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Sample records for antarctic marine pseudoalteromonas

  1. Anti-biofilm activity of the Antarctic marine bacterium Pseudoalteromonas haloplanktis TAC125.

    PubMed

    Papa, Rosanna; Parrilli, Ermenegilda; Sannino, Filomena; Barbato, Gaetano; Tutino, Maria Luisa; Artini, Marco; Selan, Laura

    2013-06-01

    Considering the increasing impact of bacterial biofilms on human health, industrial and food-processing activities, the interest in the development of new approaches for the prevention and treatment of adhesion and biofilm formation capabilities has increased. A viable approach should target adhesive properties without affecting bacterial vitality in order to avoid the rapid appearance of escape mutants. It is known that marine bacteria belonging to the genus Pseudoalteromonas produce compounds of biotechnological interest, including anti-biofilm molecules. Pseudoalteromonas haloplanktis TAC125 is the first Antarctic Gram-negative strain whose genome was sequenced. In this work the anti-biofilm activity of P. haloplanktis supernatant was examined on different staphylococci. Results obtained demonstrated that supernatant of P. haloplanktis, grown in static condition, inhibits biofilm of Staphylococcus epidermidis. In order to define the chemical nature of the biofilm-inhibiting compound, the supernatant was subject to various treatments. Data reported demonstrated that the biologically active component is sensible to treatment with sodium periodate suggesting its saccharidic nature. PMID:23411371

  2. Antarctic marine bacterium Pseudoalteromonas sp. 22b as a source of cold-adapted beta-galactosidase.

    PubMed

    Turkiewicz, Marianna; Kur, Józef; Białkowska, Aneta; Cieśliński, Hubert; Kalinowska, Halina; Bielecki, Stanisław

    2003-07-01

    The marine, psychrotolerant, rod-shaped and Gram-negative bacterium 22b (the best of 41 beta-galactosidase producers out of 107 Antarctic strains subjected to screening), classified as Pseudoalteromonas sp. based on 16S rRNA gene sequence, isolated from the alimentary tract of Antarctic krill Thyssanoessa macrura, synthesizes an intracellular cold-adapted beta-galactosidase, which efficiently hydrolyzes lactose at 0-20 degrees C, as indicated by its specific activity of 21-67 U mg(-1) of protein (11-35% of maximum activity) in this temperature range, as well as k(cat) of 157 s(-1), and k(cat)/K(m) of 47.5 mM(-1) s(-1) at 20 degrees C. The maximum enzyme synthesis (lactose as a sufficient inducer) was observed at 6 degrees C, thus below the optimum growth temperature of the bacterium (15 degrees C). The enzyme extracted from cells was purified to homogeneity (25% recovery) by using the fast, three-step procedure, including affinity chromatography on PABTG-Sepharose. The enzyme is a tetramer composed of roughly 115 kDa subunits. It is maximally active at 40 degrees C (190 U mg(-1) of protein) and pH 6.0-8.0. PNPG is its preferred substrate (50% higher activity than against ONPG). The Pseudoalteromonas sp. 22b beta-galactosidase is activated by thiol compounds (70% rise in activity in the presence of 10 mM dithiotreitol), some metal ions (K(+), Na(+), Mn(2+)-40% increase, Mg(2+)-15% enhancement), and markedly inactivated by pCMB and heavy metal ions, particularly Cu(2+). Noteworthy, Ca(2+) ions do not affect the enzyme activity, and the homogeneous protein is stable at 4 degrees C for at least 30 days without any stabilizers.

  3. Structural flexibility of the heme cavity in the cold-adapted truncated hemoglobin from the Antarctic marine bacterium Pseudoalteromonas haloplanktis TAC125.

    PubMed

    Giordano, Daniela; Pesce, Alessandra; Boechi, Leonardo; Bustamante, Juan Pablo; Caldelli, Elena; Howes, Barry D; Riccio, Alessia; di Prisco, Guido; Nardini, Marco; Estrin, Dario; Smulevich, Giulietta; Bolognesi, Martino; Verde, Cinzia

    2015-08-01

    Truncated hemoglobins build one of the three branches of the globin protein superfamily. They display a characteristic two-on-two α-helical sandwich fold and are clustered into three groups (I, II and III) based on distinct structural features. Truncated hemoglobins are present in eubacteria, cyanobacteria, protozoa and plants. Here we present a structural, spectroscopic and molecular dynamics characterization of a group-II truncated hemoglobin, encoded by the PSHAa0030 gene from Pseudoalteromonas haloplanktis TAC125 (Ph-2/2HbO), a cold-adapted Antarctic marine bacterium hosting one flavohemoglobin and three distinct truncated hemoglobins. The Ph-2/2HbO aquo-met crystal structure (at 2.21 Å resolution) shows typical features of group-II truncated hemoglobins, namely the two-on-two α-helical sandwich fold, a helix Φ preceding the proximal helix F, and a heme distal-site hydrogen-bonded network that includes water molecules and several distal-site residues, including His(58)CD1. Analysis of Ph-2/2HbO by electron paramagnetic resonance, resonance Raman and electronic absorption spectra, under varied solution conditions, shows that Ph-2/2HbO can access diverse heme ligation states. Among these, detection of a low-spin heme hexa-coordinated species suggests that residue Tyr(42)B10 can undergo large conformational changes in order to act as the sixth heme-Fe ligand. Altogether, the results show that Ph-2/2HbO maintains the general structural features of group-II truncated hemoglobins but displays enhanced conformational flexibility in the proximity of the heme cavity, a property probably related to the functional challenges, such as low temperature, high O2 concentration and low kinetic energy of molecules, experienced by organisms living in the Antarctic environment.

  4. Highly brominated antimicrobial metabolites from a marine Pseudoalteromonas sp.

    PubMed

    Fehér, Domonkos; Barlow, Russell; McAtee, Jesse; Hemscheidt, Thomas K

    2010-11-29

    Extracts of a marine Pseudoalteromonas sp. (CMMED 290) isolated from the surface of a nudibranch collected in Kaneohe Bay, Oahu, displayed significant antimicrobial activity against methicillin-resistant Staphylococcus aureus. Bioassay-guided fractionation of the lipophilic extract led to the isolation and structure elucidation of two new highly brominated compounds, 2,3,5,7-tetrabromobenzofuro[3,2-b]pyrrole (1) and 4,4',6-tribromo-2,2'-biphenol (2). In addition, we have identified the known compounds pentabromopseudilin and bromophene. We describe the isolation and structure elucidation of the compounds 1 and 2 together with their antimicrobial activities against methicillin-resistant Staphylococcus aureus. PMID:20973551

  5. Sulfonamide inhibition studies of the γ-carbonic anhydrase from the Antarctic bacterium Pseudoalteromonas haloplanktis.

    PubMed

    Vullo, Daniela; De Luca, Viviana; Del Prete, Sonia; Carginale, Vincenzo; Scozzafava, Andrea; Capasso, Clemente; Supuran, Claudiu T

    2015-09-01

    The Antarctic bacterium Pseudoalteromonas haloplanktis encodes for a γ-class carbonic anhydrase (CA, EC 4.2.1.1), which was cloned, purified and characterized. The enzyme (PhaCAγ) has a good catalytic activity for the physiologic reaction of CO2 hydration to bicarbonate and protons, with a k(cat) of 1.4×10(5) s(-1) and a k(cat)/K(m) of 1.9×10(6) M(-1)×s(-1). A series of sulfonamides and a sulfamate were investigated as inhibitors of the new enzyme. Methazolamide and indisulam showed the best inhibitory properties (K(I)s of 86.7-94.7 nM). This contribution shed new light on γ-CAs inhibition profiles with a relevant class of pharmacologic agents.

  6. Sulfonamide inhibition studies of the γ-carbonic anhydrase from the Antarctic bacterium Pseudoalteromonas haloplanktis.

    PubMed

    Vullo, Daniela; De Luca, Viviana; Del Prete, Sonia; Carginale, Vincenzo; Scozzafava, Andrea; Capasso, Clemente; Supuran, Claudiu T

    2015-09-01

    The Antarctic bacterium Pseudoalteromonas haloplanktis encodes for a γ-class carbonic anhydrase (CA, EC 4.2.1.1), which was cloned, purified and characterized. The enzyme (PhaCAγ) has a good catalytic activity for the physiologic reaction of CO2 hydration to bicarbonate and protons, with a k(cat) of 1.4×10(5) s(-1) and a k(cat)/K(m) of 1.9×10(6) M(-1)×s(-1). A series of sulfonamides and a sulfamate were investigated as inhibitors of the new enzyme. Methazolamide and indisulam showed the best inhibitory properties (K(I)s of 86.7-94.7 nM). This contribution shed new light on γ-CAs inhibition profiles with a relevant class of pharmacologic agents. PMID:26174556

  7. Draft Genome Sequence of Marine Sponge Symbiont Pseudoalteromonas luteoviolacea IPB1, Isolated from Hilo, Hawaii.

    PubMed

    Sakai-Kawada, Francis E; Yakym, Christopher J; Helmkampf, Martin; Hagiwara, Kehau; Ip, Courtney G; Antonio, Brandi J; Armstrong, Ellie; Ulloa, Wesley J; Awaya, Jonathan D

    2016-01-01

    We report here the 6.0-Mb draft genome assembly of Pseudoalteromonas luteoviolacea strain IPB1 that was isolated from the Hawaiian marine sponge Iotrochota protea Genome mining complemented with bioassay studies will elucidate secondary metabolite biosynthetic pathways and will help explain the ecological interaction between host sponge and microorganism. PMID:27660784

  8. Draft Genome Sequence of Marine Sponge Symbiont Pseudoalteromonas luteoviolacea IPB1, Isolated from Hilo, Hawaii

    PubMed Central

    Yakym, Christopher J.; Helmkampf, Martin; Hagiwara, Kehau; Ip, Courtney G.; Antonio, Brandi J.; Armstrong, Ellie; Ulloa, Wesley J.; Awaya, Jonathan D.

    2016-01-01

    We report here the 6.0-Mb draft genome assembly of Pseudoalteromonas luteoviolacea strain IPB1 that was isolated from the Hawaiian marine sponge Iotrochota protea. Genome mining complemented with bioassay studies will elucidate secondary metabolite biosynthetic pathways and will help explain the ecological interaction between host sponge and microorganism. PMID:27660784

  9. [Degradation of fucoidan by the marine proteobacterium Pseudoalteromonas citrea].

    PubMed

    Bakunina, I Iu; Nedashkovskaia, O I; Alekseeva, S A; Ivanova, E P; Romanenko, L A; Gorshkova, N M; Isakov, V V; Zviagintseva, T N; Mikhaĭlov, V V

    2002-01-01

    It was found that Pseudoalteromonas citrea strains KMM 3296 and KMM 3298 isolated from the brown algae Fucus evanescens and Chorda filum, respectively, and strain 3297 isolated from the sea cucumber Apostichopus japonicus are able to degrade fucoidans. The fucoidanases of these strains efficiently degraded the fucoidan of brown algae at pH 6.5-7.0 and remained active at 40-50 degrees C. The endo-type hydrolysis of fucoidan resulted in the formation of sulfated alpha-L-fucooligosaccharides. The other nine strains of P. citrea studied (including the type strain of this species), which were isolated from other habitats, were not able to degrade fucoidan.

  10. MALDI-TOF Mass Spectrometry Discriminates Known Species and Marine Environmental Isolates of Pseudoalteromonas.

    PubMed

    Emami, Kaveh; Nelson, Andrew; Hack, Ethan; Zhang, Jinwei; Green, David H; Caldwell, Gary S; Mesbahi, Ehsan

    2016-01-01

    The genus Pseudoalteromonas constitutes an ecologically significant group of marine Gammaproteobacteria with potential biotechnological value as producers of bioactive compounds and of enzymes. Understanding their roles in the environment and bioprospecting for novel products depend on efficient ways of identifying environmental isolates. Matrix Assisted Laser Desorption/Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) biotyping has promise as a rapid and reliable method of identifying and distinguishing between different types of bacteria, but has had relatively limited application to marine bacteria and has not been applied systematically to Pseudoalteromonas. Therefore, we constructed a MALDI-TOF MS database of 31 known Pseudoalteromonas species, to which new isolates can be compared by MALDI-TOF biotyping. The ability of MALDI-TOF MS to distinguish between species was scrutinized by comparison with 16S rRNA gene sequencing. The patterns of similarity given by the two approaches were broadly but not completely consistent. In general, the resolution of MALDI-TOF MS was greater than that of 16S rRNA gene sequencing. The database was tested with 13 environmental Pseudoalteromonas isolates from UK waters. All of the test strains could be identified to genus level by MALDI-TOF MS biotyping, but most could not be definitely identified to species level. We conclude that several of these isolates, and possibly most, represent new species. Thus, further taxonomic investigation of Pseudoalteromonas is needed before MALDI-TOF MS biotyping can be used reliably for species identification. It is, however, a powerful tool for characterizing and distinguishing among environmental isolates and can make an important contribution to taxonomic studies.

  11. MALDI-TOF Mass Spectrometry Discriminates Known Species and Marine Environmental Isolates of Pseudoalteromonas

    PubMed Central

    Emami, Kaveh; Nelson, Andrew; Hack, Ethan; Zhang, Jinwei; Green, David H.; Caldwell, Gary S.; Mesbahi, Ehsan

    2016-01-01

    The genus Pseudoalteromonas constitutes an ecologically significant group of marine Gammaproteobacteria with potential biotechnological value as producers of bioactive compounds and of enzymes. Understanding their roles in the environment and bioprospecting for novel products depend on efficient ways of identifying environmental isolates. Matrix Assisted Laser Desorption/Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) biotyping has promise as a rapid and reliable method of identifying and distinguishing between different types of bacteria, but has had relatively limited application to marine bacteria and has not been applied systematically to Pseudoalteromonas. Therefore, we constructed a MALDI-TOF MS database of 31 known Pseudoalteromonas species, to which new isolates can be compared by MALDI-TOF biotyping. The ability of MALDI-TOF MS to distinguish between species was scrutinized by comparison with 16S rRNA gene sequencing. The patterns of similarity given by the two approaches were broadly but not completely consistent. In general, the resolution of MALDI-TOF MS was greater than that of 16S rRNA gene sequencing. The database was tested with 13 environmental Pseudoalteromonas isolates from UK waters. All of the test strains could be identified to genus level by MALDI-TOF MS biotyping, but most could not be definitely identified to species level. We conclude that several of these isolates, and possibly most, represent new species. Thus, further taxonomic investigation of Pseudoalteromonas is needed before MALDI-TOF MS biotyping can be used reliably for species identification. It is, however, a powerful tool for characterizing and distinguishing among environmental isolates and can make an important contribution to taxonomic studies. PMID:26903983

  12. MALDI-TOF Mass Spectrometry Discriminates Known Species and Marine Environmental Isolates of Pseudoalteromonas.

    PubMed

    Emami, Kaveh; Nelson, Andrew; Hack, Ethan; Zhang, Jinwei; Green, David H; Caldwell, Gary S; Mesbahi, Ehsan

    2016-01-01

    The genus Pseudoalteromonas constitutes an ecologically significant group of marine Gammaproteobacteria with potential biotechnological value as producers of bioactive compounds and of enzymes. Understanding their roles in the environment and bioprospecting for novel products depend on efficient ways of identifying environmental isolates. Matrix Assisted Laser Desorption/Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) biotyping has promise as a rapid and reliable method of identifying and distinguishing between different types of bacteria, but has had relatively limited application to marine bacteria and has not been applied systematically to Pseudoalteromonas. Therefore, we constructed a MALDI-TOF MS database of 31 known Pseudoalteromonas species, to which new isolates can be compared by MALDI-TOF biotyping. The ability of MALDI-TOF MS to distinguish between species was scrutinized by comparison with 16S rRNA gene sequencing. The patterns of similarity given by the two approaches were broadly but not completely consistent. In general, the resolution of MALDI-TOF MS was greater than that of 16S rRNA gene sequencing. The database was tested with 13 environmental Pseudoalteromonas isolates from UK waters. All of the test strains could be identified to genus level by MALDI-TOF MS biotyping, but most could not be definitely identified to species level. We conclude that several of these isolates, and possibly most, represent new species. Thus, further taxonomic investigation of Pseudoalteromonas is needed before MALDI-TOF MS biotyping can be used reliably for species identification. It is, however, a powerful tool for characterizing and distinguishing among environmental isolates and can make an important contribution to taxonomic studies. PMID:26903983

  13. Expression and enzymatic characterization of a cold-adapted β-agarase from Antarctic bacterium Pseudoalteromonas sp. NJ21

    NASA Astrophysics Data System (ADS)

    Li, Jiang; Sha, Yujie

    2015-03-01

    An agar-degrading bacterium, designated as Pseudoalteromonas sp. NJ21, was isolated from an Antarctic sediment sample. The agarase gene aga1161 from Pseudoalteromonas sp. NJ21 consisting of a 2 382-bp coding region was cloned. The gene encodes a 793-amino acids protein and was found to possess characteristic features of the Glyco_hydro_42 family. The recombinant agarase (rAga1161) was overexpressed in Escherichia coli and purified as a fusion protein. Enzyme activity analysis revealed that the optimum temperature and pH for the purified recombinant agarase were 30-40°C and 8.0, respectively. rAga1161 was found to maintain as much as 80% of its maximum activity at 10°C, which is typical of a coldadapted enzyme. The pattern of agar hydrolysis demonstrated that the enzyme is an β-agarase, producing neoagarobiose (NA2) as the final main product. Furthermore, this work is the first proof of an agarolytic activity in Antarctic bacteria and these results indicate the potential for the Antarctic agarase as a catalyst in medicine, food and cosmetic industries.

  14. The anti-biofilm activity secreted by a marine Pseudoalteromonas strain.

    PubMed

    Klein, Géraldine L; Soum-Soutéra, Emmanuelle; Guede, Zakoua; Bazire, Alexis; Compère, Chantal; Dufour, Alain

    2011-09-01

    Bacterial biofilms occur on all submerged structures in marine environments. The authors previously reported that the marine bacterium Pseudoalteromonas sp. 3J6 secretes antibiofilm activity. Here, it was discovered that another Pseudoalteromonas sp. strain, D41, inhibited the development of strain 3J6 in mixed biofilms. Confocal laser scanning microscope observations revealed that the culture supernatant of strain D41 impaired biofilm formation of strain 3J6 and another marine bacterium. A microtiter plate assay of the antibiofilm activity was set up and validated with culture supernatants of Pseudoalteromonas sp. 3J6. This assay was used to determine the spectra of action of strains D41 and 3J6. Each culture supernatant impaired the biofilm development of 13 marine bacteria out of 18. However, differences in the spectra of action and the physical behaviours of the antibiofilm molecules suggest that the latter are not identical. They nevertheless share the originality of being devoid of antibacterial activity against planktonic bacteria. PMID:21895460

  15. Influence of growth temperature on lipid and phosphate contents of surface polysaccharides from the antarctic bacterium Pseudoalteromonas haloplanktis TAC 125.

    PubMed

    Corsaro, M Michela; Lanzetta, Rosa; Parrilli, Ermenegilda; Parrilli, Michelangelo; Tutino, M Luisa; Ummarino, Salvatore

    2004-01-01

    The chemical structural variations induced by different growth temperatures in the lipooligosaccharide and exopolysaccharide components extracted from the Antarctic bacterium Pseudoalteromonas haloplanktis TAC 125 are described. The increase in phosphorylation with the increase in growth temperature seems to be general, because it happens not only for the lipooligosaccharide but also for the exopolysaccharide. Structural variations in the lipid components of lipid A also occur. In addition, free lipid A is found at both 25 and 4 degrees C but not at 15 degrees C, which is the optimal growth temperature, suggesting a incomplete biosynthesis of the lipooligosaccharide component under the first two temperature conditions.

  16. Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1.

    PubMed

    Duhaime, Melissa Beth; Wichels, Antje; Waldmann, Jost; Teeling, Hanno; Glöckner, Frank Oliver

    2011-01-01

    Marine phages have an astounding global abundance and ecological impact. However, little knowledge is derived from phage genomes, as most of the open reading frames in their small genomes are unknown, novel proteins. To infer potential functional and ecological relevance of sequenced marine Pseudoalteromonas phage H105/1, two strategies were used. First, similarity searches were extended to include six viral and bacterial metagenomes paired with their respective environmental contextual data. This approach revealed 'ecogenomic' patterns of Pseudoalteromonas phage H105/1, such as its estuarine origin. Second, intrinsic genome signatures (phylogenetic, codon adaptation and tetranucleotide (tetra) frequencies) were evaluated on a resolved intra-genomic level to shed light on the evolution of phage functional modules. On the basis of differential codon adaptation of Phage H105/1 proteins to the sequenced Pseudoalteromonas spp., regions of the phage genome with the most 'host'-adapted proteins also have the strongest bacterial tetra signature, whereas the least 'host'-adapted proteins have the strongest phage tetra signature. Such a pattern may reflect the evolutionary history of the respective phage proteins and functional modules. Finally, analysis of the structural proteome identified seven proteins that make up the mature virion, four of which were previously unknown. This integrated approach combines both novel and classical strategies and serves as a model to elucidate ecological inferences and evolutionary relationships from phage genomes that typically abound with unknown gene content.

  17. Antibiofilm Activity of the Marine Bacterium Pseudoalteromonas sp. Strain 3J6▿

    PubMed Central

    Dheilly, Alexandra; Soum-Soutéra, Emmanuelle; Klein, Géraldine L.; Bazire, Alexis; Compère, Chantal; Haras, Dominique; Dufour, Alain

    2010-01-01

    Biofilm formation results in medical threats or economic losses and is therefore a major concern in a variety of domains. In two-species biofilms of marine bacteria grown under dynamic conditions, Pseudoalteromonas sp. strain 3J6 formed mixed biofilms with Bacillus sp. strain 4J6 but was largely predominant over Paracoccus sp. strain 4M6 and Vibrio sp. strain D01. The supernatant of Pseudoalteromonas sp. 3J6 liquid culture (SN3J6) was devoid of antibacterial activity against free-living Paracoccus sp. 4M6 and Vibrio sp. D01 cells, but it impaired their ability to grow as single-species biofilms and led to higher percentages of nonviable cells in 48-h biofilms. Antibiofilm molecules of SN3J6 were able to coat the glass surfaces used to grow biofilms and reduced bacterial attachment about 2-fold, which might partly explain the biofilm formation defect but not the loss of cell viability. SN3J6 had a wide spectrum of activity since it affected all Gram-negative marine strains tested except other Pseudoalteromonas strains. Biofilm biovolumes of the sensitive strains were reduced 3- to 530-fold, and the percentages of nonviable cells were increased 3- to 225-fold. Interestingly, SN3J6 also impaired biofilm formation by three strains belonging to the human-pathogenic species Pseudomonas aeruginosa, Salmonella enterica, and Escherichia coli. Such an antibiofilm activity is original and opens up a variety of applications for Pseudoalteromonas sp. 3J6 and/or its active exoproducts in biofilm prevention strategies. PMID:20363799

  18. Spotlight on Antimicrobial Metabolites from the Marine Bacteria Pseudoalteromonas: Chemodiversity and Ecological Significance.

    PubMed

    Offret, Clément; Desriac, Florie; Le Chevalier, Patrick; Mounier, Jérôme; Jégou, Camille; Fleury, Yannick

    2016-07-08

    This review is dedicated to the antimicrobial metabolite-producing Pseudoalteromonas strains. The genus Pseudoalteromonas hosts 41 species, among which 16 are antimicrobial metabolite producers. To date, a total of 69 antimicrobial compounds belonging to 18 different families have been documented. They are classified into alkaloids, polyketides, and peptides. Finally as Pseudoalteromonas strains are frequently associated with macroorganisms, we can discuss the ecological significance of antimicrobial Pseudoalteromonas as part of the resident microbiota.

  19. Spotlight on Antimicrobial Metabolites from the Marine Bacteria Pseudoalteromonas: Chemodiversity and Ecological Significance

    PubMed Central

    Offret, Clément; Desriac, Florie; Le Chevalier, Patrick; Mounier, Jérôme; Jégou, Camille; Fleury, Yannick

    2016-01-01

    This review is dedicated to the antimicrobial metabolite-producing Pseudoalteromonas strains. The genus Pseudoalteromonas hosts 41 species, among which 16 are antimicrobial metabolite producers. To date, a total of 69 antimicrobial compounds belonging to 18 different families have been documented. They are classified into alkaloids, polyketides, and peptides. Finally as Pseudoalteromonas strains are frequently associated with macroorganisms, we can discuss the ecological significance of antimicrobial Pseudoalteromonas as part of the resident microbiota. PMID:27399731

  20. Discovery of a novel iota carrageenan sulfatase isolated from the marine bacterium Pseudoalteromonas carrageenovora

    NASA Astrophysics Data System (ADS)

    Genicot, Sabine; Groisillier, Agnès; Rogniaux, Hélène; Meslet-Cladière, Laurence; Barbeyron, Tristan; Helbert, William

    2014-08-01

    Carrageenans are sulfated polysaccharides extracted from the cell wall of some marine red algae. These polysaccharides are widely used as gelling, stabilizing, and viscosifying agents in the food and pharmaceutical industries. Since the rheological properties of these polysaccharides depend on their sulfate content, we screened several isolated marine bacteria for carrageenan specific sulfatase activity, in the aim of developing enzymatic bioconversion of carrageenans. As a result of the screening, an iota-carrageenan sulfatase was detected in the cell-free lysate of the marine bacterium Pseudoalteromonas carrageenovora strain PscT. It was purified through Phenyl Sepharose and Diethylaminoethyl Sepharose chromatography. The pure enzyme, Psc ?-CgsA, was characterized. It had a molecular weight of 115.9 kDaltons and exhibited an optimal activity/stability at pH ~8.3 and at 40°C ± 5°C. It was inactivated by phenylmethylsulfonyl fluoride but not by ethylene diamine tetraacetic acid. Psc ?-CgsA specifically catalyzes the hydrolysis of the 4-S sulfate of iota-carrageenan. The purified enzyme could transform iota-carrageenan into hybrid iota-/alpha- or pure alpha-carrageenan under controlled conditions. The gene encoding Psc ?-CgsA, a protein of 1038 amino acids, was cloned into Escherichia coli, and the sequence analysis revealed that Psc ?-CgsA has more than 90% sequence identity with a putative uncharacterized protein Q3IKL4 from the marine strain Pseudoalteromonas haloplanktis TAC 125, but besides this did not share any homology to characterized sulfatases. Phylogenetic studies show that P. carrageenovora sulfatase thus represents the first characterized member of a new sulfatase family, with a C-terminal domain having strong similarity with the superfamily of amidohydrolases, highlighting the still unexplored diversity of marine polysaccharide modifying enzymes.

  1. Discovery of a novel iota carrageenan sulfatase isolated from the marine bacterium Pseudoalteromonas carrageenovora

    PubMed Central

    Genicot, Sabine M.; Groisillier, Agnès; Rogniaux, Hélène; Meslet-Cladière, Laurence; Barbeyron, Tristan; Helbert, William

    2014-01-01

    Carrageenans are sulfated polysaccharides extracted from the cell wall of some marine red algae. These polysaccharides are widely used as gelling, stabilizing, and viscosifying agents in the food and pharmaceutical industries. Since the rheological properties of these polysaccharides depend on their sulfate content, we screened several isolated marine bacteria for carrageenan specific sulfatase activity, in the aim of developing enzymatic bioconversion of carrageenans. As a result of the screening, an iota-carrageenan sulfatase was detected in the cell-free lysate of the marine bacterium Pseudoalteromonas carrageenovora strain PscT. It was purified through Phenyl Sepharose and Diethylaminoethyl Sepharose chromatography. The pure enzyme, Psc ι-CgsA, was characterized. It had a molecular weight of 115.9 kDaltons and exhibited an optimal activity/stability at pH ~8.3 and at 40 ± 5°C. It was inactivated by phenylmethylsulfonyl fluoride but not by ethylene diamine tetraacetic acid. Psc ι-CgsA specifically catalyzes the hydrolysis of the 4-S sulfate of iota-carrageenan. The purified enzyme could transform iota-carrageenan into hybrid iota-/alpha- or pure alpha-carrageenan under controlled conditions. The gene encoding Psc ι-CgsA, a protein of 1038 amino acids, was cloned into Escherichia coli, and the sequence analysis revealed that Psc ι-CgsA has more than 90% sequence identity with a putative uncharacterized protein Q3IKL4 from the marine strain Pseudoalteromonas haloplanktis TAC 125, but besides this did not share any homology to characterized sulfatases. Phylogenetic studies show that P. carrageenovora sulfatase thus represents the first characterized member of a new sulfatase family, with a C-terminal domain having strong similarity with the superfamily of amidohydrolases, highlighting the still unexplored diversity of marine polysaccharide modifying enzymes. PMID:25207269

  2. Cloning, characterization and anion inhibition studies of a new γ-carbonic anhydrase from the Antarctic bacterium Pseudoalteromonas haloplanktis.

    PubMed

    De Luca, Viviana; Vullo, Daniela; Del Prete, Sonia; Carginale, Vincenzo; Scozzafava, Andrea; Osman, Sameh M; AlOthman, Zeid; Supuran, Claudiu T; Capasso, Clemente

    2015-08-01

    A new γ-class carbonic anhydrase (CA, EC 4.2.1.1) was cloned, purified and characterized from the Antarctic bacterium Pseudoalteromonas haloplanktis, PhaCAγ. The enzyme has a medium-low catalytic activity for the physiologic reaction of CO2 hydration to bicarbonate and protons, with a kcat of 1.4×10(5)s(-1) and a kcat/Km of 1.9×10(6)M(-1)s(-1). An anion inhibition study of PhaCAγ with inorganic anions and small molecule inhibitors is also reported. Many anions present in sea water, such as chloride, fluoride, sulfate, iodide, but also others such as azide, perchlorate and tetrafluoroborate did not inhibit this enzyme. Pseudohalides such as cyanate, thiocyanate, cyanide, selenocyanide, and also bicarbonate, nitrate, nitrite and many complex inorganic anions showed inhibition in the millimolar range (KI in the range of 1.7-9.3mM). The best PhaCAγ inhibitors detected in this study were diethyldithiocarbamate (KI of 0.96 mM) as well as sulfamide, sulfamate, phenylboronic acid and phenylarsonic acid (KI in the range of 82-91 μM). Since γ-CAs are poorly understood at this moment, being present in carboxysomes and thus involved in photosynthesis, this study may be relevant for a better understanding of these processes in Antarctic bacteria/cyanobacteria. PMID:26145820

  3. Cloning, expression and characterization of a new agarase-encoding gene from marine Pseudoalteromonas sp.

    PubMed

    Lu, Xinzhi; Chu, Yan; Wu, Qianqian; Gu, Yuchao; Han, Feng; Yu, Wengong

    2009-10-01

    The beta-agarase gene agaA, cloned from a marine bacterium, Pseudoalteromonas sp. CY24, consists of 1,359 nucleotides encoding 453 amino acids in a sequence corresponding to a catalytic domain of glycosyl hydrolase family 16 (GH16) and a carbohydrate-binding module type 13 (CBM13). The recombinant enzyme is an endo-type agarase that hydrolyzes beta-1,4-linkages of agarose, yielding neoagarotetraose and neoagarohexaose as the predominant products. In two cleavage patterns, AgaA digested the smallest substrate, neoagarooctaose, into neoagarobiose, neoagarotetraose and neoagarohexaose. Site directed mutation was performed to investigate the differences between AgaA and AgaD of Vibrio sp. PO-303, identifying residues V(109)VTS(112) as playing a key role in the enzyme reaction. PMID:19504047

  4. Large-scale biofilm cultivation of Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 for physiologic studies and drug discovery.

    PubMed

    Parrilli, Ermenegilda; Ricciardelli, Annarita; Casillo, Angela; Sannino, Filomena; Papa, Rosanna; Tilotta, Marco; Artini, Marco; Selan, Laura; Corsaro, Maria Michela; Tutino, Maria Luisa

    2016-03-01

    Microbial biofilms are mainly studied due to detrimental effects on human health but they are also well established in industrial biotechnology for the production of chemicals. Moreover, biofilm can be considered as a source of novel drugs since the conditions prevailing within biofilm can allow the production of specific metabolites. Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 when grown in biofilm condition produces an anti-biofilm molecule able to inhibit the biofilm of the opportunistic pathogen Staphylococcus epidermidis. In this paper we set up a P. haloplanktis TAC125 biofilm cultivation methodology in automatic bioreactor. The biofilm cultivation was designated to obtain two goals: (1) the scale up of cell-free supernatant production in an amount necessary for the anti-biofilm molecule/s purification; (2) the recovery of P. haloplanktis TAC125 cells grown in biofilm for physiological studies. We set up a fluidized-bed reactor fermentation in which floating polystyrene supports were homogeneously mixed, exposing an optimal air-liquid interface to let bacterium biofilm formation. The proposed methodology allowed a large-scale production of anti-biofilm molecule and paved the way to study differences between P. haloplanktis TAC125 cells grown in biofilm and in planktonic conditions. In particular, the modifications occurring in the lipopolysaccharide of cells grown in biofilm were investigated.

  5. Pseudoalteromonas bacteriolytica sp. nov., a marine bacterium that is the causative agent of red spot disease of Laminaria japonica.

    PubMed

    Sawabe, T; Makino, H; Tatsumi, M; Nakano, K; Tajima, K; Iqbal, M M; Yumoto, I; Ezura, Y; Christen, R

    1998-07-01

    An aerobic, polarly flagellated marine bacterium that produces a prodigiosin-like pigment was isolated from the red-spotted culture beds of Laminaria japonica. Five isolates had unique bacteriolytic activity for both Gram-positive and -negative bacteria, which had never been observed among Alteromonas or related species. The isolates were identified as the causative agent of red spot disease of L. japonica seeds. The phenotypic features of the isolates were similar to these of Pseudoalteromonas rubra ATCC 29570T, but they could be differentiated using 10 traits (growth at 37 degrees C, requirement for organic growth factors, bacteriolytic activity, utilization of sucrose, N-acetylglucosamine, fumarate, succinate, D-galactose, L-proline and acetate). The G+C content of DNAs from the isolates was 44-46 mol%. The isolates constitute a new species, distinct from the other Alteromonas and Pseudoalteromonas species, as shown by DNA-DNA hybridization experiments and phylogenetic clustering of 16S rRNA gene sequences, for which the name Pseudoalteromonas bacteriolytica sp. nov. (type strain = IAM 14595T) is proposed. A set of phenotypic features which differentiate this new species from closely related Pseudoalteromonas and Alteromonas species is provided. PMID:9734030

  6. Genome analysis of Pseudoalteromonas flavipulchra JG1 reveals various survival advantages in marine environment

    PubMed Central

    2013-01-01

    Background Competition between bacteria for habitat and resources is very common in the natural environment and is considered to be a selective force for survival. Many strains of the genus Pseudoalteromonas were confirmed to produce bioactive compounds that provide those advantages over their competitors. In our previous study, P. flavipulchra JG1 was found to synthesize a Pseudoalteromonas flavipulchra antibacterial Protein (PfaP) with L-amino acid oxidase activity and five small chemical compounds, which were the main competitive agents of the strain. In addition, the genome of this bacterium has been previously sequenced as Whole Genome Shotgun project (PMID: 22740664). In this study, more extensive genomic analysis was performed to identify specific genes or gene clusters which related to its competitive feature, and further experiments were carried out to confirm the physiological roles of these genes when competing with other microorganisms in marine environment. Results The antibacterial protein PfaP may also participate in the biosynthesis of 6-bromoindolyl-3-acetic acid, indicating a synergistic effect between the antibacterial macromolecule and small molecules. Chitinases and quorum quenching enzymes present in P. flavipulchra, which coincide with great chitinase and acyl homoserine lactones degrading activities of strain JG1, suggest other potential mechanisms contribute to antibacterial/antifungal activities. Moreover, movability and rapid response mechanisms to phosphorus starvation and other stresses, such as antibiotic, oxidative and heavy metal stress, enable JG1 to adapt to deleterious, fluctuating and oligotrophic marine environments. Conclusions The genome of P. flavipulchra JG1 exhibits significant genetic advantages against other microorganisms, encoding antimicrobial agents as well as abilities to adapt to various adverse environments. Genes involved in synthesis of various antimicrobial substances enriches the antagonistic mechanisms of P

  7. Identification of a Marine Agarolytic Pseudoalteromonas Isolate and Characterization of Its Extracellular Agarase

    PubMed Central

    Vera, Jorge; Alvarez, Raul; Murano, Erminio; Slebe, Juan Carlos; Leon, Oscar

    1998-01-01

    The phenotypic and agarolytic features of an unidentified marine bacteria that was isolated from the southern Pacific coast was investigated. The strain was gram negative, obligately aerobic, and polarly flagellated. On the basis of several phenotypic characters and a phylogenetic analysis of the genes coding for the 16S rRNA, this strain was identified as Pseudoalteromonas antarctica strain N-1. In solid agar, this isolate produced a diffusible agarase that caused agar softening around the colonies. An extracellular agarase was purified by ammonium sulfate precipitation, gel filtration, and ion-exchange chromatography on DEAE-cellulose. The purified protein was determined to be homogeneous on the basis of sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and it had a molecular mass of 33 kDa. The enzyme hydrolyzed the β-1,4-glycosydic linkages of agar, yielding neoagarotetraose and neoagarohexaose as the main products, and exhibited maximal activity at pH 7. The enzyme was stable at temperatures up to 30°C, and its activity was not affected by salt concentrations up to 0.5 M NaCl. PMID:9797294

  8. Ecology of antarctic marine sponges: an overview.

    PubMed

    McClintock, James B; Amsler, Charles D; Baker, Bill J; van Soest, Rob W M

    2005-04-01

    Sponges are important components of marine benthic communities of Antarctica. Numbers of species are high, within the lower range for tropical latitudes, similar to those in the Arctic, and comparable or higher than those of temperate marine environments. Many have circumpolar distributions and in some habitats hexactinellids dominate benthic biomass. Antarctic sponge assemblages contribute considerable structural heterogeneity for colonizing epibionts. They also represent a significant source of nutrients to prospective predators, including a suite of spongivorous sea stars whose selective foraging behaviors have important ramifications upon community structure. The highly seasonal plankton blooms that typify the Antarctic continental shelf are paradoxical when considering the planktivorous diets of sponges. Throughout much of the year Antarctic sponges must either exploit alternate sources of nutrition such as dissolved organic carbon or be physiologically adapted to withstand resource constraints. In contrast to predictions that global patterns of predation should select for an inverse correlation between latitude and chemical defenses in marine sponges, such defenses are not uncommon in Antarctic sponges. Some species sequester their defensive metabolites in the outermost layers where they are optimally effective against sea star predation. Secondary metabolites have also been shown to short-circuit molting in sponge-feeding amphipods and prevent fouling by diatoms. Coloration in Antarctic sponges may be the result of relict pigments originally selected for aposematism or UV screens yet conserved because of their defensive properties. This hypothesis is supported by the bioactive properties of pigments examined to date in a suite of common Antarctic sponges.

  9. Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea

    SciTech Connect

    Lara, Elena; Holmfeldt, Karin; Solonenko, Natalie; Sà, Elisabet Laia; Ignacio-Espinoza, J. Cesar; Cornejo-Castillo, Francisco M.; Verberkmoes, Nathan C.; Vaqué, Dolors; Sullivan, Matthew B.; Acinas, Silvia G.; Kellogg, Christina A.

    2015-01-14

    Marine viruses (phages) alter bacterial diversity and evolution with impacts on marine biogeochemical cycles, and yet few well-developed model systems limit opportunities for hypothesis testing. We isolate phage B8b from the Mediterranean Sea using Pseudoalteromonas sp. QC-44 as a host and characterize it using myriad techniques. Morphologically, phage B8b was classified as a member of the Siphoviridae family. One-step growth analyses showed that this siphovirus had a latent period of 70 min and released 172 new viral particles per cell. In the host range analysis against 89 bacterial host strains revealed that phage B8b infected 3 Pseudoalteromonas strains (52 tested, >99.9% 16S rRNA gene nucleotide identity) and 1 non-Pseudoaltermonas strain belonging to Alteromonas sp. (37 strains from 6 genera tested), which helps bound the phylogenetic distance possible in a phage-mediated horizontal gene transfer event. The Pseudoalteromonas phage B8b genome size was 42.7 kb, with clear structural and replication modules where the former were delineated leveraging identification of 16 structural genes by virion structural proteomics, only 4 of which had any similarity to known structural proteins. In nature, this phage was common in coastal marine environments in both photic and aphotic layers (found in 26.5% of available viral metagenomes), but not abundant in any sample (average per sample abundance was 0.65% of the reads). Together these data improve our understanding of siphoviruses in nature, and provide foundational information for a new 'rare virosphere' phage-host model system.

  10. Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea

    DOE PAGES

    Lara, Elena; Holmfeldt, Karin; Solonenko, Natalie; Sà, Elisabet Laia; Ignacio-Espinoza, J. Cesar; Cornejo-Castillo, Francisco M.; Verberkmoes, Nathan C.; Vaqué, Dolors; Sullivan, Matthew B.; Acinas, Silvia G.; et al

    2015-01-14

    Marine viruses (phages) alter bacterial diversity and evolution with impacts on marine biogeochemical cycles, and yet few well-developed model systems limit opportunities for hypothesis testing. We isolate phage B8b from the Mediterranean Sea using Pseudoalteromonas sp. QC-44 as a host and characterize it using myriad techniques. Morphologically, phage B8b was classified as a member of the Siphoviridae family. One-step growth analyses showed that this siphovirus had a latent period of 70 min and released 172 new viral particles per cell. In the host range analysis against 89 bacterial host strains revealed that phage B8b infected 3 Pseudoalteromonas strains (52 tested,more » >99.9% 16S rRNA gene nucleotide identity) and 1 non-Pseudoaltermonas strain belonging to Alteromonas sp. (37 strains from 6 genera tested), which helps bound the phylogenetic distance possible in a phage-mediated horizontal gene transfer event. The Pseudoalteromonas phage B8b genome size was 42.7 kb, with clear structural and replication modules where the former were delineated leveraging identification of 16 structural genes by virion structural proteomics, only 4 of which had any similarity to known structural proteins. In nature, this phage was common in coastal marine environments in both photic and aphotic layers (found in 26.5% of available viral metagenomes), but not abundant in any sample (average per sample abundance was 0.65% of the reads). Together these data improve our understanding of siphoviruses in nature, and provide foundational information for a new 'rare virosphere' phage-host model system.« less

  11. Life-style and genome structure of marine Pseudoalteromonas siphovirus B8b isolated from the northwestern Mediterranean Sea.

    PubMed

    Lara, Elena; Holmfeldt, Karin; Solonenko, Natalie; Sà, Elisabet Laia; Ignacio-Espinoza, J Cesar; Cornejo-Castillo, Francisco M; Verberkmoes, Nathan C; Vaqué, Dolors; Sullivan, Matthew B; Acinas, Silvia G

    2015-01-01

    Marine viruses (phages) alter bacterial diversity and evolution with impacts on marine biogeochemical cycles, and yet few well-developed model systems limit opportunities for hypothesis testing. Here we isolate phage B8b from the Mediterranean Sea using Pseudoalteromonas sp. QC-44 as a host and characterize it using myriad techniques. Morphologically, phage B8b was classified as a member of the Siphoviridae family. One-step growth analyses showed that this siphovirus had a latent period of 70 min and released 172 new viral particles per cell. Host range analysis against 89 bacterial host strains revealed that phage B8b infected 3 Pseudoalteromonas strains (52 tested, >99.9% 16S rRNA gene nucleotide identity) and 1 non-Pseudoaltermonas strain belonging to Alteromonas sp. (37 strains from 6 genera tested), which helps bound the phylogenetic distance possible in a phage-mediated horizontal gene transfer event. The Pseudoalteromonas phage B8b genome size was 42.7 kb, with clear structural and replication modules where the former were delineated leveraging identification of 16 structural genes by virion structural proteomics, only 4 of which had any similarity to known structural proteins. In nature, this phage was common in coastal marine environments in both photic and aphotic layers (found in 26.5% of available viral metagenomes), but not abundant in any sample (average per sample abundance was 0.65% of the reads). Together these data improve our understanding of siphoviruses in nature, and provide foundational information for a new 'rare virosphere' phage-host model system. PMID:25587991

  12. Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea

    PubMed Central

    Lara, Elena; Holmfeldt, Karin; Solonenko, Natalie; Sà, Elisabet Laia; Ignacio-Espinoza, J. Cesar; Cornejo-Castillo, Francisco M.; Verberkmoes, Nathan C.; Vaqué, Dolors; Sullivan, Matthew B.; Acinas, Silvia G.

    2015-01-01

    Marine viruses (phages) alter bacterial diversity and evolution with impacts on marine biogeochemical cycles, and yet few well-developed model systems limit opportunities for hypothesis testing. Here we isolate phage B8b from the Mediterranean Sea using Pseudoalteromonas sp. QC-44 as a host and characterize it using myriad techniques. Morphologically, phage B8b was classified as a member of the Siphoviridae family. One-step growth analyses showed that this siphovirus had a latent period of 70 min and released 172 new viral particles per cell. Host range analysis against 89 bacterial host strains revealed that phage B8b infected 3 Pseudoalteromonas strains (52 tested, >99.9% 16S rRNA gene nucleotide identity) and 1 non-Pseudoaltermonas strain belonging to Alteromonas sp. (37 strains from 6 genera tested), which helps bound the phylogenetic distance possible in a phage-mediated horizontal gene transfer event. The Pseudoalteromonas phage B8b genome size was 42.7 kb, with clear structural and replication modules where the former were delineated leveraging identification of 16 structural genes by virion structural proteomics, only 4 of which had any similarity to known structural proteins. In nature, this phage was common in coastal marine environments in both photic and aphotic layers (found in 26.5% of available viral metagenomes), but not abundant in any sample (average per sample abundance was 0.65% of the reads). Together these data improve our understanding of siphoviruses in nature, and provide foundational information for a new ‘rare virosphere’ phage–host model system. PMID:25587991

  13. Liquid Chromatography-Mass Spectrometry-Based Rapid Secondary-Metabolite Profiling of Marine Pseudoalteromonas sp. M2.

    PubMed

    Kim, Woo Jung; Kim, Young Ok; Kim, Jin Hee; Nam, Bo-Hye; Kim, Dong-Gyun; An, Cheul Min; Lee, Jun Sik; Kim, Pan Soo; Lee, Hye Min; Oh, Joa-Sup; Lee, Jong Suk

    2016-01-20

    The ocean is a rich resource of flora, fauna, and food. A wild-type bacterial strain showing confluent growth on marine agar with antibacterial activity was isolated from marine water, identified using 16S rDNA sequence analysis as Pseudoalteromonas sp., and designated as strain M2. This strain was found to produce various secondary metabolites including quinolone alkaloids. Using high-resolution mass spectrometry (MS) and nuclear magnetic resonance (NMR) analysis, we identified nine secondary metabolites of 4-hydroxy-2-alkylquinoline (pseudane-III, IV, V, VI, VII, VIII, IX, X, and XI). Additionally, this strain produced two novel, closely related compounds, 2-isopentylqunoline-4-one and 2-(2,3-dimetylbutyl)qunoline-4-(1H)-one, which have not been previously reported from marine bacteria. From the metabolites produced by Pseudoalteromonas sp. M2, 2-(2,3-dimethylbutyl)quinolin-4-one, pseudane-VI, and pseudane-VII inhibited melanin synthesis in Melan-A cells by 23.0%, 28.2%, and 42.7%, respectively, wherein pseudane-VII showed the highest inhibition at 8 µg/mL. The results of this study suggest that liquid chromatography (LC)-MS/MS-based metabolite screening effectively improves the efficiency of novel metabolite discovery. Additionally, these compounds are promising candidates for further bioactivity development.

  14. Liquid Chromatography-Mass Spectrometry-Based Rapid Secondary-Metabolite Profiling of Marine Pseudoalteromonas sp. M2

    PubMed Central

    Kim, Woo Jung; Kim, Young Ok; Kim, Jin Hee; Nam, Bo-Hye; Kim, Dong-Gyun; An, Cheul Min; Lee, Jun Sik; Kim, Pan Soo; Lee, Hye Min; Oh, Joa-Sup; Lee, Jong Suk

    2016-01-01

    The ocean is a rich resource of flora, fauna, and food. A wild-type bacterial strain showing confluent growth on marine agar with antibacterial activity was isolated from marine water, identified using 16S rDNA sequence analysis as Pseudoalteromonas sp., and designated as strain M2. This strain was found to produce various secondary metabolites including quinolone alkaloids. Using high-resolution mass spectrometry (MS) and nuclear magnetic resonance (NMR) analysis, we identified nine secondary metabolites of 4-hydroxy-2-alkylquinoline (pseudane-III, IV, V, VI, VII, VIII, IX, X, and XI). Additionally, this strain produced two novel, closely related compounds, 2-isopentylqunoline-4-one and 2-(2,3-dimetylbutyl)qunoline-4-(1H)-one, which have not been previously reported from marine bacteria. From the metabolites produced by Pseudoalteromonas sp. M2, 2-(2,3-dimethylbutyl)quinolin-4-one, pseudane-VI, and pseudane-VII inhibited melanin synthesis in Melan-A cells by 23.0%, 28.2%, and 42.7%, respectively, wherein pseudane-VII showed the highest inhibition at 8 µg/mL. The results of this study suggest that liquid chromatography (LC)-MS/MS-based metabolite screening effectively improves the efficiency of novel metabolite discovery. Additionally, these compounds are promising candidates for further bioactivity development. PMID:26805856

  15. 77 FR 60677 - Proposed Information Collection; Comment Request; Antarctic Marine Living Resources Conservation...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-04

    ... National Oceanic and Atmospheric Administration Proposed Information Collection; Comment Request; Antarctic... Antarctic Marine Living Resources (Convention) established the Commission for the Conservation of Antarctic... Convention and a member of CCAMLR and its Scientific Committee. The Antarctic Marine Living...

  16. Stereochemical course of hydrolytic reaction catalyzed by alpha-galactosidase from cold adaptable marine bacterium of genus Pseudoalteromonas

    NASA Astrophysics Data System (ADS)

    Bakunina, Irina; Balabanova, Larissa; Golotin, Vasiliy; Slepchenko, Lyubov; Isakov, Vladimir; Rasskazov, Valeriy

    2014-10-01

    The recombinant α-galactosidase of the marine bacterium (α-PsGal) was synthesized with the use of the plasmid 40Gal, consisting of plasmid pET-40b (+) (Novagen) and the gene corresponding to the open reading frame of the mature α-galactosidase of marine bacterium Pseudoalteromonas sp. KMM 701, transformed into the E. coli Rosetta(DE3) cells. In order to understand the mechanism of action, the stereochemistry of hydrolysis of 4-nitrophenyl α-D-galactopyranoside (4-NPGP) by α-PsGal was measured by 1H NMR spectroscopy. The kinetics of formation of α- and β-anomer of galactose showed that α-anomer initially formed and accumulated, and then an appreciable amount of β-anomer appeared as a result of mutarotation. The data clearly show that the enzymatic hydrolysis of 4-NPGP proceeds with the retention of anomeric configuration, probably, due to a double displacement mechanism of reaction.

  17. Marine pelagic ecosystems: the west Antarctic Peninsula.

    PubMed

    Ducklow, Hugh W; Baker, Karen; Martinson, Douglas G; Quetin, Langdon B; Ross, Robin M; Smith, Raymond C; Stammerjohn, Sharon E; Vernet, Maria; Fraser, William

    2007-01-29

    The marine ecosystem of the West Antarctic Peninsula (WAP) extends from the Bellingshausen Sea to the northern tip of the peninsula and from the mostly glaciated coast across the continental shelf to the shelf break in the west. The glacially sculpted coastline along the peninsula is highly convoluted and characterized by deep embayments that are often interconnected by channels that facilitate transport of heat and nutrients into the shelf domain. The ecosystem is divided into three subregions, the continental slope, shelf and coastal regions, each with unique ocean dynamics, water mass and biological distributions. The WAP shelf lies within the Antarctic Sea Ice Zone (SIZ) and like other SIZs, the WAP system is very productive, supporting large stocks of marine mammals, birds and the Antarctic krill, Euphausia superba. Ecosystem dynamics is dominated by the seasonal and interannual variation in sea ice extent and retreat. The Antarctic Peninsula is one among the most rapidly warming regions on Earth, having experienced a 2 degrees C increase in the annual mean temperature and a 6 degrees C rise in the mean winter temperature since 1950. Delivery of heat from the Antarctic Circumpolar Current has increased significantly in the past decade, sufficient to drive to a 0.6 degrees C warming of the upper 300 m of shelf water. In the past 50 years and continuing in the twenty-first century, the warm, moist maritime climate of the northern WAP has been migrating south, displacing the once dominant cold, dry continental Antarctic climate and causing multi-level responses in the marine ecosystem. Ecosystem responses to the regional warming include increased heat transport, decreased sea ice extent and duration, local declines in icedependent Adélie penguins, increase in ice-tolerant gentoo and chinstrap penguins, alterations in phytoplankton and zooplankton community composition and changes in krill recruitment, abundance and availability to predators. The climate

  18. Marine pelagic ecosystems: the West Antarctic Peninsula

    PubMed Central

    Ducklow, Hugh W; Baker, Karen; Martinson, Douglas G; Quetin, Langdon B; Ross, Robin M; Smith, Raymond C; Stammerjohn, Sharon E; Vernet, Maria; Fraser, William

    2006-01-01

    The marine ecosystem of the West Antarctic Peninsula (WAP) extends from the Bellingshausen Sea to the northern tip of the peninsula and from the mostly glaciated coast across the continental shelf to the shelf break in the west. The glacially sculpted coastline along the peninsula is highly convoluted and characterized by deep embayments that are often interconnected by channels that facilitate transport of heat and nutrients into the shelf domain. The ecosystem is divided into three subregions, the continental slope, shelf and coastal regions, each with unique ocean dynamics, water mass and biological distributions. The WAP shelf lies within the Antarctic Sea Ice Zone (SIZ) and like other SIZs, the WAP system is very productive, supporting large stocks of marine mammals, birds and the Antarctic krill, Euphausia superba. Ecosystem dynamics is dominated by the seasonal and interannual variation in sea ice extent and retreat. The Antarctic Peninsula is one among the most rapidly warming regions on Earth, having experienced a 2°C increase in the annual mean temperature and a 6°C rise in the mean winter temperature since 1950. Delivery of heat from the Antarctic Circumpolar Current has increased significantly in the past decade, sufficient to drive to a 0.6°C warming of the upper 300 m of shelf water. In the past 50 years and continuing in the twenty-first century, the warm, moist maritime climate of the northern WAP has been migrating south, displacing the once dominant cold, dry continental Antarctic climate and causing multi-level responses in the marine ecosystem. Ecosystem responses to the regional warming include increased heat transport, decreased sea ice extent and duration, local declines in ice-dependent Adélie penguins, increase in ice-tolerant gentoo and chinstrap penguins, alterations in phytoplankton and zooplankton community composition and changes in krill recruitment, abundance and availability to predators. The climate/ecological gradients

  19. Marine bacterioplankton diversity and community composition in an antarctic coastal environment.

    PubMed

    Lo Giudice, Angelina; Caruso, Consolazione; Mangano, Santina; Bruni, Vivia; De Domenico, Maria; Michaud, Luigi

    2012-01-01

    The bacterial community inhabiting the water column at Terra Nova Bay (Ross Sea, Antarctica) was examined by the fluorescent in situ hybridization (FISH) technique and the genotypic and phenotypic characterization of 606 bacterial isolates. Overall, the FISH analysis revealed a bacterioplankton composition that was typical of Antarctic marine environments with the Cytophaga/Flavobacter (CF) group of Bacteroidetes that was equally dominant with the Actinobacteria and Gammaproteobacteria. As sampling was performed during the decay of sea-ice, it is plausible to assume the origin of Bacteroidetes from the sea-ice compartment where they probably thrive in high concentration of DOM which is efficiently remineralized to inorganic nutrients. This finding was supported by the isolation of Gelidibacter, Polaribacter, and Psychroflexus members (generally well represented in Antarctic sea-ice) which showed the ability to hydrolyze macromolecules, probably through the production of extracellular enzymes. A consistently pronounced abundance of the Gammaproteobacteria (67.8%) was also detected within the cultivable fraction. Altogether, the genera Psychromonas and Pseudoalteromonas accounted for 65.4% of total isolates and were ubiquitous, thus suggesting that they may play a key role within the analyzed bacterioplankton community. In particular, Pseudoalteromonas isolates possessed nitrate reductase and were able to hydrolyze substrates for protease, esterase, and β-galactosidase, thus indicating their involvement in the carbon and nitrogen cycling. Finally, the obtained results highlight the ability of the Actinobacteria to survive and proliferate in the Terra Nova Bay seawater as they generally showed a wide range of salt tolerance and appeared to be particularly competitive with strictly marine bacteria by better utilizing supplied carbon sources. PMID:21748267

  20. [Cloning and expression of endoglucanase of marine cold-adapted bacteria Pseudoalteromonas sp. MB-1].

