ruth V; Bartlett, Gail J; Gutteridge, Alex; MacArthur, Malcolm W; Porter, Craig T; Al-Lazikani, Bissan; Thornton, Janet M; Swindells, Mark B

    2005-08-30

    Because of the extreme impact of genome sequencing projects, protein sequences without accompanying experimental data now dominate public databases. Homology searches, by providing an opportunity to transfer functional information between related proteins, have become the de facto way to address this. Although a single, well annotated, close relationship will often facilitate sufficient annotation, this situation is not always the case, particularly if mutations are present in important functional residues. When only distant relationships are available, the transfer of function information is more tenuous, and the likelihood of encountering several well annotated proteins with different functions is increased. The consequence for a researcher is a range of candidate functions with little way of knowing which, if any, are correct. Here, we address the problem directly by introducing a computational approach to accurately identify and segregate related proteins into those with a functional similarity and those where function differs. This approach should find a wide range of applications, including the interpretation of genomics/proteomics data and the prioritization of targets for high-throughput structure determination. The method is generic, but here we concentrate on enzymes and apply high-quality catalytic site data. In addition to providing a series of comprehensive benchmarks to show the overall performance of our approach, we illustrate its utility with specific examples that include the correct identification of haptoglobin as a nonenzymatic relative of trypsin, discrimination of acid-d-amino acid ligases from a much larger ligase pool, and the successful annotation of BioH, a structural genomics target.

  11. Impact of the agricultural research service watershed assessment studies on the conservation effects assessment project cropland national assessment

    Technology Transfer Automated Retrieval System (TEKTRAN)

    USDA initiated the Conservation Effects Assessment Project (CEAP) in 2002 to analyze societal and environmental benefits gained from the increased conservation program funding provided in the 2002 Farm Bill. The Natural Resources Conservation Service (NRCS), Agricultural Research Service (ARS), and...

  12. Quantification of false positives within Moon Zoo crater annotations

    NASA Astrophysics Data System (ADS)

    Tar, P.; Thacker, N.

    2014-04-01

    The Moon Zoo citizen science project [1] allows members of the public to annotate lunar images, providing researchers with a wealth of location and size information regarding the population of small craters on the Moon. To date, approximately 4 million images have been inspected. Here, we show how a quantitative pattern recognition system can be used to estimate the quantity of contamination in Moon Zoo data from erroneous annotations. The proposed method produces not only estimates of true verses false crater annotations, but also a full error covariance, with additional conformity checks, which is essential for the meaningful interpretation of measurements, e.g. for plotting error bars.

  13. Coalescence and refinement of Moon Zoo crater annotations

    NASA Astrophysics Data System (ADS)

    Tar, P.; Thacker, N.

    2014-04-01

    The Moon Zoo citizen science project [1] allows members of the public to annotate lunar images, providing researchers with a wealth of location and size information regarding the population of small craters on the Moon. To date, approximately 4 million images have been inspected. Here, we show how data from multiple users can be combined to give a consensus as to the parameters of annotated craters. The process uses annotations and image data to provide Likelihood solutions, revealing the most probable crater parameters, from which crater Size-Frequency Distributions (SFDs) might be produced.

  14. An uncertainty assessment of discharge projections for eight Swiss catchments

    NASA Astrophysics Data System (ADS)

    Addor, Nans; Rössler, Ole; Köplin, Nina; Bernhard, Luzi; Bosshard, Thomas; Weingartner, Rolf; Seibert, Jan

    2013-04-01

    Projections of discharge under future climate are impaired by uncertainties arising from different sources: the emission scenarios, the climate models, the post-processing of the climate projections, the hydrological models structure and parameterisation. In this project we investigated the contribution of each of these sources to the final simulation uncertainty for discharge using analyses of variance (ANOVA) in eight catchments representative of the typical Swiss discharge regimes. The catchments are distributed among the Jura, the Swiss Plateau and the Alps, and are known to react differently to climate change. We used climate projections of the CH2011 dataset obtained from the Center for Climate Systems Modeling (C2SM). This dataset consists of two types of projections, both based on the climate model runs of the ENSEMBLES project: one relies on the delta change technique applied to 10 runs and the other is based on a Bayesian multi-model approach combining 20 runs until 2050, and then 14 runs until 2099. In addition to the climate projections for emission scenario A1B chosen for the ENSEMBLES project, the CH2011 team generated simulations for the scenarios A2 and RCP3PD using pattern scaling. This enabled us to address the influence of the uncertainty in green house gases emissions on discharge projections. We ran hydrological simulations using three conceptual models: HBV, PREVAH and WaSiM. HBV and PREVAH rely on a similar reservoir structure, while WaSiM uses the process-oriented Richards-equation approach. PREVAH and WaSiM use a higher level of spatial discretization than the lumped HBV model. The use of the three different models allowed evaluation of the sensitivity of discharge projections to the hydrological model complexity and structure. Simulations were run for the periods 2020-2049, 2045-2074 and 2070-2099 to assess the variation of the different sources of uncertainty over time. The pattern scaling enabled the assessment of uncertainty arising

  15. Parallel optics technology assessment for the versatile link project

    SciTech Connect

    Chramowicz, J.; Kwan, S.; Rivera, R.; Prosser, A.; /Fermilab

    2011-01-01

    This poster describes the assessment of commercially available and prototype parallel optics modules for possible use as back end components for the Versatile Link common project. The assessment covers SNAP12 transmitter and receiver modules as well as optical engine technologies in dense packaging options. Tests were performed using vendor evaluation boards (SNAP12) as well as custom evaluation boards (optical engines). The measurements obtained were used to compare the performance of these components with single channel SFP+ components operating at a transmission wavelength of 850 nm over multimode fibers.

  16. Environmental Management Assessment of the Fernald Environmental Management Project (FEMP)

    SciTech Connect

    Not Available

    1993-04-01

    This report documents the results of the Environmental Management Assessment performed at the Fernald Environmental Management Project (FEMP) in Fernald, Ohio. During this assessment, the activities conducted by the assessment team included review of internal documents and reports from previous audits and assessments; interviews with US Department of Energy (DOE) and FEMP contractor personnel; and inspection and observation of selected facilities and operations. The onsite portion of the assessment was conducted from March 15 through April 1, 1993, by DOE`s Office of Environmental Audit (EH-24) located within the Office of the Assistant Secretary for Environment, Safety, and Health (EH-1). EH-24 carries out independent assessments of DOE facilities and activities as part of the EH-1 Environment, Safety, and Health (ES&H) Oversight Audit Program. The EH-24 program is designed to evaluate the status of DOE facilities and activities with respect to compliance with Federal, state, and local environmental laws and regulations; compliance with DOE Orders, Guidance and Directives; conformance with accepted industry practices and standards of performance; and the status and adequacy of management systems developed to address environmental requirements. The Environmental Management Assessment of FEMP focused on the adequacy of environmental management systems. Further, in response to requests by the Office of Environmental Restoration and Waste Management (EM) and Fernald Field Office (FN), Quality Assurance and Environmental Radiation activities at FEMP were evaluated from a programmatic standpoint. The results of the evaluation of these areas are contained in the Environmental Protection Programs section in this report.

  17. Environmentally Conscious Manufacturing Project: ECM assessment guidance manual

    SciTech Connect

    Not Available

    1994-11-01

    The purpose of this document is to provide a summary of the basic tools that will be used in conducting assessments under the Environmentally Conscious Manufacturing (ECM) Project assessment program. ECM can cover a wide range of issues including: finding safer alternatives to toxic materials; changing processes to become more efficient; environmental costs and regulatory compliance; waste reduction; energy conservation; product packaging; and product reuse/recycling. The assessments performed as part of this program will try to identify opportunities to implement technologies/actions that will promote the types of results listed above. The general methodology, or sequence of events, that will be used in conducting assessments is as follows: 1. Form an Assessment Team; 2. Map Process by flow diagrams and materials accounting; 3. Identify opportunities for ECM by activity based accounting and pareto analysis; 4. Identify and evaluate ECM/pollution prevention alternatives; 5. Implement alternatives; 6. Monitor progress. All of the assessment steps listed above are addressed in this document except forming the assessment team. The tools discussed in this document are well known, widely used process analysis or quality improvement tools which have been adapted for use in evaluating opportunities for ECM/Pollution prevention.

  18. Integrative neural networks models for stream assessment in restoration projects

    NASA Astrophysics Data System (ADS)

    Gazendam, Ed; Gharabaghi, Bahram; Ackerman, Josef D.; Whiteley, Hugh

    2016-05-01

    Stream-habitat assessment for evaluation of restoration projects requires the examination of many parameters, both watershed-scale and reach-scale, to incorporate the complex non-linear effects of geomorphic, riparian, watershed and hydrologic factors on aquatic ecosystems. Rapid geomorphic assessment tools used by many jurisdictions to assess natural channel design projects seldom include watershed-level parameters, which have been shown to have a significant effect on benthic habitat in stream systems. In this study, Artificial Neural Network (ANN) models were developed to integrate complex non-linear relationships between the aquatic ecosystem health indices and key watershed-scale and reach-scale parameters. Physical stream parameters, based on QHEI parameters, and watershed characteristics data were collected at 112 sites on 62 stream systems located in Southern Ontario. Benthic data were collected separately and benthic invertebrate summary indices, specifically Hilsenhoff's Biotic Index (HBI) and Richness, were determined. The ANN models were trained on the randomly selected 3/4 of the dataset of 112 streams in Ontario, Canada and validated on the remaining 1/4. The R2 values for the developed ANN model predictions were 0.86 for HBI and 0.92 for Richness. Sensitivity analysis of the trained ANN models revealed that Richness was directly proportional to Erosion and Riparian Width and inversely proportional to Floodplain Quality and Substrate parameters. HBI was directly proportional to Velocity Types and Erosion and inversely proportional to Substrate, % Treed and 1:2 Year Flood Flow parameters. The ANN models can be useful tools for watershed managers in stream assessment and restoration projects by allowing consideration of watershed properties in the stream assessment.

  19. Social cost impact assessment of pipeline infrastructure projects

    SciTech Connect

    Matthews, John C.; Allouche, Erez N.; Sterling, Raymond L.

    2015-01-15

    A key advantage of trenchless construction methods compared with traditional open-cut methods is their ability to install or rehabilitate underground utility systems with limited disruption to the surrounding built and natural environments. The equivalent monetary values of these disruptions are commonly called social costs. Social costs are often ignored by engineers or project managers during project planning and design phases, partially because they cannot be calculated using standard estimating methods. In recent years some approaches for estimating social costs were presented. Nevertheless, the cost data needed for validation of these estimating methods is lacking. Development of such social cost databases can be accomplished by compiling relevant information reported in various case histories. This paper identifies eight most important social cost categories, presents mathematical methods for calculating them, and summarizes the social cost impacts for two pipeline construction projects. The case histories are analyzed in order to identify trends for the various social cost categories. The effectiveness of the methods used to estimate these values is also discussed. These findings are valuable for pipeline infrastructure engineers making renewal technology selection decisions by providing a more accurate process for the assessment of social costs and impacts. - Highlights: • Identified the eight most important social cost factors for pipeline construction • Presented mathematical methods for calculating those social cost factors • Summarized social cost impacts for two pipeline construction projects • Analyzed those projects to identify trends for the social cost factors.

  20. MEETING: Chlamydomonas Annotation Jamboree - October 2003

    SciTech Connect

    Grossman, Arthur R

    2007-04-13

    Shotgun sequencing of the nuclear genome of Chlamydomonas reinhardtii (Chlamydomonas throughout) was performed at an approximate 10X coverage by JGI. Roughly half of the genome is now contained on 26 scaffolds, all of which are at least 1.6 Mb, and the coverage of the genome is ~95%. There are now over 200,000 cDNA sequence reads that we have generated as part of the Chlamydomonas genome project (Grossman, 2003; Shrager et al., 2003; Grossman et al. 2007; Merchant et al., 2007); other sequences have also been generated by the Kasuza sequence group (Asamizu et al., 1999; Asamizu et al., 2000) or individual laboratories that have focused on specific genes. Shrager et al. (2003) placed the reads into distinct contigs (an assemblage of reads with overlapping nucleotide sequences), and contigs that group together as part of the same genes have been designated ACEs (assembly of contigs generated from EST information). All of the reads have also been mapped to the Chlamydomonas nuclear genome and the cDNAs and their corresponding genomic sequences have been reassembled, and the resulting assemblage is called an ACEG (an Assembly of contiguous EST sequences supported by genomic sequence) (Jain et al., 2007). Most of the unique genes or ACEGs are also represented by gene models that have been generated by the Joint Genome Institute (JGI, Walnut Creek, CA). These gene models have been placed onto the DNA scaffolds and are presented as a track on the Chlamydomonas genome browser associated with the genome portal (http://genome.jgi-psf.org/Chlre3/Chlre3.home.html). Ultimately, the meeting grant awarded by DOE has helped enormously in the development of an annotation pipeline (a set of guidelines used in the annotation of genes) and resulted in high quality annotation of over 4,000 genes; the annotators were from both Europe and the USA. Some of the people who led the annotation initiative were Arthur Grossman, Olivier Vallon, and Sabeeha Merchant (with many individual

  1. Considerations to improve functional annotations in biological databases.

    PubMed

    Benítez-Páez, Alfonso

    2009-12-01

    Despite the great effort to design efficient systems allowing the electronic indexation of information concerning genes, proteins, structures, and interactions published daily in scientific journals, some problems are still observed in specific tasks such as functional annotation. The annotation of function is a critical issue for bioinformatic routines, such as for instance, in functional genomics and the further prediction of unknown protein function, which are highly dependent of the quality of existing annotations. Some information management systems evolve to efficiently incorporate information from large-scale projects, but often, annotation of single records from the literature is difficult and slow. In this short report, functional characterizations of a representative sample of the entire set of uncharacterized proteins from Escherichia coli K12 was compiled from Swiss-Prot, PubMed, and EcoCyc and demonstrate a functional annotation deficit in biological databases. Some issues are postulated as causes of the lack of annotation, and different solutions are evaluated and proposed to avoid them. The hope is that as a consequence of these observations, there will be new impetus to improve the speed and quality of functional annotation and ultimately provide updated, reliable information to the scientific community. PMID:20050264

  2. Gene ontology annotation by density and gravitation models.

    PubMed

    Hou, Wen-Juan; Lin, Kevin Hsin-Yih; Chen, Hsin-Hsi

    2006-01-01

    Gene Ontology (GO) is developed to provide standard vocabularies of gene products in different databases. The process of annotating GO terms to genes requires curators to read through lengthy articles. Methods for speeding up or automating the annotation process are thus of great importance. We propose a GO annotation approach using full-text biomedical documents for directing more relevant papers to curators. This system explores word density and gravitation relationships between genes and GO terms. Different density and gravitation models are built and several evaluation criteria are employed to assess the effects of the proposed methods. PMID:17503384

  3. Gene ontology annotation by density and gravitation models.

    PubMed

    Hou, Wen-Juan; Lin, Kevin Hsin-Yih; Chen, Hsin-Hsi

    2006-01-01

    Gene Ontology (GO) is developed to provide standard vocabularies of gene products in different databases. The process of annotating GO terms to genes requires curators to read through lengthy articles. Methods for speeding up or automating the annotation process are thus of great importance. We propose a GO annotation approach using full-text biomedical documents for directing more relevant papers to curators. This system explores word density and gravitation relationships between genes and GO terms. Different density and gravitation models are built and several evaluation criteria are employed to assess the effects of the proposed methods.

  4. Drug Education: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Mathieson, Moira B.

    This bibliography consists of a total of 215 entries dealing with drug education, including curriculum guides, and drawn from documents in the ERIC system. There are two sections, the first containing 130 annotated citations of documents and journal articles, and the second containing 85 citations of journal articles without annotations, but with…

  5. Adult Basic Education Annotated Bibliography.

    ERIC Educational Resources Information Center

    Carter, Nancy B.

    This annotated bibliography contains sections divided according to area of study, and within each category materials are listed alphabetically by publisher. Publishers and mailing addresses are listed at the end of the bibliography. Throughout the annotations, whenever specific grade level divisions are not named, the regular Adult Basic Education…

  6. Agents and Data Mining in Bioinformatics: Joining Data Gathering and Automatic Annotation with Classification and Distributed Clustering

    NASA Astrophysics Data System (ADS)

    Bazzan, Ana L. C.

    Multiagent systems and data mining techniques are being frequently used in genome projects, especially regarding the annotation process (annotation pipeline). This paper discusses annotation-related problems where agent-based and/or distributed data mining has been successfully employed.

  7. Comprehensive assessment of projected changes in water availability and aridity

    NASA Astrophysics Data System (ADS)

    Greve, Peter; Seneviratne, Sonia I.

    2015-04-01

    Substantial changes in the hydrological cycle are projected for the 21st century, with potential major impacts, particularly at regional scale. However, the projections are subject to major uncertainties and the metrics generally used to assess such changes do not fully account for the hydroclimatological characteristics of the land surface. In this context, the 'dry gets drier, wet gets wetter' paradigm is often used as a simplifying summary. However, recent studies have challenged the validity of the paradigm both for observations (Greve et al., 2014) and projections (Roderick et al., 2014), especially casting doubt on applying the widely used P-E (precipitation - evapotranspiration) metric over global land surfaces. Here we show in a comprehensive assessment that projected changes in mean annual P-E are generally not significant in most land areas, with the exception of the northern high latitudes where significant changes towards wetter conditions are found. We further show that the combination of decreasing P and increasing atmospheric demand (potential evapotranspiration, Ep) leads to a significant increase in aridity in many subtropical and neighbouring regions, thus confirming the paradigm for some dry regions, but invalidating it for the relative large fraction of the affected area which is currently in a humid or transitional climate regime. Combining both metrics (P-E and P-E_p) we conclude that the 'dry gets drier, wet gets wetter' paradigm is generally not confirmed for projected changes in most land areas (despite notable exceptions in the high latitudes and subtropics), because of a lack of robustness of the projected changes in some regions (tropics) and because humid to transitional regions are shifting to drier conditions, i.e. not following the paradigm. References Greve, P., Orlowsky, B., Mueller, B., Sheffield, J., Reichstein, M., & Seneviratne, S. I. Global assessment of trends in wetting and drying over land. Nature Geosci. 7, 716-721 (2014

  8. Annotated Bibliography of Multi-Ethnic Curriculum Materials.

    ERIC Educational Resources Information Center

    Nebraska State Dept. of Education, Lincoln. Div. of Instructional Services.

    This annotated bibliography of multiethnic curriculum materials is distributed by the Title IV Equal Educational Opportunity Project and funded under the Civil Rights Act of 1964. All materials listed are available from the Nebraska Title IV Equal Educational Opportunity Project. Each entry includes the title, author, editor or compiler, copyright…

  9. Assessment of Smolt Condition for Travel Time Analysis Project, 1987-1997 Project Review.

    SciTech Connect

    Schrock, Robin M.; Hans, Karen M.; Beeman, John W.

    1997-12-01

    The assessment of Smolt Condition for Travel Time Analysis Project (Bonneville Power Administration Project 87-401) monitored attributes of salmonid smolt physiology in the Columbia and Snake River basins from 1987 to 1997, under the Northwest Power Planning Council Fish and Wildlife Program, in cooperation with the Smolt Monitoring Program of the Fish Passage Center. The primary goal of the project was to investigate the physiological development of juvenile salmonids related to migration rates. The assumption was made that the level of smolt development, interacting with environmental factos such as flow, would be reflected in travel times. The Fish Passage Center applied the physiological measurements of smolt condition to Water Budget management, to regulate flows so as to decrease travel time and increase survival.

  10. 78 FR 43183 - Notice of Availability for Sharpe Permit Relinquishment Project Environmental Assessment Finding...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-07-19

    ... of the Secretary Notice of Availability for Sharpe Permit Relinquishment Project Environmental... Availability (NOA) for Sharpe Permit Relinquishment Project Environmental Assessment (EA) Finding of No... satisfy the project's purpose and need; however, the alternative was included in the...

  11. Hellsgate Winter Range : Wildlife Mitigation Project. Final Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration.

    1995-03-01

    Bonneville Power Administration (BPA) proposes to fund the Hellsgate Winter Range Wildlife Mitigation Project (Project) in a cooperative effort with the Colville Confederated Tribes and the Bureau of Indian Affairs (BIA). The proposed action would allow the sponsors to secure property and conduct wildlife management activities within the boundaries of the Colville Indian Reservation. This Final Environmental Assessment (EA) examines the potential environmental effects of acquiring and managing property for wildlife and wildlife habitat within a large project area. This area consists of several separated land parcels, of which 2,000 hectares (4,943 acres) have been purchased by BPA and an additional 4,640 hectares (11,466 acres) have been identified by the Colville Confederated Tribes for inclusion in the Project. Four proposed activities (habitat protection, habitat enhancement, operation and maintenance, and monitoring and evaluation) are analyzed. The proposed action is intended to meet the need for mitigation of wildlife and wildlife habitat that was adversely affected by the construction of Grand Coulee and Chief Joseph Dams and their reservoirs.

  12. 78 FR 25258 - Notice of Availability (NOA) for Sharpe Permit Relinquishment Project Environmental Assessment

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-30

    ... of the Secretary Notice of Availability (NOA) for Sharpe Permit Relinquishment Project Environmental... Relinquishment Project Environmental Assessment. SUMMARY: The Defense Logistics Agency (DLA) announces the availability of an environmental assessment (EA) for the potential environmental impacts associated with...

  13. Wildlife Habitat Impact Assessment, Chief Joseph Dam Project, Washington : Project Report 1992.

    SciTech Connect

    Kuehn, Douglas; Berger, Matthew

    1992-01-01

    Under the Pacific Northwest Electric Power Planning and Conservation Act of 1980, and the subsequent Northwest Power Planning Council`s Columbia River Basin Fish and Wildlife Program, a wildlife habitat impact assessment and identification of mitigation objectives have been developed for the US Army Corps of Engineer`s Chief Joseph Dam Project in north-central Washington. This study will form the basis for future mitigation planning and implementation.

  14. Assessing human rights impacts in corporate development projects

    SciTech Connect

    Salcito, Kendyl; Utzinger, Jürg; Weiss, Mitchell G.; Münch, Anna K.; Singer, Burton H.; Krieger, Gary R.; Wielga, Mark

    2013-09-15

    Human rights impact assessment (HRIA) is a process for systematically identifying, predicting and responding to the potential impact on human rights of a business operation, capital project, government policy or trade agreement. Traditionally, it has been conducted as a desktop exercise to predict the effects of trade agreements and government policies on individuals and communities. In line with a growing call for multinational corporations to ensure they do not violate human rights in their activities, HRIA is increasingly incorporated into the standard suite of corporate development project impact assessments. In this context, the policy world's non-structured, desk-based approaches to HRIA are insufficient. Although a number of corporations have commissioned and conducted HRIA, no broadly accepted and validated assessment tool is currently available. The lack of standardisation has complicated efforts to evaluate the effectiveness of HRIA as a risk mitigation tool, and has caused confusion in the corporate world regarding company duties. Hence, clarification is needed. The objectives of this paper are (i) to describe an HRIA methodology, (ii) to provide a rationale for its components and design, and (iii) to illustrate implementation of HRIA using the methodology in two selected corporate development projects—a uranium mine in Malawi and a tree farm in Tanzania. We found that as a prognostic tool, HRIA could examine potential positive and negative human rights impacts and provide effective recommendations for mitigation. However, longer-term monitoring revealed that recommendations were unevenly implemented, dependent on market conditions and personnel movements. This instability in the approach to human rights suggests a need for on-going monitoring and surveillance. -- Highlights: • We developed a novel methodology for corporate human rights impact assessment. • We piloted the methodology on two corporate projects—a mine and a plantation. • Human

  15. Project W-151 Tank 101-AZ Waste Retrieval System Year 2000 Compliance Assessment Project Plan

    SciTech Connect

    BUSSELL, J.H.

    1999-08-02

    This assessment describes the potential Year 2000 (Y2K) problems and describes the methods for achieving Y2K compliance for Project W-151, Tank 101-AZ Waste Retrieval System. The purpose of this assessment is to give an overview of the project. This document will not be updated and any dates contained in this document are estimates and may change. Two mixer pumps and instrumentation have been or are planned to be installed in waste tank 101-AZ to demonstrate solids mobilization. The information and experience gained during this process test will provide data for comparison with sludge mobilization prediction models and provide indication of the effects of mixer pump operation on an Aging Waste Facility tank. A limited description of system dates, functions, interfaces, potential Y2K problems, and date resolutions is presented. The project is presently on hold, and definitive design and procurement have been completed. This assessment will describe the methods, protocols, and practices to ensure that equipment and systems do not have Y2K problems.

  16. WEGO: a web tool for plotting GO annotations.

    PubMed

    Ye, Jia; Fang, Lin; Zheng, Hongkun; Zhang, Yong; Chen, Jie; Zhang, Zengjin; Wang, Jing; Li, Shengting; Li, Ruiqiang; Bolund, Lars; Wang, Jun

    2006-07-01

    Unified, structured vocabularies and classifications freely provided by the Gene Ontology (GO) Consortium are widely accepted in most of the large scale gene annotation projects. Consequently, many tools have been created for use with the GO ontologies. WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO annotation results. Different from other commercial software for creating chart, WEGO is designed to deal with the directed acyclic graph structure of GO to facilitate histogram creation of GO annotation results. WEGO has been used widely in many important biological research projects, such as the rice genome project and the silkworm genome project. It has become one of the daily tools for downstream gene annotation analysis, especially when performing comparative genomics tasks. WEGO, along with the two other tools, namely External to GO Query and GO Archive Query, are freely available for all users at http://wego.genomics.org.cn. There are two available mirror sites at http://wego2.genomics.org.cn and http://wego.genomics.com.cn. Any suggestions are welcome at wego@genomics.org.cn. PMID:16845012

  17. WEGO: a web tool for plotting GO annotations

    PubMed Central

    Ye, Jia; Fang, Lin; Zheng, Hongkun; Zhang, Yong; Chen, Jie; Zhang, Zengjin; Wang, Jing; Li, Shengting; Li, Ruiqiang; Bolund, Lars; Wang, Jun

    2006-01-01

    Unified, structured vocabularies and classifications freely provided by the Gene Ontology (GO) Consortium are widely accepted in most of the large scale gene annotation projects. Consequently, many tools have been created for use with the GO ontologies. WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO annotation results. Different from other commercial software for creating chart, WEGO is designed to deal with the directed acyclic graph structure of GO to facilitate histogram creation of GO annotation results. WEGO has been used widely in many important biological research projects, such as the rice genome project and the silkworm genome project. It has become one of the daily tools for downstream gene annotation analysis, especially when performing comparative genomics tasks. WEGO, along with the two other tools, namely External to GO Query and GO Archive Query, are freely available for all users at . There are two available mirror sites at and . Any suggestions are welcome at wego@genomics.org.cn. PMID:16845012

  18. Idaho National Engineering Laboratory Sewer System Upgrade Project. Environmental Assessment

    SciTech Connect

    Not Available

    1994-04-01

    The Department of Energy (DOE) has prepared an environmental assessment for a proposed Sewer System Upgrade Project at the Idaho National Engineering Laboratory (INEL) near Idaho Falls, Idaho. The proposed action would include activities conducted at the Central Facilities Area, Test Reactor Area, and the Containment Test Facility at the Test Area North at INEL. The proposed action would consist of replacing or remodeling the existing sewage treatment plants at the Central Facilities Area, Test Reactor Area, and Containment Test Facility. Also, a new sewage testing laboratory would be constructed at the Central Facilities Area. Finally, the proposed action would include replacing, repairing, and/or adding sewer lines in areas where needed.

  19. Genomic Data and Annotation from the SEED

    DOE Data Explorer

    Fonstein, Michael; Kogan, Yakov; Osterman, Andrei; Overbeek, Ross; Vonstein, Veronika The Fellowship for Interpretation of Genomes (FIG)

    The SEED Project is a cooperative effort to annotate ever-expanding genomic data so researchers can conduct effective comparative analyses of genomes. Launched in 2003 by the Fellowship for Interpretation of Genomes (FIG), the project is one of several initiatives in ongoing development of data curation systems. SEED is designed to be used by scientists from numerous centers and with varied research objectives. As such, several institutions have since joined FIG in a consortium, including the University of Chicago, DOE’s Argonne National Laboratory (ANL), the University of Illinois at Urbana-Champaign, and others. As one example, ANL has used SEED to develop the National Microbial Pathogen Data Resource. Other agencies and institutions have used the project to discover genome components and clarify gene functions such as metabolism. SEED also has enabled researchers to conduct comparative analyses of closely related genomes and has supported derivation of stoichiometric models to understand metabolic processes. The SEED Project has been extended to support metagenomic samples and concomitant analytical tools. Moreover, the number of genomes being introduced into SEED is growing very rapidly. Building a framework to support this growth while providing highly accurate annotations is centrally important to SEED. The project’s subsystem-based annotation strategy has become the technological foundation for addressing these challenges.(copied from Appendix 7 of Systems Biology Knowledgebase for a New Era in Biology, A Genomics:GTL Report from the May 2008 Workshop, DOE/SC-0113, Grequrick, S; Fredrickson, J.K.; Stevens, R., Pub March 1, 2009.)

  20. Tiering strategic environmental assessment and project environmental impact assessment in highway planning in Sao Paulo, Brazil

    SciTech Connect

    Sanchez, Luis E. Silva-Sanchez, Solange S.

    2008-10-15

    Constructing highways in dense urban areas is always a challenge. In Sao Paulo Metropolitan Region, heavy truck traffic contributes to clog streets and expressways alike. As part of the traffic neither originates nor head to the region, a peripheral highway has been proposed to reduce traffic problems. This project, called Rodoanel, is an expressway approximately 175 km long. The fact that the projected south and north sections would cross catchments that supply most of the metropolis water demand was strongly disputed and made the environmental permitting process particularly difficult. The agency in charge commissioned a strategic environmental assessment (SEA) of a revamped project, and called it the Rodoanel Programme. However, the SEA report failed to satisfactorily take account of significant strategic issues. Among these, the highway potential effect of inducing urban sprawl over water protection zones is the most critical issue, as it emerged later as a hurdle to project licensing. Conclusion is that, particularly where no agreed-upon framework for SEA exists, when vertical tiering with downstream project EIA is sought, then a careful scoping of strategic issues is more than necessary. If an agreement on 'what is strategic' is not reached and not recognized by influential stakeholders, then the unsettled conflicts will be transferred to project EIA. In such a context, SEA will have added another loop to the usually long road to project approval.

  1. Gene Ontology annotations and resources.

    PubMed

    Blake, J A; Dolan, M; Drabkin, H; Hill, D P; Li, Ni; Sitnikov, D; Bridges, S; Burgess, S; Buza, T; McCarthy, F; Peddinti, D; Pillai, L; Carbon, S; Dietze, H; Ireland, A; Lewis, S E; Mungall, C J; Gaudet, P; Chrisholm, R L; Fey, P; Kibbe, W A; Basu, S; Siegele, D A; McIntosh, B K; Renfro, D P; Zweifel, A E; Hu, J C; Brown, N H; Tweedie, S; Alam-Faruque, Y; Apweiler, R; Auchinchloss, A; Axelsen, K; Bely, B; Blatter, M -C; Bonilla, C; Bouguerleret, L; Boutet, E; Breuza, L; Bridge, A; Chan, W M; Chavali, G; Coudert, E; Dimmer, E; Estreicher, A; Famiglietti, L; Feuermann, M; Gos, A; Gruaz-Gumowski, N; Hieta, R; Hinz, C; Hulo, C; Huntley, R; James, J; Jungo, F; Keller, G; Laiho, K; Legge, D; Lemercier, P; Lieberherr, D; Magrane, M; Martin, M J; Masson, P; Mutowo-Muellenet, P; O'Donovan, C; Pedruzzi, I; Pichler, K; Poggioli, D; Porras Millán, P; Poux, S; Rivoire, C; Roechert, B; Sawford, T; Schneider, M; Stutz, A; Sundaram, S; Tognolli, M; Xenarios, I; Foulgar, R; Lomax, J; Roncaglia, P; Khodiyar, V K; Lovering, R C; Talmud, P J; Chibucos, M; Giglio, M Gwinn; Chang, H -Y; Hunter, S; McAnulla, C; Mitchell, A; Sangrador, A; Stephan, R; Harris, M A; Oliver, S G; Rutherford, K; Wood, V; Bahler, J; Lock, A; Kersey, P J; McDowall, D M; Staines, D M; Dwinell, M; Shimoyama, M; Laulederkind, S; Hayman, T; Wang, S -J; Petri, V; Lowry, T; D'Eustachio, P; Matthews, L; Balakrishnan, R; Binkley, G; Cherry, J M; Costanzo, M C; Dwight, S S; Engel, S R; Fisk, D G; Hitz, B C; Hong, E L; Karra, K; Miyasato, S R; Nash, R S; Park, J; Skrzypek, M S; Weng, S; Wong, E D; Berardini, T Z; Huala, E; Mi, H; Thomas, P D; Chan, J; Kishore, R; Sternberg, P; Van Auken, K; Howe, D; Westerfield, M

    2013-01-01

    The Gene Ontology (GO) Consortium (GOC, http://www.geneontology.org) is a community-based bioinformatics resource that classifies gene product function through the use of structured, controlled vocabularies. Over the past year, the GOC has implemented several processes to increase the quantity, quality and specificity of GO annotations. First, the number of manual, literature-based annotations has grown at an increasing rate. Second, as a result of a new 'phylogenetic annotation' process, manually reviewed, homology-based annotations are becoming available for a broad range of species. Third, the quality of GO annotations has been improved through a streamlined process for, and automated quality checks of, GO annotations deposited by different annotation groups. Fourth, the consistency and correctness of the ontology itself has increased by using automated reasoning tools. Finally, the GO has been expanded not only to cover new areas of biology through focused interaction with experts, but also to capture greater specificity in all areas of the ontology using tools for adding new combinatorial terms. The GOC works closely with other ontology developers to support integrated use of terminologies. The GOC supports its user community through the use of e-mail lists, social media and web-based resources.

  2. Gene Ontology annotations and resources.

    PubMed

    Blake, J A; Dolan, M; Drabkin, H; Hill, D P; Li, Ni; Sitnikov, D; Bridges, S; Burgess, S; Buza, T; McCarthy, F; Peddinti, D; Pillai, L; Carbon, S; Dietze, H; Ireland, A; Lewis, S E; Mungall, C J; Gaudet, P; Chrisholm, R L; Fey, P; Kibbe, W A; Basu, S; Siegele, D A; McIntosh, B K; Renfro, D P; Zweifel, A E; Hu, J C; Brown, N H; Tweedie, S; Alam-Faruque, Y; Apweiler, R; Auchinchloss, A; Axelsen, K; Bely, B; Blatter, M -C; Bonilla, C; Bouguerleret, L; Boutet, E; Breuza, L; Bridge, A; Chan, W M; Chavali, G; Coudert, E; Dimmer, E; Estreicher, A; Famiglietti, L; Feuermann, M; Gos, A; Gruaz-Gumowski, N; Hieta, R; Hinz, C; Hulo, C; Huntley, R; James, J; Jungo, F; Keller, G; Laiho, K; Legge, D; Lemercier, P; Lieberherr, D; Magrane, M; Martin, M J; Masson, P; Mutowo-Muellenet, P; O'Donovan, C; Pedruzzi, I; Pichler, K; Poggioli, D; Porras Millán, P; Poux, S; Rivoire, C; Roechert, B; Sawford, T; Schneider, M; Stutz, A; Sundaram, S; Tognolli, M; Xenarios, I; Foulgar, R; Lomax, J; Roncaglia, P; Khodiyar, V K; Lovering, R C; Talmud, P J; Chibucos, M; Giglio, M Gwinn; Chang, H -Y; Hunter, S; McAnulla, C; Mitchell, A; Sangrador, A; Stephan, R; Harris, M A; Oliver, S G; Rutherford, K; Wood, V; Bahler, J; Lock, A; Kersey, P J; McDowall, D M; Staines, D M; Dwinell, M; Shimoyama, M; Laulederkind, S; Hayman, T; Wang, S -J; Petri, V; Lowry, T; D'Eustachio, P; Matthews, L; Balakrishnan, R; Binkley, G; Cherry, J M; Costanzo, M C; Dwight, S S; Engel, S R; Fisk, D G; Hitz, B C; Hong, E L; Karra, K; Miyasato, S R; Nash, R S; Park, J; Skrzypek, M S; Weng, S; Wong, E D; Berardini, T Z; Huala, E; Mi, H; Thomas, P D; Chan, J; Kishore, R; Sternberg, P; Van Auken, K; Howe, D; Westerfield, M

    2013-01-01

    The Gene Ontology (GO) Consortium (GOC, http://www.geneontology.org) is a community-based bioinformatics resource that classifies gene product function through the use of structured, controlled vocabularies. Over the past year, the GOC has implemented several processes to increase the quantity, quality and specificity of GO annotations. First, the number of manual, literature-based annotations has grown at an increasing rate. Second, as a result of a new 'phylogenetic annotation' process, manually reviewed, homology-based annotations are becoming available for a broad range of species. Third, the quality of GO annotations has been improved through a streamlined process for, and automated quality checks of, GO annotations deposited by different annotation groups. Fourth, the consistency and correctness of the ontology itself has increased by using automated reasoning tools. Finally, the GO has been expanded not only to cover new areas of biology through focused interaction with experts, but also to capture greater specificity in all areas of the ontology using tools for adding new combinatorial terms. The GOC works closely with other ontology developers to support integrated use of terminologies. The GOC supports its user community through the use of e-mail lists, social media and web-based resources. PMID:23161678

  3. Open Ocean Assessments for Management in the GEF Transboundary Waters Assessment Project (TWAP)

    NASA Astrophysics Data System (ADS)

    Fischer, A. S.; Alverson, K. D.

    2010-12-01

    A methodology for a thematic and scientifically-credible assessment of Open Ocean waters as a part of the Global Environment Facility (GEF) Transboundary Waters Assessment Project (TWAP) has been developed in the last 18 months by the Intergovernmental Oceanographic Commission of UNESCO, and is presented for feedback and comment. While developed to help the GEF International Waters focal area target investment to manage looming environmental threats in interlinked freshwater and marine systems (a very focused decision support system), the assessment methodology could contribute to other assessment and management efforts in the UN system and elsewhere. Building on a conceptual framework that describes the relationships between human systems and open ocean natural systems, and on mapping of the human impact on the marine environment, the assessment will evaluate and make projections on a thematic basis, identifying key metrics, indices, and indicators. These themes will include the threats on key ecosystem services of climate change through sea level rise, changed stratification, warming, and ocean acidification; vulnerabilities of ecosystems, habitats, and living marine resources; the impact and sustainability of fisheries; and pollution. Global-level governance arrangements will also be evaluated, with an eye to identifying scope for improved global-level management. The assessment will build on sustained ocean observing systems, model projections, and an assessment of scientific literature, as well as tools for combining knowledge to support identification of priority concerns and in developing scenarios for management. It will include an assessment of key research and observing needs as one way to deal with the scientific uncertainty inherent in such an exercise, and to better link policy and science agendas.

  4. A guide to best practices for Gene Ontology (GO) manual annotation.

    PubMed

    Balakrishnan, Rama; Harris, Midori A; Huntley, Rachael; Van Auken, Kimberly; Cherry, J Michael

    2013-01-01

    The Gene Ontology Consortium (GOC) is a community-based bioinformatics project that classifies gene product function through the use of structured controlled vocabularies. A fundamental application of the Gene Ontology (GO) is in the creation of gene product annotations, evidence-based associations between GO definitions and experimental or sequence-based analysis. Currently, the GOC disseminates 126 million annotations covering >374,000 species including all the kingdoms of life. This number includes two classes of GO annotations: those created manually by experienced biocurators reviewing the literature or by examination of biological data (1.1 million annotations covering 2226 species) and those generated computationally via automated methods. As manual annotations are often used to propagate functional predictions between related proteins within and between genomes, it is critical to provide accurate consistent manual annotations. Toward this goal, we present here the conventions defined by the GOC for the creation of manual annotation. This guide represents the best practices for manual annotation as established by the GOC project over the past 12 years. We hope this guide will encourage research communities to annotate gene products of their interest to enhance the corpus of GO annotations available to all. DATABASE URL: http://www.geneontology.org.

  5. Blue Creek Winter Range : Wildlife Mitigation Project : Final Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration; United States. Bureau of Indian Affairs; Spokane Tribe of the Spokane Reservation, Washington

    1994-11-01

    Bonneville Power Administration (BPA) proposes to fund that portion of the Washington Wildlife Agreement pertaining to the Blue Creek Winter Range Wildlife Mitigation Project (Project) in a cooperative effort with the Spokane Tribe, Upper Columbia United Tribes, and the Bureau of Indian Affairs (BIA). If fully implemented, the proposed action would allow the sponsors to protect and enhance 2,631 habitat units of big game winter range and riparian shrub habitat on 2,185 hectares (5,400 acres) of Spokane Tribal trust lands, and to conduct long term wildlife management activities within the Spokane Indian Reservation project area. This Final Environmental Assessment (EA) examines the potential environmental effects of securing land and conducting wildlife habitat enhancement and long term management activities within the boundaries of the Spokane Indian Reservation. Four proposed activities (habitat protection, habitat enhancement, operation and maintenance, and monitoring and evaluation) are analyzed. The proposed action is intended to meet the need for mitigation of wildlife and wildlife habitat adversely affected by the construction of Grand Coulee Dam and its reservoir.

  6. Willow Creek Wildlife Mitigation Project. Final Environmental Assessment.

    SciTech Connect

    1995-04-01

    Today`s notice announces BPA`s proposal to fund land acquisition or acquisition of a conservation easement and a wildlife management plan to protect and enhance wildlife habitat at the Willow Creek Natural Area in Eugene, Oregon. This action would provide partial mitigation for wildlife and wildlife habitat lost by the development of Federal hydroelectric projects in the Willamette River Basin. The project is consistent with BPA`s obligations under provisions of the Pacific Northwest Electric Power Planning and Conservation Act of 1980 as outlined by the Northwest Power Planning Council`s 1994 Columbia River Basin Fish and Wildlife Program. BPA has prepared an environmental assessment (DOE/EA-1023) evaluating the proposed project. Based on the analysis in the EA, BPA has determined that the proposed action is not a major Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an environmental impact statement (EIS) is not required and BPA is issuing this FONSI.

  7. Jannovar: a java library for exome annotation.

    PubMed

    Jäger, Marten; Wang, Kai; Bauer, Sebastian; Smedley, Damian; Krawitz, Peter; Robinson, Peter N

    2014-05-01

    Transcript-based annotation and pedigree analysis are two basic steps in the computational analysis of whole-exome sequencing experiments in genetic diagnostics and disease-gene discovery projects. Here, we present Jannovar, a stand-alone Java application as well as a Java library designed to be used in larger software frameworks for exome and genome analysis. Jannovar uses an interval tree to identify all transcripts affected by a given variant, and provides Human Genome Variation Society-compliant annotations both for variants affecting coding sequences and splice junctions as well as untranslated regions and noncoding RNA transcripts. Jannovar can also perform family-based pedigree analysis with Variant Call Format (VCF) files with data from members of a family segregating a Mendelian disorder. Using a desktop computer, Jannovar requires a few seconds to annotate a typical VCF file with exome data. Jannovar is freely available under the BSD2 license. Source code as well as the Java application and library file can be downloaded from http://compbio.charite.de (with tutorial) and https://github.com/charite/jannovar. PMID:24677618

  8. Geohazard assessment lifecycle for a natural gas pipeline project

    NASA Astrophysics Data System (ADS)

    Lekkakis, D.; Boone, M. D.; Strassburger, E.; Li, Z.; Duffy, W. P.

    2015-09-01

    the assessment, further exploration was proposed. In cases where rerouting was constrained, mitigation via structural measures was proposed. This paper further discusses the cost, schedule and resource challenges of planning and executing such a large-scale geotechnical investigation, the interfaces between the various disciplines involved during the assessment, the innovative tools employed for the field mapping, the classifications developed for mapping landslides, karst geology, and trench excavatability, determining liquefaction stretches and the process for the site localization of the Above Ground Installations (AGI). It finally discusses the objectives of the FEED study in terms of providing a route, a ± 20% project cost estimate and a schedule, and the additional engineering work foreseen to take place in the detailed engineering phase of the project.

  9. The discrepancies in the results of bioinformatics tools for genomic structural annotation

    NASA Astrophysics Data System (ADS)

    Pawełkowicz, Magdalena; Nowak, Robert; Osipowski, Paweł; Rymuszka, Jacek; Świerkula, Katarzyna; Wojcieszek, Michał; Przybecki, Zbigniew

    2014-11-01

    A major focus of sequencing project is to identify genes in genomes. However it is necessary to define the variety of genes and the criteria for identifying them. In this work we present discrepancies and dependencies from the application of different bioinformatic programs for structural annotation performed on the cucumber data set from Polish Consortium of Cucumber Genome Sequencing. We use Fgenesh, GenScan and GeneMark to automated structural annotation, the results have been compared to reference annotation.

  10. The ENCOAL Mild Coal Gasification Project, A DOE Assessment

    SciTech Connect

    National Energy Technology Laboratory

    2002-03-15

    This report is a post-project assessment of the ENCOAL{reg_sign} Mild Coal Gasification Project, which was selected under Round III of the U.S. Department of Energy (DOE) Clean Coal Technology (CCT) Demonstration Program. The CCT Demonstration Program is a government and industry cofunded technology development effort to demonstrate a new generation of innovative coal utilization processes in a series of commercial-scale facilities. The ENCOAL{reg_sign} Corporation, a wholly-owned subsidiary of Bluegrass Coal Development Company (formerly SMC Mining Company), which is a subsidiary of Ziegler Coal Holding Company, submitted an application to the DOE in August 1989, soliciting joint funding of the project in the third round of the CCT Program. The project was selected by DOE in December 1989, and the Cooperative Agreement (CA) was approved in September 1990. Construction, commissioning, and start-up of the ENCOAL{reg_sign} mild coal gasification facility was completed in June 1992. In October 1994, ENCOAL{reg_sign} was granted a two-year extension of the CA with the DOE, that carried through to September 17, 1996. ENCOAL{reg_sign} was then granted a six-month, no-cost extension through March 17, 1997. Overall, DOE provided 50 percent of the total project cost of $90,664,000. ENCOAL{reg_sign} operated the 1,000-ton-per-day mild gasification demonstration plant at Triton Coal Company's Buckskin Mine near Gillette, Wyoming, for over four years. The process, using Liquids From Coal (LFC{trademark}) technology originally developed by SMC Mining Company and SGI International, utilizes low-sulfur Powder River Basin (PRB) coal to produce two new fuels, Process-Derived Fuel (PDF{trademark}) and Coal-Derived Liquids (CDL{trademark}). The products, as alternative fuel sources, are capable of significantly lowering current sulfur emissions at industrial and utility boiler sites throughout the nation thus reducing pollutants causing acid rain. In support of this overall objective

  11. Ultrasound Volume Projection Imaging for Assessment of Scoliosis.

    PubMed

    Cheung, Chung-Wai James; Zhou, Guang-Quan; Law, Siu-Yin; Mak, Tak-Man; Lai, Ka-Lee; Zheng, Yong-Ping

    2015-08-01

    The standing radiograph is used as a gold standard to diagnose spinal deformity including scoliosis, a medical condition defined as lateral spine curvature > 10°. However, the health concern of X-ray and large inter-observer variation of measurements on X-ray images have significantly restricted its application, particularly for scoliosis screening and close follow-up for adolescent patients. In this study, a radiation-free freehand 3-D ultrasound system was developed for scoliosis assessment using a volume projection imaging method. Based on the obtained coronal view images, two measurement methods were proposed using transverse process and spinous profile as landmarks, respectively. As a reliability study, 36 subjects (age: 30.1 ±14.5; male: 12; female: 24) with different degrees of scoliosis were scanned using the system to test the inter- and intra-observer repeatability. The intra- and inter-observer tests indicated that the new assessment methods were repeatable, with ICC larger than 0.92. Small intra- and inter-observer variations of measuring spine curvature were observed for the two measurement methods (intra-: 1.4 ±1.0° and 1.4 ±1.1°; inter-: 2.2 ±1.6° and 2.5 ±1.6°). The results also showed that the spinal curvature obtained by the new method had good linear correlations with X-ray Cobb's method (R2 = 0.8, p < 0.001, 29 subjects). These results suggested that the ultrasound volume projection imaging method can be a promising approach for the assessment of scoliosis, and further research should be followed up to demonstrate its potential clinical applications for mass screening and curve progression and treatment outcome monitoring of scoliosis patients.

  12. DOE Hydropower Program biennial report 1990--1991 (with updated annotated bibliography)

    SciTech Connect

    Chappell, J.R.; Rinehart, B.N.; Sommers, G.L. ); Sale, M.J. )

    1991-07-01

    This report summarizes the activities of the US Department of Energy's (DOE) Hydropower Program for fiscal years 1990 and 1991, and provides an annotated bibliography of research, engineering, operations, regulations, and costs of projects pertinent to hydropower development. The Hydropower Program is organized as follows: background (including Technology Development and Engineering Research and Development); Resource Assessment; National Energy Strategy; Technology Transfer; Environmental Research; and, the bibliography discusses reports written by both private and non-Federal Government sectors. Most reports are available from the National Technical Information Service. 5 figs., 2 tabs.

  13. Annotated Bibliography on Religious Development.

    ERIC Educational Resources Information Center

    Bucher, Anton A.; Reich, K. Helmut

    1991-01-01

    Presents an annotated bibliography on religious development that covers the areas of psychology and religion, measurement of religiousness, religious development during the life cycle, religious experiences, conversion, religion and morality, and images of God. (Author/BB)

  14. Patient Education: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Simmons, Jeannette

    Topics included in this annotated bibliography on patient education are (1) background on development of patient education programs, (2) patient education interventions, (3) references for health professionals, and (4) research and evaluation in patient education. (TA)

  15. Background and Reflections on the Life Cycle Assessment Harmonization Project

    SciTech Connect

    Heath, G. A.; Mann, M. K.

    2012-04-01

    Despite the ever-growing body of life cycle assessment (LCA) literature on electricity generation technologies, inconsistent methods and assumptions hamper comparison across studies and pooling of published results. Synthesis of the body of previous research is necessary to generate robust results to assess and compare environmental performance of different energy technologies for the benefit of policy makers, managers, investors, and citizens. With funding from the U.S. Department of Energy, the National Renewable Energy Laboratory initiated the LCA Harmonization Project in an effort to rigorously leverage the numerous individual studies to develop collective insights. The goals of this project were to: (1) understand the range of published results of LCAs of electricity generation technologies, (2) reduce the variability in published results that stem from inconsistent methods and assumptions, and (3) clarify the central tendency of published estimates to make the collective results of LCAs available to decision makers in the near term. The LCA Harmonization Project's initial focus was evaluating life cycle greenhouse gas (GHG) emissions from electricity generation technologies. Six articles from this first phase of the project are presented in a special supplemental issue of the Journal of Industrial Ecology on Meta-Analysis of LCA: coal (Whitaker et al. 2012), concentrating solar power (Burkhardt et al. 2012), crystalline silicon photovoltaics (PVs) (Hsu et al. 2012), thin-film PVs (Kim et al. 2012), nuclear (Warner and Heath 2012), and wind (Dolan and Heath 2012). Harmonization is a meta-analytical approach that addresses inconsistency in methods and assumptions of previously published life cycle impact estimates. It has been applied in a rigorous manner to estimates of life cycle GHG emissions from many categories of electricity generation technologies in articles that appear in this special supplemental supplemental issue, reducing the variability and

  16. Life Cycle Assessment of Biochar - EuroChar Project

    NASA Astrophysics Data System (ADS)

    Rack, M.; Woods, J.

    2012-04-01

    One of the most significant challenges faced by modern-day society is that of global warming. An exclusive focus on reducing the greenhouse gas (GHG) emissions will not suffice and therefore technologies capable of removing CO2 directly from the atmosphere at low or minimal cost are gaining increased attention. The production and use of biochar is an example of such an emerging mitigation strategy. However, as with any novel product, process and technology it is vital to conduct an assessment of the entire life cycle in order to determine the environmental impacts of the new concept in addition to analysing the other sustainability criteria. Life Cycle Assessment (LCA), standardized by ISO (2006a), is an example of a tool used to calculate the environmental impacts of a product or process. Imperial College London will follow the guidelines and recommendations of the ISO 14040 series (ISO 2002, ISO 2006a-b) and the International Life Cycle Data System (ILCD) Handbook (EC JRC IES, 2010a-e), and will use the SimaPro software to conduct a LCA of the biochar supply chains for the EuroChar project. EuroChar ('biochar for Carbon sequestration and large-scale removal of GHG from the atmosphere') is a project funded by the European Commission under its Seventh Framework Programme (FP7). EuroChar aims to investigate and reduce uncertainties around the impacts of, and opportunities for, biochar and, in particular, explore a possible introduction into modern agricultural systems in Europe, thereby moving closer to the determination of the true potential of biochar. EuroChar will use various feedstocks, ranging from wheat straw to olive residues and poplar, as feedstocks for biochar production and will focus on two conversion technologies, Hydrothermal Carbonization (HTC) and Thermochemical Carbonization (TC), followed by the application of the biochar in crop-growth field trials in England, France and Italy. In April 2012, the EuroChar project will be at its halfway mark and

  17. Metagenomic gene annotation by a homology-independent approach

    SciTech Connect

    Froula, Jeff; Zhang, Tao; Salmeen, Annette; Hess, Matthias; Kerfeld, Cheryl A.; Wang, Zhong; Du, Changbin

    2011-06-02

    Fully understanding the genetic potential of a microbial community requires functional annotation of all the genes it encodes. The recently developed deep metagenome sequencing approach has enabled rapid identification of millions of genes from a complex microbial community without cultivation. Current homology-based gene annotation fails to detect distantly-related or structural homologs. Furthermore, homology searches with millions of genes are very computational intensive. To overcome these limitations, we developed rhModeller, a homology-independent software pipeline to efficiently annotate genes from metagenomic sequencing projects. Using cellulases and carbonic anhydrases as two independent test cases, we demonstrated that rhModeller is much faster than HMMER but with comparable accuracy, at 94.5percent and 99.9percent accuracy, respectively. More importantly, rhModeller has the ability to detect novel proteins that do not share significant homology to any known protein families. As {approx}50percent of the 2 million genes derived from the cow rumen metagenome failed to be annotated based on sequence homology, we tested whether rhModeller could be used to annotate these genes. Preliminary results suggest that rhModeller is robust in the presence of missense and frameshift mutations, two common errors in metagenomic genes. Applying the pipeline to the cow rumen genes identified 4,990 novel cellulases candidates and 8,196 novel carbonic anhydrase candidates.In summary, we expect rhModeller to dramatically increase the speed and quality of metagnomic gene annotation.

  18. NCBI prokaryotic genome annotation pipeline.

    PubMed

    Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat; Chetvernin, Vyacheslav; Nawrocki, Eric P; Zaslavsky, Leonid; Lomsadze, Alexandre; Pruitt, Kim D; Borodovsky, Mark; Ostell, James

    2016-08-19

    Recent technological advances have opened unprecedented opportunities for large-scale sequencing and analysis of populations of pathogenic species in disease outbreaks, as well as for large-scale diversity studies aimed at expanding our knowledge across the whole domain of prokaryotes. To meet the challenge of timely interpretation of structure, function and meaning of this vast genetic information, a comprehensive approach to automatic genome annotation is critically needed. In collaboration with Georgia Tech, NCBI has developed a new approach to genome annotation that combines alignment based methods with methods of predicting protein-coding and RNA genes and other functional elements directly from sequence. A new gene finding tool, GeneMarkS+, uses the combined evidence of protein and RNA placement by homology as an initial map of annotation to generate and modify ab initio gene predictions across the whole genome. Thus, the new NCBI's Prokaryotic Genome Annotation Pipeline (PGAP) relies more on sequence similarity when confident comparative data are available, while it relies more on statistical predictions in the absence of external evidence. The pipeline provides a framework for generation and analysis of annotation on the full breadth of prokaryotic taxonomy. For additional information on PGAP see https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ and the NCBI Handbook, https://www.ncbi.nlm.nih.gov/books/NBK174280/. PMID:27342282

  19. NCBI prokaryotic genome annotation pipeline.

    PubMed

    Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat; Chetvernin, Vyacheslav; Nawrocki, Eric P; Zaslavsky, Leonid; Lomsadze, Alexandre; Pruitt, Kim D; Borodovsky, Mark; Ostell, James

    2016-08-19

    Recent technological advances have opened unprecedented opportunities for large-scale sequencing and analysis of populations of pathogenic species in disease outbreaks, as well as for large-scale diversity studies aimed at expanding our knowledge across the whole domain of prokaryotes. To meet the challenge of timely interpretation of structure, function and meaning of this vast genetic information, a comprehensive approach to automatic genome annotation is critically needed. In collaboration with Georgia Tech, NCBI has developed a new approach to genome annotation that combines alignment based methods with methods of predicting protein-coding and RNA genes and other functional elements directly from sequence. A new gene finding tool, GeneMarkS+, uses the combined evidence of protein and RNA placement by homology as an initial map of annotation to generate and modify ab initio gene predictions across the whole genome. Thus, the new NCBI's Prokaryotic Genome Annotation Pipeline (PGAP) relies more on sequence similarity when confident comparative data are available, while it relies more on statistical predictions in the absence of external evidence. The pipeline provides a framework for generation and analysis of annotation on the full breadth of prokaryotic taxonomy. For additional information on PGAP see https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ and the NCBI Handbook, https://www.ncbi.nlm.nih.gov/books/NBK174280/.

  20. Assess the flood resilience tools integration in the landuse projects

    NASA Astrophysics Data System (ADS)

    Moulin, E.; Deroubaix, J.-F.

    2012-04-01

    Despite a severe regulation concerning the building in flooding areas, 80% of these areas are already built in the Greater Paris (Paris, Val-de-Marne, Hauts-de-Seine and Seine-Saint-Denis). The land use in flooding area is presented as one of the main solutions to solve the ongoing real estate pressure. For instance some of the industrial wastelands located along the river are currently in redevelopment and residential buildings are planned. So the landuse in the flooding areas is currently a key issue in the development of the Greater Paris area. To deal with floods there are some resilience tools, whether structural (such as perimeter barriers or building aperture barriers, etc) or non structural (such as warning systems, etc.). The technical solutions are available and most of the time efficient1. Still, we notice that these tools are not much implemented. The people; stakeholders and inhabitants, literally seems to be not interested. This papers focus on the integration of resilience tools in urban projects. Indeed one of the blockages in the implementation of an efficient flood risk prevention policy is the lack of concern of the landuse stakeholders and the inhabitants for the risk2. We conducted an important number of interviews with stakeholders involved in various urban projects and we assess, in this communication, to what extent the improvement of the resilience to floods is considered as a main issue in the execution of an urban project? How this concern is maintained or could be maintained throughout the project. Is there a dilution of this concern? In order to develop this topic we rely on a case study. The "Ardoines" is a project aiming at redeveloping an industrial site (South-East Paris), into a project including residential and office buildings and other amenities. In order to elaborate the master plan, the urban planning authority brought together some flood risk experts. According to the comments of the experts, the architect in charge of the

  1. Assessing soil and groundwater contamination in a metropolitan redevelopment project.

    PubMed

    Yun, Junki; Lee, Ju Young; Khim, Jeehyeong; Ji, Won Hyun

    2013-08-01

    The purpose of this study was to assess contaminated soil and groundwater for the urban redevelopment of a rapid transit railway and a new mega-shopping area. Contaminated soil and groundwater may interfere with the progress of this project, and residents and shoppers may be exposed to human health risks. The study area has been remediated after application of first remediation technologies. Of the entire area, several sites were still contaminated by waste materials and petroleum. For zinc (Zn) contamination, high Zn concentrations were detected because waste materials were disposed in the entire area. For petroleum contamination, high total petroleum hydrocarbon (TPH) and hydrocarbon degrading microbe concentrations were observed at the depth of 7 m because the underground petroleum storage tank had previously been located at this site. Correlation results suggest that TPH (soil) concentration is still related with TPH (groundwater) concentration. The relationship is taken into account in the Spearman coefficient (α). PMID:23307052

  2. Advanced Seismic Probabilistic Risk Assessment Demonstration Project Plan

    SciTech Connect

    Justin Coleman

    2014-09-01

    Idaho National Laboratories (INL) has an ongoing research and development (R&D) project to remove excess conservatism from seismic probabilistic risk assessments (SPRA) calculations. These risk calculations should focus on providing best estimate results, and associated insights, for evaluation and decision-making. This report presents a plan for improving our current traditional SPRA process using a seismic event recorded at a nuclear power plant site, with known outcomes, to improve the decision making process. SPRAs are intended to provide best estimates of the various combinations of structural and equipment failures that can lead to a seismic induced core damage event. However, in general this approach has been conservative, and potentially masks other important events (for instance, it was not the seismic motions that caused the Fukushima core melt events, but the tsunami ingress into the facility).

  3. Assessing soil and groundwater contamination in a metropolitan redevelopment project.

    PubMed

    Yun, Junki; Lee, Ju Young; Khim, Jeehyeong; Ji, Won Hyun

    2013-08-01

    The purpose of this study was to assess contaminated soil and groundwater for the urban redevelopment of a rapid transit railway and a new mega-shopping area. Contaminated soil and groundwater may interfere with the progress of this project, and residents and shoppers may be exposed to human health risks. The study area has been remediated after application of first remediation technologies. Of the entire area, several sites were still contaminated by waste materials and petroleum. For zinc (Zn) contamination, high Zn concentrations were detected because waste materials were disposed in the entire area. For petroleum contamination, high total petroleum hydrocarbon (TPH) and hydrocarbon degrading microbe concentrations were observed at the depth of 7 m because the underground petroleum storage tank had previously been located at this site. Correlation results suggest that TPH (soil) concentration is still related with TPH (groundwater) concentration. The relationship is taken into account in the Spearman coefficient (α).

  4. Global assessment of nitrogen fertilizer: the SCOPE/IGBP nitrogen fertilizer rapid assessment project.

    PubMed

    Mosier, Arvin R; Syers, J Keith; Freney, John R

    2005-12-01

    Nitrogen (N) availability is a key role in food and fiber production. Providing plant-available N through synthetic fertilizer in the 20th and early 21st century has been a major contributor to the increased production required to feed and clothe the growing human population. To continue to meet the global demands and to minimize environmental problems, significant improvements are needed in the efficiency with which fertilizer N is utilized within production systems. There are still major uncertainties regarding the fate of fertilizer N added to agricultural soils and the potential for reducing losses to the environment. Enhancing the technical and economic efficiency of fertilizer N is seen to promote a favorable situation for both agricultural production and the environment, and this has provided much of the impetus for a new N fertilizer project. To address this important issue, a rapid assessment project on N fertilizer (NFRAP) was conducted by SCOPE (the Scientific Committee on Problems of the Environment) during late 2003 and early 2004. This was the first formal project of the International Nitrogen Initiative (INI). As part of this assessment, a successful international workshop was held in Kampala, Uganda on 12 -16 January, 2004. This workshop brought together scientists from around the world to assess the fate of synthetic fertilizer N in the context of overall N inputs to agricultural systems, with a view to enhancing the efficiency of N use and reducing negative impacts on the environment. Regionalization of the assessment highlighted the problems of too little N for crop production to meet the nutrient requirements of sub-Saharan Africa and the oversupply of N in the major rice-growing areas of China. The results of the assessment are presented in a book (SCOPE 65) which is now available to provide a basis for further discussions on N fertilizer.

  5. 75 FR 10500 - Environmental Assessment Prepared for Proposed Cape Wind Energy Project in Nantucket Sound, MA

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-08

    ... Minerals Management Service Environmental Assessment Prepared for Proposed Cape Wind Energy Project in... review and comment of an EA and Draft FONNSI prepared by MMS for the Cape Wind Energy Project proposed... Environmental Impact Statement (FEIS) for the Cape Wind Energy Project. The FEIS assessed the...

  6. 78 FR 15355 - Proposed Information Collection; Comment Request; Pilot Project Assessing Economic Benefits of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-11

    ...-213), NOAA's Marine Debris Division (MDD) is conducting a pilot project designed to assess the economic benefits to beach visitors of marine debris removal. The project will use a revealed preference... Project Assessing Economic Benefits of Marine Debris Removal AGENCY: National Oceanic and...

  7. 75 FR 23798 - Environmental Assessment Prepared for Proposed Cape Wind Energy Project in Nantucket Sound...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-05-04

    ... Minerals Management Service Environmental Assessment Prepared for Proposed Cape Wind Energy Project in...), announces the availability of an EA and FONNSI for the Cape Wind Energy Project proposed for Nantucket Sound... Impact Statement (FEIS) for the Cape Wind Energy Project. The FEIS assessed the physical, biological,...

  8. The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

    DOE PAGES

    Huntemann, Marcel; Ivanova, Natalia N.; Mavromatis, Konstantinos; Tripp, H. James; Paez-Espino, David; Palaniappan, Krishnaveni; Szeto, Ernest; Pillay, Manoj; Chen, I-Min A.; Pati, Amrita; et al

    2015-10-26

    The DOE-JGI Microbial Genome Annotation Pipeline performs structural and functional annotation of microbial genomes that are further included into the Integrated Microbial Genome comparative analysis system. MGAP is applied to assembled nucleotide sequence datasets that are provided via the IMG submission site. Dataset submission for annotation first requires project and associated metadata description in GOLD. The MGAP sequence data processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNA features, as well as CRISPR elements. In conclusion, structural annotation is followed by assignment of protein product names and functions.

  9. Integrative annotation of chromatin elements from ENCODE data

    PubMed Central

    Hoffman, Michael M.; Ernst, Jason; Wilder, Steven P.; Kundaje, Anshul; Harris, Robert S.; Libbrecht, Max; Giardine, Belinda; Ellenbogen, Paul M.; Bilmes, Jeffrey A.; Birney, Ewan; Hardison, Ross C.; Dunham, Ian; Kellis, Manolis; Noble, William Stafford

    2013-01-01

    The ENCODE Project has generated a wealth of experimental information mapping diverse chromatin properties in several human cell lines. Although each such data track is independently informative toward the annotation of regulatory elements, their interrelations contain much richer information for the systematic annotation of regulatory elements. To uncover these interrelations and to generate an interpretable summary of the massive datasets of the ENCODE Project, we apply unsupervised learning methodologies, converting dozens of chromatin datasets into discrete annotation maps of regulatory regions and other chromatin elements across the human genome. These methods rediscover and summarize diverse aspects of chromatin architecture, elucidate the interplay between chromatin activity and RNA transcription, and reveal that a large proportion of the genome lies in a quiescent state, even across multiple cell types. The resulting annotation of non-coding regulatory elements correlate strongly with mammalian evolutionary constraint, and provide an unbiased approach for evaluating metrics of evolutionary constraint in human. Lastly, we use the regulatory annotations to revisit previously uncharacterized disease-associated loci, resulting in focused, testable hypotheses through the lens of the chromatin landscape. PMID:23221638

  10. Objective-guided image annotation.

    PubMed

    Mao, Qi; Tsang, Ivor Wai-Hung; Gao, Shenghua

    2013-04-01

    Automatic image annotation, which is usually formulated as a multi-label classification problem, is one of the major tools used to enhance the semantic understanding of web images. Many multimedia applications (e.g., tag-based image retrieval) can greatly benefit from image annotation. However, the insufficient performance of image annotation methods prevents these applications from being practical. On the other hand, specific measures are usually designed to evaluate how well one annotation method performs for a specific objective or application, but most image annotation methods do not consider optimization of these measures, so that they are inevitably trapped into suboptimal performance of these objective-specific measures. To address this issue, we first summarize a variety of objective-guided performance measures under a unified representation. Our analysis reveals that macro-averaging measures are very sensitive to infrequent keywords, and hamming measure is easily affected by skewed distributions. We then propose a unified multi-label learning framework, which directly optimizes a variety of objective-specific measures of multi-label learning tasks. Specifically, we first present a multilayer hierarchical structure of learning hypotheses for multi-label problems based on which a variety of loss functions with respect to objective-guided measures are defined. And then, we formulate these loss functions as relaxed surrogate functions and optimize them by structural SVMs. According to the analysis of various measures and the high time complexity of optimizing micro-averaging measures, in this paper, we focus on example-based measures that are tailor-made for image annotation tasks but are seldom explored in the literature. Experiments show consistency with the formal analysis on two widely used multi-label datasets, and demonstrate the superior performance of our proposed method over state-of-the-art baseline methods in terms of example-based measures on four

  11. Environmental assessment: Kotzebue Wind Installation Project, Kotzebue, Alaska

    SciTech Connect

    1998-05-01

    The DOE is proposing to provide financial assistance to the Kotzebue Electric Association to expand its existing wind installation near Kotzebue, Alaska. Like many rural Alaska towns, Kotzebue uses diesel-powered generators to produce its electricity, the high cost of which is currently subsidized by the Alaska State government. In an effort to provide a cost effective and clean source of electricity, reduce dependence on diesel fuel, and reduce air pollutants, the DOE is proposing to fund an experimental wind installation to test commercially available wind turbines under Arctic conditions. The results would provide valuable information to other Alaska communities experiencing similar dependence on diesel-powered generators. The environmental assessment for the proposed wind installation assessed impacts to biological resources, land use, electromagnetic interference, coastal zone, air quality, cultural resources, and noise. It was determined that the project does not constitute a major Federal action significantly affecting the quality of the human environment. Therefore, the preparation of an environmental impact statement is not required, and DOE has issued a Finding of No Significant Impact.

  12. NREL Solar Radiation Resource Assessment Project: Status and outlook

    SciTech Connect

    Renne, D.; Riordan, C.; Maxwell, E.; Stoffel, T.; Marion, B.; Rymes, M.; Wilcox, S.; Myers, D.

    1992-05-01

    This report summarizes the activities and accomplishments of NREL's Solar Radiation Resource Assessment Project during fiscal year 1991. Currently, the primary focus of the SRRAP is to produce a 1961--1990 National Solar Radiation Data Base, providing hourly values of global horizontal, diffuse, and direct normal solar radiation at approximately 250 sites around the United States. Because these solar radiation quantities have been measured intermittently at only about 50 of these sites, models were developed and applied to the majority of the stations to provide estimates of these parameters. Although approximately 93% of the data base consists of modeled data this represents a significant improvement over the SOLMET/ERSATZ 1952--1975 data base. The magnitude and importance of this activity are such that the majority of SRRAP human and financial in many other activities, which are reported here. These include the continued maintenance of a solar radiation monitoring network in the southeast United States at six Historically Black Colleges and Universities (HBCU's), the transfer of solar radiation resource assessment technology through a variety of activities, participation in international programs, and the maintenance and operation of NREL's Solar Radiation Research Laboratory. 17 refs.

  13. The SKI repository performance assessment project Site-94

    SciTech Connect

    Andersson, J.; Dverstorp, B.; Sjoeblom, R.; Wingefors, S.

    1995-12-01

    SITE-94 is a research project conducted as a performance assessment of a hypothetical repository for spent nuclear fuel, but with real pre-excavation data from a real site. The geosphere, the engineered barriers and the processes for radionuclide release and transport comprise an integrated interdependent system, which is described by an influence diagram (PID) that reflects how different Features, Events or Processes (FEPs) inside the system interact. Site evaluation is used to determine information of transport paths in the geosphere and to deliver information on geosphere interaction with the engineered barriers. A three-dimensional geological structure model of the site as well as alternative conceptual models consistent with the existing hydrological field data, have been analyzed. Groundwater chemistry is evaluated and a model, fairly consistent with the flow model, for the origin of the different waters has been developed. The geological structure model is also used for analyzing the mechanical stability of the site. Several phenomena of relevance for copper corrosion in a repository environment have been investigated. For Reference Case conditions and regardless of flow variability, output is dominated by I-129, which, for a single canister, may give rise to drinking water well doses in the order of 10{sup -6}Sv/yr. Finally, it appears that the procedures involved in the development of influence diagrams may be a promising tool for quality assurance of performance assessments.

  14. The Luneburg Sustainable University Project in International Comparison: An Assessment against North American Peers

    ERIC Educational Resources Information Center

    Beringer, Almut

    2007-01-01

    Purpose: To assess the Luneburg Sustainable University Project (the Project) in a non-European international context; to relate the project scholarly approach to selected scholarly and practice-oriented North American sustainability in higher education (SHE) methods; to analyze project innovations against North American initiatives.…

  15. Environmental assessment of USAID housing projects in the Russian Federation

    SciTech Connect

    Loran, B.; Miller, C.

    1995-12-01

    Parsons was selected by the United States Agency for International Development (USAID) as the general contractor for construction management for the construction of 2,500 housing units within the Russian Federation. These housing units, to be occupied by Russian officers returning from the Baltic States, are under construction on 15 sites, selected from an initial list of 200, based on habitability, capability of successful final construction. Cost meeting USAID guidelines, and impacts on the environment. USAID fulfilled NEPA requirements by preparing, with assistance of Parsons Engineering Science, a Programmatic Environmental Assessment and 15 site specific Environmental Assessments for the project. The sites were scattered over the entire Russian Federation west of the Ural Mountains. The site offerors completed an environmental checklist covering a broad range of possible impacts. Significant environmental issues and concerns were further identified during scoping meetings held at the site locations. The most important issues discussed were: soil contamination; gaseous, liquid, and solid pollutants to which the site may be exposed; incompatible adjacent land uses; ready access to utilities and social services; and socioeconomic situation favorable to resettlement of Russian military officers. No major environmental issues or concerns were identified for the 15 selected sites. Certificates indicating the absence of chemical and radiological surface and subsurface contamination at the proposed sites were provided by the local environmental officers. Polynuclear aromatic hydrocarbons were found present at one of the sites considered in a preliminary selection, and later rejected due to the failure of contractual negotiations. The environmental assessments included mitigation and monitoring measures for construction and operation (occupancy) impacts.

  16. Environmental Assessment: geothermal direct heat project, Marlin, Texas

    SciTech Connect

    Not Available

    1980-08-01

    The Federal action addressed by this Environmental Assessment (EA) is joint funding the retrofitting of a heating and hot water system in a hospital at Marlin, Texas, with a geothermal preheat system. The project will be located within the existing hospital boiler room. One supply well was drilled in an existing adjacent parking lot. It was necessary to drill the well prior to completion of this environmental assessment in order to confirm the reservoir and to obtain fluids for analysis in order to assess the environmental effects of fluid disposal. Fluid from operation will be disposed of by discharging it directly into existing street drains, which will carry the fluid to Park Lake and eventually the Brazos River. Fluid disposal activities are regulated by the Texas Railroad Commission. The local geology is determined by past displacements in the East Texas Basin. Boundaries are marked by the Balcones and the Mexia-Talco fault systems. All important water-bearing formations are in the cretaceous sedimentary rocks and are slightly to highly saline. Geothermal fluids are produced from the Trinity Group; they range from approximately 3600 to 4000 ppM TDS. Temperatures are expected to be above 64/sup 0/C (147/sup 0/F). Surface water flows southeastward as a part of the Brazos River Basin. The nearest perennial stream is the Brazos River 5.6 km (3.5 miles) away, to which surface fluids will eventually discharge. Environmental impacts of construction were small because of the existing structures and paved areas. Construction run-off and geothermal flow-test fluid passed through a small pond in the city park, lowering its water quality, at least temporarily. Construction noise was not out of character with existing noises around the hospital.