    PubMed

    You, Yin-wei; Wang, Tian-hong

    2005-02-01

    The cold-adapted gram-negative rod bacterium MB-1 which could secret cellulase was screened from mud of the bottom of the Huanghai. According to the sequence of 16S rDNA, this bacterium screened was identified as one species of Pseudoalteromonas and was named as Pseudoalteromonas sp. MB-1. The gene celA encoding cold-adapted endogluanase was cloned and then jointed to pGEX-4T-1 to construct expression plasmid pGEX-celA which was expressed in E. coli BL21. Analysis to the supernatant of E. coli sonicate revealed that the concentration of GST-CelA was about 78.5 mg/L. Properties of the fusion enzyme of GST-CelA including the optimum temperature at 35 degrees C and the optimum pH about 7.2, showed that this fusion enzyme still belonged to cold-adapted enzyme and neutral enzyme. The result lays solid base for the fundamental theory and application research on cold-adapted cellulase from Pseudoalteromonas sp. MB-1.

  1. Extremophiles in an Antarctic Marine Ecosystem.

    PubMed

    Dickinson, Iain; Goodall-Copestake, William; Thorne, Michael A S; Schlitt, Thomas; Ávila-Jiménez, Maria L; Pearce, David A

    2016-01-11

    Recent attempts to explore marine microbial diversity and the global marine microbiome have indicated a large proportion of previously unknown diversity. However, sequencing alone does not tell the whole story, as it relies heavily upon information that is already contained within sequence databases. In addition, microorganisms have been shown to present small-to-large scale biogeographical patterns worldwide, potentially making regional combinations of selection pressures unique. Here, we focus on the extremophile community in the boundary region located between the Polar Front and the Southern Antarctic Circumpolar Current in the Southern Ocean, to explore the potential of metagenomic approaches as a tool for bioprospecting in the search for novel functional activity based on targeted sampling efforts. We assessed the microbial composition and diversity from a region north of the current limit for winter sea ice, north of the Southern Antarctic Circumpolar Front (SACCF) but south of the Polar Front. Although, most of the more frequently encountered sequences  were derived from common marine microorganisms, within these dominant groups, we found a proportion of genes related to secondary metabolism of potential interest in bioprospecting. Extremophiles were rare by comparison but belonged to a range of genera. Hence, they represented interesting targets from which to identify rare or novel functions. Ultimately, future shifts in environmental conditions favoring more cosmopolitan groups could have an unpredictable effect on microbial diversity and function in the Southern Ocean, perhaps excluding the rarer extremophiles.

  2. Extremophiles in an Antarctic Marine Ecosystem

    PubMed Central

    Dickinson, Iain; Goodall-Copestake, William; Thorne, Michael A.S.; Schlitt, Thomas; Ávila-Jiménez, Maria L.; Pearce, David A.

    2016-01-01

    Recent attempts to explore marine microbial diversity and the global marine microbiome have indicated a large proportion of previously unknown diversity. However, sequencing alone does not tell the whole story, as it relies heavily upon information that is already contained within sequence databases. In addition, microorganisms have been shown to present small-to-large scale biogeographical patterns worldwide, potentially making regional combinations of selection pressures unique. Here, we focus on the extremophile community in the boundary region located between the Polar Front and the Southern Antarctic Circumpolar Current in the Southern Ocean, to explore the potential of metagenomic approaches as a tool for bioprospecting in the search for novel functional activity based on targeted sampling efforts. We assessed the microbial composition and diversity from a region north of the current limit for winter sea ice, north of the Southern Antarctic Circumpolar Front (SACCF) but south of the Polar Front. Although, most of the more frequently encountered sequences  were derived from common marine microorganisms, within these dominant groups, we found a proportion of genes related to secondary metabolism of potential interest in bioprospecting. Extremophiles were rare by comparison but belonged to a range of genera. Hence, they represented interesting targets from which to identify rare or novel functions. Ultimately, future shifts in environmental conditions favoring more cosmopolitan groups could have an unpredictable effect on microbial diversity and function in the Southern Ocean, perhaps excluding the rarer extremophiles.

  3. Extremophiles in an Antarctic Marine Ecosystem

    PubMed Central

    Dickinson, Iain; Goodall-Copestake, William; Thorne, Michael A.S.; Schlitt, Thomas; Ávila-Jiménez, Maria L.; Pearce, David A.

    2016-01-01

    Recent attempts to explore marine microbial diversity and the global marine microbiome have indicated a large proportion of previously unknown diversity. However, sequencing alone does not tell the whole story, as it relies heavily upon information that is already contained within sequence databases. In addition, microorganisms have been shown to present small-to-large scale biogeographical patterns worldwide, potentially making regional combinations of selection pressures unique. Here, we focus on the extremophile community in the boundary region located between the Polar Front and the Southern Antarctic Circumpolar Current in the Southern Ocean, to explore the potential of metagenomic approaches as a tool for bioprospecting in the search for novel functional activity based on targeted sampling efforts. We assessed the microbial composition and diversity from a region north of the current limit for winter sea ice, north of the Southern Antarctic Circumpolar Front (SACCF) but south of the Polar Front. Although, most of the more frequently encountered sequences  were derived from common marine microorganisms, within these dominant groups, we found a proportion of genes related to secondary metabolism of potential interest in bioprospecting. Extremophiles were rare by comparison but belonged to a range of genera. Hence, they represented interesting targets from which to identify rare or novel functions. Ultimately, future shifts in environmental conditions favoring more cosmopolitan groups could have an unpredictable effect on microbial diversity and function in the Southern Ocean, perhaps excluding the rarer extremophiles. PMID:27681902

  4. Extremophiles in an Antarctic Marine Ecosystem.

    PubMed

    Dickinson, Iain; Goodall-Copestake, William; Thorne, Michael A S; Schlitt, Thomas; Ávila-Jiménez, Maria L; Pearce, David A

    2016-01-01

    Recent attempts to explore marine microbial diversity and the global marine microbiome have indicated a large proportion of previously unknown diversity. However, sequencing alone does not tell the whole story, as it relies heavily upon information that is already contained within sequence databases. In addition, microorganisms have been shown to present small-to-large scale biogeographical patterns worldwide, potentially making regional combinations of selection pressures unique. Here, we focus on the extremophile community in the boundary region located between the Polar Front and the Southern Antarctic Circumpolar Current in the Southern Ocean, to explore the potential of metagenomic approaches as a tool for bioprospecting in the search for novel functional activity based on targeted sampling efforts. We assessed the microbial composition and diversity from a region north of the current limit for winter sea ice, north of the Southern Antarctic Circumpolar Front (SACCF) but south of the Polar Front. Although, most of the more frequently encountered sequences  were derived from common marine microorganisms, within these dominant groups, we found a proportion of genes related to secondary metabolism of potential interest in bioprospecting. Extremophiles were rare by comparison but belonged to a range of genera. Hence, they represented interesting targets from which to identify rare or novel functions. Ultimately, future shifts in environmental conditions favoring more cosmopolitan groups could have an unpredictable effect on microbial diversity and function in the Southern Ocean, perhaps excluding the rarer extremophiles. PMID:27681902

  5. Antibiofilm Activity of the Marine Bacterium Pseudoalteromonas sp. 3J6 Against Vibrio tapetis, the Causative Agent of Brown Ring Disease.

    PubMed

    Rodrigues, Sophie; Paillard, Christine; Dufour, Alain; Bazire, Alexis

    2015-03-01

    Vibrio tapetis CECT4600 is a pathogenic Gram-negative bacterium causing the brown ring disease in the Manila clam Ruditapes philippinarum. This vibriosis is induced by bacterial attachment on the periostracal lamina, yielding a decalcification of the bivalve shell. As in many bacterial species, pathogenesis is likely related to biofilm formation. The proteinaceous exoproducts of the marine bacterium Pseudoalteromonas sp. 3J6 inhibit the formation of biofilm by most of the tested marine bacteria without affecting their planktonic growth. In the present work, we examined the sensitivity of V. tapetis to Pseudoalteromonas sp. 3J6 and its exoproducts. In V. tapetis CECT4600-GFP-Pseudoalteromonas sp. 3J6 co-cultures, the latter outcompeted V. tapetis whatever the growth mode (planktonic or biofilm), which could result from a slower growth of V. tapetis. Biofilms containing only V. tapetis were grown in vitro on a glass substratum under dynamic conditions. When the glass was coated with a culture supernatant of Pseudoalteromonas sp. 3J6 (SN(3J6)) prior to inoculating V. tapetis CECT4600-GFP, the bacterial attachment was about fivefold lower than in control experiment without SN3J6 and the biofilm formation was delayed by about 24 h: A full biofilm was obtained at 48 versus 24 h for the control. Moreover, a preformed V. tapetis biofilm (grown on SN(3J6)-free glass substratum) could be disrupted by incubating it with SN3J6. This data suggest that Pseudoalteromonas sp. 3J6 is a good candidate to set up an anti-V. tapetis strategy usable in aquaculture to grow V. tapetis-free Manila clam spats.

  6. Antarctic marine biodiversity and deep-sea hydrothermal vents.

    PubMed

    Chown, Steven L

    2012-01-01

    The diversity of many marine benthic groups is unlike that of most other taxa. Rather than declining from the tropics to the poles, much of the benthos shows high diversity in the Southern Ocean. Moreover, many species are unique to the Antarctic region. Recent work has shown that this is also true of the communities of Antarctic deep-sea hydrothermal vents. Vent ecosystems have been documented from many sites across the globe, associated with the thermally and chemically variable habitats found around these, typically high temperature, streams that are rich in reduced compounds and polymetallic sulphides. The animal communities of the East Scotia Ridge vent ecosystems are very different to those elsewhere, though the microbiota, which form the basis of vent food webs, show less differentiation. Much of the biological significance of deep-sea hydrothermal vents lies in their biodiversity, the diverse biochemistry of their bacteria, the remarkable symbioses among many of the marine animals and these bacteria, and the prospects that investigations of these systems hold for understanding the conditions that may have led to the first appearance of life. The discovery of diverse and unusual Antarctic hydrothermal vent ecosystems provides opportunities for new understanding in these fields. Moreover, the Antarctic vents south of 60°S benefit from automatic conservation under the Convention on the Conservation of Antarctic Marine Living Resources and the Antarctic Treaty. Other deep-sea hydrothermal vents located in international waters are not protected and may be threatened by growing interests in deep-sea mining.

  7. Levoglucosan and phenols in Antarctic marine, coastal and plateau aerosols.

    PubMed

    Zangrando, Roberta; Barbaro, Elena; Vecchiato, Marco; Kehrwald, Natalie M; Barbante, Carlo; Gambaro, Andrea

    2016-02-15

    Due to its isolated location, Antarctica is a natural laboratory for studying atmospheric aerosols and pollution in remote areas. Here, we determined levoglucosan and phenolic compounds (PCs) at diverse Antarctic sites: on the plateau, a coastal station and during an oceanographic cruise. Levoglucosan and PCs reached the Antarctic plateau where they were observed in accumulation mode aerosols (with median levoglucosan concentrations of 6.4 pg m(-3) and 4.1 pg m(-3), and median PC concentrations of 15.0 pg m(-3) and 7.3 pg m(-3)). Aged aerosols arrived at the coastal site through katabatic circulation with the majority of the levoglucosan mass distributed on larger particulates (24.8 pg m(-3)), while PCs were present in fine particles (34.0 pg m(-3)). The low levoglucosan/PC ratios in Antarctic aerosols suggest that biomass burning aerosols only had regional, rather than local, sources. General acid/aldehyde ratios were lower at the coastal site than on the plateau. Levoglucosan and PCs determined during the oceanographic cruise were 37.6 pg m(-3) and 58.5 pg m(-3) respectively. Unlike levoglucosan, which can only be produced by biomass burning, PCs have both biomass burning and other sources. Our comparisons of these two types of compounds across a range of Antarctic marine, coastal, and plateau sites demonstrate that local marine sources dominate Antarctic PC concentrations. PMID:26674690

  8. Levoglucosan and phenols in Antarctic marine, coastal and plateau aerosols.

    PubMed

    Zangrando, Roberta; Barbaro, Elena; Vecchiato, Marco; Kehrwald, Natalie M; Barbante, Carlo; Gambaro, Andrea

    2016-02-15

    Due to its isolated location, Antarctica is a natural laboratory for studying atmospheric aerosols and pollution in remote areas. Here, we determined levoglucosan and phenolic compounds (PCs) at diverse Antarctic sites: on the plateau, a coastal station and during an oceanographic cruise. Levoglucosan and PCs reached the Antarctic plateau where they were observed in accumulation mode aerosols (with median levoglucosan concentrations of 6.4 pg m(-3) and 4.1 pg m(-3), and median PC concentrations of 15.0 pg m(-3) and 7.3 pg m(-3)). Aged aerosols arrived at the coastal site through katabatic circulation with the majority of the levoglucosan mass distributed on larger particulates (24.8 pg m(-3)), while PCs were present in fine particles (34.0 pg m(-3)). The low levoglucosan/PC ratios in Antarctic aerosols suggest that biomass burning aerosols only had regional, rather than local, sources. General acid/aldehyde ratios were lower at the coastal site than on the plateau. Levoglucosan and PCs determined during the oceanographic cruise were 37.6 pg m(-3) and 58.5 pg m(-3) respectively. Unlike levoglucosan, which can only be produced by biomass burning, PCs have both biomass burning and other sources. Our comparisons of these two types of compounds across a range of Antarctic marine, coastal, and plateau sites demonstrate that local marine sources dominate Antarctic PC concentrations.

  9. Antarctic Marine Biodiversity and Deep-Sea Hydrothermal Vents

    PubMed Central

    Chown, Steven L.

    2012-01-01

    The diversity of many marine benthic groups is unlike that of most other taxa. Rather than declining from the tropics to the poles, much of the benthos shows high diversity in the Southern Ocean. Moreover, many species are unique to the Antarctic region. Recent work has shown that this is also true of the communities of Antarctic deep-sea hydrothermal vents. Vent ecosystems have been documented from many sites across the globe, associated with the thermally and chemically variable habitats found around these, typically high temperature, streams that are rich in reduced compounds and polymetallic sulphides. The animal communities of the East Scotia Ridge vent ecosystems are very different to those elsewhere, though the microbiota, which form the basis of vent food webs, show less differentiation. Much of the biological significance of deep-sea hydrothermal vents lies in their biodiversity, the diverse biochemistry of their bacteria, the remarkable symbioses among many of the marine animals and these bacteria, and the prospects that investigations of these systems hold for understanding the conditions that may have led to the first appearance of life. The discovery of diverse and unusual Antarctic hydrothermal vent ecosystems provides opportunities for new understanding in these fields. Moreover, the Antarctic vents south of 60°S benefit from automatic conservation under the Convention on the Conservation of Antarctic Marine Living Resources and the Antarctic Treaty. Other deep-sea hydrothermal vents located in international waters are not protected and may be threatened by growing interests in deep-sea mining. PMID:22235192

  10. Cultivable psychrotolerant yeasts associated with Antarctic marine sponges.

    PubMed

    Vaca, Inmaculada; Faúndez, Carolina; Maza, Felipe; Paillavil, Braulio; Hernández, Valentina; Acosta, Fermín; Levicán, Gloria; Martínez, Claudio; Chávez, Renato

    2013-01-01

    Unlike filamentous fungi and bacteria, very little is known about cultivable yeasts associated with marine sponges, especially those from Antarctic seas. During an expedition to King George Island, in the Antarctica, samples of 11 marine sponges were collected by scuba-diving. From these sponges, 20 psychrotolerant yeast isolates were obtained. Phylogenetic analyses of D1/D2 and ITS rRNA gene sequences revealed that the marine ascomycetous yeast Metschnikowia australis is the predominant organism associated with these invertebrates. Other species found belonged to the Basidiomycota phylum: Cystofilobasidium infirmominiatum, Rhodotorula pinicola, Leucosporidiella creatinivora and a new yeast from the Leucosporidiella genus. None of these yeasts have been previously associated with marine sponges. A screening to estimate the ability of these yeasts as producers of extracellular enzymatic activities at several pH and temperature conditions was performed. Several yeast isolates demonstrated amylolytic, proteolytic, lipolytic or cellulolytic activity, but none of them showed xylanolytic activity under the conditions assayed. To our knowledge, this work is the first description of cultivable yeasts associated with marine sponges from the Antarctic sea.

  11. Cloning and characterization of a new κ-carrageenase gene from marine bacterium Pseudoalteromonas sp. QY203

    NASA Astrophysics Data System (ADS)

    Xu, Xiaoyan; Li, Shangyong; Yang, Xuemei; Yu, Wengong; Han, Feng

    2015-12-01

    κ-carrageenan oligosaccharides exhibit various biological activities. Enzymatic degradation by κ-carrageenase is safe and controllable. Therefore, κ-carrageenases have captured more and more attentions. In this study, a κ-carrageenase encoding gene, cgkX, was cloned from Pseudoalteromonas sp. QY203 with degenerate and inverse PCR. It comprised an ORF of 1194 bp in length, encoding a protein with 397 amino acid residues. CgkX is a new member of glycoside hydrolase family 16. The deduced amino acid sequence shared a high similarity with CgkX of Pseudoalteromonas κ-carrageenase; however, the recombinant CgkX showed different biochemical characteristics. The recombinant enzyme was most active at pH 7.0 and 55°C in the presence of 300 mmol L-1 NaCl. It was stable in a broad range of acidity ranging from pH 3.0 to pH 10.0 when temperature was below 40°C. More than 80% of its activity was maintained after being incubated at pH 3.6-10.0 and 4°C for 24 h. CgkX retained more than 90% of activity after being incubated at 40°C for 1 h. EDTA and SDS (1 mmol L-1) did not inhibit its activity. CgkX hydrolyzed κ-carrageenan into disaccharide and tetrasaccharide as an endo-cleaver. All these characteristics demonstrated that CgkX is applicable to both κ-carrageenan oligosaccharide production and κ-carrageenase structure-function research.

  12. 75 FR 18110 - Antarctic Marine Living Resources; Use of Centralized-Vessel Monitoring System and Importation of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-09

    ... National Oceanic and Atmospheric Administration 50 CFR Part 300 RIN 0648-AX80 Antarctic Marine Living... facilitate conservation and management of Antarctic Marine Living Resources (AMLR). The regulations: further... Antarctic Marine Living Resources (CCAMLR), and to simplify the process for informing the public of...

  13. A cold-adapted esterase of a novel marine isolate, Pseudoalteromonas arctica: gene cloning, enzyme purification and characterization.

    PubMed

    Al Khudary, Rami; Venkatachalam, Ramprasath; Katzer, Moritz; Elleuche, Skander; Antranikian, Garabed

    2010-05-01

    A gene encoding an esterase (estO) was identified and sequenced from a gene library screen of the psychrotolerant bacterium Pseudoalteromonas arctica. Analysis of the 1,203 bp coding region revealed that the deduced peptide sequence is composed of 400 amino acids with a predicted molecular mass of 44.1 kDa. EstO contains a N-terminal esterase domain and an additional OsmC domain at the C-terminus (osmotically induced family of proteins). The highly conserved five-residue motif typical for all alpha/beta hydrolases (G x S x G) was detected from position 104 to 108 together with a putative catalytic triad consisting of Ser(106), Asp(196), and His(225). Sequence comparison showed that EstO exhibits 90% amino acid identity with hypothetical proteins containing similar esterase and OsmC domains but only around 10% identity to the amino acid sequences of known esterases. EstO variants with and without the OsmC domain were produced and purified as His-tag fusion proteins in E. coli. EstO displayed an optimum pH of 7.5 and optimum temperature of 25 degrees C with more than 50% retained activity at the freezing point of water. The thermostability of EstO (50% activity after 5 h at 40 degrees C) dramatically increased in the truncated variant (50% activity after 2.5 h at 90 degrees C). Furthermore, the esterase displays broad substrate specificity for esters of short-chain fatty acids (C(2)-C(8)).

  14. Pseudoalteromonas bacteria are capable of degrading paralytic shellfish toxins.

    PubMed

    Donovan, Carrie J; Garduño, Rafael A; Kalmokoff, Martin; Ku, John C; Quilliam, Michael A; Gill, Tom A

    2009-11-01

    Marine bacterial isolates cultured from the digestive tracts of blue mussels (Mytilus edulis) contaminated with paralytic shellfish toxins (PSTs) were screened for the ability to reduce the toxicity of a PST mixture. Seven isolates reduced the overall toxicity of the algal extract by > or = 90% within 3 days. These isolates shared at least 99% 16S rRNA gene sequence similarity with five Pseudoalteromonas spp. Phenotypic tests suggested that all are novel strains of Pseudoalteromonas haloplanktis. PMID:19717625

  15. Iodine Monoxide in the Antarctic Marine Boundary Layer: Recent Discoveries

    NASA Astrophysics Data System (ADS)

    Friess, Udo; Zielcke, Johannes; Pöhler, Denis; Nasse, Jan-Marcus; Platt, Ulrich

    2015-04-01

    Iodine monoxide (IO) is thought to play an important role in the chemistry of the Antarctic marine boundary layer (MBL). Produced either by organic precursors or by inorganic processes, large areas of enhanced IO were detected by satellite not only around the coast of Antarctica, but also over the continent far from the coastal source regions. In the past, several active and passive remote sensing measurements at coastal stations confirmed the presence of IO, which is expected to have a significant impact on the oxidative capacity and the ozone budget in the MBL. We present a summary of recent findings regarding IO in the Antarctic MBL, with a focus on two measurement campaigns conducted at the German Research Station Neumayer (70°S, 8°W), the New Zealand Station Scott Base (177°E, 78°S) and in the marginal sea ice zone of the Wedell Sea onboard the German research vessel Polarstern in austral summer 2011, spring 2012, and winter/spring 2013, respectively. During all three campaigns, IO was measured using a combination of active and passive DOAS remote sensing instruments, including a newly developed mobile open-path cavity-enhanced DOAS instrument. Satellite measurements indicate that the area around Scott Base in the Ross Sea, but also the marginal sea ice zone, are subject to particularly high levels of IO. However, in contrast to previous ground-based and satellite borne observations, we find surprisingly low IO concentrations at Neumayer, Scott Base and in the marginal sea ice zone, with IO being below the detection limit (< 0.5 ppt) of the active DOAS instruments at all times. This raises the question to what extent IO is of importance for the chemistry of the Antarctic MBL.

  16. Discovery and Characterization of a Distinctive Exo-1,3/1,4-β-Glucanase from the Marine Bacterium Pseudoalteromonas sp. Strain BB1▿ †

    PubMed Central

    Nakatani, Yoshio; Lamont, Iain L.; Cutfield, John F.

    2010-01-01

    Marine bacteria residing on local red, green, and brown seaweeds were screened for exo-1,3-β-glucanase (ExoP) activity. Of the 90 bacterial species isolated from 32 seaweeds, only one, a Pseudoalteromonas sp., was found to display such activity. It was isolated from a Durvillaea sp., a brown kelp known to contain significant amounts of the storage polysaccharide laminarin (1,3-β-d-glucan with some 1,6-β branching). Four chromatographic steps were utilized to purify the enzyme (ExoP). Chymotryptic digestion provided peptide sequences for primer design and subsequent gene cloning. The exoP gene coded for 840 amino acids and was located just 50 bp downstream from a putative lichenase (endo-1,3-1,4-β-glucanase) gene, suggesting possible cotranscription of these genes. Sequence comparisons revealed ExoP to be clustered within a group of bacterial glycosidases with high similarity to a group of glycoside hydrolase (GH3) plant enzymes, of which the barley exo-1,3/1,4-β-glucanase (ExoI) is the best characterized. The major difference between the bacterial and plant proteins is an extra 200- to 220-amino-acid extension at the C terminus of the former. This additional sequence does not correlate with any known functional domain, but ExoP was not active against laminarin when this region was removed. Production of recombinant ExoP allowed substrate specificity studies to be performed. The enzyme was found to possess similar levels of exoglucanase activity against both 1,4-β linkages and 1,3-β linkages, and so ExoP is designated an exo-1,3/1,4-β-exoglucanase, the first such bacterial enzyme to be characterized. This broader specificity could allow the enzyme to assist in digesting both cell wall cellulose and cytoplasmic laminarin. PMID:20729316

  17. Anti-methicillin-resistant Staphylococcus aureus (MRSA) activity of MC21-B, an antibacterial compound produced by the marine bacterium Pseudoalteromonas phenolica O-BC30T.

    PubMed

    Isnansetyo, Alim; Kamei, Yuto

    2009-08-01

    The aim of this study was to purify, characterise and evaluate the in vitro activity of MC21-B, an antibiotic produced by the marine bacterium Pseudoalteromonas phenolica O-BC30(T). MC21-B was purified by sequential silica and Cosmosil chromatography followed by high-performance liquid chromatography (HPLC). The chemical structure of MC21-B was determined by ultraviolet, infrared, electron impact mass and nuclear magnetic resonance spectrometric analyses. To evaluate its antibacterial activity, minimum inhibitory concentrations (MICs) against 10 clinical isolates of methicillin-resistant Staphylococcus aureus (MRSA) as well as kill times were determined. Antifungal activity was determined by the paper disk diffusion method. Cytotoxicity against human cells was determined with MTT [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide]. Based on spectrophotometric analyses, MC21-B was predicted to be a novel substance, 2,2',3-tribromobiphenyl-4,4'-dicarboxylic acid. MC21-B exhibited anti-MRSA activity against all 10 clinical isolates of MRSA, with MICs between 1 microg/mL and 4 microg/mL. MC21-B was highly active against Bacillus subtilis and Enterococcus serolicida but was inactive against Gram-negative bacteria and fungi. Furthermore, MC21-B exhibited cytotoxic activity against human normal dermal fibroblasts and human leukaemic (MOLT) cells at 3-12-fold higher concentrations than required for its antibacterial activity. These results demonstrated that MC21-B has high in vitro activity against MRSA and might be useful as a lead compound in developing new anti-MRSA substances.

  18. Antibacterial activity of Pseudoalteromonas in the coral holobiont.

    PubMed

    Shnit-Orland, Maya; Sivan, Alex; Kushmaro, Ariel

    2012-11-01

    Corals harbor diverse and abundant prokaryotic populations. Bacterial communities residing in the coral mucus layer may be either pathogenic or symbiotic. Some species may produce antibiotics as a method of controlling populations of competing microbial species. The present study characterizes cultivable Pseudoalteromonas sp. isolated from the mucus layer of different coral species from the northern Gulf of Eilat, Red Sea, Israel. Six mucus-associated Pseudoalteromonas spp. obtained from different coral species were screened for antibacterial activity against 23 tester strains. Five of the six Pseudoalteromonas strains demonstrated extracellular antibacterial activity against Gram-positive-but not Gram-negative-tester strains. Active substances secreted into the cell-free supernatant are heat-tolerant and inhibit growth of Bacillus cereus, Staphylococcus aureus, and of ten endogenous Gram-positive marine bacteria isolated from corals. The Pseudoalteromonas spp. isolated from Red sea corals aligned in a phylogenetic tree with previously isolated Pseudoalteromonas spp. of marine origin that demonstrated antimicrobial activity. These results suggest that coral mucus-associated Pseudoalteromonas may play a protective role in the coral holobiont's defense against potential Gram-positive coral pathogens. PMID:22767125

  19. Tropospheric Bro In The Antarctic Marine Boundary Layer

    NASA Astrophysics Data System (ADS)

    Friess, U.; Wagner, T.; Platt, U.

    Sudden enhancements of bromine monoxide (BrO) in the polar marine boundary layer during spring are known to be caused by the autocatalytic release of BrO from sea ice surfaces. BrO subsequently leads to the destruction of boundary layer ozone (the 'tropospheric ozone hole'). Here we present observations of BrO at the German Antarctic research station Neu- mayer using DOAS measurements of zenith-scattered sunlight. During austral spring 1999 and 2000, numerous strong and sudden enhancements in the BrO slant column density were observed, indicating the occurrence of BrO in the troposphere. This find- ing is supported by satellite borne GOME measurements, showing huge clouds of enhanced BrO over the sea ice around the Antarctic continent (covering 106 km2). The observation of tropospheric BrO is often accompanied by a sudden drop in surface ozone mixing ratios. However, BrO enhancements are also observed in the absence of surface ozone deple- tion, indicating that the detected BrO is located above the ground. To gain information on altitude distribution and source regions of the BrO enriched air masses, we combine our DOAS measurements with back trajectory calculations in high spatial and tempo- ral resolution in combination with sea ice maps and with observations of the oxygen dimer (O4). Our analysis shows that (1) BrO enhancements always coincide with the observation of air masses which were previously exposed to sea ice, (2) surface ozone depletion is found to occur whenever the air at ground comes from sea ice surfaces, and (3) the presence of strong light path enhancements during BrO events are prob- ably caused by the transport of sea salt aerosols from the ocean to the measurement site, on which heterogeneous release of BrO may take place in situ. These findings strongly suggest that the phenomenon of ozone depletion due to BrO is not restricted to the marine boundary layer, but also occurs in the free troposphere: the local mete- orology frequently leads to

  20. The Antarctic region as a marine biodiversity hotspot for echinoderms: Diversity and diversification of sea cucumbers

    NASA Astrophysics Data System (ADS)

    Mark O'Loughlin, P.; Paulay, Gustav; Davey, Niki; Michonneau, François

    2011-03-01

    The Antarctic region is renowned for its isolated, unusual, diverse, and disharmonic marine fauna. Holothuroids are especially diverse, with 187 species (including 51 that are undescribed) recorded south of the Antarctic Convergence. This represents ˜4% of the documented Antarctic marine biota, and ˜10% of the world's holothuroid diversity. We present evidence that both inter-regional speciation with southern cold-temperate regions and intra-regional diversification has contributed to species richness. The Antarctic fauna is isolated, with few shallow-water Antarctic species known from north of the Convergence, yet several species show recent transgression of this boundary followed by genetic divergence. Interchange at longer time scales is evidenced by the scarcity of endemic genera (10 of 55) and occurrence of all six holothuroid orders within the region. While most Antarctic holothuroid morphospecies have circum-polar distributions, mtDNA sequence data demonstrate substantial geographic differentiation in many of these. Thus, most of the 37 holothuroid species recorded from shelf/slope depths in the Weddell Sea have also been found in collections from Prydz Bay and the Ross Sea. Yet 17 of 28 morphospecies and complexes studied show allopatric differentiation around the continent, on average into three divergent lineages each, suggesting that morphological data fails to reflect the level of differentiation. Interchange and local radiation of colonizers appear to have rapidly built diversity in the Antarctic, despite the potential of cold temperatures (and associated long generation times) to slow the rate of evolution.

  1. A robust bioassay to assess the toxicity of metals to the Antarctic marine microalga Phaeocystis antarctica.

    PubMed

    Gissi, Francesca; Adams, Merrin S; King, Catherine K; Jolley, Dianne F

    2015-07-01

    Despite evidence of contamination in Antarctic coastal marine environments, no water-quality guidelines have been established for the region because of a paucity of biological effects data for local Antarctic species. Currently, there is limited information on the sensitivity of Antarctic microalgae to metal contamination, which is exacerbated by the lack of standard toxicity testing protocols for local marine species. In the present study, a routine and robust toxicity test protocol was developed using the Antarctic marine microalga Phaeocystis antarctica, and its sensitivity was investigated following 10-d exposures to dissolved copper, cadmium, lead, zinc, and nickel. In comparisons of 10% inhibition of population growth rate (IC10) values, P. antarctica was most sensitive to copper (3.3 μg/L), followed by cadmium (135 μg/L), lead (260 μg/L), and zinc (450 μg/L). Although an IC10 value for nickel could not be accurately estimated, the no-observed-effect concentration value for nickel was 1070 μg/L. Exposure to copper and cadmium caused changes in internal cell granularity and increased chlorophyll a fluorescence. Lead, zinc, and nickel had no effect on any of the cellular parameters measured. The present study provides valuable metal-ecotoxicity data for an Antarctic marine microalga, with P. antarctica representing one of the most sensitive microalgal species to dissolved copper ever reported when compared with temperate and tropical species.

  2. Influence of large-scale atmospheric circulation on marine air intrusion toward the East Antarctic coast

    NASA Astrophysics Data System (ADS)

    Kurita, Naoyuki; Hirasawa, Naohiko; Koga, Seizi; Matsushita, Junji; Steen-Larsen, Hans Christian; Masson-Delmotte, Valérie; Fujiyoshi, Yasushi

    2016-09-01

    Marine air intrusions into Antarctica play a key role in high-precipitation events. Here we use shipboard observations of water vapor isotopologues between Australia and Syowa on the East Antarctic coast to elucidate the mechanism by which large-scale circulation influences marine air intrusions. The temporal isotopic variations at Syowa reflect the meridional movement of a marine air front. They are also associated with atmospheric circulation anomalies that enhance the southward movement of cyclones over the Southern Ocean. The relationship between large-scale circulation and the movement of the front is explained by northerly winds which, in association with cyclones, move toward the Antarctic coast and push marine air with isotopically enriched moisture into the inland covered by glacial air with depleted isotopic values. Future changes in large-scale circulation may have a significant impact on the frequency and intensity of marine air intrusion into Antarctica.

  3. Molecular adaptations in Antarctic fish and bacteria

    NASA Astrophysics Data System (ADS)

    Russo, Roberta; Riccio, Alessia; di Prisco, Guido; Verde, Cinzia; Giordano, Daniela

    2010-08-01

    Marine organisms, living in the cold waters of the Southern Ocean, are exposed to high oxygen concentrations. Cold-adapted organisms have developed networks of defence mechanisms to protect themselves against oxidative stress. The dominant suborder Notothenioidei of the Southern Ocean is one of the most interesting models, within vertebrates, to study the evolutionary biological responses to extreme environment. Within bacteria, the psychrophilic Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 gives the opportunity to explore the cellular strategies adopted in vivo by cold-adapted microorganisms to cope with cold and high oxygen concentration. Understanding the molecular mechanisms underlying how a range of Antarctic organisms have responded to climate change in the past will enable predictions as to how they and other species will adapt to global climate change, in terms of physiological function, distribution patterns and ecosystem balance.

  4. Complete Genome Sequence of Pseudoalteromonas sp. Strain OCN003, Isolated from Kāne'ohe Bay, O'ahu, Hawaii.

    PubMed

    Beurmann, Silvia; Videau, Patrick; Ushijima, Blake; Smith, Ashley M; Aeby, Greta S; Callahan, Sean M; Belcaid, Mahdi

    2015-01-01

    Pseudoalteromonas sp. strain OCN003 is a marine gammaproteobacterium that was isolated from a diseased colony of the common Hawaiian reef coral, Montipora capitata, found on a reef surrounding Moku o Lo'e in Kāne'ohe Bay, Hawaii. Here, we report the complete genome of Pseudoalteromonas sp. strain OCN003. PMID:25593253

  5. Overview of the chemical ecology of benthic marine invertebrates along the western Antarctic peninsula.

    PubMed

    McClintock, James B; Amsler, Charles D; Baker, Bill J

    2010-12-01

    Thirteen years ago in a review that appeared in the American Zoologist, we presented the first survey of the chemical and ecological bioactivity of Antarctic shallow-water marine invertebrates. In essence, we reported that despite theoretical predictions to the contrary the incidence of chemical defenses among sessile and sluggish Antarctic marine invertebrates was widespread. Since that time we and others have significantly expanded upon the base of knowledge of Antarctic marine invertebrates' chemical ecology, both from the perspective of examining marine invertebrates in new, distinct geographic provinces, as well as broadening the evaluation of the ecological significance of secondary metabolites. Importantly, many of these studies have been framed within established theoretical constructs, particularly the Optimal Defense Theory. In the present article, we review the current knowledge of chemical ecology of benthic marine invertebrates comprising communities along the Western Antarctic Peninsula (WAP), a region of Antarctica that is both physically and biologically distinct from the rest of the continent. Our overview indicates that, similar to other regions of Antarctica, anti-predator chemical defenses are widespread among species occurring along the WAP. In some groups, such as the sponges, the incidence of chemical defenses against predation is comparable to, or even slightly higher than, that found in tropical marine systems. While there is substantial knowledge of the chemical defenses of benthic marine invertebrates against predators, much less is known about chemical anti-foulants. The sole survey conducted to date suggests that secondary metabolites in benthic sponges are likely to be important in the prevention of fouling by benthic diatoms, yet generally lack activity against marine bacteria. Our understanding of the sensory ecology of Antarctic benthic marine invertebrates, despite its great potential, remains in its infancy. For example, along the

  6. Quantifying Antarctic marine biodiversity: The SCAR-MarBIN data portal

    NASA Astrophysics Data System (ADS)

    Griffiths, Huw J.; Danis, Bruno; Clarke, Andrew

    2011-03-01

    The documentation and analysis of broad-scale biological diversity requires modern databases. Here we describe the SCAR-Marine Biodiversity Information Network (SCAR-MarBIN) and demonstrate its value with a preliminary analysis of geographic patterns in species richness for a variety of marine taxa. SCAR-MarBIN is a web portal ( www.scarmarbin.be) that compiles and manages existing and new information on Antarctic marine biodiversity; it currently links over 140 datasets comprising over one million records. The portal is home to the Registry of Antarctic Marine Species (RAMS), an authoritative taxonomic list of marine species occurring in Antarctica. RAMS is a key resource for the Census of Antarctic Marine Life (CAML), a major five-year project that aims at assessing the nature, distribution and abundance of Southern Ocean biological diversity. SCAR-MarBIN provides a means of quantifying not only the diversity and distribution of Antarctic marine life but also a record of how, when and where these have been studied. It allows for the examination of geographic and bathymetric ranges, the documentation of gaps within and limits to the data, together with the identification of areas of particularly high diversity (hotspots) and also under-sampled regions or taxa. A preliminary analysis indicates that the pattern of sampling hotspots is driven principally by the pelagic data, mainly bird and mammal observations, whereas benthic species drive the overall pattern in species richness. Analyses of the complete data set reveal important biases in the data: most samples have been taken in shallow water (<700 m) and are either concentrated around shore-based research stations, or in the open ocean close to regular ship transit routes. These data provide a useful benchmark for the future, enabling ventures such as CAML to assess their impact on knowledge of biological diversity. It also highlights key areas for further investigation, such as the deep sea and the Amundsen Sea.

  7. Ecological and Pharmacological Activities of Antarctic Marine Natural Products.

    PubMed

    Avila, Conxita

    2016-06-01

    Antarctic benthic communities are regulated by abundant interactions of different types among organisms, such as predation, competition, etc. Predators are usually sea stars, with omnivorous habits, as well as other invertebrates. Against this strong predation pressure, many organisms have developed all sorts of defensive strategies, including chemical defenses. Natural products are thus quite common in Antarctic organisms with an important ecological and pharmacological potential. In this paper, the chemical defenses of the Antarctic organisms studied during the ECOQUIM and ACTIQUIM projects, as well as their pharmacological potential, are reviewed. For the ecological defenses, predation against the sea star Odontaster validus is analyzed and evaluated along depth gradients as well as considering the lifestyle of the organisms. For the pharmacological activity, the anticancer, anti-inflammatory, and antibacterial activities tested are evaluated here. Very often, only crude extracts or fractions have been tested so far, and therefore, the natural products responsible for such activities remain yet to be identified. Even if the sampling efforts are not uniform along depth, most ecologically active organisms are found between 200 and 500 m depth. Also, from the samples studied, about four times more sessile organisms possess chemical defenses against the sea star than the vagile ones; these represent 50 % of sessile organisms and 35 % of the vagile ones, out of the total tested, being active. Pharmacological activity has not been tested uniformly in all groups, but the results show that relevant activity is found in different phyla, especially in Porifera, Cnidaria, Bryozoa, and Tunicata, but also in others. No relationship between depth and pharmacological activity can be established with the samples tested so far. More studies are needed in order to better understand the ecological relationships among Antarctic invertebrates mediated by natural products and

  8. Ecological and Pharmacological Activities of Antarctic Marine Natural Products.

    PubMed

    Avila, Conxita

    2016-06-01

    Antarctic benthic communities are regulated by abundant interactions of different types among organisms, such as predation, competition, etc. Predators are usually sea stars, with omnivorous habits, as well as other invertebrates. Against this strong predation pressure, many organisms have developed all sorts of defensive strategies, including chemical defenses. Natural products are thus quite common in Antarctic organisms with an important ecological and pharmacological potential. In this paper, the chemical defenses of the Antarctic organisms studied during the ECOQUIM and ACTIQUIM projects, as well as their pharmacological potential, are reviewed. For the ecological defenses, predation against the sea star Odontaster validus is analyzed and evaluated along depth gradients as well as considering the lifestyle of the organisms. For the pharmacological activity, the anticancer, anti-inflammatory, and antibacterial activities tested are evaluated here. Very often, only crude extracts or fractions have been tested so far, and therefore, the natural products responsible for such activities remain yet to be identified. Even if the sampling efforts are not uniform along depth, most ecologically active organisms are found between 200 and 500 m depth. Also, from the samples studied, about four times more sessile organisms possess chemical defenses against the sea star than the vagile ones; these represent 50 % of sessile organisms and 35 % of the vagile ones, out of the total tested, being active. Pharmacological activity has not been tested uniformly in all groups, but the results show that relevant activity is found in different phyla, especially in Porifera, Cnidaria, Bryozoa, and Tunicata, but also in others. No relationship between depth and pharmacological activity can be established with the samples tested so far. More studies are needed in order to better understand the ecological relationships among Antarctic invertebrates mediated by natural products and

  9. Strong population genetic structure in a broadcast-spawning Antarctic marine invertebrate.

    PubMed

    Hoffman, Joseph I; Peck, Lloyd S; Linse, Katrin; Clarke, Andrew

    2011-01-01

    Although studies of population genetic structure are commonplace, a strong bias exists toward species from low latitudes and with relatively poor dispersal capabilities. Consequently, we used 280 amplified fragment length polymorphism bands to explore patterns of genetic differentiation among 8 populations of a high latitude broadcast-spawning marine mollusc, the Antarctic limpet Nacella concinna. Over 300 individuals were sampled along a latitudinal gradient spanning the Antarctic Peninsula from Adelaide Island to King George Island (67°-62°S), then to Signy Island (60°S) and South Georgia (54°S). Populations from the Antarctic Peninsula exhibited little genetic structure but were themselves strongly differentiated from both Signy and South Georgia. This finding was analytically highly robust and implies the presence of significant oceanographic barriers to gene flow in a species long regarded as a classic example of a widely dispersing broadcast spawner.

  10. Sensitivity and response time of three common Antarctic marine copepods to metal exposure.

    PubMed

    Zamora, Lara Marcus; King, Catherine K; Payne, Sarah J; Virtue, Patti

    2015-02-01

    Understanding the sensitivity of Antarctic marine organisms to metals is essential in order to manage environmental contamination risks. To date toxicity studies conducted on Antarctic marine species are limited. This study is the first to examine the acute effects of copper and cadmium on three common coastal Antarctic copepods: the calanoids Paralabidocera antarctica and Stephos longipes, and the cyclopoid Oncaea curvata. These copepods responded slowly to metal exposure (4-7d) emphasising that the exposure period of 48-96 h commonly used in toxicity tests with temperate and tropical species is not appropriate for polar organisms. We found that a longer 7 d exposure period was the minimum duration appropriate for Antarctic copepods. Although sensitivity to metal exposure varied between species, copper was more toxic than cadmium in all three species. P.antarctica was the most sensitive with 7d LC50 values for copper and cadmium of 20 μg L(-1) and 237 μg L(-1) respectively. Sensitivities to copper were similar for both O. curvata (LC50=64 μg L(-1)) and S. longipes (LC50=56 μg L(-1)), while O. curvata was more sensitive to cadmium (LC50=901 μg L(-1)) than S. longipes (LC50=1250 μg L(-1)). In comparison to copepods from lower latitudes, Antarctic copepods were more sensitive to copper and of similar sensitivity or less sensitive to cadmium. This study highlights the need for longer exposure periods in toxicity tests with slow responding Antarctic biota in order to generate relevant sensitivity data for inclusion in site-specific environmental quality guidelines for Antarctica.

  11. Taxonomic assessment and enzymes production by yeasts isolated from marine and terrestrial Antarctic samples.

    PubMed

    Duarte, A W F; Dayo-Owoyemi, I; Nobre, F S; Pagnocca, F C; Chaud, L C S; Pessoa, A; Felipe, M G A; Sette, L D

    2013-11-01

    The aim of the present study was to investigate the taxonomic identity of yeasts isolated from the Antarctic continent and to evaluate their ability to produce enzymes (lipase, protease and xylanase) at low and moderate temperatures. A total of 97 yeast strains were recovered from marine and terrestrial samples collected in the Antarctica. The highest amount of yeast strains was obtained from marine sediments, followed by lichens, ornithogenic soils, sea stars, Salpa sp., algae, sea urchin, sea squirt, stone with lichens, Nacella concinna, sea sponge, sea isopod and sea snail. Data from polyphasic taxonomy revealed the presence of 21 yeast species, distributed in the phylum Ascomycota (n = 8) and Basidiomycota (n = 13). Representatives of encapsulated yeasts, belonging to genera Rhodotorula and Cryptococcus were recovered from 7 different Antarctic samples. Moreover, Candida glaebosa, Cryptococcus victoriae, Meyerozyma (Pichia) guilliermondii, Rhodotorula mucilaginosa and R. laryngis were the most abundant yeast species recovered. This is the first report of the occurrence of some species of yeasts recovered from Antarctic marine invertebrates. Additionally, results from enzymes production at low/moderate temperatures revealed that the Antarctic environment contains metabolically diverse cultivable yeasts, which could be considered as a target for biotechnological applications. Among the evaluated yeasts in the present study 46.39, 37.11 and 14.43 % were able to produce lipase (at 15 °C), xylanase (at 15 °C) and protease (at 25 °C), respectively. The majority of lipolytic, proteolytic and xylanolytic strains were distributed in the phylum Basidiomycota and were mainly recovered from sea stars, lichens, sea urchin and marine sediments.

  12. Diversity of protease-producing marine bacteria from sub-antarctic environments.

    PubMed

    Cristóbal, Héctor Antonio; López, Maria Alejandra; Kothe, Erika; Abate, Carlos Mauricio

    2011-12-01

    From seawater and the intestines of benthonic organisms collected from the Beagle Channel, Argentina, 230 marine bacteria were isolated. Cultivable bacteria were characterized and classified as psychrotolerant, whereas few isolates were psychrophiles. These isolates were capable of producing proteases at 4 and 15 °C under neutral (pH 7.0), alkaline (pH 10.0) and acidic (pH 4.5) conditions on different media, revealing 62, 33 and 22% producers at cold and 84, 47 and 33% producers at low temperatures, respectively. More protease-producing strains (67%) were detected when isolated from benthic invertebrates as compared to seawater (33%), with protease production under neutral conditions resulting in milk protein hydrolysis halos between 27 and 30 ± 2 mm in diameter. Using sterile 0.22 μm membrane filters, 29 isolates exhibiting extracellular protease activity were detected. These were grouped into six operational taxonomic units by restriction analysis and identified based on 16S rDNA as γ-proteobacteria of the genera Pseudoalteromonas, Pseudomonas, Shewanella, Alteromonas, Aeromonas, and Serratia. Plasmids were found to be harbored by eight strains, mainly within the isolates from benthonic organisms. PMID:21656810

  13. Southern Ocean Asteroidea: a proposed update for the Register of Antarctic Marine Species

    PubMed Central

    Aguera, Antonio; Jossart, Quentin; Danis, Bruno

    2015-01-01

    Abstract Background The Register of Antarctic Marine Species (RAMS, De Broyer et al. 2015) is the regional component of the World Register of Marine Species (WoRMS Editorial Board 2015) in the Southern Ocean. It has been operating for the last ten years, with a special effort devoted towards its completion after the International Polar Year (IPY) in 2007-2008, in the framework of the Census of Antarctic Marine Life (CAML, 2005 - 2010). Its objective is to offer free and open access to a complete register of all known species living in the Southern Ocean, building a workbench of the present taxonomic knowledge for that region. The Antarctic zone defined by this dynamic and community-based tool has been investigated with a particular interest. The Sub-Antarctic zone was a secondary objective during the establishment of the RAMS and is still lacking the impulse of the scientific community for some taxa. New information In the present study, more than 13,000 occurrences records of Asteroidea (Echinodermata) have been compiled within the RAMS area of interest and checked against the RAMS species list of sea stars, using WoRMS Taxon Match tool. Few mismatches (basionym mistakes : i.e. original name misspelled or incorrect) were found within the existing list and 97 unregistered species are actually occurring within the RAMS boundaries. After this update, the number of Asteroidea species was increased by around 50%, now reaching 295 accepted species. PMID:26696769

  14. Impacts of marine instability across the East Antarctic Ice Sheet on Southern Ocean dynamics

    NASA Astrophysics Data System (ADS)

    Phipps, Steven J.; Fogwill, Christopher J.; Turney, Christian S. M.

    2016-09-01

    Recent observations and modelling studies have demonstrated the potential for rapid and substantial retreat of large sectors of the East Antarctic Ice Sheet (EAIS). This has major implications for ocean circulation and global sea level. Here we examine the effects of increasing meltwater from the Wilkes Basin, one of the major marine-based sectors of the EAIS, on Southern Ocean dynamics. Climate model simulations reveal that the meltwater flux rapidly stratifies surface waters, leading to a dramatic decrease in the rate of Antarctic Bottom Water (AABW) formation. The surface ocean cools but, critically, the Southern Ocean warms by more than 1 °C at depth. This warming is accompanied by a Southern Ocean-wide "domino effect", whereby the warming signal propagates westward with depth. Our results suggest that melting of one sector of the EAIS could result in accelerated warming across other sectors, including the Weddell Sea sector of the West Antarctic Ice Sheet. Thus, localised melting of the EAIS could potentially destabilise the wider Antarctic Ice Sheet.

  15. Melting glaciers: a probable source of DDT to the Antarctic marine ecosystem.

    PubMed

    Geisz, Heidi N; Dickhut, Rebecca M; Cochran, Michele A; Fraser, William R; Ducklow, Hugh W

    2008-06-01

    Persistent organic pollutants reach polar regions by long-range atmospheric transport and biomagnify through the food web accumulating in higher trophic level predators. We analyzed Adélie penguin (Pygoscelis adeliae) samples collected from 2004 to 2006 to evaluate current levels of sigmaDDT (p,p'-DDT + p,p'-DDE) in these birds, which are confined to Antarctica. Ratios of p,p'-DDT to p,p'-DDE in Adélie penguins have declined significantly since 1964 indicating current exposure to old rather than new sources of sigmaDDT. However, sigmaDDT has not declined in Adélie penguins from the Western Antarctic Peninsula for more than 30 years and the presence of p,p'-DDT in these birds indicates that there is a current source of DDT to the Antarctic marine food web. DDT has been banned or severely restricted since peak use in the 1970s, implicating glacier meltwater as a likely source for DDT contamination in coastal Antarctic seas. Our estimates indicate that 1-4 kg x y(-1) sigmaDDT are currently being released into coastal waters along the Western Antarctic Ice Sheet due to glacier ablation.

  16. Reprint of: Modeling Antarctic ice sheet and climate variations during Marine Isotope Stage 31

    NASA Astrophysics Data System (ADS)

    DeConto, Robert M.; Pollard, David; Kowalewski, Douglas

    2012-10-01

    Marine Isotope Stage 31 (MIS-31) is one of the major interglacials of the early Pleistocene ~ 1.08 to 1.06 Ma. Data from proximal sediment cores around several sectors of Antarctica indicate strong sea surface warming and ice shelf and sea ice retreat. Benthic deep-sea-core δ18O values at this time are some of the lowest of the Pleistocene, indicating both deep sea warming and reduced global ice volume. A coeval alignment of orbital parameters produces one of the strongest high-latitude summer insolation anomalies of the last several million years. Here we use a 3-D ice sheet-shelf model to simulate the evolution of Antarctic ice sheets through the event, and a global climate model to simulate temperatures and sea ice during peak Antarctic warmth. The ice model predicts nearly complete collapse and subsequent recovery of marine ice in West Antarctica, and the ice and climate model results agree well with proximal sediment core data in the Ross Embayment recovered by the ANDRILL and Cape Roberts drilling projects. The dominant forcing is found to be variations in sub-ice-shelf oceanic melting, with insignificant surface melting of terrestrial ice flanks even during peak warmth. Implications are noted in light of other observations and theories of Pliocene-Pleistocene Antarctic ice sheet variability that do involve surface melt.