  17. California Groundwater Ambient Monitoring and Assessment (GAMA) Program Priority Basin Project--shallow aquifer assessment

    USGS Publications Warehouse

    ,

    2013-01-01

    The California State Water Resources Control Board’s (SWRCB) GAMA Program is a comprehensive assessment of statewide groundwater quality in California. From 2004 to 2012, the GAMA Program’s Priority Basin Project focused on assessing groundwater resources used for public drinking-water supplies. More than 2,000 public-supply wells were sampled by U.S. Geological Survey (USGS) for this effort. Starting in 2012, the GAMA Priority Basin Project began an assessment of water resources in shallow aquifers in California. These shallow aquifers provide water for domestic and small community-supply wells, which are often drilled to shallower depths in the groundwater system than public-supply wells. Shallow aquifers are of interest because shallow groundwater may respond more quickly and be more susceptible to contamination from human activities at the land surface, than the deeper aquifers. The SWRCB’s GAMA Program was developed in response to the Groundwater Quality Monitoring Act of 2001 (Water Code sections 10780-10782.3): a public mandate to assess and monitor the quality of groundwater resources used for drinking-water supplies, and to increase the availability of information about groundwater quality to the public. The U.S. Geological Survey is the technical lead of the Priority Basin Project. Stewardship of California’s groundwater resources is a responsibility shared between well owners, communities, and the State. Participants and collaborators in the GAMA Program include Regional Water Quality Control Boards, Department of Water Resources, Department of Public Health, local and regional groundwater management entities, county and local water agencies, community groups, and private citizens. Well-owner participation in the GAMA Program is entirely voluntary.

  18. The Native Learner and Distance Education: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Confederation Coll. of Applied Arts and Technology, Thunder Bay (Ontario).

    This annotated bibliography consists of 76 entries dated 1975 through 1988, describing publications in the area of distance education and the Native learner. The bibliography represents one phase of a project entitled "Native Priorities for Distance Education," with the goal being the participation of Native peoples in the planning and…

  19. Program Evaluation in the Arts. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Wildemuth, Barbara M., Comp.; Eichinger, Debra S., Comp.

    This 56-item annotated bibliography gives teachers and administrators access to information on the evaluation of school fine arts programs. Based upon a computer search of the Educational Resources Information Center (ERIC) data base, it cites project reports, journal articles, and dissertations published from 1963 to 1976. Citations of elementary…

  20. Genome Annotation in a Community College Cell Biology Lab

    ERIC Educational Resources Information Center

    Beagley, C. Timothy

    2013-01-01

    The Biology Department at Salt Lake Community College has used the IMG-ACT toolbox to introduce a genome mapping and annotation exercise into the laboratory portion of its Cell Biology course. This project provides students with an authentic inquiry-based learning experience while introducing them to computational biology and contemporary learning…

  1. Job Creation in Rural Areas: A Select Annotated Bibliography.

    ERIC Educational Resources Information Center

    Pankratz, John

    1989-01-01

    This annotated bibliography is designed to assist rural leaders seeking ways to effectively structure successful job development projects in their communities. The 120 entries are listed in the main body alphabetically by author, and are grouped in the index into categories reflecting Thomas's "seven hallmarks of successful rural development": (1)…

  2. Adult Basic Education & Literacy, Media and Technology. An Annotated Bibliography

    ERIC Educational Resources Information Center

    Elliott, Claire

    2005-01-01

    This bibliography was compiled for The Centre for Literacy's 2005 Summer Institute: "Adult Basic Education & Literacy, Media and Technology." The references and annotations point to relevant research, project, strategy and evaluation reports that describe and analyze the current and future influences of changing technologies on…

  3. Collective dynamics of social annotation.

    PubMed

    Cattuto, Ciro; Barrat, Alain; Baldassarri, Andrea; Schehr, Gregory; Loreto, Vittorio

    2009-06-30

    The enormous increase of popularity and use of the worldwide web has led in the recent years to important changes in the ways people communicate. An interesting example of this fact is provided by the now very popular social annotation systems, through which users annotate resources (such as web pages or digital photographs) with keywords known as "tags." Understanding the rich emergent structures resulting from the uncoordinated actions of users calls for an interdisciplinary effort. In particular concepts borrowed from statistical physics, such as random walks (RWs), and complex networks theory, can effectively contribute to the mathematical modeling of social annotation systems. Here, we show that the process of social annotation can be seen as a collective but uncoordinated exploration of an underlying semantic space, pictured as a graph, through a series of RWs. This modeling framework reproduces several aspects, thus far unexplained, of social annotation, among which are the peculiar growth of the size of the vocabulary used by the community and its complex network structure that represents an externalization of semantic structures grounded in cognition and that are typically hard to access. PMID:19506244

  4. How to scientifically assess a restoration project: a case study

    NASA Astrophysics Data System (ADS)

    Alvarez de Buergo, M.; Fort, R.; Freire, D. M.; Lopez-Arce, P.; Vazquez-Calvo, C.

    2012-04-01

    Commonly, it is said that there is lack of communication among scientists, conservators, restorers, project managers and architects. But sometimes this communication flows, and we can find enormous benefits from and for all the participating agents. This is the case we present in this work, in which technical agents in charge of the restoration of a building, asked for some scientific advice to perform the restoration of a heritage building. The results were successful and fantastic for both of them, in terms of one part asking for consultation and the other answering to the demands and resolving real problems. This is the case of a marvellous Renaissance building (Medinaceli Dukes palace, 15th-16th centuries) in the central area of Spain (Cogolludo, Guadalajara). Focused on the restoration project, we were asked for consultancy on how to solve matters like the assessment of the already fixed in project cleaning method for the stone façades, the efficacy and durability methods for some conservation products to be applied, the presence or not of a patina on the stone; the viability of using some restoration mortars, and the origin of some efflorescences that came out just after placed in the building a restoration rendering mortar. Responses to these matters were answered by performing tests both in the lab and on site in the building. The efficiency and effects on stone of the blasting cleaning method was assessed by first analysing the nature and thickness of the surface deposits to be removed (SEM-EDS analyses); secondly, roughness and colour measurements were performed, and thirdly, SEM-EDS analyses were carried out again to determine whether the cleaning method was able to remove part of the surface deposits, completely, or even part of the stone substrate. Some conservation products were tested on stone specimens, both their efficacy and their durability, concluding that it was better not to apply any of them. A patina was found on the stone façade under SEM

  5. Documentation assessment, Project C-018H, 200-E area effluent treatment facility

    SciTech Connect

    Peres, M.W.; Connor, M.D.; Mertelendy, J.I.

    1994-12-21

    Project C-018H is one of the fourteen subprojects to the Hanford Environmental Compliance (HEC) Project. Project C-018H provides treatment and disposal for the 242-A Evaporator and PUREX plant process condensate waste streams. This project used the Integrated Management Team (IMT) approach proposed by RL. The IMT approach included all affected organizations on the project team to coordinate and execute all required project tasks, while striving to integrate and satisfy all technical, operational, functional, and organizational objectives. The HEC Projects were initiated in 1989. Project C-018H began in early 1990, with completion of construction currently targeted for mid-1995. This assessment was performed to evaluate the effectiveness of the management control on design documents and quality assurance records developed and submitted for processing, use, and retention for the Project. The assessment focused primarily on the overall adequacy and quality of the design documentation currently being submitted to the project document control function.

  6. Overview of the Texas Source Water Assessment Project

    USGS Publications Warehouse

    Ulery, Randy L.

    2000-01-01

    The 1996 Amendments to the Safe Drinking Water Act require, for the first time, that each state prepare a source water assessment for all PWS. Previously, Federal regulations focused on sampling and enforcement with emphasis on the quality of delivered water. These Amendments emphasize the importance of protecting the source water. States are required to determine the drinking-water source, the origin of contaminants monitored or the potential contaminants to be monitored, and the intrinsic susceptibility of the source water. Under the amendments to the Act, States must create SWAP Programs. The programs must include an individual source water assessment for each public water system regulated by the State. These assessments will determine whether an individual drinking water source is susceptible to contamination. During 1997?99, TNRCC and USGS staff met as subject-matter working groups to develop an approach to conducting Source Water Susceptibility Assessments (SWSA) and a draft workplan. The draft workplan was then presented to and reviewed by various stakeholder and technical advisory groups. Comments and suggestions from these groups were considered, and a final workplan was produced and presented to the EPA. After EPA approval, work formally began on the Texas SWAP Project. The project has an expected completion date of September 2002. At that time, initial SWSA of all Texas public water supplies should be complete. Ground-water supplies can be considered susceptible if a possible source of contamination (PSOC) exists in the contributing area for the public-supply well field or spring, the contaminant travel time to the well field or spring is short, and the soil zone, vadose zone, and aquifer-matrix materials are unlikely to adequately attenuate the contaminants associated with the PSOC. In addition, particular types of land use/cover within the contributing area may cause the supply to be deemed more susceptible to contamination. Finally, detection of

  7. Pulsed Photonuclear Assessment (PPA) Technique: CY-05 Project Summary Report

    SciTech Connect

    J.L. Jones; B.D. Bennett; K.J. Haskell; J.T. Johnson; D.R. Norman; J.W. Sterbentz; R.W. Watson; S.M. Watson; W.Y. Yoon; J.M. Zabriskie; C.E. Moss; K.L. Folkman; C.C. O'Neil; A.W. Hunt; R.J. Spaulding

    2005-12-01

    Idaho National Laboratory, along with Idaho State University’s Idaho Accelerator Center and Los Alamos National Laboratory, is developing an electron accelerator-based, photonuclear inspection technology, called the Pulsed Photonuclear Assessment (PPA) system, for the detection of nuclear material concealed within air-, rail-, and, primarily, maritime-cargo transportation containers. This report summarizes the advances and progress of the system’s development in 2005. The contents of this report include an overview of the prototype inspection system, selected Receiver-Operator-Characteristic curves for system detection performance characterization, a description of the approach used to integrate the three major detection components of the PPA inspection system, highlights of the gray-scale density mapping technique being used for significant shield material detection, and higher electron beam energy detection results to support an evaluation for an optimal interrogating beam energy. This project is supported by the Department of Homeland Security Office of Research and Development and, more recently, the Domestic Nuclear Detection Office.

  8. Environmental Assessment -- Test Area North pool stabilization project update

    SciTech Connect

    1997-08-01

    The purpose of this Environmental Assessment (EA) is to update the ``Test Area North Pool Stabilization Project`` EA (DOE/EA-1050) and finding of no significant impact (FONSI) issued May 6, 1996. This update analyzes the environmental and health impacts of a drying process for the Three Mile Island (TMI) nuclear reactor core debris canisters now stored underwater in a facility on the Idaho National Engineering and Environmental Laboratory (INEEL). A drying process was analyzed in the predecision versions of the EA released in 1995 but that particular process was determined to be ineffective and dropped from the EA/FONSI issued May 6, 1996. A new drying process was subsequently developed and is analyzed in Section 2.1.2 of this document. As did the 1996 EA, this update analyzes the environmental and health impacts of removing various radioactive materials from underwater storage, dewatering these materials, constructing a new interim dry storage facility, and transporting and placing the materials into the new facility. Also, as did the 1996 EA, this EA analyzes the removal, treatment and disposal of water from the pool, and placement of the facility into a safe, standby condition. The entire action would take place within the boundaries of the INEEL. The materials are currently stored underwater in the Test Area North (TAN) building 607 pool, the new interim dry storage facility would be constructed at the Idaho Chemical Processing Plant (ICPP) which is about 25 miles south of TAN.

  9. Draft environmental assessment -- Test Area North pool stabilization project update

    SciTech Connect

    1997-06-01

    The purpose of this Environmental Assessment (EA) is to update the ``Test Area North Pool Stabilization Project`` EA (DOE/EA-1050) and finding of no significant impact (FONSI) issued May 6, 1996. This update analyzes the environmental and health impacts of a drying process for the Three Mile Island (TMI) nuclear reactor core debris canisters now stored underwater in a facility on the Idaho National Engineering and Environmental Laboratory (INEEL). A drying process was analyzed in the predecision versions of the EA released in 1995 but that particular process was determined to be ineffective and dropped form the Ea/FONSI issued May 6, 1996. The origin and nature of the TMI core debris and the proposed drying process are described and analyzed in detail in this EA. As did the 1996 EA, this update analyzes the environmental and health impacts of removing various radioactive materials from underwater storage, dewatering these materials, constructing a new interim dry storage facility, and transporting and placing the materials into the new facility. Also, as did the 1996 EA, this EA analyzes the removal, treatment and disposal of water from the pool, and placement of the facility into a safe, standby condition. The entire action would take place within the boundaries of the INEEL. The materials are currently stored underwater in the Test Area North (TAN) building 607 pool, the new interim dry storage facility would be constructed at the Idaho Chemical Processing Plant (ICPP) which is about 25 miles south of TAN.

  10. Human Variome Project Quality Assessment Criteria for Variation Databases.

    PubMed

    Vihinen, Mauno; Hancock, John M; Maglott, Donna R; Landrum, Melissa J; Schaafsma, Gerard C P; Taschner, Peter

    2016-06-01

    Numerous databases containing information about DNA, RNA, and protein variations are available. Gene-specific variant databases (locus-specific variation databases, LSDBs) are typically curated and maintained for single genes or groups of genes for a certain disease(s). These databases are widely considered as the most reliable information source for a particular gene/protein/disease, but it should also be made clear they may have widely varying contents, infrastructure, and quality. Quality is very important to evaluate because these databases may affect health decision-making, research, and clinical practice. The Human Variome Project (HVP) established a Working Group for Variant Database Quality Assessment. The basic principle was to develop a simple system that nevertheless provides a good overview of the quality of a database. The HVP quality evaluation criteria that resulted are divided into four main components: data quality, technical quality, accessibility, and timeliness. This report elaborates on the developed quality criteria and how implementation of the quality scheme can be achieved. Examples are provided for the current status of the quality items in two different databases, BTKbase, an LSDB, and ClinVar, a central archive of submissions about variants and their clinical significance.

  11. Research in the Virginia Community College System; An Annotated Bibliography, Topical Listing, and College Listing of Research Projects Conducted at Virginia Community Colleges from July 16, 1974 through May 30, 1975.

    ERIC Educational Resources Information Center

    Kelly, Sarah J.; Jackson, Shirley C.

    This bibliography lists the reports of research studies conducted at the 23 colleges in the Virginia Community College System during the 1974-75 academic year. Over 124 studies are divided into three sections. The first section provides annotations for 61 of the studies, selected on the basis of anticipated interest, quality of study design,…

  12. Assessing corporate project impacts in changeable contexts: A human rights perspective

    SciTech Connect

    Salcito, Kendyl; Singer, Burton H.; Krieger, Gary R.; Weiss, Mitchell G.; Wielga, Mark; Utzinger, Jürg

    2014-07-01

    Project-level impact assessment was originally conceived as a snapshot taken in advance of project implementation, contrasting current conditions with a likely future scenario involving a variety of predicted impacts. Current best practice guidance has encouraged a shift towards longitudinal assessments from the pre-project stage through the implementation and operating phases. Experience and study show, however, that assessment of infrastructure-intensive projects rarely endures past the project's construction phase. Negative consequences for environmental, social and health outcomes have been documented. Such consequences clarify the pressing need for longitudinal assessment in each of these domains, with human rights impact assessment (HRIA) as an umbrella over, and critical augmentation of, environmental, social and health assessments. Project impacts on human rights are more closely linked to political, economic and other factors beyond immediate effects of a company's policy and action throughout the project lifecycle. Delineating these processes requires an adequate framework, with strategies for collecting longitudinal data, protocols that provide core information for impact assessment and guidance for adaptive mitigation strategies as project-related effects change over time. This article presents general principles for the design and implementation of sustained, longitudinal HRIA, based on experience assessing and responding to human rights impact in a uranium mining project in Malawi. The case study demonstrates the value of longitudinal assessment both for limiting corporate risk and improving human welfare. - Graphical abstract: Assessing changes in human rights condition as affected by both project and context, over time. - Highlights: • Corporate capital projects affect human rights in myriad ways. • Ongoing, longitudinal impact assessment techniques are needed. • We present an approach for conducting longitudinal human rights impact assessment

  13. The Challenge of Assessing Project-Based Learning

    ERIC Educational Resources Information Center

    Boss, Suzie

    2012-01-01

    For their ambitious project, called America at War, high school juniors at Da Vinci Charter Academy in the Davis (California) Joint Unified School District didn't just study history. They became historians. Their project offers compelling evidence of what students can accomplish through project-based learning (PBL), an instructional approach that…

  14. LNG annotated bibliography

    SciTech Connect

    Bomelburg, H.J.; Counts, C.A.; Cowan, C.E.; Davis, W.E.; DeSteese, J.G.; Pelto, P.J.

    1982-09-01

    This document updates the bibliography published in Liquefied Gaseous Fuels Safety and Environmental Control Assessment Program: third status report (PNL-4172) and is a complete listing of literature reviewed and reported under the LNG Technical Surveillance Task. The bibliography is organized alphabetically by author.

  15. Preserving sequence annotations across reference sequences

    PubMed Central

    2014-01-01

    Background Matching and comparing sequence annotations of different reference sequences is vital to genomics research, yet many annotation formats do not specify the reference sequence types or versions used. This makes the integration of annotations from different sources difficult and error prone. Results As part of our effort to create linked data for interoperable sequence annotations, we present an RDF data model for sequence annotation using the ontological framework established by the OBO Foundry ontologies and the Basic Formal Ontology (BFO). We defined reference sequences as the common domain of integration for sequence annotations, and identified three semantic relationships between sequence annotations. In doing so, we created the Reference Sequence Annotation to compensate for gaps in the SO and in its mapping to BFO, particularly for annotations that refer to versions of consensus reference sequences. Moreover, we present three integration models for sequence annotations using different reference assemblies. Conclusions We demonstrated a working example of a sequence annotation instance, and how this instance can be linked to other annotations on different reference sequences. Sequence annotations in this format are semantically rich and can be integrated easily with different assemblies. We also identify other challenges of modeling reference sequences with the BFO. PMID:25093075

  16. Annotations of Mexican bullfighting videos for semantic index

    NASA Astrophysics Data System (ADS)

    Montoya Obeso, Abraham; Oropesa Morales, Lester Arturo; Fernando Vázquez, Luis; Cocolán Almeda, Sara Ivonne; Stoian, Andrei; García Vázquez, Mireya Saraí; Zamudio Fuentes, Luis Miguel; Montiel Perez, Jesús Yalja; de la O Torres, Saul; Ramírez Acosta, Alejandro Alvaro

    2015-09-01

    The video annotation is important for web indexing and browsing systems. Indeed, in order to evaluate the performance of video query and mining techniques, databases with concept annotations are required. Therefore, it is necessary generate a database with a semantic indexing that represents the digital content of the Mexican bullfighting atmosphere. This paper proposes a scheme to make complex annotations in a video in the frame of multimedia search engine project. Each video is partitioned using our segmentation algorithm that creates shots of different length and different number of frames. In order to make complex annotations about the video, we use ELAN software. The annotations are done in two steps: First, we take note about the whole content in each shot. Second, we describe the actions as parameters of the camera like direction, position and deepness. As a consequence, we obtain a more complete descriptor of every action. In both cases we use the concepts of the TRECVid 2014 dataset. We also propose new concepts. This methodology allows to generate a database with the necessary information to create descriptors and algorithms capable to detect actions to automatically index and classify new bullfighting multimedia content.

  17. Incorporating Feature-Based Annotations into Automatically Generated Knowledge Representations

    NASA Astrophysics Data System (ADS)

    Lumb, L. I.; Lederman, J. I.; Aldridge, K. D.

    2006-12-01

    Earth Science Markup Language (ESML) is efficient and effective in representing scientific data in an XML- based formalism. However, features of the data being represented are not accounted for in ESML. Such features might derive from events (e.g., a gap in data collection due to instrument servicing), identifications (e.g., a scientifically interesting area/volume in an image), or some other source. In order to account for features in an ESML context, we consider them from the perspective of annotation, i.e., the addition of information to existing documents without changing the originals. Although it is possible to extend ESML to incorporate feature-based annotations internally (e.g., by extending the XML schema for ESML), there are a number of complicating factors that we identify. Rather than pursuing the ESML-extension approach, we focus on an external representation for feature-based annotations via XML Pointer Language (XPointer). In previous work (Lumb &Aldridge, HPCS 2006, IEEE, doi:10.1109/HPCS.2006.26), we have shown that it is possible to extract relationships from ESML-based representations, and capture the results in the Resource Description Format (RDF). Thus we explore and report on this same requirement for XPointer-based annotations of ESML representations. As in our past efforts, the Global Geodynamics Project (GGP) allows us to illustrate with a real-world example this approach for introducing annotations into automatically generated knowledge representations.

  18. Towards comprehensive syntactic and semantic annotations of the clinical narrative

    PubMed Central

    Albright, Daniel; Lanfranchi, Arrick; Fredriksen, Anwen; Styler, William F; Warner, Colin; Hwang, Jena D; Choi, Jinho D; Dligach, Dmitriy; Nielsen, Rodney D; Martin, James; Ward, Wayne; Palmer, Martha; Savova, Guergana K

    2013-01-01

    Objective To create annotated clinical narratives with layers of syntactic and semantic labels to facilitate advances in clinical natural language processing (NLP). To develop NLP algorithms and open source components. Methods Manual annotation of a clinical narrative corpus of 127 606 tokens following the Treebank schema for syntactic information, PropBank schema for predicate-argument structures, and the Unified Medical Language System (UMLS) schema for semantic information. NLP components were developed. Results The final corpus consists of 13 091 sentences containing 1772 distinct predicate lemmas. Of the 766 newly created PropBank frames, 74 are verbs. There are 28 539 named entity (NE) annotations spread over 15 UMLS semantic groups, one UMLS semantic type, and the Person semantic category. The most frequent annotations belong to the UMLS semantic groups of Procedures (15.71%), Disorders (14.74%), Concepts and Ideas (15.10%), Anatomy (12.80%), Chemicals and Drugs (7.49%), and the UMLS semantic type of Sign or Symptom (12.46%). Inter-annotator agreement results: Treebank (0.926), PropBank (0.891–0.931), NE (0.697–0.750). The part-of-speech tagger, constituency parser, dependency parser, and semantic role labeler are built from the corpus and released open source. A significant limitation uncovered by this project is the need for the NLP community to develop a widely agreed-upon schema for the annotation of clinical concepts and their relations. Conclusions This project takes a foundational step towards bringing the field of clinical NLP up to par with NLP in the general domain. The corpus creation and NLP components provide a resource for research and application development that would have been previously impossible. PMID:23355458

  19. Documents of the JPL Photovoltaics Program Analysis and Integration Center: An annotated bibliography

    NASA Technical Reports Server (NTRS)

    Pearson, A. M.

    1985-01-01

    A bibliography of internal and external documents produced by the Jet Propulsion Laboratory, based on the work performed by the Photovoltaics Program Analysis and Integration Center, is presented with annotations. As shown in the Table of Contents, the bibliography is divided into three subject areas: (1) Assessments, (2) Methdological Studies, and (3) Supporting Studies. Annotated abstracts are presented for 20 papers.

  20. Infant Feeding: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Crowhurst, Christine Marie, Comp.; Kumer, Bonnie Lee, Comp.

    Intended for parents, health professionals and allied health workers, and others involved in caring for infants and young children, this annotated bibliography brings together in one selective listing a review of over 700 current publications related to infant feeding. Reflecting current knowledge in infant feeding, the bibliography has as its…

  1. English Language Learners: Annotated Bibliography

    ERIC Educational Resources Information Center

    Hector-Mason, Anestine; Bardack, Sarah

    2010-01-01

    This annotated bibliography represents a first step toward compiling a comprehensive overview of current research on issues related to English language learners (ELLs). It is intended to be a resource for researchers, policymakers, administrators, and educators who are engaged in efforts to bridge the divide between research, policy, and practice…

  2. Appalachian Women. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Hamm, Mary Margo

    This bibliography compiles annotations of 178 books, journal articles, ERIC documents, and dissertations on Appalachian women and their social, cultural, and economic environment. Entries were published 1966-93 and are listed in the following categories: (1) authors and literary criticism; (2) bibliographies and resource guides; (3) economics,…

  3. Radiocarbon Dating: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Fortine, Suellen

    This selective annotated bibliography covers various sources of information on the radiocarbon dating method, including journal articles, conference proceedings, and reports, reflecting the most important and useful sources of the last 25 years. The bibliography is divided into five parts--general background on radiocarbon, radiocarbon dating,…

  4. Hispanic Heritage. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Denver Univ., CO. School of Education.

    This annotated bibliography of a wide range of materials for the social studies teacher is concerned with the Hispano heritage. The sections are introduced by a brief description. The sections are: 1) general materials, 2) the land and the people, 3) the European background, 4) Spain's colonial system, 5) the Spanish borderlands, 6) the Anglo…

  5. Rural Education: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Massey, Sara

    The 120-item annotated bibliography was compiled to facilitate the development of a recently approved course entitled "Topics in Rural Education" at the University of Maine at Machias. Although the dates range from 1964 to 1982, most of the materials were prepared in the 1970s and 1980s. The interrelatedness of the issues makes categorization…

  6. Workforce Reductions. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Hickok, Thomas A.; Hickok, Thomas A.

    This report, which is based on a review of practitioner-oriented sources and scholarly journals, uses a three-part framework to organize annotated bibliographies that, together, list a total of 104 sources that provide the following three perspectives on work force reduction issues: organizational, organizational-individual relationship, and…

  7. Vietnamese Amerasians: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Johnson, Mark C.; And Others

    This annotated bibliography on Vietnamese Amerasians includes primary and secondary sources as well as reviews of three documentary films. Sources were selected in order to provide an overview of the historical and political context of Amerasian resettlement and a review of the scant available research on coping and adaptation with this…

  8. Instructional Materials Centers; Annotated Bibliography.

    ERIC Educational Resources Information Center

    Poli, Rosario, Comp.

    An annotated bibliography lists 74 articles and reports on instructional materials centers (IMC) which appeared from 1967-70. The articles deal with such topics as the purposes of an IMC, guidelines for setting up an IMC, and the relationship of an IMC to technology. Most articles deal with use of an IMC on an elementary or secondary level, but…

  9. Nikos Kazantzakis: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Qiu, Kui

    This research paper consists of an annotated bibliography about Nikos Kazantzakis, one of the major modern Greek writers and author of "The Last Temptation of Christ,""Zorba the Greek," and many other works. Because of Kazantzakis' position in world literature there are many critical works about him; however, bibliographical control of these works…

  10. An Annotated Bibliography for Art.

    ERIC Educational Resources Information Center

    Minnesota State Dept. of Education, St. Paul. Div. of Instruction.

    The annotated bibliography presents approximately 450 references about art for elementary, secondary, and professional levels. It is presented in three sections. Section one identifies 19 resources about art from a professional or teaching perspective. Included are books explaining how to teach various techniques to students of beginning or…

  11. Annotated Bibliography on Humanistic Education

    ERIC Educational Resources Information Center

    Ganung, Cynthia

    1975-01-01

    Part I of this annotated bibliography deals with books and articles on such topics as achievement motivation, process education, transactional analysis, discipline without punishment, role-playing, interpersonal skills, self-acceptance, moral education, self-awareness, values clarification, and non-verbal communication. Part II focuses on…

  12. MSDAC Resource Library Annotated Bibliography.

    ERIC Educational Resources Information Center

    Watson, Cristel; And Others

    This annotated bibliography lists books, films, filmstrips, recordings, and booklets on sex equity. Entries are arranged according to the following topics: career resources, curriculum resources, management, sex equity, sex roles, women's studies, student activities, and sex-fair fiction. Included in each entry are name of author, editor or…

  13. Multicultural Education. An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Narang, H. L.

    This annotated bibliography contains references to books, journal articles, ERIC documents, doctoral dissertations, and audio-visual materials on the subject of multicultural education. Topics include integrating multiculturalism in school subjects, prejudice and discrimination, intercultural communication, ethnic identity and ethnic bias.…

  14. Systems Theory and Communication. Annotated Bibliography.

    ERIC Educational Resources Information Center

    Covington, William G., Jr.

    This annotated bibliography presents annotations of 31 books and journal articles dealing with systems theory and its relation to organizational communication, marketing, information theory, and cybernetics. Materials were published between 1963 and 1992 and are listed alphabetically by author. (RS)

  15. Environmental assessment -- Proposed neutrino beams at the Main Injector project

    SciTech Connect

    1997-12-01

    The US Department of Energy (DOE) proposes to build a beamline on the Fermi National Accelerator Laboratory (Fermilab) site to accommodate an experimental research program in neutrino physics. The proposed action, called Neutrino Beams at the Main Injector (NuMI), is to design, construct, operate and decommission a facility for producing and studying a high flux beam of neutrinos in the energy range of 1 to 40 GeV (1 GeV is one billion or 10{sup 9} electron volts). The proposed facility would initially be dedicated to two experiments, COSMOS (Cosmologically Significant Mass Oscillations) and MINOS (Main Injector Neutrino Oscillation Search). The neutrino beam would pass underground from Fermilab to northern Minnesota. A tunnel would not be built in this intervening region because the neutrinos easily pass through the earth, not interacting, similar to the way that light passes through a pane of glass. The beam is pointed towards the MINOS detector in the Soudan Underground Laboratory in Minnesota. Thus, the proposed project also includes construction, operation and decommissioning of the facility located in the Soudan Underground Laboratory in Minnesota that houses this MINOS detector. This environmental assessment (EA) has been prepared by the US Department of Energy (DOE) in accordance with the DOE`s National Environmental Policy Act (NEPA) Implementing Procedures (10 CFR 1021). This EA documents DOE`s evaluation of potential environmental impacts associated with the proposed construction and operation of NuMI at Fermilab and its far detector facility located in the Soudan Underground Laboratory in Minnesota. Any future use of the facilities on the Fermilab site would require the administrative approval of the Director of Fermilab and would undergo a separate NEPA review. Fermilab is a Federal high-energy physics research laboratory in Batavia, Illinois operated on behalf of the DOE by Universities Research Association, Inc.

  16. Cultural competence models in nursing: a selected annotated bibliography.

    PubMed

    Shen, Zuwang

    2004-10-01

    Since the early 1990s, along with a phenomenal growth of nursing literature published on cultural competence, an array of cultural competence and cultural assessment models has been developed. This annotated bibliography provides bibliographic entries to books, book chapters, and journal articles that deal with the construction, development, or conceptualization of cultural competence and cultural assessment models. It also includes entries to books dealing with cultural assessment guides.

  17. MaGe: a microbial genome annotation system supported by synteny results.

    PubMed

    Vallenet, David; Labarre, Laurent; Rouy, Zoé; Barbe, Valérie; Bocs, Stéphanie; Cruveiller, Stéphane; Lajus, Aurélie; Pascal, Géraldine; Scarpelli, Claude; Médigue, Claudine

    2006-01-01

    Magnifying Genomes (MaGe) is a microbial genome annotation system based on a relational database containing information on bacterial genomes, as well as a web interface to achieve genome annotation projects. Our system allows one to initiate the annotation of a genome at the early stage of the finishing phase. MaGe's main features are (i) integration of annotation data from bacterial genomes enhanced by a gene coding re-annotation process using accurate gene models, (ii) integration of results obtained with a wide range of bioinformatics methods, among which exploration of gene context by searching for conserved synteny and reconstruction of metabolic pathways, (iii) an advanced web interface allowing multiple users to refine the automatic assignment of gene product functions. MaGe is also linked to numerous well-known biological databases and systems. Our system has been thoroughly tested during the annotation of complete bacterial genomes (Acinetobacter baylyi ADP1, Pseudoalteromonas haloplanktis, Frankia alni) and is currently used in the context of several new microbial genome annotation projects. In addition, MaGe allows for annotation curation and exploration of already published genomes from various genera (e.g. Yersinia, Bacillus and Neisseria). MaGe can be accessed at http://www.genoscope.cns.fr/agc/mage. PMID:16407324

  18. 76 FR 64991 - Environmental Assessment for the I-395 Air Rights Project

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-19

    ... Federal Highway Administration Environmental Assessment for the I-395 Air Rights Project AGENCY: Federal... Department of Transportation are announcing the availability for public review of the Environmental Assessment (EA) prepared for the I-395 Air Rights Projects in conjunction with the District Department...

  19. 75 FR 7029 - Notice of Availability of the Final Environmental Assessment for Solar Roof Project

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-16

    ... Geological Survey Notice of Availability of the Final Environmental Assessment for Solar Roof Project AGENCY..., the US Geological Survey (USGS) has prepared a Final Environmental Assessment for the Solar Roof... for the Solar Roof Project should immediately contact the USGS S.O. Conte Anadromous Fish...

  20. Lessons Learned from Net Zero Energy Assessments and Renewable Energy Projects at Military Installations

    SciTech Connect

    Callahan, M.; Anderson, K.; Booth, S.; Katz, J.; Tetreault, T.

    2011-09-01

    Report highlights the increase in resources, project speed, and scale that is required to achieve the U.S. Department of Defense (DoD) energy efficiency and renewable energy goals and summarizes the net zero energy installation assessment (NZEI) process and the lessons learned from NZEI assessments and large-scale renewable energy projects implementations at DoD installations.

  1. A Case Study of Teacher Learning in an Assessment for Learning Project in Hong Kong

    ERIC Educational Resources Information Center

    Tang, Sylvia Yee Fan; Leung, Pamela Pui Wan; Chow, Alice Wai Kwan; Wong, Ping Man

    2010-01-01

    Changes in assessment practices in the direction of assessment for learning (AfL) can be a powerful force to enhance student learning. This article presents a case study of teacher learning in an AfL project in Hong Kong. In the Project, AfL strategies were adopted in Chinese Language and English Language classrooms at the junior secondary level.…

  2. Centralisation of Assessment: Meeting the Challenges of Multi-Year Team Projects in Information Systems Education

    ERIC Educational Resources Information Center

    Cooper, Grahame; Heinze, Aleksej

    2007-01-01

    This paper focuses on the difficulties of assessing multi-year team projects, in which a team of students drawn from all three years of a full-time degree course works on a problem with and for a real-life organization. Although potential solutions to the problem of assessing team projects may be context-dependent, we believe that discussing these…

  3. Project ADAPT: A Program to Assess Depression and Provide Proactive Treatment in Rural Areas

    ERIC Educational Resources Information Center

    Luptak, Marilyn; Kaas, Merrie J.; Artz, Margaret; McCarthy, Teresa

    2008-01-01

    Purpose: We describe and evaluate a project designed to pilot test an evidence-based clinical intervention for assessing and treating depression in older adults in rural primary care clinics. Project ADAPT--Assuring Depression Assessment and Proactive Treatment--utilized existing primary care resources to overcome barriers to sustainability…

  4. Augusta Newsprint: Paper Mill Pursues Five Projects Following Plant-Wide Energy Efficiency Assessment

    SciTech Connect

    Not Available

    2003-07-01

    Augusta Newsprint undertook a plant-wide energy efficiency assessment of its Augusta, Georgia, plant in 2001. The assessment helped the company decide to implement five energy efficiency projects. Four of the five projects will save the company 11,000 MWh of electrical energy (about$369,000) each year. The remaining project will produce more than$300,000 annually, from sale of the byproduct turpentine. The largest annual savings,$881,000, will come from eliminating Kraft pulp by using better process control. All of the projects could be applied to other paper mills and most of the projects could be applied in other industries.

  5. New Perspectives on Evaluating Museum Environments: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Wolf, Robert L.; And Others

    This annotated bibliography has been compiled to aid museum staff members as they develop and implement naturalistic evaluations of museum programs and practices. Naturalistic evaluation is a recent assessment perspective which is concerned more with interpretation than judgment. It is characterized by concern with spontaneous activities rather…

  6. An Annotated Bibliography on the Severely and Profoundly Mentally Retarded.

    ERIC Educational Resources Information Center

    Cass, Michael, Comp.; Schilit, Jeffrey, Comp.

    Presented is an annotated bibliography with approximately 250 entries relating to the severely and profoundly retarded. Citations are listed alphabetically by author under the following categories: assessments, measurements, evaluations; associations; attending behavior; behavior modification; books; classical conditioning; cognitive development;…

  7. Resources for Exceptional Adult Education: An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Beltran, Alejandro C.; And Others

    This annotated bibliography describes materials that can be helpful to adult educators working with exceptional adults. The bibliography includes 186 citations of resource materials, assessment materials, training guides, curriculum guides, research findings, films, and general information. The opening section consists of citations of general…

  8. Iterative performance assessments as a regulatory tool for evaluating repository safety: How experiences from SKI Project-90 were used in formulating the new performance assessment project SITE-94

    SciTech Connect

    Andersson, J.

    1993-12-31

    The Swedish Nuclear Power Inspectorate, SKI, regulatory research program has to prepare for the process of licensing a repository for spent nuclear fuel, by building up the necessary knowledge and review capacity. SKIs main strategy for meeting this demand is to develop an independent performance assessment capability. SKIs first own performance assessment project, Project-90, was completed in 1991 and is now followed by a new project, SITE-94. SITE-94 is based on conclusions reached within Project-90. An independent review of Project-90, carried out by a NEA team of experts, has also contributed to the formation of the project. Another important reason for the project is that the implementing organization in Sweden, SKB, has proposed to submit an application to start detailed investigation of a repository candidate site around 1997. SITE-94 is a performance assessment of a hypothetical repository at a real site. The main objective of the project is to determine how site specific data should be assimilated into the performance assessment process, and to evaluate how uncertainties inherent in site characterization will influence performance assessment results. This will be addressed by exploring multiple interpretations, conceptual models, and parameters consistent with the site data. The site evaluation will strive for consistency between geological, hydrological, rock mechanical, and geochemical descriptions. Other important elements of SITE-94 are the development of a practical and defensible methodology for defining, constructing and analyzing scenarios, the development of approaches for treatment of uncertainties, evaluation of canister integrity, and the development and application of an appropriate quality assurance plan for performance assessments.