  17. How many species in the Southern Ocean? Towards a dynamic inventory of the Antarctic marine species

    NASA Astrophysics Data System (ADS)

    De Broyer, Claude; Danis, Bruno; with 64 SCAR-MarBIN Taxonomic Editors

    2011-03-01

    The IPY sister-projects CAML and SCAR-MarBIN provided a timely opportunity, a strong collaborative framework and an appropriate momentum to attempt assessing the "Known, Unknown and Unknowable" of Antarctic marine biodiversity. To allow assessing the known biodiversity, SCAR-MarBIN "Register of Antarctic Marine Species (RAMS)" was compiled and published by a panel of 64 taxonomic experts. Thanks to this outstanding expertise mobilized for the first time, an accurate list of more than 8100 valid species was compiled and an up-to-date systematic classification comprising more than 16,800 taxon names was established. This taxonomic information is progressively and systematically completed by species occurrence data, provided by literature, taxonomic and biogeographic databases, new data from CAML and other cruises, and museum collections. RAMS primary role was to establish a benchmark of the present taxonomic knowledge of the Southern Ocean biodiversity, particularly important in the context of the growing realization of potential impacts of the global change on Antarctic ecosystems. This, in turn, allowed detecting gaps in knowledge, taxonomic treatment and coverage, and estimating the importance of the taxonomic impediment, as well as the needs for more complete and efficient taxonomic tools. A second, but not less important, role of RAMS was to contribute to the "taxonomic backbone" of the SCAR-MarBIN, OBIS and GBIF networks, to establish a dynamic information system on Antarctic marine biodiversity for the future. The unknown part of the Southern Ocean biodiversity was approached by pointing out what remains to be explored and described in terms of geographical locations and bathymetric zones, habitats, or size classes of organisms. The growing importance of cryptic species is stressed, as they are more and more often detected by molecular studies in several taxa. Relying on RAMS results and on some case studies of particular model groups, the question of the

  18. Efficient preparation of pseudoalteromone A from marine Pseudoalteromonas rubra QD1-2 by combination of response surface methodology and high-speed counter-current chromatography: a comparison with high-performance liquid chromatography.

    PubMed

    Ding, Lijian; He, Shan; Yan, Xiaojun

    2014-05-01

    Pseudoalteromone A (PA) is a cytotoxic and anti-inflammatory ubiquinone discovered recently from a marine bacterium Pseudoalteromonas sp. CGH2XX. In order to meet its sample supply for further in vivo pharmacological investigation, an efficient method was developed for the preparation of PA by combination of response surface methodology (RSM) and high-speed counter-current chromatography (HSCCC) from marine bacterium P. rubra QD1-2. First, optimization of culture conditions was studied by the RSM to enhance PA production. The results indicated that the optimal cultivation condition was peptone (2.21 g/l), yeast extract (3.125 g/l), glucose (0.125 g/l), KBr (0.02 g/l), inoculum size (6.5 %), medium volume (595 ml), initial pH value (7.0), temperature (28 °C). Under the optimized fermentation condition, PA production was 1.04 mg/l with 14.8-fold increase comparing to 0.07 mg/l under original standard fermentation condition. The PA production was further investigated using a 14-l jar fermenter. Compared to the flask culture, P. rubra QD1-2 offered 45 % increase of PA production at 1.51 mg/l. Then, a rapid and efficient method for the separation and purification of PA from crude culture extract was developed using HSCCC. The two-phase solvent system used for HSCCC separation was composed of n-hexane-ethyl acetate-methanol-water (5:5:9:5, v/v/v/v). The isolation was accomplished within 100 min, and the purity of PA was over 95 %. The recovery of the process was 93 %.

  19. Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain UCD-SED8 (Phylum Gammaproteobacteria)

    PubMed Central

    Lee, Ruth D.; Jospin, Guillaume; Lang, Jenna M.; Coil, David A.

    2015-01-01

    Here, we present the draft genome sequence of Pseudoalteromonas tetraodonis UCD-SED8, a marine bacterium normally associated with the production of tetrodotoxin in pufferfish. This strain was isolated from sediment samples surrounding Zostera marina roots collected from Bodega Marine, California. The assembly consists of 4,017,727 bp contained in 35 contigs. PMID:26543114

  20. Genome sequences of two pseudoalteromonas strains isolated from the South china sea.

    PubMed

    Zeng, Zhenshun; Dai, Shikun; Xie, Yunchang; Tian, Xinpeng; Li, Jie; Wang, Xiaoxue

    2014-01-01

    Two Pseudoalteromonas strains, SCSIO 04301 and SCSIO 11900, were isolated from the South China Sea, and both strains form biofilms. Here we present the draft genome sequences of these two strains, which will aid the study of marine microbes that are adapted to marine sediments or are associated with eukaryotic hosts.

  1. The Early Miocene Cape Melville Formation fossil assemblage and the evolution of modern Antarctic marine communities

    NASA Astrophysics Data System (ADS)

    Whittle, Rowan J.; Quaglio, Fernanda; Griffiths, Huw J.; Linse, Katrin; Crame, J. Alistair

    2014-01-01

    The fossil community from the Early Miocene Cape Melville Formation (King George Island, Antarctica) does not show the archaic retrograde nature of modern Antarctic marine communities, despite evidence, such as the presence of dropstones, diamictites and striated rocks, that it was deposited in a glacial environment. Unlike modern Antarctic settings, and the upper units of the Eocene La Meseta Formation on Seymour Island, Antarctica, which are 10 million years older, the Cape Melville Formation community is not dominated by sessile suspension feeding ophiuroids, crinoids or brachiopods. Instead, it is dominated by infaunal bivalves, with a significant component of decapods, similar to present day South American settings. It is possible that the archaic retrograde structure of the modern community did not fully evolve until relatively recently, maybe due to factors such as further cooling and isolation of the continent leading to glaciations, which resulted in a loss of shallow shelf habitats.

  2. Sub-Antarctic marine aerosol: dominant contributions from biogenic sources

    NASA Astrophysics Data System (ADS)

    Schmale, J.; Schneider, J.; Nemitz, E.; Tang, Y. S.; Dragosits, U.; Blackall, T. D.; Trathan, P. N.; Phillips, G. J.; Sutton, M.; Braban, C. F.

    2013-09-01

    Biogenic influences on the composition and characteristics of aerosol were investigated on Bird Island (54°00' S, 38°03' W) in the South Atlantic during November and December 2010. This remote marine environment is characterised by large seabird and seal colonies. The chemical composition of the submicron particles, measured by an aerosol mass spectrometer (AMS), was 21% non-sea-salt sulfate, 2% nitrate, 8% ammonium, 22% organics and 47% sea salt including sea salt sulfate. A new method to isolate the sea spray signature from the high-resolution AMS data was applied. Generally, the aerosol was found to be less acidic than in other marine environments due to the high availability of ammonia, from local fauna emissions. By positive matrix factorisation five different organic aerosol (OA) profiles could be isolated: an amino acid/amine factor (AA-OA, 18% of OA mass), a methanesulfonic acid OA factor (MSA-OA, 25%), a marine oxygenated OA factor (M-OOA, 41%), a sea spray OA fraction (SS-OA, 7%) and locally produced hydrocarbon-like OA (HOA, 9%). The AA-OA was dominant during the first two weeks of November and found to be related with the hatching of penguins in a nearby colony. This factor, rich in nitrogen (N : C ratio = 0.13), has implications for the biogeochemical cycling of nitrogen in the area as particulate matter is often transported over longer distances than gaseous N-rich compounds. The MSA-OA was mainly transported from more southerly latitudes where phytoplankton bloomed. The bloom was identified as one of three sources for particulate sulfate on Bird Island, next to sea salt sulfate and sulfate transported from South America. M-OOA was the dominant organic factor and found to be similar to marine OA observed at Mace Head, Ireland. An additional OA factor highly correlated with sea spray aerosol was identified (SS-OA). However, based on the available data the type of mixture, internal or external, could not be determined. Potassium was not associated

  3. Sub-Antarctic marine aerosol: significant contributions from biogenic sources

    NASA Astrophysics Data System (ADS)

    Schmale, J.; Schneider, J.; Nemitz, E.; Tang, Y. S.; Dragosits, U.; Blackall, T. D.; Trathan, P. N.; Phillips, G. J.; Sutton, M.; Braban, C. F.

    2013-03-01

    Biogenic influences on the composition and characteristics of aerosol were investigated on Bird Island (54°00' S, 38°03' W) in the South Atlantic during November and December 2010. This remote marine environment is characterised by large seabird and seal colonies. The chemical composition of the submicron particles, measured by an aerosol mass spectrometer (AMS), was 21% non-sea salt sulfate 2% nitrate, 7% ammonium, 22% organics and 47% sea salt including sea salt sulfate. A new method to isolate the sea salt signature from the high-resolution AMS data was applied. Generally, the aerosol was found to be less acidic than in other marine environments due to the high availability of ammonia, from local fauna emissions. By positive matrix factorisation five different organic aerosol (OA) profiles could be isolated: an amino acids/amine factor (AA-OA, 18% of OA mass), a methanesulfonic acid OA factor (MSA-OA, 25%), a marine oxygenated OA factor (M-OOA, 40%), a sea salt OA fraction (SS-OA, 7%) and locally produced hydrocarbon-like OA (HOA, 9%). The AA-OA was dominant during the first two weeks of November and found to be related with the hatching of penguins in a nearby colony. This factor, rich in nitrogen (C : N ratio = 0.13), has implications for the biogeochemical cycling of nitrogen in the area as particulate matter is often transported over longer distances than gaseous N-rich compounds. The MSA-OA was mainly transported from more southerly latitudes where phytoplankton bloomed. The bloom was identified as one of three sources for particulate sulfate on Bird Island, next to sea salt sulfate and sulfate transported from South America. M-OOA was the dominant organic factor and found to be similar to marine OA observed at Mace Head, Ireland. An additional OA factor highly correlated with sea salt aerosol was identified (SS-OA). However, based on the available data the type of mixture, internal or external, could not be determined. Potassium was not associated to sea

  4. Penguin eggshell membranes reflect homogeneity of mercury in the marine food web surrounding the Antarctic Peninsula.

    PubMed

    Brasso, Rebecka L; Polito, Michael J; Lynch, Heather J; Naveen, R; Emslie, Steven D

    2012-11-15

    Remote regions such as the Antarctic have become increasingly important for investigations into far-reaching anthropogenic impacts on the environment, most recently in regard to the global mercury cycle. Spatial patterns of mercury availability in four regions of the Antarctic Peninsula were investigated using three species of sympatrically breeding Pygoscelis penguins as biomonitors. Eggshells with intact membranes from Adélie, Gentoo, and Chinstrap penguins were collected at 24 breeding colonies in the South Orkney Islands, South Shetland Islands, eastern Antarctic Peninsula, and western Antarctic Peninsula during the 2006/2007 austral summer. In addition, we compared eggshell membrane mercury concentrations with eggshell stable isotope values (δ(15)N and δ(13)C) to determine if species-specific trophic or foraging habitat preferences influenced female mercury exposure prior to breeding. With few exceptions, mercury concentrations were found to be fairly homogeneous throughout the Antarctic Peninsula suggesting little spatial variation in the risk of exposure to dietary mercury in this food web. Mercury concentrations in Gentoo and Adélie penguins were similar while Chinstrap penguins tended to have higher eggshell membrane mercury concentrations than their congeners. However, inter and intra-specific differences in eggshell membrane mercury concentration were not related to eggshell δ(15)N or δ(13)C values, a likely result of all three species foraging at similar trophic positions. The lack of regional-scale differences in mercury availability in this marine ecosystem may be a reflection of generally uniform atmospheric deposition and upwelling of regionally homogeneous deep water rather than from geographically distinct point sources.

  5. Climate change and the marine ecosystem of the western Antarctic Peninsula

    PubMed Central

    Clarke, Andrew; Murphy, Eugene J; Meredith, Michael P; King, John C; Peck, Lloyd S; Barnes, David K.A; Smith, Raymond C

    2006-01-01

    The Antarctic Peninsula is experiencing one of the fastest rates of regional climate change on Earth, resulting in the collapse of ice shelves, the retreat of glaciers and the exposure of new terrestrial habitat. In the nearby oceanic system, winter sea ice in the Bellingshausen and Amundsen seas has decreased in extent by 10% per decade, and shortened in seasonal duration. Surface waters have warmed by more than 1 K since the 1950s, and the Circumpolar Deep Water (CDW) of the Antarctic Circumpolar Current has also warmed. Of the changes observed in the marine ecosystem of the western Antarctic Peninsula (WAP) region to date, alterations in winter sea ice dynamics are the most likely to have had a direct impact on the marine fauna, principally through shifts in the extent and timing of habitat for ice-associated biota. Warming of seawater at depths below ca 100 m has yet to reach the levels that are biologically significant. Continued warming, or a change in the frequency of the flooding of CDW onto the WAP continental shelf may, however, induce sublethal effects that influence ecological interactions and hence food-web operation. The best evidence for recent changes in the ecosystem may come from organisms which record aspects of their population dynamics in their skeleton (such as molluscs or brachiopods) or where ecological interactions are preserved (such as in encrusting biota of hard substrata). In addition, a southwards shift of marine isotherms may induce a parallel migration of some taxa similar to that observed on land. The complexity of the Southern Ocean food web and the nonlinear nature of many interactions mean that predictions based on short-term studies of a small number of species are likely to be misleading. PMID:17405211

  6. Heterotrophic potential of Atribacteria from deep marine Antarctic sediment

    NASA Astrophysics Data System (ADS)

    Carr, S. A.; Orcutt, B.; Mandernack, K. W.; Spear, J. R.

    2015-12-01

    Bacteria belonging to the newly classified candidate phylum "Atribacteria" (formerly referred to as "OP9" and "JS1") are common in anoxic methane-rich sediments. However, the metabolic functions and biogeochemical role of these microorganisms in the subsurface remains unrealized due to the lack of pure culture representatives. This study observed a steady increase of Atribacteria-related sequences with increasing sediment depth throughout the methane-rich zone of the Adélie Basin, Antarctica (according to a 16S rRNA gene survey). To explore the functional potential of Atribacteria in this basin, samples from various depths (14, 25 and 97 meters below seafloor), were subjected to metagenomic sequencing. Additionally, individual cells were separated from frozen, unpreserved sediment for whole genome amplification. The successful isolation and sequencing of a single-amplified Atribacteria genome from these unpreserved sediments demonstrates a future use of single cell techniques with previously collected and frozen sediments. Our resulting single-cell amplified genome, combined with metagenomic interpretations, provides our first insights to the functional potential of Atribacteria in deep subsurface settings. As observed for non-marine Atribacteria, genomic analyses suggest a heterotrophic metabolism, with Atribacteria potentially producing fermentation products such as acetate, ethanol and CO2. These products may in turn support methanogens within the sediment microbial community and explain the frequent occurrence of Atribacteria in anoxic methane-rich sediments.

  7. Antarctic marine ice sheet retreat in the Ross Sea during the early Holocene

    NASA Astrophysics Data System (ADS)

    Mckay, R. M.; Golledge, N.; Naish, T.; Maas, S.; Levy, R. H.; Kuhn, G.; Lee, J. I.; Dunbar, G. B.

    2015-12-01

    Geological constraints on the timing of the retreat of the Last Glacial Maximum (LGM) Antarctic Ice Sheets provide critical insights into the processes controlling marine-based ice sheet stability. The over-deepened, seaward shallowing bathymetry of Antarctica's continental shelves is ideally configured to promote past, and potentially future, marine ice-sheet instability. The retreat history of the LGM ice sheet in the Ross Sea region is primarily constrained by C-14 ages on coastal beach ridges and relict penguin colonies along the Transantarctic Mountain front in the Western Ross Sea. Although these terrestrial sites offer more reliable dates than imprecise C-14 chronologies derived from bulk marine sediments, they may reflect retreat of local piedmont glaciers derived from East Antarctic outlet glaciers rather than representing the timing of retreat of the ice sheet in the central Ross Embayment. We present a sedimentary facies succession and foraminifera-based C-14 chronology from a core collected beneath the Ross Ice Shelf via a hot water drill access hole used for the ANDRILL Coulman High site survey. The site is to the east of Ross Island and distal from the coast, and yields a minimum age for glacial retreat that is approximately 1000 yrs earlier than suggested by coastal records along the nearby Victoria Land coast. We examine the implications of this constraint on the timing of ice sheet retreat in the context of model simulations and new multi-beam bathymetry data acquired in the Western Ross Sea. On the basis of these data we hypothesize that marine-based ice sheet retreat was triggered by oceanic forcings along most of the Pacific Ocean coastline of Antarctica simultaneously, but continued retreat in the Ross Sea occurred primarily as a consequence of marine ice sheet instability.

  8. Rhodotorula portillonensis sp. nov., a basidiomycetous yeast isolated from Antarctic shallow-water marine sediment.

    PubMed

    Laich, Federico; Vaca, Inmaculada; Chávez, Renato

    2013-10-01

    During the characterization of the mycobiota associated with shallow-water marine environments from Antarctic sea, a novel pink yeast species was isolated. Sequence analysis of the D1/D2 domain of the LSU rDNA gene and 5.8S-ITS regions revealed that the isolated yeast was closely related to Rhodotorula pallida CBS 320(T) and Rhodotorula benthica CBS 9124(T). On the basis of morphological, biochemical and physiological characterization and phylogenetic analyses, a novel basidiomycetous yeast species, Rhodotorula portillonensis sp. nov., is proposed. The type strain is Pi2(T) ( = CBS 12733(T)  = CECT 13081(T)) which was isolated from shallow-water marine sediment in Fildes Bay, King George Island, Antarctica. PMID:23934251

  9. PhAP protease from Pseudoalteromonas haloplanktis TAC125: Gene cloning, recombinant production in E. coli and enzyme characterization

    NASA Astrophysics Data System (ADS)

    de Pascale, D.; Giuliani, M.; De Santi, C.; Bergamasco, N.; Amoresano, A.; Carpentieri, A.; Parrilli, E.; Tutino, M. L.

    2010-08-01

    Cold-adapted proteases have been found to be the dominant activity throughout the cold marine environment, indicating their importance in bacterial acquisition of nitrogen-rich complex organic compounds. However, few extracellular proteases from marine organisms have been characterized so far, and the mechanisms that enable their activity in situ are still largely unknown. Aside from their ecological importance and use as model enzyme for structure/function investigations, cold-active proteolytic enzymes offer great potential for biotechnological applications. Our studies on cold adapted proteases were performed on exo-enzyme produced by the Antarctic marine bacterium Pseudoalteromonas haloplanktis TAC125. By applying a proteomic approach, we identified several proteolytic activities from its culture supernatant. PhAP protease was selected for further investigations. The encoding gene was cloned and the protein was recombinantly produced in E. coli cells. The homogeneous product was biochemically characterised and it turned out that the enzyme is a Zn-dependent aminopeptidase, with an activity dependence from assay temperature typical of psychrophilic enzymes.

  10. Free amino acids in Antarctic aerosol: potential markers for the evolution and fate of marine aerosol

    NASA Astrophysics Data System (ADS)

    Barbaro, E.; Zangrando, R.; Vecchiato, M.; Piazza, R.; Cairns, W. R. L.; Capodaglio, G.; Barbante, C.; Gambaro, A.

    2015-05-01

    To investigate the impact of marine aerosols on global climate change it is important to study their chemical composition and size distribution. Amino acids are a component of the organic nitrogen in aerosols and particles containing amino acids have been found to be efficient ice nuclei. The main aim of this study was to investigate the L- and D-free amino acid composition as possible tracers of primary biological production in Antarctic aerosols from three different areas: two continental bases, Mario Zucchelli Station (MZS) on the coast of the Ross Sea, Concordia Station at Dome C on the Antarctic Plateau, and the Southern Ocean near the Antarctic continent. Studying the size distribution of amino acids in aerosols allowed us to characterize this component of the water-soluble organic carbon (WSOC) in marine aerosols near their source and after long-range transport. The presence of only free L-amino acids in our samples is indicative of the prevalence of phytoplanktonic material. Sampling at these three points allowed us to study the reactivity of these compounds during long-range transport. The mean total amino acid concentration detected at MZS was 11 pmol m-3, a higher percentage of amino acids were found in the fine fraction. The aerosol samples collected at Dome C had the lowest amino acid values (0.7 and 0.8 pmol m-3), and the coarse particles were found to have higher concentrations of amino acids compared to the coastal site. The amino acid composition in the aerosol collected at Dome C had also changed compared to the coastal site, suggesting that physical and chemical transformations had occurred during long range transport. During the sampling cruise on the R/V Italica on the Southern Ocean, high concentrations of amino acids were found in the total suspended particles, this we attribute to the presence of intact biological material (as microorganisms or plant material) in the sample.

  11. The Register of Antarctic Marine Species (RAMS): a ten-year appraisal

    PubMed Central

    Jossart, Quentin; Moreau, Camille; Agüera, Antonio; Broyer, Claude De; Danis, Bruno

    2015-01-01

    Abstract The Register of Antarctic Marine Species (RAMS) is a marine species database that manages an authoritative taxonomic list of species occurring in the Southern Ocean. RAMS links with several other initiatives managing biogeographic or genomics information. The current paper aims to briefly present RAMS and provides an updated snapshot of its contents, in the form of a DarwinCore checklist (available through http://ipt.biodiversity.aq/resource.do?r=rams) and illustrative barplots. Moreover, this article presents a ten year appraisal (since the creation of RAMS). This appraisal first focuses on RAMS bibliometrics. We observed that RAMS was cited (Google Scholar) in 50 distinct publications among which 32 were peer-reviewed in 18 different journals. Three journals (Antarctic Science, Polar Biology, ZooKeys) represent almost 40% of these peer-review publications. The second appraisal focuses on the evolution of new RAMS records. We observed an important decrease in data additions since 2011. As a case study, we focused on an original dataset for a specific group (Asteroidea, Echinodermata). It appears that around one hundred species of asteroids are lacking in RAMS despite the relatively high availability of these data. This suggests that the users’ community (or collaborative projects such as AquaRES) could be helpful in order to maintain the RAMS database over the long term. PMID:26478709

  12. The Register of Antarctic Marine Species (RAMS): a ten-year appraisal.

    PubMed

    Jossart, Quentin; Moreau, Camille; Agüera, Antonio; Broyer, Claude De; Danis, Bruno

    2015-01-01

    The Register of Antarctic Marine Species (RAMS) is a marine species database that manages an authoritative taxonomic list of species occurring in the Southern Ocean. RAMS links with several other initiatives managing biogeographic or genomics information. The current paper aims to briefly present RAMS and provides an updated snapshot of its contents, in the form of a DarwinCore checklist (available through http://ipt.biodiversity.aq/resource.do?r=rams) and illustrative barplots. Moreover, this article presents a ten year appraisal (since the creation of RAMS). This appraisal first focuses on RAMS bibliometrics. We observed that RAMS was cited (Google Scholar) in 50 distinct publications among which 32 were peer-reviewed in 18 different journals. Three journals (Antarctic Science, Polar Biology, ZooKeys) represent almost 40% of these peer-review publications. The second appraisal focuses on the evolution of new RAMS records. We observed an important decrease in data additions since 2011. As a case study, we focused on an original dataset for a specific group (Asteroidea, Echinodermata). It appears that around one hundred species of asteroids are lacking in RAMS despite the relatively high availability of these data. This suggests that the users' community (or collaborative projects such as AquaRES) could be helpful in order to maintain the RAMS database over the long term. PMID:26478709

  13. Development of a genetic system for the deep-sea psychrophilic bacterium Pseudoalteromonas sp. SM9913

    PubMed Central

    2014-01-01

    Background Pseudoalteromonas species are a group of marine gammaproteobacteria frequently found in deep-sea sediments, which may play important roles in deep-sea sediment ecosystem. Although genome sequence analysis of Pseudoalteromonas has revealed some specific features associated with adaptation to the extreme deep-sea environment, it is still difficult to study how Pseudoalteromonas adapt to the deep-sea environment due to the lack of a genetic manipulation system. The aim of this study is to develop a genetic system in the deep-sea sedimentary bacterium Pseudoalteromonas sp. SM9913, making it possible to perform gene mutation by homologous recombination. Results The sensitivity of Pseudoalteromonas sp. SM9913 to antibiotic was investigated and the erythromycin resistance gene was chosen as the selective marker. A shuttle vector pOriT-4Em was constructed and transferred into Pseudoalteromonas sp. SM9913 through intergeneric conjugation with an efficiency of 1.8 × 10-3, which is high enough to perform the gene knockout assay. A suicide vector pMT was constructed using pOriT-4Em as the bone vector and sacB gene as the counterselective marker. The epsT gene encoding the UDP-glucose lipid carrier transferase was selected as the target gene for inactivation by in-frame deletion. The epsT was in-frame deleted using a two-step integration–segregation strategy after transferring the suicide vector pMT into Pseudoalteromonas sp. SM9913. The ΔepsT mutant showed approximately 73% decrease in the yield of exopolysaccharides, indicating that epsT is an important gene involved in the EPS production of SM9913. Conclusions A conjugal transfer system was constructed in Pseudoalteromonas sp. SM9913 with a wide temperature range for selection and a high transfer efficiency, which will lay the foundation of genetic manipulation in this strain. The epsT gene of SM9913 was successfully deleted with no selective marker left in the chromosome of the host, which thus make it

  14. Draft Genome Sequence of Pseudoalteromonas sp. Strain ECSMB14103, Isolated from the East China Sea.

    PubMed

    Guo, Xing-Pan; Ding, De-Wen; Bao, Wei-Yang; Yang, Jin-Long

    2015-01-01

    Pseudoalteromonas sp. strain ECSMB14103 was isolated from marine biofilms formed on the East China Sea. The draft genome sequence comprises 4.11 Mp with a G+C content of 39.7%. The information from the draft genome will contribute to an understanding of bacteria-animal interaction. PMID:25908138

  15. Characterization of self-generated variants in Pseudoalteromonas lipolytica biofilm with increased antifouling activities.

    PubMed

    Zeng, Zhenshun; Guo, Xing-Pan; Li, Baiyuan; Wang, Pengxia; Cai, Xingsheng; Tian, Xinpeng; Zhang, Si; Yang, Jin-Long; Wang, Xiaoxue

    2015-12-01

    Pseudoalteromonas is widespread in various marine environments, and most strains can affect invertebrate larval settlement and metamorphosis by forming biofilms. However, the impact and the molecular basis of population diversification occurring in Pseudoalteromonas biofilms are poorly understood. Here, we show that morphological diversification is prevalent in Pseudoalteromonas species during biofilm formation. Two types of genetic variants, wrinkled (frequency of 12±5%) and translucent (frequency of 5±3%), were found in Pseudoalteromonas lipolytica biofilms. The inducing activities of biofilms formed by the two variants on larval settlement and metamorphosis of the mussel Mytilus coruscus were significantly decreased, suggesting strong antifouling activities. Using whole-genome re-sequencing combined with genetic manipulation, two genes were identified to be responsible for the morphology alternations. A nonsense mutation in AT00_08765 led to a wrinkled morphology due to the overproduction of cellulose, whereas a point mutation in AT00_17125 led to a translucent morphology via a reduction in capsular polysaccharide production. Taken together, the results suggest that the microbial behavior on larval settlement and metamorphosis in marine environment could be affected by the self-generated variants generated during the formation of marine biofilms, thereby rendering potential application in biocontrol of marine biofouling.

  16. Marine Ecosystem Response to Rapid Climate Warming on the West Antarctic Peninsula (Invited)

    NASA Astrophysics Data System (ADS)

    Ducklow, H.; Baker, K. S.; Doney, S. C.; Fraser, B.; Martinson, D. G.; Meredith, M. P.; Montes-Hugo, M. A.; Sailley, S.; Schofield, O.; Sherrell, R. M.; Stammerjohn, S. E.; Steinberg, D. K.

    2010-12-01

    The Palmer, Antarctica LTER builds on meteorological, ocean color and seabird observations since the late 1970s. It occupies annually in summer a regional-scale grid extending 700 km northward from Charcot Island to Anvers Island, and 200 km cross-shelf from the coast to the shelfbreak. In addition to routine CTD profiles and zooplankton tows throughout the grid, the observing system also includes Slocum Glider surveys and thermistor moorings. Geophysical changes include +6C atmospheric warming in winter since 1950, a 20% increase in heat content over the continental shelf since 1990, a surface ocean warming of +1C since 1950, an 83-day reduction in sea ice duration (advance 48 days later, retreat 35 days earlier) over the greater southern Bellingshausen Sea region from 1979-2007, intensification of westerly winds and differential changes in cloudiness. In response to these large changes in the regional climate, the marine ecosystem of the western Peninsula is changing at all trophic levels from diatoms to penguins. Ocean color indicates differential changes in phytoplankton stocks in response to regional decreases in sea ice cover. Surface chlorophyll has declined 89% in the north and increased 67% in the south. Antarctic krill and salps have declined and increased in our study area, respectively. Penguin diet sampling suggests changes in populations or distributions of the Antarctic Silverfish in the Anvers Island vicinity, possibly in response to ocean warming. Adélie penguins have declined 75% from 15000 to <3000 pairs at since 1975 in response to changes in food availability and increased late spring snow accumulation. Changes in pygoscelid penguin breeding populations in the Anvers Island vicinity of the West Antarctic Peninsula

  17. Hierarchical population genetic structure in a direct developing antarctic marine invertebrate.

    PubMed

    Hoffman, Joseph I; Clarke, Andrew; Clark, Melody S; Peck, Lloyd S

    2013-01-01

    Understanding the relationship between life-history variation and population structure in marine invertebrates is not straightforward. This is particularly true of polar species due to the difficulty of obtaining samples and a paucity of genomic resources from which to develop nuclear genetic markers. Such knowledge, however, is essential for understanding how different taxa may respond to climate change in the most rapidly warming regions of the planet. We therefore used over two hundred polymorphic Amplified Fragment Length Polymorphisms (AFLPs) to explore population connectivity at three hierachical spatial scales in the direct developing Antarctic topshell Margarella antarctica. To previously published data from five populations spanning a 1500 km transect along the length of the Western Antarctic Peninsula, we added new AFLP data for four populations separated by up to 6 km within Ryder Bay, Adelaide Island. Overall, we found a nonlinear isolation-by-distance pattern, suggestive of weaker population structure within Ryder Bay than is present over larger spatial scales. Nevertheless, significantly positive F st values were obtained in all but two of ten pairwise population comparisons within the bay following Bonferroni correction for multiple tests. This is in contrast to a previous study of the broadcast spawner Nacella concinna that found no significant genetic differences among several of the same sites. By implication, the topshell's direct-developing lifestyle may constrain its ability to disperse even over relatively small geographic scales.

  18. MARINE-DERIVED DINOFLAGELLATES IN ANTARCTIC SALINE LAKES: COMMUNITY COMPOSITION AND ANNUAL DYNAMICS(1) *[link].

    PubMed

    Rengefors, Karin; Laybourn-Parry, Johanna; Logares, Ramiro; Marshall, William A; Hansen, Gert

    2008-06-01

    The saline lakes of the Vestfold Hills in Antarctica offer a remarkable natural laboratory where the adaptation of planktonic protists to a range of evolving physiochemical conditions can be investigated. This study illustrates how an ancestral marine community has undergone radical simplification leaving a small number of well-adapted species. Our objective was to investigate the species composition and annual dynamics of dinoflagellate communities in three saline Antarctic lakes. We observed that dinoflagellates occur year-round despite extremely low PAR during the southern winter, which suggests significant mixotrophic or heterotrophic activity. Only a small number of dominant dinoflagellate species were found in each lake, in contrast to the species-rich Southern Ocean from which the lake communities are believed to be derived. We verified that the lake species were representatives of the marine polar dinoflagellate community, and not freshwater species. Polarella glacialis Montresor, Procaccini et Stoecker, a bipolar marine species, was for the first time described in a lake habitat and was an important phototrophic component in the higher salinity lakes. In the brackish lakes, we found a new sibling species to the brackish-water species Scrippsiella hangoei (J. Schiller) J. Larsen, previously observed only in the Baltic Sea.

  19. Divergence between Antarctic and South American marine invertebrates: What molecular biology tells us about Scotia Arc geodynamics and the intensification of the Antarctic Circumpolar Current

    NASA Astrophysics Data System (ADS)

    Poulin, Elie; González-Wevar, Claudio; Díaz, Angie; Gérard, Karin; Hüne, Mathias

    2014-12-01

    Continental drift processes such as major gateway openings have been historically advocated to explain the distribution of marine benthic taxa in the Southern Ocean (SO). The separation between Antarctic Peninsula and the southern tip of South America together with the onset of the Antarctic Circumpolar Current (ACC) represent the final step for the complete isolation of the Antarctic region. However, there is still controversy concerning the timing and mode of this process, and especially about the role of the Scotia Arc geodynamics in the development of a fully deep and intensified ACC circulation. Based on mitochondrial Cytochrome c Oxidase Subunit I (COI) sequences obtained from different taxa, we performed molecular comparisons between Antarctic and South American relatives to provide independent time estimations of Antarctica's isolation. We include in the analyses congeneric Antarctic and Patagonian near-shore marine benthic invertebrates including indirect developers (Nacella, Yoldia, Sterechinus, and Parbolasia) and brooders (Xymenopsis and Trophonella). Considering the levels of genetic differentiation between relatives from both regions and assuming the molecular clock hypothesis, we estimated the onset of their respective divergence. On one hand, similar levels of genetic distance in broadcast-spawners (7%-8.3%) support the hypothesis that the development of an effective barrier between Antarctica and South America occurred almost simultaneously for these groups. Divergence time estimations based on specific substitution rates indicate that the separation occurred near the Mio-Pliocene transition, long after the physical separation of both continents. Genetic distance and divergence time estimation in direct developers indicate an older separation time, close to the mid-Miocene. Even when the analyzed groups included both broadcast-spawners and brooder organisms, the divergence between Antarctic and South America lineages rather than being related to

  20. Marine ice regulates the future stability of a large Antarctic ice shelf.

    PubMed

    Kulessa, Bernd; Jansen, Daniela; Luckman, Adrian J; King, Edward C; Sammonds, Peter R

    2014-01-01

    The collapses of the Larsen A and B ice shelves on the Antarctic Peninsula in 1995 and 2002 confirm the impact of southward-propagating climate warming in this region. Recent mass and dynamic changes of Larsen B's southern neighbour Larsen C, the fourth largest ice shelf in Antarctica, may herald a similar instability. Here, using a validated ice-shelf model run in diagnostic mode, constrained by satellite and in situ geophysical data, we identify the nature of this potential instability. We demonstrate that the present-day spatial distribution and orientation of the principal stresses within Larsen C ice shelf are akin to those within pre-collapse Larsen B. When Larsen B's stabilizing frontal portion was lost in 1995, the unstable remaining shelf accelerated, crumbled and ultimately collapsed. We hypothesize that Larsen C ice shelf may suffer a similar fate if it were not stabilized by warm and mechanically soft marine ice, entrained within narrow suture zones.

  1. Rapid Holocene thinning of an East Antarctic outlet glacier driven by marine ice sheet instability

    PubMed Central

    Jones, R. S.; Mackintosh, A. N.; Norton, K. P.; Golledge, N. R.; Fogwill, C. J.; Kubik, P. W.; Christl, M.; Greenwood, S. L.

    2015-01-01

    Outlet glaciers grounded on a bed that deepens inland and extends below sea level are potentially vulnerable to ‘marine ice sheet instability'. This instability, which may lead to runaway ice loss, has been simulated in models, but its consequences have not been directly observed in geological records. Here we provide new surface-exposure ages from an outlet of the East Antarctic Ice Sheet that reveal rapid glacier thinning occurred approximately 7,000 years ago, in the absence of large environmental changes. Glacier thinning persisted for more than two and a half centuries, resulting in hundreds of metres of ice loss. Numerical simulations indicate that ice surface drawdown accelerated when the otherwise steadily retreating glacier encountered a bedrock trough. Together, the geological reconstruction and numerical simulations suggest that centennial-scale glacier thinning arose from unstable grounding line retreat. Capturing these instability processes in ice sheet models is important for predicting Antarctica's future contribution to sea level change. PMID:26608558

  2. Soluble recombinant protein production in Pseudoalteromonas haloplanktis TAC125.

    PubMed

    Giuliani, Maria; Parrilli, Ermenegilda; Sannino, Filomena; Apuzzo, Gennaro; Marino, Gennaro; Tutino, Maria Luisa

    2015-01-01

    Solubility/activity issues are often experienced when immunoglobulin fragments are produced in conventional microbial cell factories. Although several experimental approaches have been followed to solve, or at least minimize, the accumulation of the recombinant proteins into insoluble aggregates, sometimes the only alternative strategy is changing the protein production platform. In this chapter we describe the use of Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 as host of choice for the production of the heavy-chain antibody fragment VHHD6.1. Combining the use of a regulated psychrophilic gene expression system with an optimized fermentation process in defined growth medium, we obtained the recombinant VHHD6.1 in fully soluble form and correctly translocated into host periplasmic space.

  3. Antarctic Marine Biodiversity – What Do We Know About the Distribution of Life in the Southern Ocean?

    PubMed Central

    Griffiths, Huw J.

    2010-01-01

    The remote and hostile Southern Ocean is home to a diverse and rich community of life that thrives in an environment dominated by glaciations and strong currents. Marine biological studies in the region date back to the nineteenth century, but despite this long history of research, relatively little is known about the complex interactions between the highly seasonal physical environment and the species that inhabit the Southern Ocean. Oceanographically, the Southern Ocean is a major driver of global ocean circulation and plays a vital role in interacting with the deep water circulation in each of the Pacific, Atlantic, and Indian oceans. The Census of Antarctic Marine Life and the Scientific Committee on Antarctic Research Marine Biodiversity Information Network (SCAR-MarBIN) have strived to coordinate and unify the available scientific expertise and biodiversity data to improve our understanding of Southern Ocean biodiversity. Taxonomic lists for all marine species have been compiled to form the Register of Antarctic Marine Species, which currently includes over 8,200 species. SCAR-MarBIN has brought together over 1 million distribution records for Southern Ocean species, forming a baseline against which future change can be judged. The sample locations and numbers of known species from different regions were mapped and the depth distributions of benthic samples plotted. Our knowledge of the biodiversity of the Southern Ocean is largely determined by the relative inaccessibility of the region. Benthic sampling is largely restricted to the shelf; little is known about the fauna of the deep sea. The location of scientific bases heavily influences the distribution pattern of sample and observation data, and the logistical supply routes are the focus of much of the at-sea and pelagic work. Taxa such as mollusks and echinoderms are well represented within existing datasets with high numbers of georeferenced records. Other taxa, including the species-rich nematodes, are

  4. Reproductive performance and organochlorine pollutants in an Antarctic marine top predator: the south polar skua.

    PubMed

    Bustnes, Jan O; Tveraa, Torkild; Varpe, Øystein; Henden, John A; Skaare, Janneche U

    2007-10-01

    Despite low levels of organochlorine contaminants (OCs) in Antarctic biota, some compounds may exceed the levels in equivalent Arctic species, and previous studies have found biochemical evidence of pollutant exposure in south polar skuas (Catharacta maccormicki), a common marine top predator in the region. In this study we examined relationships between fitness components (fecundity and adult return rate between breeding seasons) and concentrations of OCs in this species. In 65 nests, both males and females were caught, and using principal component analyses (PCA) we produced composite measurements (PC1 and PC2) of six highly correlated OCs measured in blood samples. Although the concentrations of OC were below those documented to have reproductive effects in other aquatic birds, we found that the eggs of females with high levels of OCs in the blood hatched later, and their chicks were in poorer condition at hatching, than females with low OC levels. Thus OCs may delay reproduction and reduce foetal growth in the skuas. However, there was no relationship between the parents' OC residues and the occurrence of non-viable eggs, although the proportion of nests containing non-viable eggs was high (47%). Moreover, there were no significant relationships between OCs and reproductive variables in males, even if males had higher OC levels than females, and no associations between OCs and adult return rate between breeding seasons. PMID:17561256

  5. Juveniles Are More Resistant to Warming than Adults in 4 Species of Antarctic Marine Invertebrates.

    PubMed

    Peck, Lloyd S; Souster, Terri; Clark, Melody S

    2013-01-01

    Juvenile stages are often thought to be less resistant to thermal challenges than adults, yet few studies make direct comparisons using the same methods between different life history stages. We tested the resilience of juvenile stages compared to adults in 4 species of Antarctic marine invertebrate over 3 different rates of experimental warming. The species used represent 3 phyla and 4 classes, and were the soft-shelled clam Laternula elliptica, the sea cucumber Cucumaria georgiana, the sea urchin Sterechinus neumayeri, and the seastar Odontaster validus. All four species are widely distributed, locally abundant to very abundant and are amongst the most important in the ecosystem for their roles. At the slowest rate of warming used (1°C 3 days(-1)) juveniles survived to higher temperatures than adults in all species studied. At the intermediate rate (1°C day(-1)) juveniles performed better in 3 of the 4 species, with no difference in the 4(th), and at the fastest rate of warming (1°C h(-1)) L. elliptica adults survived to higher temperatures than juveniles, but in C. georgiana juveniles survived to higher temperatures than adults and there were no differences in the other species. Oxygen limitation may explain the better performance of juveniles at the slower rates of warming, whereas the loss of difference between juveniles and adults at the fastest rate of warming suggests another mechanism sets the temperature limit here.

  6. Marine ice regulates the future stability of a large Antarctic ice shelf

    PubMed Central

    Kulessa, Bernd; Jansen, Daniela; Luckman, Adrian J.; King, Edward C.; Sammonds, Peter R.

    2014-01-01

    The collapses of the Larsen A and B ice shelves on the Antarctic Peninsula in 1995 and 2002 confirm the impact of southward-propagating climate warming in this region. Recent mass and dynamic changes of Larsen B’s southern neighbour Larsen C, the fourth largest ice shelf in Antarctica, may herald a similar instability. Here, using a validated ice-shelf model run in diagnostic mode, constrained by satellite and in situ geophysical data, we identify the nature of this potential instability. We demonstrate that the present-day spatial distribution and orientation of the principal stresses within Larsen C ice shelf are akin to those within pre-collapse Larsen B. When Larsen B’s stabilizing frontal portion was lost in 1995, the unstable remaining shelf accelerated, crumbled and ultimately collapsed. We hypothesize that Larsen C ice shelf may suffer a similar fate if it were not stabilized by warm and mechanically soft marine ice, entrained within narrow suture zones. PMID:24751641

  7. Draft Genome Sequences of Two Pseudoalteromonas porphyrae Strains Isolated from Seagrass Sediment.

    PubMed

    Lee, Ruth D; Jospin, Guillaume; Lang, Jenna M; Eisen, Jonathan A; Coil, David A

    2016-01-01

    Here, we present the draft genome sequences of Pseudoalteromonas porphyrae UCD-SED9 and UCD-SED14 (phylum Proteobacteria). These strains were isolated from sediment surrounding the roots of the seagrass, Zostera marina, collected near the UC, Davis Bodega Marine Laboratory (Bodega Bay, California). The assemblies contain 4,847,456 bp and 4,817,752 bp, respectively. PMID:26988038

  8. Draft Genome Sequences of Two Pseudoalteromonas porphyrae Strains Isolated from Seagrass Sediment

    PubMed Central

    Lee, Ruth D.; Jospin, Guillaume; Lang, Jenna M.; Coil, David A.

    2016-01-01

    Here, we present the draft genome sequences of Pseudoalteromonas porphyrae UCD-SED9 and UCD-SED14 (phylum Proteobacteria). These strains were isolated from sediment surrounding the roots of the seagrass, Zostera marina, collected near the UC, Davis Bodega Marine Laboratory (Bodega Bay, California). The assemblies contain 4,847,456 bp and 4,817,752 bp, respectively. PMID:26988038

  9. Heat loss in air of an Antarctic marine mammal, the Weddell seal.

    PubMed

    Mellish, Jo-Ann; Hindle, Allyson; Skinner, John; Horning, Markus

    2015-01-01

    The conflicting needs of homeostasis in air versus water complicate our understanding of thermoregulation in marine mammals. Large-scale modeling efforts directed at predicting the energetic impact of changing sea ice conditions on polar ecosystems require a better understanding of thermoregulation in air of free-ranging animals. We utilized infrared imaging as an indirect approach to determine surface temperatures of dry, hauled-out Weddell seals (Leptonychotes weddellii, n = 35) of varying age and body condition during the Antarctic summer. The study groups provided a fivefold range in body mass and a threefold range in blubber depth. Surface temperature (T s) did not vary by body region (head, shoulder, axilla, torso, hip, flippers). Average seal T s (mean 13.9 ± 11.2 °C) was best described through a combination of the physical traits of body mass and environmental variables of ambient temperature T air, and wind speed. Additional factors of ice temperature (T ice), relative humidity and cloud cover did not improve the model. Heat transfer model estimates suggested that radiation contributed 56.6 ± 7.7 % of total heat loss. Convection and conduction accounted for the remaining 15.7 ± 12.3 and 27.7 ± 9.3 %, respectively. Heat loss by radiation was primarily influenced by body mass and wind speed, whereas convective heat loss was influenced primarily by blubber depth and wind speed. Conductive heat loss was modeled largely as a function of physical traits of mass and blubber depth rather than any environmental covariates, and therefore was substantially higher in animals in leaner condition. PMID:25378218

  10. Heat loss in air of an Antarctic marine mammal, the Weddell seal.

    PubMed

    Mellish, Jo-Ann; Hindle, Allyson; Skinner, John; Horning, Markus

    2015-01-01

    The conflicting needs of homeostasis in air versus water complicate our understanding of thermoregulation in marine mammals. Large-scale modeling efforts directed at predicting the energetic impact of changing sea ice conditions on polar ecosystems require a better understanding of thermoregulation in air of free-ranging animals. We utilized infrared imaging as an indirect approach to determine surface temperatures of dry, hauled-out Weddell seals (Leptonychotes weddellii, n = 35) of varying age and body condition during the Antarctic summer. The study groups provided a fivefold range in body mass and a threefold range in blubber depth. Surface temperature (T s) did not vary by body region (head, shoulder, axilla, torso, hip, flippers). Average seal T s (mean 13.9 ± 11.2 °C) was best described through a combination of the physical traits of body mass and environmental variables of ambient temperature T air, and wind speed. Additional factors of ice temperature (T ice), relative humidity and cloud cover did not improve the model. Heat transfer model estimates suggested that radiation contributed 56.6 ± 7.7 % of total heat loss. Convection and conduction accounted for the remaining 15.7 ± 12.3 and 27.7 ± 9.3 %, respectively. Heat loss by radiation was primarily influenced by body mass and wind speed, whereas convective heat loss was influenced primarily by blubber depth and wind speed. Conductive heat loss was modeled largely as a function of physical traits of mass and blubber depth rather than any environmental covariates, and therefore was substantially higher in animals in leaner condition.

  11. The Early Origin of the Antarctic Marine Fauna and Its Evolutionary Implications

    PubMed Central

    Crame, J. Alistair; Beu, Alan G.; Ineson, Jon R.; Francis, Jane E.; Whittle, Rowan J.; Bowman, Vanessa C.

    2014-01-01

    The extensive Late Cretaceous – Early Paleogene sedimentary succession of Seymour Island, N.E. Antarctic Peninsula offers an unparalleled opportunity to examine the evolutionary origins of a modern polar marine fauna. Some 38 modern Southern Ocean molluscan genera (26 gastropods and 12 bivalves), representing approximately 18% of the total modern benthic molluscan fauna, can now be traced back through at least part of this sequence. As noted elsewhere in the world, the balance of the molluscan fauna changes sharply across the Cretaceous – Paleogene (K/Pg) boundary, with gastropods subsequently becoming more diverse than bivalves. A major reason for this is a significant radiation of the Neogastropoda, which today forms one of the most diverse clades in the sea. Buccinoidea is the dominant neogastropod superfamily in both the Paleocene Sobral Formation (SF) (56% of neogastropod genera) and Early - Middle Eocene La Meseta Formation (LMF) (47%), with the Conoidea (25%) being prominent for the first time in the latter. This radiation of Neogastropoda is linked to a significant pulse of global warming that reached at least 65°S, and terminates abruptly in the upper LMF in an extinction event that most likely heralds the onset of global cooling. It is also possible that the marked Early Paleogene expansion of neogastropods in Antarctica is in part due to a global increase in rates of origination following the K/Pg mass extinction event. The radiation of this and other clades at ∼65°S indicates that Antarctica was not necessarily an evolutionary refugium, or sink, in the Early – Middle Eocene. Evolutionary source – sink dynamics may have been significantly different between the Paleogene greenhouse and Neogene icehouse worlds. PMID:25493546

  12. The Early Origin of the Antarctic Marine Fauna and Its Evolutionary Implications.

    PubMed

    Crame, J Alistair; Beu, Alan G; Ineson, Jon R; Francis, Jane E; Whittle, Rowan J; Bowman, Vanessa C

    2014-01-01

    The extensive Late Cretaceous - Early Paleogene sedimentary succession of Seymour Island, N.E. Antarctic Peninsula offers an unparalleled opportunity to examine the evolutionary origins of a modern polar marine fauna. Some 38 modern Southern Ocean molluscan genera (26 gastropods and 12 bivalves), representing approximately 18% of the total modern benthic molluscan fauna, can now be traced back through at least part of this sequence. As noted elsewhere in the world, the balance of the molluscan fauna changes sharply across the Cretaceous - Paleogene (K/Pg) boundary, with gastropods subsequently becoming more diverse than bivalves. A major reason for this is a significant radiation of the Neogastropoda, which today forms one of the most diverse clades in the sea. Buccinoidea is the dominant neogastropod superfamily in both the Paleocene Sobral Formation (SF) (56% of neogastropod genera) and Early - Middle Eocene La Meseta Formation (LMF) (47%), with the Conoidea (25%) being prominent for the first time in the latter. This radiation of Neogastropoda is linked to a significant pulse of global warming that reached at least 65°S, and terminates abruptly in the upper LMF in an extinction event that most likely heralds the onset of global cooling. It is also possible that the marked Early Paleogene expansion of neogastropods in Antarctica is in part due to a global increase in rates of origination following the K/Pg mass extinction event. The radiation of this and other clades at ∼65°S indicates that Antarctica was not necessarily an evolutionary refugium, or sink, in the Early - Middle Eocene. Evolutionary source - sink dynamics may have been significantly different between the Paleogene greenhouse and Neogene icehouse worlds. PMID:25493546

  13. Environmental response of upper trophic-level predators reveals a system change in an Antarctic marine ecosystem.

    PubMed Central

    Reid, K.; Croxall, J. P.

    2001-01-01

    Long-term changes in the physical environment in the Antarctic Peninsula region have significant potential for affecting populations of Antarctic krill (Euphausia superba), a keystone food web species. In order to investigate this, we analysed data on krill-eating predators at South Georgia from 1980 to 2000. Indices of population size and reproductive performance showed declines in all species and an increase in the frequency of years of low reproductive output. Changes in the population structure of krill and its relationship with reproductive performance suggested that the biomass of krill within the largest size class was sufficient to support predator demand in the 1980s but not in the 1990s. We suggest that the effects of underlying changes in the system on the krill population structure have been amplified by predator-induced mortality, resulting in breeding predators now regularly operating close to the limit of krill availability. Understanding how krill demography is affected by changes in physical environmental factors and by predator consumption and how, in turn, this influences predator performance and survival, is one of the keys to predicting future change in Antarctic marine ecosystems. PMID:11270434

  14. Landscape mapping at sub-Antarctic South Georgia provides a protocol for underpinning large-scale marine protected areas

    NASA Astrophysics Data System (ADS)

    Hogg, Oliver T.; Huvenne, Veerle A. I.; Griffiths, Huw J.; Dorschel, Boris; Linse, Katrin

    2016-10-01

    Global biodiversity is in decline, with the marine environment experiencing significant and increasing anthropogenic pressures. In response marine protected areas (MPAs) have increasingly been adopted as the flagship approach to marine conservation, many covering enormous areas. At present, however, the lack of biological sampling makes prioritising which regions of the ocean to protect, especially over large spatial scales, particularly problematic. Here we present an interdisciplinary approach to marine landscape mapping at the sub-Antarctic island of South Georgia as an effective protocol for underpinning large-scale (105–106  km2) MPA designations. We have developed a new high-resolution (100 m) digital elevation model (DEM) of the region and integrated this DEM with bathymetry-derived parameters, modelled oceanographic data, and satellite primary productivity data. These interdisciplinary datasets were used to apply an objective statistical approach to hierarchically partition and map the benthic environment into physical habitats types. We assess the potential application of physical habitat classifications as proxies for biological structuring and the application of the landscape mapping for informing on marine spatial planning.

  15. Landscape mapping at sub-Antarctic South Georgia provides a protocol for underpinning large-scale marine protected areas

    PubMed Central

    Hogg, Oliver T.; Huvenne, Veerle A. I.; Griffiths, Huw J.; Dorschel, Boris; Linse, Katrin

    2016-01-01

    Global biodiversity is in decline, with the marine environment experiencing significant and increasing anthropogenic pressures. In response marine protected areas (MPAs) have increasingly been adopted as the flagship approach to marine conservation, many covering enormous areas. At present, however, the lack of biological sampling makes prioritising which regions of the ocean to protect, especially over large spatial scales, particularly problematic. Here we present an interdisciplinary approach to marine landscape mapping at the sub-Antarctic island of South Georgia as an effective protocol for underpinning large-scale (105–106  km2) MPA designations. We have developed a new high-resolution (100 m) digital elevation model (DEM) of the region and integrated this DEM with bathymetry-derived parameters, modelled oceanographic data, and satellite primary productivity data. These interdisciplinary datasets were used to apply an objective statistical approach to hierarchically partition and map the benthic environment into physical habitats types. We assess the potential application of physical habitat classifications as proxies for biological structuring and the application of the landscape mapping for informing on marine spatial planning. PMID:27694889

  16. Early Cenozoic radiations in the Antarctic marine realm and their evolutionary implications

    NASA Astrophysics Data System (ADS)

    Crame, Alistair

    2014-05-01

    The extensive and very well exposed Late Cretaceous - Early Paleogene sedimentary succession of Seymour Island, NE Antarctic Peninsula presents a unique opportunity to examine Early Cenozoic evolutionary radiations in a variety of macrofaunal taxa. Building on the extensive pioneer studies by US and Argentinian palaeontologists, recent investigations have focused on refining litho-, bio- and chronostratigraphies, and taxonomic revisions to a number of key groups. Within the numerically dominant Mollusca, the balance of faunas changes significantly across the Cretaceous/Paleogene boundary, with gastropods becoming numerically dominant for the first time in the Early Paleocene Sobral Formation (SF). At this level seven of the 31 gastropod genera present (= 23%) can be referred to modern Southern Ocean taxa and the same figure is maintained in the Early Eocene La Meseta Formation (LMF) where 21 of 63 genera are modern. A major reason for the rise of the gastropods in the earliest Cenozoic of Antarctica is a significant radiation of the Neogastropoda, which today forms one of the largest clades in the sea. 50% of the SF gastropod fauna and 53% of the LMF at the species level are neogastropods. This important burst of speciation is linked to a major pulse of global warming from ~63 - 43Ma when warm temperate conditions prevailed for long intervals of time at 65ºS. The marked Early Paleogene radiation of neogastropods in Antarctica represents a distinct pulse of southern high-latitude taxa that was coeval with similar tropical/subtropical radiations in localities such as the US Gulf Coast and NW Europe. Thus it would appear that the Early Cenozoic radiation of this major taxon was truly global in scale and not just confined to one latitudinal belt. Whereas it is possible to regard a significant proportion of the modern bivalve fauna as relicts, and thus Antarctica as an evolutionary refugium, or sink, it is much less easy to do so for the Neogastropoda. At least in the

  17. Assessing fuel spill risks in polar waters: Temporal dynamics and behaviour of hydrocarbons from Antarctic diesel, marine gas oil and residual fuel oil.

    PubMed

    Brown, Kathryn E; King, Catherine K; Kotzakoulakis, Konstantinos; George, Simon C; Harrison, Peter L

    2016-09-15

    As part of risk assessment of fuel oil spills in Antarctic and subantarctic waters, this study describes partitioning of hydrocarbons from three fuels (Special Antarctic Blend diesel, SAB; marine gas oil, MGO; and intermediate grade fuel oil, IFO 180) into seawater at 0 and 5°C and subsequent depletion over 7days. Initial total hydrocarbon content (THC) of water accommodated fraction (WAF) in seawater was highest for SAB. Rates of THC loss and proportions in equivalent carbon number fractions differed between fuels and over time. THC was most persistent in IFO 180 WAFs and most rapidly depleted in MGO WAF, with depletion for SAB WAF strongly affected by temperature. Concentration and composition remained proportionate in dilution series over time. This study significantly enhances our understanding of fuel behaviour in Antarctic and subantarctic waters, enabling improved predictions for estimates of sensitivities of marine organisms to toxic contaminants from fuels in the region. PMID:27389459

  18. Assessing fuel spill risks in polar waters: Temporal dynamics and behaviour of hydrocarbons from Antarctic diesel, marine gas oil and residual fuel oil.

    PubMed

    Brown, Kathryn E; King, Catherine K; Kotzakoulakis, Konstantinos; George, Simon C; Harrison, Peter L

    2016-09-15

    As part of risk assessment of fuel oil spills in Antarctic and subantarctic waters, this study describes partitioning of hydrocarbons from three fuels (Special Antarctic Blend diesel, SAB; marine gas oil, MGO; and intermediate grade fuel oil, IFO 180) into seawater at 0 and 5°C and subsequent depletion over 7days. Initial total hydrocarbon content (THC) of water accommodated fraction (WAF) in seawater was highest for SAB. Rates of THC loss and proportions in equivalent carbon number fractions differed between fuels and over time. THC was most persistent in IFO 180 WAFs and most rapidly depleted in MGO WAF, with depletion for SAB WAF strongly affected by temperature. Concentration and composition remained proportionate in dilution series over time. This study significantly enhances our understanding of fuel behaviour in Antarctic and subantarctic waters, enabling improved predictions for estimates of sensitivities of marine organisms to toxic contaminants from fuels in the region.

  19. Phylogenentic and enzymatic characterization of psychrophilic and psychrotolerant marine bacteria belong to γ-Proteobacteria group isolated from the sub-Antarctic Beagle Channel, Argentina.

    PubMed

    Cristóbal, Héctor A; Benito, Juliana; Lovrich, Gustavo A; Abate, Carlos M

    2015-05-01

    The phylogenetic and physiological characteristics of cultivable-dependent approaches were determined to establish the diversity of marine bacteria associated with the intestines of benthonic organisms and seawater samples from the Argentina's Beagle Channel. A total of 737 isolates were classified as psychrophlic and psychrotolerant culturable marine bacteria. These cold-adapted microorganisms are capable of producing cold-active glycosyl hydrolases, such as β-glucosidases, celulases, β-galactosidases, xylanases, chitinases, and proteases. These enzymes could have potential biotechnological applications for use in low-temperature manufacturing processes. According to polymerase chain reaction-restriction fragment length polymorphism analysis of part of genes encoding 16S ribosomal DNA (ARDRA) and DNA gyrase subunit B (gyrB-RFLP), 11 operational taxonomic units (OTU) were identified and clustered in known genera using InfoStat software. The 50 isolates selected were sequenced based on near full sequence analysis of 16S rDNA and gyrB sequences and identified by their nearest neighbors ranging between 96 and 99 % of identities. Phylogenetic analyses using both genes allowed relationships between members of the cultured marine bacteria belonging to the γ-Proteobacteria group (Aeromonas, Halteromonas, Pseudomonas, Pseudoalteromonas, Shewanella, Serratia, Colwellia, Glacielocola, and Psychrobacter) to be evaluated. Our research reveals a high diversity of hydrolytic bacteria, and their products actuality has an industrial use in several bioprocesses at low-temperature manufacturing. PMID:25344742

  20. Marine and terrestrial factors affecting Adélie penguin Pygoscelis adeliae chick growth and recruitment off the western Antarctic Peninsula

    USGS Publications Warehouse

    Chapman, Erik W.; Hofmann, Eileen E.; Patterson, Donna L.; Ribic, Christine A.; Fraser, William R.

    2011-01-01

    An individual-based bioenergetics model that simulates the growth of an Adélie penguin Pygoscelis adeliaechick from hatching to fledging was used to assess marine and terrestrial factors that affect chick growth and fledging mass off the western Antarctic Peninsula. Simulations considered the effects on Adélie penguin fledging mass of (1) modification of chick diet through the addition of Antarctic silverfish Pleuragramma antarcticum to an all-Antarctic krillEuphausia superba diet, (2) reduction of provisioning rate which may occur as a result of an environmental stress such as reduced prey availability, and (3) increased thermoregulatory costs due to wetting of chicks which may result from increased precipitation or snow-melt in colonies. Addition of 17% Antarctic silverfish of Age-Class 3 yr (AC3) to a penguin chick diet composed of Antarctic krill increased chick fledging mass by 5%. Environmental stress that results in >4% reduction in provisioning rate or wetting of just 10% of the chick’s surface area decreased fledging mass enough to reduce the chick’s probability of successful recruitment. The negative effects of reduced provisioning and wetting on chick growth can be compensated for by inclusion of Antarctic silverfish of AC3 and older in the chick diet. Results provide insight into climate-driven processes that influence chick growth and highlight a need for field research designed to investigate factors that determine the availability of AC3 and older Antarctic silverfish to foraging Adélie penguins and the influence of snowfall on chick wetting, thermoregulation and adult provisioning rate.

  1. A 2-substituted prodiginine, 2-(p-hydroxybenzyl)prodigiosin, from Pseudoalteromonas rubra.

    PubMed

    Fehér, Domonkos; Barlow, Russell S; Lorenzo, Patricia S; Hemscheidt, Thomas K

    2008-11-01

    In the course of work aimed at the discovery of new pharmaceutical lead compounds from marine bacteria, a lipophilic extract of the bacterium Pseudoalteromonas rubra displayed significant cytotoxicity against SKOV-3, a human ovarian adenocarcinoma cell line. Bioassay-directed fractionation of this extract resulted in the isolation of a series of known and new prodiginine-type azafulvenes. The structure of the major metabolite was elucidated by interpretation of spectroscopic data as a 2-substituted prodigiosin, which we named 2-(p-hydroxybenzyl)prodigiosin (HBPG).

  2. Unexpected fine-scale population structure in a broadcast-spawning Antarctic marine mollusc.

    PubMed

    Hoffman, Joseph I; Clarke, Andy; Clark, Melody S; Fretwell, Peter; Peck, Lloyd S

    2012-01-01

    Several recent empirical studies have challenged the prevailing dogma that broadcast-spawning species exhibit little or no population genetic structure by documenting genetic discontinuities associated with large-scale oceanographic features. However, relatively few studies have explored patterns of genetic differentiation over fine spatial scales. Consequently, we used a hierarchical sampling design to investigate the basis of a weak but significant genetic difference previously reported between Antarctic limpets (Nacella concinna) sampled from Adelaide and Galindez Islands near the base of the Antarctic Peninsula. Three sites within Ryder Bay, Adelaide Island (Rothera Point, Leonie and Anchorage Islands) were each sub-sampled three times, yielding a total of 405 samples that were genotyped at 155 informative Amplified Fragment Length Polymorphisms (AFLPs). Contrary to our initial expectations, limpets from Anchorage Island were found to be subtly, but significantly distinct from those sampled from the other sites. This suggests that local processes may play an important role in generating fine-scale population structure even in species with excellent dispersal capabilities, and highlights the importance of sampling at multiple spatial scales in population genetic surveys.

  3. Unexpected Fine-Scale Population Structure in a Broadcast-Spawning Antarctic Marine Mollusc

    PubMed Central

    Hoffman, Joseph I.; Clarke, Andy; Clark, Melody S.; Fretwell, Peter; Peck, Lloyd S.

    2012-01-01

    Several recent empirical studies have challenged the prevailing dogma that broadcast-spawning species exhibit little or no population genetic structure by documenting genetic discontinuities associated with large-scale oceanographic features. However, relatively few studies have explored patterns of genetic differentiation over fine spatial scales. Consequently, we used a hierarchical sampling design to investigate the basis of a weak but significant genetic difference previously reported between Antarctic limpets (Nacella concinna) sampled from Adelaide and Galindez Islands near the base of the Antarctic Peninsula. Three sites within Ryder Bay, Adelaide Island (Rothera Point, Leonie and Anchorage Islands) were each sub-sampled three times, yielding a total of 405 samples that were genotyped at 155 informative Amplified Fragment Length Polymorphisms (AFLPs). Contrary to our initial expectations, limpets from Anchorage Island were found to be subtly, but significantly distinct from those sampled from the other sites. This suggests that local processes may play an important role in generating fine-scale population structure even in species with excellent dispersal capabilities, and highlights the importance of sampling at multiple spatial scales in population genetic surveys. PMID:22403655

  4. Biofilm formation by Pseudoalteromonas ruthenica and its removal by chlorine.

    PubMed

    Saravanan, Periasamy; Nancharaiah, Y Venkata; Venugopalan, Vayalam P; Rao, T Subba; Jayachandran, Seetharaman

    2006-01-01

    The distribution of a recently described marine bacterium, SBT 033 GenBank Accession No. AY723742), Pseudoalteromonas ruthenica, at the seawater intake point, outfall and mixing point of an atomic power plant is described, and its ability to form biofilm was investigated. The effectiveness of the antifouling biocide chlorine in the inactivation of planktonic as well as biofilm cells of P. ruthenica was studied in the laboratory. The results show that the planktonic cells were more readily inactivated than the cells enclosed in a biofilm matrix. Viable counting showed that P. ruthenica cells in biofilms were up to 10 times more resistant to chlorine than those in liquid suspension. Using confocal laser scanning microscopy it was shown that significant detachment of P. ruthenica biofilm developed on a glass substratum could be accomplished by treatment with a dose of 1 mg l-1 chlorine. Chlorine-induced detachment led to a significant reduction in biofilm thickness (up to 69%) and substratum coverage (up to 61%), after 5-min contact time. The results show that P. ruthenica has a remarkable ability to form biofilms but chlorine, a common biocide, can be used to effectively kill and detach these biofilms. PMID:17178570

  5. Antarctic Tectonics: Constraints From an ERS-1 Satellite Marine Gravity Field

    PubMed

    McAdoo; Laxon

    1997-04-25

    A high-resolution gravity field of poorly charted and ice-covered ocean near West Antarctica, from the Ross Sea east to the Weddell Sea, has been derived with the use of satellite altimetry, including ERS-1 geodetic phase, wave-form data. This gravity field reveals regional tectonic fabric, such as gravity lineations, which are the expression of fracture zones left by early (65 to 83 million years ago) Pacific-Antarctic sea-floor spreading that separated the Campbell Plateau and New Zealand continent from West Antarctica. These lineations constrain plate motion history and confirm the hypothesis that Antarctica behaved as two distinct plates, separated from each other by an extensional Bellingshausen plate boundary active in the Amundsen Sea before about 61 million years ago. PMID:9110969

  6. Antarctic Tectonics: Constraints From an ERS-1 Satellite Marine Gravity Field

    PubMed

    McAdoo; Laxon

    1997-04-25

    A high-resolution gravity field of poorly charted and ice-covered ocean near West Antarctica, from the Ross Sea east to the Weddell Sea, has been derived with the use of satellite altimetry, including ERS-1 geodetic phase, wave-form data. This gravity field reveals regional tectonic fabric, such as gravity lineations, which are the expression of fracture zones left by early (65 to 83 million years ago) Pacific-Antarctic sea-floor spreading that separated the Campbell Plateau and New Zealand continent from West Antarctica. These lineations constrain plate motion history and confirm the hypothesis that Antarctica behaved as two distinct plates, separated from each other by an extensional Bellingshausen plate boundary active in the Amundsen Sea before about 61 million years ago.

  7. Polychloronaphthalenes and other dioxin-like compounds in Arctic and Antarctic marine food webs.

    PubMed

    Corsolini, Simonetta; Kannan, Kurunthachalam; Imagawa, Takashi; Focardi, Silvano; Giesy, John P

    2002-08-15

    Here we report accumulation patterns of polychlorinated naphthalenes (PCNs), polychlorinated dibenzo-p-dioxins (PCDDs), polychlorinated dibenzofurans (PCDFs), polychlorinated biphenyls (PCBs), and pesticides (HCB, p,p'DDE) in polar organisms (polar bear from Alaskan Arctic and krill, sharp-spined notothen, crocodile icefish, Antarctic silverfish, Adélie penguin, South polar skua, and Weddell seal from the Ross Sea, Antarctica). PCNs, found in most of the samples, ranged from 1.5 pg/g in krill to 2550 pg/g in South polar skua on a wet weight basis. Lower chlorinated PCNs were the predominant congeners in organisms except skua and polar bear that showed similar PCN homologue patterns. PCDD/F concentrations were <90 pg/g wet wt in polar organisms; PCDD congeners showed peculiar accumulation patterns in different organisms. Correlation existed between PCN and PCB concentrations. PCB, HCF, and p,p'DDE levels were the highest in skua liver (11,150 ng/g wet wt, 345 ng/g wet wt, and 300 ng/g wet wt, respectively). Contribution of PCNs to 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents (TEQ) was negligible (<0.1%) because of the lack of most toxic congeners. The highest TEQ was found in South polar skua liver (45 pg/g, wet weight). This is the first study to document the occurrence of PCNs in Antarctic organisms. High levels of dioxin-like chemicals in skua suggest the importance of intake via diet and migration habits, thus POP detection can be useful to trace migration behavior. Moreover, POP concentrations in penguin and skua eggs prove their transfer from the mother to eggs.

  8. Determinants of individual foraging specialization in large marine vertebrates, the Antarctic and subantarctic fur seals.

    PubMed

    Kernaléguen, Laëtitia; Arnould, John P Y; Guinet, Christophe; Cherel, Yves

    2015-07-01

    The degree of individual specialization in resource use differs widely among wild populations where individuals range from fully generalized to highly specialized. This interindividual variation has profound implications in many ecological and evolutionary processes. A recent review proposed four main ecological causes of individual specialization: interspecific and intraspecific competition, ecological opportunity and predation. Using the isotopic signature of subsampled whiskers, we investigated to what degree three of these factors (interspecific and intraspecific competition and ecological opportunity) affect the population niche width and the level of individual foraging specialization in two fur seal species, the Antarctic and subantarctic fur seals (Arctocephalus gazella and Arctocephalus tropicalis), over several years. Population niche width was greater when the two seal species bred in allopatry (low interspecific competition) than in sympatry or when seals bred in high-density stabilized colonies (high intraspecific competition). In agreement with the niche variation hypothesis (NVH), higher population niche width was associated with higher interindividual niche variation. However, in contrast to the NVH, all Antarctic females increased their niche width during the interbreeding period when they had potential access to a wider diversity of foraging grounds and associated prey (high ecological opportunities), suggesting they all dispersed to a similar productive area. The degree of individual specialization varied among populations and within the annual cycle. Highest levels of interindividual variation were found in a context of lower interspecific or higher intraspecific competition. Contrasted results were found concerning the effect of ecological opportunity. Depending on seal species, females exhibited either a greater or lower degree of individual specialization during the interbreeding period, reflecting species-specific biological constraints

  9. Determinants of individual foraging specialization in large marine vertebrates, the Antarctic and subantarctic fur seals.

    PubMed

    Kernaléguen, Laëtitia; Arnould, John P Y; Guinet, Christophe; Cherel, Yves

    2015-07-01

    The degree of individual specialization in resource use differs widely among wild populations where individuals range from fully generalized to highly specialized. This interindividual variation has profound implications in many ecological and evolutionary processes. A recent review proposed four main ecological causes of individual specialization: interspecific and intraspecific competition, ecological opportunity and predation. Using the isotopic signature of subsampled whiskers, we investigated to what degree three of these factors (interspecific and intraspecific competition and ecological opportunity) affect the population niche width and the level of individual foraging specialization in two fur seal species, the Antarctic and subantarctic fur seals (Arctocephalus gazella and Arctocephalus tropicalis), over several years. Population niche width was greater when the two seal species bred in allopatry (low interspecific competition) than in sympatry or when seals bred in high-density stabilized colonies (high intraspecific competition). In agreement with the niche variation hypothesis (NVH), higher population niche width was associated with higher interindividual niche variation. However, in contrast to the NVH, all Antarctic females increased their niche width during the interbreeding period when they had potential access to a wider diversity of foraging grounds and associated prey (high ecological opportunities), suggesting they all dispersed to a similar productive area. The degree of individual specialization varied among populations and within the annual cycle. Highest levels of interindividual variation were found in a context of lower interspecific or higher intraspecific competition. Contrasted results were found concerning the effect of ecological opportunity. Depending on seal species, females exhibited either a greater or lower degree of individual specialization during the interbreeding period, reflecting species-specific biological constraints

  10. Solar vs. Tidal Forcing of Centennial to Decadal Scale Variability in Marine Sedimentary Records from the Western Antarctic Peninsula

    NASA Astrophysics Data System (ADS)

    Kirkwood, G.; Domack, E.; Brachfeld, S.

    2004-12-01

    Prior studies on Holocene marine sediments from the Antarctic Peninsula, including ODP Site 1098 and USAP N. B. Palmer jumbo piston cores have revealed pronounced multi-century scale variations within a number of paleoenvironmental proxies. In order to fully understand the exact timing of this signal an ultra-high resolution jumbo piston core from the Schollaert Drift was correlated with the well-known Palmer Deep record. A precise and accurate radiocarbon chronology is now available from the former site that utilizes in-situ mollusks, rather than bulk organic matter. The resulting time series spans the last 5000 years over the 20 m length of core NBP99-03 JPC28 and the surface stratigraphy of kasten core NBP01-07 KC8. The corrected and calibrated ages (with an applied reservoir correction of 1170 years) of 10 mollusks dated by the National Ocean Sciences Accelerator Mass Spectrometry Facility and the University of Arizona TAMS facility were used to construct an age-depth profile for JPC28 and KC8. A linear trend (R2 value of 0.993) of the age-depth profile was used to extrapolate the constant time interval between magnetic susceptibility measurements, which were analyzed every 1 cm. Dominant periods in the upper 10 m of the time series were identified using the Arand Spectral Analysis Package (Howell, 2001). This analysis revealed a single pronounced maxima at 160 years, which is inconsistent with the dominant periods found in time series of climate proxies from other sites on the western side of the Antarctic Peninsula. In particular, periods of 200 and 400 years, which are dominant in the Palmer Deep site (Warner and Domack, 2002), are not present in the Schollaert Drift. The spectral peaks derived from the two records are significantly different at the 95% confidence level. The cycles in the Palmer Deep record have been associated with solar variability, where as the 160 year cycle in the Schollaert Drift is close to a 180 year cycle in tidal forces (Keeling

  11. The LARsen Ice Shelf System, Antarctica, LARISSA a Model for Antarctic Integrated System Science (AISS) Investigations using Marine Platforms

    NASA Astrophysics Data System (ADS)

    Domack, E. W.; Huber, B. A.; Vernet, M.; Leventer, A.; Scambos, T. A.; Mosley-Thompson, E. S.; Smith, C. R.; de Batist, M. A.; Yoon, H.; Larissa

    2010-12-01

    The LARISSA program is the first interdisciplinary project funded in the AISS program of the NSF Office of Polar Programs and was officially launched in the closing days of the IPY. This program brings together investigators, students, and media to address the rapid and fundamental changes taking place in the region of the Larsen Ice Shelf and surrounding areas. Scientific foci include: glaciologic and oceanographic interactions, the response of pelagic and benthic ecosystems to ice shelf decay, sedimentary record of ice shelf break disintegration, the geologic evolution of ice shelf systems over the last 100,000 years, paleoclimate/environmental records from marine sediment and ice cores, and the crustal response to ice mass loss at decade to millennial time scales. The first major field season took place this past austral summer aboard the NB Palmer (cruise NBP10-01) which deployed with a multi-layered logistical infrastructure that included: two Bell 220 aircraft, a multifunctional deep water ROV, video guided sediment corer, jumbo piston core, and an array of oceanographic and biological sensors and instruments. In tandem with this ship based operation Twin Otter aircraft supported an ice core team upon the crest of the Bruce Plateau with logistic support provided by the BAS at Rothera Station. Although unusually heavy sea ice prevented much of the original work from being completed in the Larsen Embayment the interdisciplinary approach proved useful. Further the logistical model of ship based aircraft to support interdisciplinary work proved viable, again despite an unusually severe summer meterologic pattern across the northern Antarctic Peninsula. As the program moves forward other vessels will come into play and the model can be applied to interdisciplinary objectives in other regions of Antarctica which are remote and lack land based infrastructure to support coastal field programs in glaciology, geology, or meteorology. This work could then be completed

  12. Recent sediment remolding on a deep shelf, Ross Sea: implications for radiocarbon dating of Antarctic marine sediments

    NASA Astrophysics Data System (ADS)

    Domack, Eugene W.; Taviani, Marco; Rodriguez, Anthonio

    1999-11-01

    Coarse, bioclastic rich sands have been widely reported from the banks of the Antarctic continental shelf but their origin is still poorly known. We report on a suite of coarse sediments recovered from the top of the Mawson Bank in the northwestern Ross Sea. Radiocarbon ages of biogenic calcite, for modern and apparently late Pleistocene deposits, range from 1085±45 to 20,895±250 yr B.P.. Discovery of soft tissue (Ascidian) preserved as an incrustation on a pebble at 2 m depth indicates aggregation of the sediment within several months or a year of core recovery. Radiocarbon ages of acid insoluble organic matter (aiom) are less than those of the foraminifera calcite. The aiom ages are also reversed in sequence, indicating reworking of the sediment during deposition. These observations and a review of recently published literature suggest that much of the bank top sediment in Antarctica is presently undergoing remobilization, under the influence of strong currents and/or icebergs even under interglacical (high-stand) sea levels. These observations point out the need for careful, integrated studies on high latitude marine sediment cores before resultant "ages" alone are used as the foundation for paleoglacial reconstructions.

  13. Effects of ultraviolet light on photosynthesis and pigments of Antarctic marine phytoplankton

    SciTech Connect

    Stephens, F.C.

    1989-01-01

    This field study was conducted at Palmer Station, Anvers Island, Antarctica, during November-December, 1987. The main objectives were to quantify the effects on photosynthetic rates and pigmentation of short-term and long-term exposures of Antarctic phytoplankton to different levels of UV radiation. Phytoplankton and ice algae were exposed to four levels of UV radiation in outdoor incubation chambers: near ambient UV; UV enhanced by approximately 5% over ambient levels; reduced UV-B; and essentially no UV. Results of 4-hour studies showed that rates of phytoplankton photosynthesis were generally inversely related to UV exposure. Higher photosynthetic rates were maintained over a greater range of irradiance levels when UV was removed in photosynthesis-irradiance studies. Photosynthetic pigments did not change with variations in either visible or UV light. After adaptation for 24 hours, photosynthetic rate measured under conditions of essentially no UV was approximately twice that measured under near ambient UV conditions. Results of photosynthesis-irradiance experiments indicate that photosynthetic efficiencies ({alpha}), maximum photosynthetic rates (P{sub max}) and the index of inhibition (I{sub b}) were inversely related to UV levels, probably due at least in part to the loss of chlorophyll a.

  14. Holocene melt-water variations recorded in Antarctic coastal marine benthic assemblages

    SciTech Connect

    Berkman, P.A.

    1992-03-01

    Climate changes can influence the input of meltwater from the polar ice sheets. In Antarctica, signatures of meltwater input during the Holocene may be recorded in the benthic fossils which exist at similar altitudes above sea level in emerged beaches around the continent Interpreting the fossils as meltwater proxy records would be enhanced by understanding the modern ecology of the species in adjacent marine environments. Characteristics of an extant scallop assemblage in West McMurdo Sound, Antarctica, have been evaluated across a summer meltwater gradient to provide examples of meltwater records that may be contained in proximal scallop fossils. Integrating environmental proxies from coastal benthic assemblages around Antarctica, over ecological and geological time scales, is a necessary step in evaluating the marginal responses of the ice sheets to climate changes during the Holocene.

  15. Response of marine sedimentation to upper Holocene climate variability in Maxwell Bay, King George Island, West Antarctic Peninsula

    NASA Astrophysics Data System (ADS)

    Wittenberg, Nina; Hass, Christian; Kuhn, Gerhard

    2013-04-01

    The Western Antarctic Peninsula experiences a temperature increase that is higher than in other parts of Antarctica. Within the last 50 years the tidewater glaciers in the tributary fjords of Maxwell Bay (King George Island) have retreated landwards with increasing speed. Meltwaters mobilize fine-grained sediments and transport those in plumes out of the coves into Maxwell Bay. Our hypothesis is that meltwater sediments characterize warmer climate periods of the Holocene. Marine sediment cores recovered along a profile of the eastern slope of Maxwell Bay were studied. The cores were taken in high-accumulation areas at the entrances of Collins Harbor, Marian and Potter coves. We measured the grain-size distribution in 1-cm steps in each core with a Laser diffraction particle analyzer (range 0.04-2500 µm) in order to resolve shifts in grain size compositions in very high resolution. We undertook different approaches for reliable age determination of the sediments. Since marine biogenic carbonate suitable for radiocarbon age determination is sparse, radiocarbon dating of the extracted humic acid fraction of the bulk sediment was included. Unfortunately, these age determinations turned out to be not reliable, likely because they are overprinted by an unknown older radiocarbon source. Preliminary results suggest that the cores cover approximately the last 2000 years. The magnetic susceptibility (MS) parameter fluctuates throughout the cores. It is negatively correlated to the amount of total organic carbon (TOC) and biogenic opal, suggesting dilution of the MS signal through higher input of organic material. Together with the bathymetry data, sub-bottom profiles reveal information on the interior of the topography and the geometry of the deposited sediments. The profiles obtained in Potter Cove show almost no sediment penetration suggesting either a very thin sediment cover and/or highly reworked unsorted sediments. The sub-bottom profiles from Maxwell Bay penetrate

  16. Antarktis: Das CCAMLR-Übereinkommen (Convention on the Conservation of Antarctic Marine Living Resources) und die illegale Überfischung der südlichen Ozeane

    NASA Astrophysics Data System (ADS)

    Siegel, Volker

    1999-12-01

    The Convention for the Conservation of Antarctic Marine Living Resources (CCAMLR) was ratified in 1982. This Convention was established in the light of a rapidly developing krill fishery in the 1970’s. The objectives of the Convention are the rational use of marine living resources as well as the conservation of the resources and the marine ecosystem. Establishing the principle of the ecosystem approach has been rather progressive in fisheries conventions. From the bery beginning CCAMLR had to deal with problems of over-exploited fish stock from the unregulated fishery of pre-CCAMLR times. Antarctic cod and icefish stock were already heavily harvested or even showed signs of overfishing. Conservation measures and the closure of subareas for several years did not always lead to satisfactorily results. While some stock of icefish recovered to the extent, that a new fishery on a low level could be re-opened, other icefish stocks and especially Antarctic cod stocks have not recovered from this early depletion. A new dimension in the fishery developed in the mid 1990’s, when very conservative conservation measures were introduced for the Dissostichus (toothfish), but due to the high commercial value a large illegal fishery developed rapidly in the Convention area. One additional problem of managing the longline fishery for toothfish is the by-catch and incidental mortality of sea-birds, for which special measures were established to avoid sea-bird mortality. The compliance with the measures and the elimination of the illegal fishery require strong actions of the Commission, the political decision-making body of CCAMLR. A future challange for CCAMLR could be the potentially expanding krill fishery. In the understanding of a precautionary approach, the scientific body of CCAMLR has already started to collect biological data and develop management and monitoring models for this fishery.

  17. Characterization of outer membrane vesicles released by the psychrotolerant bacterium Pseudoalteromonas antarctica NF3

    PubMed Central

    Nevot, Maria; Deroncelé, Víctor; Messner, Paul; Guinea, Jesús; Mercadé, Elena

    2015-01-01

    Summary Pseudoalteromonas antarctica NF3 is an Antarctic psychrotolerant Gram-negative bacterium that accumulates large amounts of an extracellular polymeric substance (EPS) with high protein content. Transmission electron microscopy analysis after high-pressure freezing and freeze substitution (HPF-FS) shows that the EPS is composed of a capsular polymer and large numbers of outer membrane vesicles (OMVs). These vesicles are bilayered structures and predominantly spherical in shape, with an average diameter of 25–70 nm, which is similar to what has been observed in OMVs from other Gram-negative bacteria. Analyses of lipopolysaccharide (LPS), phospholipids and protein profiles of OMVs are consistent with the bacterial outer membrane origin of these vesicles. In an initial attempt to elucidate the functions of OMVs proteins, we conducted a proteomic analysis on 1D SDS-PAGE bands. Those proteins putatively identified match with outer membrane proteins and proteins related to nutrient processing and transport in Gram-negative bacteria. This approach suggests that OMVs present in the EPS from P. antarctica NF3, might function to deliver proteins to the external media, and therefore play an important role in the survival of the bacterium in the extreme Antarctic environment. PMID:16913913

  18. Marine microbial ecology in the sub-Antarctic Zone: Rates of bacterial and phytoplankton growth and grazing by heterotrophic protists

    NASA Astrophysics Data System (ADS)

    Pearce, Imojen; Davidson, Andrew T.; Thomson, Paul G.; Wright, Simon; van den Enden, Rick

    2011-11-01

    The sub-Antarctic zone (SAZ) of the Southern Ocean is considered one of the largest sinks for atmospheric CO 2 and as such is an important region for climate change research. To determine the importance of micro- and nano-heterotrophs in controlling microbial abundance within this region, we determined microbial standing stocks and rates of herbivory and bacterivory in relation to changes in the water masses south of Tasmania. The SAZ-Sense ('Sensitivity of the sub-Antarctic zone to environmental change') cruise traversed the SAZ during mid-late austral summer and focussed on process stations to the southeast (45°S, 153°E) and southwest (46°S, 140°E) of Tasmania and at the Polar Front (54°S, 147°E). Growth and grazing mortality of phytoplankton and bacteria were estimated by the grazing dilution technique using seawater from 10 m depth at 15 sites along the survey, along with concentrations of heterotrophic nanoflagellates (HNF), microzooplankton, bacteria, cyanobacteria and size fractionated (pico-, nano- and micro-sized) chlorophyll a (Chl a). Rates of herbivory ranged from 0.12 to 1.39 d -1 and were highest in the north-eastern SAZ (NE-SAZ) where concentrations of prey (as indicated by Chl a) and microzooplankton were also highest. Rates of herbivory were correlated with total rates of phytoplankton growth, bacterial growth and concentrations of microzooplankton. On average 82%, 67% and 42% primary production d -1 was consumed by microzooplankton and HNF at process stations in the north-western SAZ (NW-SAZ), NE-SAZ and polar frontal zone (PFZ), respectively. In the NW-SAZ, grazing pressure was highest on the pico-sized Chl a fraction, whereas in the NE-SAZ, grazing pressure was more evenly distributed across all three size fractions of Chl a. Bacterivory removed 77%, 93% and 39% of bacterial production d -1 in the NW-SAZ, NE-SAZ and PFZ, respectively, and rates of bacterivory ranged from 0.12 to 1.03 d -1. Rates of bacterivory were highest in the NE

  19. Marine bacterioplankton biomass, activity and community structure in the vicinity of Antarctic icebergs

    NASA Astrophysics Data System (ADS)

    Murray, Alison E.; Peng, Vivian; Tyler, Charlotte; Wagh, Protima

    2011-06-01

    We studied marine bacterioplankton in the Scotia Sea in June 2008 and in the northwest Weddell Sea in March to mid April 2009 in waters proximal to three free-drifting icebergs (SS-1, A-43k, and C-18a), in a region with a high density of smaller icebergs (iceberg alley), and at stations that were upstream of the iceberg trajectories designated as far-field reference sites that were between 16-75 km away. Hydrographic parameters were used to define water masses in which comparisons between bacterioplankton-associated characteristics (abundance, leucine incorporation into protein, aminopeptidase activities and community structure) within and between water masses could be made. Early winter Scotia Sea bacterioplankton had low levels of cells and low heterotrophic production rates in the upper 50 m. Influences of the icebergs on bacterioplankton at this time of year were minimal, if not deleterious, as we found lower levels of heterotrophic production near A-43k in comparison to stations >16 km away. Additionally, the results point to small but significant differences in cell abundance, heterotrophic production, and community structure between the two icebergs studied. These icebergs differed greatly in size and the findings suggest that the larger iceberg had a greater effect. In the NW Weddell Sea in March-mid April bacterioplankton were twice as abundant and had heterotrophic productions rates that were 8-fold higher than what we determined in the Scotia Sea, though levels were still quite low, which is typical for autumn. We did not detect direct iceberg-related influences on the bacterioplankton characteristics studied here. Clues to understanding bacterioplankton responses may lie in the details of community structure, as there were some significant differences in community structure in the winter water and underlying upper circumpolar deep-water masses between stations occupied close to C-18a and at stations 18 km away (i.e. Polaribacter and Pelagibacter

  20. Circum-Antarctic warming events between 4 and 3.5 Ma recorded in marine sediments from the Prydz Bay (ODP Leg 188) and the Antarctic Peninsula (ODP Leg 178) margins

    NASA Astrophysics Data System (ADS)

    Escutia, C.; Bárcena, M. A.; Lucchi, R. G.; Romero, O.; Ballegeer, A. M.; Gonzalez, J. J.; Harwood, D. M.

    2009-11-01

    Our study characterizes glacial and interglacial deposition on two Antarctic margins in order to discriminate between regional and continent-wide early to middle Pliocene warm intervals that caused sea-ice reduction and continental ice sheet retreat. We use a multi-proxy (i.e., sediment facies and grain size, siliceous microfossils, biogenic opal, geochemical composition and clay mineralogy) approach to examine sediments recovered in drill holes from the West Antarctic Peninsula and the East Antarctic Prydz Bay margins, focusing on the climatic record between 4 and 3.5 Ma. Warm conditions in both East and West Antarctica are recorded, which based on our age model correspond to periods of prolonged or extreme warmth correlated with isotopic stages Gi5, Gi1, MG11 and MG7. For the Gi5 interglacial our data corroborates the 60% Dictyocha percentage at 34.60 mbsf previously reported from Prydz Bay and interpreted to indicate a SSST of about 5.6 °C above present. Our higher-resolution sampling interval shows Dictyocha percentages up to 87.5%, suggesting even higher SSSTs above present levels. During MG11, which coincides with the section dated by the magnetic polarity reversal Gilbert-Gauss at 3.58 Ma, SSSTs were tentatively 2.5°-4° warmer than present, and reduced sea-ice cover in Prydz Bay and probably also west of the Antarctic Peninsula is indicated by increased primary productivity. In addition, a reduction of ice sheet size is suggested by the bioturbated and IRD-enriched facies that characterize these high-productivity intervals. Based in our age model and calculated sedimentation rates glacial-interglacial cyclicity between 4 and 3.5 Ma in the cores from Antarctic Peninsula and Prydz Bay Sites, result in frequencies consistent with obliquity and precession forcing. The prolonged early-middle Pliocene warm period was superimposed on a cooling trend recorded by the: 1) increase of the terrigenous sediment supply at all our sites starting between 3.7 and 3.6 Ma

  1. Heavy metals in sediments and soft tissues of the Antarctic clam Laternula elliptica: more evidence as a possible biomonitor of coastal marine pollution at high latitudes?

    PubMed

    Vodopivez, Cristian; Curtosi, Antonio; Villaamil, Edda; Smichowski, Patricia; Pelletier, Emilien; Mac Cormack, Walter P

    2015-01-01

    Studies on metal contamination in 25 de Mayo Island, Antarctica, yielded controversial results. In this work, we analyzed Antarctic marine sediments and Antarctic clam (Laternula elliptica) tissues to investigate the possible use of this mollusk as a biomonitor of metals and to identify the sources of metal pollution. Different types of paint from several buildings from Carlini Station were examined to assess their contribution to the local and random metal pollution. Five sediment samples, 105 L. elliptica specimens (40.2-78.0mm length) and four types of paint were analyzed to quantify Cd, Cr, Cu, Fe, Mn, Pb and Zn using inductively coupled plasma-optical emission spectrometry. Metal concentrations in sediments were lower than the global averages of the earth's crust, with the exception of Cd and Cu. These results were related to the contribution of the local fresh-water runoff. The different varieties of paint showed low levels of Cu, Mn, Fe and Zn, whereas a broad range of values were found in the case of Cr and Pb (20-15,100 μg·g(-1) and 153-115,500 μg·g(-1) respectively). The remains of the paint would be responsible for the significant increases in Cr and Pb which are randomly detected by us and by other authors. High levels of Fe and Cd, in comparison to other Antarctic areas, appear to be related to the terrigenous materials transported by the local streams. Accumulation indexes suggested that kidney tissue from L. elliptica could be an adequate material for biomonitoring pollution with Cd, Zn and probably also Pb. In general, relationships between size and metal contents reported by other authors were not verified, suggesting that this issue should be revised.

  2. Exploring Regulation Genes Involved in the Expression of L-Amino Acid Oxidase in Pseudoalteromonas sp. Rf-1

    PubMed Central

    Wang, Ju; Lin, Jianxun; Zhao, Minyan

    2015-01-01

    Bacterial L-amino acid oxidase (LAAO) is believed to play important biological and ecological roles in marine niches, thus attracting increasing attention to understand the regulation mechanisms underlying its production. In this study, we investigated genes involved in LAAO production in marine bacterium Pseudoalteromonas sp. Rf-1 using transposon mutagenesis. Of more than 4,000 mutants screened, 15 mutants showed significant changes in LAAO activity. Desired transposon insertion was confirmed in 12 mutants, in which disrupted genes and corresponding functionswere identified. Analysis of LAAO activity and lao gene expression revealed that GntR family transcriptional regulator, methylase, non-ribosomal peptide synthetase, TonB-dependent heme-receptor family, Na+/H+ antiporter and related arsenite permease, N-acetyltransferase GCN5, Ketol-acid reductoisomerase and SAM-dependent methytransferase, and their coding genes may be involved in either upregulation or downregulation pathway at transcriptional, posttranscriptional, translational and/or posttranslational level. The nhaD and sdmT genes were separately complemented into the corresponding mutants with abolished LAAO-activity. The complementation of either gene can restore LAAO activity and lao gene expression, demonstrating their regulatory role in LAAO biosynthesis. This study provides, for the first time, insights into the molecular mechanisms regulating LAAO production in Pseudoalteromonas sp. Rf-1, which is important to better understand biological and ecological roles of LAAO. PMID:25815733

  3. Contribution of seasonal sub-Antarctic surface water variability to millennial-scale changes in atmospheric CO2 over the last deglaciation and Marine Isotope Stage 3

    NASA Astrophysics Data System (ADS)

    Gottschalk, Julia; Skinner, Luke C.; Waelbroeck, Claire

    2015-02-01

    The Southern Ocean is thought to have played a key role in past atmospheric carbon dioxide (CO2,atm) changes. Three main factors are understood to control the Southern Ocean's influence on CO2,atm, via their impact on surface ocean pCO2 and therefore regional ocean-atmosphere CO2 fluxes: 1) the efficiency of air-sea gas exchange, which may be attenuated by seasonal- or annual sea-ice coverage or the development of a shallow pycnocline; 2) the supply of CO2-rich water masses from the sub-surface and the deep ocean, which is associated with turbulent mixing and surface buoyancy- and/or wind forcing; and 3) biological carbon fixation, which depends on nutrient availability and is therefore influenced by dust deposition and/or upwelling. In order to investigate the possible contributions of these processes to millennial-scale CO2,atm variations during the last glacial and deglacial periods, we make use of planktonic foraminifer census counts and stable oxygen- and carbon isotope measurements in the planktonic foraminifera Globigerina bulloides and Neogloboquadrina pachyderma (sinistral) from marine sediment core MD07-3076Q in the sub-Antarctic Atlantic. These data are interpreted on the basis of a comparison of core-top and modern seawater isotope data, which permits an assessment of the seasonal biases and geochemical controls on the stable isotopic compositions of G. bulloides and N. pachyderma (s.). Based on a comparison of our down-core results with similar data from the Southeast Atlantic (Cape Basin) we infer past basin-wide changes in the surface hydrography of the sub-Antarctic Atlantic. We find that millennial-scale rises in CO2,atm over the last 70 ka are consistently linked with evidence for increased spring upwelling, and enhanced summer air-sea exchange in the sub-Antarctic Atlantic. Parallel evidence for increased summer export production would suggest that seasonal changes in upwelling and air-sea exchange exerted a dominant influence on surface pCO2 in

  4. Exopolysaccharides Play a Role in the Swarming of the Benthic Bacterium Pseudoalteromonas sp. SM9913

    PubMed Central

    Liu, Ang; Mi, Zi-Hao; Zheng, Xiao-Yu; Yu, Yang; Su, Hai-Nan; Chen, Xiu-Lan; Xie, Bin-Bin; Zhou, Bai-Cheng; Zhang, Yu-Zhong; Qin, Qi-Long

    2016-01-01

    Most marine bacteria secrete exopolysaccharide (EPS), which is important for bacterial survival in the marine environment. However, it is still unclear whether the self-secreted EPS is involved in marine bacterial motility. Here we studied the role of EPS in the lateral flagella-driven swarming motility of benthic bacterium Pseudoalteromonas sp. SM9913 (SM9913) by a comparison of wild SM9913 and ΔepsT, an EPS synthesis defective mutant. Reduction of EPS production in ΔepsT did not affect the growth rate or the swimming motility, but significantly decreased the swarming motility on a swarming plate, suggesting that the EPS may play a role in SM9913 swarming. However, the expression and assembly of lateral flagella in ΔepsT were not affected. Instead, ΔepsT had a different swarming behavior from wild SM9913. The swarming of ΔepsT did not have an obvious rapid swarming period, and its rate became much lower than that of wild SM9913 after 35 h incubation. An addition of surfactin or SM9913 EPS on the surface of the swarming plate could rescue the swarming level. These results indicate that the self-secreted EPS is required for the swarming of SM9913. This study widens our understanding of the function of the EPS of benthic bacteria. PMID:27092127

  5. Antarctic Ice Sheet response to a long warm interval across Marine Isotope Stage 31: A cross-latitudinal study of iceberg-rafted debris

    NASA Astrophysics Data System (ADS)

    Teitler, Lora; Florindo, Fabio; Warnke, Detlef A.; Filippelli, Gabriel M.; Kupp, Gary; Taylor, Brian

    2015-01-01

    Constraining the nature of Antarctic Ice Sheet (AIS) response to major past climate changes may provide a window onto future ice response and rates of sea level rise. One approach to tracking AIS dynamics, and differentiating whole system versus potentially heterogeneous ice sheet sector changes, is to integrate multiple climate proxies for a specific time slice across widely distributed locations. This study presents new iceberg-rafted debris (IRD) data across the interval that includes Marine Isotope Stage 31 (MIS 31: 1.081-1.062 Ma, a span of ∼19 kyr; Lisiecki and Raymo, 2005), which lies on the cusp of the mid-Brunhes climate transition (as glacial cycles shifted from ∼41,000 yr to ∼100,000 yr duration). Two sites are studied-distal Ocean Drilling Program (ODP) Leg 177 Site 1090 (Site 1090) in the eastern subantarctic sector of the South Atlantic Ocean, and proximal ODP Leg 188 Site 1165 (Site 1165), near Prydz Bay, in the Indian Ocean sector of the Antarctic margin. At each of these sites, MIS 31 is marked by the presence of the Jaramillo Subchron (0.988-1.072 Ma; Lourens et al., 2004) which provides a time-marker to correlate these two sites with relative precision. At both sites, records of multiple climate proxies are available to aid in interpretation. The presence of IRD in sediments from our study areas, which include garnets indicating a likely East Antarctic Ice Sheet (EAIS) origin, supports the conclusion that although the EAIS apparently withdrew significantly over MIS 31 in the Prydz Bay region and other sectors, some sectors of the EAIS must still have maintained marine margins capable of launching icebergs even through the warmest intervals. Thus, the EAIS did not respond in complete synchrony even to major climate changes such as MIS 31. Further, the record at Site 1090 (supported by records from other subantarctic locations) indicates that the glacial MIS 32 should be reduced to no more than a stadial, and the warm interval of Antarctic

  6. Diversity of Thiosulfate-Oxidizing Bacteria from Marine Sediments and Hydrothermal Vents†

    PubMed Central

    Teske, A.; Brinkhoff, T.; Muyzer, G.; Moser, D. P.; Rethmeier, J.; Jannasch, H. W.

    2000-01-01

    Species diversity, phylogenetic affiliations, and environmental occurrence patterns of thiosulfate-oxidizing marine bacteria were investigated by using new isolates from serially diluted continental slope and deep-sea abyssal plain sediments collected off the coast of New England and strains cultured previously from Galapagos hydrothermal vent samples. The most frequently obtained new isolates, mostly from 103- and 104-fold dilutions of the continental slope sediment, oxidized thiosulfate to sulfate and fell into a distinct phylogenetic cluster of marine alpha-Proteobacteria. Phylogenetically and physiologically, these sediment strains resembled the sulfate-producing thiosulfate oxidizers from the Galapagos hydrothermal vents while showing habitat-related differences in growth temperature, rate and extent of thiosulfate utilization, and carbon substrate patterns. The abyssal deep-sea sediments yielded predominantly base-producing thiosulfate-oxidizing isolates related to Antarctic marine Psychroflexus species and other cold-water marine strains of the Cytophaga-Flavobacterium-Bacteroides phylum, in addition to gamma-proteobacterial isolates of the genera Pseudoalteromonas and Halomonas-Deleya. Bacterial thiosulfate oxidation is found in a wide phylogenetic spectrum of Flavobacteria and Proteobacteria. PMID:10919760

  7. Metalloid reducing bacteria isolated from deep ocean hydrothermal vents of the Juan de Fuca Ridge, Pseudoalteromonas telluritireducens sp. nov. and Pseudoalteromonas spiralis sp. nov.

    PubMed

    Rathgeber, Christopher; Yurkova, Natalia; Stackebrandt, Erko; Schumann, Peter; Humphrey, Elaine; Beatty, J Thomas; Yurkov, Vladimir

    2006-11-01

    Five strains of Gram-negative, rod, curved rod and spiral-shaped bacteria were isolated from the vicinity of deep ocean hydrothermal vents along the Main Endeavour Segment of the Juan de Fuca Ridge in the Pacific Ocean. All strains showed remarkable resistance to high levels of toxic metalloid oxyanions, and were capable of reducing the oxyanions tellurite and selenite to their less toxic elemental forms. Phylogenetic analysis of four strains identified these isolates as close relatives of the genus Pseudoalteromonas within the class Gammaproteobacteria. Pseudoalteromonas agarivorans was the closest relative of strains Te-1-1 and Se-1-2-redT, with, respectively, 99.5 and 99.8% 16S rDNA sequence similarity. Strain Te-2-2T was most closely related to Pseudoalteromonas paragorgicola, with 99.8% 16S rDNA sequence similarity. The DNA G+C base composition was 39.6 to 41.8 mol%, in agreement with other members of the genus Pseudoalteromonas. However, the isolates showed important morphological and physiological differences from previously described species of this genus, with one group forming rod-shaped bacteria typical of Pseudoalteromonas and the other forming vibrioid- to spiral-shaped cells. Based on these differences, and on phylogenetic data, we propose the creation of the new species Pseudoalteromonas telluritireducens sp. nov., with strain Se-1-2-redT (DSMZ = 16098T = VKM B-2382T) as the type strain, and Pseudoalteromonas spiralis sp. nov., with strain Te-2-2T (DSMZ = 16099T = VKM B-2383T) as the type strain. PMID:17066332

  8. Structural investigation and biological activity of the lipooligosaccharide from the psychrophilic bacterium Pseudoalteromonas haloplanktis TAB 23.

    PubMed

    Carillo, Sara; Pieretti, Giuseppina; Parrilli, Ermenegilda; Tutino, Maria L; Gemma, Sabrina; Molteni, Monica; Lanzetta, Rosa; Parrilli, Michelangelo; Corsaro, Maria M

    2011-06-14

    Pseudoalteromonas haloplanktis TAB 23 is a Gram-negative psychrophilic bacterium isolated from the Antarctic coastal sea. To survive in these conditions psychrophilic bacteria have evolved typical membrane lipids and "antifreeze" proteins to protect the inner side of the microorganism. As for Gram-negative bacteria, the outer membrane is mainly constituted by lipopoly- or lipooligosaccharides (LPS or LOS, respectively), which lean towards the external environment. Despite this, very little is known about the peculiarity of LPS from Gram-negative psychrophilic bacteria and what their role is in adaptation to cold temperature. Here we report the complete structure of the LOS from P. haloplanktis TAB 23. The lipid A was characterized by MALDI-TOF MS analysis and was tested in vitro showing a significant inhibitory effect on the LPS-induced pro-inflammatory cytokine production when added in culture with LPS from Escherichia coli. The product obtained after de-O-acylation of the LPS was analyzed by MALDI-TOF MS revealing the presence of several molecular species, differing in phosphorylation degree and oligosaccharide length. The oligosaccharide portion released after strong alkaline hydrolysis was purified by anion-exchange chromatography-pulsed amperometric detection (HPAEC-PAD) to give three main fractions, characterized by means of 2D NMR spectroscopy, which showed a very short highly phosphorylated saccharidic chain with the following general structure. α-Hepp3R,6R,4R'-(1→5)-α-Kdop4P-(2→6)-β-GlcpN4R-(1→6)-α-GlcpN1P (R=-H(2)PO(3) or -H; R'=α-Galp-(1→4)-β-Galp-(1→ or H-).

  9. Filamentous phages prevalent in Pseudoalteromonas spp. confer properties advantageous to host survival in Arctic sea ice.

    PubMed

    Yu, Zi-Chao; Chen, Xiu-Lan; Shen, Qing-Tao; Zhao, Dian-Li; Tang, Bai-Lu; Su, Hai-Nan; Wu, Zhao-Yu; Qin, Qi-Long; Xie, Bin-Bin; Zhang, Xi-Ying; Yu, Yong; Zhou, Bai-Cheng; Chen, Bo; Zhang, Yu-Zhong

    2015-03-17

    Sea ice is one of the most frigid environments for marine microbes. In contrast to other ocean ecosystems, microbes in permanent sea ice are space confined and subject to many extreme conditions, which change on a seasonal basis. How these microbial communities are regulated to survive the extreme sea ice environment is largely unknown. Here, we show that filamentous phages regulate the host bacterial community to improve survival of the host in permanent Arctic sea ice. We isolated a filamentous phage, f327, from an Arctic sea ice Pseudoalteromonas strain, and we demonstrated that this type of phage is widely distributed in Arctic sea ice. Growth experiments and transcriptome analysis indicated that this phage decreases the host growth rate, cell density and tolerance to NaCl and H2O2, but enhances its motility and chemotaxis. Our results suggest that the presence of the filamentous phage may be beneficial for survival of the host community in sea ice in winter, which is characterized by polar night, nutrient deficiency and high salinity, and that the filamentous phage may help avoid over blooming of the host in sea ice in summer, which is characterized by polar day, rich nutrient availability, intense radiation and high concentration of H2O2. Thus, while they cannot kill the host cells by lysing them, filamentous phages confer properties advantageous to host survival in the Arctic sea ice environment. Our study provides a foremost insight into the ecological role of filamentous phages in the Arctic sea ice ecosystem.