  9. ANNOTATED BIBLIOGRAPHY ON CREATIVITY AND GIFTEDNESS.

    ERIC Educational Resources Information Center

    GOWAN, JOHN CURTIS

    THIS ANNOTATED BIBLIOGRAPHY REPRESENTS A SAMPLING OF PUBLISHED WRITING ON CREATIVITY AND GIFTED CHILDREN SINCE 1960. THE LIST WAS COMPILED FOR EDUCATIONAL RESEARCHERS. IN A FEW INSTANCES THE ANNOTATIONS HAVE BEEN MODIFIED OR ABRIDGED FROM THOSE FOUND IN "PSYCHOLOGICAL ABSTRACTS" OR OTHER JOURNAL ABSTRACTS. SOME OF THE ANNOTATIONS HAVE PREVIOUSLY…

  10. Alcohol Education Materials; An Annotated Bibliography.

    ERIC Educational Resources Information Center

    Milgram, Gail Gleason

    This 873-item annotated bibliography cites books, pamphlets, leaflets, and other materials produced for education about alcohol from 1950 to May 1973. The major part of each annotation is a brief summary of the contents. The annotation also contains a statement of orientation or type of presentation and evaluative comments. Each item is classified…

  11. Annotation and Classification of Argumentative Writing Revisions

    ERIC Educational Resources Information Center

    Zhang, Fan; Litman, Diane

    2015-01-01

    This paper explores the annotation and classification of students' revision behaviors in argumentative writing. A sentence-level revision schema is proposed to capture why and how students make revisions. Based on the proposed schema, a small corpus of student essays and revisions was annotated. Studies show that manual annotation is reliable with…

  12. Automated semantic annotation of rare disease cases: a case study

    PubMed Central

    Taboada, Maria; Rodríguez, Hadriana; Martínez, Diego; Pardo, María; Sobrido, María Jesús

    2014-01-01

    Motivation: As the number of clinical reports in the peer-reviewed medical literature keeps growing, there is an increasing need for online search tools to find and analyze publications on patients with similar clinical characteristics. This problem is especially critical and challenging for rare diseases, where publications of large series are scarce. Through an applied example, we illustrate how to automatically identify new relevant cases and semantically annotate the relevant literature about patient case reports to capture the phenotype of a rare disease named cerebrotendinous xanthomatosis. Results: Our results confirm that it is possible to automatically identify new relevant case reports with a high precision and to annotate them with a satisfactory quality (74% F-measure). Automated annotation with an emphasis to entirely describe all phenotypic abnormalities found in a disease may facilitate curation efforts by supplying phenotype retrieval and assessment of their frequency. Availability and Supplementary information: http://www.usc.es/keam/Phenotype Annotation/. Database URL: http://www.usc.es/keam/PhenotypeAnnotation/ PMID:24903515

  13. Milliken Clean Coal Demonstration Project: A DOE Assessment

    SciTech Connect

    National Energy Technology Laboratory

    2001-08-15

    The goal of the U.S. Department of Energy's (DOE) Clean Coal Technology (CCT) program is to furnish the energy marketplace with a number of advanced, more efficient, and environmentally responsible coal-utilization technologies through demonstration projects. These projects seek to establish the commercial feasibility of the most promising advanced coal technologies that have developed beyond the proof-of-concept stage.

  14. Programming and Training Booklet 4: How To Assess a Project.

    ERIC Educational Resources Information Center

    Peace Corps, Washington, DC. Information Collection and Exchange Div.

    This booklet is one of five in the Peace Corps (PC) Programming and Training Guidelines collection that provides agency-wide programming and training guidance for PC staff and project partners. It shows how to design and implement a monitoring and evaluation (M&E) plan for PC projects. Chapter 1 provides an overview of M&E, including what they are…

  15. Document Selection and Relevance Assessments during a Research Project.

    ERIC Educational Resources Information Center

    White, Marilyn Domas; Wang, Peiling

    User's information needs and the tasks they face change over the stages of a research project. In previous research by Peiling Wang, a cognitive model of users' document selection behavior for their research projects was developed. This study looks at the general applicability of Wang's model to subsequent decision-making about items selected…

  16. Evolving Project E-Scape for National Assessment

    ERIC Educational Resources Information Center

    Kimbell, Richard

    2012-01-01

    In the opening paper in this Special Edition I outlined the major issues that led to the establishment of "project e-scape". The project was intended to develop systems and approaches that enabled learners to build real-time web-based portfolios of their performance (initially) in design & technology and additionally to build systems and…

  17. Lower Columbia River Terminal Fisheries Research Project : Final Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration.

    1995-04-01

    This notice announces BPA`S`s decision to fund the Oregon Department of Fish and Wildlife (ODFW), the Washington Department of Fish and Wildlife (WDFW), and the Clatsop Economic Development Committee for the Lower Columbia River Terminal Fisheries Research Project (Project). The Project will continue the testing of various species/stocks, rearing regimes, and harvest options for terminal fisheries, as a means to increase lower river sport and commercial harvest of hatchery fish, while providing both greater protection of weaker wild stocks and increasing the return of upriver salmon runs to potential Zone 6 Treaty fisheries. The Project involves relocating hatchery smolts to new, additional pen locations in three bays/sloughs in the lower Columbia River along both the Oregon and Washington sides. The sites are Blind Slough and Tongue Point in Clatsop County, Oregon, and Grays Bay/Deep River, Wahkiakum County, Washington. The smolts will be acclimated for various lengths of time in the net pens and released from these sites. The Project will expand upon an existing terminal fisheries project in Youngs Bay, Oregon. The Project may be expanded to other sites in the future, depending on the results of this initial expansion. BPA`S has determined the project is not a major Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an environmental impact statement is not required, and BPA`S is issuing this FONSI.

  18. Assessment of Project-Based Learning in a MECHATRONICS Context

    ERIC Educational Resources Information Center

    Doppelt, Yaron

    2005-01-01

    Project-based learning (PBL) that has authenticity in the pupils' world enables the teaching of science and technology to pupils from a variety of backgrounds. PBL has the potential to enable pupils to research, plan, design, and reflect on the creation of technological projects (Doppelt, 2000). Engineering education, which is common in Israel,…

  19. Dictionary-driven protein annotation.

    PubMed

    Rigoutsos, Isidore; Huynh, Tien; Floratos, Aris; Parida, Laxmi; Platt, Daniel

    2002-09-01

    Computational methods seeking to automatically determine the properties (functional, structural, physicochemical, etc.) of a protein directly from the sequence have long been the focus of numerous research groups. With the advent of advanced sequencing methods and systems, the number of amino acid sequences that are being deposited in the public databases has been increasing steadily. This has in turn generated a renewed demand for automated approaches that can annotate individual sequences and complete genomes quickly, exhaustively and objectively. In this paper, we present one such approach that is centered around and exploits the Bio-Dictionary, a collection of amino acid patterns that completely covers the natural sequence space and can capture functional and structural signals that have been reused during evolution, within and across protein families. Our annotation approach also makes use of a weighted, position-specific scoring scheme that is unaffected by the over-representation of well-conserved proteins and protein fragments in the databases used. For a given query sequence, the method permits one to determine, in a single pass, the following: local and global similarities between the query and any protein already present in a public database; the likeness of the query to all available archaeal/ bacterial/eukaryotic/viral sequences in the database as a function of amino acid position within the query; the character of secondary structure of the query as a function of amino acid position within the query; the cytoplasmic, transmembrane or extracellular behavior of the query; the nature and position of binding domains, active sites, post-translationally modified sites, signal peptides, etc. In terms of performance, the proposed method is exhaustive, objective and allows for the rapid annotation of individual sequences and full genomes. Annotation examples are presented and discussed in Results, including individual queries and complete genomes that were

  20. A review of NASA-sponsored technology assessment projects

    NASA Technical Reports Server (NTRS)

    Mascy, A. C.; Alexander, A. D., III; Wood, R. D.

    1978-01-01

    Recent technology assessment studies sponsored by NASA are reviewed, and a summary of the technical results as well as a critique of the methodologies are presented. The reviews include Assessment of Lighter-Than-Air Technology, Technology Assessment of Portable Energy RDT&P, Technology Assessment of Future Intercity Passenger Transportation Systems, and Technology Assessment of Space Disposal of Radioactive Nuclear Waste. The use of workshops has been introduced as a unique element of some of these assessments. Also included in this report is a brief synopsis of a method of quantifying opinions obtained through such group interactions. Representative of the current technology assessments, these studies cover a broad range of socio-political factors and issues in greater depth than previously considered in NASA sponsored studies. In addition to the lessons learned through the conduct of these studies, a few suggestions for improving the effectiveness of future technology assessments are provided.

  1. South Carolina Higher Education Assessment (SCHEA) Project. Final Report.

    ERIC Educational Resources Information Center

    Johnson, Reid

    A consortium of South Carolina colleges and universities developed assessment programs which would fully satisfy state and accreditation assessment mandates and increase program quality and institutional effectiveness. A South Carolina Higher Education Assessment Network was established with a Coordinating Center at Winthrop College to provide…

  2. Current Knowledge and Projection on Assessing the Effectiveness of Training.

    ERIC Educational Resources Information Center

    Orlansky, Jesse

    This discussion of methods used to assess the effectiveness of training for U.S. Army personnel identifies various types of training, describes methods currently used, and suggests ways of improving the assessment process. The methodology and results of assessments of effectiveness, including the costs associated with the level of performance, are…

  3. An Investigation of Rater Cognition in the Assessment of Projects

    ERIC Educational Resources Information Center

    Crisp, Victoria

    2012-01-01

    In the United Kingdom, the majority of national assessments involve human raters. The processes by which raters determine the scores to award are central to the assessment process and affect the extent to which valid inferences can be made from assessment outcomes. Thus, understanding rater cognition has become a growing area of research in the…

  4. Needs Assessment Model: East Stroudsburg. Project NAMES Workbook. Second Edition.

    ERIC Educational Resources Information Center

    Rookey, T. Jerome

    Intended as a simple, economical method of needs assessment, this model presents four primary tasks: goal definition, program assessment, needs identification, and decision-making. Each step is explained in detail and sample instruments, preplans, goals, and questionnaire items are given. The needs assessment concept is defined as a blending of…

  5. Automatic annotation of organellar genomes with DOGMA

    SciTech Connect

    Wyman, Stacia; Jansen, Robert K.; Boore, Jeffrey L.

    2004-06-01

    Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of extra-nuclear organellar (chloroplast and animal mitochondrial) genomes. It is a web-based package that allows the use of comparative BLAST searches to identify and annotate genes in a genome. DOGMA presents a list of putative genes to the user in a graphical format for viewing and editing. Annotations are stored on our password-protected server. Complete annotations can be extracted for direct submission to GenBank. Furthermore, intergenic regions of specified length can be extracted, as well the nucleotide sequences and amino acid sequences of the genes.

  6. Oncotator: cancer variant annotation tool.

    PubMed

    Ramos, Alex H; Lichtenstein, Lee; Gupta, Manaswi; Lawrence, Michael S; Pugh, Trevor J; Saksena, Gordon; Meyerson, Matthew; Getz, Gad

    2015-04-01

    Oncotator is a tool for annotating genomic point mutations and short nucleotide insertions/deletions (indels) with variant- and gene-centric information relevant to cancer researchers. This information is drawn from 14 different publicly available resources that have been pooled and indexed, and we provide an extensible framework to add additional data sources. Annotations linked to variants range from basic information, such as gene names and functional classification (e.g. missense), to cancer-specific data from resources such as the Catalogue of Somatic Mutations in Cancer (COSMIC), the Cancer Gene Census, and The Cancer Genome Atlas (TCGA). For local use, Oncotator is freely available as a python module hosted on Github (https://github.com/broadinstitute/oncotator). Furthermore, Oncotator is also available as a web service and web application at http://www.broadinstitute.org/oncotator/.

  7. 3D annotation and manipulation of medical anatomical structures

    NASA Astrophysics Data System (ADS)

    Vitanovski, Dime; Schaller, Christian; Hahn, Dieter; Daum, Volker; Hornegger, Joachim

    2009-02-01

    Although the medical scanners are rapidly moving towards a three-dimensional paradigm, the manipulation and annotation/labeling of the acquired data is still performed in a standard 2D environment. Editing and annotation of three-dimensional medical structures is currently a complex task and rather time-consuming, as it is carried out in 2D projections of the original object. A major problem in 2D annotation is the depth ambiguity, which requires 3D landmarks to be identified and localized in at least two of the cutting planes. Operating directly in a three-dimensional space enables the implicit consideration of the full 3D local context, which significantly increases accuracy and speed. A three-dimensional environment is as well more natural optimizing the user's comfort and acceptance. The 3D annotation environment requires the three-dimensional manipulation device and display. By means of two novel and advanced technologies, Wii Nintendo Controller and Philips 3D WoWvx display, we define an appropriate 3D annotation tool and a suitable 3D visualization monitor. We define non-coplanar setting of four Infrared LEDs with a known and exact position, which are tracked by the Wii and from which we compute the pose of the device by applying a standard pose estimation algorithm. The novel 3D renderer developed by Philips uses either the Z-value of a 3D volume, or it computes the depth information out of a 2D image, to provide a real 3D experience without having some special glasses. Within this paper we present a new framework for manipulation and annotation of medical landmarks directly in three-dimensional volume.

  8. Next Generation Models for Storage and Representation of Microbial Biological Annotation

    SciTech Connect

    Quest, Daniel J; Land, Miriam L; Brettin, Thomas S; Cottingham, Robert W

    2010-01-01

    Background Traditional genome annotation systems were developed in a very different computing era, one where the World Wide Web was just emerging. Consequently, these systems are built as centralized black boxes focused on generating high quality annotation submissions to GenBank/EMBL supported by expert manual curation. The exponential growth of sequence data drives a growing need for increasingly higher quality and automatically generated annotation. Typical annotation pipelines utilize traditional database technologies, clustered computing resources, Perl, C, and UNIX file systems to process raw sequence data, identify genes, and predict and categorize gene function. These technologies tightly couple the annotation software system to hardware and third party software (e.g. relational database systems and schemas). This makes annotation systems hard to reproduce, inflexible to modification over time, difficult to assess, difficult to partition across multiple geographic sites, and difficult to understand for those who are not domain experts. These systems are not readily open to scrutiny and therefore not scientifically tractable. The advent of Semantic Web standards such as Resource Description Framework (RDF) and OWL Web Ontology Language (OWL) enables us to construct systems that address these challenges in a new comprehensive way. Results Here, we develop a framework for linking traditional data to OWL-based ontologies in genome annotation. We show how data standards can decouple hardware and third party software tools from annotation pipelines, thereby making annotation pipelines easier to reproduce and assess. An illustrative example shows how TURTLE (Terse RDF Triple Language) can be used as a human readable, but also semantically-aware, equivalent to GenBank/EMBL files. Conclusions The power of this approach lies in its ability to assemble annotation data from multiple databases across multiple locations into a representation that is understandable to

  9. Short Mountain Landfill Gas Recovery Project : Stage 1 Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration.

    1992-05-01

    The Bonneville Power Administration (BPA), a Federal power marketing agency, has statutory responsibilities to supply electrical power to its utility, industrial, and other customers in the Pacific Northwest. BPA`s latest load/resource balance forecast, projects the capability of existing resources to satisfy projected Federal system loads. The forecast indicates a potential resource deficit. The underlying need for action is to satisfy BPA customers` demand for electrical power.

  10. An Economic Evaluation Framework for Assessing Renewable Energy Projects

    SciTech Connect

    Omitaomu, Olufemi A; Badiru, Adedeji B

    2012-01-01

    It is becoming increasingly imperative to integrate renewable energy, such as solar and wind, into electricity generation due to increased regulations on air and water pollution and a sociopolitical desire to develop more clean energy sources. This increased spotlight on renewable energy requires evaluating competing projects using either conventional economic analysis techniques or other economics-based models and approaches in order to select a subset of the projects to be funded. Even then, there are reasons to suspect that techniques applied to renewable energy projects may result in decisions that will reject viable projects due to the use of a limited number of quantifiable and tangible attributes about the projects. This paper presents a framework for economic evaluation of renewable energy projects. The framework is based on a systems approach in which the processes within the entire network of the system, from generation to consumption, are accounted for. Furthermore, the framework uses the concept of fuzzy system to calculate the value of information under conditions of uncertainty.

  11. Helicopter EMS Transport Outcomes Literature: Annotated Review of Articles Published 2007–2011

    PubMed Central

    Brown, Brandon S.; Pogue, Korby A.; Williams, Emily; Hatfield, Jesse; Thomas, Matthew; Arthur, Annette; Thomas, Stephen H.

    2012-01-01

    Helicopter EMS (HEMS) and its possible association with outcomes improvement continues to be a subject of discussion. As is the case with other scientific discourse, debate over HEMS usefulness should be framed around an evidence-based assessment of the relevant literature. In an effort to facilitate the academic pursuit of assessment of HEMS utility, in late 2000 the National Association of EMS Physicians' (NAEMSP) Air Medical Task Force prepared annotated bibliographies of the HEMS-related outcomes literature. As a result of that work, two review articles, one covering HEMS use in nontrauma and the other in trauma, published in 2002 in Prehospital Emergency Care surveyed HEMS outcomes-related literature published between 1980 and mid-2000. The project was extended with two subsequent reviews covering the literature through 2006. This review continues the series, outlining outcomes-associated HEMS literature for the three-year period 2007 through the first half of 2011. PMID:22288016

  12. Expanded microbial genome coverage and improved protein family annotation in the COG database

    PubMed Central

    Galperin, Michael Y.; Makarova, Kira S.; Wolf, Yuri I.; Koonin, Eugene V.

    2015-01-01

    Microbial genome sequencing projects produce numerous sequences of deduced proteins, only a small fraction of which have been or will ever be studied experimentally. This leaves sequence analysis as the only feasible way to annotate these proteins and assign to them tentative functions. The Clusters of Orthologous Groups of proteins (COGs) database (http://www.ncbi.nlm.nih.gov/COG/), first created in 1997, has been a popular tool for functional annotation. Its success was largely based on (i) its reliance on complete microbial genomes, which allowed reliable assignment of orthologs and paralogs for most genes; (ii) orthology-based approach, which used the function(s) of the characterized member(s) of the protein family (COG) to assign function(s) to the entire set of carefully identified orthologs and describe the range of potential functions when there were more than one; and (iii) careful manual curation of the annotation of the COGs, aimed at detailed prediction of the biological function(s) for each COG while avoiding annotation errors and overprediction. Here we present an update of the COGs, the first since 2003, and a comprehensive revision of the COG annotations and expansion of the genome coverage to include representative complete genomes from all bacterial and archaeal lineages down to the genus level. This re-analysis of the COGs shows that the original COG assignments had an error rate below 0.5% and allows an assessment of the progress in functional genomics in the past 12 years. During this time, functions of many previously uncharacterized COGs have been elucidated and tentative functional assignments of many COGs have been validated, either by targeted experiments or through the use of high-throughput methods. A particularly important development is the assignment of functions to several widespread, conserved proteins many of which turned out to participate in translation, in particular rRNA maturation and tRNA modification. The new version of the

  13. Project RAILS: Lessons Learned about Rubric Assessment of Information Literacy Skills

    ERIC Educational Resources Information Center

    Belanger, Jackie; Zou, Ning; Mills, Jenny Rushing; Holmes, Claire; Oakleaf, Megan

    2015-01-01

    Rubric assessment of information literacy is an important tool for librarians seeking to show evidence of student learning. The authors, who collaborated on the Rubric Assessment of Informational Literacy Skills (RAILS) research project, draw from their shared experience to present practical recommendations for implementing rubric assessment in a…

  14. The Effect of Peer Assessment on Project Performance of Students at Different Learning Levels

    ERIC Educational Resources Information Center

    Li, Lan; Gao, Fei

    2016-01-01

    Peer assessment has been increasingly integrated in educational settings as a strategy to foster student learning. Yet little has been studied about how students at different learning levels may benefit from peer assessment. This study examined how peer-assessment and students' learning levels influenced students' project performance using a…

  15. Autonomous Classroom Computer Environments for Learning. Progress Report and Annotated Bibliography.

    ERIC Educational Resources Information Center

    Linn, Marcia C.

    This document provides both a brief progress report for the Autonomous Classroom Computer Environments for Learning (ACCEL) project and an annotated bibliography of publications from this project, the Computers and Problem Solving Project, and other recent publications from the ACCCEL (Accessing the Cognitive Consequences of Computer Environments…

  16. Genome annotation in a community college cell biology lab.

    PubMed

    Beagley, C Timothy

    2013-01-01

    The Biology Department at Salt Lake Community College has used the IMG-ACT toolbox to introduce a genome mapping and annotation exercise into the laboratory portion of its Cell Biology course. This project provides students with an authentic inquiry-based learning experience while introducing them to computational biology and contemporary learning skills. Additionally, the project strengthens student understanding of the scientific method and contributes to student learning gains in curricular objectives centered around basic molecular biology, specifically, the Central Dogma. Importantly, inclusion of this project in the laboratory course provides students with a positive learning environment and allows for the use of cooperative learning strategies to increase overall student success.

  17. NRC assessment of the Department of Energy annealing demonstration project

    SciTech Connect

    Jackson, D.A.; Malik, S.N.

    1997-02-01

    Thermal annealing is the only known method for mitigating the effects of neutron irradiation embrittlement in reactor pressure vessel (RPV) steels. In May 1996, the US Department of Energy (DOE) in conjunction with the American Society of Mechanical Engineers, Westinghouse, Cooperheat, Electric Power Research Institute (with participating utilities), Westinghouse Owner`s Group, Consumers Power, Electricite` de France, Duquesne Light and the Central Research Institute of the Electric Power Industry (Japan) sponsored an annealing demonstration project (ADP) at Marble Hill. The Marble Hill Plant, located in Madison, Indiana, is a Westinghouse 4 loop design. The plant was nearly 70% completed when the project was canceled. Hence, the RPV was never irradiated. The paper will present highlights from the NRCs independent evaluation of the Marble Hill Annealing Demonstration Project.

  18. ONEMercury: Towards Automatic Annotation of Earth Science Metadata

    NASA Astrophysics Data System (ADS)

    Tuarob, S.; Pouchard, L. C.; Noy, N.; Horsburgh, J. S.; Palanisamy, G.

    2012-12-01

    Earth sciences have become more data-intensive, requiring access to heterogeneous data collected from multiple places, times, and thematic scales. For example, research on climate change may involve exploring and analyzing observational data such as the migration of animals and temperature shifts across the earth, as well as various model-observation inter-comparison studies. Recently, DataONE, a federated data network built to facilitate access to and preservation of environmental and ecological data, has come to exist. ONEMercury has recently been implemented as part of the DataONE project to serve as a portal for discovering and accessing environmental and observational data across the globe. ONEMercury harvests metadata from the data hosted by multiple data repositories and makes it searchable via a common search interface built upon cutting edge search engine technology, allowing users to interact with the system, intelligently filter the search results on the fly, and fetch the data from distributed data sources. Linking data from heterogeneous sources always has a cost. A problem that ONEMercury faces is the different levels of annotation in the harvested metadata records. Poorly annotated records tend to be missed during the search process as they lack meaningful keywords. Furthermore, such records would not be compatible with the advanced search functionality offered by ONEMercury as the interface requires a metadata record be semantically annotated. The explosion of the number of metadata records harvested from an increasing number of data repositories makes it impossible to annotate the harvested records manually, urging the need for a tool capable of automatically annotating poorly curated metadata records. In this paper, we propose a topic-model (TM) based approach for automatic metadata annotation. Our approach mines topics in the set of well annotated records and suggests keywords for poorly annotated records based on topic similarity. We utilize the

  19. Post-project geomorphic assessment of a large process-based river restoration project

    USGS Publications Warehouse

    Erwin, Susannah O.; Schmidt, John C.; Allred, Tyler M.

    2016-01-01

    This study describes channel changes following completion of the Provo River Restoration Project (PRRP), the largest stream restoration project in Utah and one of the largest projects in the United States in which a gravel-bed river was fully reconstructed. We summarize project objectives and the design process, and we analyze monitoring data collected during the first 7 years after project completion. Post-project channel adjustment during the study period included two phases: (i) an initial phase of rapid, but small-scale, adjustment during the first years after stream flow was introduced to the newly constructed channel and (ii) a subsequent period of more gradual topographic adjustment and channel migration. Analysis of aerial imagery and ground-survey data demonstrate that the channel has been more dynamic in the downstream 4 km where a local source contributes a significant annual supply of bed material. Here, the channel migrates and exhibits channel adjustments that are more consistent with project objectives. The upstream 12 km of the PRRP are sediment starved, the channel has been laterally stable, and this condition may not be consistent with large-scale project objectives.

  20. Post-project geomorphic assessment of a large process-based river restoration project

    NASA Astrophysics Data System (ADS)

    Erwin, Susannah O.; Schmidt, John C.; Allred, Tyler M.

    2016-10-01

    This study describes channel changes following completion of the Provo River Restoration Project (PRRP), the largest stream restoration project in Utah and one of the largest projects in the United States in which a gravel-bed river was fully reconstructed. We summarize project objectives and the design process, and we analyze monitoring data collected during the first 7 years after project completion. Post-project channel adjustment during the study period included two phases: (i) an initial phase of rapid, but small-scale, adjustment during the first years after stream flow was introduced to the newly constructed channel and (ii) a subsequent period of more gradual topographic adjustment and channel migration. Analysis of aerial imagery and ground-survey data demonstrate that the channel has been more dynamic in the downstream 4 km where a local source contributes a significant annual supply of bed material. Here, the channel migrates and exhibits channel adjustments that are more consistent with project objectives. The upstream 12 km of the PRRP are sediment starved, the channel has been laterally stable, and this condition may not be consistent with large-scale project objectives.

  1. Performance Evaluation and Opportunity Assessment for St. Bernard Project

    SciTech Connect

    Dickson, Bruce

    2011-06-01

    This report describes efforts by IBACOS, a Building America research team, in the St. Bernard Project, a nonprofit, community-based organization whose mission is to assist Hurricane Katrina survivors to return to their homes in the New Orleans area. The report focuses on energy modeling results of two plans that the St. Bernard Project put forth as 'typical' building types and on quality issues that were observed during the field walk and best practice recommendations that could improve the energy efficiency and durability of the renovated homes.

  2. Performance Evaluation and Opportunity Assessment for St. Bernard Project

    SciTech Connect

    Dickson, B.

    2011-06-01

    This report describes efforts by IBACOS, a Department of Energy Building America research team, in the St. Bernard Project, a nonprofit, community-based organization whose mission is to assist Hurricane Katrina survivors return to their homes in the New Orleans area. The report focuses on energy modeling results of two plans that the St. Bernard Project put forth as 'typical' building types and on quality issues that were observed during the field walk and Best Practice recommendations that could improve the energy efficiency and durability of the renovated homes.

  3. Computational algorithms to predict Gene Ontology annotations

    PubMed Central

    2015-01-01

    Background Gene function annotations, which are associations between a gene and a term of a controlled vocabulary describing gene functional features, are of paramount importance in modern biology. Datasets of these annotations, such as the ones provided by the Gene Ontology Consortium, are used to design novel biological experiments and interpret their results. Despite their importance, these sources of information have some known issues. They are incomplete, since biological knowledge is far from being definitive and it rapidly evolves, and some erroneous annotations may be present. Since the curation process of novel annotations is a costly procedure, both in economical and time terms, computational tools that can reliably predict likely annotations, and thus quicken the discovery of new gene annotations, are very useful. Methods We used a set of computational algorithms and weighting schemes to infer novel gene annotations from a set of known ones. We used the latent semantic analysis approach, implementing two popular algorithms (Latent Semantic Indexing and Probabilistic Latent Semantic Analysis) and propose a novel method, the Semantic IMproved Latent Semantic Analysis, which adds a clustering step on the set of considered genes. Furthermore, we propose the improvement of these algorithms by weighting the annotations in the input set. Results We tested our methods and their weighted variants on the Gene Ontology annotation sets of three model organism genes (Bos taurus, Danio rerio and Drosophila melanogaster ). The methods showed their ability in predicting novel gene annotations and the weighting procedures demonstrated to lead to a valuable improvement, although the obtained results vary according to the dimension of the input annotation set and the considered algorithm. Conclusions Out of the three considered methods, the Semantic IMproved Latent Semantic Analysis is the one that provides better results. In particular, when coupled with a proper

  4. Development and Assessment of Service Learning Projects in General Biology

    ERIC Educational Resources Information Center

    Felzien, Lisa; Salem, Laura

    2008-01-01

    Service learning involves providing service to the community while requiring students to meet learning goals in a specific course. A service learning project was implemented in a general biology course at Rockhurst University to involve students in promoting scientific education in conjunction with community partner educators. Students were…

  5. The Application of Games Theory to Group Project Assessment.

    ERIC Educational Resources Information Center

    Pitt, M. J.

    2000-01-01

    Application of game theory to small-group project evaluation in higher education instruction finds that the best strategy for students wishing high grades may not be a strategy that promotes teamwork and cooperation. Suggests that putting students into groups may randomly disadvantage some students relative to others, producing serious unfairness…

  6. An Assessment of the Immigrant Resources Project Preschools.

    ERIC Educational Resources Information Center

    Fraser, Susan; Coulthard, Eleanor

    The effectiveness of the "Immigrant Resource Project" preschool program is evaluated. The preschools meet for two hours twice a week while the childrens' parents are in English as second language classes. Pupils range in age from 2 to 6 years and are drawn from a wide variety of immigrant backgrounds. The objectives are to teach English and foster…

  7. Performance assessment of the PNM Prosperity electricity storage project :

    SciTech Connect

    Roberson, Dakota; Ellison, James F.; Bhatnagar, Dhruv; Schoenwald, David A.

    2014-05-01

    The purpose of this study is to characterize the technical performance of the PNM Prosperity electricity storage project, and to identify lessons learned that can be used to improve similar projects in the future. The PNM Prosperity electricity storage project consists of a 500 kW/350 kWh advanced lead-acid battery with integrated supercapacitor (for energy smoothing) and a 250 kW/1 MWh advanced lead-acid battery (for energy shifting), and is co-located with a 500 kW solar photovoltaic (PV) resource. The project received American Reinvestment and Recovery Act (ARRA) funding. The smoothing system is e ective in smoothing intermittent PV output. The shifting system exhibits good round-trip efficiencies, though the AC-to-AC annual average efficiency is lower than one might hope. Given the current utilization of the smoothing system, there is an opportunity to incorporate additional control algorithms in order to increase the value of the energy storage system.

  8. Alternative Assessment: A Monthly Portfolio Project Improves Student Performance.

    ERIC Educational Resources Information Center

    Valdez, Penelope S.

    2001-01-01

    Describes the use of monthly portfolio projects to track student progress and improve science performance in a 7th grade life science course. Students explain concepts they have learned, produce products to present what they have learned, and use the concepts to critique magazine articles, advertisements, or news stories. Provides an evaluation…

  9. Multimedia Projects in Education: Designing, Producing, and Assessing. Second Edition.

    ERIC Educational Resources Information Center

    Ivers, Karen S.; Barron, Ann E.

    This handbook provides educators with strategies and ideas for incorporating multimedia projects into the curriculum for grades 4-12. With a focus on student learning, the authors show how to plan and implement multimedia activities and engage students in expressing themselves through a variety of media. Using the DDD-E model (Decide, Design,…

  10. Multimedia Projects in Education: Designing, Producing, and Assessing, Third Edition

    ERIC Educational Resources Information Center

    Ivers, Karen S.; Barron, Ann E.

    2005-01-01

    Building on the materials in the two previous successful editions, this book features approximately 40% all new material and updates the previous information. The authors use the DDD-E model (Decide, Design, Develop--Evaluate) to show how to select and plan multimedia projects, use presentation and development tools, manage graphics, audio, and…

  11. Sequential Assessment of Engineering Design Projects at University Level

    ERIC Educational Resources Information Center

    Oehlers, Deric John

    2006-01-01

    Seven years of industrial experience followed by 30 years of academic research and teaching in structural engineering have led the author to believe that the prime objective of a university design course is not the design project itself but to train students to solve problems, as this will last them throughout their careers. It is shown how design…

  12. Assessment of Communication Competencies in Engineering Design Projects.

    ERIC Educational Resources Information Center

    Brinkman, Gert W.; van der Geest, Thea M.

    2003-01-01

    Notes that reforms in engineering education have caused a shift from the traditional stand-alone courses in technical communication for engineering students towards communication training integrated in courses and design projects that allows students to develop four levels of competence. Describes three formats for integrated communication…

  13. Report of the Project on Contracting, Review, and Assessment Procedures.

    ERIC Educational Resources Information Center

    Vermont Community Colleges, Montpelier.

    The broad purpose of this project was to examine all aspects of the Community College of Vermont (CCV) review and contracting process and to recommend changes to the CCV Review Board and Decision Team for implementation. Examination focused on the present program, the contract format, Local Review Committee procedures, the counseling process, and…

  14. Project Prevocational: Prevocational Curriculum and Prevocational Assessment Battery.

    ERIC Educational Resources Information Center

    Burell, Lewis P.; Talarico, Robert L.

    Two products are presented from Project PREVOCATIONAL, designed to focus on entry-level skills and performance levels in 30 vocational education programs for mildly and moderately mentally retarded students. The curriculum is based on a philosophy of exploration, practice and attainment and focuses on short term instructional objectives for 31…

  15. Annotations for the Collaboration of the Health Professionals

    PubMed Central

    Bringay, Sandra; Barry, Catherine; Charlet, Jean

    2006-01-01

    In the French DocPatient project, we work on documentary functionalities to improve the use of the electronic medical record. We suggest that integration of specific uses for paper medical documents in the design of the electronic medical record will improve its utility, use and acceptance. We propose in this paper to add a functionality of annotations in the electronic medical record to reinforce collaboration, coordination and awareness. PMID:17238309

  16. Data-Based Performance Assessments for the DOE Hydropower Advancement Project

    SciTech Connect

    March, Patrick; Wolff, Dr. Paul; Smith, Brennan T; Zhang, Qin Fen; Dham, Rajesh

    2012-01-01

    The U. S. Department of Energy s Hydropower Advancement Project (HAP) was initiated to characterize and trend hydropower asset conditions across the U.S.A. s existing hydropower fleet and to identify and evaluate the upgrading opportunities. Although HAP includes both detailed performance assessments and condition assessments of existing hydropower plants, this paper focuses on the performance assessments. Plant performance assessments provide a set of statistics and indices that characterize the historical extent to which each plant has converted the potential energy at a site into electrical energy for the power system. The performance metrics enable benchmarking and trending of performance across many projects in a variety contexts (e.g., river systems, power systems, and water availability). During FY2011 and FY2012, assessments will be performed on ten plants, with an additional fifty plants scheduled for FY2013. This paper focuses on the performance assessments completed to date, details the performance assessment process, and describes results from the performance assessments.

  17. A Novel Quality Measure and Correction Procedure for the Annotation of Microbial Translation Initiation Sites.

    PubMed

    Overmars, Lex; Siezen, Roland J; Francke, Christof

    2015-01-01

    The identification of translation initiation sites (TISs) constitutes an important aspect of sequence-based genome analysis. An erroneous TIS annotation can impair the identification of regulatory elements and N-terminal signal peptides, and also may flaw the determination of descent, for any particular gene. We have formulated a reference-free method to score the TIS annotation quality. The method is based on a comparison of the observed and expected distribution of all TISs in a particular genome given prior gene-calling. We have assessed the TIS annotations for all available NCBI RefSeq microbial genomes and found that approximately 87% is of appropriate quality, whereas 13% needs substantial improvement. We have analyzed a number of factors that could affect TIS annotation quality such as GC-content, taxonomy, the fraction of genes with a Shine-Dalgarno sequence and the year of publication. The analysis showed that only the first factor has a clear effect. We have then formulated a straightforward Principle Component Analysis-based TIS identification strategy to self-organize and score potential TISs. The strategy is independent of reference data and a priori calculations. A representative set of 277 genomes was subjected to the analysis and we found a clear increase in TIS annotation quality for the genomes with a low quality score. The PCA-based annotation was also compared with annotation with the current tool of reference, Prodigal. The comparison for the model genome of Escherichia coli K12 showed that both methods supplement each other and that prediction agreement can be used as an indicator of a correct TIS annotation. Importantly, the data suggest that the addition of a PCA-based strategy to a Prodigal prediction can be used to 'flag' TIS annotations for re-evaluation and in addition can be used to evaluate a given annotation in case a Prodigal annotation is lacking.

  18. A Novel Quality Measure and Correction Procedure for the Annotation of Microbial Translation Initiation Sites

    PubMed Central

    Overmars, Lex; Siezen, Roland J.; Francke, Christof

    2015-01-01

    The identification of translation initiation sites (TISs) constitutes an important aspect of sequence-based genome analysis. An erroneous TIS annotation can impair the identification of regulatory elements and N-terminal signal peptides, and also may flaw the determination of descent, for any particular gene. We have formulated a reference-free method to score the TIS annotation quality. The method is based on a comparison of the observed and expected distribution of all TISs in a particular genome given prior gene-calling. We have assessed the TIS annotations for all available NCBI RefSeq microbial genomes and found that approximately 87% is of appropriate quality, whereas 13% needs substantial improvement. We have analyzed a number of factors that could affect TIS annotation quality such as GC-content, taxonomy, the fraction of genes with a Shine-Dalgarno sequence and the year of publication. The analysis showed that only the first factor has a clear effect. We have then formulated a straightforward Principle Component Analysis-based TIS identification strategy to self-organize and score potential TISs. The strategy is independent of reference data and a priori calculations. A representative set of 277 genomes was subjected to the analysis and we found a clear increase in TIS annotation quality for the genomes with a low quality score. The PCA-based annotation was also compared with annotation with the current tool of reference, Prodigal. The comparison for the model genome of Escherichia coli K12 showed that both methods supplement each other and that prediction agreement can be used as an indicator of a correct TIS annotation. Importantly, the data suggest that the addition of a PCA-based strategy to a Prodigal prediction can be used to ‘flag’ TIS annotations for re-evaluation and in addition can be used to evaluate a given annotation in case a Prodigal annotation is lacking. PMID:26204119

  19. An assessment of adherence to basic ecological principles by payments for ecosystem service projects.

    PubMed

    Prager, C M; Varga, A; Olmsted, P; Ingram, J C; Cattau, M; Freund, C; Wynn-Grant, R; Naeem, S

    2016-08-01

    Programs and projects employing payments for ecosystem service (PES) interventions achieve their objectives by linking buyers and sellers of ecosystem services. Although PES projects are popular conservation and development interventions, little is known about their adherence to basic ecological principles. We conducted a quantitative assessment of the degree to which a global set of PES projects adhered to four ecological principles that are basic scientific considerations for any project focused on ecosystem management: collection of baseline data, identification of threats to an ecosystem service, monitoring, and attention to ecosystem dynamics or the formation of an adaptive management plan. We evaluated 118 PES projects in three markets-biodiversity, carbon, and water-compiled using websites of major conservation organizations; ecology, economic, and climate-change databases; and three scholarly databases (ISI Web of Knowledge, Web of Science, and Google Scholar). To assess adherence to ecological principles, we constructed two scientific indices (one additive [ASI] and one multiplicative [MSI]) based on our four ecological criteria and analyzed index scores by relevant project characteristics (e.g., sector, buyer, seller). Carbon-sector projects had higher ASI values (P < 0.05) than water-sector projects and marginally higher ASI scores (P < 0.1) than biodiversity-sector projects, demonstrating their greater adherence to ecological principles. Projects financed by public-private partnerships had significantly higher ASI values than projects financed by governments (P < 0.05) and marginally higher ASI values than those funded by private entities (P < 0.1). We did not detect differences in adherence to ecological principles based on the inclusion of cobenefits, the spatial extent of a project, or the size of a project's budget. These findings suggest, at this critical phase in the rapid growth of PES projects, that fundamental ecological principles should be

  20. An assessment of adherence to basic ecological principles by payments for ecosystem service projects.

    PubMed

    Prager, C M; Varga, A; Olmsted, P; Ingram, J C; Cattau, M; Freund, C; Wynn-Grant, R; Naeem, S

    2016-08-01

    Programs and projects employing payments for ecosystem service (PES) interventions achieve their objectives by linking buyers and sellers of ecosystem services. Although PES projects are popular conservation and development interventions, little is known about their adherence to basic ecological principles. We conducted a quantitative assessment of the degree to which a global set of PES projects adhered to four ecological principles that are basic scientific considerations for any project focused on ecosystem management: collection of baseline data, identification of threats to an ecosystem service, monitoring, and attention to ecosystem dynamics or the formation of an adaptive management plan. We evaluated 118 PES projects in three markets-biodiversity, carbon, and water-compiled using websites of major conservation organizations; ecology, economic, and climate-change databases; and three scholarly databases (ISI Web of Knowledge, Web of Science, and Google Scholar). To assess adherence to ecological principles, we constructed two scientific indices (one additive [ASI] and one multiplicative [MSI]) based on our four ecological criteria and analyzed index scores by relevant project characteristics (e.g., sector, buyer, seller). Carbon-sector projects had higher ASI values (P < 0.05) than water-sector projects and marginally higher ASI scores (P < 0.1) than biodiversity-sector projects, demonstrating their greater adherence to ecological principles. Projects financed by public-private partnerships had significantly higher ASI values than projects financed by governments (P < 0.05) and marginally higher ASI values than those funded by private entities (P < 0.1). We did not detect differences in adherence to ecological principles based on the inclusion of cobenefits, the spatial extent of a project, or the size of a project's budget. These findings suggest, at this critical phase in the rapid growth of PES projects, that fundamental ecological principles should be

  1. UMTRA project disposal cell cover biointrusion sensitivity assessment, Revision 1

    SciTech Connect

    1995-10-01

    This study provides an analysis of potential changes that may take place in a Uranium Mill Tailings Remedial Action (UMTRA) Project disposal cell cover system as a result of plant biointrusion. Potential changes are evaluated by performing a sensitivity analysis of the relative impact of root penetrations on radon flux out of the cell cover and/or water infiltration into the cell cover. Data used in this analysis consist of existing information on vegetation growth on selected cell cover systems and information available from published studies and/or other available project research. Consistent with the scope of this paper, no new site-specific data were collected from UMTRA Project sites. Further, this paper does not focus on the issue of plant transport of radon gas or other contaminants out of the disposal cell cover though it is acknowledged that such transport has the potential to be a significant pathway for contaminants to reach the environment during portions of the design life of a disposal cell where plant growth occurs. Rather, this study was performed to evaluate the effects of physical penetration and soil drying caused by plant roots that have and are expected to continue to grow in UMTRA Project disposal cell covers. An understanding of the biological and related physical processes that take place within the cover systems of the UMTRA Project disposal cells helps the U.S. Department of Energy (DOE) determine if the presence of a plant community on these cells is detrimental, beneficial, or of mixed value in terms of the cover system`s designed function. Results of this investigation provide information relevant to the formulation of a vegetation control policy.

  2. Variobox: automatic detection and annotation of human genetic variants.

    PubMed

    Gaspar, Paulo; Lopes, Pedro; Oliveira, Jorge; Santos, Rosário; Dalgleish, Raymond; Oliveira, José Luís

    2014-02-01

    Triggered by the sequencing of the human genome, personalized medicine has been one of the fastest growing research areas in the last decade. Multiple software and hardware technologies have been developed by several projects, culminating in the exponential growth of genetic data. Considering the technological developments in this field, it is now fairly easy and inexpensive to obtain genetic profiles for unique individuals, such as those performed by several genetic analysis companies. The availability of computational tools that simplify genetic data analysis and the disclosure of biomedical evidences are of utmost importance. We present Variobox, a desktop tool to annotate, analyze, and compare human genes. Variobox obtains variant annotation data from WAVe, protein metadata annotations from Protein Data Bank, and sequences are obtained from Locus Reference Genomic or RefSeq databases. To explore the data, Variobox provides an advanced sequence visualization that enables agile navigation through genetic regions. DNA sequencing data can be compared with reference sequences retrieved from LRG or RefSeq records, identifying and automatically annotating new potential variants. These features and data, ranging from patient sequences to HGVS-compliant variant descriptions, are combined in an intuitive interface to analyze genes and variants. Variobox is a Java application, available at http://bioinformatics.ua.pt/variobox.

  3. The Maricopa Integrated Risk Assessment Project: A New Way of Looking at Risk

    ERIC Educational Resources Information Center

    Unks, Ruth A.; Thor, Linda

    2008-01-01

    This article reviews the Maricopa Integrated Risk Assessment (MIRA) project and discusses its challenges and successes. Strategies and resources are offered for assisting community college administrators, faculty, and staff to successfully implement enterprise risk management at their institutions.

  4. Summary results of an assessment of research projects in the Solar Federal Wind Energy Research Program

    NASA Astrophysics Data System (ADS)

    1992-12-01

    The Office of Program Analysis (OPA) undertook an assessment of 26 research projects (listed in Appendix A) sponsored by the Solar Thermal Electric Program. This report summarizes the results of that review.

  5. A statistical framework to predict functional non-coding regions in the human genome through integrated analysis of annotation data.

    PubMed

    Lu, Qiongshi; Hu, Yiming; Sun, Jiehuan; Cheng, Yuwei; Cheung, Kei-Hoi; Zhao, Hongyu

    2015-05-27

    Identifying functional regions in the human genome is a major goal in human genetics. Great efforts have been made to functionally annotate the human genome either through computational predictions, such as genomic conservation, or high-throughput experiments, such as the ENCODE project. These efforts have resulted in a rich collection of functional annotation data of diverse types that need to be jointly analyzed for integrated interpretation and annotation. Here we present GenoCanyon, a whole-genome annotation method that performs unsupervised statistical learning using 22 computational and experimental annotations thereby inferring the functional potential of each position in the human genome. With GenoCanyon, we are able to predict many of the known functional regions. The ability of predicting functional regions as well as its generalizable statistical framework makes GenoCanyon a unique and powerful tool for whole-genome annotation. The GenoCanyon web server is available at http://genocanyon.med.yale.edu.

  6. Social impact evaluation: Some implications of the specific decisional context approach for Anticipatory Project Assessment (ARA)

    NASA Technical Reports Server (NTRS)

    Mayo, L. H.

    1975-01-01

    An anticipatory project assessment is discussed which is characterized as the capacity to perform, and the disposition to take into account in relevant decisional areas, the following operations: identification of the significant effects which will result from the introduction of a specified project configuration into alternative projected future social environments during the planning, implementation, and operational states; evaluation of such effects in terms of social impacts on affected participants and social value-institutional processes in accord with specified concepts of social justice.

  7. TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes

    PubMed Central

    Leroy, Philippe; Guilhot, Nicolas; Sakai, Hiroaki; Bernard, Aurélien; Choulet, Frédéric; Theil, Sébastien; Reboux, Sébastien; Amano, Naoki; Flutre, Timothée; Pelegrin, Céline; Ohyanagi, Hajime; Seidel, Michael; Giacomoni, Franck; Reichstadt, Mathieu; Alaux, Michael; Gicquello, Emmanuelle; Legeai, Fabrice; Cerutti, Lorenzo; Numa, Hisataka; Tanaka, Tsuyoshi; Mayer, Klaus; Itoh, Takeshi; Quesneville, Hadi; Feuillet, Catherine

    2012-01-01

    In support of the international effort to obtain a reference sequence of the bread wheat genome and to provide plant communities dealing with large and complex genomes with a versatile, easy-to-use online automated tool for annotation, we have developed the TriAnnot pipeline. Its modular architecture allows for the annotation and masking of transposable elements, the structural, and functional annotation of protein-coding genes with an evidence-based quality indexing, and the identification of conserved non-coding sequences and molecular markers. The TriAnnot pipeline is parallelized on a 712 CPU computing cluster that can run a 1-Gb sequence annotation in less than 5 days. It is accessible through a web interface for small scale analyses or through a server for large scale annotations. The performance of TriAnnot was evaluated in terms of sensitivity, specificity, and general fitness using curated reference sequence sets from rice and wheat. In less than 8 h, TriAnnot was able to predict more than 83% of the 3,748 CDS from rice chromosome 1 with a fitness of 67.4%. On a set of 12 reference Mb-sized contigs from wheat chromosome 3B, TriAnnot predicted and annotated 93.3% of the genes among which 54% were perfectly identified in accordance with the reference annotation. It also allowed the curation of 12 genes based on new biological evidences, increasing the percentage of perfect gene prediction to 63%. TriAnnot systematically showed a higher fitness than other annotation pipelines that are not improved for wheat. As it is easily adaptable to the annotation of other plant genomes, TriAnnot should become a useful resource for the annotation of large and complex genomes in the future. PMID:22645565

  8. Implementation and Outcomes of Online Self and Peer Assessment on Group Based Honours Research Projects

    ERIC Educational Resources Information Center

    Wu, Chengqing; Chanda, Emmanuel; Willison, John

    2014-01-01

    Honours research projects in the School of Civil, Environmental and Mining Engineering at the University of Adelaide are run with small groups of students working with an academic supervisor in a chosen area for one year. The research project is mainly self-directed study, which makes it very difficult to fairly assess the contribution of…

  9. Using Projects Scoring Rubrics to Assess Student Learning in an Information Systems Program

    ERIC Educational Resources Information Center

    Petkov, Doncho; Petkova, Olga; D'Onofrio, Marianne; Jarmoszko, A. T.

    2008-01-01

    This paper is about using projects for assessment of student learning in different courses of an Information Systems (IS) program. An overview of the role of educational projects in student learning is presented. The various aspects of defining standardized rubrics across an IS program are discussed. A methodology for the use of such rubrics in…

  10. Understanding Project-Based Learning in Second Life with a Pedagogy, Training, and Assessment Trio

    ERIC Educational Resources Information Center

    Jarmon, Leslie; Traphagan, Tomoko; Mayrath, Michael

    2008-01-01

    This paper presents an empirical study of how Second Life (SL) was utilized for a highly successful project-based graduate interdisciplinary communication course. Researchers found that an integrated threefold approach emphasizing project-based pedagogy, technical training and support, and assessment/research was effective in cultivating and…

  11. Qualitative assessment of agritourism safety guidelines: a demonstration project.

    PubMed

    Tutor-Marcom, Robin; Greer, Annette; Clay, Maria; Ellis, Tammy; Thompson, Tami; Adam-Samura, Esther Seisay

    2013-01-01

    In 2007, the National Children's Center for Rural and Agricultural Health and Safety (NCCRAHS) published Agritourism Health and Safety Guidelines for Children to provide helpful recommendations for protecting the health and safety of children visiting agritourism farms. Supplement A: Policies and Procedures Guide and Supplement B: Worksite Guide were subsequently published in 2009 and provided agritourism farms with checklists to use in reviewing, planning, and implementing their own health and safety practices. In order to better understand what would be required of a farm wishing to implement the guidelines using Supplements A and B, the North Carolina Agromedicine Institute conducted a single-family farm demonstration project with support from the NCCRAHS. The aims of the project were to (1) determine child health and safety risks associated with an existing agritourism farm; (2) determine the cost of making improvements necessary to reduce risks; and (3) use project findings to motivate other agritourism farms, Cooperative Extension agents, and agritourism insurers to adopt or recommend Agritourism Health and Safety Guidelines for Children for their own farms or farms with which they work. At the conclusion of the study, the target farm was in compliance with an average of 86.9% of items in Supplements A and B. Furthermore, 89% of individuals self-identifying as farmers or farm workers and 100% of Cooperative Extension agents and agritourism insurers attending an end-of-project workshop indicated their intent to adopt or recommend Agritourism Health and Safety Guidelines for Children for their own farms or farms with which they work. PMID:23540301

  12. Intelligent Vehicle Charging Benefits Assessment Using EV Project Data

    SciTech Connect

    Letendre, Steven; Gowri, Krishnan; Kintner-Meyer, Michael CW; Pratt, Richard M.

    2013-12-01

    PEVs can represent a significant power resource for the grid. An IVCI with bi-direction V2G capabilities would allow PEVs to provide grid support services and thus generate a source of revenue for PEV owners. The fleet of EV Project vehicles represents a power resource between 30 MW and 90 MW, depending on the power rating of the grid connection (5-15 kW). Aggregation of vehicle capacity would allow PEVs to participate in wholesale reserve capacity markets. One of the key insights from EV Project data is the fact that vehicles are connected to an EVSE much longer than is necessary to deliver a full charge. During these hours when the vehicles are not charging, they can be participating in wholesale power markets providing the high-value services of regulation and spinning reserves. The annual gross revenue potential for providing these services using the fleet of EV Project vehicles is several hundred thousands of dollars to several million dollars annually depending on the power rating of the grid interface, the number of hours providing grid services, and the market being served. On a per vehicle basis, providing grid services can generate several thousands of dollars over the life of the vehicle.

  13. Automatically Annotating Topics in Transcripts of Patient-Provider Interactions via Machine Learning

    PubMed Central

    Wallace, Byron C.; Laws, M. Barton; Small, Kevin; Wilson, Ira B.; Trikalinos, Thomas A.

    2013-01-01

    Background Annotated patient-provider encounters can provide important insights into clinical communication, ultimately suggesting how it might be improved to effect better health outcomes. But annotating outpatient transcripts with Roter or General Medical Interaction Analysis System (GMIAS) codes is expensive, limiting the scope of such analyses. We propose automatically annotating transcripts of patient-provider interactions with topic codes via machine learning. Methods We use a conditional random field (CRF) to model utterance topic probabilities. The model accounts for the sequential structure of conversations and the words comprising utterances. We assess predictive performance via 10- fold cross-validation over GMIAS-annotated transcripts of 360 outpatient visits (over 230,000 utterances). We then used automated in place of manual annotations to reproduce an analysis of 116 additional visits from a randomized trial that used GMIAS to assess the efficacy of an intervention aimed at improving communication around antiretroviral (ARV) adherence. Results With respect to six topic codes, the CRF achieved a mean pairwise kappa compared with human annotators of 0.49 (range: 0.47, 0.53) and a mean overall accuracy of 0.64 (range: 0.62, 0.66). With respect to the RCT re-analysis, results using automated annotations agreed with those obtained using manual ones. According to the manual annotations, the median number of ARV-related utterances without and with the intervention was 49.5 versus 76, respectively (paired sign test p=0.07). Using automated annotations, the respective numbers were 39 versus 55 (p=0.04). Limitations While moderately accurate, the predicted annotations are far from perfect. Conversational topics are intermediate outcomes; their utility is still being researched. Conclusions This foray into automated topic inference suggests that machine learning methods can classify utterances comprising patient-provider interactions into clinically relevant

  14. Accelerator Production of Tritium project process waste assessment

    SciTech Connect

    Carson, S.D.; Peterson, P.K.

    1995-09-01

    DOE has made a commitment to compliance with all applicable environmental regulatory requirements. In this respect, it is important to consider and design all tritium supply alternatives so that they can comply with these requirements. The management of waste is an integral part of this activity and it is therefore necessary to estimate the quantities and specific wastes that will be generated by all tritium supply alternatives. A thorough assessment of waste streams includes waste characterization, quantification, and the identification of treatment and disposal options. The waste assessment for APT has been covered in two reports. The first report was a process waste assessment (PWA) that identified and quantified waste streams associated with both target designs and fulfilled the requirements of APT Work Breakdown Structure (WBS) Item 5.5.2.1. This second report is an expanded version of the first that includes all of the data of the first report, plus an assessment of treatment and disposal options for each waste stream identified in the initial report. The latter information was initially planned to be issued as a separate Waste Treatment and Disposal Options Assessment Report (WBS Item 5.5.2.2).

  15. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation

    PubMed Central

    Portales-Casamar, Elodie; Kirov, Stefan; Lim, Jonathan; Lithwick, Stuart; Swanson, Magdalena I; Ticoll, Amy; Snoddy, Jay; Wasserman, Wyeth W

    2007-01-01

    PAZAR is an open-access and open-source database of transcription factor and regulatory sequence annotation with associated web interface and programming tools for data submission and extraction. Curated boutique data collections can be maintained and disseminated through the unified schema of the mall-like PAZAR repository. The Pleiades Promoter Project collection of brain-linked regulatory sequences is introduced to demonstrate the depth of annotation possible within PAZAR. PAZAR, located at , is open for business. PMID:17916232

  16. categoryCompare, an analytical tool based on feature annotations

    PubMed Central

    Flight, Robert M.; Harrison, Benjamin J.; Mohammad, Fahim; Bunge, Mary B.; Moon, Lawrence D. F.; Petruska, Jeffrey C.; Rouchka, Eric C.

    2014-01-01

    Assessment of high-throughput—omics data initially focuses on relative or raw levels of a particular feature, such as an expression value for a transcript, protein, or metabolite. At a second level, analyses of annotations including known or predicted functions and associations of each individual feature, attempt to distill biological context. Most currently available comparative- and meta-analyses methods are dependent on the availability of identical features across data sets, and concentrate on determining features that are differentially expressed across experiments, some of which may be considered “biomarkers.” The heterogeneity of measurement platforms and inherent variability of biological systems confounds the search for robust biomarkers indicative of a particular condition. In many instances, however, multiple data sets show involvement of common biological processes or signaling pathways, even though individual features are not commonly measured or differentially expressed between them. We developed a methodology, categoryCompare, for cross-platform and cross-sample comparison of high-throughput data at the annotation level. We assessed the utility of the approach using hypothetical data, as well as determining similarities and differences in the set of processes in two instances: (1) denervated skin vs. denervated muscle, and (2) colon from Crohn's disease vs. colon from ulcerative colitis (UC). The hypothetical data showed that in many cases comparing annotations gave superior results to comparing only at the gene level. Improved analytical results depended as well on the number of genes included in the annotation term, the amount of noise in relation to the number of genes expressing in unenriched annotation categories, and the specific method in which samples are combined. In the skin vs. muscle denervation comparison, the tissues demonstrated markedly different responses. The Crohn's vs. UC comparison showed gross similarities in inflammatory

  17. Student Ratings of Instruction in Postsecondary Institutions: A Comprehensive Annotated Bibliography of Research Reported since 1968. Volume 1. Educational Assessment Center Project 264.

    ERIC Educational Resources Information Center

    de Wolf, Virginia A.

    This 220-item bibliography is the first in a series of reports summarizing research in the evaluation of instruction by students in postsecondary institutions. Articles published since January 1968 and collected by this author before May 1974 furnish the contents. Only research on student ratings of instruction in a postsecondary setting and…

  18. Financial Information Project: Assessing the Financial Interests of College Students

    ERIC Educational Resources Information Center

    Masuo, Diane M.; Kutara, Pamela; Wall, Ronald; Cheang, Michael

    2007-01-01

    College graduates are entering the world of work with record levels of school-related debt despite being generally unprepared to face the financial challenges of life after college. Findings from a needs assessment survey of financial topics of interest to college students and staff/faculty and preferences for how the information should be…

  19. Project Ethnography: An Anthropological Approach To Assessing Digital Library Services.

    ERIC Educational Resources Information Center

    Seadle, Michael

    2000-01-01

    Suggests that in digital library services assessment, anthropology can provide the initial understanding, the intellectual basis, on which informed choices about sample population, survey design, or focus group selection can reasonably be made. Analyzes the National Gallery of the Spoken Word (NGSW). Includes brief descriptions of nine NGSW…

  20. Principles of Assessment for Project and Research Based Learning

    ERIC Educational Resources Information Center

    Hunaiti, Ziad; Grimaldi, Silvia; Goven, Dharmendra; Mootanah, Rajshree; Martin, Louise

    2010-01-01

    Purpose: The purpose of this paper is to provide assessment guidelines which help to implement research-based education in science and technology areas, which would benefit from the quality of this type of education within this subject area. Design/methodology/approach: This paper is a reflection on, and analysis of, different aspects of…

  1. The Findings of an Assessment Audit: An NTFS Project Report

    ERIC Educational Resources Information Center

    Hughes, Ian

    2006-01-01

    An Assessment Audit is described consisting of 47 questions, each being scored 0 to 4, by the module team depending on the extent to which the audit point was satisfied. Scores of 2 or less indicated unsatisfactory provision. Audits were carried out on 14 bioscience- or medicine-based modules in 13 universities. There was great variability between…

  2. Assessing Learning from a Student Community Engagement Project

    ERIC Educational Resources Information Center

    Jung, Jessica

    2011-01-01

    Purpose: The purpose of this paper is to chart developments in a community engagement scheme run by two Universities in the North East, offering students academic credit in return for work within the local community. The particular focus is on how learning has been assessed from this work experience, within the requirements of higher education…

  3. Health impact assessment of industrial development projects: a spatio-temporal visualization.

    PubMed

    Winkler, Mirko S; Krieger, Gary R; Divall, Mark J; Singer, Burton H; Utzinger, Jürg

    2012-05-01

    Development and implementation of large-scale industrial projects in complex eco-epidemiological settings typically require combined environmental, social and health impact assessments. We present a generic, spatio-temporal health impact assessment (HIA) visualization, which can be readily adapted to specific projects and key stakeholders, including poorly literate communities that might be affected by consequences of a project. We illustrate how the occurrence of a variety of complex events can be utilized for stakeholder communication, awareness creation, interactive learning as well as formulating HIA research and implementation questions. Methodological features are highlighted in the context of an iron ore development in a rural part of Africa.

  4. Wildlife Impact Assessment Palisades Project, Idaho, Final Report.

    SciTech Connect

    Sather-Blair, Signe

    1985-02-01

    The Habitat Evaluation Procedures were used to evaluate pre- and post-construction habitat conditions of the US Bureau of Reclamation's Palisades Project in eastern Idaho. Eight evaluation species were selected with losses expressed in the number of Habitat Units (HU's). One HU is equivalent to one acre of prime habitat. The evaluation estimated that a loss of 2454 HU's of mule deer habitat, 2276 HU's of mink habitat, 2622 HU's of mallard habitat, 805 HU's of Canada goose habitat, 2331 HU's of ruffed grouse habitat, 5941 and 18,565 HU's for breeding and wintering bald eagles, and 1336 and 704 HU's for forested and scrub-shrub wetland nongame species occurred as a result of the project. The study area currently has 29 active osprey nests located around the reservoir and the mudflats probably provide more feeding habitat for migratory shore birds and waterfowl than was previously available along the river. A comparison of flow conditions on the South Fork of the Snake River below the dam between pre- and post-construction periods also could not substantiate claims that water releases from the dam were causing more Canada goose nest losses than flow in the river prior to construction. 41 refs., 16 figs., 9 tabs.

  5. Mid-Columbia Coho Salmon Reintroduction Feasibility Project : Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration; Washington Department of Fish and Wildlife; Confederated Tribes and Bands of the Yakama Nation

    1999-01-01

    Before the Bonneville Power Administration (BPA) decides whether to fund a program to reintroduce coho salmon to mid-Columbia River basin tributaries, research is needed to determine the ecological risks and biological feasibility of such an effort. Since the early 1900s, the native stock of coho has been decimated in the tributaries of the middle reach of the Columbia River. The four Columbia River Treaty Tribes identified coho reintroduction in the mid-Columbia as a priority in the Tribal Restoration Plan. It is a comprehensive plan put forward by the Tribes to restore the Columbia River fisheries. In 1996, the Northwest Power Planning Council (NPPC) recommended the tribal mid-Columbia reintroduction project for funding by BPA. It was identified as one of fifteen high-priority supplementation projects for the Columbia River basin, and was incorporated into the NPPC`s Fish and Wildlife Program. The release of coho from lower Columbia hatcheries into mid-Columbia tributaries is also recognized in the Columbia River Fish Management Plan.

  6. Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci.

    PubMed

    Trynka, Gosia; Westra, Harm-Jan; Slowikowski, Kamil; Hu, Xinli; Xu, Han; Stranger, Barbara E; Klein, Robert J; Han, Buhm; Raychaudhuri, Soumya

    2015-07-01

    Identifying genomic annotations that differentiate causal from trait-associated variants is essential to fine mapping disease loci. Although many studies have identified non-coding functional annotations that overlap disease-associated variants, these annotations often colocalize, complicating the ability to use these annotations for fine mapping causal variation. We developed a statistical approach (Genomic Annotation Shifter [GoShifter]) to assess whether enriched annotations are able to prioritize causal variation. GoShifter defines the null distribution of an annotation overlapping an allele by locally shifting annotations; this approach is less sensitive to biases arising from local genomic structure than commonly used enrichment methods that depend on SNP matching. Local shifting also allows GoShifter to identify independent causal effects from colocalizing annotations. Using GoShifter, we confirmed that variants in expression quantitative trail loci drive gene-expression changes though DNase-I hypersensitive sites (DHSs) near transcription start sites and independently through 3' UTR regulation. We also showed that (1) 15%-36% of trait-associated loci map to DHSs independently of other annotations; (2) loci associated with breast cancer and rheumatoid arthritis harbor potentially causal variants near the summits of histone marks rather than full peak bodies; (3) variants associated with height are highly enriched in embryonic stem cell DHSs; and (4) we can effectively prioritize causal variation at specific loci.

  7. 75 FR 44805 - Central Utah Project Completion Act; Notice of Availability, Draft Environmental Assessment...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-29

    ... Central Utah Project Completion Act; Notice of Availability, Draft Environmental Assessment (Draft EA); Realignment of a Portion of the Utah Lake Drainage Basin Water Delivery System AGENCY: Office of the Assistant Secretary--Water and Science, Interior ACTION: Notice of Availability, Draft Environmental Assessment...

  8. The ILSI-HESI Project on Animal Alternative Needs in Environmental Risk Assessment

    EPA Science Inventory

    The ILSI Health and Environmental Sciences Institute (HESI) established a project in 2009 on Animal Alternatives in Environmental Risk Assessment (AA-ERA) following a successful two-year emerging issues assessment of the topic. The early stages of this work included the execution...

  9. 43 CFR 413.4 - Assessment of other project act lands and rights of way.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 43 Public Lands: Interior 1 2010-10-01 2010-10-01 false Assessment of other project act lands and rights of way. 413.4 Section 413.4 Public Lands: Interior Regulations Relating to Public Lands BUREAU OF RECLAMATION, DEPARTMENT OF THE INTERIOR ASSESSMENT BY IRRIGATION DISTRICTS OF LANDS OWNED BY THE UNITED...

  10. Peer Assessment in Group Projects Accounting for Assessor Reliability by an Iterative Method

    ERIC Educational Resources Information Center

    Ko, Sung-Seok

    2014-01-01

    This study proposes an advanced method to factor in the contributions of individual group members engaged in an integrated group project using peer assessment procedures. Conway et al. proposed the Individual Weight Factor (IWF) method for peer assessment which has been extensively developed over the years. However, most methods associated with…

  11. Assessing the Status of Women Students and Employees in Vocational Education in California. Project PASSEVE.

    ERIC Educational Resources Information Center

    Graesser, Cheryl C.; Rose, Clare

    The Project to Assess the Status of Women Students and Employees in Vocational Education assessed number and distribution of women students and employees in vocational programs, their perceptions of equal access, and extent of efforts to address sex equity. Its main activity was a survey of 3,609 vocational students, 455 faculty, 126 counselors,…

  12. Unsupervised Decoding of Long-Term, Naturalistic Human Neural Recordings with Automated Video and Audio Annotations.

    PubMed

    Wang, Nancy X R; Olson, Jared D; Ojemann, Jeffrey G; Rao, Rajesh P N; Brunton, Bingni W

    2016-01-01

    Fully automated decoding of human activities and intentions from direct neural recordings is a tantalizing challenge in brain-computer interfacing. Implementing Brain Computer Interfaces (BCIs) outside carefully controlled experiments in laboratory settings requires adaptive and scalable strategies with minimal supervision. Here we describe an unsupervised approach to decoding neural states from naturalistic human brain recordings. We analyzed continuous, long-term electrocorticography (ECoG) data recorded over many days from the brain of subjects in a hospital room, with simultaneous audio and video recordings. We discovered coherent clusters in high-dimensional ECoG recordings using hierarchical clustering and automatically annotated them using speech and movement labels extracted from audio and video. To our knowledge, this represents the first time techniques from computer vision and speech processing have been used for natural ECoG decoding. Interpretable behaviors were decoded from ECoG data, including moving, speaking and resting; the results were assessed by comparison with manual annotation. Discovered clusters were projected back onto the brain revealing features consistent with known functional areas, opening the door to automated functional brain mapping in natural settings. PMID:27148018

  13. jMOTU and Taxonerator: Turning DNA Barcode Sequences into Annotated Operational Taxonomic Units

    PubMed Central

    Blaxter, Mark

    2011-01-01

    Background DNA barcoding and other DNA sequence-based techniques for investigating and estimating biodiversity require explicit methods for associating individual sequences with taxa, as it is at the taxon level that biodiversity is assessed. For many projects, the bioinformatic analyses required pose problems for laboratories whose prime expertise is not in bioinformatics. User-friendly tools are required for both clustering sequences into molecular operational taxonomic units (MOTU) and for associating these MOTU with known organismal taxonomies. Results Here we present jMOTU, a Java program for the analysis of DNA barcode datasets that uses an explicit, determinate algorithm to define MOTU. We demonstrate its usefulness for both individual specimen-based Sanger sequencing surveys and bulk-environment metagenetic surveys using long-read next-generation sequencing data. jMOTU is driven through a graphical user interface, and can analyse tens of thousands of sequences in a short time on a desktop computer. A companion program, Taxonerator, that adds traditional taxonomic annotation to MOTU, is also presented. Clustering and taxonomic annotation data are stored in a relational database, and are thus amenable to subsequent data mining and web presentation. Conclusions jMOTU efficiently and robustly identifies the molecular taxa present in survey datasets, and Taxonerator decorates the MOTU with putative identifications. jMOTU and Taxonerator are freely available from http://www.nematodes.org/. PMID:21541350

  14. Unsupervised Decoding of Long-Term, Naturalistic Human Neural Recordings with Automated Video and Audio Annotations

    PubMed Central

    Wang, Nancy X. R.; Olson, Jared D.; Ojemann, Jeffrey G.; Rao, Rajesh P. N.; Brunton, Bingni W.

    2016-01-01

    Fully automated decoding of human activities and intentions from direct neural recordings is a tantalizing challenge in brain-computer interfacing. Implementing Brain Computer Interfaces (BCIs) outside carefully controlled experiments in laboratory settings requires adaptive and scalable strategies with minimal supervision. Here we describe an unsupervised approach to decoding neural states from naturalistic human brain recordings. We analyzed continuous, long-term electrocorticography (ECoG) data recorded over many days from the brain of subjects in a hospital room, with simultaneous audio and video recordings. We discovered coherent clusters in high-dimensional ECoG recordings using hierarchical clustering and automatically annotated them using speech and movement labels extracted from audio and video. To our knowledge, this represents the first time techniques from computer vision and speech processing have been used for natural ECoG decoding. Interpretable behaviors were decoded from ECoG data, including moving, speaking and resting; the results were assessed by comparison with manual annotation. Discovered clusters were projected back onto the brain revealing features consistent with known functional areas, opening the door to automated functional brain mapping in natural settings. PMID:27148018

  15. Constructivism and the projective assessment of meaning in Rorschach administration.

    PubMed

    Raskin, J D

    2001-08-01

    Constructivist perspectives on the Rorschach are outlined. I discuss ways in which constructivism complements and adds to existing Rorschach methodologies. It is suggested hat the constructivist emphasis on personally and socially constructed meanings is very consistent with many of the ways the Rorschach has been used and resonates with recent emphases on the Rorschach as a representational task. Furthermore, constructivist perspectives on Rorschach also provide an opportunity to supplement Exner's (1993, 1995) efforts to standardize and norm the Rorschach in a way that maintains the instrument's historic and admirable attention to relational elements of assessment and psychotherapy. I present a variety of meaning-based techniques for conducting Rorschach assessment, incorporating both the constructivist and social constructionist perspective.

  16. Environmental Assessment: Winnett School District Boiler Replacement Project

    SciTech Connect

    Not Available

    1994-07-01

    This environmental assessment analyzes the environmental impacts of replacing the Winnett School District complex`s existing oil-fired heating system with a new coal-fired heating system with funds provided from a grant under the Institutional Conservation Program. This Assessment has been prepared in accordance with the provisions of the National Environmental Policy Act (NEPA), the Council on Environmental Quality`s regulations; the Department`s Implementing Procedures and Guidelines Revocation; and the May 1993 ``Recommendations for the Preparation of Environmental Assessments and Environmental Impact Statements,`` by the Department`s Office of NEPA Oversight. Under the Institutional Conservation Programs, created by the National Energy Conservation Policy Act (PL 95--619), the Department is authorized to encourage energy conservation-by providing funding for up to 50 percent of the costs of installation of qualified energy conservation measures by entities such as schools, hospitals, and other buildings owned by local governments. This proposed action to fund partially the installation of a new coal-fired heating system for the Winnett School District is part of this energy conservation program.

  17. The role of assessment infrastructures in crafting project-based science classrooms

    NASA Astrophysics Data System (ADS)

    D'Amico, Laura Marie

    In project-based science teaching, teachers engage students in the practice of conducting meaningful investigations and explanations of natural phenomena, often in collaboration with fellow students or adults. Reformers suggest that this approach can provide students with more profitable learning experiences; but for many teachers, a shift to such instruction can be difficult to manage. As some reform-minded teachers have discovered, classroom assessment can serve as a vital tool for meeting the challenges associated with project science activity. In this research, classroom assessment was viewed as an infrastructure that both students and teachers rely upon as a mediational tool for classroom activity and communications. The study explored the classroom assessment infrastructures created by three teachers involved in the Learning through Collaborative Visualization (CoVis) Project from 1993--94 to 1995--96. Each of the three teachers under study either created a new course or radically reformulated an old one in an effort to incorporate project-based science pedagogy and supporting technologies. Data in the form of interviews, classroom observations, surveys, student work, and teacher records was collected. From these data, an interpretive case study was developed for each course and its accompanying assessment infrastructure. A set of cross-case analyses was also constructed, based upon common themes that emerged from all three cases. These themes included: the assessment challenges based on the nature of project activity, the role of technology in the teachers' assessment infrastructure designs, and the influence of the wider assessment infrastructure on their course and assessment designs. In combination, the case studies and cross-case analyses describe the synergistic relationship between the design of pedagogical reforms and classroom assessment infrastructures, as well as the effectiveness of all three assessment designs. This work contributes to research

  18. The Assessment of Business and Industry Needs. Phase 2 of Multi-County Assessment of Adult Needs Project (MAP).

    ERIC Educational Resources Information Center

    McLennan Community Coll., TX.

    The McLennan Community College Multi-County Needs Assessment Project's (MAP) survey to identify employer needs is discussed in the document. The Business and Industry Survey, one component of MAP, was conducted in the central Texas area (Bosque, Falls, Hill, and McLennan counties) during 1974-1975. Survey development and procedures for its…

  19. Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

    PubMed

    Chen, Zhen-Xia; Sturgill, David; Qu, Jiaxin; Jiang, Huaiyang; Park, Soo; Boley, Nathan; Suzuki, Ana Maria; Fletcher, Anthony R; Plachetzki, David C; FitzGerald, Peter C; Artieri, Carlo G; Atallah, Joel; Barmina, Olga; Brown, James B; Blankenburg, Kerstin P; Clough, Emily; Dasgupta, Abhijit; Gubbala, Sai; Han, Yi; Jayaseelan, Joy C; Kalra, Divya; Kim, Yoo-Ah; Kovar, Christie L; Lee, Sandra L; Li, Mingmei; Malley, James D; Malone, John H; Mathew, Tittu; Mattiuzzo, Nicolas R; Munidasa, Mala; Muzny, Donna M; Ongeri, Fiona; Perales, Lora; Przytycka, Teresa M; Pu, Ling-Ling; Robinson, Garrett; Thornton, Rebecca L; Saada, Nehad; Scherer, Steven E; Smith, Harold E; Vinson, Charles; Warner, Crystal B; Worley, Kim C; Wu, Yuan-Qing; Zou, Xiaoyan; Cherbas, Peter; Kellis, Manolis; Eisen, Michael B; Piano, Fabio; Kionte, Karin; Fitch, David H; Sternberg, Paul W; Cutter, Asher D; Duff, Michael O; Hoskins, Roger A; Graveley, Brenton R; Gibbs, Richard A; Bickel, Peter J; Kopp, Artyom; Carninci, Piero; Celniker, Susan E; Oliver, Brian; Richards, Stephen

    2014-07-01

    Accurate gene model annotation of reference genomes is critical for making them useful. The modENCODE project has improved the D. melanogaster genome annotation by using deep and diverse high-throughput data. Since transcriptional activity that has been evolutionarily conserved is likely to have an advantageous function, we have performed large-scale interspecific comparisons to increase confidence in predicted annotations. To support comparative genomics, we filled in divergence gaps in the Drosophila phylogeny by generating draft genomes for eight new species. For comparative transcriptome analysis, we generated mRNA expression profiles on 81 samples from multiple tissues and developmental stages of 15 Drosophila species, and we performed cap analysis of gene expression in D. melanogaster and D. pseudoobscura. We also describe conservation of four distinct core promoter structures composed of combinations of elements at three positions. Overall, each type of genomic feature shows a characteristic divergence rate relative to neutral models, highlighting the value of multispecies alignment in annotating a target genome that should prove useful in the annotation of other high priority genomes, especially human and other mammalian genomes that are rich in noncoding sequences. We report that the vast majority of elements in the annotation are evolutionarily conserved, indicating that the annotation will be an important springboard for functional genetic testing by the Drosophila community.