  10. Filamentous phages prevalent in Pseudoalteromonas spp. confer properties advantageous to host survival in Arctic sea ice

    PubMed Central

    Yu, Zi-Chao; Chen, Xiu-Lan; Shen, Qing-Tao; Zhao, Dian-Li; Tang, Bai-Lu; Su, Hai-Nan; Wu, Zhao-Yu; Qin, Qi-Long; Xie, Bin-Bin; Zhang, Xi-Ying; Yu, Yong; Zhou, Bai-Cheng; Chen, Bo; Zhang, Yu-Zhong

    2015-01-01

    Sea ice is one of the most frigid environments for marine microbes. In contrast to other ocean ecosystems, microbes in permanent sea ice are space confined and subject to many extreme conditions, which change on a seasonal basis. How these microbial communities are regulated to survive the extreme sea ice environment is largely unknown. Here, we show that filamentous phages regulate the host bacterial community to improve survival of the host in permanent Arctic sea ice. We isolated a filamentous phage, f327, from an Arctic sea ice Pseudoalteromonas strain, and we demonstrated that this type of phage is widely distributed in Arctic sea ice. Growth experiments and transcriptome analysis indicated that this phage decreases the host growth rate, cell density and tolerance to NaCl and H2O2, but enhances its motility and chemotaxis. Our results suggest that the presence of the filamentous phage may be beneficial for survival of the host community in sea ice in winter, which is characterized by polar night, nutrient deficiency and high salinity, and that the filamentous phage may help avoid over blooming of the host in sea ice in summer, which is characterized by polar day, rich nutrient availability, intense radiation and high concentration of H2O2. Thus, while they cannot kill the host cells by lysing them, filamentous phages confer properties advantageous to host survival in the Arctic sea ice environment. Our study provides a foremost insight into the ecological role of filamentous phages in the Arctic sea ice ecosystem. PMID:25303713

  11. Environmental contamination in Antarctic ecosystems.

    PubMed

    Bargagli, R

    2008-08-01

    Although the remote continent of Antarctica is perceived as the symbol of the last great wilderness, the human presence in the Southern Ocean and the continent began in the early 1900s for hunting, fishing and exploration, and many invasive plant and animal species have been deliberately introduced in several sub-Antarctic islands. Over the last 50 years, the development of research and tourism have locally affected terrestrial and marine coastal ecosystems through fuel combustion (for transportation and energy production), accidental oil spills, waste incineration and sewage. Although natural "barriers" such as oceanic and atmospheric circulation protect Antarctica from lower latitude water and air masses, available data on concentrations of metals, pesticides and other persistent pollutants in air, snow, mosses, lichens and marine organisms show that most persistent contaminants in the Antarctic environment are transported from other continents in the Southern Hemisphere. At present, levels of most contaminants in Antarctic organisms are lower than those in related species from other remote regions, except for the natural accumulation of Cd and Hg in several marine organisms and especially in albatrosses and petrels. The concentrations of organic pollutants in the eggs of an opportunistic top predator such as the south polar skua are close to those that may cause adverse health effects. Population growth and industrial development in several countries of the Southern Hemisphere are changing the global pattern of persistent anthropogenic contaminants and new classes of chemicals have already been detected in the Antarctic environment. Although the Protocol on Environmental Protection to the Antarctic Treaty provides strict guidelines for the protection of the Antarctic environment and establishes obligations for all human activity in the continent and the Southern Ocean, global warming, population growth and industrial development in countries of the Southern

  12. Environmental contamination in Antarctic ecosystems.

    PubMed

    Bargagli, R

    2008-08-01

    Although the remote continent of Antarctica is perceived as the symbol of the last great wilderness, the human presence in the Southern Ocean and the continent began in the early 1900s for hunting, fishing and exploration, and many invasive plant and animal species have been deliberately introduced in several sub-Antarctic islands. Over the last 50 years, the development of research and tourism have locally affected terrestrial and marine coastal ecosystems through fuel combustion (for transportation and energy production), accidental oil spills, waste incineration and sewage. Although natural "barriers" such as oceanic and atmospheric circulation protect Antarctica from lower latitude water and air masses, available data on concentrations of metals, pesticides and other persistent pollutants in air, snow, mosses, lichens and marine organisms show that most persistent contaminants in the Antarctic environment are transported from other continents in the Southern Hemisphere. At present, levels of most contaminants in Antarctic organisms are lower than those in related species from other remote regions, except for the natural accumulation of Cd and Hg in several marine organisms and especially in albatrosses and petrels. The concentrations of organic pollutants in the eggs of an opportunistic top predator such as the south polar skua are close to those that may cause adverse health effects. Population growth and industrial development in several countries of the Southern Hemisphere are changing the global pattern of persistent anthropogenic contaminants and new classes of chemicals have already been detected in the Antarctic environment. Although the Protocol on Environmental Protection to the Antarctic Treaty provides strict guidelines for the protection of the Antarctic environment and establishes obligations for all human activity in the continent and the Southern Ocean, global warming, population growth and industrial development in countries of the Southern

  13. Antarctic Fishes.

    ERIC Educational Resources Information Center

    Eastman, Joseph T.; DeVries, Arthur L.

    1986-01-01

    Explains the adaptations to Antarctic waters that Notothenioidei, a group of advanced bony fishes, have exhibited. Discusses the fishes' mechanisms of production of antifreeze properties and their capacities for neutral buoyancy in water. (ML)

  14. Antarctic Entomology.

    PubMed

    Chown, Steven L; Convey, Peter

    2016-01-01

    The Antarctic region comprises the continent, the Maritime Antarctic, the sub-Antarctic islands, and the southern cold temperate islands. Continental Antarctica is devoid of insects, but elsewhere diversity varies from 2 to more than 200 species, of which flies and beetles constitute the majority. Much is known about the drivers of this diversity at local and regional scales; current climate and glacial history play important roles. Investigations of responses to low temperatures, dry conditions, and varying salinity have spanned the ecological to the genomic, revealing new insights into how insects respond to stressful conditions. Biological invasions are common across much of the region and are expected to increase as climates become warmer. The drivers of invasion are reasonably well understood, although less is known about the impacts of invasion. Antarctic entomology has advanced considerably over the past 50 years, but key areas, such as interspecific interactions, remain underexplored.

  15. Triggers of the HSP70 stress response: environmental responses and laboratory manipulation in an Antarctic marine invertebrate (Nacella concinna)

    PubMed Central

    Peck, Lloyd S.

    2009-01-01

    The Antarctic limpet, Nacella concinna, exhibits the classical heat shock response, with up-regulation of duplicated forms of the inducible heat shock protein 70 (HSP70) gene in response to experimental manipulation of seawater temperatures. However, this response only occurs in the laboratory at temperatures well in excess of any experienced in the field. Subsequent environmental sampling of inter-tidal animals also showed up-regulation of these genes, but at temperature thresholds much lower than those required to elicit a response in the laboratory. It was hypothesised that this was a reflection of the complexity of the stresses encountered in the inter-tidal region. Here, we describe a further series of experiments comprising both laboratory manipulation and environmental sampling of N. concinna. We investigate the expression of HSP70 gene family members (HSP70A, HSP70B, GRP78 and HSC70) in response to a further suite of environmental stressors: seasonal and experimental cold, freshwater, desiccation, chronic heat and periodic emersion. Lowered temperatures (−1.9°C and −1.6°C), generally produced a down-regulation of all HSP70 family members, with some up-regulation of HSC70 when emerging from the winter period and increasing sea temperatures. There was no significant response to freshwater immersion. In response to acute and chronic heat treatments plus simulated tidal cycles, the data showed a clear pattern. HSP70A showed a strong but very short-term response to heat whilst the duplicated HSP70B also showed heat to be a trigger, but had a more sustained response to complex stresses. GRP78 expression indicates that it was acting as a generalised stress response under the experimental conditions described here. HSC70 was the major chaperone invoked in response to long-term stresses of varying types. These results provide intriguing clues not only to the complexity of HSP70 gene expression in response to environmental change but also insights into the

  16. Multibranch Antarctic Seismic Data Library facilitates research

    NASA Astrophysics Data System (ADS)

    Cooper, Alan K.

    In 1991, investigators from 11 nations involved in Antarctic multichannel seismic (MCS) reflection research sought a way to keep the Antarctic Treaty's promise of open access to data, and in the process to encourage Earth-science research using seismic data. The Antarctic Seismic Data Library System for Cooperative Research (SDLS) was the solution, and is now a recommendation of the Antarctic Treaty Consultative Parties (ATCP). Today—at 12 branches spanning the world—researchers can access over 68,000 km of marine MCS data to use for cooperative research.More than 150,000 km of MCS data have been accumulated since 1976 by 13 countries on nearly 70 cruises. The majority of data now in the library cover the Ross Sea, Wilkes Land, and Prydz Bay sectors of the Antarctic margin, with smaller amounts from the Weddell Sea and the Antarctic Peninsula.

  17. Draft Genome Sequences of Two Pseudoalteromonas Strains Isolated from Roots and Leaf Blades of the Seagrass Zostera marina.

    PubMed

    Alexiev, Alexandra; Krusor, Megan L; Jospin, Guillaume; Lang, Jenna M; Eisen, Jonathan A; Coil, David A

    2016-01-01

    Here, we present the draft genome sequences for Pseudoalteromonas sp. strain UCD-33C and Pseudoalteromonas lipolytica UCD-48B. Pseudoalteromonas sp. UCD-33C was isolated from Zostera marina roots and P. lipolytica UCD-48B from Z. marina leaf blades, both collected in Woods Hole, MA. These assemblies contain 4,479,285 bp and 4,592,435 bp, respectively. PMID:26893412

  18. Development of a Model to Assess Masking Potential for Marine Mammals by the Use of Air Guns in Antarctic Waters.

    PubMed

    Wittekind, Dietrich; Tougaard, Jakob; Stilz, Peter; Dähne, Michael; Clark, Christopher W; Lucke, Klaus; von Benda-Beckmann, Sander; Ainslie, Michael A; Siebert, Ursula

    2016-01-01

    We estimated the long-range effects of air gun array noise on marine mammal communication ranges in the Southern Ocean. Air gun impulses are subject to significant distortion during propagation, potentially resulting in a quasi-continuous sound. Propagation modeling to estimate the received waveform was conducted. A leaky integrator was used as a hearing model to assess communication masking in three species due to intermittent/continuous air gun sounds. Air gun noise is most probably changing from impulse to continuous noise between 1,000 and 2,000 km from the source, leading to a reduced communication range for, e.g., blue and fin whales up to 2,000 km from the source.

  19. Development of a Model to Assess Masking Potential for Marine Mammals by the Use of Air Guns in Antarctic Waters.

    PubMed

    Wittekind, Dietrich; Tougaard, Jakob; Stilz, Peter; Dähne, Michael; Clark, Christopher W; Lucke, Klaus; von Benda-Beckmann, Sander; Ainslie, Michael A; Siebert, Ursula

    2016-01-01

    We estimated the long-range effects of air gun array noise on marine mammal communication ranges in the Southern Ocean. Air gun impulses are subject to significant distortion during propagation, potentially resulting in a quasi-continuous sound. Propagation modeling to estimate the received waveform was conducted. A leaky integrator was used as a hearing model to assess communication masking in three species due to intermittent/continuous air gun sounds. Air gun noise is most probably changing from impulse to continuous noise between 1,000 and 2,000 km from the source, leading to a reduced communication range for, e.g., blue and fin whales up to 2,000 km from the source. PMID:26611093

  20. Anti-biofilm activity of pseudoalteromonas haloplanktis tac125 against staphylococcus epidermidis biofilm: Evidence of a signal molecule involvement?

    PubMed

    Parrilli, E; Papa, R; Carillo, S; Tilotta, M; Casillo, A; Sannino, F; Cellini, A; Artini, M; Selan, L; Corsaro, M M; Tutino, M L

    2015-03-01

    Staphylococcus epidermidis is recognized as cause of biofilm-associated infections and interest in the development of new approaches for S. epidermidis biofilm treatment has increased. In a previous paper we reported that the supernatant of Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 presents an anti-biofilm activity against S. epidermidis and preliminary physico-chemical characterization of the supernatant suggested that this activity is due to a polysaccharide. In this work we further investigated the chemical nature of the anti-biofilm P. haloplanktis TAC125 molecule. The production of the molecule was evaluated in different conditions, and reported data demonstrated that it is produced in all P. haloplanktis TAC125 biofilm growth stages, also in minimal medium and at different temperatures. By using a surface coating assay, the surfactant nature of the anti-biofilm compound was excluded. Moreover, a purification procedure was set up and the analysis of an enriched fraction demonstrated that the anti-biofilm activity is not due to a polysaccharide molecule but that it is due to small hydrophobic molecules that likely work as signal. The enriched fraction was also used to evaluate the effect on S. epidermidis biofilm formation in dynamic condition by BioFlux system.

  1. Anti-biofilm activity of pseudoalteromonas haloplanktis tac125 against staphylococcus epidermidis biofilm: Evidence of a signal molecule involvement?

    PubMed

    Parrilli, E; Papa, R; Carillo, S; Tilotta, M; Casillo, A; Sannino, F; Cellini, A; Artini, M; Selan, L; Corsaro, M M; Tutino, M L

    2015-03-01

    Staphylococcus epidermidis is recognized as cause of biofilm-associated infections and interest in the development of new approaches for S. epidermidis biofilm treatment has increased. In a previous paper we reported that the supernatant of Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 presents an anti-biofilm activity against S. epidermidis and preliminary physico-chemical characterization of the supernatant suggested that this activity is due to a polysaccharide. In this work we further investigated the chemical nature of the anti-biofilm P. haloplanktis TAC125 molecule. The production of the molecule was evaluated in different conditions, and reported data demonstrated that it is produced in all P. haloplanktis TAC125 biofilm growth stages, also in minimal medium and at different temperatures. By using a surface coating assay, the surfactant nature of the anti-biofilm compound was excluded. Moreover, a purification procedure was set up and the analysis of an enriched fraction demonstrated that the anti-biofilm activity is not due to a polysaccharide molecule but that it is due to small hydrophobic molecules that likely work as signal. The enriched fraction was also used to evaluate the effect on S. epidermidis biofilm formation in dynamic condition by BioFlux system. PMID:25816412

  2. 76 FR 48182 - Notice of Permit Application Received Under the Antarctic Conservation Act of 1978

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-08

    ... Bay, King George Island by the Antarctic Marine Living Resources Program, Southwest Fisheries Science... From the Federal Register Online via the Government Publishing Office NATIONAL SCIENCE FOUNDATION... Science Foundation. ACTION: Notice of Permit Applications Received Under the Antarctic Conservation...

  3. The changing form of Antarctic biodiversity.

    PubMed

    Chown, Steven L; Clarke, Andrew; Fraser, Ceridwen I; Cary, S Craig; Moon, Katherine L; McGeoch, Melodie A

    2015-06-25

    Antarctic biodiversity is much more extensive, ecologically diverse and biogeographically structured than previously thought. Understanding of how this diversity is distributed in marine and terrestrial systems, the mechanisms underlying its spatial variation, and the significance of the microbiota is growing rapidly. Broadly recognizable drivers of diversity variation include energy availability and historical refugia. The impacts of local human activities and global environmental change nonetheless pose challenges to the current and future understanding of Antarctic biodiversity. Life in the Antarctic and the Southern Ocean is surprisingly rich, and as much at risk from environmental change as it is elsewhere. PMID:26108852

  4. Preliminary results of the Deep Freeze 85 marine geologic and geophysical survey of the Antarctic Peninsula continental shelf and South Orkney Plateau

    SciTech Connect

    Anderson, J.B.; Bartek, L.; Griffith, T.; Herron, M.; Kennedy, D.; Singer, J.; Smith, M.

    1985-01-01

    Seismic profiles from the South Orkney Plateau show a relatively thick (>0.7 seconds), laminated sequence resting on block faulted acoustic basement and deformed strata. This represents the rifting of the plateau from the Antarctic Peninsula and subsequent pelagic sedimentation. A glacial erosional surface and associated glacial trough were identified on the platform, and possible basal till collected in at least one piston core. Seismic lines from the continental shelf north of the South Shetland Plateau show gently folded reflectors that have been truncated by a widespread erosional unconformity and probable moraines situated near the shelf edge. A line across the Bransfield Strait, a modern back-arc basin, shows the structural features of the basin and thick (>1.0 second) laminated sediments within the center of the basin. One of several deep channels which dissect the shelf was surveyed, but the origin of these features remains uncertain. Geophysical data and piston cores were acquired in several of the bays and fjords of the peninsula region. This is the first detailed survey of Antarctic bays and fjords. The preliminary results show striking differences in sedimentation between Antarctic fjords and those of Arctic and Subarctic regions, the most important difference being the limited role of meltwater runoff in the supply of sediment to Antarctic fjords.

  5. Isolation and characterization of Campylobacter spp. from Antarctic fur seals (Arctocephalus gazella) at Deception Island, Antarctica.

    PubMed

    García-Peña, F J; Pérez-Boto, D; Jiménez, C; San Miguel, E; Echeita, A; Rengifo-Herrera, C; García-Párraga, D; Ortega-Mora, L M; Pedraza-Díaz, S

    2010-09-01

    The presence of Campylobacter spp. was investigated in 41 Antarctic fur seals (Arctocephalus gazella) and 9 Weddell seals (Leptonychotes weddellii) at Deception Island, Antarctica. Infections were encountered in six Antarctic fur seals. The isolates, the first reported from marine mammals in the Antarctic region, were identified as Campylobacter insulaenigrae and Campylobacter lari.

  6. Isolation and Characterization of Campylobacter spp. from Antarctic Fur Seals (Arctocephalus gazella) at Deception Island, Antarctica▿

    PubMed Central

    García-Peña, F. J.; Pérez-Boto, D.; Jiménez, C.; San Miguel, E.; Echeita, A.; Rengifo-Herrera, C.; García-Párraga, D.; Ortega-Mora, L. M.; Pedraza-Díaz, S.

    2010-01-01

    The presence of Campylobacter spp. was investigated in 41 Antarctic fur seals (Arctocephalus gazella) and 9 Weddell seals (Leptonychotes weddellii) at Deception Island, Antarctica. Infections were encountered in six Antarctic fur seals. The isolates, the first reported from marine mammals in the Antarctic region, were identified as Campylobacter insulaenigrae and Campylobacter lari. PMID:20639356

  7. Transcriptome of the Antarctic brooding gastropod mollusc Margarella antarctica.

    PubMed

    Clark, Melody S; Thorne, Michael A S

    2015-12-01

    454 RNA-Seq transcriptome data were generated from foot tissue of the Antarctic brooding gastropod mollusc Margarella antarctica. A total of 6195 contigs were assembled de novo, providing a useful resource for researchers with an interest in Antarctic marine species, phylogenetics and mollusc biology, especially shell production.

  8. Complete genome sequence of Pseudoalteromonas rubra SCSIO 6842, harboring a putative conjugative plasmid pMBL6842.

    PubMed

    Li, Baiyuan; Wang, Pengxia; Zeng, Zhenshun; Cai, Xingsheng; Wang, Guanghua; Wang, Xiaoxue

    2016-04-20

    Pseudoalteromonas is a genus of Gram-negative and is ubiquitously distributed in the ocean. Many Pseudoalteromonas species are capable of producing pigments, which can serve as an alternative source to replace synthetic pigments used in the food industry. Prodigiosins belong to a family of secondary metabolite characterized by a common pyrrolyl pyrromethane skeleton, and have been successfully applied to yogurt, milk and carbonated drinks as substitutes for synthetic additives. The strain Pseudoalteromonas rubra SCSIO 6842 can produce cycloprodigiosin and harbors a conjugative plasmid. Here we report the complete genome of P. rubra SCSIO 6842 for a better understanding of the molecular basis of cycloprodigiosin production and regulation. PMID:26970053

  9. Complete genome sequence of Pseudoalteromonas rubra SCSIO 6842, harboring a putative conjugative plasmid pMBL6842.

    PubMed

    Li, Baiyuan; Wang, Pengxia; Zeng, Zhenshun; Cai, Xingsheng; Wang, Guanghua; Wang, Xiaoxue

    2016-04-20

    Pseudoalteromonas is a genus of Gram-negative and is ubiquitously distributed in the ocean. Many Pseudoalteromonas species are capable of producing pigments, which can serve as an alternative source to replace synthetic pigments used in the food industry. Prodigiosins belong to a family of secondary metabolite characterized by a common pyrrolyl pyrromethane skeleton, and have been successfully applied to yogurt, milk and carbonated drinks as substitutes for synthetic additives. The strain Pseudoalteromonas rubra SCSIO 6842 can produce cycloprodigiosin and harbors a conjugative plasmid. Here we report the complete genome of P. rubra SCSIO 6842 for a better understanding of the molecular basis of cycloprodigiosin production and regulation.

  10. Six Pseudoalteromonas Strains Isolated from Surface Waters of Kabeltonne, Offshore Helgoland, North Sea

    PubMed Central

    Wichels, Antje; Sullivan, Matthew B.

    2016-01-01

    Draft genomes are presented for 6 Pseudoalteromonas sp. strains isolated from surface waters at Kabeltonne, Helgoland, a long-term ecological research station in the North Sea. These strains contribute knowledge of the genomic underpinnings of a developing model system to study phage-host dynamics of a particle-associated ocean copiotroph. PMID:26868390

  11. Draft Genome Sequence of the Moderately Halophilic Bacterium Pseudoalteromonas ruthenica Strain CP76.

    PubMed

    de la Haba, Rafael R; Sánchez-Porro, Cristina; León, María José; Papke, R Thane; Ventosa, Antonio

    2013-05-23

    Pseudoalteromonas ruthenica strain CP76, isolated from a saltern in Spain, is a moderately halophilic bacterium belonging to the Gammaproteobacteria. Here we report the draft genome sequence, which consists of a 4.0-Mb chromosome, of this strain, which is able to produce the extracellular enzyme haloprotease CPI.

  12. Antarctic science

    NASA Astrophysics Data System (ADS)

    Summerhayes, Colin

    Once upon a time, dinosaurs roamed Antarctica and swam in its seas. Since then, life evolved as the climate cooled into the ice ages. Life will no doubt continue to evolve there as the globe now warms. But nowadays, humans are having a profound and direct effect on life in Antarctica, the sub-Antarctic islands, and the surrounding Southern Ocean, which are being invaded by a wide range of alien species including microbes, algae, fungi, bryophytes, land plants, invertebrates, fish, birds, and mammals.

  13. Antarctic Genomics

    PubMed Central

    Clarke, Andrew; Cockell, Charles S.; Convey, Peter; Detrich III, H. William; Fraser, Keiron P. P.; Johnston, Ian A.; Methe, Barbara A.; Murray, Alison E.; Peck, Lloyd S.; Römisch, Karin; Rogers, Alex D.

    2004-01-01

    With the development of genomic science and its battery of technologies, polar biology stands on the threshold of a revolution, one that will enable the investigation of important questions of unprecedented scope and with extraordinary depth and precision. The exotic organisms of polar ecosystems are ideal candidates for genomic analysis. Through such analyses, it will be possible to learn not only the novel features that enable polar organisms to survive, and indeed thrive, in their extreme environments, but also fundamental biological principles that are common to most, if not all, organisms. This article aims to review recent developments in Antarctic genomics and to demonstrate the global context of such studies. PMID:18629155

  14. Enhancement of antibiotic activity against multidrug-resistant bacteria by the efflux pump inhibitor 3,4-dibromopyrrole-2,5-dione isolated from a Pseudoalteromonas sp.

    PubMed

    Whalen, Kristen E; Poulson-Ellestad, Kelsey L; Deering, Robert W; Rowley, David C; Mincer, Tracy J

    2015-03-27

    Members of the resistance nodulation cell division (RND) of efflux pumps play essential roles in multidrug resistance (MDR) in Gram-negative bacteria. Here, we describe the search for new small molecules from marine microbial extracts to block efflux and thus restore antibiotic susceptibility in MDR bacterial strains. We report the isolation of 3,4-dibromopyrrole-2,5-dione (1), an inhibitor of RND transporters, from Enterobacteriaceae and Pseudomonas aeruginosa, from the marine bacterium Pseudoalteromonas piscicida. 3,4-Dibromopyrrole-2,5-dione decreased the minimum inhibitory concentrations (MICs) of two fluoroquinolones, an aminoglycoside, a macrolide, a beta-lactam, tetracycline, and chloramphenicol between 2- and 16-fold in strains overexpressing three archetype RND transporters (AcrAB-TolC, MexAB-OprM, and MexXY-OprM). 3,4-Dibromopyrrole-2,5-dione also increased the intracellular accumulation of Hoechst 33342 in wild-type but not in transporter-deficient strains and prevented H33342 efflux (IC50 = 0.79 μg/mL or 3 μM), a hallmark of efflux pump inhibitor (EPI) functionality. A metabolomic survey of 36 Pseudoalteromonas isolates mapped the presence of primarily brominated metabolites only within the P. piscicida phylogenetic clade, where a majority of antibiotic activity was also observed, suggesting a link between halogenation and enhanced secondary metabolite biosynthetic potential. In sum, 3,4-dibromopyrrole-2,5-dione is a potent EPI and deserves further attention as an adjuvant to enhance the effectiveness of existing antibiotics. PMID:25646964

  15. Cryoprotective properties and preliminary characterization of exopolysaccharide (P-Arcpo 15) produced by the Arctic bacterium Pseudoalteromonas elyakovii Arcpo 15.

    PubMed

    Kim, Sung Jin; Kim, Byung-Gee; Park, Ha Ju; Yim, Joung Han

    2016-01-01

    Twenty-two bacterial strains that secrete exopolysaccharides (EPS) were isolated from marine samples obtained from the Chukchi Sea in the Arctic Ocean; of these, seven strains were found to be capable of producing cryoprotective EPS. The ArcPo 15 strain was isolated based on its ability to secrete large amounts of EPS, and was identified as Pseudoalteromonas elyakovii based on 16S rDNA analysis. The EPS, P-ArcPo 15, was purified by protease treatment and gel filtration chromatography. The purified EPS (P-ArcPo 15) had a molecular mass of 1.7 × 10(7) Da, and its infrared spectrum showed absorption bands of hydroxyl and carboxyl groups. The principal sugar components of P-ArcPo 15 were determined to be mannose and galacturonic acid, in the ratio of 3.3:1.0. The cryoprotective properties of P-ArcPo 15 were characterized by an Escherichia coli viability test. In the presence of 0.5% (w/v) EPS, the survival percentage of E. coli cells was as high as 94.19 ± 7.81% over five repeated freeze-thaw cycles. These biochemical characteristics suggest that the EPS P-ArcPo 15 may be useful in the development of cryoprotectants for biotechnological purposes, and we therefore assessed the utility of this novel cryoprotective EPS. PMID:26810617

  16. Cytoplasmic and Periplasmic Proteomic Signatures of Exponentially Growing Cells of the Psychrophilic Bacterium Pseudoalteromonas haloplanktis TAC125 ▿ †

    PubMed Central

    Wilmes, Boris; Kock, Holger; Glagla, Susanne; Albrecht, Dirk; Voigt, Birgit; Markert, Stephanie; Gardebrecht, Antje; Bode, Rüdiger; Danchin, Antoine; Feller, Georges; Hecker, Michael; Schweder, Thomas

    2011-01-01

    The psychrophilic model bacterium Pseudoalteromonas haloplanktis is characterized by remarkably fast growth rates under low-temperature conditions in a range from 5°C to 20°C. In this study the proteome of cellular compartments, the cytoplasm and periplasm, of P. haloplanktis strain TAC125 was analyzed under exponential growth conditions at a permissive temperature of 16°C. By means of two-dimensional protein gel electrophoresis and mass spectrometry, a first inventory of the most abundant cytoplasmic and periplasmic proteins expressed in a peptone-supplemented minimal medium was established. By this approach major enzymes of the amino acid catabolism of this marine bacterium could be functionally deduced. The cytoplasmic proteome showed a predominance of amino acid degradation pathways and tricarboxylic acid (TCA) cycle enzymes but also the protein synthesis machinery. Furthermore, high levels of cold acclimation and oxidative stress proteins could be detected at this moderate growth temperature. The periplasmic proteome was characterized by a significant abundance of transporters, especially of highly expressed putative TonB-dependent receptors. This high capacity for protein synthesis, efficient amino acid utilization, and substrate transport may contribute to the fast growth rates of the copiotrophic bacterium P. haloplanktis in its natural environments. PMID:21183643

  17. Effects of Pseudoalteromonas sp. BC228 on digestive enzyme activity and immune response of juvenile sea cucumber ( Apostichopus japonicus)

    NASA Astrophysics Data System (ADS)

    Ma, Yuexin; Sun, Feixue; Zhang, Congyao; Bao, Pengyun; Cao, Shuqing; Zhang, Meiyan

    2014-12-01

    A marine bacterium, Pseudoalteromonas sp. BC228 was supplemented to feed in a feeding experiment aiming to determine its ability of enhancing the digestive enzyme activity and immune response of juvenile Apostichopus japonicus. Sea cucumber individuals were fed with the diets containing 0 (control), 105, 107 and 109 CFU g-1 diet of BC228 for 45 days. Results showed that intestinal trypsin and lipase activities were significantly enhanced by 107 and 109 CFU g-1 diet of BC228 in comparison with control ( P < 0.01). The phagocytic activity in the coelomocytes of sea cucumber fed the diet supplemented with 107 CFU g-1 diet of BC228 was significantly higher than that of those fed control diet ( P < 0.05). In addition, 105 and 107 CFU g-1 diet of BC228 significantly enhanced lysozyme and phenoloxidase activities in the coelomic fluid of sea cucumber, respectively, in comparison with other diets ( P < 0.01). Sea cucumbers, 10 each diet, were challenged with Vibrio splendidus NB13 after 45 days of feeding. It was found that the cumulative incidence and mortality of sea cucumber fed with BC228 containing diets were lower than those of animals fed control diet. Our findings evidenced that BC228 supplemented in diets improved the digestive enzyme activity of juvenile sea cucumber, stimulated its immune response and enhanced its resistance to the infection of V. splendidus.

  18. Structure and ecological roles of a novel exopolysaccharide from the arctic sea ice bacterium Pseudoalteromonas sp. Strain SM20310.

    PubMed

    Liu, Sheng-Bo; Chen, Xiu-Lan; He, Hai-Lun; Zhang, Xi-Ying; Xie, Bin-Bin; Yu, Yong; Chen, Bo; Zhou, Bai-Cheng; Zhang, Yu-Zhong

    2013-01-01

    The structure and ecological roles of the exopolysaccharides (EPSs) from sea ice microorganisms are poorly studied. Here we show that strain SM20310, with an EPS production of 567 mg liter(-1), was screened from 110 Arctic sea ice isolates and identified as a Pseudoalteromonas strain. The EPS secreted by SM20310 was purified, and its structural characteristics were studied. The predominant repeating unit of this EPS is a highly complicated α-mannan with a molecular mass greater than 2 × 10(6) Da. The backbone of the EPS consists of 2-α-, 6-α-mannosyl residues, in which a considerable part of the 6-α-mannosyl residues are branched at the 2 position with either single t-mannosyl residues or two mannosyl residues. The structure of the described EPS is different from the structures of EPSs secreted by other marine bacteria. Analysis of the ecological roles of the identified EPS showed that the EPS could significantly enhance the high-salinity tolerance of SM20310 and improve the survival of SM20310 after freeze-thaw cycles. These results suggest that the EPS secreted by strain SM20310 enables the strain to adapt to the sea ice environment, which is characterized by low temperature, high salinity, and repeated freeze-thaw cycles. In addition to its functions in strain SM20310, this EPS also significantly improved the tolerance of Escherichia coli to freeze-thaw cycles, suggesting that it may have a universal impact on microorganism cryoprotection.

  19. Microbial mercury methylation in Antarctic sea ice.

    PubMed

    Gionfriddo, Caitlin M; Tate, Michael T; Wick, Ryan R; Schultz, Mark B; Zemla, Adam; Thelen, Michael P; Schofield, Robyn; Krabbenhoft, David P; Holt, Kathryn E; Moreau, John W

    2016-01-01

    Atmospheric deposition of mercury onto sea ice and circumpolar sea water provides mercury for microbial methylation, and contributes to the bioaccumulation of the potent neurotoxin methylmercury in the marine food web. Little is known about the abiotic and biotic controls on microbial mercury methylation in polar marine systems. However, mercury methylation is known to occur alongside photochemical and microbial mercury reduction and subsequent volatilization. Here, we combine mercury speciation measurements of total and methylated mercury with metagenomic analysis of whole-community microbial DNA from Antarctic snow, brine, sea ice and sea water to elucidate potential microbially mediated mercury methylation and volatilization pathways in polar marine environments. Our results identify the marine microaerophilic bacterium Nitrospina as a potential mercury methylator within sea ice. Anaerobic bacteria known to methylate mercury were notably absent from sea-ice metagenomes. We propose that Antarctic sea ice can harbour a microbial source of methylmercury in the Southern Ocean. PMID:27670112

  20. Development of an efficient conjugation-based genetic manipulation system for Pseudoalteromonas.

    PubMed

    Wang, Pengxia; Yu, Zichao; Li, Baiyuan; Cai, Xingsheng; Zeng, Zhenshun; Chen, Xiulan; Wang, Xiaoxue

    2015-01-01

    Pseudoalteromonas is commonly found throughout the world's oceans, and has gained increased attention due to the ecological and biological significance. Although over fifty Pseudoalteromonas genomes have been sequenced with an aim to explore the adaptive strategies in different habitats, in vivo studies are hampered by the lack of effective genetic manipulation systems for most strains in this genus. Here, nine Pseudoalteromonas strains isolated from different habitats were selected and used as representative strains to develop a universal genetic manipulation system. Erythromycin and chloramphenicol resistance were chosen as selection markers based on antibiotics resistance test of the nine strains. A conjugation protocol based on the RP4 conjugative machinery in E. coli WM3064 was developed to overcome current limitations of genetic manipulation in Pseudoalteromonas. Two mobilizable gene expression shuttle vectors (pWD2-oriT and pWD2Ery-oriT) were constructed, and conjugation efficiency of pWD2-oriT from E. coli to the nine Pseudoalteromonas strains ranged from 10(-6) to 10(-3) transconjugants per recipient cells. Two suicide vectors, pK18mobsacB-Cm and pK18mobsacB-Ery (with sacB for counter-selection), were constructed for gene knockout. To verify the feasibility of this system, we selected gene or operon that may lead to phenotypic change once disrupted as targets to facilitate in vivo functional confirmation. Successful deletions of two genes related to prodigiosin biosynthesis (pigMK) in P. rubra DSM 6842, one biofilm related gene (bsmA) in P. sp. SM9913, one gene related to melanin hyperproduction (hmgA) in P. lipolytica SCSIO 04301 and two flagella-related genes (fliF and fliG) in P. sp. SCSIO 11900 were verified, respectively. In addition, complementation of hmgA using shuttle vector pWD2-oriT was rescued the phenotype caused by deletion of chromosomal copy of hmgA in P. lipolytica SCSIO 04301. Taken together, we demonstrate that the vectors and the

  1. Cytotoxic prodigiosin family pigments from Pseudoalteromonas sp. 1020R isolated from the Pacific coast of Japan.

    PubMed

    Wang, Yi; Nakajima, Aya; Hosokawa, Kakushi; Soliev, Azamjon B; Osaka, Issey; Arakawa, Ryuichi; Enomoto, Keiichi

    2012-01-01

    Pseudoalteromonas sp. 1020R, isolated from the Pacific coast of Japan, produces prodigiosin family pigments. Structural analysis indicated that these are prodigiosin (2-methyl-3-pentyl-prodiginine) and three other prodigiosin congeners which differ only in the lengths of the alkyl side chains. These compounds exhibited different extents of cytotoxicity against U937 leukemia cells, and cell death was accompanied by typical features of apoptosis.

  2. Bacteriostatic anti-Vibrio parahaemolyticus activity of Pseudoalteromonas sp. strains DIT09, DIT44 and DIT46 isolated from Southern Chilean intertidal Perumytilus purpuratus.

    PubMed

    Aranda, Carlos P; Valenzuela, Cristian; Barrientos, Javier; Paredes, Javier; Leal, Pablo; Maldonado, Miguel; Godoy, Félix A; Osorio, Carlos G

    2012-06-01

    We characterised the anti-Vibrio parahaemolyticus (anti-V. parahaemolyticus) marine bacteria DIT09, DIT44 and DIT46 isolated from the intertidal mussel Perumytilus purpuratus. The 16S rRNA gene sequences identify a Pseudoalteromonas sp. that form a clade with P. prydzensis and P. mariniglutinosa. The strains produced bacteriostatic anti-V. parahaemolyticus agents during the exponential growth phase, which were also active against V. cholerae and V. anguillarum, but not on other Gram positive and Gram negative bacteria. Bacteriostatic agents could be permeated by analytic ultra-filtration with 3.5 kDa cut-off, partially precipitated with 70 and 90 % ammonium sulphate, but not extracted with ethyl acetate. Reverse-phase HPLC revealed the production of a set of 5-6 active compounds by each strain (elution from 20 to 40 % acetonitrile), with similar but non identical HPLC patterns. Additionally, V. parahaemolyticus was able to progressively overcome the inhibition of antibiotics in trypticase soy agar with Fe(III) 0.5 up to 2 mM, suggesting the involvement of a set of novel siderophore or active molecules targeted at different Fe-siderophore uptake systems. The overall findings suggest that Pseudoalteromonas sp. DIT strains produce a putatively novel class of bacteriostatic and probably amphiphilic anti-Vibrio agents, indicating the need for further studies with chemical purification followed by their structural and functional characterization. Finally, the crude cell-free extracts, as well as the strains incubated at 10(3) and 10(5) c.f.u./mL, did not cause mortality in Artemia franciscana nauplii, suggesting that these bacteria are serious candidates for further probiotic evaluations with shellfish and fish cultures. PMID:22806110

  3. The Pathogen of the Great Barrier Reef Sponge Rhopaloeides odorabile Is a New Strain of Pseudoalteromonas agarivorans Containing Abundant and Diverse Virulence-Related Genes.

    PubMed

    Choudhury, Jayanta D; Pramanik, Arnab; Webster, Nicole S; Llewellyn, Lyndon E; Gachhui, Ratan; Mukherjee, Joydeep

    2015-08-01

    Sponge diseases have increased dramatically, yet the causative agents of disease outbreaks have eluded identification. We undertook a polyphasic taxonomic analysis of the only confirmed sponge pathogen and identified it as a novel strain of Pseudoalteromonas agarivorans. 16S ribosomal RNA (rRNA) and gyraseB (gyrB) gene sequences along with phenotypic characteristics demonstrated that strain NW4327 was most closely related to P. agarivorans. DNA-DNA hybridization and in silico genome comparisons established NW4327 as a novel strain of P. agarivorans. Genes associated with type IV pili, mannose-sensitive hemagglutinin pili, and curli formation were identified in NW4327. One gene cluster encoding ATP-binding cassette (ABC) transporter, HlyD and TolC, and two clusters related to the general secretion pathway indicated the presence of type I secretion system (T1SS) and type II secretion system (T2SS), respectively. A contiguous gene cluster of at least 19 genes related to type VI secretion system (T6SS) which included all 13 core genes was found. The absence of T1SS and T6SS in nonpathogenic P. agarivorans S816 established NW4327 as the virulent strain. Serine proteases and metalloproteases of the classes S8, S9, M4, M6, M48, and U32 were identified in NW4327, many of which can degrade collagen. Collagenase activity in NW4327 and its absence in the nonpathogenic P. agarivorans KMM 255(T) reinforced the invasiveness of NW4327. This is the first report unambiguously identifying a sponge pathogen and providing the first insights into the virulence genes present in any pathogenic Pseudoalteromonas genome. The investigation supports a theoretical study predicting high abundance of terrestrial virulence gene homologues in marine bacteria.

  4. Consistent Richness-Biomass Relationship across Environmental Gradients in a Marine Macroalgal-Dominated Subtidal Community on the Western Antarctic Peninsula.

    PubMed

    Valdivia, Nelson; Díaz, María José; Garrido, Ignacio; Gómez, Iván

    2015-01-01

    Biodiversity loss has spurred the biodiversity-ecosystem functioning research over a range of ecosystems. In Antarctica, however, the relationship of taxonomic and functional diversity with ecosystem properties (e.g., community biomass) has received less attention, despite the presence of sharp and dynamic environmental stress gradients that might modulate these properties. Here, we investigated whether the richness-biomass relationship in macrobenthic subtidal communities is still apparent after accounting for environmental stress gradients in Fildes Bay, King George Island, Antarctica. Measurements of biomass of mobile and sessile macrobenthic taxa were conducted in the austral summer 2013/4 across two environmental stress gradients: distance from nearest glaciers and subtidal depth (from 5 to 30 m). In general, community biomass increased with distance from glaciers and water depth. However, generalised additive models showed that distance from glaciers and depth accounted for negligible proportions of variation in the number of functional groups (i.e., functional richness) and community biomass when compared to taxonomic richness. Functional richness and community biomass were positive and saturating functions of taxonomic richness. Large endemic, canopy-forming brown algae of the order Desmarestiales dominated the community biomass across both gradients. Accordingly, differences in the composition of taxa accounted for a significant and large proportion (51%) of variation in community biomass in comparison with functional richness (10%). Our results suggest that the environmental factors here analysed may be less important than biodiversity in shaping mesoscale (several km) biomass patterns in this Antarctic system. We suggest that further manipulative, hypothesis-driven research should address the role of biodiversity and species' functional traits in the responses of Antarctic subtidal communities to environmental variation. PMID:26381149

  5. Consistent Richness-Biomass Relationship across Environmental Gradients in a Marine Macroalgal-Dominated Subtidal Community on the Western Antarctic Peninsula.

    PubMed

    Valdivia, Nelson; Díaz, María José; Garrido, Ignacio; Gómez, Iván

    2015-01-01

    Biodiversity loss has spurred the biodiversity-ecosystem functioning research over a range of ecosystems. In Antarctica, however, the relationship of taxonomic and functional diversity with ecosystem properties (e.g., community biomass) has received less attention, despite the presence of sharp and dynamic environmental stress gradients that might modulate these properties. Here, we investigated whether the richness-biomass relationship in macrobenthic subtidal communities is still apparent after accounting for environmental stress gradients in Fildes Bay, King George Island, Antarctica. Measurements of biomass of mobile and sessile macrobenthic taxa were conducted in the austral summer 2013/4 across two environmental stress gradients: distance from nearest glaciers and subtidal depth (from 5 to 30 m). In general, community biomass increased with distance from glaciers and water depth. However, generalised additive models showed that distance from glaciers and depth accounted for negligible proportions of variation in the number of functional groups (i.e., functional richness) and community biomass when compared to taxonomic richness. Functional richness and community biomass were positive and saturating functions of taxonomic richness. Large endemic, canopy-forming brown algae of the order Desmarestiales dominated the community biomass across both gradients. Accordingly, differences in the composition of taxa accounted for a significant and large proportion (51%) of variation in community biomass in comparison with functional richness (10%). Our results suggest that the environmental factors here analysed may be less important than biodiversity in shaping mesoscale (several km) biomass patterns in this Antarctic system. We suggest that further manipulative, hypothesis-driven research should address the role of biodiversity and species' functional traits in the responses of Antarctic subtidal communities to environmental variation.

  6. Consistent Richness-Biomass Relationship across Environmental Gradients in a Marine Macroalgal-Dominated Subtidal Community on the Western Antarctic Peninsula

    PubMed Central

    Valdivia, Nelson; Díaz, María José; Garrido, Ignacio; Gómez, Iván

    2015-01-01

    Biodiversity loss has spurred the biodiversity-ecosystem functioning research over a range of ecosystems. In Antarctica, however, the relationship of taxonomic and functional diversity with ecosystem properties (e.g., community biomass) has received less attention, despite the presence of sharp and dynamic environmental stress gradients that might modulate these properties. Here, we investigated whether the richness-biomass relationship in macrobenthic subtidal communities is still apparent after accounting for environmental stress gradients in Fildes Bay, King George Island, Antarctica. Measurements of biomass of mobile and sessile macrobenthic taxa were conducted in the austral summer 2013/4 across two environmental stress gradients: distance from nearest glaciers and subtidal depth (from 5 to 30 m). In general, community biomass increased with distance from glaciers and water depth. However, generalised additive models showed that distance from glaciers and depth accounted for negligible proportions of variation in the number of functional groups (i.e., functional richness) and community biomass when compared to taxonomic richness. Functional richness and community biomass were positive and saturating functions of taxonomic richness. Large endemic, canopy-forming brown algae of the order Desmarestiales dominated the community biomass across both gradients. Accordingly, differences in the composition of taxa accounted for a significant and large proportion (51%) of variation in community biomass in comparison with functional richness (10%). Our results suggest that the environmental factors here analysed may be less important than biodiversity in shaping mesoscale (several km) biomass patterns in this Antarctic system. We suggest that further manipulative, hypothesis-driven research should address the role of biodiversity and species’ functional traits in the responses of Antarctic subtidal communities to environmental variation. PMID:26381149

  7. Antarctic Miocene Climate

    NASA Astrophysics Data System (ADS)

    Ashworth, A. C.; Lewis, A. R.

    2013-12-01

    Fossils from Antarctic Miocene terrestrial deposits, coupled with stratigraphic, geochemical and paleontological data from marine boreholes, provide new insights into the climatic history of the continent. During the Miocene, ice caps coalesced to form ice sheets and vegetated surfaces gave way to barren expanses. The cryospheric changes especially have global climatic implications. The fossil data consists of diatoms, pollen and spores, and macroscopic remains of plants, ostracods, insects, molluscs and a fish. Plant fossils include wood and leaves of Nothofagus (southern beech), seeds of several vascular plants, including Ranunculus (buttercup), Hippuris (mare's-tail) and Myriophyllum (watermilfoil), megaspores of Isoetes (quillwort), and moss species. The insect chitin consists of larval head capsules of Chironomidae (midges) and exoskeletal parts of Coleoptera (beetles). The molluscs include freshwater gastropods and bivalves. The majority of these taxa are likely descendants of taxa that had survived on the continent from the Paleogene or earlier. Even though early Miocene glaciations may have been large, the climate was never cold enough to cause the extinction of the biota, which probably survived in coastal refugia. Early Miocene (c. 20 Ma) macrofossils from the McMurdo Dry Valleys (77°S) support palynological interpretations from the Cape Roberts and ANDRILL marine records that the upland vegetation was a shrub tundra. Mean summer temperature (MST) in the uplands was c. 6°C and possibly higher at the coast. The climate was wet, supporting mires and lakes. By the mid-Miocene, even though the climate continued to be wet. MST was c. 4°C which was too cold to support Nothofagus and most vascular plant species. Stratigraphic evidence indicates that the time between the Early and Mid-Miocene was a time of repeated ice advances and retreats of small glaciers originating from ice caps. At c. 14 Ma there appears to have been a modal shift in climate to

  8. 77 FR 3799 - Notice of Permit Applications Received Under the Antarctic Conservation Act of 1978

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-01-25

    ... plans to take from the Palmer Station area approximately 20 brown marine algae, 30 green marine algae, 10 red marine algae, and 10 diatom marine algae to sublimate cultures of filamentous Antarctic... interactions of epiphytic and endophytic algae (both filamentous macroalgae and diatoms) with larger...

  9. 77 FR 4060 - Notice of Permit Applications Received Under the Antarctic Conservation Act of 1978

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-01-26

    ... to take from the Palmer Station area approximately 20 brown marine algae, 30 green marine algae, 10 red marine algae, and 10 diatom marine algae to sublimate cultures of ] filamentous Antarctic... interactions of epiphytic and endophytic algae (both filamentous macroalgae and diatoms) with larger...

  10. Histopathology of Antarctic krill, Euphausia superba, bearing black spots.

    PubMed

    Miwa, S; Kamaishi, T; Matsuyama, T; Hayashi, T; Naganobu, M

    2008-07-01

    Small black spots have been noticed on the cephalothorax of Antarctic krill, Euphausia superba, since January, 2001. To study the nature of the black spots, the krill were sampled in the winter of 2003, 2006, and 2007 in the South Georgia region, the Antarctic Ocean. Histological observations revealed that the black spots were melanized nodules that were composed of hemocytes surrounding either bacteria or amorphous material. In the 2007 samples, 42% of the krill had melanized nodules. Most of the nodules had an opening on the body surface of the krill. A single melanized nodule often contained more than one type of morphologically distinct bacterial cell. Three bacteria were isolated from these black spots, and classified into either Psychrobacter or Pseudoalteromonas based on the sequences of 16S rRNA genes. More than three bacterial species or strains were also confirmed by in situ hybridization for 16S rRNA. The melanized nodules were almost always accompanied by a mass of atypical, large heteromorphic cells, which were not observed in apparently healthy krill. Unidentified parasites were observed in some of the krill that had melanized nodules. These parasites were directly surrounded by the large heteromorphic cells. Histological observations suggested that these heteromorphic cells were attacking the parasites. These results suggest the possibility that the krill had been initially affected by parasite infections, and the parasitized spots were secondary infected by environmental bacteria after the parasites had escaped from the host body.

  11. Structural characterization and ecological roles of a novel exopolysaccharide from the deep-sea psychrotolerant bacterium Pseudoalteromonas sp. SM9913.

    PubMed

    Qin, Guokui; Zhu, Lizhi; Chen, Xiulan; Wang, Peng George; Zhang, Yuzhong

    2007-05-01

    Pseudoalteromonas sp. SM9913 is a psychrotolerant bacterium isolated from deep-sea sediment. The structural characterization and ecological roles of the exopolysaccharide (EPS) secreted by this strain were studied in this work. The yield of the EPS increased as the culture temperature decreased in the range 30-10 degrees C, and it reached 5.25 g l(-1) (dry weight) under optimal growth conditions (15 degrees C, 52 h). EPS fraction was purified and its structure was identified by the combination of NMR spectra, high-resolution mass spectrometry (HRMS) analysis and methylation analysis. The ratio of the sugar units, the acetyl group and the ethoxyl group was close to 4 : 5 : 1. The major sugar unit of the EPS was 6-linked glucose (61.8 %); other sugar units present included terminal arabinofuranosyl (11.0 %) and glucopyranosyl (11.2 %) residues and a small amount of other sugar derivatives. Its structure was different from EPSs reported for other marine bacteria. Besides the structural elucidation of the EPS, its ecological roles were studied. This EPS could enhance the stability of the cold-adapted protease MCP-01 secreted by the same strain through preventing its autolysis. It could bind many metal ions, including Fe(2+), Zn(2+), Cu(2+), Co(2+). It was also a very good flocculating agent and could conglomerate colloidal and suspended particles. These results indicated that the EPS secreted by strain SM9913 might help this strain enrich the proteinaceous particles and the trace metals in the deep-sea environment, stabilize the secreted cold-adapted proteases and avoid its diffusion. This is believed to be the first report on the structure of the EPS secreted by a deep-sea psychrotolerant bacterium and its ecological roles. According to these results and other studies, a schematic diagram of the lifestyle of the deep-sea psychrotolerant strain SM9913 is suggested.

  12. Structural Insights into the Multispecific Recognition of Dipeptides of Deep-Sea Gram-Negative Bacterium Pseudoalteromonas sp. Strain SM9913

    PubMed Central

    Li, Chun-Yang; Chen, Xiu-Lan; Qin, Qi-Long; Wang, Peng; Zhang, Wei-Xin; Xie, Bin-Bin; Su, Hai-Nan; Zhou, Bai-Cheng; Zhang, Yu-Zhong

    2015-01-01

    ABSTRACT Peptide uptake is important for nutrition supply for marine bacteria. It is also an important step in marine nitrogen cycling. However, how marine bacteria absorb peptides is still not fully understood. DppA is the periplasmic dipeptide binding protein of dipeptide permease (Dpp; an important peptide transporter in bacteria) and exclusively controls the substrate specificity of Dpp. Here, the substrate binding specificity of deep-sea Pseudoalteromonas sp. strain SM9913 DppA (PsDppA) was analyzed for 25 different dipeptides with various properties by using isothermal titration calorimetry measurements. PsDppA showed binding affinities for 8 dipeptides. To explain the multispecific substrate recognition mechanism of PsDppA, we solved the crystal structures of unliganded PsDppA and of PsDppA in complex with 4 different types of dipeptides (Ala-Phe, Met-Leu, Gly-Glu, and Val-Thr). PsDppA alternates between an “open” and a “closed” form during substrate binding. Structural analyses of the 4 PsDppA-substrate complexes combined with mutational assays indicate that PsDppA binds to different substrates through a precise mechanism: dipeptides are bound mainly by the interactions between their backbones and PsDppA, in particular by anchoring their N and C termini through ion-pair interactions; hydrophobic interactions are important in binding hydrophobic dipeptides; and Lys457 is necessary for the binding of dipeptides with a C-terminal glutamic acid or glutamine. Additionally, sequence alignment suggests that the substrate recognition mechanism of PsDppA may be common in Gram-negative bacteria. All together, our results provide structural insights into the multispecific substrate recognition mechanism of marine Gram-negative bacterial DppA, which provides a better understanding of the mechanisms of marine bacterial peptide uptake. IMPORTANCE Peptide uptake plays a significant role in nutrition supply for marine bacteria. It is also an important step in

  13. 78 FR 25703 - Taking and Importing Marine Mammals; Taking Marine Mammals Incidental to Fisheries Research

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-02

    ... (off the U.S. west coast), the Eastern Tropical Pacific Research Area, and the Antarctic Research Area (in the Antarctic Scotia Sea). It is possible that marine mammals may interact with fishing gear (e.g... and treaties related to the management of living marine resources in international waters outside...

  14. Isolation and characterization of a novel agarase-producing Pseudoalteromonas spp. bacterium from the guts of spiny turban shells.

    PubMed

    Oh, Young Hoon; Jung, Changkyou; Lee, Jinwon

    2011-08-01

    An agar-degrading bacterium was isolated from the guts of spiny turban shells. It was identified as a Pseudoalteromonas species and named Pseudoalteromonas sp. JYBCL 1. The viscosity of the inoculated agar medium decreased by more than 60% after 20 h cultivation. The agarase produced by the isolate had optimal activities at 35 degrees C and pH 7. The enzyme had extremely strong resistance to ionic stress compared with other known agarases. Its molecular mass was estimated at about 60 kDa by sodium dodecyl sulfate polyacrylamide gel electrophoresis. The agarase could saccharify Gelidium amansii directly, with an efficiency about half that compared with agar saccharification.

  15. The Antarctic ozone hole

    NASA Technical Reports Server (NTRS)

    Molina, Mario J.

    1988-01-01

    Observations of Antarctic ozone levels and the discovery of a hole in the Antarctic region are examined. The effects of chlorofluorocarbons (CFCs) on the level of stratospheric ozone are analyzed. Three cycles explaining the cause of ozone depletion in the poles are proposed. A comparison of field data and proposed depletion cycles reveals that the chemical origin of the ozone hole is due to CFCs. The potential global effects of the Antarctic ozone hole are discussed.

  16. Freezing resistance in some Antarctic fishes.

    PubMed

    DeVries, A L; Wohlschlag, D E

    1969-03-01

    Measurements of serum freezing points in three Antarctic marine fishes indicated that they do not freeze in the -1.87 degrees C seawater because their blood is isosmotic to seawater. Concentrations of sodium chloride, urea, and free amino acids in the serum accounted for only half of the freezing-point depression of the serum. A protein containing carbohydrate was isolated which accounted for 30 percent of the freezing-point depression of the serum. PMID:5764871

  17. Antarctic news clips, 1991

    NASA Astrophysics Data System (ADS)

    1991-08-01

    Published stories are presented that sample a year's news coverage of Antarctica. The intent is to provide the U.S. Antarctic Program participants with a digest of current issues as presented by a variety of writers and popular publications. The subject areas covered include the following: earth science; ice studies; stratospheric ozone; astrophysics; life science; operations; education; antarctic treaty issues; and tourism

  18. The Antarctic Ozone Hole.

    ERIC Educational Resources Information Center

    Stolarski, Richard S.

    1988-01-01

    Discusses the Airborne Antarctic Ozone Experiment (1987) and the findings of the British Antarctic Survey (1985). Proposes two theories for the appearance of the hole in the ozone layer over Antarctica which appears each spring; air pollution and natural atmospheric shifts. Illustrates the mechanics of both. Supports worldwide chlorofluorocarbon…

  19. The Antarctic Ice.

    ERIC Educational Resources Information Center

    Radok, Uwe

    1985-01-01

    The International Antarctic Glaciological Project has collected information on the East Antarctic ice sheet since 1969. Analysis of ice cores revealed climatic history, and radar soundings helped map bedrock of the continent. Computer models of the ice sheet and its changes over time will aid in predicting the future. (DH)

  20. Antarctic Meteorology and Climatology

    NASA Astrophysics Data System (ADS)

    King, J. C.; Turner, J.