  20. Public School Finance Assessment Project Aligned with ELCC Standards

    ERIC Educational Resources Information Center

    Risen, D. Michael

    2008-01-01

    This is a detailed description of an assessment that can be used in a graduate level of study in the area of public school finance. This has been approved by NCATE as meeting all of the stipulated ELCC standards for which it is designed (1.1, 1.2, 1.3, 1.4, 1.5, 2.1, 2.2, 2.3, 2.4, 3.1, 3.2, 3.3, 4.1, 4.2, 4.3, 5.1, 5.2, 5.3.). This course of…

  1. Tritium Facilities Modernization and Consolidation Project Process Waste Assessment (Project S-7726)

    SciTech Connect

    Hsu, R.H.; Oji, L.N.

    1997-11-14

    Under the Tritium Facility Modernization {ampersand} Consolidation (TFM{ampersand}C) Project (S-7726) at the Savannah River Site (SS), all tritium processing operations in Building 232-H, with the exception of extraction and obsolete/abandoned systems, will be reestablished in Building 233-H. These operations include hydrogen isotopic separation, loading and unloading of tritium shipping and storage containers, tritium recovery from zeolite beds, and stripping of nitrogen flush gas to remove tritium prior to stack discharge. The scope of the TFM{ampersand}C Project also provides for a new replacement R&D tritium test manifold in 233-H, upgrading of the 233- H Purge Stripper and 233-H/234-H building HVAC, a new 234-H motor control center equipment building and relocating 232-H Materials Test Facility metallurgical laboratories (met labs), flow tester and life storage program environment chambers to 234-H.

  2. Citizen Participation in Education: Annotated Bibliography.

    ERIC Educational Resources Information Center

    Davies, Don

    The emphasis in this annotated bibliography is citizen participation in education in the areas of decision making, policy development, and school governance. The focus is on the public school and school system rather than on private and parochial schools. One hundred fifty books, parts of books, and published reports are annotated, together with…

  3. Public School Choice: A Selected Annotated Bibliography.

    ERIC Educational Resources Information Center

    Crohn, Leslie; Hansen, Kenneth H.

    This annotated bibliography offers a sampling of a wide variety of viewpoints on the topic of school choice. Fourteen references selected for annotation, ranging from a 3-page journal article to a 266-page book, are listed at the beginning of the bibliography. Among the viewpoints that different authors represent are the following: (1) unlimited…

  4. Assessing the cumulative effects of projects using geographic information systems

    SciTech Connect

    Atkinson, Samuel F.; Canter, Larry W.

    2011-09-15

    Systems that allow users to store and retrieve spatial data, provide for analyses of spatial data, and offer highly detailed display of spatial data are referred to as geographic information systems, or more typically, GIS. Since their initial usage in the 1960s, GISs have evolved as a means of assembling and analyzing diverse data pertaining to specific geographical areas, with spatial locations of the data serving as the organizational basis for the information systems. The structure of GISs is built around spatial identifiers and the methods used to encode data for storage and manipulation. This paper examines how GIS has been used in typical environmental assessment, its use for cumulative impact assessment, and explores litigation that occurred in the United States Federal court system where GIS was used in some aspect of cumulative effects. The paper also summarizes fifteen case studies that range from area wide transportation planning to wildlife and habitat impacts, and draws together a few lessons learned from this review of literature and litigation.

  5. Assisted annotation of medical free text using RapTAT

    PubMed Central

    Gobbel, Glenn T; Garvin, Jennifer; Reeves, Ruth; Cronin, Robert M; Heavirland, Julia; Williams, Jenifer; Weaver, Allison; Jayaramaraja, Shrimalini; Giuse, Dario; Speroff, Theodore; Brown, Steven H; Xu, Hua; Matheny, Michael E

    2014-01-01

    Objective To determine whether assisted annotation using interactive training can reduce the time required to annotate a clinical document corpus without introducing bias. Materials and methods A tool, RapTAT, was designed to assist annotation by iteratively pre-annotating probable phrases of interest within a document, presenting the annotations to a reviewer for correction, and then using the corrected annotations for further machine learning-based training before pre-annotating subsequent documents. Annotators reviewed 404 clinical notes either manually or using RapTAT assistance for concepts related to quality of care during heart failure treatment. Notes were divided into 20 batches of 19–21 documents for iterative annotation and training. Results The number of correct RapTAT pre-annotations increased significantly and annotation time per batch decreased by ∼50% over the course of annotation. Annotation rate increased from batch to batch for assisted but not manual reviewers. Pre-annotation F-measure increased from 0.5 to 0.6 to >0.80 (relative to both assisted reviewer and reference annotations) over the first three batches and more slowly thereafter. Overall inter-annotator agreement was significantly higher between RapTAT-assisted reviewers (0.89) than between manual reviewers (0.85). Discussion The tool reduced workload by decreasing the number of annotations needing to be added and helping reviewers to annotate at an increased rate. Agreement between the pre-annotations and reference standard, and agreement between the pre-annotations and assisted annotations, were similar throughout the annotation process, which suggests that pre-annotation did not introduce bias. Conclusions Pre-annotations generated by a tool capable of interactive training can reduce the time required to create an annotated document corpus by up to 50%. PMID:24431336

  6. Research 1970. An Annotated List of Research and Demonstration Grants 1955-1968.

    ERIC Educational Resources Information Center

    Jackson, Dorothy G., Ed.

    This annotated bibliography of 1,997 projects dated from 1955-1969 and administered by branches of the Social and Rehabilitation Service is divided into four parts: (1) Research and Demonstration Projects which were authorized by the 1954 amendments of the Vocational Rehabilitation Act, listed under 22 subject headings, (2) Cooperative Research or…

  7. Adding Value to Large Multimedia Collections through Annotation Technologies and Tools: Serving Communities of Interest.

    ERIC Educational Resources Information Center

    Shabajee, Paul; Miller, Libby; Dingley, Andy

    A group of research projects based at HP-Labs Bristol, the University of Bristol (England) and ARKive (a new large multimedia database project focused on the worlds biodiversity based in the United Kingdom) are working to develop a flexible model for the indexing of multimedia collections that allows users to annotate content utilizing extensible…

  8. Advanced Flue Gas Desulfurization (AFGD) Demonstration Project, A DOE Assessment

    SciTech Connect

    National Energy Technology Laboratory

    2001-08-31

    The AFGD process as demonstrated by Pure Air at the Bailly Station offers a reliable and cost-effective means of achieving a high degree of SO{sub 2} emissions reduction when burning high-sulfur coals. Many innovative features have been successfully incorporated in this process, and it is ready for widespread commercial use. The system uses a single-loop cocurrent scrubbing process with in-situ oxidation to produce wallboard-grade gypsum instead of wet sludge. A novel wastewater evaporation system minimizes effluents. The advanced scrubbing process uses a common absorber to serve multiple boilers, thereby saving on capital through economies of scale. Major results of the project are: (1) SO{sub 2} removal of over 94 percent was achieved over the three-year demonstration period, with a system availability exceeding 99.5 percent; (2) a large, single absorber handled the combined flue gas of boilers generating 528 MWe of power, and no spares were required; (3) direct injection of pulverized limestone into the absorber was successful; (4) Wastewater evaporation eliminated the need for liquid waste disposal; and (5) the gypsum by-product was used directly for wallboard manufacture, eliminating the need to dispose of waste sludge.

  9. Thermal hydraulic feasibility assessment for the Spent Nuclear Fuel Project

    SciTech Connect

    Heard, F.J.; Cramer, E.R.; Beaver, T.R.; Thurgood, M.J.

    1996-01-01

    A series of scoping analyses have been completed investigating the thermal-hydraulic performance and feasibility of the Spent Nuclear Fuel Project (SNFP) Integrated Process Strategy (IPS). The SNFP was established to develop engineered solutions for the expedited removal, stabilization, and storage of spent nuclear fuel from the K Basins at the U.S. Department of Energy`s Hanford Site in Richland, Washington. The subject efforts focused on independently investigating, quantifying, and establishing the governing heat production and removal mechanisms for each of the IPS operations and configurations, obtaining preliminary results for comparison with and verification of other analyses, and providing technology-based recommendations for consideration and incorporation into the design bases for the SNFP. The goal was to develop a series fo thermal-hydraulic models that could respond to all process and safety-related issues that may arise pertaining to the SNFP. A series of sensitivity analyses were also performed to help identify those parameters that have the greatest impact on energy transfer and hence, temperature control. It is anticipated that the subject thermal-hydraulic models will form the basis for a series of advanced and more detailed models that will more accurately reflect the thermal performance of the IPS and alleviate the necessity for some of the more conservative assumptions and oversimplifications, as well as form the basis for the final process and safety analyses.

  10. A risk-based approach to assess projected yield changes at regional scale

    NASA Astrophysics Data System (ADS)

    Lissner, Tabea; Schleussner, Carl-Friedrich; Mueller, Christoph

    2015-04-01

    Impacts of climate change on agricultural production are likely to negatively affect food security. However, large uncertainties exist in future projections of agricultural yields as well as regional differences in the direction and magnitude of the projected changes. An important question with regard to uncertainties in future crop yield projections is how to translate the modelling range into results meaningful for impact analyses and provide policy-relevant information. One way of addressing this question is to use a risk-based approach, analysing the risk of yield reductions at different levels of temperature increase on the basis of modelling intercomparison data (AgMIP). To assess regional scale differences in yield changes, we look at aggregates of agricultural production within the 26 regions defined in the IPCC SREX report. Using the available output of the AgMIP project, we assess the projected risk of regional yield reductions for maize, rice, wheat and soy at incremental steps of 0.5°C warming. Based on production areas of the year 2000 (MIRCA2000, Portmann, 2011), we assess projected yield changes only within current production areas, thereby excluding potential cropland expansion. Our approach provides an additional view-point to the existing analyses of the output of the AgMIP project. References: Portmann, F.T. (2011): Global estimation of monthly irrigated and rainfed crop areas on a 5 arc-minute grid. Frankfurt Hydrology Paper 09, Institute of Physical Geography, University of Frankfurt, Frankfurt am Main, Germany.

  11. Lesion insertion in projection domain for computed tomography image quality assessment

    NASA Astrophysics Data System (ADS)

    Chen, Baiyu; Ma, Chi; Yu, Zhicong; Leng, Shuai; Yu, Lifeng; McCollough, Cynthia

    2015-03-01

    To perform task-based image quality assessment in CT, it is desirable to have a large number of realistic patient images with known diagnostic truth. One effective way to achieve this objective is to create hybrid images that combine patient images with simulated lesions. Because conventional hybrid images generated in the image-domain fails to reflect the impact of scan and reconstruction parameters on lesion appearance, this study explored a projection-domain approach. Liver lesion models were forward projected according to the geometry of a commercial CT scanner to acquire lesion projections. The lesion projections were then inserted into patient projections (decoded from commercial CT raw data with the assistance of the vendor) and reconstructed to acquire hybrid images. To validate the accuracy of the forward projection geometry, simulated images reconstructed from the forward projections of a digital ACR phantom were compared to physically acquired ACR phantom images. To validate the hybrid images, lesion models were inserted into patient images and visually assessed. Results showed that the simulated phantom images and the physically acquired phantom images had great similarity in terms of HU accuracy and high-contrast resolution. The lesions in the hybrid image had a realistic appearance and merged naturally into the liver background. In addition, the inserted lesion demonstrated reconstruction-parameter-dependent appearance. Compared to conventional image-domain approach, our method enables more realistic hybrid images for image quality assessment.

  12. Waste compatibility assessments to support project W-320

    SciTech Connect

    BLAAK, T.M.

    1999-04-06

    The intent of this internal memo is to provide a recommendation for the transfer of tank 241-C-106 waste, Attachment 2, to tank 241-AY-102. This internal memo also identifies additional requirements which have been deemed necessary for safely receiving and storing the waste documented in Attachment 2 from tank 241-C-106 in tank 241-AY-102. This waste transfer is planned in support of tank 241-C-106 solids sluicing activities. Approximately 200,000 gallons of waste and flush water are expected to be pumped from tank 241-C-106 into tank 241-AY-102. Several transfers will be necessary to complete the sluicing of tank 241-C-106 solids. To assure ourselves that this waste transfer will not create any compatibility concerns, a waste compatibility assessment adhering to current waste compatibility requirements has been performed.

  13. Quantification for Complex Assessment: Uncertainty Estimation in Final Year Project Thesis Assessment

    ERIC Educational Resources Information Center

    Kim, Ho Sung

    2013-01-01

    A quantitative method for estimating an expected uncertainty (reliability and validity) in assessment results arising from the relativity between four variables, viz examiner's expertise, examinee's expertise achieved, assessment task difficulty and examinee's performance, was developed for the complex assessment applicable to final…

  14. Concept annotation in the CRAFT corpus

    PubMed Central

    2012-01-01

    Background Manually annotated corpora are critical for the training and evaluation of automated methods to identify concepts in biomedical text. Results This paper presents the concept annotations of the Colorado Richly Annotated Full-Text (CRAFT) Corpus, a collection of 97 full-length, open-access biomedical journal articles that have been annotated both semantically and syntactically to serve as a research resource for the biomedical natural-language-processing (NLP) community. CRAFT identifies all mentions of nearly all concepts from nine prominent biomedical ontologies and terminologies: the Cell Type Ontology, the Chemical Entities of Biological Interest ontology, the NCBI Taxonomy, the Protein Ontology, the Sequence Ontology, the entries of the Entrez Gene database, and the three subontologies of the Gene Ontology. The first public release includes the annotations for 67 of the 97 articles, reserving two sets of 15 articles for future text-mining competitions (after which these too will be released). Concept annotations were created based on a single set of guidelines, which has enabled us to achieve consistently high interannotator agreement. Conclusions As the initial 67-article release contains more than 560,000 tokens (and the full set more than 790,000 tokens), our corpus is among the largest gold-standard annotated biomedical corpora. Unlike most others, the journal articles that comprise the corpus are drawn from diverse biomedical disciplines and are marked up in their entirety. Additionally, with a concept-annotation count of nearly 100,000 in the 67-article subset (and more than 140,000 in the full collection), the scale of conceptual markup is also among the largest of comparable corpora. The concept annotations of the CRAFT Corpus have the potential to significantly advance biomedical text mining by providing a high-quality gold standard for NLP systems. The corpus, annotation guidelines, and other associated resources are freely available at http

  15. Facilitating functional annotation of chicken microarray data

    PubMed Central

    2009-01-01

    Background Modeling results from chicken microarray studies is challenging for researchers due to little functional annotation associated with these arrays. The Affymetrix GenChip chicken genome array, one of the biggest arrays that serve as a key research tool for the study of chicken functional genomics, is among the few arrays that link gene products to Gene Ontology (GO). However the GO annotation data presented by Affymetrix is incomplete, for example, they do not show references linked to manually annotated functions. In addition, there is no tool that facilitates microarray researchers to directly retrieve functional annotations for their datasets from the annotated arrays. This costs researchers amount of time in searching multiple GO databases for functional information. Results We have improved the breadth of functional annotations of the gene products associated with probesets on the Affymetrix chicken genome array by 45% and the quality of annotation by 14%. We have also identified the most significant diseases and disorders, different types of genes, and known drug targets represented on Affymetrix chicken genome array. To facilitate functional annotation of other arrays and microarray experimental datasets we developed an Array GO Mapper (AGOM) tool to help researchers to quickly retrieve corresponding functional information for their dataset. Conclusion Results from this study will directly facilitate annotation of other chicken arrays and microarray experimental datasets. Researchers will be able to quickly model their microarray dataset into more reliable biological functional information by using AGOM tool. The disease, disorders, gene types and drug targets revealed in the study will allow researchers to learn more about how genes function in complex biological systems and may lead to new drug discovery and development of therapies. The GO annotation data generated will be available for public use via AgBase website and will be updated on regular

  16. Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

    SciTech Connect

    Gupta, Nitin; Tanner, Stephen; Jaitly, Navdeep; Adkins, Joshua N.; Lipton, Mary S.; Edwards, Robert; Romine, Margaret F.; Osterman, Andrei; Bafna, Vineet; Smith, Richard D.; Pevzner, Pavel A.

    2007-09-04

    While bacterial genome annotations have significantly improved in recent years, techniques for bacterial proteome annotation (including post-translational chemical modifications, signal peptides, proteolytic events, etc.) are still in their infancy. At the same time, the number of sequenced bacterial genomes is rising sharply, far outpacing our ability to validate the predicted genes, let alone annotate bacterial proteomes. In this study, we use tandem mass spectrometry (MS/MS) to annotate the proteome of Shewanella oneidensis MR-1, an important microbe for bioremediation. In particular, we provide the first comprehensive map of post-translational modifications in a bacterial genome, including a large number of chemical modifications, signal peptide cleavages and cleavage of N-terminal methionine residues. We also detect multiple genes that were missed or assigned incorrect start positions by gene prediction programs and suggest corrections to improve the gene annotation. This study demonstrates that complementing every genome sequencing project by an MS/MS project would significantly improve both genome and proteome annotations for a reasonable cost.

  17. The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

    PubMed

    Huntemann, Marcel; Ivanova, Natalia N; Mavromatis, Konstantinos; Tripp, H James; Paez-Espino, David; Tennessen, Kristin; Palaniappan, Krishnaveni; Szeto, Ernest; Pillay, Manoj; Chen, I-Min A; Pati, Amrita; Nielsen, Torben; Markowitz, Victor M; Kyrpides, Nikos C

    2016-01-01

    The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provided via the IMG submission site. Users must first define their analysis projects in GOLD and then submit the associated sequence datasets consisting of scaffolds/contigs with optional coverage information and/or unassembled reads in fasta and fastq file formats. The MAP processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNAs, as well as CRISPR elements. Structural annotation is followed by functional annotation including assignment of protein product names and connection to various protein family databases. PMID:26918089

  18. Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

    PubMed Central

    Matthews, Beverley B.; dos Santos, Gilberto; Crosby, Madeline A.; Emmert, David B.; St. Pierre, Susan E.; Gramates, L. Sian; Zhou, Pinglei; Schroeder, Andrew J.; Falls, Kathleen; Strelets, Victor; Russo, Susan M.; Gelbart, William M.

    2015-01-01

    We report the current status of the FlyBase annotated gene set for Drosophila melanogaster and highlight improvements based on high-throughput data. The FlyBase annotated gene set consists entirely of manually annotated gene models, with the exception of some classes of small non-coding RNAs. All gene models have been reviewed using evidence from high-throughput datasets, primarily from the modENCODE project. These datasets include RNA-Seq coverage data, RNA-Seq junction data, transcription start site profiles, and translation stop-codon read-through predictions. New annotation guidelines were developed to take into account the use of the high-throughput data. We describe how this flood of new data was incorporated into thousands of new and revised annotations. FlyBase has adopted a philosophy of excluding low-confidence and low-frequency data from gene model annotations; we also do not attempt to represent all possible permutations for complex and modularly organized genes. This has allowed us to produce a high-confidence, manageable gene annotation dataset that is available at FlyBase (http://flybase.org). Interesting aspects of new annotations include new genes (coding, non-coding, and antisense), many genes with alternative transcripts with very long 3′ UTRs (up to 15–18 kb), and a stunning mismatch in the number of male-specific genes (approximately 13% of all annotated gene models) vs. female-specific genes (less than 1%). The number of identified pseudogenes and mutations in the sequenced strain also increased significantly. We discuss remaining challenges, for instance, identification of functional small polypeptides and detection of alternative translation starts. PMID:26109357

  19. Solar Technology Assessment Project. Volume VII. A review of OTEC

    SciTech Connect

    Yuen, P.C.

    1981-04-01

    The Ocean Thermal Energy Conversion (OTEC) principle is discussed along with general system and cycle types, specific OTEC designs, applications, and the ocean thermal resource. the historic development and present status of OTEC are reviewed. Power system components of the more technically advanced closed-cycle OTEC concept are discussed: heat exchangers, corrosion and biofouling countermeasures, working fluids, ammonia power systems, and on-platform seawater sytems. Several open-cycle features are also discussed. A critical review of the ocean engineering aspects of the OTEC power system is presented. Major subsystems such as platform, cold water pipe, mooring system, dynamic positioning system and power transmission cable system are assessed for their relationships with the ocean environment and with each other. Nine available studies of OTEC costs are reviewed, and tentative comparisons are made between OTEC and traditional fuel costs. OTEC products and markets are considered. Possible environmental and social effects of OTEC development are discussed. International and national laws regulating OTEC plants are reviewed, specifically, the United Nations Third Conference on the Law of the Sea and the Ocean Thermal Energy Conversion Act of 1980. Coast Guard regulations, OSHA laws, and state and local government regulations are also considered as well as attitudes of the utilities. (LEW)

  20. Test Area North Pool Stabilization Project: Environmental assessment

    SciTech Connect

    1996-05-01

    The Test Area North (TAN) Pool is located within the fenced TAN facility boundaries on the Idaho National Engineering Laboratory (INEL). The TAN pool stores 344 canisters of core debris from the March, 1979, Three Mile Island (TMI) Unit 2 reactor accident; fuel assemblies from Loss-of-Fluid Tests (LOFT); and Government-owned commercial fuel rods and assemblies. The LOFT and government owned commercial fuel rods and assemblies are hereafter referred to collectively as {open_quotes}commercial fuels{close_quotes} except where distinction between the two is important to the analysis. DOE proposes to remove the canisters of TMI core debris and commercial fuels from the TAN Pool and transfer them to the Idaho Chemical Processing Plant (ICPP) for interim dry storage until an alternate storage location other than at the INEL, or a permanent federal spent nuclear fuel (SNF) repository is available. The TAN Pool would be drained and placed in an industrially and radiologically safe condition for refurbishment or eventual decommissioning. This environmental assessment (EA) identifies and evaluates environmental impacts associated with (1) constructing an Interim Storage System (ISS) at ICPP; (2) removing the TMI and commercial fuels from the pool and transporting them to ICPP for placement in an ISS, and (3) draining and stabilizing the TAN Pool. Miscellaneous hardware would be removed and decontaminated or disposed of in the INEL Radioactive Waste Management Complex (RWMC). This EA also describes the environmental consequences of the no action alternative.

  1. Holistic assessment of a landfill mining pilot project in Austria: Methodology and application.

    PubMed

    Hermann, Robert; Baumgartner, Rupert J; Vorbach, Stefan; Wolfsberger, Tanja; Ragossnig, Arne; Pomberger, Roland

    2016-07-01

    Basic technical and economic examinations of Austrian mass waste landfills, concerning the recovery of secondary raw materials, have been carried out by the 'LAMIS - Landfill Mining Austria' pilot project for the first time in Austria. A main focus of the research - the subject of this article - was the first devotion of a pilot landfill to an integrated ecological and economic assessment so that its feasibility could be verified before a landfill mining project commenced. A Styrian mass waste landfill had been chosen for this purpose that had been put into operation in 1979 and received mechanically-biologically pre-treated municipal waste till 2012. The whole assessment procedure was divided into preliminary and main assessment phases to evaluate the general suitability of a landfill mining project with little financial and human resource expense. A portfolio chart, based on a questionnaire, was created for the preliminary assessment that, as a result, has provided a recommendation for subsequent investigation - the main assessment phase. In this case, specific economic criteria were assessed by net present value calculation, while ecological or socio-economic criteria were rated by utility analysis, transferring the result into a utility-net present value chart. In the case of the examined pilot landfill, assessing the landfill mining project produced a higher utility but a lower net present value than a landfill leaving-in for aftercare. Since no clearly preferable scenario could be identified this way, a cost-revenue analysis was carried out in addition that determined a dimensionless ratio: the 'utility - net present value quotient' of both scenarios. Comparing this quotient showed unmistakably that in the overall assessment, 'leaving the landfill in aftercare' was preferable to a 'landfill mining project' in that specific case. PMID:27170192

  2. Holistic assessment of a landfill mining pilot project in Austria: Methodology and application.

    PubMed

    Hermann, Robert; Baumgartner, Rupert J; Vorbach, Stefan; Wolfsberger, Tanja; Ragossnig, Arne; Pomberger, Roland

    2016-07-01

    Basic technical and economic examinations of Austrian mass waste landfills, concerning the recovery of secondary raw materials, have been carried out by the 'LAMIS - Landfill Mining Austria' pilot project for the first time in Austria. A main focus of the research - the subject of this article - was the first devotion of a pilot landfill to an integrated ecological and economic assessment so that its feasibility could be verified before a landfill mining project commenced. A Styrian mass waste landfill had been chosen for this purpose that had been put into operation in 1979 and received mechanically-biologically pre-treated municipal waste till 2012. The whole assessment procedure was divided into preliminary and main assessment phases to evaluate the general suitability of a landfill mining project with little financial and human resource expense. A portfolio chart, based on a questionnaire, was created for the preliminary assessment that, as a result, has provided a recommendation for subsequent investigation - the main assessment phase. In this case, specific economic criteria were assessed by net present value calculation, while ecological or socio-economic criteria were rated by utility analysis, transferring the result into a utility-net present value chart. In the case of the examined pilot landfill, assessing the landfill mining project produced a higher utility but a lower net present value than a landfill leaving-in for aftercare. Since no clearly preferable scenario could be identified this way, a cost-revenue analysis was carried out in addition that determined a dimensionless ratio: the 'utility - net present value quotient' of both scenarios. Comparing this quotient showed unmistakably that in the overall assessment, 'leaving the landfill in aftercare' was preferable to a 'landfill mining project' in that specific case.

  3. Solar Resource & Meteorological Assessment Project (SOLRMAP): Rotating Shadowband Radiometer (RSR); Cedar City, Utah (Data)

    DOE Data Explorer

    Wilcox, S.; Andreas, A.

    2010-07-13

    The U.S. Department of Energy's National Renewable Energy Laboratory collaborates with the solar industry to establish high quality solar and meteorological measurements. This Solar Resource and Meteorological Assessment Project (SOLRMAP) provides high quality measurements to support deployment of power projects in the United States. The no-funds-exchanged collaboration brings NREL solar resource assessment expertise together with industry needs for measurements. The end result is high quality data sets to support the financing, design, and monitoring of large scale solar power projects for industry in addition to research-quality data for NREL model development. NREL provides consultation for instrumentation and station deployment, along with instrument calibrations, data acquisition, quality assessment, data distribution, and summary reports. Industry participants provide equipment, infrastructure, and station maintenance.

  4. Solar Resource & Meteorological Assessment Project (SOLRMAP): Sun Spot Two; Swink, Colorado (Data)

    DOE Data Explorer

    Wilcox, S.; Andreas, A.

    2010-11-10

    The U.S. Department of Energy's National Renewable Energy Laboratory collaborates with the solar industry to establish high quality solar and meteorological measurements. This Solar Resource and Meteorological Assessment Project (SOLRMAP) provides high quality measurements to support deployment of power projects in the United States. The no-funds-exchanged collaboration brings NREL solar resource assessment expertise together with industry needs for measurements. The end result is high quality data sets to support the financing, design, and monitoring of large scale solar power projects for industry in addition to research-quality data for NREL model development. NREL provides consultation for instrumentation and station deployment, along with instrument calibrations, data acquisition, quality assessment, data distribution, and summary reports. Industry participants provide equipment, infrastructure, and station maintenance.

  5. Solar Resource & Meteorological Assessment Project (SOLRMAP): Rotating Shadowband Radiometer (RSR); Kalaeloa Oahu, Hawaii (Data)

    DOE Data Explorer

    Wilcox, S.; Andreas, A.

    2010-03-16

    The U.S. Department of Energy's National Renewable Energy Laboratory collaborates with the solar industry to establish high quality solar and meteorological measurements. This Solar Resource and Meteorological Assessment Project (SOLRMAP) provides high quality measurements to support deployment of power projects in the United States. The no-funds-exchanged collaboration brings NREL solar resource assessment expertise together with industry needs for measurements. The end result is high quality data sets to support the financing, design, and monitoring of large scale solar power projects for industry in addition to research-quality data for NREL model development. NREL provides consultation for instrumentation and station deployment, along with instrument calibrations, data acquisition, quality assessment, data distribution, and summary reports. Industry participants provide equipment, infrastructure, and station maintenance.

  6. Solar Resource & Meteorological Assessment Project (SOLRMAP): Rotating Shadowband Radiometer (RSR); Milford, Utah (Data)

    DOE Data Explorer

    Wilcox, S.; Andreas, A.

    2010-07-14

    The U.S. Department of Energy's National Renewable Energy Laboratory collaborates with the solar industry to establish high quality solar and meteorological measurements. This Solar Resource and Meteorological Assessment Project (SOLRMAP) provides high quality measurements to support deployment of power projects in the United States. The no-funds-exchanged collaboration brings NREL solar resource assessment expertise together with industry needs for measurements. The end result is high quality data sets to support the financing, design, and monitoring of large scale solar power projects for industry in addition to research-quality data for NREL model development. NREL provides consultation for instrumentation and station deployment, along with instrument calibrations, data acquisition, quality assessment, data distribution, and summary reports. Industry participants provide equipment, infrastructure, and station maintenance.

  7. Solar Resource & Meteorological Assessment Project (SOLRMAP): Observed Atmospheric and Solar Information System (OASIS); Tucson, Arizona (Data)

    DOE Data Explorer

    Wilcox, S.; Andreas, A.

    2010-11-03

    The U.S. Department of Energy's National Renewable Energy Laboratory collaborates with the solar industry to establish high quality solar and meteorological measurements. This Solar Resource and Meteorological Assessment Project (SOLRMAP) provides high quality measurements to support deployment of power projects in the United States. The no-funds-exchanged collaboration brings NREL solar resource assessment expertise together with industry needs for measurements. The end result is high quality data sets to support the financing, design, and monitoring of large scale solar power projects for industry in addition to research-quality data for NREL model development. NREL provides consultation for instrumentation and station deployment, along with instrument calibrations, data acquisition, quality assessment, data distribution, and summary reports. Industry participants provide equipment, infrastructure, and station maintenance.

  8. Solar Resource & Meteorological Assessment Project (SOLRMAP): Rotating Shadowband Radiometer (RSR); La Ola Lanai, Hawaii (Data)

    DOE Data Explorer

    Wilcox, S.; Andreas, A.

    2009-07-22

    The U.S. Department of Energy's National Renewable Energy Laboratory collaborates with the solar industry to establish high quality solar and meteorological measurements. This Solar Resource and Meteorological Assessment Project (SOLRMAP) provides high quality measurements to support deployment of power projects in the United States. The no-funds-exchanged collaboration brings NREL solar resource assessment expertise together with industry needs for measurements. The end result is high quality data sets to support the financing, design, and monitoring of large scale solar power projects for industry in addition to research-quality data for NREL model development. NREL provides consultation for instrumentation and station deployment, along with instrument calibrations, data acquisition, quality assessment, data distribution, and summary reports. Industry participants provide equipment, infrastructure, and station maintenance.

  9. Solar Resource & Meteorological Assessment Project (SOLRMAP): Rotating Shadowband Radiometer (RSR); Los Angeles, California (Data)

    DOE Data Explorer

    Stoffel, T.; Andreas, A.

    2010-04-26

    The U.S. Department of Energy's National Renewable Energy Laboratory collaborates with the solar industry to establish high quality solar and meteorological measurements. This Solar Resource and Meteorological Assessment Project (SOLRMAP) provides high quality measurements to support deployment of power projects in the United States. The no-funds-exchanged collaboration brings NREL solar resource assessment expertise together with industry needs for measurements. The end result is high quality data sets to support the financing, design, and monitoring of large scale solar power projects for industry in addition to research-quality data for NREL model development. NREL provides consultation for instrumentation and station deployment, along with instrument calibrations, data acquisition, quality assessment, data distribution, and summary reports. Industry participants provide equipment, infrastructure, and station maintenance.

  10. Hidden Markov model and nuisance attribute projection based bearing performance degradation assessment

    NASA Astrophysics Data System (ADS)

    Jiang, Huiming; Chen, Jin; Dong, Guangming

    2016-05-01

    Hidden Markov model (HMM) has been widely applied in bearing performance degradation assessment. As a machine learning-based model, its accuracy, subsequently, is dependent on the sensitivity of the features used to estimate the degradation performance of bearings. It's a big challenge to extract effective features which are not influenced by other qualities or attributes uncorrelated with the bearing degradation condition. In this paper, a bearing performance degradation assessment method based on HMM and nuisance attribute projection (NAP) is proposed. NAP can filter out the effect of nuisance attributes in feature space through projection. The new feature space projected by NAP is more sensitive to bearing health changes and barely influenced by other interferences occurring in operation condition. To verify the effectiveness of the proposed method, two different experimental databases are utilized. The results show that the combination of HMM and NAP can effectively improve the accuracy and robustness of the bearing performance degradation assessment system.

  11. Summary results of an assessment of research projects in the superconductivity for electric power systems program

    SciTech Connect

    1992-10-01

    The Office of Program Analysis undertook an assessment of 37 research projects sponsored by the High Temperature Superconductivity Program. This report summarizes the results of the review. Rating factors included scientific and technical merit, mission relevance, appropriateness and level of innovation, quality of project team, productivity, and probable impact on the program`s mission. Some research needs and opportunities are described that were identified by the reviewers in the areas of wire development, deposited film technology, and systems development.

  12. 41 CFR 102-80.75 - Who assesses environmental issues in Federal construction and lease construction projects?

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... environmental issues in Federal construction and lease construction projects? 102-80.75 Section 102-80.75 Public... construction and lease construction projects? Federal agencies must assess required environmental issues throughout planning and project development so that the environmental impacts of a project are...

  13. 41 CFR 102-80.75 - Who assesses environmental issues in Federal construction and lease construction projects?

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... environmental issues in Federal construction and lease construction projects? 102-80.75 Section 102-80.75 Public... construction and lease construction projects? Federal agencies must assess required environmental issues throughout planning and project development so that the environmental impacts of a project are...

  14. 41 CFR 102-80.75 - Who assesses environmental issues in Federal construction and lease construction projects?

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... environmental issues in Federal construction and lease construction projects? 102-80.75 Section 102-80.75 Public... construction and lease construction projects? Federal agencies must assess required environmental issues throughout planning and project development so that the environmental impacts of a project are...

  15. 41 CFR 102-80.75 - Who assesses environmental issues in Federal construction and lease construction projects?

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... environmental issues in Federal construction and lease construction projects? 102-80.75 Section 102-80.75 Public... construction and lease construction projects? Federal agencies must assess required environmental issues throughout planning and project development so that the environmental impacts of a project are...

  16. Environmental impact assessments of the Three Gorges Project in China: Issues and interventions

    NASA Astrophysics Data System (ADS)

    Xu, Xibao; Tan, Yan; Yang, Guishan

    2013-09-01

    The paper takes China's authoritative Environmental Impact Statement for the Yangzi (Yangtze) Three Gorges Project (TGP) in 1992 as a benchmark against which to evaluate emerging major environmental outcomes since the initial impoundment of the Three Gorges reservoir in 2003. The paper particularly examines five crucial environmental aspects and associated causal factors. The five domains include human resettlement and the carrying capacity of local environments (especially land), water quality, reservoir sedimentation and downstream riverbed erosion, soil erosion, and seismic activity and geological hazards. Lessons from the environmental impact assessments of the TGP are: (1) hydro project planning needs to take place at a broader scale, and a strategic environmental assessment at a broader scale is necessary in advance of individual environmental impact assessments; (2) national policy and planning adjustments need to react quickly to the impact changes of large projects; (3) long-term environmental monitoring systems and joint operations with other large projects in the upstream areas of a river basin should be established, and the cross-impacts of climate change on projects and possible impacts of projects on regional or local climate considered.

  17. Bayesian-network-based safety risk assessment for steel construction projects.

    PubMed

    Leu, Sou-Sen; Chang, Ching-Miao

    2013-05-01

    There are four primary accident types at steel building construction (SC) projects: falls (tumbles), object falls, object collapse, and electrocution. Several systematic safety risk assessment approaches, such as fault tree analysis (FTA) and failure mode and effect criticality analysis (FMECA), have been used to evaluate safety risks at SC projects. However, these traditional methods ineffectively address dependencies among safety factors at various levels that fail to provide early warnings to prevent occupational accidents. To overcome the limitations of traditional approaches, this study addresses the development of a safety risk-assessment model for SC projects by establishing the Bayesian networks (BN) based on fault tree (FT) transformation. The BN-based safety risk-assessment model was validated against the safety inspection records of six SC building projects and nine projects in which site accidents occurred. The ranks of posterior probabilities from the BN model were highly consistent with the accidents that occurred at each project site. The model accurately provides site safety-management abilities by calculating the probabilities of safety risks and further analyzing the causes of accidents based on their relationships in BNs. In practice, based on the analysis of accident risks and significant safety factors, proper preventive safety management strategies can be established to reduce the occurrence of accidents on SC sites.

  18. National assessment of oil and gas project; petroleum systems and assessment of the South Florida Basin

    USGS Publications Warehouse

    Pollastro, R. M.; Schenk, C.J.

    2001-01-01

    This CD-ROM contains coverages that define and outline the geographic boundaries of petroleum systems and assessment units and text that describes the geology and reasoning to support the assessment of undiscovered oil and gas resources in the South Florida Basin for a forecast period of 30 years. This assessment was performed by using the best geological information and scientific theory available to the USGS; however, the USGS did not have access to seismic survey data for the South Florida Basin.

  19. Summary results of an assessment of research projects in the national photovoltaics program

    NASA Astrophysics Data System (ADS)

    1990-03-01

    The Photovoltaics Technology Division of the Department of Energy (DOE) is responsible for the management of the National Photovoltaics (PV) Program. This program sponsors research and development in photovoltaics energy technology. The program is designed to facilitate accumulation of a base of scientific and technical data and experience from which private enterprise can choose options for further development and competitive application in electrical markets in the United States. At request of the Director, Photovoltaics Technology Division, the Office Program Analysis (OPA) undertook an assessment of 129 projects managed by his Division. The primary objective of the assessment was to obtain a measure of the quality of the research or development in each project. Each panel consisted of five to eight scientific or technical reviewers collectively knowledgeable in all of the photovoltaics energy technology areas touched on by the projects being assessed. The purpose of this assessment was to obtain sufficient information for DOE managers to determine the following: what quality research sponsored by the Photovoltaics Technology Division, is represented by its individual projects; what the impact of individual projects is within the Photovoltaic Technology Division on the mission of Solar Renewables; and what the priority research targets and opportunities for future sponsorship are.

  20. Lower Yakima Valley Wetlands and Riparian Restoration Project. Final Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration

    1994-10-01

    Bonneville Power Administration (BPA) proposes to fund that portion of the Washington Wildlife Mitigation Agreement pertaining to the Lower Yakima Valley Wetlands and Riparian Restoration Project (Project) in a cooperative effort with the Yakama Indian Nation and the Bureau of Indian Affairs (BIA). The proposed action would allow the sponsors to secure property and conduct wildlife management activities for the Project within the boundaries of the Yakama Indian Reservation. This Environmental Assessment examines the potential environmental effects of acquiring and managing property for wildlife and wildlife habitat within a large 20, 340 hectare (50, 308 acre) project area. As individual properties are secured for the Project, three site-specific activities (habitat enhancement, operation and maintenance, and monitoring and evaluation) may be subject to further site-specific environmental review. All required Federal/Tribal coordination, permits and/or approvals would be obtained prior to ground disturbing activities.

  1. Bayer Polymers: Plant Identifies Numerous Projects Following Plant-Wide Energy-Efficient Assessment

    SciTech Connect

    2003-08-01

    The Bayer Corporation undertook a plant-wide energy efficiency assessment of its New Martinsville, West Virginia, plant in 2001. The objectives were to identify energy saving projects in the utilities area. The projects, when complete, will save the company the loss of an estimated 236,000 MMBtu ($1.16 million) annually in energy from burning and leaking fossil fuels. Certain other projects will save the company 6,300,000 kWh ($219,000) of electrical energy each year. All of the projects could be duplicated in other chemical manufacturing facilities and most of the projects could be duplicated in other industries utilizing steam, pumps, and/or compressed air.

  2. Evaluation and selection of decision-making methods to assess landfill mining projects.

    PubMed

    Hermann, Robert; Baumgartner, Rupert J; Vorbach, Stefan; Ragossnig, Arne; Pomberger, Roland

    2015-09-01

    For the first time in Austria, fundamental technological and economic studies on recovering secondary raw materials from large landfills have been carried out, based on the 'LAMIS - Landfill Mining Austria' pilot project. A main focus of the research - and the subject of this article - was to develop an assessment or decision-making procedure that allows landfill owners to thoroughly examine the feasibility of a landfill mining project in advance. Currently there are no standard procedures that would sufficiently cover all the multiple-criteria requirements. The basic structure of the multiple attribute decision making process was used to narrow down on selection, conceptual design and assessment of suitable procedures. Along with a breakdown into preliminary and main assessment, the entire foundation required was created, such as definitions of requirements to an assessment method, selection and accurate description of the various assessment criteria and classification of the target system for the present 'landfill mining' vs. 'retaining the landfill in after-care' decision-making problem. Based on these studies, cost-utility analysis and the analytical-hierarchy process were selected from the range of multiple attribute decision-making procedures and examined in detail. Overall, both methods have their pros and cons with regard to their use for assessing landfill mining projects. Merging these methods or connecting them with single-criteria decision-making methods (like the net present value method) may turn out to be reasonable and constitute an appropriate assessment method.

  3. Evaluation and selection of decision-making methods to assess landfill mining projects.

    PubMed

    Hermann, Robert; Baumgartner, Rupert J; Vorbach, Stefan; Ragossnig, Arne; Pomberger, Roland

    2015-09-01

    For the first time in Austria, fundamental technological and economic studies on recovering secondary raw materials from large landfills have been carried out, based on the 'LAMIS - Landfill Mining Austria' pilot project. A main focus of the research - and the subject of this article - was to develop an assessment or decision-making procedure that allows landfill owners to thoroughly examine the feasibility of a landfill mining project in advance. Currently there are no standard procedures that would sufficiently cover all the multiple-criteria requirements. The basic structure of the multiple attribute decision making process was used to narrow down on selection, conceptual design and assessment of suitable procedures. Along with a breakdown into preliminary and main assessment, the entire foundation required was created, such as definitions of requirements to an assessment method, selection and accurate description of the various assessment criteria and classification of the target system for the present 'landfill mining' vs. 'retaining the landfill in after-care' decision-making problem. Based on these studies, cost-utility analysis and the analytical-hierarchy process were selected from the range of multiple attribute decision-making procedures and examined in detail. Overall, both methods have their pros and cons with regard to their use for assessing landfill mining projects. Merging these methods or connecting them with single-criteria decision-making methods (like the net present value method) may turn out to be reasonable and constitute an appropriate assessment method. PMID:26123349

  4. Making web annotations persistent over time

    SciTech Connect

    Sanderson, Robert; Van De Sompel, Herbert

    2010-01-01

    As Digital Libraries (DL) become more aligned with the web architecture, their functional components need to be fundamentally rethought in terms of URIs and HTTP. Annotation, a core scholarly activity enabled by many DL solutions, exhibits a clearly unacceptable characteristic when existing models are applied to the web: due to the representations of web resources changing over time, an annotation made about a web resource today may no longer be relevant to the representation that is served from that same resource tomorrow. We assume the existence of archived versions of resources, and combine the temporal features of the emerging Open Annotation data model with the capability offered by the Memento framework that allows seamless navigation from the URI of a resource to archived versions of that resource, and arrive at a solution that provides guarantees regarding the persistence of web annotations over time. More specifically, we provide theoretical solutions and proof-of-concept experimental evaluations for two problems: reconstructing an existing annotation so that the correct archived version is displayed for all resources involved in the annotation, and retrieving all annotations that involve a given archived version of a web resource.

  5. Integrating Assessment and Research Strategies on a Large Development and Research Project: Kids as Airborne Mission Scientists (KaAMS).

    ERIC Educational Resources Information Center

    Grabowski, Barbara L.; Koszalka, Tiffany A.

    Combining assessment and research components on a large development and research project is a complex task. There are many descriptions of how either assessment or research should be conducted, but detailed examples illustrating integration of such strategies in complex projects are scarce. This paper provides definitions of assessment,…

  6. Phase III Technology for All Americans Project: Creating Assessment, Professional Development, and Program Standards for Technological Literacy.

    ERIC Educational Resources Information Center

    Dugger, William E., Jr.

    2001-01-01

    The goals of Phase III of the Technology for All Americans Project are to develop student assessment standards, professional development standards, program standards, and effective leaders. The project is based on the Standards for Technology Literacy, a NASA initiative. (JOW)

  7. The Accuracy and Reliability of Crowdsource Annotations of Digital Retinal Images

    PubMed Central

    Mitry, Danny; Zutis, Kris; Dhillon, Baljean; Peto, Tunde; Hayat, Shabina; Khaw, Kay-Tee; Morgan, James E.; Moncur, Wendy; Trucco, Emanuele; Foster, Paul J.

    2016-01-01

    Purpose Crowdsourcing is based on outsourcing computationally intensive tasks to numerous individuals in the online community who have no formal training. Our aim was to develop a novel online tool designed to facilitate large-scale annotation of digital retinal images, and to assess the accuracy of crowdsource grading using this tool, comparing it to expert classification. Methods We used 100 retinal fundus photograph images with predetermined disease criteria selected by two experts from a large cohort study. The Amazon Mechanical Turk Web platform was used to drive traffic to our site so anonymous workers could perform a classification and annotation task of the fundus photographs in our dataset after a short training exercise. Three groups were assessed: masters only, nonmasters only and nonmasters with compulsory training. We calculated the sensitivity, specificity, and area under the curve (AUC) of receiver operating characteristic (ROC) plots for all classifications compared to expert grading, and used the Dice coefficient and consensus threshold to assess annotation accuracy. Results In total, we received 5389 annotations for 84 images (excluding 16 training images) in 2 weeks. A specificity and sensitivity of 71% (95% confidence interval [CI], 69%–74%) and 87% (95% CI, 86%–88%) was achieved for all classifications. The AUC in this study for all classifications combined was 0.93 (95% CI, 0.91–0.96). For image annotation, a maximal Dice coefficient (∼0.6) was achieved with a consensus threshold of 0.25. Conclusions This study supports the hypothesis that annotation of abnormalities in retinal images by ophthalmologically naive individuals is comparable to expert annotation. The highest AUC and agreement with expert annotation was achieved in the nonmasters with compulsory training group. Translational Relevance The use of crowdsourcing as a technique for retinal image analysis may be comparable to expert graders and has the potential to deliver

  8. The Accuracy and Reliability of Crowdsource Annotations of Digital Retinal Images

    PubMed Central

    Mitry, Danny; Zutis, Kris; Dhillon, Baljean; Peto, Tunde; Hayat, Shabina; Khaw, Kay-Tee; Morgan, James E.; Moncur, Wendy; Trucco, Emanuele; Foster, Paul J.

    2016-01-01

    Purpose Crowdsourcing is based on outsourcing computationally intensive tasks to numerous individuals in the online community who have no formal training. Our aim was to develop a novel online tool designed to facilitate large-scale annotation of digital retinal images, and to assess the accuracy of crowdsource grading using this tool, comparing it to expert classification. Methods We used 100 retinal fundus photograph images with predetermined disease criteria selected by two experts from a large cohort study. The Amazon Mechanical Turk Web platform was used to drive traffic to our site so anonymous workers could perform a classification and annotation task of the fundus photographs in our dataset after a short training exercise. Three groups were assessed: masters only, nonmasters only and nonmasters with compulsory training. We calculated the sensitivity, specificity, and area under the curve (AUC) of receiver operating characteristic (ROC) plots for all classifications compared to expert grading, and used the Dice coefficient and consensus threshold to assess annotation accuracy. Results In total, we received 5389 annotations for 84 images (excluding 16 training images) in 2 weeks. A specificity and sensitivity of 71% (95% confidence interval [CI], 69%–74%) and 87% (95% CI, 86%–88%) was achieved for all classifications. The AUC in this study for all classifications combined was 0.93 (95% CI, 0.91–0.96). For image annotation, a maximal Dice coefficient (∼0.6) was achieved with a consensus threshold of 0.25. Conclusions This study supports the hypothesis that annotation of abnormalities in retinal images by ophthalmologically naive individuals is comparable to expert annotation. The highest AUC and agreement with expert annotation was achieved in the nonmasters with compulsory training group. Translational Relevance The use of crowdsourcing as a technique for retinal image analysis may be comparable to expert graders and has the potential to deliver

  9. Annotating user-defined abstractions for optimization

    SciTech Connect

    Quinlan, D; Schordan, M; Vuduc, R; Yi, Q

    2005-12-05

    This paper discusses the features of an annotation language that we believe to be essential for optimizing user-defined abstractions. These features should capture semantics of function, data, and object-oriented abstractions, express abstraction equivalence (e.g., a class represents an array abstraction), and permit extension of traditional compiler optimizations to user-defined abstractions. Our future work will include developing a comprehensive annotation language for describing the semantics of general object-oriented abstractions, as well as automatically verifying and inferring the annotated semantics.

  10. Maine Exhibitions Assessment Project, September 2002-June 2004. Technical Criteria for Including Exhibition Assessments in Comprehensive Local Assessment Systems. Revised.

    ERIC Educational Resources Information Center

    Maine Department of Education, 2004

    2004-01-01

    In September 2002, the Maine Department of Education began organizing an Exhibition Assessment Advisory Committee whose purpose it was to consider meaningful ways to include exhibition assessments in comprehensive local assessment systems. School administrators were invited to participate and/or nominate practitioners in their districts to become…

  11. Assessment in the Context of Mathematics Instruction Reform: The Design of Assessment in the QUASAR Project.

    ERIC Educational Resources Information Center

    Silver, Edward A.; Lane, Suzanne

    Recent reports on mathematics education reform have focused the attention of educational practitioners and policymakers on new goals for mathematics education and new descriptions of mathematical proficiency. QUASAR is a national project (Quantitative Understanding: Amplifying Student Achievement and Reasoning) designed to improve the mathematics…

  12. Using "EC-Assess" to Assess a Small Biofuels Project in Honduras

    ERIC Educational Resources Information Center

    Ngassa, Franklin Chamda

    2010-01-01

    Biofuels may contribute to both rural economic development and climate change mitigation and adaptation. The Gota Verde Project in Yoro, Honduras, attempts to demonstrate the technical and economic feasibility of small-scale biofuel production for local use by implementing a distinctive approach to feedstock production that encourages small farm…

  13. Social impact assessment in mining projects in Northern Finland: Comparing practice to theory

    SciTech Connect

    Suopajärvi, Leena

    2013-09-15

    The paper discusses social impact assessments (SIA) for mining projects in light of the international principles and guidelines for such assessments and the academic literature in the field. The data consist of environmental impact assessment (EIA) programmes and reports for six mining projects that have started up in northern Finland in the 2000s. A first observation is that the role of the SIAs in the EIA programmes and reports studied was quite minor: measured in number of pages, the assessments account for three or four percent of the total. This study analyses the data collection, research methodology and conceptual premises used in the SIAs. It concludes that the assessments do not fully meet the high standards of the international principles and guidelines set out for them: for example, elderly men are over-represented in the data and no efforts were made to identify and bring to the fore vulnerable groups. Moreover, the reliability of the assessments is difficult to gauge, because the qualitative methods are not described and where quantitative methods were used, details such as non-response rates to questionnaires are not discussed. At the end of the paper, the SIAs are discussed in terms of Jürgen Habermas' theory of knowledge interests, with the conclusion that the assessments continue the empirical analytical tradition of the social sciences and exhibit a technical knowledge interest. -- Highlights: • Paper investigates social impact assessments in Finnish mining projects. • Role of social impact assessment is minor in whole EIA-process. • Mining SIAs give the voice for elderly men, vulnerable groups are not identified. • Assessment of SIAs is difficult because of lacking transparency in reporting. • SIAs belong to empirical analytical tradition with technical knowledge interest.

  14. Meeting CCS communication challenges head-on: Integrating communications, planning, risk assessment, and project management

    USGS Publications Warehouse

    Greenberg, S.; Gauvreau, L.; Hnottavange-Telleen, K.; Finley, R.; Marsteller, S.

    2011-01-01

    The Midwest Geological Sequestration Consortium, Schlumberger Carbon Services, and Archer Daniels Midland has implemented a comprehensive communications plan at the Illinois Basin - Decatur Project (IBDP), a one million metric tonne Carbon Capture and Storage project in Decatur, IL, USA funded by the U.S. Department of Energy's National Energy Technology Laboratory. The IBDP Communication Plan includes consortium information, funding and disclaimer citations, description of target audiences, media communications guidelines, paper and presentations guidelines, site visit information, crisis communication, on-site photography regulations, and other components. The creation, development, and implementation processes for the IBDP Communication Plan (the Plan) are shared in this paper. New communications challenges, such as how to address add-on research requests, data sharing and management, scope increase, and contract agreements have arisen since the Plan was completed in January 2009, resulting in development of new policies and procedures by project management. Integrating communications planning, risk assessment, and project management ensured that consistent, factual information was developed and incorporated into project planning, and constitutes the basis of public communications. Successful integration has allowed the IBDP to benefit from early identification and mitigation of the potential project risks, which allows more time to effectively deal with unknown and unidentified risks that may arise. Project risks and risks associated with public perception can be managed through careful planning and integration of communication strategies into project management and risk mitigation. ?? 2011 Published by Elsevier Ltd.

  15. Waste management project's alternatives: A risk-based multi-criteria assessment (RBMCA) approach

    SciTech Connect

    Karmperis, Athanasios C.; Sotirchos, Anastasios; Aravossis, Konstantinos; Tatsiopoulos, Ilias P.

    2012-01-15

    Highlights: Black-Right-Pointing-Pointer We examine the evaluation of a waste management project's alternatives. Black-Right-Pointing-Pointer We present a novel risk-based multi-criteria assessment (RBMCA) approach. Black-Right-Pointing-Pointer In the RBMCA the evaluation criteria are based on the quantitative risk analysis of the project's alternatives. Black-Right-Pointing-Pointer Correlation between the criteria weight values and the decision makers' risk preferences is examined. Black-Right-Pointing-Pointer Preference to the multi-criteria against the one-criterion evaluation process is discussed. - Abstract: This paper examines the evaluation of a waste management project's alternatives through a quantitative risk analysis. Cost benefit analysis is a widely used method, in which the investments are mainly assessed through the calculation of their evaluation indicators, namely benefit/cost (B/C) ratios, as well as the quantification of their financial, technical, environmental and social risks. Herein, a novel approach in the form of risk-based multi-criteria assessment (RBMCA) is introduced, which can be used by decision makers, in order to select the optimum alternative of a waste management project. Specifically, decision makers use multiple criteria, which are based on the cumulative probability distribution functions of the alternatives' B/C ratios. The RBMCA system is used for the evaluation of a waste incineration project's alternatives, where the correlation between the criteria weight values and the decision makers' risk preferences is analyzed and useful conclusions are discussed.

  16. Arctic stream processes--an annotated bibliography

    USGS Publications Warehouse

    Scott, Kevin M.

    1979-01-01

    This bibliography selectively summarizes investigations to date (1978) dealing with the physical processes of streams in the Arctic. The specialized annotations include aspects of stream processes described in subordinate parts of general papers on the arctic environment and therefore not evident in author-abstract bibliographies. Foreign contributions--Canadian, Scandinavian, and Russian--are summarized, in the case of Russian literature primarily by means of papers in translation journals. Until 1970 the role of streams in development of the arctic landscape was commonly considered subordinate to that of glacial and frost-related processes. This conclusion changed, however, with the findings of the many new studies begun in response to oil and gas discoveries in the late 1960's. The conclusions of these studies, made to provide both the engineering data for resource development and the information to assess the impacts of that development, were in general agreement that stream processes throughout most of the Arctic were significantly more important than previously had been thought.

  17. Hawaii energy strategy project 3: Renewable energy resource assessment and development program

    SciTech Connect

    1995-11-01

    RLA Consulting (RLA) has been retained by the State of Hawaii Department of Business, Economic Development and Tourism (DBEDT) to conduct a Renewable Energy Resource Assessment and Development Program. This three-phase program is part of the Hawaii Energy Strategy (HES), which is a multi-faceted program intended to produce an integrated energy strategy for the State of Hawaii. The purpose of Phase 1 of the project, Development of a Renewable Energy Resource Assessment Plan, is to better define the most promising potential renewable energy projects and to establish the most suitable locations for project development in the state. In order to accomplish this goal, RLA has identified constraints and requirements for renewable energy projects from six different renewable energy resources: wind, solar, biomass, hydro, wave, and ocean thermal. These criteria were applied to areas with sufficient resource for commercial development and the results of Phase 1 are lists of projects with the most promising development potential for each of the technologies under consideration. Consideration of geothermal energy was added to this investigation under a separate contract with DBEDT. In addition to the project lists, a monitoring plan was developed with recommended locations and a data collection methodology for obtaining additional wind and solar data. This report summarizes the results of Phase 1. 11 figs., 22 tabs.

  18. Issues in Designing and Validating Portfolio Assessments. Project 2.3: Complex Performance Assessments: Expanding the Scope and Approaches to Assessment.

    ERIC Educational Resources Information Center

    Resnick, Lauren B.; Resnick, Daniel P.

    Portfolios, with their associated exhibitions, will be the heart of the New Standards assessment system that is being developed. It will be necessary to combine the functions of portfolios as measurement tools and as tools for instruction and learning. As a beginning, the New Standards project has examined how teachers are already using portfolios…

  19. Practicing Learner-Centered Teaching: Pedagogical Design and Assessment of a Second Life Project

    ERIC Educational Resources Information Center

    Schiller, Shu Z.

    2009-01-01

    Guided by the principles of learner-centered teaching methodology, a Second Life project is designed to engage students in active learning of virtual commerce through hands-on experiences and teamwork in a virtual environment. More importantly, an assessment framework is proposed to evaluate the learning objectives and learning process of the…

  20. The CREDIT Project: Towards a Generic Framework for Assessment and Accreditation--A Prototype for Childcare.

    ERIC Educational Resources Information Center

    Sandberg, Jacobijn; Anjewierden, Anjo; Groothuismink, Jolanda; de Hoog, Robert; Giebels, Mascha

    2000-01-01

    Many individuals throughout Europe acquire knowledge and skills in an informal manner for which they find no official recognition. The CREDIT (Capabilities, Registration, Evaluation, Diagnosis and advice through Internet Technology) project develops a computer system that supports the assessment and accreditation process and provides advice on…

  1. On-Line Project-Based Peer Assessed Competitions as an Instructional Strategy in Higher Education

    ERIC Educational Resources Information Center

    Hammer, Ronen; Ronen, Miky; Kohen-Vacs, Dan

    2012-01-01

    Project-based team competition is a well established instructional strategy with a sound constructivist rationale. However the implementation of this strategy in Higher-Education rarely includes socio-constructivist activities such as peer assessments, which have considerable advantages both for assessees and assessors. It seems that the logistics…

  2. An Assessment of Experiential Learning of Global Poverty Issues through International Service Projects

    ERIC Educational Resources Information Center

    Le, Quan V.; Raven, Peter V.

    2015-01-01

    Service learning has been used to supplement a standard business curriculum, but not typically in an international business context. We report the results of two short-term study abroad programs in which we incorporated service learning projects, one in Cambodia and the other in Vietnam. Our objective is to assess how we organized and delivered…

  3. A Collaborative Action Research Project on Assessment and the Implications for the Pre-Service Participant.

    ERIC Educational Resources Information Center

    Seda, Ileana; Mamana, Lisa A.

    A study focused on a university-school collaborative research project on language assessment in the classroom context and the benefits of preservice teacher participation. Personnel from the Pennsylvania State University (including 20 preservice teacher education students), intermediate unit (Pennsylvania's regional service centers), and four…

  4. An Assessment and Projection of Needed High Technology Training Programs in Colorado. Executive Summary.

    ERIC Educational Resources Information Center

    Ward, Mary; Wolff, Warren

    A study determined labor market needs of high technology firms in Colorado. It assessed such needs in relation to present and projected output of vocational education and training programs and developed recommendations for policies and programs to meet industry training needs at the vocational training level. Data were collected through on-site…

  5. Field Assessment of the Village Green Project: An Autonomous Community Air Quality Monitoring System

    EPA Science Inventory

    Recent findings on air pollution levels in communities motivate new technologies to assess air pollution at finer spatial scale. The Village Green Project (VGP) is a novel approach using commercially-available technology for long-term community environments air pollution measure...

  6. Assessment and Instruction at the Classroom Level: Current and Recent ETS Projects. Revised.

    ERIC Educational Resources Information Center

    Rice, Myrtle W.

    This review attempts to describe the current state of Educational Testing Service (ETS) activity in innovative instruction and assessment at the classroom level. Project reports are preceded by summaries of conclusions drawn from recent research and current issues under examination. Research now supports much that was previously hypothesized,…

  7. Assessment of Flooded Areas Projections and Floods Potential Impacts Applying Remote Sensing Imagery and Demographic Data

    NASA Astrophysics Data System (ADS)

    Rodriguez, D. A.; Carriello, F.; Fernandes, P. J. F.; Garofolo Lopes, L.; Siqueira Júnior, J. L.

    2016-06-01

    Assessing vulnerability and potential impacts associated with extreme discharges requires an accurate topographic description in order to estimate the extension of flooded areas. However, in most populated regions, topographic data obtained by in-situ measurements is not available. In this case, digital elevation models derived from remote sensing date are usually applied. Moreover, this digital elevation models have intrinsic errors that introduce bigger uncertainty in results than the associated to hydrological projections. On the other hand, estimations of flooded areas through remote sensing images provide accurate information, which could be used for the construction of river level-flooded area relationships regarding vulnerability assessment. In this work, this approach is applied for the city of Porto Velho in the Brazilian Amazonia to assess potential vulnerability to floods associated with climate change projections. The approach is validated using census data, provided by the Brazilian Institute of Geography and Statistics, and information about socio-economical injuries associated to historical floods, provided by the Brazilian Civil Defence. Hydrological projections under climate change are carried out using several downscaling of climate projections as inputs in a hydrological model. Results show more accurate estimation of flood impacts than the obtained using digital elevation models derivate from remote sensing data. This reduces uncertainties in the assessment of vulnerability to floods associated with climate change in the region.

  8. Proctor Creek's Boone Boulevard Green Street Project Health Impact Assessment (HIA)

    EPA Science Inventory

    The U.S. Environmental Protection Agency (EPA) Office of Research and Development and Region 4 led a health impact assessment to evaluate a proposed green street demonstration project under consideration by the City of Atlanta Department of Watershed Management (DWM). The HIA id...

  9. Report of the School Health Assessment, Planning, and Evaluation Project (SHAPE).

    ERIC Educational Resources Information Center

    New York City Dept. of Health, NY.

    The School Health Assessment, Planning, and Evaluation Project (SHAPE) was a systematic survey to determine the health status of the New York City school population prior to a major reorganization of school health services planned for the 1984-85 school year. It comprised 6,282 pupils attending 12 public and non-public schools. Over 30 percent of…

  10. Simulating Limb Formation in the U.S. EPA Virtual Embryo - Risk Assessment Project

    EPA Science Inventory

    The U.S. EPA’s Virtual Embryo project (v-Embryo™) is a computer model simulation of morphogenesis that integrates cell and molecular level data from mechanistic and in vitro assays with knowledge about normal development processes to assess in silico the effects of chemicals on d...

  11. Simple Assessment Techniques for Soil and Water. Environmental Factors in Small Scale Development Projects. Workshops.

    ERIC Educational Resources Information Center

    Coordination in Development, New York, NY.

    This booklet was produced in response to the growing need for reliable environmental assessment techniques that can be applied to small-scale development projects. The suggested techniques emphasize low-technology environmental analysis. Although these techniques may lack precision, they can be extremely valuable in helping to assure the success…

  12. An automated protein annotation filter for integrating web-based annotation tools

    PubMed Central

    Saravanan, Vijayakumar; Shanmughavel, Primanayagam

    2007-01-01

    A wide range of web based prediction and annotation tools are frequently used for determining protein function from sequence. However, parallel processing of sequences for annotation through web tools is not possible due to several constraints in functional programming for multiple queries. Here, we propose the development of APAF as an automated protein annotation filter to overcome some of these difficulties through an integrated approach. PMID:18188426

  13. An automated protein annotation filter for integrating web-based annotation tools.

    PubMed

    Saravanan, Vijayakumar; Shanmughavel, Primanayagam

    2007-12-15

    A wide range of web based prediction and annotation tools are frequently used for determining protein function from sequence. However, parallel processing of sequences for annotation through web tools is not possible due to several constraints in functional programming for multiple queries. Here, we propose the development of APAF as an automated protein annotation filter to overcome some of these difficulties through an integrated approach.

  14. Environmental Assessment and Finding of No Significant Impact: Kalina Geothermal Demonstration Project Steamboat Springs, Nevada

    SciTech Connect

    N /A

    1999-02-22

    The Department of Energy (DOE) has prepared an Environmental Assessment (EA) to provide the DOE and other public agency decision makers with the environmental documentation required to take informed discretionary action on the proposed Kalina Geothermal Demonstration project. The EA assesses the potential environmental impacts and cumulative impacts, possible ways to minimize effects associated with partial funding of the proposed project, and discusses alternatives to DOE actions. The DOE will use this EA as a basis for their decision to provide financial assistance to Exergy, Inc. (Exergy), the project applicant. Based on the analysis in the EA, DOE has determined that the proposed action is not a major Federal action significantly affecting the quality of the human or physical environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an environmental impact statement is not required and DOE is issuing this Finding of No Significant Impact (FONSI).

  15. Summary results of an assessment of research projects in the National Photovoltaics Program

    SciTech Connect

    1995-07-01

    The Office of Energy Research (OER) undertook an assessment of 115 research projects (listed in Appendix A) sponsored by the National Photovoltaics Program. The Program is located within the Office of Energy Efficiency and Renewable Energy (EE). This report summarizes the results of that review. The Office of Solar Energy Conversion is responsible for the management of the National Photovoltaics Program. This program focuses on assisting US industry in development of fundamental technology to bring advanced photovoltaic energy systems to commercial use. The purpose of the assessment was to determine the following: (1) the quality of research of individual projects; (2) the impact of these individual projects on the mission of the program; and (3) the priority of future research opportunities.

  16. SERI Solar Radiation Resource Assessment Project: Fiscal Year 1990 Annual Progress Report

    SciTech Connect

    Riordan, C; Maxwell, E; Stoffel, T; Rymes, M; Wilcox, S

    1991-07-01

    The purpose of the Solar Radiation Resource Project is to help meet the needs of the public, government, industry, and utilities for solar radiation data, models, and assessments as required to develop, design, deploy, and operate solar energy conversion systems. The project scientists produce information on the spatial (geographic), temporal (hourly, daily, and seasonal), and spectral (wavelength distribution) variability of solar radiation at different locations in the United States. Resources committed to the project in FY 1990 supported about four staff members, including part-time administrative support. With these resources, the staff must concentrate on solar radiation resource assessment in the United States; funds do not allow for significant efforts to respond to a common need for improved worldwide data. 34 refs., 21 figs., 6 tabs.

  17. Site 300 hazardous-waste-assessment project. Interim report: December 1981. Preliminary site reconnaissance and project work plan

    SciTech Connect

    Raber, E.; Helm, D.; Carpenter, D.; Peifer, D.; Sweeney, J.

    1982-01-20

    This document was prepared to outline the scope and objectives of the Hazardous Waste Assessment Project (HWAP) at Site 300. This project was initiated in October, 1981, to investigate the existing solid waste landfills in an effort to satisfy regulatory guidelines and assess the potential for ground-water contamination. This involves a site-specific investigation (utilizing geology, hydrology, geophysics and geochemistry) with the goal of developing an effective ground-water quality monitoring network. Initial site reconnaissance work has begun and we report the results, to date, of our geologic hydrogeologic studies. All known solid waste disposal locations are underlain by rocks of either the Late Miocene Neroly Formation or the Cierbo Formation, both of which are dominantly sandstones interbedded with shale and claystone. The existence of a regional confined (artesian) aquifer, as well as a regional water-table aquifer is postulated for Site 300. Preliminary analysis has led to an understanding of directions and depths of regional ground-water flow.

  18. Virtual annotation: Verbal communication in virtual reality

    NASA Astrophysics Data System (ADS)

    Verlinden, Jouke C.; Bolter, Jay David; Vandermast, Charles

    A system that was developed to explore communication in virtual reality and which offers a simple and powerful method to embed verbal communication in simulations and visualizers by means of voice annotation is described. The prototype demonstrates that the addition of verbal communication opens up a range of new uses for virtual environments. A similar voice annotation facility is easily added to existing visualizers and simulations, and it enables reading, writing and communicating.

  19. Genepi: a blackboard framework for genome annotation

    PubMed Central

    Descorps-Declère, Stéphane; Ziébelin, Danielle; Rechenmann, François; Viari, Alain

    2006-01-01

    Background Genome annotation can be viewed as an incremental, cooperative, data-driven, knowledge-based process that involves multiple methods to predict gene locations and structures. This process might have to be executed more than once and might be subjected to several revisions as the biological (new data) or methodological (new methods) knowledge evolves. In this context, although a lot of annotation platforms already exist, there is still a strong need for computer systems which take in charge, not only the primary annotation, but also the update and advance of the associated knowledge. In this paper, we propose to adopt a blackboard architecture for designing such a system Results We have implemented a blackboard framework (called Genepi) for developing automatic annotation systems. The system is not bound to any specific annotation strategy. Instead, the user will specify a blackboard structure in a configuration file and the system will instantiate and run this particular annotation strategy. The characteristics of this framework are presented and discussed. Specific adaptations to the classical blackboard architecture have been required, such as the description of the activation patterns of the knowledge sources by using an extended set of Allen's temporal relations. Although the system is robust enough to be used on real-size applications, it is of primary use to bioinformatics researchers who want to experiment with blackboard architectures. Conclusion In the context of genome annotation, blackboards have several interesting features related to the way methodological and biological knowledge can be updated. They can readily handle the cooperative (several methods are implied) and opportunistic (the flow of execution depends on the state of our knowledge) aspects of the annotation process. PMID:17038181

  20. JGI Plant Genomics Gene Annotation Pipeline

    SciTech Connect

    Shu, Shengqiang; Rokhsar, Dan; Goodstein, David; Hayes, David; Mitros, Therese

    2014-07-14

    Plant genomes vary in size and are highly complex with a high amount of repeats, genome duplication and tandem duplication. Gene encodes a wealth of information useful in studying organism and it is critical to have high quality and stable gene annotation. Thanks to advancement of sequencing technology, many plant species genomes have been sequenced and transcriptomes are also sequenced. To use these vastly large amounts of sequence data to make gene annotation or re-annotation in a timely fashion, an automatic pipeline is needed. JGI plant genomics gene annotation pipeline, called integrated gene call (IGC), is our effort toward this aim with aid of a RNA-seq transcriptome assembly pipeline. It utilizes several gene predictors based on homolog peptides and transcript ORFs. See Methods for detail. Here we present genome annotation of JGI flagship green plants produced by this pipeline plus Arabidopsis and rice except for chlamy which is done by a third party. The genome annotations of these species and others are used in our gene family build pipeline and accessible via JGI Phytozome portal whose URL and front page snapshot are shown below.

  1. DAS Writeback: A Collaborative Annotation System

    PubMed Central

    2011-01-01

    Background Centralised resources such as GenBank and UniProt are perfect examples of the major international efforts that have been made to integrate and share biological information. However, additional data that adds value to these resources needs a simple and rapid route to public access. The Distributed Annotation System (DAS) provides an adequate environment to integrate genomic and proteomic information from multiple sources, making this information accessible to the community. DAS offers a way to distribute and access information but it does not provide domain experts with the mechanisms to participate in the curation process of the available biological entities and their annotations. Results We designed and developed a Collaborative Annotation System for proteins called DAS Writeback. DAS writeback is a protocol extension of DAS to provide the functionalities of adding, editing and deleting annotations. We implemented this new specification as extensions of both a DAS server and a DAS client. The architecture was designed with the involvement of the DAS community and it was improved after performing usability experiments emulating a real annotation task. Conclusions We demonstrate that DAS Writeback is effective, usable and will provide the appropriate environment for the creation and evolution of community protein annotation. PMID:21569281

  2. Metabolic pathfinding using RPAIR annotation.

    PubMed

    Faust, Karoline; Croes, Didier; van Helden, Jacques

    2009-05-01

    Metabolic databases contain information about thousands of small molecules and reactions, which can be represented as networks. In the context of metabolic reconstruction, pathways can be inferred by searching optimal paths in such networks. A recurrent problem is the presence of pool metabolites (e.g., water, energy carriers, and cofactors), which are connected to hundreds of reactions, thus establishing irrelevant shortcuts between nodes of the network. One solution to this problem relies on weighted networks to penalize highly connected compounds. A more refined solution takes the chemical structure of reactants into account in order to differentiate between side and main compounds of a reaction. Thanks to an intensive annotation effort at KEGG, decompositions of reactions into reactant pairs (RPAIR) categorized by their role (main, trans, cofac, ligase, and leave) are now available. The goal of this article is to evaluate the impact of RPAIR data on pathfinding in metabolic networks. To this end, we measure the impact of different parameters concerning the construction of the metabolic network: mapping of reactions and reactant pairs onto a graph, use of selected categories of reactant pairs, weighting schemes for compounds and reactions, removal of highly connected metabolites, and reaction directionality. In total, we tested 104 combinations of parameters and identified their optimal values for pathfinding on the basis of 55 reference pathways from three organisms. The best-performing metabolic network combines the biochemical knowledge encoded by KEGG RPAIR with a weighting scheme penalizing highly connected compounds. With this network, we could recover reference pathways from Escherichia coli with an average accuracy of 93% (32 pathways), from Saccharomyces cerevisiae with an average accuracy of 66% (11 pathways), and from humans with an average accuracy of 70% (12 pathways). Our pathfinding approach is available as part of the Network Analysis Tools.

  3. Annotated checklist of Georgia birds

    USGS Publications Warehouse

    Beaton, G.; Sykes, P.W.; Parrish, J.W.

    2003-01-01

    This edition of the checklist includes 446 species, of which 407 are on the Regular Species List, 8 on the Provisional, and 31 on the Hypothetical. This new publication has been greatly expanded and much revised over the previous checklist (GOS Occasional Publ. No. 10, 1986, 48 pp., 6x9 inches) to a 7x10-inch format with an extensive Literature Cited section added, 22 species added to the Regular List, 2 to the Provisional List, and 9 to the Hypothetical List. Each species account is much more comprehensive over all previous editions of the checklist. Among some of the new features are citations for sources of most information used, high counts of individuals for each species on the Regular List, extreme dates of occurrence within physiographic regions, a list of abbreviations and acronyms, and for each species the highest form of verifiable documentation given with its repository institution with a catalog number. This checklist is helpful for anyone working with birds in the Southeastern United States or birding in that region. Sykes' contribution to this fifth edition of the Annotated Checklist of Georgia Birds includes: suggestion of the large format and spiral binding, use of Richard A. Parks' painting of the Barn Owl on the front cover, use of literature citations throughout, and inclusion of high counts for each species. Sykes helped plan all phases of the publication, wrote about 90% of the Introduction and 84 species accounts (Osprey through Red Phalarope), designed the four maps in the introduction section and format for the Literature Cited, and with Giff Beaton designed the layout of the title page.

  4. Microtask crowdsourcing for disease mention annotation in PubMed abstracts.

    PubMed

    Good, Benjamin M; Nanis, Max; Wu, Chunlei; Su, Andrew I

    2015-01-01

    Identifying concepts and relationships in biomedical text enables knowledge to be applied in computational analyses. Many biological natural language processing (BioNLP) projects attempt to address this challenge, but the state of the art still leaves much room for improvement. Progress in BioNLP research depends on large, annotated corpora for evaluating information extraction systems and training machine learning models. Traditionally, such corpora are created by small numbers of expert annotators often working over extended periods of time. Recent studies have shown that workers on microtask crowdsourcing platforms such as Amazon's Mechanical Turk (AMT) can, in aggregate, generate high-quality annotations of biomedical text. Here, we investigated the use of the AMT in capturing disease mentions in PubMed abstracts. We used the NCBI Disease corpus as a gold standard for refining and benchmarking our crowdsourcing protocol. After several iterations, we arrived at a protocol that reproduced the annotations of the 593 documents in the 'training set' of this gold standard with an overall F measure of 0.872 (precision 0.862, recall 0.883). The output can also be tuned to optimize for precision (max = 0.984 when recall = 0.269) or recall (max = 0.980 when precision = 0.436). Each document was completed by 15 workers, and their annotations were merged based on a simple voting method. In total 145 workers combined to complete all 593 documents in the span of 9 days at a cost of $.066 per abstract per worker. The quality of the annotations, as judged with the F measure, increases with the number of workers assigned to each task; however minimal performance gains were observed beyond 8 workers per task. These results add further evidence that microtask crowdsourcing can be a valuable tool for generating well-annotated corpora in BioNLP. Data produced for this analysis are available at http://figshare.com/articles/Disease_Mention_Annotation_with_Mechanical_Turk/1126402.