    1997-07-01

    This book is a comprehensive survey of the climatology and meteorology of Antarctica. The first section of the book reviews the methods by which we can observe the Antarctic atmosphere and presents a synthesis of climatological measurements. In the second section, the authors consider the processes that maintain the observed climate, from large-scale atmospheric circulation to small-scale processes. The final section reviews our current knowledge of the variability of Antarctic climate and the possible effects of "greenhouse" warming. The authors stress links among the Antarctic atmosphere, other elements of the Antarctic climate system (oceans, sea ice and ice sheets), and the global climate system. This volume will be of greatest interest to meteorologists and climatologists with a specialized interest in Antarctica, but it will also appeal to researchers in Antarctic glaciology, oceanography and biology. Graduates and undergraduates studying physical geography, and the earth, atmospheric and environmental sciences will find much useful background material in the book.

  1. Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain MQS005, a Bacterium with Potential Quorum-Sensing Regulation.

    PubMed

    Pan, Yonglong; Wang, Yanbo; Yan, Xiaoqing; Mazumder, Asit; Liang, Yan

    2016-01-01

    We present here the draft genome sequence of Pseudoalteromonas tetraodonis strain MQS005, a bacterium possessing potential quorum-sensing regulatory activity. This strain was isolated from water from the South China Sea, People's Republic of China. The assembly consists of 4,252,538 bp and contains 144 contigs, with a G+C content of 41.85%. PMID:27491986

  2. Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain MQS005, a Bacterium with Potential Quorum-Sensing Regulation.

    PubMed

    Pan, Yonglong; Wang, Yanbo; Yan, Xiaoqing; Mazumder, Asit; Liang, Yan

    2016-01-01

    We present here the draft genome sequence of Pseudoalteromonas tetraodonis strain MQS005, a bacterium possessing potential quorum-sensing regulatory activity. This strain was isolated from water from the South China Sea, People's Republic of China. The assembly consists of 4,252,538 bp and contains 144 contigs, with a G+C content of 41.85%.

  3. Characterization of a New Cold-Adapted and Salt-Activated Polysaccharide Lyase Family 7 Alginate Lyase from Pseudoalteromonas sp. SM0524

    PubMed Central

    Chen, Xiu-Lan; Dong, Sheng; Xu, Fei; Dong, Fang; Li, Ping-Yi; Zhang, Xi-Ying; Zhou, Bai-Cheng; Zhang, Yu-Zhong; Xie, Bin-Bin

    2016-01-01

    Marine bacterial alginate lyases play a role in marine alginate degradation and carbon cycling. Although a large number of alginate lyases have been characterized, reports on alginate lyases with special characteristics are still rather less. Here, a gene alyPM encoding an alginate lyase of polysaccharide lyase family 7 (PL7) was cloned from marine Pseudoalteromonas sp. SM0524 and expressed in Escherichia coli. AlyPM shows 41% sequence identity to characterized alginate lyases, indicating that AlyPM is a new PL7 enzyme. The optimal pH for AlyPM activity was 8.5. AlyPM showed the highest activity at 30°C and remained 19% of the highest activity at 5°C. AlyPM was unstable at temperatures above 30°C and had a low Tm of 37°C. These data indicate that AlyPM is a cold-adapted enzyme. Moreover, AlyPM is a salt-activated enzyme. AlyPM activity in 0.5–1.2 M NaCl was sixfolds higher than that in 0 M NaCl, probably caused by a significant increase in substrate affinity, because the Km of AlyPM in 0.5 M NaCl decreased more than 20-folds than that in 0 M NaCl. AlyPM preferably degraded polymannuronate and mainly released dimers and trimers. These data indicate that AlyPM is a new PL7 endo-alginate lyase with special characteristics. PMID:27486451

  4. Physiological and genetic analyses reveal a mechanistic insight into the multifaceted lifestyles of Pseudoalteromonas sp. SM9913 adapted to the deep-sea sediment.

    PubMed

    Mi, Zi-Hao; Yu, Zi-Chao; Su, Hai-Nan; Wang, Lei; Chen, Xiu-Lan; Pang, Xiuhua; Qin, Qi-Long; Xie, Bin-Bin; Zhang, Xi-Ying; Zhou, Bai-Cheng; Zhang, Yu-Zhong

    2015-10-01

    Although bacteriobenthos play a major role in the degradation of particulate organic matter in marine sediment, knowledge of the sediment-adapted lifestyles of bacteriobenthos is still scarce. Here, the particle-associated, swimming and swarming lifestyles of the benthonic bacterium Pseudoalteromonas sp. SM9913 (SM9913) were illustrated. SM9913 had a clay particle-associated lifestyle, and its exopolysaccharide played an important role in this lifestyle. SM9913 also had swimming and swarming motilities, indicating that it may have swimming and swarming lifestyles in the sediment. The lateral flagella were responsible for the swarming motility, and the polar flagella were responsible for the swimming motility. Iron limitation was an indispensable inductive signal of the swarming motility. An analysis of the motilities of SM9913 and its mutants in clay demonstrated that SM9913 moved in clay by both swimming and swarming motilities. Genomic analysis suggests that having two flagella systems is most likely a common adaptation of some bacteriobenthos to the sediment environment. Our results reveal the lifestyles of benthonic SM9913, providing a better understanding of the environmental adaptation of benthonic bacteria. PMID:25727765

  5. Purification and characterization of cold-adapted beta-agarase from an Antarctic psychrophilic strain

    PubMed Central

    Li, Jiang; Hu, Qiushi; Li, Yuquan; Xu, Yuan

    2015-01-01

    An extracellular β-agarase was purified from Pseudoalteromonas sp. NJ21, a Psychrophilic agar-degrading bacterium isolated from Antarctic Prydz Bay sediments. The purified agarase (Aga21) revealed a single band on sodium dodecyl sulfate-polyacrylamide gel electrophoresis, with an apparent molecular weight of 80 kDa. The optimum pH and temperature of the agarase were 8.0 and 30 °C, respectively. However, it maintained as much as 85% of the maximum activities at 10 °C. Significant activation of the agarase was observed in the presence of Mg2+, Mn2+, K+; Ca2+, Na+, Ba2+, Zn2+, Cu2+, Co2+, Fe2+, Sr2+ and EDTA inhibited the enzyme activity. The enzymatic hydrolyzed product of agar was characterized as neoagarobiose. Furthermore, this work is the first evidence of cold-adapted agarase in Antarctic psychrophilic bacteria and these results indicate the potential for the Antarctic agarase as a catalyst in medicine, food and cosmetic industries. PMID:26413048

  6. Thermal status of Antarctic divers.

    PubMed

    Bridgman, S A

    1990-09-01

    I studied 5 wet-suited scuba divers studied on 26 dives in the Antarctic. The median duration of dives was 29 min, during which divers were usually involved in sampling or observations for marine biology or chemistry projects. Rectal temperature (Tre) and seven skin site temperatures were measured with thermistors, and mean skin temperature (Tsk) and heat loss estimated. Divers usually heated up during changing and transport to a dive. By the end of immersion, Tsk decreased to a median of 22 degrees C, and finger temperature decreased to a median of 10 degrees C, while the median heat loss during immersion was 850 kJ. Tre below 36 degrees C was not recorded. This study shows that divers do not become clinically hypothermic, but that they are subject to severe cooling, and skin temperatures reach levels at which manual and mental impairment may occur.

  7. Antarctic Tephra Database (AntT)

    NASA Astrophysics Data System (ADS)

    Kurbatov, A.; Dunbar, N. W.; Iverson, N. A.; Gerbi, C. C.; Yates, M. G.; Kalteyer, D.; McIntosh, W. C.

    2014-12-01

    Modern paleoclimate research is heavily dependent on establishing accurate timing related to rapid shifts in Earth's climate system. The ability to correlate these events at local, and ideally at the intercontinental scales, allows assessment, for example, of phasing or changes in atmospheric circulation. Tephra-producing volcanic eruptions are geologically instantaneous events that are largely independent of climate. We have developed a tephrochronological framework for paleoclimate research in Antarctic in a user friendly, freely accessible online Antarctic tephra (AntT) database (http://cci.um.maine.edu/AntT/). Information about volcanic events, including physical and geochemical characteristics of volcanic products collected from multiple data sources, are integrated into the AntT database.The AntT project establishes a new centralized data repository for Antarctic tephrochronology, which is needed for precise correlation of records between Antarctic ice cores (e.g. WAIS Divide, RICE, Talos Dome, ITASE) and global paleoclimate archives. The AntT will help climatologists, paleoclimatologists, atmospheric chemists, geochemists, climate modelers synchronize paleoclimate archives using volcanic products that establishing timing of climate events in different geographic areas, climate-forcing mechanisms, natural threshold levels in the climate system. All these disciplines will benefit from accurate reconstructions of the temporal and spatial distribution of past rapid climate change events in continental, atmospheric, marine and polar realms. Research is funded by NSF grants: ANT-1142007 and 1142069.

  8. Tolerance of Antarctic soil fungi to hydrocarbons.

    PubMed

    Hughes, Kevin A; Bridge, Paul; Clark, Melody S

    2007-01-01

    Little is known about the effects of hydrocarbons and fuel oil on Antarctic filamentous fungi in the terrestrial Antarctic environment. Growth of fungi and bacteria from soils around Rothera Research Station (Adelaide Island, Antarctic Peninsula) was assessed in the presence of ten separate aromatic and aliphatic hydrocarbons [marine gas oil (MGO), dodecane, hexadecane, benzoic acid, p-hydroxybenzoic acid, toluene, phenol, biphenyl, naphthalene and m- and p-xylenes with ethylbenzene]. Aromatic hydrocarbons inhibited soil microbial growth more than aliphatic hydrocarbons. Soil microorganisms from a moss patch, where little previous impact or hydrocarbon contamination had occurred, were less tolerant of hydrocarbons than those from high impact sites. Fungal growth rates of Mollisia sp., Penicillium commune, Mortierella sp., Trichoderma koningii, Trichoderma sp. and Phoma herbarum were assessed in the presence of hydrocarbons. Generally, aromatic hydrocarbons inhibited or stopped hyphal extension, though growth rates increased with some aliphatic hydrocarbons. Hyphal dry weight measurements suggested that Mortierella sp. may be able to use dodecane as sole carbon and energy source. Hydrocarbon-degrading Antarctic fungi may have use in future hydrocarbon spill bioremediation.

  9. Structure of EstA esterase from psychrotrophic Pseudoalteromonas sp. 643A covalently inhibited by monoethylphosphonate

    SciTech Connect

    Brzuszkiewicz, Anna; Nowak, Elzbieta; Dauter, Zbigniew; Dauter, Miroslawa; Cieslinski, Hubert; Dlugolecka, Anna; Kur, Józef

    2010-10-28

    The crystal structure of the esterase EstA from the cold-adapted bacterium Pseudoalteromonas sp. 643A was determined in a covalently inhibited form at a resolution of 1.35 {angstrom}. The enzyme has a typical SGNH hydrolase structure consisting of a single domain containing a five-stranded {beta}-sheet, with three helices at the convex side and two helices at the concave side of the sheet, and is ornamented with a couple of very short helices at the domain edges. The active site is located in a groove and contains the classic catalytic triad of Ser, His and Asp. In the structure of the crystal soaked in diethyl p-nitrophenyl phosphate (DNP), the catalytic serine is covalently connected to a phosphonate moiety that clearly has only one ethyl group. This is the only example in the Protein Data Bank of a DNP-inhibited enzyme with covalently bound monoethylphosphate.

  10. The impacts of local human activities on the Antarctic environment

    NASA Astrophysics Data System (ADS)

    Tin, T.; Fleming, Z. L.; Hughes, K. A.; Ainley, D. G.; Convey, P.; Moreno, C. A.; Pfeiffer, S.; Scott, J.; Snape, I.

    2009-04-01

    An overview of a recently published review of the scientific literature from the past decade on the impacts of human activities on the Antarctic environment is presented. An assessment of the cumulative effects of scientists and accompanying base construction, tourists and fishery activities in Antarctica is timely given a decade since the Protocol on Environmental Protection to the Antarctic Treaty came into force in 1998 and the increasing attention given to and human presence in Antarctica during this 2007-2009 IPY. A range of impacts has been identified at a variety of spatial and temporal scales. Chemical contamination and sewage disposal on the continent have been found to be long-lived, with contemporary sewage management practices at many coastal stations insufficient to prevent local contamination. Human activities, particularly construction and transport, have affected Antarctic flora and fauna and a small number of non-indigenous plant and animal species has become established on some of the Antarctic Peninsula and sub Antarctic islands. There is little indication of recovery of overexploited fish stocks, and ramifications of fishing activity on bycatch species and the ecosystem could also be far-reaching. The Antarctic Treaty System and its instruments, in particular the Convention for the Conservation of Antarctic Marine Living Resources (CCAMLR) and the Environmental Protocol, provide a framework within which management of human activities take place. In order to ensure comprehensive protection of the Antarctic environment, including its intrinsic, wilderness and scientific values in the face of the continuing expansion of human activities in Antarctica, a more effective implementation of a wide range of measures is essential. These include effective environmental impact assessments, long-term monitoring, mitigation measures for non-indigenous species, ecosystem-based management of living resources, and increased regulation of National Antarctic

  11. Isolation and characterization of Pseudoalteromonas sp. from fermented Korean food, as an antagonist to Vibrio harveyi.

    PubMed

    Morya, V K; Choi, Wooyoung; Kim, Eun-Ki

    2014-02-01

    The microbial intervention for sustainable management of aquaculture, especially use of probiotics, is one of the most popular and practical approaches towards controlling pathogens. Vibrio harveyi is a well-known pathogenic bacterium, which is associated to a huge economic loss in the aquaculture system by causing vibriosis. The present study is crafted for screening and characterization of anti-Vibrio strains, which were isolated from various traditional fermented Korean foods. A total of 196 strains have been isolated from soybean paste (78 strains), red chili paste (49 strains), soy sauce (18 strains), jeotgal-a salted fish (34 strains), and the gazami crab-Portunus trituberculatus (17 strains). Fifteen strains showed an inhibitory effect on the growth of V. harveyi when subjected to coculture condition. Among the strains isolated, one has been identified as a significant anti-Vibrio strain. Further biochemical characterization and 16S rDNA sequencing revealed it as Pseudoalteromonas aliena, which had been deposited at the Korean Culture Center of Microorganisms (KCCM), Korea and designated as KCCM 11207P. The culture supernatants did not have any antimicrobial properties either in pure or in coculture condition. The culture supernatant was not toxic when supplemented to the swimming crab, Zoea, and Artemia larvae in aquaculture system. The results were very encouraging and showed a significant reduction in accumulated mortality. Here, we reported that pathogenic vibriosis can be controlled by Pseudoalteromonas sp. under in vitro and in vivo conditions. The results indicated that the biotic treatment offers a promising alternative to the use of antibiotics in crab aquaculture. PMID:23793257

  12. Total Mercury in Six Antarctic Notothenioid Fishes.

    PubMed

    Wintle, Nathan J P; Sleadd, Isaac M; Gundersen, Deke T; Kohl, Kristina; Buckley, Bradley A

    2015-11-01

    We analyzed white muscle samples from six species of Antarctic fish (suborder Notothenioidei) collected in 2011 from McMurdo Sound, Ross Sea, Antarctica, to assess levels of total mercury (THg). Gymnodraco acuticeps and Trematomus bernacchii exhibited the highest concentrations of THg followed by Trematomus pennellii, Trematomus nicolai, Trematomus newnesi and Pagothenia borchgrevinki, (71.3, 53.9±32.1, 45.8±27.3, 37.2±18.6, 35.7±23.6, and 21.9±2.8 ng/g wet weight, respectively). The results from this study suggest that THg has the potential to bioaccumulate from various marine Antarctic ecosystems into biota.

  13. Subsurface Salts in Antarctic Dry Valley Soils

    NASA Technical Reports Server (NTRS)

    Englert, P.; Bishop, J. L.; Gibson, E. K.; Koeberl, C.

    2013-01-01

    The distribution of water-soluble ions, major and minor elements, and other parameters were examined to determine the extent and effects of chemical weathering on cold desert soils. Patterns at the study sites support theories of multiple salt forming processes, including marine aerosols and chemical weathering of mafic minerals. Periodic solar-mediated ionization of atmospheric nitrogen might also produce high nitrate concentrations found in older sediments. Chemical weathering, however, was the major contributor of salts in Antarctic Dry Valleys. The Antarctic Dry Valleys represent a unique analog for Mars, as they are extremely cold and dry desert environments. Similarities in the climate, surface geology, and chemical properties of the Dry Valleys to that of Mars imply the possible presence of these soil formation mechanisms on Mars, other planets and icy satellites.

  14. Screening of microorganisms from Antarctic surface water and cytotoxicity metabolites from Antarctic microorganisms.

    PubMed

    Zheng, Lanhong; Yang, Kangli; Liu, Jia; Sun, Mi; Zhu, Jiancheng; Lv, Mei; Kang, Daole; Wang, Wei; Xing, Mengxin; Li, Zhao

    2016-03-01

    The Antarctic is a potentially important library of microbial resources and new bioactive substances. In this study, microorganisms were isolated from surface water samples collected from different sites of the Antarctic. 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) assay-based cytotoxicity-tracking method was used to identify Antarctic marine microorganism resources for antitumor lead compounds. The results showed that a total of 129 Antarctic microorganism strains were isolated. Twelve strains showed potent cytotoxic activities, among which a Gram-negative, rod-shaped bacterium, designated as N11-8 was further studied. Phylogenetic analysis based on 16S rRNA gene sequence showed that N11-8 belongs to the genus Bacillus. Fermented active products of N11-8 with molecular weights of 1-30 kDa had higher inhibitory effects on different cancaer cells, such as BEL-7402 human hepatocellular carcinoma cells, U251 human glioma cells, RKO human colon carcinoma cells, A549 human lung carcinoma cells, and MCF-7 human breast carcinoma cells. However, they displayed lower cytotoxicity against HFL1 human normal fibroblast lung cells. However, they displayed lower cytotoxicity against HFL1 human normal fibroblast lung cells. Microscopic observations showed that the fermented active products have inhibitory activity on BEL-7402 cells similar to that of mitomycin C. Further studies indicated that the fermented active products have high pH and high thermal stability. In conclusion, most strains isolated in this study may be developed as promising sources for the discovery of antitumor bioactive substances. The fermented active products of Antarctic marine Bacillus sp. N11- 8 are expected to be applied in the prevention and treatment of cancer.

  15. Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain MQS005, a Bacterium with Potential Quorum-Sensing Regulation

    PubMed Central

    Pan, Yonglong; Wang, Yanbo; Yan, Xiaoqing; Mazumder, Asit

    2016-01-01

    We present here the draft genome sequence of Pseudoalteromonas tetraodonis strain MQS005, a bacterium possessing potential quorum-sensing regulatory activity. This strain was isolated from water from the South China Sea, People’s Republic of China. The assembly consists of 4,252,538 bp and contains 144 contigs, with a G+C content of 41.85%. PMID:27491986

  16. At-Sea Distribution and Prey Selection of Antarctic Petrels and Commercial Krill Fisheries

    PubMed Central

    Descamps, Sébastien; Tarroux, Arnaud; Cherel, Yves; Delord, Karine; Godø, Olaf Rune; Kato, Akiko; Krafft, Bjørn A.; Lorentsen, Svein-Håkon; Ropert-Coudert, Yan; Skaret, Georg; Varpe, Øystein

    2016-01-01

    Commercial fisheries may impact marine ecosystems and affect populations of predators like seabirds. In the Southern Ocean, there is an extensive fishery for Antarctic krill Euphausia superba that is projected to increase further. Comparing distribution and prey selection of fishing operations versus predators is needed to predict fishery-related impacts on krill-dependent predators. In this context, it is important to consider not only predators breeding near the fishing grounds but also the ones breeding far away and that disperse during the non-breeding season where they may interact with fisheries. In this study, we first quantified the overlap between the distribution of the Antarctic krill fisheries and the distribution of a krill dependent seabird, the Antarctic petrel Thalassoica antarctica, during both the breeding and non-breeding season. We tracked birds from the world biggest Antarctic petrel colony (Svarthamaren, Dronning Maud Land), located >1000 km from the main fishing areas, during three consecutive seasons. The overall spatial overlap between krill fisheries and Antarctic petrels was limited but varied greatly among and within years, and was high in some periods during the non-breeding season. In a second step, we described the length frequency distribution of Antarctic krill consumed by Antarctic petrels, and compared this with results from fisheries, as well as from diet studies in other krill predators. Krill taken by Antarctic petrels did not differ in size from that taken by trawls or from krill taken by most Antarctic krill predators. Selectivity for specific Antarctic krill stages seems generally low in Antarctic predators. Overall, our results show that competition between Antarctic petrels and krill fisheries is currently likely negligible. However, if krill fisheries are to increase in the future, competition with the Antarctic petrel may occur, even with birds breeding thousands of kilometers away. PMID:27533327

  17. At-Sea Distribution and Prey Selection of Antarctic Petrels and Commercial Krill Fisheries.

    PubMed

    Descamps, Sébastien; Tarroux, Arnaud; Cherel, Yves; Delord, Karine; Godø, Olaf Rune; Kato, Akiko; Krafft, Bjørn A; Lorentsen, Svein-Håkon; Ropert-Coudert, Yan; Skaret, Georg; Varpe, Øystein

    2016-01-01

    Commercial fisheries may impact marine ecosystems and affect populations of predators like seabirds. In the Southern Ocean, there is an extensive fishery for Antarctic krill Euphausia superba that is projected to increase further. Comparing distribution and prey selection of fishing operations versus predators is needed to predict fishery-related impacts on krill-dependent predators. In this context, it is important to consider not only predators breeding near the fishing grounds but also the ones breeding far away and that disperse during the non-breeding season where they may interact with fisheries. In this study, we first quantified the overlap between the distribution of the Antarctic krill fisheries and the distribution of a krill dependent seabird, the Antarctic petrel Thalassoica antarctica, during both the breeding and non-breeding season. We tracked birds from the world biggest Antarctic petrel colony (Svarthamaren, Dronning Maud Land), located >1000 km from the main fishing areas, during three consecutive seasons. The overall spatial overlap between krill fisheries and Antarctic petrels was limited but varied greatly among and within years, and was high in some periods during the non-breeding season. In a second step, we described the length frequency distribution of Antarctic krill consumed by Antarctic petrels, and compared this with results from fisheries, as well as from diet studies in other krill predators. Krill taken by Antarctic petrels did not differ in size from that taken by trawls or from krill taken by most Antarctic krill predators. Selectivity for specific Antarctic krill stages seems generally low in Antarctic predators. Overall, our results show that competition between Antarctic petrels and krill fisheries is currently likely negligible. However, if krill fisheries are to increase in the future, competition with the Antarctic petrel may occur, even with birds breeding thousands of kilometers away. PMID:27533327

  18. At-Sea Distribution and Prey Selection of Antarctic Petrels and Commercial Krill Fisheries.

    PubMed

    Descamps, Sébastien; Tarroux, Arnaud; Cherel, Yves; Delord, Karine; Godø, Olaf Rune; Kato, Akiko; Krafft, Bjørn A; Lorentsen, Svein-Håkon; Ropert-Coudert, Yan; Skaret, Georg; Varpe, Øystein

    2016-01-01

    Commercial fisheries may impact marine ecosystems and affect populations of predators like seabirds. In the Southern Ocean, there is an extensive fishery for Antarctic krill Euphausia superba that is projected to increase further. Comparing distribution and prey selection of fishing operations versus predators is needed to predict fishery-related impacts on krill-dependent predators. In this context, it is important to consider not only predators breeding near the fishing grounds but also the ones breeding far away and that disperse during the non-breeding season where they may interact with fisheries. In this study, we first quantified the overlap between the distribution of the Antarctic krill fisheries and the distribution of a krill dependent seabird, the Antarctic petrel Thalassoica antarctica, during both the breeding and non-breeding season. We tracked birds from the world biggest Antarctic petrel colony (Svarthamaren, Dronning Maud Land), located >1000 km from the main fishing areas, during three consecutive seasons. The overall spatial overlap between krill fisheries and Antarctic petrels was limited but varied greatly among and within years, and was high in some periods during the non-breeding season. In a second step, we described the length frequency distribution of Antarctic krill consumed by Antarctic petrels, and compared this with results from fisheries, as well as from diet studies in other krill predators. Krill taken by Antarctic petrels did not differ in size from that taken by trawls or from krill taken by most Antarctic krill predators. Selectivity for specific Antarctic krill stages seems generally low in Antarctic predators. Overall, our results show that competition between Antarctic petrels and krill fisheries is currently likely negligible. However, if krill fisheries are to increase in the future, competition with the Antarctic petrel may occur, even with birds breeding thousands of kilometers away.

  19. Unveiling the pan-genome of the SXT/R391 family of ICEs: molecular characterisation of new variable regions of SXT/R391-like ICEs detected in Pseudoalteromonas sp. and Vibrio scophthalmi.

    PubMed

    Rodríguez-Blanco, Arturo; Lemos, Manuel L; Osorio, Carlos R

    2016-08-01

    Integrating conjugative elements (ICEs) of the SXT/R391 family have been identified in fish-isolated bacterial strains collected from marine aquaculture environments of the northwestern Iberian Peninsula. Here we analysed the variable regions of two ICEs, one preliminarily characterised in a previous study (ICEVscSpa3) and one newly identified (ICEPspSpa1). Bacterial strains harboring these ICEs were phylogenetically assigned to Vibrio scophthalmi and Pseudoalteromonas sp., thus constituting the first evidence of SXT/R391-like ICEs in the genus Pseudoalteromonas to date. Variable DNA regions, which confer element-specific properties to ICEs of this family, were characterised. Interestingly, the two ICEs contained 29 genes not found in variable DNA insertions of previously described ICEs. Most notably, variable gene content for ICEVscSpa3 showed similarity to genes potentially involved in housekeeping functions of replication, nucleotide metabolism and transcription. For these genes, closest homologues were found clustered in the genome of Pseudomonas psychrotolerans L19, suggesting a transfer as a block to ICEVscSpa3. Genes encoding antibiotic resistance, restriction modification systems and toxin/antitoxin systems were absent from hotspots of ICEVscSpa3. In contrast, the variable gene content of ICEPspSpa1 included genes involved in restriction/modification functions in two different hotspots and genes related to ICE maintenance. The present study unveils a relatively large number of novel genes in SXT/R391-ICEs, and demonstrates the major role of ICE elements as contributors to horizontal gene transfer. PMID:27230650

  20. Sugars in Antarctic aerosol

    NASA Astrophysics Data System (ADS)

    Barbaro, Elena; Kirchgeorg, Torben; Zangrando, Roberta; Vecchiato, Marco; Piazza, Rossano; Barbante, Carlo; Gambaro, Andrea

    2015-10-01

    The processes and transformations occurring in the Antarctic aerosol during atmospheric transport were described using selected sugars as source tracers. Monosaccharides (arabinose, fructose, galactose, glucose, mannose, ribose, xylose), disaccharides (sucrose, lactose, maltose, lactulose), alcohol-sugars (erythritol, mannitol, ribitol, sorbitol, xylitol, maltitol, galactitol) and anhydrosugars (levoglucosan, mannosan and galactosan) were measured in the Antarctic aerosol collected during four different sampling campaigns. For quantification, a sensitive high-pressure anion exchange chromatography was coupled with a single quadrupole mass spectrometer. The method was validated, showing good accuracy and low method quantification limits. This study describes the first determination of sugars in the Antarctic aerosol. The total mean concentration of sugars in the aerosol collected at the "Mario Zucchelli" coastal station was 140 pg m-3; as for the aerosol collected over the Antarctic plateau during two consecutive sampling campaigns, the concentration amounted to 440 and 438 pg m-3. The study of particle-size distribution allowed us to identify the natural emission from spores or from sea-spray as the main sources of sugars in the coastal area. The enrichment of sugars in the fine fraction of the aerosol collected on the Antarctic plateau is due to the degradation of particles during long-range atmospheric transport. The composition of sugars in the coarse fraction was also investigated in the aerosol collected during the oceanographic cruise.

  1. Towards a Circum-Antarctic Holocene Paleointensity Record

    NASA Astrophysics Data System (ADS)

    Brachfeld, S.; Kissel, C.; Laj, C.; Willmott, V.

    2005-12-01

    New Holocene geomagnetic paleointensity records have been constructed from the Western Antarctic Peninsula (WAP), Eastern Antarctic Peninsula (EAP), and from the East Antarctic Margin (EAM). The goal of this work is to develop Antarctic paleointensity reference curves for correlation and dating of Antarctic continental shelf sediments. Sediment sequences deposited in fjords and inner shelf basins contain Holocene sections of 3-meters to more than 20-meters, recording the last deglaciation, the paleohistory of ice shelves, and shifting paleoceanographic conditions. However, these records suffer from a lack biogenic calcite for radiocarbon dating. Diatomaceous mud contains sufficient acid insoluble organic matter (aiom) for radiocarbon dating and hence an independent chronology. However, laminated oozes yield shallow inclinations, hence the remanence vector is suspect. Bioturbated diatomaceous mud and diatom-poor muds yield excellent directional records and satisfy the criteria for magnetic uniformity, however the organic content is low and aiom dates can be problematic. Our paleointensity records show the broad pattern of higher intensity during the late Holocene, and lower intensity during the early to middle Holocene, similar to the sinusoidal intensity pattern seen in global absolute and relative paleointensity stacks. Several of the records contain 3 to 4 late Holocene peaks with 1000-year wavelengths that are similar in amplitude and duration to features seen in northern hemisphere lacustrine and marine records. Here we evaluate the local versus regional character of the Antarctic paleointensity records, and the consistency of aiom-dated versus paleointensity-tuned chronologies.

  2. Human Impacts on the Antarctic.

    ERIC Educational Resources Information Center

    Riddle, Martin

    1995-01-01

    Outlines the history of human activity in the Antarctic and discusses environmental impact, responsibility, and management in the Antarctic. Reviews the development of an informational database by the Australian National Antarctic Data Centre that will inform environmental research and decision making. (LZ)

  3. Carbonate Deposition on Antarctic Shelves

    NASA Astrophysics Data System (ADS)

    Frank, T. D.; James, N. P.; Malcolm, I.

    2011-12-01

    Limestones associated with glaciomarine deposits occur throughout the geologic record but remain poorly understood. The best-described examples formed during major ice ages of the Neoproterozoic and Late Paleozoic. Quaternary analogs on Antarctic shelves have received comparatively little study. Here, we report on the composition, spatial distribution, and stratigraphic context of carbonate sediments contained in piston cores from the Ross Sea. The goals of this work are to (1) document the nature and distribution of carbonate sediments on the Ross Sea continental shelf and (2) examine temporal relationships to Quaternary glaciation. Results will be used to develop criteria that will improve understanding of analogous deposits in the ancient record. All carbonate-rich intervals in piston cores from the Ross Rea, now housed at the Antarctic Marine Geology Research Facility at Florida State University, were examined and described in detail. Sediment samples were disaggregated and sieved into size fractions before description with paleontological analysis carried out on the coarsest size fraction (>250 microns). Carbonate-rich sediments are concentrated in the northwestern Ross Sea, along the distal margins of Mawson and Pennell Banks. Calcareous facies include a spectrum of lithologies that range from fossiliferous mud, sand, and gravel to skeletal floatstone-rudstone and bafflestone. Floatstone-rudstone and bafflestone is most abundant along western-facing slopes in areas protected from the Antarctic Coastal Current. Sand-prone facies dominate the tops of banks and mud-prone, often spicultic, facies occur in deeper areas. The carbonate factory is characterized by a low-diversity, heterozoan assemblage that is dominated by stylasterine hydrocorals, barnacles, and bryozoans. Molluscs and echinoids are present but not abundant. Planktic and benthic foraminifera are ubiquitous components of the sediment matrix, which is locally very rich in sponge spicules. Biota rarely

  4. Windblown Pliocene diatoms and East Antarctic Ice Sheet retreat.

    PubMed

    Scherer, Reed P; DeConto, Robert M; Pollard, David; Alley, Richard B

    2016-09-20

    Marine diatoms in tillites along the Transantarctic Mountains (TAMs) have been used to suggest a diminished East Antarctic Ice Sheet (EAIS) during Pliocene warm periods. Updated ice-sheet modelling shows significant Pliocene EAIS retreat, creating marine embayments into the Wilkes and Aurora basins that were conducive to high diatom productivity and rapid accumulation of diatomaceous sediments. Here we show that subsequent isostatic uplift exposed accumulated unconsolidated marine deposits to wind erosion. We report new atmospheric modelling utilizing Pliocene climate and derived Antarctic landscapes indicating that prevailing mid-altitude winds transported diatoms towards the TAMs, dominantly from extensive emerged coastal deposits of the Aurora Basin. This result unifies leading ideas from competing sides of a contentious debate about the origin of the diatoms in the TAMs and their link to EAIS history, supporting the view that parts of the EAIS are vulnerable to relatively modest warming, with possible implications for future sea-level rise.

  5. Windblown Pliocene diatoms and East Antarctic Ice Sheet retreat

    NASA Astrophysics Data System (ADS)

    Scherer, Reed P.; Deconto, Robert M.; Pollard, David; Alley, Richard B.

    2016-09-01

    Marine diatoms in tillites along the Transantarctic Mountains (TAMs) have been used to suggest a diminished East Antarctic Ice Sheet (EAIS) during Pliocene warm periods. Updated ice-sheet modelling shows significant Pliocene EAIS retreat, creating marine embayments into the Wilkes and Aurora basins that were conducive to high diatom productivity and rapid accumulation of diatomaceous sediments. Here we show that subsequent isostatic uplift exposed accumulated unconsolidated marine deposits to wind erosion. We report new atmospheric modelling utilizing Pliocene climate and derived Antarctic landscapes indicating that prevailing mid-altitude winds transported diatoms towards the TAMs, dominantly from extensive emerged coastal deposits of the Aurora Basin. This result unifies leading ideas from competing sides of a contentious debate about the origin of the diatoms in the TAMs and their link to EAIS history, supporting the view that parts of the EAIS are vulnerable to relatively modest warming, with possible implications for future sea-level rise.

  6. Windblown Pliocene diatoms and East Antarctic Ice Sheet retreat.

    PubMed

    Scherer, Reed P; DeConto, Robert M; Pollard, David; Alley, Richard B

    2016-01-01

    Marine diatoms in tillites along the Transantarctic Mountains (TAMs) have been used to suggest a diminished East Antarctic Ice Sheet (EAIS) during Pliocene warm periods. Updated ice-sheet modelling shows significant Pliocene EAIS retreat, creating marine embayments into the Wilkes and Aurora basins that were conducive to high diatom productivity and rapid accumulation of diatomaceous sediments. Here we show that subsequent isostatic uplift exposed accumulated unconsolidated marine deposits to wind erosion. We report new atmospheric modelling utilizing Pliocene climate and derived Antarctic landscapes indicating that prevailing mid-altitude winds transported diatoms towards the TAMs, dominantly from extensive emerged coastal deposits of the Aurora Basin. This result unifies leading ideas from competing sides of a contentious debate about the origin of the diatoms in the TAMs and their link to EAIS history, supporting the view that parts of the EAIS are vulnerable to relatively modest warming, with possible implications for future sea-level rise. PMID:27649516

  7. Windblown Pliocene diatoms and East Antarctic Ice Sheet retreat

    PubMed Central

    Scherer, Reed P.; DeConto, Robert M.; Pollard, David; Alley, Richard B.

    2016-01-01

    Marine diatoms in tillites along the Transantarctic Mountains (TAMs) have been used to suggest a diminished East Antarctic Ice Sheet (EAIS) during Pliocene warm periods. Updated ice-sheet modelling shows significant Pliocene EAIS retreat, creating marine embayments into the Wilkes and Aurora basins that were conducive to high diatom productivity and rapid accumulation of diatomaceous sediments. Here we show that subsequent isostatic uplift exposed accumulated unconsolidated marine deposits to wind erosion. We report new atmospheric modelling utilizing Pliocene climate and derived Antarctic landscapes indicating that prevailing mid-altitude winds transported diatoms towards the TAMs, dominantly from extensive emerged coastal deposits of the Aurora Basin. This result unifies leading ideas from competing sides of a contentious debate about the origin of the diatoms in the TAMs and their link to EAIS history, supporting the view that parts of the EAIS are vulnerable to relatively modest warming, with possible implications for future sea-level rise. PMID:27649516

  8. Navy closes Antarctic unit

    NASA Astrophysics Data System (ADS)

    Showstack, Randy

    After 42 years as a key participant in the United States Antarctic Program (USAP), the U.S. Navy held a ceremony on February 20 to commemorate the closing of its Naval Antarctic Support Unit stationed in New Zealand. The Navy originally had announced its decision to "disestablish" the unit in 1993, citing new global priorities with the end of the Cold War.The Navy will continue to provide limited flight support to the USAP through the end of the 1998-1999 austral research season.

  9. Antarctic terrestrial ecosystems

    SciTech Connect

    Walton, D.W.H.

    1987-01-01

    The Maritime and Continental Antarctic terrestrial ecosystems are considered in the context of environmental impacts - habitat destruction, alien introductions, and pollution. Four types of pollution are considered: nutrients, radionuclides, inert materials, and noxious chemicals. Their ability to recover from perturbation is discussed in the light of present scientific knowledge, and the methods used to control impacts are reviewed. It is concluded that techniques of waste disposal are still inadequate, adequate training in environmental and conservation principles for Antarctic personnel in many countries is lacking, and scientific investigations may be a much more serious threat than tourism to the integrity of these ecosystems. Some priorities crucial to future management are suggested.

  10. Ice scour disturbance in Antarctic waters.

    PubMed

    Smale, Dan A; Brown, Kirsty M; Barnes, David K A; Fraser, Keiron P P; Clarke, Andrew

    2008-07-18

    The West Antarctic Peninsula is one of the fastest warming regions on Earth, and, as a consequence, most maritime glaciers and ice shelves in the region have significantly retreated over the past few decades. We collected a multiyear data set on ice scouring frequency from Antarctica by using unique experimental markers and scuba diving surveys. We show that the annual intensity of ice scouring is negatively correlated with the duration of the winter fast ice season. Because fast ice extent and duration is currently in decline in the region after recent rapid warming, it is likely that marine benthic communities are set for even more scouring in the near future.

  11. Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters

    SciTech Connect

    Harris, Austin P.; Techtmann, Stephen M.; Stelling, Savannah C.; Utturkar, Sagar M.; Alshibli, Noor K.; Brown, Steven D.; Hazen, Terry C.

    2014-11-26

    We report the draft genome of Pseudoalteromonas sp. strain ND6B, which is able to grow with crude oil as a carbon source. Strain ND6B was isolated from eastern Mediterranean Sea deep water at a depth of 1,210 m. The genome of strain ND6B provides insight into the oil-degrading ability of the Pseudoalteromonas species.

  12. Diagnosing Antarctic Fog

    NASA Astrophysics Data System (ADS)

    Lazzara, M. A.

    2010-07-01

    Fog affects aviation and other logistical operations in the Antarctic; nevertheless limited studies have been conducted to understand fog behavior in this part of the world. A study has been conducted in the Ross Island region of Antarctica, the location of McMurdo Station and Scott Base - the main stations of the United States and New Zealand Antarctic programs, respectively. Using tools such as multi-channel satellites observations and supported by in situ radiosonde and ground-based automatic weather station observations, combined with back trajectory and mesoscale numerical models, discover that austral summer fog events are "advective" in temperament. The diagnosis finds a primary source region from the southeast over the Ross Ice Shelf (over 72% of the cases studied) while a minority of cases point toward a secondary fog source region to the north along the Scott Coast of the Ross Sea with influences from the East Antarctic Plateau. Part of this examination confirms existing anecdotes from forecasters and weather observers, while refuting others about fog and its behavior in this environment. This effort marks the beginning of our understanding of Antarctic fog behavior.

  13. Production of the Bioactive Compounds Violacein and Indolmycin Is Conditional in a maeA Mutant of Pseudoalteromonas luteoviolacea S4054 Lacking the Malic Enzyme

    PubMed Central

    Thøgersen, Mariane S.; Delpin, Marina W.; Melchiorsen, Jette; Kilstrup, Mogens; Månsson, Maria; Bunk, Boyke; Spröer, Cathrin; Overmann, Jörg; Nielsen, Kristian F.; Gram, Lone

    2016-01-01

    It has previously been reported that some strains of the marine bacterium Pseudoalteromonas luteoviolacea produce the purple bioactive pigment violacein as well as the antibiotic compound indolmycin, hitherto only found in Streptomyces. The purpose of the present study was to determine the relative role of each of these two compounds as antibacterial compounds in P. luteoviolacea S4054. Using Tn10 transposon mutagenesis, a mutant strain that was significantly reduced in violacein production in mannose-containing substrates was created. Full genome analyses revealed that the vio-biosynthetic gene cluster was not interrupted by the transposon; instead the insertion was located to the maeA gene encoding the malic enzyme. Supernatant of the mutant strain inhibited Vibrio anguillarum and Staphylococcus aureus in well diffusion assays and in MIC assays at the same level as the wild type strain. The mutant strain killed V. anguillarum in co-culture experiments as efficiently as the wild type. Using UHPLC-UV/Vis analyses, we quantified violacein and indolmycin, and the mutant strain only produced 7–10% the amount of violacein compared to the wild type strain. In contrast, the amount of indolmycin produced by the mutant strain was about 300% that of the wild type. Since inhibition of V. anguillarum and S. aureus by the mutant strain was similar to that of the wild type, it is concluded that violacein is not the major antibacterial compound in P. luteoviolacea. We furthermore propose that production of violacein and indolmycin may be metabolically linked and that yet unidentified antibacterial compound(s) may be play a role in the antibacterial activity of P. luteoviolacea. PMID:27695447

  14. Production of the Bioactive Compounds Violacein and Indolmycin Is Conditional in a maeA Mutant of Pseudoalteromonas luteoviolacea S4054 Lacking the Malic Enzyme

    PubMed Central

    Thøgersen, Mariane S.; Delpin, Marina W.; Melchiorsen, Jette; Kilstrup, Mogens; Månsson, Maria; Bunk, Boyke; Spröer, Cathrin; Overmann, Jörg; Nielsen, Kristian F.; Gram, Lone

    2016-01-01

    It has previously been reported that some strains of the marine bacterium Pseudoalteromonas luteoviolacea produce the purple bioactive pigment violacein as well as the antibiotic compound indolmycin, hitherto only found in Streptomyces. The purpose of the present study was to determine the relative role of each of these two compounds as antibacterial compounds in P. luteoviolacea S4054. Using Tn10 transposon mutagenesis, a mutant strain that was significantly reduced in violacein production in mannose-containing substrates was created. Full genome analyses revealed that the vio-biosynthetic gene cluster was not interrupted by the transposon; instead the insertion was located to the maeA gene encoding the malic enzyme. Supernatant of the mutant strain inhibited Vibrio anguillarum and Staphylococcus aureus in well diffusion assays and in MIC assays at the same level as the wild type strain. The mutant strain killed V. anguillarum in co-culture experiments as efficiently as the wild type. Using UHPLC-UV/Vis analyses, we quantified violacein and indolmycin, and the mutant strain only produced 7–10% the amount of violacein compared to the wild type strain. In contrast, the amount of indolmycin produced by the mutant strain was about 300% that of the wild type. Since inhibition of V. anguillarum and S. aureus by the mutant strain was similar to that of the wild type, it is concluded that violacein is not the major antibacterial compound in P. luteoviolacea. We furthermore propose that production of violacein and indolmycin may be metabolically linked and that yet unidentified antibacterial compound(s) may be play a role in the antibacterial activity of P. luteoviolacea.

  15. Isolation of moderately halophilic pseudoalteromonas producing extracellular hydrolytic enzymes from persian gulf.

    PubMed

    Ardakani, M Roayaie; Poshtkouhian, A; Amoozegar, M A; Zolgharnein, H

    2012-03-01

    Extracellular hydrolytic enzymes such as amylases, proteases, lipases and DNases have quite diverse potential usages in different areas such as food industry, biomedical sciences and chemical industries, also it would be of great importance to have available enzymes showing optimal activities at different values of salt concentrations and temperature. Halophiles are the most likely source of such enzymes, because not only their enzymes are salt-tolerant, but many are also thermotolerant. The purpose of this study was isolation of hydrolytic extracellular enzyme producing halophilic bacteria from water and sediment of the Persian Gulf. Isolated bacteria from water and sediment were inoculated in media with concentration of 0-20% NaCl to determine the optimum salt concentration for growth, isolates were also inoculated in 4 types of solid medium containing substrates of 3 extracellular hydrolytic enzymes including amylase, Protease and Lipase, to determine the quantitative detection of enzyme production, selected strains after more accurate physiological and biochemical studies were identified regarding phylogeny and molecular characteristics using 16S rRNA technique. Isolated enzyme producing bacteria belong to Pseudoalteromonas genera. PMID:23450116

  16. Anti-biofilm activity of Pseudoalteromonas flavipulchra SktPp1 against Serratia marcescens SMJ-11

    NASA Astrophysics Data System (ADS)

    Iqbal, Faiq; Usup, Gires; Ahmad, Asmat

    2015-09-01

    This study aimed to examine the anti-biofilm activity of Pseudoalteromonas flavipulchra SktPp1 crude extract against the biofilm producer, Serratia marcescens. The crude extract of P. flavipulchra SktPp1 was extracted with ethyl acetate. The sub-minimum inhibitory concentration (MIC), 0.1 mg/ml, has been used in this study. The anti-biofilm activity of P. flavipulchra SktPp1 crude extract was assessed against the biofilm of S. marcescens using the crystal violet assay. The growth curve has been used as the indicator of the effect of crude extracts to bacterial growth. The sub-MIC crude extract was tested against two of S. marcescens virulence factors, including the swarming ability and production of prodigiosin using the swarming assay and prodigiosin assay. The growth curves of S. marcescens indicated that the sub-MIC concentration of crude extract did not affect the growth of S. marcescens. The production of prodigiosin was reduced by 44%. The diameter of the swarming area was reduced from 8.7 cm to 0.8 cm. The sub-MIC crude extract inhibits 26.9% of the biofilm production in S. marcescens. This crude extract lost its activity at 50°C and above. In conclusion, crude extract of P. flavipulchra SktPp1 has the ability to inhibit S. marcescens SMJ-11 biofilm formation.

  17. Advance of East Antarctic outlet glaciers during the Hypsithermal: Implications for the volume state of the Antarctic ice sheet under global warming

    SciTech Connect

    Domack, E.W. ); Jull, A.J.T. ); Nakao, Seizo )

    1991-11-01

    The authors present the first circum-East Antarctic chronology for the Holocene, based on 17 radiocarbon dates generated by the accelerator method. Marine sediments form around East Antarctica contain a consistent, high-resolution record of terrigenous (ice-proximal) and biogenic (open-marine) sedimentation during Holocene time. This record demonstrates that biogenic sedimentation beneath the open-marine environment on the continental shelf has been restricted to approximately the past 4 ka, whereas a period of terrigenous sedimentation related to grounding line advance of ice tongues and ice shelves took place between 7 and 4 ka. An earlier period of open-marine (biogenic sedimentation) conditions following the late Pleistocene glacial maximum is recognized from the Prydz Bay (Ocean Drilling Program) record between 10.7 and 7.3 ka. Clearly, the response of outlet systems along the periphery of the East Antarctic ice sheet during the mid-Holocene was expansion. This may have been a direct consequence of climate warming during an Antarctic Hypsithermal. Temperature-accumulation relations for the Antarctic indicate that warming will cause a significant increase in accumulation rather than in ablation. Models that predict a positive mass balance (growth) of the Antarctic ice sheet under global warming are supported by the mid-Holocene data presented herein.

  18. Evidence for an extensive Antarctic Ice Sheet by 37 Ma

    NASA Astrophysics Data System (ADS)

    Carter, Andrew; Riley, Teal; Hillenbrand, Claus-Dieter; Rittner, Martin

    2016-04-01

    We present observational evidence that both the East and West Antarctic ice sheets had expanded to the coast by 37 Ma, predating, by at least 3 Myr, a major drop in atmospheric CO2 at the Eocene-Oligocene boundary widely considered responsible for Antarctic Ice Sheet expansion. Our evidence comes from the provenance (geochronology, thermochronometry, mineralogy) of iceberg-rafted debris identified in Late Eocene marine sediments from (ODP) Leg 113 Site 696 in the NW Weddell Sea. The existence of an significant Antarctic Ice Sheet in a Late Eocene high pCO2 world calls into question the role of atmospheric CO2 concentrations as the dominant mechanism for ice sheet expansion and whether topography and ocean circulation only play a secondary role.

  19. Detection of a novel genotype of Cryptosporidium in Antarctic pinnipeds.

    PubMed

    Rengifo-Herrera, Claudia; Ortega-Mora, Luis Miguel; Gómez-Bautista, Mercedes; García-Peña, Francisco Javier; García-Párraga, Daniel; Pedraza-Díaz, Susana

    2013-01-16

    A study was conducted to investigate the presence of Cryptosporidium and Giardia in Antarctic marine mammals. A total of 270 faecal samples from different species of pinnipeds from different locations in the South Shetland Islands and Antarctic Peninsula were analysed by immunofluorescence microscopy and PCR. Cryptosporidium was detected by PCR in three samples from Southern elephant seals (Mirounga leonina) and 2 Weddell seals (Leptonychotes weddellii). However, no oocysts were observed in any of the samples by immunofluorescence microscopy. Molecular characterisation of the isolates, using the 18S rDNA, the HSP70 and the COWP loci, revealed the presence of a Cryptosporidium sp., previously reported from an Antarctic Southern elephant seal, in the elephant seals and a novel genotype in Weddell seals. Giardia could not be detected in any of the samples analysed. PMID:23021408

  20. Unveiling the Antarctic subglacial landscape.

    NASA Astrophysics Data System (ADS)

    Warner, Roland; Roberts, Jason

    2010-05-01

    Better knowledge of the subglacial landscape of Antarctica is vital to reducing uncertainties regarding prediction of the evolution of the ice sheet. These uncertainties are associated with bedrock geometry for ice sheet dynamics, including possible marine ice sheet instabilities and subglacial hydrological pathways (e.g. Wright et al., 2008). Major collaborative aerogeophysics surveys motivated by the International Polar Year (e.g. ICECAP and AGAP), and continuing large scale radar echo sounding campaigns (ICECAP and NASA Ice Bridge) are significantly improving the coverage. However, the vast size of Antarctica and logistic difficulties mean that data gaps persist, and ice thickness data remains spatially inhomogeneous. The physics governing large scale ice sheet flow enables ice thickness, and hence bedrock topography, to be inferred from knowledge of ice sheet surface topography and considerations of ice sheet mass balance, even in areas with sparse ice thickness measurements (Warner and Budd, 2000). We have developed a robust physically motivated interpolation scheme, based on these methods, and used it to generate a comprehensive map of Antarctic bedrock topography, using along-track ice thickness data assembled for the BEDMAP project (Lythe et al., 2001). This approach reduces ice thickness biases, compared to traditional inverse distance interpolation schemes which ignore the information available from considerations of ice sheet flow. In addition, the use of improved balance fluxes, calculated using a Lagrangian scheme, eliminates the grid orientation biases in ice fluxes associated with finite difference methods (Budd and Warner, 1996, Le Brocq et al., 2006). The present map was generated using a recent surface DEM (Bamber et al., 2009, Griggs and Bamber, 2009) and accumulation distribution (van de Berg et al., 2006). Comparing our results with recent high resolution regional surveys gives confidence that all major subglacial topographic features are

  1. Projected changes of Antarctic krill habitat by the end of the 21st century

    NASA Astrophysics Data System (ADS)

    Piñones, Andrea; Fedorov, Alexey V.

    2016-08-01

    Climate change is rapidly shaping the living environment of the most abundant keystone species of the Antarctic marine food web, Antarctic krill. Projected future changes for the krill habitat include a sustained increase in ocean temperature and changes in sea ice and chlorophyll a. Here we investigate how these factors affect the early life history of krill and identify the regions around Antarctica where the impact will be greatest. Our tool is a temperature-dependent krill growth model forced by data from comprehensive greenhouse warming simulations. We find that by the year 2100 localized regions along the western Weddell Sea, isolated areas of the Indian Antarctic , and the Amundsen/Bellingshausen Sea will support successful spawning habitats for krill. The failure of potentially successful spawning will have a strong impact on the already declining adult populations with consequences for the Antarctic marine food web, having both ecological and commercial ramifications.

  2. Antarctic Porifera database from the Spanish benthic expeditions.

    PubMed

    Rios, Pilar; Cristobo, Javier

    2014-01-01

    THE INFORMATION ABOUT THE SPONGES IN THIS DATASET IS DERIVED FROM THE SAMPLES COLLECTED DURING FIVE SPANISH ANTARCTIC EXPEDITIONS: Bentart 94, Bentart 95, Gebrap 96, Ciemar 99/00 and Bentart 2003. Samples were collected in the Antarctic Peninsula and Bellingshausen Sea at depths ranging from 4 to 2044 m using various sampling gears. The Antarctic Porifera database from the Spanish benthic expeditions is unique as it provides information for an under-explored region of the Southern Ocean (Bellingshausen Sea). It fills an information gap on Antarctic deep-sea sponges, for which there were previously very few data. This phylum is an important part of the Antarctic biota and plays a key role in the structure of the Antarctic marine benthic community due to its considerable diversity and predominance in different areas. It is often a dominant component of Southern Ocean benthic communities. The quality of the data was controlled very thoroughly with GPS systems onboard the R/V Hesperides and by checking the data against the World Porifera Database (which is part of the World Register of Marine Species, WoRMS). The data are therefore fit for completing checklists, inclusion in biodiversity pattern analysis and niche modelling. The authors can be contacted if any additional information is needed before carrying out detailed biodiversity or biogeographic studies. The dataset currently contains 767 occurrence data items that have been checked for systematic reliability. This database is not yet complete and the collection is growing. Specimens are stored in the author's collection at the Spanish Institute of Oceanography (IEO) in the city of Gijón (Spain). The data are available in GBIF.

  3. Antarctic Porifera database from the Spanish benthic expeditions

    PubMed Central

    Rios, Pilar; Cristobo, Javier

    2014-01-01

    Abstract The information about the sponges in this dataset is derived from the samples collected during five Spanish Antarctic expeditions: Bentart 94, Bentart 95, Gebrap 96, Ciemar 99/00 and Bentart 2003. Samples were collected in the Antarctic Peninsula and Bellingshausen Sea at depths ranging from 4 to 2044 m using various sampling gears. The Antarctic Porifera database from the Spanish benthic expeditions is unique as it provides information for an under-explored region of the Southern Ocean (Bellingshausen Sea). It fills an information gap on Antarctic deep-sea sponges, for which there were previously very few data. This phylum is an important part of the Antarctic biota and plays a key role in the structure of the Antarctic marine benthic community due to its considerable diversity and predominance in different areas. It is often a dominant component of Southern Ocean benthic communities. The quality of the data was controlled very thoroughly with GPS systems onboard the R/V Hesperides and by checking the data against the World Porifera Database (which is part of the World Register of Marine Species, WoRMS). The data are therefore fit for completing checklists, inclusion in biodiversity pattern analysis and niche modelling. The authors can be contacted if any additional information is needed before carrying out detailed biodiversity or biogeographic studies. The dataset currently contains 767 occurrence data items that have been checked for systematic reliability. This database is not yet complete and the collection is growing. Specimens are stored in the author’s collection at the Spanish Institute of Oceanography (IEO) in the city of Gijón (Spain). The data are available in GBIF. PMID:24843257

  4. Differences between Antarctic and non-Antarctic meteorites: An assessment

    SciTech Connect

    Koeberl, C. ); Cassidy, W.A. )

    1991-01-01

    The discovery of a statistically significant number of meteorites in Antarctica over the past 20 years has posed many questions. One of the most intriguing suggestions that came up during the study of the Antarctic samples was that there might be a difference between the parent populations of Antarctic and non-Antarctic samples was that there might be a difference between the parent populations of Antarctic and non-Antarctic meteorites. This interpretation was put forward after the detection of a significant difference in the abundances of volatile and mobile trace elements in H, L, and C chondrites and achondrites. Other major differences include the occurrence of previously rare or unknown meteorites, different meteorite-type frequencies, petrographic characteristics, oxygen isotopic compositions, and smaller average masses. Not all differences between the Antarctic and non-Antarctic meteorite populations can be explained by weathering, pairing, or different collection procedures. Variable trace element abundances and distinct differences in the thermal history and thermoluminescence characteristics have to be interpreted as being pre-terrestrial in origin. Such differences imply the existence of meteoroid streams, whose existence poses problems in the framework of our current knowledge of celestial mechanics. In this paper we summarize the contributions in this series and provide a review of the current state of the question for the reality and cause of differences between Antarctic and non-Antarctic meteorites.

  5. Relative changes in krill abundance inferred from Antarctic fur seal.

    PubMed

    Huang, Tao; Sun, Liguang; Stark, John; Wang, Yuhong; Cheng, Zhongqi; Yang, Qichao; Sun, Song

    2011-01-01

    Antarctic krill Euphausia superba is a predominant species in the Southern Ocean, it is very sensitive to climate change, and it supports large stocks of fishes, seabirds, seals and whales in Antarctic marine ecosystems. Modern krill stocks have been estimated directly by net hauls and acoustic surveys; the historical krill density especially the long-term one in the Southern Ocean, however, is unknown. Here we inferred the relative krill population changes along the West Antarctic Peninsula (WAP) over the 20th century from the trophic level change of Antarctic fur seal Arctocephalus gazella using stable carbon (δ(13)C) and nitrogen (δ(15)N) isotopes of archival seal hairs. Since Antarctic fur seals feed preferentially on krill, the variation of δ(15)N in seal hair indicates a change in the proportion of krill in the seal's diets and thus the krill availability in local seawater. For the past century, enriching fur seal δ(15)N values indicated decreasing krill availability. This is agreement with direct observation for the past ∼30 years and suggests that the recently documented decline in krill populations began in the early parts of the 20th century. This novel method makes it possible to infer past krill population changes from ancient tissues of krill predators.

  6. Relative Changes in Krill Abundance Inferred from Antarctic Fur Seal

    PubMed Central

    Huang, Tao; Sun, Liguang; Stark, John; Wang, Yuhong; Cheng, Zhongqi; Yang, Qichao; Sun, Song

    2011-01-01

    Antarctic krill Euphausia superba is a predominant species in the Southern Ocean, it is very sensitive to climate change, and it supports large stocks of fishes, seabirds, seals and whales in Antarctic marine ecosystems. Modern krill stocks have been estimated directly by net hauls and acoustic surveys; the historical krill density especially the long-term one in the Southern Ocean, however, is unknown. Here we inferred the relative krill population changes along the West Antarctic Peninsula (WAP) over the 20th century from the trophic level change of Antarctic fur seal Arctocephalus gazella using stable carbon (δ13C) and nitrogen (δ15N) isotopes of archival seal hairs. Since Antarctic fur seals feed preferentially on krill, the variation of δ15N in seal hair indicates a change in the proportion of krill in the seal's diets and thus the krill availability in local seawater. For the past century, enriching fur seal δ15N values indicated decreasing krill availability. This is agreement with direct observation for the past ∼30 years and suggests that the recently documented decline in krill populations began in the early parts of the 20th century. This novel method makes it possible to infer past krill population changes from ancient tissues of krill predators. PMID:22087294

  7. Antarctic sea ice change and variability - Physical and ecological implications

    NASA Astrophysics Data System (ADS)

    Massom, Robert A.; Stammerjohn, Sharon E.

    2010-08-01

    Although Antarctic sea ice is undergoing a slight increase in overall extent, major regional changes are occurring in its spatio-temporal characteristics (most notably in sea ice seasonality). Biologically significant aspects of Antarctic sea ice are evaluated, emphasising the importance of scale and thermodynamics versus dynamics. Changing sea ice coverage is having major direct and indirect though regionally-dependent effects on ecosystem structure and function, with the most dramatic known effects to date occurring in the West Antarctic Peninsula region. There is mounting evidence that loss of sea ice has affected multiple levels of the marine food web in a complex fashion and has triggered cascading effects. Impacts on primary production, Antarctic krill, fish, marine mammals and birds are assessed, and are both negative and positive. The review includes recent analysis of change/variability in polynyas and fast ice, and also highlights the significance of extreme events (which have paradoxical impacts). Possible future scenarios are investigated in the light of the predicted decline in sea ice by 2100 e.g. increased storminess/waviness, numbers of icebergs and snowfall. Our current lack of knowledge on many aspects of sea ice-related change and biological response is emphasised.

  8. Detection of Toxoplasma gondii antibodies in Antarctic pinnipeds.

    PubMed

    Rengifo-Herrera, Claudia; Ortega-Mora, Luis Miguel; Alvarez-García, Gema; Gómez-Bautista, Mercedes; García-Párraga, Daniel; García-Peña, Francisco Javier; Pedraza-Díaz, Susana

    2012-11-23

    The presence of Toxoplasma gondii antibodies was investigated in Antarctic marine mammals. Two hundred and eleven sera from different species of pinnipeds collected in years 2007, 2010 and 2011 from different locations in the South Shetland Islands and Antarctic Peninsula were analysed using a commercially available agglutination test kit. The presence of antibodies (titres ≥ 1:25) against T. gondii was detected in a total of 28 animals (13.3%). Amongst animal species, percentages of detection were higher in Southern elephant seals (Mirounga leonina) (76.9%; 10/13) followed by Weddell seals (Leptonychotes weddellii) (41.9%; 13/31). Antibodies were also found in 4 of 165 (2.4%) Antarctic fur seals (Arctocephalus gazella) and 1 of 2 Crabeater seals (Lobodon carcinophaga). Highest titres (1:100-1:800) were also observed in Southern elephant seals and Weddell seals. To the best of our knowledge this is the first report on the detection of antibodies against T. gondii in Antarctic marine mammals.

  9. Antarctic science preserve polluted

    NASA Astrophysics Data System (ADS)

    Simarski, Lynn Teo

    Geophysicists are alarmed at the electromagnetic pollution of a research site in the Antarctic specifically set aside to study the ionosphere and magnetosphere. A private New Zealand communications company called Telecom recently constructed a satellite ground station within the boundaries of this Site of Special Scientific Interest (SSSI), protected since the mid-1970s. The placement of a commercial facility within this site sets an ominous precedent not only for the sanctity of other SSSIs, but also for Specially Protected Areas—preserves not even open to scientific research, such as certain penguin rookeries.The roughly rectangular, one-by-one-half mile site, located at Arrival Heights not far from McMurdo Station, is one of a number of areas protected under the Antarctic treaty for designated scientific activities. Many sites are set aside for geological or biological research, but this is the only one specifically for physical science.

  10. The Antarctic Planet Interferometer

    NASA Technical Reports Server (NTRS)

    Swain, Mark R.; Walker, Christopher K.; Traub, Wesley A.; Storey, John W.; CoudeduForesto, Vincent; Fossat, Eric; Vakili, Farrok; Stark, Anthony A.; Lloyd, James P.; Lawson, Peter R.; Burrows, Adam S.; Ireland, Michael; Millan-Gabet, Rafael; vanBelle, Gerard T.; Lane, Benjamin; Vasisht, Gautam; Travouillon, Tony

    2004-01-01

    The Antarctic Planet Interferometer is an instrument concept designed to detect and characterize extrasolar planets by exploiting the unique potential of the best accessible site on earth for thermal infrared interferometry. High-precision interferometric techniques under development for extrasolar planet detection and characterization (differential phase, nulling and astrometry) all benefit substantially from the slow, low-altitude turbulence, low water vapor content, and low temperature found on the Antarctic plateau. At the best of these locations, such as the Concordia base being developed at Dome C, an interferometer with two-meter diameter class apertures has the potential to deliver unique science for a variety of topics, including extrasolar planets, active galactic nuclei, young stellar objects, and protoplanetary disks.

  11. Viruses in Antarctic lakes

    NASA Technical Reports Server (NTRS)

    Kepner, R. L. Jr; Wharton, R. A. Jr; Suttle, C. A.; Wharton RA, J. r. (Principal Investigator)

    1998-01-01

    Water samples collected from four perennially ice-covered Antarctic lakes during the austral summer of 1996-1997 contained high densities of extracellular viruses. Many of these viruses were found to be morphologically similar to double-stranded DNA viruses that are known to infect algae and protozoa. These constitute the first observations of viruses in perennially ice-covered polar lakes. The abundance of planktonic viruses and data suggesting substantial production potential (relative to bacteria] secondary and photosynthetic primary production) indicate that viral lysis may be a major factor in the regulation of microbial populations in these extreme environments. Furthermore, we suggest that Antarctic lakes may be a reservoir of previously undescribed viruses that possess novel biological and biochemical characteristics.

  12. Antarctic Meteorite Newsletter

    NASA Technical Reports Server (NTRS)

    Lindstrom, Marilyn

    2000-01-01

    This newsletter contains something for everyone! It lists classifications of about 440 meteorites mostly from the 1997 and 1998 ANSMET (Antarctic Search for Meteorites) seasons. It also gives descriptions of about 45 meteorites of special petrologic type. These include 1 iron, 17 chondrites (7 CC, 1 EC, 9 OC) and 27 achondrites (25 HED, UR). Most notable are an acapoloite (GRA98028) and an olivine diogenite (GRA98108).

  13. Thermoluminescence and Antarctic meteorites

    NASA Technical Reports Server (NTRS)

    Sears, D. W. G.; Hasan, F. A.

    1986-01-01

    The level of natural thermoluminescence (TL) in meteorites is the result of competition between build-up, due to exposure to cosmic radiation, and thermal decay. Antarctic meteorites tend to have lower natural TL than non-Antarctic meteorites because of their generally larger terrestrial ages. However, since a few observed falls have low TL due to a recent heating event, such as passage within approximately 0.7 astronomical units of the Sun, this could also be the case for some Antarctic meteorites. Dose rate variations due to shielding, heating during atmospheric passage, and anomalous fading also cause natural TL variations, but the effects are either relatively small, occur infrequently, or can be experimentally circumvented. The TL sensitivity of meteorites reflects the abundance and nature of the feldspar. Thus intense shock, which destroys feldspar, causes the TL sensitivity to decrease by 1 to 2 orders of magnitude, while metamorphism, which generates feldspar through the devitrification of glass, causes TL sensitivity to increase by a factor of approximately 10000. The TL-metamorphism relationship is particularly strong for the lowest levels of metamorphism. The order-disorder transformation in feldspar also affect the TL emission characteristics and thus TL provides a means of paleothermometry.

  14. Antarctic Photochemistry: Uncertainty Analysis

    NASA Technical Reports Server (NTRS)

    Stewart, Richard W.; McConnell, Joseph R.

    1999-01-01

    Understanding the photochemistry of the Antarctic region is important for several reasons. Analysis of ice cores provides historical information on several species such as hydrogen peroxide and sulfur-bearing compounds. The former can potentially provide information on the history of oxidants in the troposphere and the latter may shed light on DMS-climate relationships. Extracting such information requires that we be able to model the photochemistry of the Antarctic troposphere and relate atmospheric concentrations to deposition rates and sequestration in the polar ice. This paper deals with one aspect of the uncertainty inherent in photochemical models of the high latitude troposphere: that arising from imprecision in the kinetic data used in the calculations. Such uncertainties in Antarctic models tend to be larger than those in models of mid to low latitude clean air. One reason is the lower temperatures which result in increased imprecision in kinetic data, assumed to be best characterized at 298K. Another is the inclusion of a DMS oxidation scheme in the present model. Many of the rates in this scheme are less precisely known than are rates in the standard chemistry used in many stratospheric and tropospheric models.

  15. [Helminths of Antarctic fishes].

    PubMed

    Rocka, Anna

    2008-01-01

    Antarctic fishes are represented by sharks, skates (Chondrichthyes) and bony fishes (Teleostei). Teleosts play an important role in the completion of life cycles of many helminth species. They serve as either definitive or intermediate and paratenic hosts. Chondrichthyes are definitive hosts only. Seventy three helminth species occur as the adult stage in fishes: Digenea (45), Cestoda (14), Nematoda (6), Acanthocephala (8), Also, 11 larval stages of Cestoda (7) and Nematoda (4) are known, together with 7 species of Acanthocephala in the cystacanth stage. One digenean species, Otodistomum cestoides, matures in skates. Among cestodes maturing in fishes only one, Parabothriocephalus johnstoni, occurs in a bony fish, Macrourus whitsoni. Antarctic Chondrichthyes are not infected with nematodes and acanthocephalans. Cestode larvae from teleosts belong to Tetraphyllidea (parasites of skates), and Tetrabothriidae and Diphyllobothriidae (parasites of birds and mammals). Larval nematodes represent Anisakidae, parasites of fishes, birds and mammals. Acanthocephalan cystacanths mature in pinnipeds and birds. The majority of parasites maturing in Antarctic fishes are endemics. Only 4 digenean and one nematode species, Hysterothylacium aduncum, are cosmopolitan. All acanthocephalans, almost all digeneans, the majority of cestodes and some nematodes occur mainly or exclusively in benthic fishes. Specificity of the majority of helminths utilizing teleosts as intermediate and/or paratenic hosts is low. Among parasites using fishes as definitive hosts, all Cestoda, most Digenea and Nematoda, and almost all Acanthocephala have a range of hosts restricted to one order or even to 1-2 host species. PMID:18664106

  16. Entanglement of Antarctic fur seals at Bird Island, South Georgia.

    PubMed

    Waluda, Claire M; Staniland, Iain J

    2013-09-15

    Between November 1989 and March 2013, 1033 Antarctic fur seals Arctocephalus gazella were observed entangled in marine debris at Bird Island, South Georgia. The majority of entanglements involved plastic packaging bands (43%), synthetic line (25%) or fishing net (17%). Juvenile male seals were the most commonly entangled (44%). A piecewise regression analysis showed that a single breakpoint at 1994 gave the best description of inter-annual variability in the data, with higher levels of entanglements prior to 1994 (mean=110±28) followed by persistent lower levels (mean=28±4). Records of entanglements from other sites monitored in the Scotia Sea are also presented. Legislation imposed by the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR) has, to a certain extent, been effective, but persistent low levels of seal entanglements are still a cause for concern at South Georgia. PMID:23915979

  17. A transcriptome resource for the Antarctic pteropod Limacina helicina antarctica.

    PubMed

    Johnson, Kevin M; Hofmann, Gretchen E

    2016-08-01

    The pteropod Limacina helicina antarctica is a dominant member of the zooplankton assemblage in the Antarctic marine ecosystem, and is part of a relatively simple food web in nearshore marine Antarctic waters. As a shelled pteropod, Limacina has been suggested as a candidate sentinel organism for the impacts of ocean acidification, due to the potential for shell dissolution in undersaturated waters. In this study, our goal was to develop a transcriptomic resource for Limacina that would support mechanistic studies to explore the physiological response of Limacina to abiotic stressors such as ocean acidification and ocean warming. To this end, RNA sequencing libraries were prepared from Limacina that had been exposed to a range of pH levels and an elevated temperature to maximize the diversity of expressed genes. RNA sequencing (RNA-seq) was conducted on an Illumina NextSeq500 which produced 339,000,000 150bp paired-end reads. The de novo transcriptome was produced using Trinity and annotation of the assembled transcriptome resulted in the identification of 81,229 transcripts in 137 KEGG pathways. This RNA-seq effort resulted in a transcriptome for the Antarctic pteropod, Limacina helicina antarctica, that is a major resource for an international marine science research community studying these pelagic molluscs in a global change context.

  18. A transcriptome resource for the Antarctic pteropod Limacina helicina antarctica.

    PubMed

    Johnson, Kevin M; Hofmann, Gretchen E

    2016-08-01

    The pteropod Limacina helicina antarctica is a dominant member of the zooplankton assemblage in the Antarctic marine ecosystem, and is part of a relatively simple food web in nearshore marine Antarctic waters. As a shelled pteropod, Limacina has been suggested as a candidate sentinel organism for the impacts of ocean acidification, due to the potential for shell dissolution in undersaturated waters. In this study, our goal was to develop a transcriptomic resource for Limacina that would support mechanistic studies to explore the physiological response of Limacina to abiotic stressors such as ocean acidification and ocean warming. To this end, RNA sequencing libraries were prepared from Limacina that had been exposed to a range of pH levels and an elevated temperature to maximize the diversity of expressed genes. RNA sequencing (RNA-seq) was conducted on an Illumina NextSeq500 which produced 339,000,000 150bp paired-end reads. The de novo transcriptome was produced using Trinity and annotation of the assembled transcriptome resulted in the identification of 81,229 transcripts in 137 KEGG pathways. This RNA-seq effort resulted in a transcriptome for the Antarctic pteropod, Limacina helicina antarctica, that is a major resource for an international marine science research community studying these pelagic molluscs in a global change context. PMID:27157132

  19. International Workshop on Antarctic Meteorites

    NASA Technical Reports Server (NTRS)

    Annexstad, J. O.; Schultz, L.; Waenke, H.

    1986-01-01

    Topics addressed include: meteorite concentration mechanisms; meteorites and the Antarctic ice sheet; iron meteorites; iodine overabundance in meteorites; entrainment, transport, and concentration of meteorites in polar ice sheets; weathering of stony meteorites; cosmic ray records; radiocarbon dating; element distribution and noble gas isotopic abundances in lunar meteorites; thermoanalytical characterization; trace elements; thermoluminescence; parent sources; and meteorite ablation and fusion spherules in Antarctic ice.

  20. Improving Antarctic infrastructure

    NASA Astrophysics Data System (ADS)

    Showstack, Randy

    2012-07-01

    Noting that U.S. activities in Antarctica “are very well managed but suffer from an aging infrastructure, lack of a capital budget, and the effects of operating in an extremely unforgiving environment,” a 23 July report from the U.S. Antarctic Program Blue Ribbon Panel recommends a number of measures to improve the infrastructure, logistics, and other concerns. The panel's recommendations include continued use of the McMurdo, South Pole, and Palmer stations as the primary U.S. science and logistics hubs in Antarctica—because there are no reasonable alternatives, according to the panel—while upgrading or replacing some facilities, restoring the U.S. polar ocean feet, implementing state of-the-art logistics and transportation support, and establishing a long-term facilities capital plan and budget for the U.S. Antarctic Program. “The essence of our findings is that the lack of capital budgeting has placed operations at McMurdo, and to a somewhat lesser extent at Palmer Station, in unnecessary jeopardy—at least in terms of prolonged inefficiency due to deteriorating or otherwise inadequate physical assets,” the panel wrote in the cover letter accompanying the report entitled, More and Better Science in Antarctica Through Increased Logistical Effectiveness. “The Antarctica Blue Ribbon Panel encourages us to take a hard look at how we support Antarctic science and to make the structural changes, however difficult in the current fiscal environment, that will allow us to do more science in the future,” said U.S. National Science Foundation (NSF) Director Subra Suresh.

  1. Biodiversity and biogeography of Antarctic and sub-Antarctic mollusca

    NASA Astrophysics Data System (ADS)

    Linse, Katrin; Griffiths, Huw J.; Barnes, David K. A.; Clarke, Andrew

    2006-04-01

    For many decades molluscan data have been critical to the establishment of the concept of a global-scale increase in species richness from the poles to the equator. Low polar diversity is key to this latitudinal cline in diversity. Here we investigate richness patterns in the two largest classes of molluscs at both local and regional scales throughout the Southern Ocean. We show that biodiversity is very patchy in the Southern Ocean (at the 1000-km scale) and test the validity of historical biogeographic sub-regions and provinces. We used multivariate analysis of biodiversity patterns at species, genus and family levels to define richness hotspots within the Southern Ocean and transition areas. This process identified the following distinct sub-regions in the Southern Ocean: Antarctic Peninsula, Weddell Sea, East Antarctic—Dronning Maud Land, East Antarctic—Enderby Land, East Antarctic—Wilkes Land, Ross Sea, and the independent Scotia arc and sub Antarctic islands. Patterns of endemism were very different between the bivalves and gastropods. On the basis of distributional ranges and radiation centres of evolutionarily successful families and genera we define three biogeographic provinces in the Southern Ocean: (1) the continental high Antarctic province excluding the Antarctic Peninsula, (2) the Scotia Sea province including the Antarctic Peninsula, and (3) the sub Antarctic province comprising the islands in the vicinity of the Antarctic Circumpolar Current.

  2. Cenozoic evolution of the Antarctic Peninsula continental margin

    SciTech Connect

    Anderson, J.B. )

    1990-05-01

    Cenozoic evolution of the Antarctic Peninsula continental margin has involved a series of ridge (Aluk Ridge)-trench collisions between the Pacific and Antarctic plates. Subduction occurred episodically between segments of the Pacific plate that are bounded by major fracture zones. The age of ridge-trench collisions decreases from south to north along the margin. The very northern part of the margin, between the Hero and Shackleton fracture zones, has the last surviving Aluk-Antarctic spreading ridge segments and the only remaining trench topography. The sedimentary cover on the northern margin is relatively thin generally less than 1.5 km, thus providing a unique setting in which to examine margin evolution using high resolution seismic methods. Over 5,000 km of high resolution (water gun) seismic profiles were acquired from the Antarctic Peninsula margin during four cruises to the region. The margin is divided into discrete fracture-zone-bounded segments; each segment displays different styles of development. Highly tectonized active margin sequences have been buried beneath a seaward-thickening sediment wedge that represents the passive stage of margin development Ice caps, which have existed in the Antarctic Peninsula region since at least the late Oligocene, have advanced onto the continental shelf on numerous occasions, eroding hundreds of meters into the shelf and depositing a thick sequence of deposits characterized by till tongues and glacial troughs. Glacial erosion has been the main factor responsible for overdeepening of the shelf; isostasy is of secondary importance. As the shelf was lowered by glacial erosion, it was able to accommodate thicker and more unstable marine ice sheets. The shelf also became a vast reservoir for cold, saline shelf water, one of the key ingredients of Antarctic bottom water.

  3. Pseudoalteromonas spp. serve as initial bacterial attractants in mesocosms of coastal waters but have subsequent antifouling capacity in mesocosms and when embedded in paint.

    PubMed

    Bernbom, Nete; Ng, Yoke Yin; Olsen, Stefan Møller; Gram, Lone

    2013-11-01

    The purpose of the present study was to determine if the monoculture antifouling effect of several pigmented pseudoalteromonads was retained in in vitro mesocosm systems using natural coastal seawater and when the bacteria were embedded in paint used on surfaces submerged in coastal waters. Pseudoalteromonas piscicida survived on a steel surface and retained antifouling activity for at least 53 days in sterile seawater, whereas P. tunicata survived and had antifouling activity for only 1 week. However, during the first week, all Pseudoalteromonas strains facilitated rather than prevented bacterial attachment when used to coat stainless steel surfaces and submerged in mesocosms with natural seawater. The bacterial density on surfaces coated with sterile growth medium was 10(5) cells/cm(2) after 7 days, whereas counts on surfaces precoated with Pseudoalteromonas were significantly higher, at 10(6) to 10(8) cells/cm(2). However, after 53 days, seven of eight Pseudoalteromonas strains had reduced total bacterial adhesion compared to the control. P. piscicida, P. antarctica, and P. ulvae remained on the surface, at levels similar to those in the initial coating, whereas P. tunicata could not be detected. Larger fouling organisms were observed on all plates precoated with Pseudoalteromonas; however, plates coated only with sterile growth medium were dominated by a bacterial biofilm. Suspensions of a P. piscicida strain and a P. tunicata strain were incorporated into ship paints (Hempasil x3 87500 and Hempasil 77500) used on plates that were placed at the Hempel A/S test site in Jyllinge Harbor. For the first 4 months, no differences were observed between control plates and treated plates, but after 5 to 6 months, the control plates were more fouled than the plates with pseudoalteromonad-based paint. Our study demonstrates that no single laboratory assay can predict antifouling effects and that a combination of laboratory and real-life methods must be used to determine

  4. State of the Antarctic and Southern Ocean climate system

    NASA Astrophysics Data System (ADS)

    Mayewski, P. A.; Meredith, M. P.; Summerhayes, C. P.; Turner, J.; Worby, A.; Barrett, P. J.; Casassa, G.; Bertler, N. A. N.; Bracegirdle, T.; Naveira Garabato, A. C.; Bromwich, D.; Campbell, H.; Hamilton, G. S.; Lyons, W. B.; Maasch, K. A.; Aoki, S.; Xiao, C.; van Ommen, Tas

    2009-03-01

    This paper reviews developments in our understanding of the state of the Antarctic and Southern Ocean climate and its relation to the global climate system over the last few millennia. Climate over this and earlier periods has not been stable, as evidenced by the occurrence of abrupt changes in atmospheric circulation and temperature recorded in Antarctic ice core proxies for past climate. Two of the most prominent abrupt climate change events are characterized by intensification of the circumpolar westerlies (also known as the Southern Annular Mode) between ˜6000 and 5000 years ago and since 1200-1000 years ago. Following the last of these is a period of major trans-Antarctic reorganization of atmospheric circulation and temperature between A.D. 1700 and 1850. The two earlier Antarctic abrupt climate change events appear linked to but predate by several centuries even more abrupt climate change in the North Atlantic, and the end of the more recent event is coincident with reorganization of atmospheric circulation in the North Pacific. Improved understanding of such events and of the associations between abrupt climate change events recorded in both hemispheres is critical to predicting the impact and timing of future abrupt climate change events potentially forced by anthropogenic changes in greenhouse gases and aerosols. Special attention is given to the climate of the past 200 years, which was recorded by a network of recently available shallow firn cores, and to that of the past 50 years, which was monitored by the continuous instrumental record. Significant regional climate changes have taken place in the Antarctic during the past 50 years. Atmospheric temperatures have increased markedly over the Antarctic Peninsula, linked to nearby ocean warming and intensification of the circumpolar westerlies. Glaciers are retreating on the peninsula, in Patagonia, on the sub-Antarctic islands, and in West Antarctica adjacent to the peninsula. The penetration of marine

  5. Stardust in Antarctic Micrometeorites

    SciTech Connect

    Yada, Toru; Floss, Christine; Stadermann, Frank J.; Zinner, E.; Nakamura, T.; Noguchi, T.; Lea, Alan S.

    2008-03-07

    We report the discovery of presolar silicate, oxide (hibonite) and (possibly) SiC grains from four Antarctic micrometeorites. The oxygen isotopic compositions of the eighteen presolar silicate (and one oxide) grains found are consistent with those observed previously in primitive meteorites and interplanetary dust particles, and indicate origins in oxygen-rich red giant or asymptotic giant branch stars. Four grains with anomalous C isotopic compositions were also detected. 12C/13C as well as Si ratios are similar to those of mainstream SiC grains; the N isotopic composition of one grain is also consistent with a mainstream SiC classification. Presolar silicate grains were found in three of the seven AMMs studied, and are heterogeneously distributed within these micrometeorites. Fourteen of the 18 presolar silicate grains and 3 of the 4 C-anomalous grains were found within one AMM, T98G8. The presence of magnesiowüstite, which forms mainly through the decomposition of carbonates, in AMMs without presolar silicates, and its absence in the presolar silicate-bearing micrometeorites, suggests that parent body processes (specifically aqueous alteration) may determine the presence or absence of presolar silicates in Antarctic micrometeorites.

  6. Gazetteer of the Antarctic

    USGS Publications Warehouse

    ,; ,; ,; ,

    1989-01-01

    This gazetteer lists antarctic names approved by the United States Board on Geographic Names and by the Secretary of the Interior. The Board is the interagency body created by law to standardize and promulgate geographic names for official purposes. As the official standard for names in Antarctica, the gazetteer assures accuracy and uniformity for the specialist and the general user alike. Unlike the last (1981) edition, now out of print, the book contains neither historical notes nor textual descriptions of features. The gazetteer contains names of features in Antarctica and the area extending northward to the Antarctic Convergence that have been approved by the Board as recently as mid-1989. It supersedes previous Board gazetteers for the area. For each geographic feature, the book contains the name, cross references if any, and latitude and longitude. Coverage corresponds to that of maps at the scale of 1:250,000 or larger for islands, coastal Antarctica, and mountains and ranges of the continent. Much of the interior of Antarctica, an ice plateau, has been mapped at a smaller scale and is nearly devoid of features and toponyms. All of the names are for natural features; scientific stations are not listed. For the names of submarine features, reference should be made to the Gazetteer of Undersea Features, U.S. Board on Geographic Names (1981).

  7. Antarctic Peninsula Ice Sheet evolution during the Cenozoic Era

    NASA Astrophysics Data System (ADS)

    Davies, Bethan J.; Hambrey, Michael J.; Smellie, John L.; Carrivick, Jonathan L.; Glasser, Neil F.

    2012-01-01

    The Antarctic Peninsula region is currently undergoing rapid environmental change, resulting in the thinning, acceleration and recession of glaciers and the sequential collapse of ice shelves. It is important to view these changes in the context of long-term palaeoenvironmental complexity and to understand the key processes controlling ice sheet growth and recession. In addition, numerical ice sheet models require detailed geological data for tuning and testing. Therefore, this paper systematically and holistically reviews published geological evidence for Antarctic Peninsula Ice Sheet variability for each key locality throughout the Cenozoic, and brings together the prevailing consensus of the extent, character and behaviour of the glaciations of the Antarctic Peninsula region. Major contributions include a downloadable database of 186 terrestrial and marine calibrated dates; an original reconstruction of the LGM ice sheet; and a new series of isochrones detailing ice sheet retreat following the LGM. Glaciation of Antarctica was initiated around the Eocene/Oligocene transition in East Antarctica. Palaeogene records of Antarctic Peninsula glaciation are primarily restricted to King George Island, where glacigenic sediments provide a record of early East Antarctic glaciations, but with modification of far-travelled erratics by local South Shetland Island ice caps. Evidence for Neogene glaciation is derived primarily from King George Island and James Ross Island, where glaciovolcanic strata indicate that ice thicknesses reached 500-850 m during glacials. This suggests that the Antarctic Peninsula Ice Sheet draped, rather than drowned, the topography. Marine geophysical investigations indicate multiple ice sheet advances during this time. Seismic profiling of continental shelf-slope deposits indicates up to ten large advances of the Antarctic Peninsula Ice Sheet during the Early Pleistocene, when the ice sheet was dominated by 40 kyr cycles. Glacials became more

  8. Transcriptome of the Antarctic amphipod Gondogeneia antarctica and its response to pollutant exposure.

    PubMed

    Kang, Seunghyun; Kim, Sanghee; Park, Hyun

    2015-12-01

    Gondogeneia antarctica is widely distributed off the western Antarctic Peninsula and is a key species in the Antarctic food web. In this study, we performed Illumina sequencing to produce a total of 4,599,079,601 (4.6Gb) nucleotides and a comprehensive transcript dataset for G. antarctica. Over 46 million total reads were assembled into 20,749 contigs, and 12,461 annotated genes were predicted by Blastx. The RNA-seq results after exposure to three pollutants showed that 658, 169 and 367 genes that were potential biomarkers of responses to pollutants for this species were specifically upregulated after exposure to PCBs (Polychlorinated biphenyls), PFOS (Perfluorooctanesulfonic acid) and PFOA (Perfluorooctanoic acid), respectively. These data represent the first transcriptome resource for the Antarctic amphipod G. antarctica and provide a useful resource for studying Antarctic marine species.

  9. Metazoan Parasites of Antarctic Fishes.

    PubMed

    Oğuz, Mehmet Cemal; Tepe, Yahya; Belk, Mark C; Heckmann, Richard A; Aslan, Burçak; Gürgen, Meryem; Bray, Rodney A; Akgül, Ülker

    2015-06-01

    To date, there have been nearly 100 papers published on metazoan parasites of Antarctic fishes, but there has not yet been any compilation of a species list of fish parasites for this large geographic area. Herein, we provide a list of all documented occurrences of monogenean, cestode, digenean, acanthocephalan, nematode, and hirudinean parasites of Antarctic fishes. The list includes nearly 250 parasite species found in 142 species of host fishes. It is likely that there are more species of fish parasites, which are yet to be documented from Antarctic waters.

  10. Psychological factors in the antarctic.

    PubMed

    Rothblum, E D

    1990-05-01

    For the people who live and work in the Antarctic, isolation and extreme physical conditions cause considerable stress. This article reviews psychological research on Antarctic residents, focusing on factors related to the isolation (effective personnel selection, positive adjustment, conflict, and reintegration into the home environment) and factors related to the physical environment (the extreme cold, high altitude, increased radiation, sensory deprivation, and seasonal changes in activity level). Finally, Antarctic research has been applied to the study of future space travel and space station habitation.

  11. Antarctic total ozone in 1958

    SciTech Connect

    Newman, P.A. )

    1994-04-22

    The Antarctic ozone hole results from catalytic destruction of ozone by chlorine radicals. The hole develops in August, reaches its full depth in early October, and is gone by early December of each year. Extremely low total ozone measurements were made at the Antarctic Dumont d'Urville station in 1958. These measurements were derived from spectrographic plates of the blue sky, the moon, and two stars. These Dumont plate data are inconsistent with 1958 Dobson spectrophotometer ozone measurements, inconsistent with present-day Antarctic observations, and inconsistent with meteorological and theoretical information. There is no credible evidence for an ozone hole in 1958.

  12. Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters

    PubMed Central

    Harris, Austin P.; Stelling, Savannah C.; Utturkar, Sagar M.; Alshibli, Noor K.; Brown, Steven D.

    2014-01-01

    Here, we report the draft genome of Pseudoalteromonas sp. strain ND6B, which is able to grow with crude oil as a carbon source. Strain ND6B was isolated from eastern Mediterranean Sea deep water at a depth of 1,210 m. The genome of strain ND6B provides insight into the oil-degrading ability of the Pseudoalteromonas species. PMID:25428968

  13. Antarctic Meteorite Location Map Series

    NASA Technical Reports Server (NTRS)

    Schutt, John (Editor); Fessler, Brian (Editor); Cassidy, William (Editor)

    1989-01-01

    Antarctica has been a prolific source of meteorites since meteorite concentrations were discovered in 1969. The Antarctic Search For Meteorites (ANSMET) project has been active over much of the Trans-Antarctic Mountain Range. The first ANSMET expedition (a joint U.S.-Japanese effort) discovered what turned out to be a significant concentration of meteorites at the Allan Hills in Victoria Land. Later reconnaissance in this region resulted in the discovery of meteorite concentrations on icefields to the west of the Allan Hills, at Reckling Moraine, and Elephant Moraine. Antarctic meteorite location maps (reduced versions) of the Allan Hills main, near western, middle western, and far western icefields and the Elephant Moraine icefield are presented. Other Antarctic meteorite location maps for the specimens found by the ANSMET project are being prepared.

  14. Antarctic glacial geologic record and GCM modeling: A test

    SciTech Connect

    Elliot, D.H.; Bromwich, D.H.; Harwood, D.M.; Webb, P.

    1992-03-01

    A recent GCM (General Circulation Model) study of Antarctic glaciation by Oglesby concluded that (1) oceanic heat transport is relatively unimportant in the development and maintenance of Antarctic glaciation; (2) height and polar position, not the Antarctic Circumpolar Current, have led to thermal isolation; and (3) surface elevation may be crucial for glaciation. Model results are here evaluated against the Pliocene geologic record for Antarctica. The Sirius Group, widely distributed in the Transantarctic Mountains, contains diatom floras suggesting open marine conditions in interior East Antarctica as recently as about 3 m.y. ago. The Sirius deposits also contain a sparse fossil flora including Nothofagus wood, demonstrating snow-free conditions and elevated summer temperatures within 500 km of the South Pole. Based on fission track data and marine sediments, uplift rates for the Transantarctic Mountains are estimated to average 50-100 m m.y.-1 for the last 10 m.y., although rates may have been higher during the last 3 m.y. The continental interior is also most unlikely to have changed elevation by more than a few hundred meters in the last 3 m.y. If the dating of the Sirius is correct and uplift rates have not been an order of magnitude higher, then polar location and elevation cannot be primary controls on the formation and subsequent fluctuations of the ice sheet.

  15. Seeking the True Antarctic Ocean

    NASA Astrophysics Data System (ADS)

    Miller, R. G.

    2007-12-01

    With World Ocean warming a corrected name use is recommend with a universal adoption of the name, "Antarctic Ocean. This one large body of circumpolar water lies adjacent to - and south of - the Antarctic Convergence, on its northern perimeter, and is bordered to the south by the shoreline of the Antarctic continent. The Antarctic Ocean has a distinct water mass, with a true perimeter, and with a homogeneity, comprizing a unique environment for a specialized flora and fauna. It is recognized generally by its surface waters, ranging from 3.5 - 4.5 degrees Celsius (summer) and one degree C (winter).While its northern boundary, ' The Antarctic Convergence', has a water quality and thermal difference, this polar front is continuous and circumpolar, and it abuts -- and streams along with -- the ultimate southern extremities of the Atlantic, Pacific and Indian Ocean waters. Parameters, characteristics and dynamics of water exchange are considered, here, with some water exchanges, with Intermediate and Antarctic Bottom water noted. It maintains its own forceful 'West Wind Drift', a current driven and emboldened by Earth's Geostrophic West Wind. Features defining the Antarctic Ocean: (1)Washing all shores of the continent named Antarctica; it is .the only ocean reaching this Antarctic Continent.; (2) it is one of Earth's two Polar (and coldest) oceans, the other, named Arctic Ocean, of which it is the opposite (the Anti); (3) its distinctive cold waters of the Antarctic Ocean and its peripheral seas, floating ice tongues, the frigid stamp of Antarctica's continental glaciers and ice fields; (4) the Antarctic Continent is the source of continual replenishment from her ice cap and melt-water derived from the great mountains, valleys and the massive polar dome of ice. Further, in the literature the present usage, 'Southern Ocean', by some authors, confuses the true Antarctic environmental waters (i.e. south of - and within the South Polar Front - Convergence) with southern

  16. Effects of prodigiosin family compounds from Pseudoalteromonas sp. 1020R on the activities of protein phosphatases and protein kinases.

    PubMed

    Soliev, Azamjon B; Hosokawa, Kakushi; Enomoto, Keiichi

    2015-01-01

    Pseudoalteromonas sp. strain 1020R produces prodigiosin and its closely related congeners, which differ in the length of their alkyl side chains. These red-pigmented compounds were found to exhibit cytotoxicity against human leukemia cell lines. The compounds also showed dose-dependent inhibitory effects on protein phosphatase 2A and protein tyrosine phosphatase 1B (PTP1B), while remaining relatively inactive against protein kinases, including protein tyrosine kinase, Ca(2+)/calmodulin-dependent protein kinase and protein kinases A and C. Comparative studies of the individual pigmented compounds on PTP1B inhibition showed that as the chain length of the alkyl group at the C-3 position of the compound increased, the inhibitory effect on PTP1B decreased. These results suggest that protein phosphatases but not protein kinases might be involved in the cytotoxicity of the prodigiosin family of compounds against malignant cells.

  17. Antarctic Crabs: Invasion or Endurance?

    PubMed Central

    Griffiths, Huw J.; Whittle, Rowan J.; Roberts, Stephen J.; Belchier, Mark; Linse, Katrin

    2013-01-01

    Recent scientific interest following the “discovery” of lithodid crabs around Antarctica has centred on a hypothesis that these crabs might be poised to invade the Antarctic shelf if the recent warming trend continues, potentially decimating its native fauna. This “invasion hypothesis” suggests that decapod crabs were driven out of Antarctica 40–15 million years ago and are only now returning as “warm” enough habitats become available. The hypothesis is based on a geographically and spatially poor fossil record of a different group of crabs (Brachyura), and examination of relatively few Recent lithodid samples from the Antarctic slope. In this paper, we examine the existing lithodid fossil record and present the distribution and biogeographic patterns derived from over 16,000 records of Recent Southern Hemisphere crabs and lobsters. Globally, the lithodid fossil record consists of only two known specimens, neither of which comes from the Antarctic. Recent records show that 22 species of crabs and lobsters have been reported from the Southern Ocean, with 12 species found south of 60°S. All are restricted to waters warmer than 0°C, with their Antarctic distribution limited to the areas of seafloor dominated by Circumpolar Deep Water (CDW). Currently, CDW extends further and shallower onto the West Antarctic shelf than the known distribution ranges of most lithodid species examined. Geological evidence suggests that West Antarctic shelf could have been available for colonisation during the last 9,000 years. Distribution patterns, species richness, and levels of endemism all suggest that, rather than becoming extinct and recently re-invading from outside Antarctica, the lithodid crabs have likely persisted, and even radiated, on or near to Antarctic slope. We conclude there is no evidence for a modern-day “crab invasion”. We recommend a repeated targeted lithodid sampling program along the West Antarctic shelf to fully test the validity of the

  18. Antarctic crabs: invasion or endurance?

    PubMed

    Griffiths, Huw J; Whittle, Rowan J; Roberts, Stephen J; Belchier, Mark; Linse, Katrin

    2013-01-01

    Recent scientific interest following the "discovery" of lithodid crabs around Antarctica has centred on a hypothesis that these crabs might be poised to invade the Antarctic shelf if the recent warming trend continues, potentially decimating its native fauna. This "invasion hypothesis" suggests that decapod crabs were driven out of Antarctica 40-15 million years ago and are only now returning as "warm" enough habitats become available. The hypothesis is based on a geographically and spatially poor fossil record of a different group of crabs (Brachyura), and examination of relatively few Recent lithodid samples from the Antarctic slope. In this paper, we examine the existing lithodid fossil record and present the distribution and biogeographic patterns derived from over 16,000 records of Recent Southern Hemisphere crabs and lobsters. Globally, the lithodid fossil record consists of only two known specimens, neither of which comes from the Antarctic. Recent records show that 22 species of crabs and lobsters have been reported from the Southern Ocean, with 12 species found south of 60 °S. All are restricted to waters warmer than 0 °C, with their Antarctic distribution limited to the areas of seafloor dominated by Circumpolar Deep Water (CDW). Currently, CDW extends further and shallower onto the West Antarctic shelf than the known distribution ranges of most lithodid species examined. Geological evidence suggests that West Antarctic shelf could have been available for colonisation during the last 9,000 years. Distribution patterns, species richness, and levels of endemism all suggest that, rather than becoming extinct and recently re-invading from outside Antarctica, the lithodid crabs have likely persisted, and even radiated, on or near to Antarctic slope. We conclude there is no evidence for a modern-day "crab invasion". We recommend a repeated targeted lithodid sampling program along the West Antarctic shelf to fully test the validity of the "invasion hypothesis

  19. Antarctic crabs: invasion or endurance?

    PubMed

    Griffiths, Huw J; Whittle, Rowan J; Roberts, Stephen J; Belchier, Mark; Linse, Katrin

    2013-01-01

    Recent scientific interest following the "discovery" of lithodid crabs around Antarctica has centred on a hypothesis that these crabs might be poised to invade the Antarctic shelf if the recent warming trend continues, potentially decimating its native fauna. This "invasion hypothesis" suggests that decapod crabs were driven out of Antarctica 40-15 million years ago and are only now returning as "warm" enough habitats become available. The hypothesis is based on a geographically and spatially poor fossil record of a different group of crabs (Brachyura), and examination of relatively few Recent lithodid samples from the Antarctic slope. In this paper, we examine the existing lithodid fossil record and present the distribution and biogeographic patterns derived from over 16,000 records of Recent Southern Hemisphere crabs and lobsters. Globally, the lithodid fossil record consists of only two known specimens, neither of which comes from the Antarctic. Recent records show that 22 species of crabs and lobsters have been reported from the Southern Ocean, with 12 species found south of 60 °S. All are restricted to waters warmer than 0 °C, with their Antarctic distribution limited to the areas of seafloor dominated by Circumpolar Deep Water (CDW). Currently, CDW extends further and shallower onto the West Antarctic shelf than the known distribution ranges of most lithodid species examined. Geological evidence suggests that West Antarctic shelf could have been available for colonisation during the last 9,000 years. Distribution patterns, species richness, and levels of endemism all suggest that, rather than becoming extinct and recently re-invading from outside Antarctica, the lithodid crabs have likely persisted, and even radiated, on or near to Antarctic slope. We conclude there is no evidence for a modern-day "crab invasion". We recommend a repeated targeted lithodid sampling program along the West Antarctic shelf to fully test the validity of the "invasion hypothesis".

  20. Characterization of Bacterial, Archaeal and Eukaryote Symbionts from Antarctic Sponges Reveals a High Diversity at a Three-Domain Level and a Particular Signature for This Ecosystem

    PubMed Central

    Rodríguez-Marconi, Susana; De la Iglesia, Rodrigo; Díez, Beatriz; Fonseca, Cássio A.; Hajdu, Eduardo; Trefault, Nicole

    2015-01-01

    Sponge-associated microbial communities include members from the three domains of life. In the case of bacteria, they are diverse, host specific and different from the surrounding seawater. However, little is known about the diversity and specificity of Eukarya and Archaea living in association with marine sponges. This knowledge gap is even greater regarding sponges from regions other than temperate and tropical environments. In Antarctica, marine sponges are abundant and important members of the benthos, structuring the Antarctic marine ecosystem. In this study, we used high throughput ribosomal gene sequencing to investigate the three-domain diversity and community composition from eight different Antarctic sponges. Taxonomic identification reveals that they belong to families Acarnidae, Chalinidae, Hymedesmiidae, Hymeniacidonidae, Leucettidae, Microcionidae, and Myxillidae. Our study indicates that there are different diversity and similarity patterns between bacterial/archaeal and eukaryote microbial symbionts from these Antarctic marine sponges, indicating inherent differences in how organisms from different domains establish symbiotic relationships. In general, when considering diversity indices and number of phyla detected, sponge-associated communities are more diverse than the planktonic communities. We conclude that three-domain microbial communities from Antarctic sponges are different from surrounding planktonic communities, expanding previous observations for Bacteria and including the Antarctic environment. Furthermore, we reveal differences in the composition of the sponge associated bacterial assemblages between Antarctic and tropical-temperate environments and the presence of a highly complex microbial eukaryote community, suggesting a particular signature for Antarctic sponges, different to that reported from other ecosystems. PMID:26421612

  1. Characterization of Bacterial, Archaeal and Eukaryote Symbionts from Antarctic Sponges Reveals a High Diversity at a Three-Domain Level and a Particular Signature for This Ecosystem.

    PubMed

    Rodríguez-Marconi, Susana; De la Iglesia, Rodrigo; Díez, Beatriz; Fonseca, Cássio A; Hajdu, Eduardo; Trefault, Nicole

    2015-01-01

    Sponge-associated microbial communities include members from the three domains of life. In the case of bacteria, they are diverse, host specific and different from the surrounding seawater. However, little is known about the diversity and specificity of Eukarya and Archaea living in association with marine sponges. This knowledge gap is even greater regarding sponges from regions other than temperate and tropical environments. In Antarctica, marine sponges are abundant and important members of the benthos, structuring the Antarctic marine ecosystem. In this study, we used high throughput ribosomal gene sequencing to investigate the three-domain diversity and community composition from eight different Antarctic sponges. Taxonomic identification reveals that they belong to families Acarnidae, Chalinidae, Hymedesmiidae, Hymeniacidonidae, Leucettidae, Microcionidae, and Myxillidae. Our study indicates that there are different diversity and similarity patterns between bacterial/archaeal and eukaryote microbial symbionts from these Antarctic marine sponges, indicating inherent differences in how organisms from different domains establish symbiotic relationships. In general, when considering diversity indices and number of phyla detected, sponge-associated communities are more diverse than the planktonic communities. We conclude that three-domain microbial communities from Antarctic sponges are different from surrounding planktonic communities, expanding previous observations for Bacteria and including the Antarctic environment. Furthermore, we reveal differences in the composition of the sponge associated bacterial assemblages between Antarctic and tropical-temperate environments and the presence of a highly complex microbial eukaryote community, suggesting a particular signature for Antarctic sponges, different to that reported from other ecosystems.

  2. Characterization of Bacterial, Archaeal and Eukaryote Symbionts from Antarctic Sponges Reveals a High Diversity at a Three-Domain Level and a Particular Signature for This Ecosystem.

    PubMed

    Rodríguez-Marconi, Susana; De la Iglesia, Rodrigo; Díez, Beatriz; Fonseca, Cássio A; Hajdu, Eduardo; Trefault, Nicole

    2015-01-01

    Sponge-associated microbial communities include members from the three domains of life. In the case of bacteria, they are diverse, host specific and different from the surrounding seawater. However, little is known about the diversity and specificity of Eukarya and Archaea living in association with marine sponges. This knowledge gap is even greater regarding sponges from regions other than temperate and tropical environments. In Antarctica, marine sponges are abundant and important members of the benthos, structuring the Antarctic marine ecosystem. In this study, we used high throughput ribosomal gene sequencing to investigate the three-domain diversity and community composition from eight different Antarctic sponges. Taxonomic identification reveals that they belong to families Acarnidae, Chalinidae, Hymedesmiidae, Hymeniacidonidae, Leucettidae, Microcionidae, and Myxillidae. Our study indicates that there are different diversity and similarity patterns between bacterial/archaeal and eukaryote microbial symbionts from these Antarctic marine sponges, indicating inherent differences in how organisms from different domains establish symbiotic relationships. In general, when considering diversity indices and number of phyla detected, sponge-associated communities are more diverse than the planktonic communities. We conclude that three-domain microbial communities from Antarctic sponges are different from surrounding planktonic communities, expanding previous observations for Bacteria and including the Antarctic environment. Furthermore, we reveal differences in the composition of the sponge associated bacterial assemblages between Antarctic and tropical-temperate environments and the presence of a highly complex microbial eukaryote community, suggesting a particular signature for Antarctic sponges, different to that reported from other ecosystems. PMID:26421612

  3. 77 FR 7610 - Notice of permit applications received under the Antarctic Conservation Act of 1978

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-13

    ...: 2012-015 1. Applicant: Laurie Connell, School of Marine Sciences, University of Maine, 5735 Hitchner... From the Federal Register Online via the Government Publishing Office NATIONAL SCIENCE FOUNDATION... Science Foundation. ACTION: Notice of Permit Applications Received Under the Antarctic Conservation Act...

  4. The Antarctic Master Directory -- a resource for Antarctic Scientists

    NASA Astrophysics Data System (ADS)

    Scharfen, G.; Bauer, R.

    2002-12-01

    Under the auspices of the Antarctic Treaty, a group of nations conducting Antarctic scientific research have created the Antarctic Master Directory (AMD), a resource for Antarctic scientists. The AMD is a Web-based, searchable directory containing data descriptions (metadata in the form of DIF entries) of Antarctic scientific data, and is a node of the International Directory Network/Global Change Master Directory (IDN/GCMD). The data descriptions in the AMD, essentially a data catalog of Antarctic scientific data, include information about what data were collected, where they were collected, when they were collected, who the scientists are, who the point of contact is, and information about the format of the data and what documentation and bibliographic information exists. As part of the AMD effort, the National Science Foundation Office of Polar Programs (OPP) funds the National Snow and Ice Data Center to operate the U.S. Antarctic Data Coordination Center (USADCC), the US focal point for the AMD. The USADCC assists PIs as they meet the requirements of the OPP "Guidelines and Award Conditions for Scientific Data", which identify the conditions for awards and responsibilities of PIs regarding the archival of data, and submission of metadata, resulting from their NSF OPP grants. The USADCC offers access to free, easy-to-use online tools that PIs can use to create the data descriptions that the NSF policy data requires. We provide advice to PIs on how to meet the data policy requirements, and can answer specific questions on related issues. Scientists can access data set descriptions submitted to the AMD, by thousands of scientists around the world, from the USADCC web pages.

  5. Antarctic Benthic Fauna in the Global Climate Change

    NASA Astrophysics Data System (ADS)

    Kidawa, Anna; Janecki, Tomasz

    2011-01-01

    In the last 50 years a significant climatic shift has been observed along the Antarctic Peninsula (air and seawater temperature rise, glacial retreat, localized instances of lowered shallow waters salinities). Many Antarctic marine benthic invertebrates are adapted to specific environmental conditions (e.g. low stable temperatures, high salinity and oxygen content). Changes caused by global climate changes and subsequent glacial melting can be expected to have significant impacts on species physiology and distribution. The rise of sea water temperature coupled with such additional stress factors as melt water run-off, increased ice disturbance, disruption of food webs or invasion of alien species can be a serious problem for their long-term survival.

  6. Ozone depletion - Ultraviolet radiation and phytoplankton biology in Antarctic waters

    NASA Technical Reports Server (NTRS)

    Smith, R. C.; Prezelin, B. B.; Baker, K. S.; Bidigare, R. R.; Boucher, N. P.; Coley, T.; Karentz, D.; Macintyre, S.; Matlick, H. A.; Menzies, D.

    1992-01-01

    The near-50-percent thinning of the stratospheric ozone layer over the Antarctic, with increased passage of mid-UV radiation to the surface of the Southern Ocean, has prompted concern over possible radiation damage to the near-surface phytoplankton communities that are the bases of Antarctic marine ecosystems. As the ozone layer thinned, a 6-week study of the marginal ice zone of the Bellingshousen Sea in the austral spring of 1990 noted sea-surface and depth-dependent ratios of mid-UV irradiance to total irradiance increased, and mid-UV inhibition of photosynthesis increased. A 6-12 percent reduction in primary production associated with ozone depletion was estimated to have occurred over the course of the present study.