  5. Floristic Quality Index: An assessment tool for restoration projects and monitoring sites in coastal Louisiana

    USGS Publications Warehouse

    Cretini, K.F.; Steyer, G.D.

    2011-01-01

    The Coastwide Reference Monitoring System (CRMS) program was established to assess the effectiveness of individual coastal restoration projects and the cumulative effects of multiple projects at regional and coastwide scales. In order to make these assessments, analytical teams have been assembled for each of the primary data types sampled under the CRMS program, including vegetation, hydrology, landscape, and soils. These teams consist of scientists and support staff from the U.S. Geological Survey and other Federal agencies, the Louisiana Office of Coastal Protection and Restoration, and university academics. Each team is responsible for developing or identifying parameters, indices, or tools that can be used to assess coastal wetlands at various scales. The CRMS Vegetation Analytical Team has developed a Floristic Quality Index for coastal Louisiana to determine the quality of a wetland based on its plant species composition and abundance.

  6. Atmospheric Effects of Aviation: First Report of the Subsonic Assessment Project

    NASA Technical Reports Server (NTRS)

    Thompson, Anne M. (Editor); Friedl, Randall R. (Editor); Wesoky, Howard L. (Editor)

    1996-01-01

    This document is the first report from the Office of Aeronautics Advanced Subsonic Technology (AST) Program's Subsonic Assessment (SASS) Project. This effort, initiated in late 1993, has as its objective the assessment of the atmospheric effects of the current and predicted future aviation fleet. The two areas of impact are ozone (stratospheric and tropospheric) and radiative forcing. These are driven, respectively, by possible perturbations from aircraft emissions of NOX and soot and/or sulfur-containing particles. The report presents the major questions to which project assessments will be directed (Introduction) and the status of six programmatic elements: Emissions Scenarios, Exhaust Characterization, Near-Field Interactions, Kinetics and Laboratory Studies, Global Modeling, and Atmospheric Observations (field studies).

  7. The financial attractiveness assessment of large waste management projects registered as clean development mechanism

    SciTech Connect

    Bufoni, André Luiz

    2015-09-15

    Highlights: • Projects are not financially attractive without registration as CDMs. • WM benchmarks and indicators are converging and reducing in variance. • A sensitivity analysis reveal that revenue has more of an effect on the financial results. • Results indicate that an extensive database would reduce WM project risk and capital costs. • Disclosure standards would make information more comparable worldwide. - Abstract: This study illustrates the financial analyses for demonstration and assessment of additionality presented in the project design (PDD) and enclosed documents of the 431 large Clean Development Mechanisms (CDM) classified as the ‘waste handling and disposal sector’ (13) over the past ten years (2004–2014). The expected certified emissions reductions (CER) of these projects total 63.54 million metric tons of CO{sub 2}eq, where eight countries account for 311 projects and 43.36 million metric tons. All of the projects declare themselves ‘not financially attractive’ without CER with an estimated sum of negative results of approximately a half billion US$. The results indicate that WM benchmarks and indicators are converging and reducing in variance, and the sensitivity analysis reveals that revenues have a greater effect on the financial results. This work concludes that an extensive financial database with simple standards for disclosure would greatly diminish statement problems and make information more comparable, reducing the risk and capital costs of WM projects.

  8. A Precise Annotation of Phase-Amplitude Coupling Intensity

    PubMed Central

    Xu, Xiaxia; Zhang, Tao

    2016-01-01

    Neuronal information can be coded in different temporal and spatial scales. Cross-frequency coupling of neuronal oscillations, especially phase-amplitude coupling (PAC), plays a critical functional role in neuronal communication and large scale neuronal encoding. Several approaches have been developed to assess PAC intensity. It is generally agreed that the PAC intensity relates to the uneven distribution of the fast oscillation amplitude conditioned on the slow oscillation phase. However, it is still not clear what the PAC intensity exactly means. In the present study, it was found that there were three types of interferential signals taking part in PAC phenomenon. Based on the classification of interferential signals, the conception of PAC intensity is theoretically annotated as the proportion of slow or fast oscillation that is involved in a related PAC phenomenon. In order to make sure that the annotation is proper to some content, simulation data are constructed and then analyzed by three PAC approaches. These approaches are the mean vector length (MVL), the modulation index (MI), and a new permutation mutual information (PMI) method in which the permutation entropy and the information theory are applied. Results show positive correlations between PAC values derived from all three methods and the suggested intensity. Finally, the amplitude distributions, i.e. the phase-amplitude plots, obtained from different PAC intensities show that the annotation proposed in the study is in line with the previous understandings. PMID:27701458

  9. Integrating UIMA annotators in a web-based text processing framework.

    PubMed

    Chen, Xiang; Arnold, Corey W

    2013-01-01

    The Unstructured Information Management Architecture (UIMA) [1] framework is a growing platform for natural language processing (NLP) applications. However, such applications may be difficult for non-technical users deploy. This project presents a web-based framework that wraps UIMA-based annotator systems into a graphical user interface for researchers and clinicians, and a web service for developers. An annotator that extracts data elements from lung cancer radiology reports is presented to illustrate the use of the system. Annotation results from the web system can be exported to multiple formats for users to utilize in other aspects of their research and workflow. This project demonstrates the benefits of a lay-user interface for complex NLP applications. Efforts such as this can lead to increased interest and support for NLP work in the clinical domain. PMID:23920965

  10. Wildlife Impact Assessment and Summary of Previous Mitigation Related to Hydroelectric Projects in Montana, Volume One, Libby Dam Project, Operator, U.S. Army Corps of Engineers.

    SciTech Connect

    Yde, Chris A.

    1984-10-01

    This assessment addresses the impacts to the wildlife populations and wildlife habitats due to the Libby Dam project on the Kootenai River and previous mitigation of these losses. The current assessment documents the best available information concerning the impacts to the wildlife populations inhabiting the project area prior to construction of the dam and creation of the reservoir. Many of the impacts reported in this assessment differ from those contained in the earlier document compiled by the Fish and Wildlife Service; however, this document is a thorough compilation of the available data (habitat and wildlife) and, though conservative, attempts to realistically assess the impacts related to the Libby Dam project. Where appropriate the impacts resulting from highway construction and railroad relocation were included in the assessment. This was consistent with the previous assessments.

  11. MicroScope: a platform for microbial genome annotation and comparative genomics.

    PubMed

    Vallenet, D; Engelen, S; Mornico, D; Cruveiller, S; Fleury, L; Lajus, A; Rouy, Z; Roche, D; Salvignol, G; Scarpelli, C; Médigue, C

    2009-01-01

    The initial outcome of genome sequencing is the creation of long text strings written in a four letter alphabet. The role of in silico sequence analysis is to assist biologists in the act of associating biological knowledge with these sequences, allowing investigators to make inferences and predictions that can be tested experimentally. A wide variety of software is available to the scientific community, and can be used to identify genomic objects, before predicting their biological functions. However, only a limited number of biologically interesting features can be revealed from an isolated sequence. Comparative genomics tools, on the other hand, by bringing together the information contained in numerous genomes simultaneously, allow annotators to make inferences based on the idea that evolution and natural selection are central to the definition of all biological processes. We have developed the MicroScope platform in order to offer a web-based framework for the systematic and efficient revision of microbial genome annotation and comparative analysis (http://www.genoscope.cns.fr/agc/microscope). Starting with the description of the flow chart of the annotation processes implemented in the MicroScope pipeline, and the development of traditional and novel microbial annotation and comparative analysis tools, this article emphasizes the essential role of expert annotation as a complement of automatic annotation. Several examples illustrate the use of implemented tools for the review and curation of annotations of both new and publicly available microbial genomes within MicroScope's rich integrated genome framework. The platform is used as a viewer in order to browse updated annotation information of available microbial genomes (more than 440 organisms to date), and in the context of new annotation projects (117 bacterial genomes). The human expertise gathered in the MicroScope database (about 280,000 independent annotations) contributes to improve the quality of

  12. Significance of model credibility in estimating climate projection distributions for regional hydroclimatological risk assessments

    USGS Publications Warehouse

    Brekke, L.D.; Dettinger, M.D.; Maurer, E.P.; Anderson, M.

    2008-01-01

    Ensembles of historical climate simulations and climate projections from the World Climate Research Programme's (WCRP's) Coupled Model Intercomparison Project phase 3 (CMIP3) multi-model dataset were investigated to determine how model credibility affects apparent relative scenario likelihoods in regional risk assessments. Methods were developed and applied in a Northern California case study. An ensemble of 59 twentieth century climate simulations from 17 WCRP CMIP3 models was analyzed to evaluate relative model credibility associated with a 75-member projection ensemble from the same 17 models. Credibility was assessed based on how models realistically reproduced selected statistics of historical climate relevant to California climatology. Metrics of this credibility were used to derive relative model weights leading to weight-threshold culling of models contributing to the projection ensemble. Density functions were then estimated for two projected quantities (temperature and precipitation), with and without considering credibility-based ensemble reductions. An analysis for Northern California showed that, while some models seem more capable at recreating limited aspects twentieth century climate, the overall tendency is for comparable model performance when several credibility measures are combined. Use of these metrics to decide which models to include in density function development led to local adjustments to function shapes, but led to limited affect on breadth and central tendency, which were found to be more influenced by 'completeness' of the original ensemble in terms of models and emissions pathways. ?? 2007 Springer Science+Business Media B.V.

  13. Annotated Bibliography of Dr Salmani Nodoushan's Research on Education and Language Teaching

    ERIC Educational Resources Information Center

    Etemadfar Kashani, Abbas Ali

    2016-01-01

    This is an annotated bibliography of the research conducted on education and language teaching and assessment by Dr. Mohammad Ali Salmani Nodoushan in the past 25 years. This bibliography is a precise picture of the current state of education and language teaching and assessment in Iran. Dr. Salmani Nodoushan is the most distinguished Iranian…

  14. Water governance within Kenya's Upper Ewaso Ng'iro Basin: Assessing the performance of water projects

    NASA Astrophysics Data System (ADS)

    McCord, P. F.; Evans, T. P.; Dell'Angelo, J.; Gower, D.; McBride, L.; Caylor, K. K.

    2013-12-01

    Climate change processes are projected to change the availability and seasonality of streamflow with dramatic implications for irrigated agricultural systems. Within mountain environments, this alteration in water availability may be quite pronounced over a relatively short distance as upstream users with first access to river water directly impact the availability of water to downstream users. Livelihood systems that directly depend on river water for both domestic consumption and practices such as irrigated agriculture are particularly vulnerable. The Mount Kenya region is an exemplary case of a semi-arid upstream-downstream system in which water availability rapidly decreases and directly impacts the livelihoods of river water users existing across this steep environmental gradient. To effectively manage river water within these water-scarce environs, water projects have been established along the major rivers of the Mount Kenya region. These water projects are responsible for managing water within discrete sub-catchments of the region. While water projects develop rules that encourage the responsible use of water and maintenance of the project itself, the efficiency of water allocation to the projects' members remains unclear. This research analyzes water projects from five sub-catchments on the northwest slopes of Mount Kenya. It utilizes data from household surveys and water project management surveys as well as stream gauge data and flow measurements within individual water projects to assess the governance structure and performance of water projects. The performance of water projects is measured through a variety of household level metrics including: farm-level water flow and volume over time, mean and variability in maize yield, per capita crop productivity, household-level satisfaction with water availability, number of days where water volume was insufficient for irrigation, and quantity harvested compared with expected quantity harvested. We present

  15. GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations.

    PubMed

    Sangrador-Vegas, Amaia; Mitchell, Alex L; Chang, Hsin-Yu; Yong, Siew-Yit; Finn, Robert D

    2016-01-01

    The removal of annotation from biological databases is often perceived as an indicator of erroneous annotation. As a corollary, annotation stability is considered to be a measure of reliability. However, diverse data-driven events can affect the stability of annotations in both primary protein sequence databases and the protein family databases that are built upon the sequence databases and used to help annotate them. Here, we describe some of these events and their consequences for the InterPro database, and demonstrate that annotation removal or reassignment is not always linked to incorrect annotation by the curator. Database URL: http://www.ebi.ac.uk/interpro.

  16. Fiscal Year 2005 Integrated Monitoring Plan for the Hanford Groundwater Performance Assessment Project

    SciTech Connect

    Rieger, JoAnne T.; Hartman, Mary J.

    2005-06-16

    Groundwater is monitored in hundreds of wells at the Hanford Site to fulfill a variety of requirements. Separate monitoring plans are prepared for various purposes, but sampling is coordinated and data are shared among users. DOE manages these activities through the Hanford Groundwater Performance Assessment Project, which is the responsibility of Pacific Northwest National Laboratory. The groundwater project integrates monitoring for various objectives into a single sampling schedule to avoid redundancy of effort and to improve efficiency of sample collection.This report documents the purposes and objectives of groundwater monitoring at the DOE Hanford Site in southeastern Washington State.

  17. Annotated Chemical Patent Corpus: A Gold Standard for Text Mining

    PubMed Central

    Akhondi, Saber A.; Klenner, Alexander G.; Tyrchan, Christian; Manchala, Anil K.; Boppana, Kiran; Lowe, Daniel; Zimmermann, Marc; Jagarlapudi, Sarma A. R. P.; Sayle, Roger; Kors, Jan A.; Muresan, Sorel

    2014-01-01

    Exploring the chemical and biological space covered by patent applications is crucial in early-stage medicinal chemistry activities. Patent analysis can provide understanding of compound prior art, novelty checking, validation of biological assays, and identification of new starting points for chemical exploration. Extracting chemical and biological entities from patents through manual extraction by expert curators can take substantial amount of time and resources. Text mining methods can help to ease this process. To validate the performance of such methods, a manually annotated patent corpus is essential. In this study we have produced a large gold standard chemical patent corpus. We developed annotation guidelines and selected 200 full patents from the World Intellectual Property Organization, United States Patent and Trademark Office, and European Patent Office. The patents were pre-annotated automatically and made available to four independent annotator groups each consisting of two to ten annotators. The annotators marked chemicals in different subclasses, diseases, targets, and modes of action. Spelling mistakes and spurious line break due to optical character recognition errors were also annotated. A subset of 47 patents was annotated by at least three annotator groups, from which harmonized annotations and inter-annotator agreement scores were derived. One group annotated the full set. The patent corpus includes 400,125 annotations for the full set and 36,537 annotations for the harmonized set. All patents and annotated entities are publicly available at www.biosemantics.org. PMID:25268232

  18. Annotated chemical patent corpus: a gold standard for text mining.

    PubMed

    Akhondi, Saber A; Klenner, Alexander G; Tyrchan, Christian; Manchala, Anil K; Boppana, Kiran; Lowe, Daniel; Zimmermann, Marc; Jagarlapudi, Sarma A R P; Sayle, Roger; Kors, Jan A; Muresan, Sorel

    2014-01-01

    Exploring the chemical and biological space covered by patent applications is crucial in early-stage medicinal chemistry activities. Patent analysis can provide understanding of compound prior art, novelty checking, validation of biological assays, and identification of new starting points for chemical exploration. Extracting chemical and biological entities from patents through manual extraction by expert curators can take substantial amount of time and resources. Text mining methods can help to ease this process. To validate the performance of such methods, a manually annotated patent corpus is essential. In this study we have produced a large gold standard chemical patent corpus. We developed annotation guidelines and selected 200 full patents from the World Intellectual Property Organization, United States Patent and Trademark Office, and European Patent Office. The patents were pre-annotated automatically and made available to four independent annotator groups each consisting of two to ten annotators. The annotators marked chemicals in different subclasses, diseases, targets, and modes of action. Spelling mistakes and spurious line break due to optical character recognition errors were also annotated. A subset of 47 patents was annotated by at least three annotator groups, from which harmonized annotations and inter-annotator agreement scores were derived. One group annotated the full set. The patent corpus includes 400,125 annotations for the full set and 36,537 annotations for the harmonized set. All patents and annotated entities are publicly available at www.biosemantics.org.

  19. Annotated chemical patent corpus: a gold standard for text mining.

    PubMed

    Akhondi, Saber A; Klenner, Alexander G; Tyrchan, Christian; Manchala, Anil K; Boppana, Kiran; Lowe, Daniel; Zimmermann, Marc; Jagarlapudi, Sarma A R P; Sayle, Roger; Kors, Jan A; Muresan, Sorel

    2014-01-01

    Exploring the chemical and biological space covered by patent applications is crucial in early-stage medicinal chemistry activities. Patent analysis can provide understanding of compound prior art, novelty checking, validation of biological assays, and identification of new starting points for chemical exploration. Extracting chemical and biological entities from patents through manual extraction by expert curators can take substantial amount of time and resources. Text mining methods can help to ease this process. To validate the performance of such methods, a manually annotated patent corpus is essential. In this study we have produced a large gold standard chemical patent corpus. We developed annotation guidelines and selected 200 full patents from the World Intellectual Property Organization, United States Patent and Trademark Office, and European Patent Office. The patents were pre-annotated automatically and made available to four independent annotator groups each consisting of two to ten annotators. The annotators marked chemicals in different subclasses, diseases, targets, and modes of action. Spelling mistakes and spurious line break due to optical character recognition errors were also annotated. A subset of 47 patents was annotated by at least three annotator groups, from which harmonized annotations and inter-annotator agreement scores were derived. One group annotated the full set. The patent corpus includes 400,125 annotations for the full set and 36,537 annotations for the harmonized set. All patents and annotated entities are publicly available at www.biosemantics.org. PMID:25268232

  20. 75 FR 28602 - Bully Camp Gas Storage Project; Notice of Availability of the Environmental Assessment for the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-05-21

    ... Energy Regulatory Commission Bully Camp Gas Storage Project; Notice of Availability of the Environmental Assessment for the Proposed Bully Camp Gas Storage Project May 14, 2010. The staff of the Federal Energy Regulatory Commission (FERC or Commission) has prepared an environmental assessment (EA) for the Bully...

  1. Their Story, Our Story, History: An Authentic Assessment Project for Early Secondary U.S. History Classes.

    ERIC Educational Resources Information Center

    Pierce, Preston E.

    This year-long assessment project grew out of a need to establish an authentic assessment program (intermediate and terminal, formative and summative) as students entered the secondary grades. The project provided a framework for skill lessons correlated to the state (New York) curriculum and the textbook, which continued throughout the year,…

  2. Sustainable Hydro Assessment and Groundwater Recharge Projects (SHARP) in Germany - Water Balance Models

    NASA Astrophysics Data System (ADS)

    Niemand, C.; Kuhn, K.; Schwarze, R.

    2010-12-01

    SHARP is a European INTERREG IVc Program. It focuses on the exchange of innovative technologies to protect groundwater resources for future generations by considering the climate change and the different geological and geographical conditions. Regions involved are Austria, United Kingdom, Poland, Italy, Macedonia, Malta, Greece and Germany. They will exchange practical know-how and also determine know-how demands concerning SHARP’s key contents: general groundwater management tools, artificial groundwater recharge technologies, groundwater monitoring systems, strategic use of groundwater resources for drinking water, irrigation and industry, techniques to save water quality and quantity, drinking water safety plans, risk management tools and water balance models. SHARP Outputs & results will influence the regional policy in the frame of sustainable groundwater management to save and improve the quality and quantity of groundwater reservoirs for future generations. The main focus of the Saxon State Office for Environment, Agriculture and Landscape in this project is the enhancement and purposive use of water balance models. Already since 1992 scientists compare different existing water balance models on different scales and coupled with groundwater models. For example in the KLIWEP (Assessment of Impacts of Climate Change Projections on Water and Matter Balance for the Catchment of River Parthe in Saxony) project the coupled model WaSiM-ETH - PCGEOFIM® has been used to study the impact of climate change on water balance and water supplies. The project KliWES (Assessment of the Impacts of Climate Change Projections on Water and Matter Balance for Catchment Areas in Saxony) still running, comprises studies of fundamental effects of climate change on catchments in Saxony. Project objective is to assess Saxon catchments according to the vulnerability of their water resources towards climate change projections in order to derive region-specific recommendations for

  3. Non-Formal Education and Radio: A Selected, Annotated Bibliography. Annotated Bibliography #14.

    ERIC Educational Resources Information Center

    Vergeldt, Vicki; And Others

    Materials concerning the use of radio and mass communications for non-formal education and development are listed in a selected annotated bibliography, intended for those actively involved in non-formal education and development. Three sections contain annotated entries (which range from 1972-1983), each of which includes source information and…

  4. MixtureTree annotator: a program for automatic colorization and visual annotation of MixtureTree.

    PubMed

    Chen, Shu-Chuan; Ogata, Aaron

    2015-01-01

    The MixtureTree Annotator, written in JAVA, allows the user to automatically color any phylogenetic tree in Newick format generated from any phylogeny reconstruction program and output the Nexus file. By providing the ability to automatically color the tree by sequence name, the MixtureTree Annotator provides a unique advantage over any other programs which perform a similar function. In addition, the MixtureTree Annotator is the only package that can efficiently annotate the output produced by MixtureTree with mutation information and coalescent time information. In order to visualize the resulting output file, a modified version of FigTree is used. Certain popular methods, which lack good built-in visualization tools, for example, MEGA, Mesquite, PHY-FI, TreeView, treeGraph and Geneious, may give results with human errors due to either manually adding colors to each node or with other limitations, for example only using color based on a number, such as branch length, or by taxonomy. In addition to allowing the user to automatically color any given Newick tree by sequence name, the MixtureTree Annotator is the only method that allows the user to automatically annotate the resulting tree created by the MixtureTree program. The MixtureTree Annotator is fast and easy-to-use, while still allowing the user full control over the coloring and annotating process. PMID:25826378

  5. MixtureTree annotator: a program for automatic colorization and visual annotation of MixtureTree.

    PubMed

    Chen, Shu-Chuan; Ogata, Aaron

    2015-01-01

    The MixtureTree Annotator, written in JAVA, allows the user to automatically color any phylogenetic tree in Newick format generated from any phylogeny reconstruction program and output the Nexus file. By providing the ability to automatically color the tree by sequence name, the MixtureTree Annotator provides a unique advantage over any other programs which perform a similar function. In addition, the MixtureTree Annotator is the only package that can efficiently annotate the output produced by MixtureTree with mutation information and coalescent time information. In order to visualize the resulting output file, a modified version of FigTree is used. Certain popular methods, which lack good built-in visualization tools, for example, MEGA, Mesquite, PHY-FI, TreeView, treeGraph and Geneious, may give results with human errors due to either manually adding colors to each node or with other limitations, for example only using color based on a number, such as branch length, or by taxonomy. In addition to allowing the user to automatically color any given Newick tree by sequence name, the MixtureTree Annotator is the only method that allows the user to automatically annotate the resulting tree created by the MixtureTree program. The MixtureTree Annotator is fast and easy-to-use, while still allowing the user full control over the coloring and annotating process.

  6. Plant Gene and Alternatively Spliced Variant Annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species.

    PubMed

    Chen, Feng-Chi; Wang, Sheng-Shun; Chaw, Shu-Miaw; Huang, Yao-Ting; Chuang, Trees-Juen

    2007-03-01

    The completion of the rice (Oryza sativa) genome draft has brought unprecedented opportunities for genomic studies of the world's most important food crop. Previous rice gene annotations have relied mainly on ab initio methods, which usually yield a high rate of false-positive predictions and give only limited information regarding alternative splicing in rice genes. Comparative approaches based on expressed sequence tags (ESTs) can compensate for the drawbacks of ab initio methods because they can simultaneously identify experimental data-supported genes and alternatively spliced transcripts. Furthermore, cross-species EST information can be used to not only offset the insufficiency of same-species ESTs but also derive evolutionary implications. In this study, we used ESTs from seven plant species, rice, wheat (Triticum aestivum), maize (Zea mays), barley (Hordeum vulgare), sorghum (Sorghum bicolor), soybean (Glycine max), and Arabidopsis (Arabidopsis thaliana), to annotate the rice genome. We developed a plant genome annotation pipeline, Plant Gene and Alternatively Spliced Variant Annotator (PGAA). Using this approach, we identified 852 genes (931 isoforms) not annotated in other widely used databases (i.e. the Institute for Genomic Research, National Center for Biotechnology Information, and Rice Annotation Project) and found 87% of them supported by both rice and nonrice EST evidence. PGAA also identified more than 44,000 alternatively spliced events, of which approximately 20% are not observed in the other three annotations. These novel annotations represent rich opportunities for rice genome research, because the functions of most of our annotated genes are currently unknown. Also, in the PGAA annotation, the isoforms with non-rice-EST-supported exons are significantly enriched in transporter activity but significantly underrepresented in transcription regulator activity. We have also identified potential lineage-specific and conserved isoforms, which are

  7. Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs)

    PubMed Central

    2012-01-01

    Background MEDLINE®/PubMed® indexes over 20 million biomedical articles, providing curated annotation of its contents using a controlled vocabulary known as Medical Subject Headings (MeSH). The MeSH vocabulary, developed over 50+ years, provides a broad coverage of topics across biomedical research. Distilling the essential biomedical themes for a topic of interest from the relevant literature is important to both understand the importance of related concepts and discover new relationships. Results We introduce a novel method for determining enriched curator-assigned MeSH annotations in a set of papers associated to a topic, such as a gene, an author or a disease. We generate MeSH Over-representation Profiles (MeSHOPs) to quantitatively summarize the annotations in a form convenient for further computational analysis and visualization. Based on a hypergeometric distribution of assigned terms, MeSHOPs statistically account for the prevalence of the associated biomedical annotation while highlighting unusually prevalent terms based on a specified background. MeSHOPs can be visualized using word clouds, providing a succinct quantitative graphical representation of the relative importance of terms. Using the publication dates of articles, MeSHOPs track changing patterns of annotation over time. Since MeSHOPs are quantitative vectors, MeSHOPs can be compared using standard techniques such as hierarchical clustering. The reliability of MeSHOP annotations is assessed based on the capacity to re-derive the subset of the Gene Ontology annotations with equivalent MeSH terms. Conclusions MeSHOPs allows quantitative measurement of the degree of association between any entity and the annotated medical concepts, based directly on relevant primary literature. Comparison of MeSHOPs allows entities to be related based on shared medical themes in their literature. A web interface is provided for generating and visualizing MeSHOPs. PMID:23017167

  8. Authentic Listening: Four Annotated Bibliographies (within an ESL Media and Materials Fair Context).

    ERIC Educational Resources Information Center

    Gebhard, Jerry G., Comp.; And Others

    Four annotated bibliographies on authentic listening in English-as-a-Second-Language instruction are presented.The bibliographies were compiled by graduate students taking the a course called ESL Media and Materials. The students' purpose was to research a topic in order to develop an original project to display at an ESL Media and Materials Fair…

  9. An Annotated Guide to Periodical Publications in Sociology and Related Disciplines. Revised Edition, 1972.

    ERIC Educational Resources Information Center

    Vogt, Kenneth, Ed.

    This annotated guide lists periodicals in the fields of sociology, anthropology, social work and related sciences which are on file as of 1971 in the Lincoln Memorial Library at South Dakota State University. A project of the Intermediate Sociology Class, fall semester, 1971, the guide is intended as a research tool for undergraduate and graduate…

  10. Annotated List of Chemistry Laboratory Experiments with Computer Access. Final Report.

    ERIC Educational Resources Information Center

    Bunce, S. C.; And Others

    Project Chemlab was designed to prepare an "Annotated List of Laboratory Experiments in Chemistry from the Journal of Chemical Education (1957-1979)" and to develop a computer file and program to search for specific types of experiments. Provided in this document are listings (photoreduced copies of printouts) of over 1500 entries classified into…

  11. Groundwater quality data from the National Water-Quality Assessment Project, May 2012 through December 2013

    USGS Publications Warehouse

    Arnold, Terri L.; DeSimone, Leslie A.; Bexfield, Laura M.; Lindsey, Bruce D.; Barlow, Jeannie R.; Kulongoski, Justin T.; Musgrove, Marylynn; Kingsbury, James A.; Belitz, Kenneth

    2016-06-20

    Groundwater-quality data were collected from 748 wells as part of the National Water-Quality Assessment Project of the U.S. Geological Survey National Water-Quality Program from May 2012 through December 2013. The data were collected from four types of well networks: principal aquifer study networks, which assess the quality of groundwater used for public water supply; land-use study networks, which assess land-use effects on shallow groundwater quality; major aquifer study networks, which assess the quality of groundwater used for domestic supply; and enhanced trends networks, which evaluate the time scales during which groundwater quality changes. Groundwater samples were analyzed for a large number of water-quality indicators and constituents, including major ions, nutrients, trace elements, volatile organic compounds, pesticides, and radionuclides. These groundwater quality data are tabulated in this report. Quality-control samples also were collected; data from blank and replicate quality-control samples are included in this report.

  12. ACID: annotation of cassette and integron data

    PubMed Central

    Joss, Michael J; Koenig, Jeremy E; Labbate, Maurizio; Polz, Martin F; Gillings, Michael R; Stokes, Harold W; Doolittle, W Ford; Boucher, Yan

    2009-01-01

    Background Although integrons and their associated gene cassettes are present in ~10% of bacteria and can represent up to 3% of the genome in which they are found, very few have been properly identified and annotated in public databases. These genetic elements have been overlooked in comparison to other vectors that facilitate lateral gene transfer between microorganisms. Description By automating the identification of integron integrase genes and of the non-coding cassette-associated attC recombination sites, we were able to assemble a database containing all publicly available sequence information regarding these genetic elements. Specialists manually curated the database and this information was used to improve the automated detection and annotation of integrons and their encoded gene cassettes. ACID (annotation of cassette and integron data) can be searched using a range of queries and the data can be downloaded in a number of formats. Users can readily annotate their own data and integrate it into ACID using the tools provided. Conclusion ACID is a community resource providing easy access to annotations of integrons and making tools available to detect them in novel sequence data. ACID also hosts a forum to prompt integron-related discussion, which can hopefully lead to a more universal definition of this genetic element. PMID:19383137

  13. Pathway Analysis Software: Annotation Errors and Solutions

    PubMed Central

    Henderson-MacLennan, Nicole K.; Papp, Jeanette C.; Talbot, C. Conover; McCabe, Edward R.B.; Presson, Angela P.

    2010-01-01

    Genetic databases contain a variety of annotation errors that often go unnoticed due to the large size of modern genetic data sets. Interpretation of these data sets requires bioinformatics tools that may contribute to this problem. While providing gene symbol annotations for identifiers (IDs) such as microarray probeset, RefSeq, GenBank and Entrez Gene is seemingly trivial, the accuracy is fundamental to any subsequent conclusions. We examine gene symbol annotations and results from three commercial pathway analysis software (PAS) packages: Ingenuity Pathways Analysis, GeneGO and Pathway Studio. We compare gene symbol annotations and canonical pathway results over time and among different input ID types. We find that PAS results can be affected by variation in gene symbol annotations across software releases and the input ID type analyzed. As a result, we offer suggestions for using commercial PAS and reporting microarray results to improve research quality. We propose a wiki type website to facilitate communication of bioinformatics software problems within the scientific community. PMID:20663702

  14. MIPS: analysis and annotation of proteins from whole genomes.

    PubMed

    Mewes, H W; Amid, C; Arnold, R; Frishman, D; Güldener, U; Mannhaupt, G; Münsterkötter, M; Pagel, P; Strack, N; Stümpflen, V; Warfsmann, J; Ruepp, A

    2004-01-01

    The Munich Information Center for Protein Sequences (MIPS-GSF), Neuherberg, Germany, provides protein sequence-related information based on whole-genome analysis. The main focus of the work is directed toward the systematic organization of sequence-related attributes as gathered by a variety of algorithms, primary information from experimental data together with information compiled from the scientific literature. MIPS maintains automatically generated and manually annotated genome-specific databases, develops systematic classification schemes for the functional annotation of protein sequences and provides tools for the comprehensive analysis of protein sequences. This report updates the information on the yeast genome (CYGD), the Neurospora crassa genome (MNCDB), the database of complete cDNAs (German Human Genome Project, NGFN), the database of mammalian protein-protein interactions (MPPI), the database of FASTA homologies (SIMAP), and the interface for the fast retrieval of protein-associated information (QUIPOS). The Arabidopsis thaliana database, the rice database, the plant EST databases (MATDB, MOsDB, SPUTNIK), as well as the databases for the comprehensive set of genomes (PEDANT genomes) are described elsewhere in the 2003 and 2004 NAR database issues, respectively. All databases described, and the detailed descriptions of our projects can be accessed through the MIPS web server (http://mips.gsf.de). PMID:14681354

  15. Conforth Ranch (Wanaket) Wildlife Mitigation Project : Draft Management Plan and Draft Environmental Assessment.

    SciTech Connect

    United States. Bonneville Power Administration; Confederated Tribes of the Umatilla Reservation, Oregon.

    1995-03-01

    Bonneville Power Administration (BPA) proposes to mitigate for loss of wildlife habitat caused by the development of Columbia River Basin hydroelectric projects, including McNary dam. The proposed wildlife mitigation project involves wildlife conservation on 1140 hectares (ha)(2817 acres) of land (including water rights) in Umatilla County, Oregon. BPA has prepared an Environmental Assessment (EA)(DOE/EA- 1016) evaluating the proposed project. Based on the analysis in the EA, BPA has determined that the proposed action is not a major Federal action significantly affecting the quality of the human environment within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an Environmental Impact Statement (EIS) is not required, and BPA is issuing this Finding of No Significant Impact (FONSI).

  16. Environmental Assessment for the Warren Station externally fired combined cycle demonstration project

    SciTech Connect

    1995-04-01

    The proposed Penelec project is one of 5 projects for potential funding under the fifth solicitation under the Clean Coal Technology program. In Penelec, two existing boilers would be replaced at Warren Station, PA; the new unit would produce 73 MW(e) in a combined cycle mode (using both gas-fired and steam turbines). The project would fill the need for a full utility-size demonstration of externally fire combined cycle (EFCC) technology as the next step toward commercialization. This environmental assessment was prepared for compliance with NEPA; its purpose is to provide sufficient basis for determining whether to prepare an environmental impact statement or to issue a finding of no significant impact. It is divided into the sections: purpose and need for proposed action; alternatives; brief description of affected environment; environmental consequences, including discussion of commercial operation beyond the demonstration period.

  17. Environmental assessment of the Environmental Restoration Project at Sandia National Laboratories/New Mexico

    SciTech Connect

    1996-03-01

    Sandia National Laboratories/New Mexico (SNL/NM) is managed and operated for the U.S. Department of Energy (DOE) by Sandia Corporation, a subsidiary of the Lockheed Martin Company. SNL/NM is located on land controlled by DOE within the boundaries of Kirtland Air Force Base (KAFB) in Albuquerque, New Mexico. The major responsibilities of SNL/NM are the support of national security and energy projects. This report provides an environmental assessment of proposed remedial action activities at the solid waste management units at SNL/NM. A risk assessment of health hazards is also discussed.

  18. High Pressure Water Jet System Performance Assessment Project A-2A

    SciTech Connect

    FARWICK, C.C.

    1999-12-03

    Performance assessment for canister cleaning system in the KE Basin. Information obtained from this assessment will be used to design any additional equipment used to clean canisters. After thorough review of the design, maintenance history and operational characteristics of the 105 K East (KE) canister cleaning system, Bartlett recommends that the high pressure water jet system (HPWJS) be modified as outlined in section 5.0, and retained for future use. Further, it is recommended that Spent Nuclear Fuel (SNF) Project consider use of a graded approach for canister cleaning, based on individual canister type and characteristics. This approach would allow a simple method to be used on canisters not needing the more rigorous, high-pressure method. Justification is provided in section 5.0. Although Bartlett has provided some preliminary cost estimates, it is recommended that SNF Project perform a detailed cost-benefit analysis to weigh the alternatives presented.

  19. Development and management of a radon assessment strategy suitable for underground railway tunnelling projects.

    PubMed

    Purnell, C J; Frommer, G; Chan, K; Auch, A A

    2004-01-01

    The construction of underground tunnels through radon-bearing rock poses a radiation health risk to tunnelling workers from exposure to radon gas and its radioactive decay products. This paper presents the development and practical application of a radon assessment strategy suitable for the measurement of radon in tunnelling work environments in Hong Kong. The assessment strategy was successfully evaluated on a number of underground railway tunnelling projects over a 3 y period. Radon measurements were undertaken using a combination of portable radon measurement equipment and track etch detectors (TEDs) deployed throughout the tunnels. The radon gas monitoring results were used to confirm that ventilation rates were adequate or identified, at an early stage, when further action to reduce radon levels was required. Exposure dose estimates based on the TED results showed that the exposure of tunnel workers to radon did not exceed 3 mSv per annum for the duration of each project. PMID:15103065

  20. Health impact assessment and evaluation of a Roma housing project in Hungary.

    PubMed

    Molnár, Agnes; Adány, Róza; Adám, Balázs; Gulis, Gabriel; Kósa, Karolina

    2010-11-01

    An outstanding feature of marginalized Roma communities is their severely substandard living conditions, which contribute to their worse health status compared to the majority. However, health consequences of international and local-level housing initiatives in most cases fail to be assessed prospectively or evaluated after implementation. This paper summarizes the result of a retrospective health impact assessment of a Roma housing project in Hungary in comparison with the outcome evaluation of the same project. Positive impacts on education, in- and outdoor conditions were noted, but negative impacts on social networks, housing expenses and maintenance, neighbourhood satisfaction and no sustained change in health status or employment were identified. Recommendations are made to improve efficiency and sustainability of housing development initiatives among disadvantaged populations. PMID:20801071