  7. Obliquity-paced Pliocene West Antarctic ice sheet oscillations

    USGS Publications Warehouse

    Naish, T.; Powell, R.; Levy, R.; Wilson, G.; Scherer, R.; Talarico, F.; Krissek, L.; Niessen, F.; Pompilio, M.; Wilson, T.; Carter, L.; DeConto, R.; Huybers, P.; McKay, R.; Pollard, D.; Ross, J.; Winter, D.; Barrett, P.; Browne, G.; Cody, R.; Cowan, E.; Crampton, J.; Dunbar, G.; Dunbar, N.; Florindo, F.; Gebhardt, C.; Graham, I.; Hannah, M.; Hansaraj, D.; Harwood, D.; Helling, D.; Henrys, S.; Hinnov, L.; Kuhn, G.; Kyle, P.; Laufer, A.; Maffioli, P.; Magens, D.; Mandernack, K.; McIntosh, W.; Millan, C.; Morin, R.; Ohneiser, C.; Paulsen, T.; Persico, D.; Raine, I.; Reed, J.; Riesselman, C.; Sagnotti, L.; Schmitt, D.; Sjunneskog, C.; Strong, P.; Taviani, M.; Vogel, S.; Wilch, T.; Williams, T.

    2009-01-01

    Thirty years after oxygen isotope records from microfossils deposited in ocean sediments confirmed the hypothesis that variations in the Earth's orbital geometry control the ice ages, fundamental questions remain over the response of the Antarctic ice sheets to orbital cycles. Furthermore, an understanding of the behaviour of the marine-based West Antarctic ice sheet (WAIS) during the 'warmer-than-present' early-Pliocene epoch (???5-3 Myr ago) is needed to better constrain the possible range of ice-sheet behaviour in the context of future global warming. Here we present a marine glacial record from the upper 600 m of the AND-1B sediment core recovered from beneath the northwest part of the Ross ice shelf by the ANDRILL programme and demonstrate well-dated, ???40-kyr cyclic variations in ice-sheet extent linked to cycles in insolation influenced by changes in the Earth's axial tilt (obliquity) during the Pliocene. Our data provide direct evidence for orbitally induced oscillations in the WAIS, which periodically collapsed, resulting in a switch from grounded ice, or ice shelves, to open waters in the Ross embayment when planetary temperatures were up to ???3??C warmer than today and atmospheric CO 2 concentration was as high as ???400 p.p.m.v. (refs 5, 6). The evidence is consistent with a new ice-sheet/ice-shelf model that simulates fluctuations in Antarctic ice volume of up to +7 m in equivalent sea level associated with the loss of the WAIS and up to +3 m in equivalent sea level from the East Antarctic ice sheet, in response to ocean-induced melting paced by obliquity. During interglacial times, diatomaceous sediments indicate high surface-water productivity, minimal summer sea ice and air temperatures above freezing, suggesting an additional influence of surface melt under conditions of elevated CO2. ??2009 Macmillan Publishers Limited. All rights reserved.

  8. Draft Genome Sequences of Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099 Isolated from the Hydrothermal Vents of the Juan de Fuca Ridge

    PubMed Central

    Liu, Rui; Wang, Mengqiang; Wang, Hao; Gao, Qiang; Hou, Zhanhui; Zhou, Zhi; Gao, Dahai

    2016-01-01

    This report describes the draft genome sequences of two strains, Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099, which were isolated from hydrothermal vents of the Juan de Fuca Ridge. The reads generated by an Ion Torrent PGM were assembled into contigs with total sizes of 4.4 Mb and 4.1 Mb for DSM 16098 and DSM 16099, respectively. PMID:27563045

  9. Draft Genome Sequences of Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099 Isolated from the Hydrothermal Vents of the Juan de Fuca Ridge.

    PubMed

    Zhang, Huan; Liu, Rui; Wang, Mengqiang; Wang, Hao; Gao, Qiang; Hou, Zhanhui; Zhou, Zhi; Gao, Dahai; Wang, Lingling

    2016-01-01

    This report describes the draft genome sequences of two strains, Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099, which were isolated from hydrothermal vents of the Juan de Fuca Ridge. The reads generated by an Ion Torrent PGM were assembled into contigs with total sizes of 4.4 Mb and 4.1 Mb for DSM 16098 and DSM 16099, respectively. PMID:27563045

  10. Draft Genome Sequences of Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099 Isolated from the Hydrothermal Vents of the Juan de Fuca Ridge.

    PubMed

    Zhang, Huan; Liu, Rui; Wang, Mengqiang; Wang, Hao; Gao, Qiang; Hou, Zhanhui; Zhou, Zhi; Gao, Dahai; Wang, Lingling

    2016-08-25

    This report describes the draft genome sequences of two strains, Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099, which were isolated from hydrothermal vents of the Juan de Fuca Ridge. The reads generated by an Ion Torrent PGM were assembled into contigs with total sizes of 4.4 Mb and 4.1 Mb for DSM 16098 and DSM 16099, respectively.

  11. Distinct composition signatures of archaeal and bacterial phylotypes in the Wanda Glacier forefield, Antarctic Peninsula.

    PubMed

    Pessi, Igor S; Osorio-Forero, César; Gálvez, Eric J C; Simões, Felipe L; Simões, Jefferson C; Junca, Howard; Macedo, Alexandre J

    2015-01-01

    Several studies have shown that microbial communities in Antarctic environments are highly diverse. However, considering that the Antarctic Peninsula is among the regions with the fastest warming rates, and that regional climate change has been linked to an increase in the mean rate of glacier retreat, the microbial diversity in Antarctic soil is still poorly understood. In this study, we analysed more than 40 000 sequences of the V5-V6 hypervariable region of the 16S rRNA gene obtained by 454 pyrosequencing from four soil samples from the Wanda Glacier forefield, King George Island, Antarctic Peninsula. Phylotype diversity and richness were surprisingly high, and taxonomic assignment of sequences revealed that communities are dominated by Proteobacteria, Bacteroidetes and Euryarchaeota, with a high frequency of archaeal and bacterial phylotypes unclassified at the genus level and without cultured representative strains, representing a distinct microbial community signature. Several phylotypes were related to marine microorganisms, indicating the importance of the marine environment as a source of colonizers for this recently deglaciated environment. Finally, dominant phylotypes were related to different microorganisms possessing a large array of metabolic strategies, indicating that early successional communities in Antarctic glacier forefield can be also functionally diverse.

  12. Australian-Antarctic discordance

    NASA Astrophysics Data System (ADS)

    Sempeéreé, Jean-Christophe; Palmer, Jeb; Christie, David M.; Phipps Morgan, Jason; Shor, Alexander N.

    1991-05-01

    The Australian-Antarctic discordance is a region of anomalous geophysical and geochemical properties along the mid-ocean ridge system. It includes the isotopic boundary between Pacific Ocean and Indian Ocean basalts. Its lavas have compositions consistent with low mantle temperatures and a relatively low overall extent of melting. These characteristics have been attributed to downward flow in the underlying mantle. New bathymetric and side-scan sonar data show that (1) the spreading axis within the discordance is predominantly characterized by a broad rift valley and segmentation characteristics typical of slow-spreading centers, (2) the isotopic boundary appears to be associated with unusual, chaotic sea floor, and (3) the spreading axis east of the discordance is characterized by an axial ridge typical of fast-spreading centers. These extreme variations, at an essentially constant (intermediate) spreading rate are consistent with differences in melt supply and mantle properties along the spreading axis within and east of the discordance, as suggested in previous studies.

  13. Thermoregulation in Antarctic fulmarine petrels.

    PubMed

    Weathers, W W; Gerhart, K L; Hodum, P J

    2000-12-01

    We measured resting metabolic rates at air temperatures between ca. -5 and 30 degrees C in snow petrels (Pagodroma nivea), cape petrels (Daption capense), Antarctic petrels (Thalassoica antarctica), and Antarctic fulmars (Fulmarus glacialoides). We measured seven age classes for each species: adults, and nestlings that were 3, 8, 15, 28, 35, and 42 days old. Basal metabolic rate (BMR) and thermal conductance (C) of adults averaged, respectively, 140% and 100% of values predicted allometrically for nonpasserine birds. Minimum metabolic rates of unfasted nestlings aged 15-42 days averaged, respectively, 97% and 98% of predicted adult BMR in Antarctic petrels and snow petrels, versus 119% and 126% of predicted in Antarctic fulmars and cape petrels. Nestlings of the southerly breeding snow petrel and Antarctic petrel were relatively well insulated compared with nestlings of other high-latitude seabirds. Adult lower critical temperature (T1c) was inversely related to body mass and averaged 9 degrees C lower than predicted allometrically. As nestlings grew, their T1c decreased with increasing body mass from ca. 14 to 22 degrees C (depending upon species) at 3 days of age, to -4 to 8 degrees C when nestlings attained peak mass. Nestling T1c subsequently increased as body mass decreased during pre-fledging weight recession. Nestling T1c was close to mean air temperature from the end of brooding until fledging in the three surface nesting species. PMID:11192262

  14. Tolerance to cadmium of free-living and associated with marine animals and eelgrass marine gamma-proteobacteria.

    PubMed

    Ivanova, Elena P; Kurilenko, Valerie V; Kurilenko, Arcady V; Gorshkova, Nataliya M; Shubin, Felix N; Nicolau, Dan V; Chelomin, Viktor P

    2002-05-01

    The tolerance to Cd2+ and possible mechanisms of Cd2+ detoxification by 178 free-living bacteria isolated from sea water, associated with marine animals (a mussel Crenomytilus grayanus, a scallop Patinopecten yessoensis), and eelgrass Zostera marina collected in The Sea of Japan and The Sea of Okhotsk have been studied. The concentrations of 25 and 50 mg Cd2+/L were highly toxic and inhibited the growth from 54% to 78% of the total bacteria studied. The free-living bacteria isolated from seawater samples (up to 50%) were tolerant to high concentrations of cadmium. Marine gamma-proteobacteria tolerated Cd2+ by the activation of different detoxifying mechanisms. The strain Halomonas sp. KMM 734 isolated from seawater prevented the uptake of Cd2+ into bacterial cells. The chromosomal cadmium resistance system of Pseudoalteromonas citrea KMM 461 and Marinobacter sp. KMM 181 was found to be similar to class III metallothioneins (also known as phytochelatins).

  15. Spatially Extensive Standardized Surveys Reveal Widespread, Multi-Decadal Increase in East Antarctic Adélie Penguin Populations

    PubMed Central

    Southwell, Colin; Emmerson, Louise; McKinlay, John; Newbery, Kym; Takahashi, Akinori; Kato, Akiko; Barbraud, Christophe; DeLord, Karine; Weimerskirch, Henri

    2015-01-01

    Seabirds are considered to be useful and practical indicators of the state of marine ecosystems because they integrate across changes in the lower trophic levels and the physical environment. Signals from this key group of species can indicate broad scale impacts or response to environmental change. Recent studies of penguin populations, the most commonly abundant Antarctic seabirds in the west Antarctic Peninsula and western Ross Sea, have demonstrated that physical changes in Antarctic marine environments have profound effects on biota at high trophic levels. Large populations of the circumpolar-breeding Adélie penguin occur in East Antarctica, but direct, standardized population data across much of this vast coastline have been more limited than in other Antarctic regions. We combine extensive new population survey data, new population estimation methods, and re-interpreted historical survey data to assess decadal-scale change in East Antarctic Adélie penguin breeding populations. We show that, in contrast to the west Antarctic Peninsula and western Ross Sea where breeding populations have decreased or shown variable trends over the last 30 years, East Antarctic regional populations have almost doubled in abundance since the 1980’s and have been increasing since the earliest counts in the 1960’s. The population changes are associated with five-year lagged changes in the physical environment, suggesting that the changing environment impacts primarily on the pre-breeding age classes. East Antarctic marine ecosystems have been subject to a number of changes over the last 50 years which may have influenced Adélie penguin population growth, including decadal-scale climate variation, an inferred mid-20th century sea-ice contraction, and early-to-mid 20th century exploitation of fish and whale populations. PMID:26488299

  16. Spatially Extensive Standardized Surveys Reveal Widespread, Multi-Decadal Increase in East Antarctic Adélie Penguin Populations.

    PubMed

    Southwell, Colin; Emmerson, Louise; McKinlay, John; Newbery, Kym; Takahashi, Akinori; Kato, Akiko; Barbraud, Christophe; DeLord, Karine; Weimerskirch, Henri

    2015-01-01

    Seabirds are considered to be useful and practical indicators of the state of marine ecosystems because they integrate across changes in the lower trophic levels and the physical environment. Signals from this key group of species can indicate broad scale impacts or response to environmental change. Recent studies of penguin populations, the most commonly abundant Antarctic seabirds in the west Antarctic Peninsula and western Ross Sea, have demonstrated that physical changes in Antarctic marine environments have profound effects on biota at high trophic levels. Large populations of the circumpolar-breeding Adélie penguin occur in East Antarctica, but direct, standardized population data across much of this vast coastline have been more limited than in other Antarctic regions. We combine extensive new population survey data, new population estimation methods, and re-interpreted historical survey data to assess decadal-scale change in East Antarctic Adélie penguin breeding populations. We show that, in contrast to the west Antarctic Peninsula and western Ross Sea where breeding populations have decreased or shown variable trends over the last 30 years, East Antarctic regional populations have almost doubled in abundance since the 1980's and have been increasing since the earliest counts in the 1960's. The population changes are associated with five-year lagged changes in the physical environment, suggesting that the changing environment impacts primarily on the pre-breeding age classes. East Antarctic marine ecosystems have been subject to a number of changes over the last 50 years which may have influenced Adélie penguin population growth, including decadal-scale climate variation, an inferred mid-20th century sea-ice contraction, and early-to-mid 20th century exploitation of fish and whale populations.

  17. Spatially Extensive Standardized Surveys Reveal Widespread, Multi-Decadal Increase in East Antarctic Adélie Penguin Populations.

    PubMed

    Southwell, Colin; Emmerson, Louise; McKinlay, John; Newbery, Kym; Takahashi, Akinori; Kato, Akiko; Barbraud, Christophe; DeLord, Karine; Weimerskirch, Henri

    2015-01-01

    Seabirds are considered to be useful and practical indicators of the state of marine ecosystems because they integrate across changes in the lower trophic levels and the physical environment. Signals from this key group of species can indicate broad scale impacts or response to environmental change. Recent studies of penguin populations, the most commonly abundant Antarctic seabirds in the west Antarctic Peninsula and western Ross Sea, have demonstrated that physical changes in Antarctic marine environments have profound effects on biota at high trophic levels. Large populations of the circumpolar-breeding Adélie penguin occur in East Antarctica, but direct, standardized population data across much of this vast coastline have been more limited than in other Antarctic regions. We combine extensive new population survey data, new population estimation methods, and re-interpreted historical survey data to assess decadal-scale change in East Antarctic Adélie penguin breeding populations. We show that, in contrast to the west Antarctic Peninsula and western Ross Sea where breeding populations have decreased or shown variable trends over the last 30 years, East Antarctic regional populations have almost doubled in abundance since the 1980's and have been increasing since the earliest counts in the 1960's. The population changes are associated with five-year lagged changes in the physical environment, suggesting that the changing environment impacts primarily on the pre-breeding age classes. East Antarctic marine ecosystems have been subject to a number of changes over the last 50 years which may have influenced Adélie penguin population growth, including decadal-scale climate variation, an inferred mid-20th century sea-ice contraction, and early-to-mid 20th century exploitation of fish and whale populations. PMID:26488299

  18. Status and conservation of Antarctic seals and seabirds: a review

    SciTech Connect

    Croxall, J.P.

    1987-01-01

    Present threats to Antarctic seabirds and seals when ashore include disturbance and habitat destruction and serious predation by introduced rats and cats at sub-Antarctic islands. In the marine environment threats are posed by pesticides (widespread but at low levels), pollution (mainly a potential problem associated with oil exploration), incidental takes and competition with commercial fisheries, which is reviewed in detail. Even in areas where harvesting of fish may be exceeding sustainable yield, predator-prey interaction data are inadequate to assess the level, or significance, of the effect on predators. Present krill harvests are small but likely to increase, especially in favored areas; species of potential vulnerability are noted. Existing legislation offers excellent protection for wildlife, but formally protected areas by no means cover the major breeding concentrations of seabirds and especially seals in all sectors and zones. There is a need for a comprehensive review, which in some areas will require extensive survey work. Programs for the control and elimination of alien predators need proper planning and major support. Marine reserves may be of limited benefit to pelagic seals and seabirds, and further research in some key areas is needed. Realistic environmental impact assessments will require more detailed information on predator distribution and movements than is available now; appropriate surveys and research need starting. Sensitive management of marine fisheries is difficult with the present level of quantitative data on predator-prey interactions. Difficulties in monitoring aspects of predator biology as indices of the state of prey stocks are reviewed.

  19. Antarctic Pliocene Biotic and Environmental Change in a Global Context Changes

    NASA Astrophysics Data System (ADS)

    Quilty, P. G.; Whitehead, J.

    2005-12-01

    The Pliocene was globally an interval of dramatic climate change and often compared with the environment evolving through human-induced global change. Antarctic history needs to be integrated into global patterns. The Prydz Bay-Prince Charles Mountains region of East Antarctica is a major source of data on Late Paleozoic-Recent changes in Antarctic biota and environment. This paper reviews what is known of 13 marine transgressions in the Late Neogene of the region and attempts to compare the Antarctic pattern with global patterns, such as those identified through global sequence stratigraphic analysis. Although temporal resolution in Antarctic sections is not always as good as for sections elsewhere, enough data exist to indicate that many events can be construed as part of global changes. It is expected that further correlation will be effected. During much of the Pliocene, there was less continental ice, reduced sea-ice cover, probably higher sea-level, penetration of marine conditions deep into the hinterland, and independent evidence to indicate that this was due to warmth. The Antarctic Polar Frontal Zone probably was much farther south than currently. There have been major changes in the marine fauna, and distribution of surviving species since the mid-Pliocene. Antarctic fish faunas underwent major changes during this interval with evolution of a major new Subfamily and diversification in at least two subfamilies. No palynological evidence of terrestrial vegetation has been recovered from the Prydz Bay - Prince Charles Mountain region. Analysis of origin and extinction data for two global planktonic foraminiferal biostratigraphic zonations shows that the interval Late Miocene-Pliocene was an interval of enhanced extinction and evolution, consistent with an interval of more rapid and high amplitude fluctuating environments.

  20. Absorption of ultraviolet radiation by antarctic phytoplankton

    SciTech Connect

    Vernet, M.; Mitchell, B.G. )

    1990-01-09

    Antarctic phytoplankton contain UV-absorbing compounds that may block damaging radiation. Compounds that absorb from 320-340 nm were observed in spectral absorption of both particulates and in methanol extracts of the particulates. The decrease in the total concentration of these UV compounds with respect to chlorophyll a, as measured by the ratio of in vitro absorption at 335 nm to absorption at 665 nm is variable and decreases with depth. We observed up to 5-fold decrease in this ratio for samples within the physically mixes surface layer. The absorption of UV radiation in methanol extracts, which peaks from 320 to 340 nm, may be composed of several compounds. Shifts in peak absorption with depth (for example, from 331 nm at surface to 321 nm at 75 m), may be interpreted as a change in composition. Ratios of protective yellow xanthophylls (diadinoxanthin + diatoxanthin) to photosynthetic fucoxanthin-like pigments have highest values in surface waters. As these pigments also absorb in the near UV, their function might extend to protection as well as utilization of UV radiation for photosynthesis. We document strong absorption in the UV from 320-330 nm for Antarctic marine particulates. Below this region of the solar energy spectrum, absolute energy levels of incident radiation drop off dramatically. Only wavelengths shorter than about 320 nm will be significantly enhanced due to ozone depletion. If the absorption we observed serves a protective role for phytoplankton photosynthesis, it appears the peak band is in the region where solar energy increases rapidly, and not in the region where depletion would cause significant variations in absolute flux.

  1. Multidecadal warming of Antarctic waters.

    PubMed

    Schmidtko, Sunke; Heywood, Karen J; Thompson, Andrew F; Aoki, Shigeru

    2014-12-01

    Decadal trends in the properties of seawater adjacent to Antarctica are poorly known, and the mechanisms responsible for such changes are uncertain. Antarctic ice sheet mass loss is largely driven by ice shelf basal melt, which is influenced by ocean-ice interactions and has been correlated with Antarctic Continental Shelf Bottom Water (ASBW) temperature. We document the spatial distribution of long-term large-scale trends in temperature, salinity, and core depth over the Antarctic continental shelf and slope. Warming at the seabed in the Bellingshausen and Amundsen seas is linked to increased heat content and to a shoaling of the mid-depth temperature maximum over the continental slope, allowing warmer, saltier water greater access to the shelf in recent years. Regions of ASBW warming are those exhibiting increased ice shelf melt. PMID:25477461

  2. Genetic differentiation in the circum—Antarctic sea spider Nymphon australe (Pycnogonida; Nymphonidae)

    NASA Astrophysics Data System (ADS)

    Arango, Claudia P.; Soler-Membrives, Anna; Miller, Karen J.

    2011-03-01

    Nymphon australe Hodgson 1902 is the most abundant species of sea spiders in the Southern Ocean. The species is recognised as highly morphologically variable, circumpolar and eurybathic—which is surprising given that sea spiders lack a planktonic stage; the fertilised eggs and larvae remain attached to the ovigers of the father, and consequently have limited dispersal capacity. In this study, we investigate the genetic structure of N. australe populations around Antarctica, confronting the apparent limited dispersal ability with its recognised circumpolarity. Here we analyse mitochondrial DNA of specimens from Antarctic Peninsula, Weddell Sea and East Antarctica to determine if they represent populations of the widespread N. australe — or instead we can recognise cryptic species - and how genetically different they are. Both CO1 and 16S sequence data produced single haplotype networks for N. australe from all three Antarctic locations without indication of cryptic speciation. However, we found strong phylogeographic structure among the three Antarctic locations based on CO1 data. There was only a single shared haplotype between the Antarctic Peninsula and the East Antarctica locations, and all three regions were significantly subdivided from each other ( FST=0.28, p<0.01). Furthermore, within the Antarctic Peninsula and East Antarctic locations, we found evidence of genetic subdivision between populations of N. australe separated by 10-100 s of km ( FST=0.07-0.22, p<0.05), consistent with sea spiders life history traits indicating a limited dispersal capability. We conclude N. australe represents a single circum-Antarctic species that, despite its limited dispersal abilities, has successfully colonised large parts of the Antarctic marine ecosystem through geological history. However, clear genetic differences among and within locations indicate contemporary gene flow is limited, and that populations of N. australe around Antarctica are effectively isolated.

  3. Antarctic analogs for Enceladus

    NASA Astrophysics Data System (ADS)

    Murray, A. E.; Andersen, D. T.; McKay, C. P.

    2014-12-01

    Enceladus is a new world for Astrobiology. The Cassini discovery of the icy plume emanating from the South Polar region indicates an active world, where detection of water, organics, sodium, and nano-particle silica in the plume strongly suggests that the source is a subsurface salty ocean reservoir. Recent gravity data from Cassini confirms the presence of a regional sea extending north to 50°S. An ocean habitat under a thick ice cover is perhaps a recurring theme in the Outer Solar System, but what makes Enceladus unique is that the plume jetting out into space is carrying samples of this ocean. Therefore, through the study of Enceladus' plumes we can gain new insights not only of a possible habitable world in the Solar Systems, but also about the formation and evolution of other icy-satellites. Cassini has been able to fly through this plume - effectively sampling the ocean. It is time to plan for future missions that do more detailed analyses, possibly return samples back to Earth and search for evidence of life. To help prepare for such missions, the need for earth-based analog environments is essential for logistical, methodological (life detection) and theoretical development. We have undertaken studies of two terrestrial environments that are close analogs to Enceladus' ocean: Lake Vida and Lake Untersee - two ice-sealed Antarctic lakes that represent physical, chemical and possibly biological analogs for Enceladus. By studying the diverse biology and physical and chemical constraints to life in these two unique lakes we will begin to understand the potential habitability of Enceladus and other icy moons, including possible sources of nutrients and energy, which together with liquid water are the key ingredients for life. Analog research such as this will also enable us to develop and test new strategies to search for evidence of life on Enceladus.

  4. Antarctic Ozone Hole, 2000

    NASA Technical Reports Server (NTRS)

    2002-01-01

    Each spring the ozone layer over Antarctica nearly disappears, forming a 'hole' over the entire continent. The hole is created by the interaction of some man-made chemicals-freon, for example-with Antarctica's unique weather patterns and extremely cold temperatures. Ozone in the stratosphere absorbs ultraviolet radiation from the sun, thereby protecting living things. Since the ozone hole was discovered many of the chemicals that destroy ozone have been banned, but they will remain in the atmosphere for decades. In 2000, the ozone hole grew quicker than usual and exceptionally large. By the first week in September the hole was the largest ever-11.4 million square miles. The top image shows the average total column ozone values over Antarctica for September 2000. (Total column ozone is the amount of ozone from the ground to the top of the atmosphere. A relatively typical measurement of 300 Dobson Units is equivalent to a layer of ozone 0.12 inches thick on the Earth's surface. Levels below 220 Dobson Units are considered to be significant ozone depletion.) The record-breaking hole is likely the result of lower than average ozone levels during the Antarctic fall and winter, and exceptionally cold temperatures. In October, however (bottom image), the hole shrank dramatically, much more quickly than usual. By the end of October, the hole was only one-third of it's previous size. In a typical year, the ozone hole does not collapse until the end of November. NASA scientists were surprised by this early shrinking and speculate it is related to the region's weather. Global ozone levels are measured by the Total Ozone Mapping Spectrometer (TOMS). For more information about ozone, read the Earth Observatory's ozone fact sheet, view global ozone data and see these ozone images. Images by Greg Shirah, NASA GSFC Scientific Visualization Studio.

  5. Constraining the Antarctic contribution to interglacial sea-level rise

    NASA Astrophysics Data System (ADS)

    Naish, T.; Mckay, R. M.; Barrett, P. J.; Levy, R. H.; Golledge, N. R.; Deconto, R. M.; Horgan, H. J.; Dunbar, G. B.

    2015-12-01

    Observations, models and paleoclimate reconstructions suggest that Antarctica's marine-based ice sheets behave in an unstable manner with episodes of rapid retreat in response to warming climate. Understanding the processes involved in this "marine ice sheet instability" is key for improving estimates of Antarctic ice sheet contribution to future sea-level rise. Another motivating factor is that far-field sea-level reconstructions and ice sheet models imply global mean sea level (GMSL) was up to 20m and 10m higher, respectively, compared with present day, during the interglacials of the warm Pliocene (~4-3Ma) and Late Pleistocene (at ~400ka and 125ka). This was when atmospheric CO2 was between 280 and 400ppm and global average surface temperatures were 1- 3°C warmer, suggesting polar ice sheets are highly sensitive to relatively modest increases in climate forcing. Such magnitudes of GMSL rise not only require near complete melt of the Greenland Ice Sheet and the West Antarctic Ice Sheet, but a substantial retreat of marine-based sectors of East Antarctic Ice Sheet. Recent geological drilling initiatives on the continental margin of Antarctica from both ship- (e.g. IODP; International Ocean Discovery Program) and ice-based (e.g. ANDRILL/Antarctic Geological Drilling) platforms have provided evidence supporting retreat of marine-based ice. However, without direct access through the ice sheet to archives preserved within sub-glacial sedimentary basins, the volume and extent of ice sheet retreat during past interglacials cannot be directly constrained. Sediment cores have been successfully recovered from beneath ice shelves by the ANDRILL Program and ice streams by the WISSARD (Whillans Ice Stream Sub-glacial Access Research Drilling) Project. Together with the potential of the new RAID (Rapid Access Ice Drill) initiative, these demonstrate the technological feasibility of accessing the subglacial bed and deeper sedimentary archives. In this talk I will outline the

  6. Fossil proxies of near-shore sea surface temperatures and seasonality from the late Neogene Antarctic shelf.

    PubMed

    Clark, Nicola A; Williams, Mark; Hill, Daniel J; Quilty, Patrick G; Smellie, John L; Zalasiewicz, Jan; Leng, Melanie J; Ellis, Michael A

    2013-08-01

    We evaluate the available palaeontological and geochemical proxy data from bivalves, bryozoans, silicoflagellates, diatoms and cetaceans for sea surface temperature (SST) regimes around the nearshore Antarctic coast during the late Neogene. These fossils can be found in a number of shallow marine sedimentary settings from three regions of the Antarctic continent, the northern Antarctic Peninsula, the Prydz Bay region and the western Ross Sea. Many of the proxies suggest maximum spring-summer SSTs that are warmer than present by up to 5 °C, which would result in reduced seasonal sea ice. The evidence suggests that the summers on the Antarctic shelf during the late Neogene experienced most of the warming, while winter SSTs were little changed from present. Feedbacks from changes in summer sea ice cover may have driven much of the late Neogene ocean warming seen in stratigraphic records. Synthesized late Neogene and earliest Quaternary Antarctic shelf proxy data are compared to the multi-model SST estimates of the Pliocene Model Intercomparison Project (PlioMIP) Experiment 2. Despite the fragmentary geographical and temporal context for the SST data, comparisons between the SST warming in each of the three regions represented in the marine palaeontological record of the Antarctic shelf and the PlioMIP climate simulations show a good concordance.

  7. Temperature-oxygen interactions in Antarctic nudibranch egg masses.

    PubMed

    Woods, H Arthur; Moran, Amy L

    2008-03-01

    The Southern Ocean is one of the coldest, most stable marine environments on Earth and represents a unique environment for investigating metabolic consequences of low temperature. Here we test predictions of a new diffusion-reaction model of O(2) distributions in egg masses, using egg masses of the Antarctic nudibranch mollusk, Tritonia challengeriana. When warmed from -1.5 degrees to +1.5 degrees C, embryos of T. challengeriana showed large increases in O(2) consumption (Q(10) values of 9.6-30.0). Oxygen electrode measurements in intact masses showed, however, that O(2) levels were high throughout and virtually unaffected by temperature. The model suggested that both effects stemmed from very low metabolic densities in egg masses. Detailed morphological measurements of egg masses of T. challengeriana and a temperate congener, T. diomedea, revealed large differences in structure that may be related to O(2) availability. Egg masses of T. challengeriana were approximately twice as thick. However, the most dramatic effects were observed in embryos: embryos of T. challengeriana were >32 times larger (by volume) than embryos of T. diomedea. Antarctic embryos also were contained singly in large egg capsules ( approximately 500 mum diameter). Consequently, Antarctic embryos occurred at much lower densities, with very low metabolic densities. PMID:18281343

  8. Principles of the Antarctic Treaty

    NASA Astrophysics Data System (ADS)

    Candidi, M.

    The operation of any base or expedition to Antarctica is regulated by the mutual agreement among nations in the “Antarctic Treaty”. This treaty deals with the major aspects of life in Antarctica and its main principles and provisions are described in what follows.

  9. Feeding repellence in Antarctic bryozoans.

    PubMed

    Figuerola, Blanca; Núñez-Pons, Laura; Moles, Juan; Avila, Conxita

    2013-11-01

    The Antarctic sea star Odontaster validus and the amphipod Cheirimedon femoratus are important predators in benthic communities. Some bryozoans are part of the diet of the asteroid and represent both potential host biosubstrata and prey for this omnivorous lysianassid amphipod. In response to such ecological pressure, bryozoans are expected to develop strategies to deter potential predators, ranging from physical to chemical mechanisms. However, the chemical ecology of Antarctic bryozoans has been scarcely studied. In this study we evaluated the presence of defenses against predation in selected species of Antarctic bryozoans. The sympatric omnivorous consumers O. validus and C. femoratus were selected to perform feeding assays with 16 ether extracts (EE) and 16 butanol extracts (BE) obtained from 16 samples that belonged to 13 different bryozoan species. Most species (9) were active (12 EE and 1 BE) in sea star bioassays. Only 1 BE displayed repellence, indicating that repellents against the sea star are mainly lipophilic. Repellence toward C. femoratus was found in all species in different extracts (10 EE and 12 BE), suggesting that defenses against the amphipod might be both lipophilic and hydrophilic. Interspecific and intraspecific variability of bioactivity was occasionally detected, suggesting possible environmental inductive responses, symbiotic associations, and/or genetic variability. Multivariate analysis revealed similarities among species in relation to bioactivities of EE and/or BE. These findings support the hypothesis that, while in some cases alternative chemical or physical mechanisms may also provide protection, repellent compounds play an important role in Antarctic bryozoans as defenses against predators.

  10. Feeding repellence in Antarctic bryozoans

    NASA Astrophysics Data System (ADS)

    Figuerola, Blanca; Núñez-Pons, Laura; Moles, Juan; Avila, Conxita

    2013-11-01

    The Antarctic sea star Odontaster validus and the amphipod Cheirimedon femoratus are important predators in benthic communities. Some bryozoans are part of the diet of the asteroid and represent both potential host biosubstrata and prey for this omnivorous lysianassid amphipod. In response to such ecological pressure, bryozoans are expected to develop strategies to deter potential predators, ranging from physical to chemical mechanisms. However, the chemical ecology of Antarctic bryozoans has been scarcely studied. In this study we evaluated the presence of defenses against predation in selected species of Antarctic bryozoans. The sympatric omnivorous consumers O. validus and C. femoratus were selected to perform feeding assays with 16 ether extracts (EE) and 16 butanol extracts (BE) obtained from 16 samples that belonged to 13 different bryozoan species. Most species (9) were active (12 EE and 1 BE) in sea star bioassays. Only 1 BE displayed repellence, indicating that repellents against the sea star are mainly lipophilic. Repellence toward C. femoratus was found in all species in different extracts (10 EE and 12 BE), suggesting that defenses against the amphipod might be both lipophilic and hydrophilic. Interspecific and intraspecific variability of bioactivity was occasionally detected, suggesting possible environmental inductive responses, symbiotic associations, and/or genetic variability. Multivariate analysis revealed similarities among species in relation to bioactivities of EE and/or BE. These findings support the hypothesis that, while in some cases alternative chemical or physical mechanisms may also provide protection, repellent compounds play an important role in Antarctic bryozoans as defenses against predators.

  11. Modelling the Antarctic ozone hole

    NASA Technical Reports Server (NTRS)

    Crutzen, P. J.; Bruhl, C.

    1988-01-01

    Researchers performed model calculations of the ozone depletions taking place in the Antarctic lower stratosphere. Making the assumption that odd nitrogen is frozen out on stratospheric haze particles, an analysis is given of how much homogeneous reactions can contribute to ozone loss during September-October. Comparisons with observations indicate the potential importance of reactions with HCl in the polar stratospheric cloud particles.

  12. Cosmogenic records in Antarctic meteorites

    NASA Technical Reports Server (NTRS)

    Goswami, J. N.; Nishiizumi, K.

    1983-01-01

    Aliquot samples of 29 Antarctic L and H chondrites are analyzed for their nuclear track records and Mn-53 activities. The track density in the analyzed samples ranges from 10 to the 4th to approximately 6 x 10 to the 6th per sq cm. A significant finding is the observation of track-rich grains in a set of four L3 chondrites (ALHA 77215, 77216, 77217, and 77252), suspected of belonging to the same fall based on petrographic observations. An additional sample, ALHA 78105, an L6 chondrite, also has track-rich grains. Mn-53 activity is at near saturation level in approximately 65 percent of the analyzed samples, suggesting exposure ages of greater than 10 m.y. in these cases. Very few H chondrites from the 7-m.y. exposure age peak are apparently sampled among the ones investigated in this study. Approximately 6 percent and 4 percent, respectively, of the Antarctic H and L chondrites analyzed thus far for their cosmogenic records have precompaction irradiation features. A combined analysis of Mn-53 and nuclear track data makes it possible to confirm or rule out the proposed pairing of several sets of Antarctic meteorites and to estimate the preatmospheric sizes of some of these meteorites. The results suggest that most of the small Antarctic meteorites (less than 1 kg) have suffered high (greater than 95 percent) ablation mass-loss.

  13. Feeding repellence in Antarctic bryozoans.

    PubMed

    Figuerola, Blanca; Núñez-Pons, Laura; Moles, Juan; Avila, Conxita

    2013-11-01

    The Antarctic sea star Odontaster validus and the amphipod Cheirimedon femoratus are important predators in benthic communities. Some bryozoans are part of the diet of the asteroid and represent both potential host biosubstrata and prey for this omnivorous lysianassid amphipod. In response to such ecological pressure, bryozoans are expected to develop strategies to deter potential predators, ranging from physical to chemical mechanisms. However, the chemical ecology of Antarctic bryozoans has been scarcely studied. In this study we evaluated the presence of defenses against predation in selected species of Antarctic bryozoans. The sympatric omnivorous consumers O. validus and C. femoratus were selected to perform feeding assays with 16 ether extracts (EE) and 16 butanol extracts (BE) obtained from 16 samples that belonged to 13 different bryozoan species. Most species (9) were active (12 EE and 1 BE) in sea star bioassays. Only 1 BE displayed repellence, indicating that repellents against the sea star are mainly lipophilic. Repellence toward C. femoratus was found in all species in different extracts (10 EE and 12 BE), suggesting that defenses against the amphipod might be both lipophilic and hydrophilic. Interspecific and intraspecific variability of bioactivity was occasionally detected, suggesting possible environmental inductive responses, symbiotic associations, and/or genetic variability. Multivariate analysis revealed similarities among species in relation to bioactivities of EE and/or BE. These findings support the hypothesis that, while in some cases alternative chemical or physical mechanisms may also provide protection, repellent compounds play an important role in Antarctic bryozoans as defenses against predators. PMID:24221581

  14. Cloning, expression, purification, and characterization of cold-adapted α-amylase from Pseudoalteromonas arctica GS230.

    PubMed

    Lu, Mingsheng; Wang, Shujun; Fang, Yaowei; Li, Huangzhong; Liu, Shu; Liu, Hongfei

    2010-11-01

    A cold-adapted α-amylase (ParAmy) gene from Pseudoalteromonas arctica GS230 was cloned, sequenced, and expressed as an N-terminus His-tag fusion protein in E. coli. A recombinant protein was produced and purified with DEAE-sepherose ion exchange chromatography and Ni affinity chromatography. The molecular weight of ParAmy was estimated to be 55 KDa with sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). With an optimum temperature for activity 30 °C, ParAmy showed 34.5% of maximum activity at 0 °C and its activity decreased sharply at above 40 °C. ParAmy was stable in the range of pH 7-8.5 at 30 °C for 1 h. ParAmy was activated by Mn(2+), K(+) and Na(+), and inhibited by Hg(2+), Cu(2+), and Fe(3+). N-Bromosuccinimid showed a significant repressive effect on enzyme activity. The K (m) and V (max) values of the α-amylase for soluble starch were 7.28 mg/mL and 13.07 mg/mL min, respectively. This research suggests that Paramy has a good potential to be a cold-stable and alkalitolerant amylase in detergent industry.

  15. Antarctic Krill 454 Pyrosequencing Reveals Chaperone and Stress Transcriptome

    PubMed Central

    Clark, Melody S.; Thorne, Michael A. S.; Toullec, Jean-Yves; Meng, Yan; Guan, Le Luo; Peck, Lloyd S.; Moore, Stephen

    2011-01-01

    Background The Antarctic krill Euphausia superba is a keystone species in the Antarctic food chain. Not only is it a significant grazer of phytoplankton, but it is also a major food item for charismatic megafauna such as whales and seals and an important Southern Ocean fisheries crop. Ecological data suggest that this species is being affected by climate change and this will have considerable consequences for the balance of the Southern Ocean ecosystem. Hence, understanding how this organism functions is a priority area and will provide fundamental data for life history studies, energy budget calculations and food web models. Methodology/Principal Findings The assembly of the 454 transcriptome of E. superba resulted in 22,177 contigs with an average size of 492bp (ranging between 137 and 8515bp). In depth analysis of the data revealed an extensive catalogue of the cellular chaperone systems and the major antioxidant proteins. Full length sequences were characterised for the chaperones HSP70, HSP90 and the super-oxide dismutase antioxidants, with the discovery of potentially novel duplications of these genes. The sequence data contained 41,470 microsatellites and 17,776 Single Nucleotide Polymorphisms (SNPs/INDELS), providing a resource for population and also gene function studies. Conclusions This paper details the first 454 generated data for a pelagic Antarctic species or any pelagic crustacean globally. The classical “stress proteins”, such as HSP70, HSP90, ferritin and GST were all highly expressed. These genes were shown to be over expressed in the transcriptomes of Antarctic notothenioid fish and hypothesized as adaptations to living in the cold, with the associated problems of decreased protein folding efficiency and increased vulnerability to damage by reactive oxygen species. Hence, these data will provide a major resource for future physiological work on krill, but in particular a suite of “stress” genes for studies understanding marine

  16. Climate-dependent evolution of Antarctic ectotherms: An integrative analysis

    NASA Astrophysics Data System (ADS)

    Pörtner, Hans O.

    2006-04-01

    The paper explores the climate-dependent evolution of marine Antarctic fauna and tries to identify key mechanisms involved as well as the driving forces that have caused the physiological and life history characteristics observed today. In an integrative approach it uses the recent concept of oxygen and capacity limited thermal tolerance to identify potential links between molecular, cellular, whole-organism, and ecological characteristics of marine animal life in the Antarctic. As a generalized pattern, minimization of baseline energy costs, for the sake of maximized growth in the cold, appears as one over-arching principle shaping the evolution and functioning of Antarctic marine ectotherms. This conclusion is supported by recent comparisons with (sub-) Arctic ectotherms, where elevated levels of energy turnover result at unstable, including cold temperatures, and are related to wide windows of thermal tolerance and associated metabolic features. At biochemical levels, metabolic regulation at low temperatures in general, is supported by the cold compensation of enzyme kinetic parameters like substrate affinities and turnover numbers, through minute structural modifications of the enzyme molecule. These involve a shift in protein folding, sometimes supported by the replacement of individual amino acids. The hypothesis is developed that efficient metabolic regulation at low rates in Antarctic marine stenotherms occurs through high mitochondrial densities at low capacities and possibly enhanced levels of Arrhenius activation energies or activation enthalpies. This contrasts the more costly patterns of metabolic regulation at elevated rates in cold-adapted eurytherms. Energy savings in Antarctic ectotherms, largely exemplified in fish, typically involve low-cost, diffusive oxygen distribution due to high density of lipid membranes, loss of haemoglobin, myoglobin and the heat shock response, reduced anaerobic capacity, large myocytes with low ion exchange activities

  17. Toxicity of Bioactive and Probiotic Marine Bacteria and Their Secondary Metabolites in Artemia sp. and Caenorhabditis elegans as Eukaryotic Model Organisms

    PubMed Central

    Neu, Anna Katrin; Månsson, Maria; Prol-García, María J.

    2014-01-01

    We have previously reported that some strains belonging to the marine Actinobacteria class, the Pseudoalteromonas genus, the Roseobacter clade, and the Photobacteriaceae and Vibrionaceae families produce both antibacterial and antivirulence compounds, and these organisms are interesting from an applied point of view as fish probiotics or as a source of pharmaceutical compounds. The application of either organisms or compounds requires that they do not cause any side effects, such as toxicity in eukaryotic organisms. The purpose of this study was to determine whether these bacteria or their compounds have any toxic side effects in the eukaryotic organisms Artemia sp. and Caenorhabditis elegans. Arthrobacter davidanieli WX-11, Pseudoalteromonas luteoviolacea S4060, P. piscicida S2049, P. rubra S2471, Photobacterium halotolerans S2753, and Vibrio coralliilyticus S2052 were lethal to either or both model eukaryotes. The toxicity of P. luteoviolacea S4060 could be related to the production of the antibacterial compound pentabromopseudilin, while the adverse effect observed in the presence of P. halotolerans S2753 and V. coralliilyticus S2052 could not be explained by the production of holomycin nor andrimid, the respective antibiotic compounds in these organisms. In contrast, the tropodithietic acid (TDA)-producing bacteria Phaeobacter inhibens DSM17395 and Ruegeria mobilis F1926 and TDA itself had no adverse effect on the target organisms. These results reaffirm TDA-producing Roseobacter bacteria as a promising group to be used as probiotics in aquaculture, whereas Actinobacteria, Pseudoalteromonas, Photobacteriaceae, and Vibrionaceae should be used with caution. PMID:24141121

  18. Toxicity of bioactive and probiotic marine bacteria and their secondary metabolites in Artemia sp. and Caenorhabditis elegans as eukaryotic model organisms.

    PubMed

    Neu, Anna Katrin; Månsson, Maria; Gram, Lone; Prol-García, María J

    2014-01-01

    We have previously reported that some strains belonging to the marine Actinobacteria class, the Pseudoalteromonas genus, the Roseobacter clade, and the Photobacteriaceae and Vibrionaceae families produce both antibacterial and antivirulence compounds, and these organisms are interesting from an applied point of view as fish probiotics or as a source of pharmaceutical compounds. The application of either organisms or compounds requires that they do not cause any side effects, such as toxicity in eukaryotic organisms. The purpose of this study was to determine whether these bacteria or their compounds have any toxic side effects in the eukaryotic organisms Artemia sp. and Caenorhabditis elegans. Arthrobacter davidanieli WX-11, Pseudoalteromonas luteoviolacea S4060, P. piscicida S2049, P. rubra S2471, Photobacterium halotolerans S2753, and Vibrio coralliilyticus S2052 were lethal to either or both model eukaryotes. The toxicity of P. luteoviolacea S4060 could be related to the production of the antibacterial compound pentabromopseudilin, while the adverse effect observed in the presence of P. halotolerans S2753 and V. coralliilyticus S2052 could not be explained by the production of holomycin nor andrimid, the respective antibiotic compounds in these organisms. In contrast, the tropodithietic acid (TDA)-producing bacteria Phaeobacter inhibens DSM17395 and Ruegeria mobilis F1926 and TDA itself had no adverse effect on the target organisms. These results reaffirm TDA-producing Roseobacter bacteria as a promising group to be used as probiotics in aquaculture, whereas Actinobacteria, Pseudoalteromonas, Photobacteriaceae, and Vibrionaceae should be used with caution. PMID:24141121

  19. Antarctic winter mercury and ozone depletion events over sea ice

    NASA Astrophysics Data System (ADS)

    Nerentorp Mastromonaco, M.; Gårdfeldt, K.; Jourdain, B.; Abrahamsson, K.; Granfors, A.; Ahnoff, M.; Dommergue, A.; Méjean, G.; Jacobi, H.-W.

    2016-03-01

    During atmospheric mercury and ozone depletion events in the springtime in polar regions gaseous elemental mercury and ozone undergo rapid declines. Mercury is quickly transformed into oxidation products, which are subsequently removed by deposition. Here we show that such events also occur during Antarctic winter over sea ice areas, leading to additional deposition of mercury. Over four months in the Weddell Sea we measured gaseous elemental, oxidized, and particulate-bound mercury, as well as ozone in the troposphere and total and elemental mercury concentrations in snow, demonstrating a series of depletion and deposition events between July and September. The winter depletions in July were characterized by stronger correlations between mercury and ozone and larger formation of particulate-bound mercury in air compared to later spring events. It appears that light at large solar zenith angles is sufficient to initiate the photolytic formation of halogen radicals. We also propose a dark mechanism that could explain observed events in air masses coming from dark regions. Br2 that could be the main actor in dark conditions was possibly formed in high concentrations in the marine boundary layer in the dark. These high concentrations may also have caused the formation of high concentrations of CHBr3 and CH2I2 in the top layers of the Antarctic sea ice observed during winter. These new findings show that the extent of depletion events is larger than previously believed and that winter depletions result in additional deposition of mercury that could be transferred to marine and terrestrial ecosystems.

  20. Radarsat Antarctic Mapping Project: Antarctic Imaging Campaign 2

    NASA Technical Reports Server (NTRS)

    2001-01-01

    The Radarsat Antarctic Mapping Project is a collaboration between NASA and the Canadian Space Agency to map Antarctica using synthetic aperture radar (SAR). The first Antarctic Mapping Mission (AMM-1) was successfully completed in October 1997. Data from the acquisition phase of the 1997 campaign have been used to achieve the primary goal of producing the first, high-resolution SAR image map of Antarctica. The limited amount of data suitable for interferometric analysis have also been used to produce remarkably detailed maps of surface velocity for a few selected regions. Most importantly, the results from AMM-1 are now available to the general science community in the form of various resolution, radiometrically calibrated and geometrically accurate image mosaics. The second Antarctic imaging campaign occurred during the fall of 2000. Modified from AMM-1, the satellite remained in north looking mode during AMM-2 restricting coverage to regions north of about -80 degrees latitude. But AMM-2 utilized for the first time RADARSAT-1 fine beams providing an unprecedented opportunity to image many of Antarctica's fast glaciers whose extent was revealed through AMM-1 data. AMM-2 also captured extensive data suitable for interferometric analysis of the surface velocity field. This report summarizes the science goals, mission objectives, and project status through the acquisition phase and the start of the processing phase. The reports describes the efforts of team members including Alaska SAR Facility, Jet Propulsion Laboratory, Vexcel Corporation, Goddard Space Flight Center, Wallops Flight Facility, Ohio State University, Environmental Research Institute of Michigan, White Sands Facility, Canadian Space Agency Mission Planning and Operations Groups, and the Antarctic Mapping Planning Group.

  1. Anthropogenic impacts on marine ecosystems in Antarctica.

    PubMed

    Aronson, Richard B; Thatje, Sven; McClintock, James B; Hughes, Kevin A

    2011-03-01

    Antarctica is the most isolated continent on Earth, but it has not escaped the negative impacts of human activity. The unique marine ecosystems of Antarctica and their endemic faunas are affected on local and regional scales by overharvesting, pollution, and the introduction of alien species. Global climate change is also having deleterious impacts: rising sea temperatures and ocean acidification already threaten benthic and pelagic food webs. The Antarctic Treaty System can address local- to regional-scale impacts, but it does not have purview over the global problems that impinge on Antarctica, such as emissions of greenhouse gases. Failure to address human impacts simultaneously at all scales will lead to the degradation of Antarctic marine ecosystems and the homogenization of their composition, structure, and processes with marine ecosystems elsewhere.

  2. Evolution of the complement system C3 gene in Antarctic teleosts.

    PubMed

    Melillo, Daniela; Varriale, Sonia; Giacomelli, Stefano; Natale, Lenina; Bargelloni, Luca; Oreste, Umberto; Pinto, Maria Rosaria; Coscia, Maria Rosaria

    2015-08-01

    Notothenioidei are typical Antarctic teleosts evolved to adapt to the very low temperatures of the Antarctic seas. Aim of the present paper is to investigate sequence and structure of C3, the third component of the complement system of the notothenioid Trematomus bernacchii and Chionodraco hamatus. We determined the complete nucleotide sequence of two C3 isoforms of T. bernacchii and a single C3 isoform of C. hamatus. These sequences were aligned against other homologous teleost sequences to check for the presence of diversifying selection. Evidence for positive selection was observed in the evolutionary lineage of Antarctic teleost C3 sequences, especially in that of C. hamatus, the most recently diverged species. Adaptive selection affected numerous amino acid positions including three residues located in the anaphylatoxin domain. In an attempt to evaluate the link between sequence variants and specific structural features, we constructed molecular models of Antarctic teleost C3s, of their proteolytic fragments C3b and C3a, and of the corresponding molecules of the phylogenetically related temperate species Epinephelus coioides, using human crystallographic structures as templates. Subsequently, we compared dynamic features of these models by molecular dynamics simulations and found that the Antarctic C3s models show higher flexibility, which likely allows for more pronounced movements of both the TED domain in C3b and the carboxyl-terminal region of C3a. As such dynamic features are associated to positively selected sites, it appears that Antarctic teleost C3 molecules positively evolved toward an increased flexibility, to cope with low kinetic energy levels of the Antarctic marine environment.

  3. Freezing in the Antarctic limpet, Nacella concinna.

    PubMed

    Hawes, T C; Worland, M R; Bale, J S

    2010-08-01

    The process of organismal freezing in the Antarctic limpet, Nacella concinna, is complicated by molluscan biology. Internal ice formation is, in particular, mediated by two factors: (a) the provision of an inoculative target for ice formation in the exposed mucus-secreting foot; and (b) osmoconformity to the marine environment. With regard to the first, direct observations of the independent freezing of pedal mucus support the hypothesis that internal ice formation is delayed by the mucal film. As to the second, ice nucleation parametrics of organismal tissue (head, midgut, gonad, foot) and mucus in both inter- and subtidal populations were characterized by high melting points (range=-4.61 to -6.29 degrees C), with only c.50% of a given sample osmotically active. At this stage it would be premature to ascribe a cryo-adaptive function to the mucus as the protective effects are more readily attributed to the physical properties of the secretion (i.e. viscosity) and their corresponding effects on the rate of heat transfer. As it is difficult to thermally distinguish between the freezing of mucus and the rest of the animal, the question as to whether it is tolerant of internal as well as external ice formation remains problematic, although it may be well suited to the osmotic stresses of organismal freezing. PMID:20599885

  4. The safety band of Antarctic ice shelves

    NASA Astrophysics Data System (ADS)

    Fürst, Johannes Jakob; Durand, Gaël; Gillet-Chaulet, Fabien; Tavard, Laure; Rankl, Melanie; Braun, Matthias; Gagliardini, Olivier

    2016-05-01

    The floating ice shelves along the seaboard of the Antarctic ice sheet restrain the outflow of upstream grounded ice. Removal of these ice shelves, as shown by past ice-shelf recession and break-up, accelerates the outflow, which adds to sea-level rise. A key question in predicting future outflow is to quantify the extent of calving that might precondition other dynamic consequences and lead to loss of ice-shelf restraint. Here we delineate frontal areas that we label as `passive shelf ice’ and that can be removed without major dynamic implications, with contrasting results across the continent. The ice shelves in the Amundsen and Bellingshausen seas have limited or almost no `passive’ portion, which implies that further retreat of current ice-shelf fronts will yield important dynamic consequences. This region is particularly vulnerable as ice shelves have been thinning at high rates for two decades and as upstream grounded ice rests on a backward sloping bed, a precondition to marine ice-sheet instability. In contrast to these ice shelves, Larsen C Ice Shelf, in the Weddell Sea, exhibits a large `passive’ frontal area, suggesting that the imminent calving of a vast tabular iceberg will be unlikely to instantly produce much dynamic change.

  5. Antarctic Yeasts: Biodiversity and Potential Applications

    NASA Astrophysics Data System (ADS)

    Shivaji, S.; Prasad, G. S.

    This review is an attempt in cataloguing the diversity of yeasts in Antarctica, highlight their biotechnological potential and understand the basis of adaptation to low temperature. As of now several psychrophilic and psychrotolerant yeasts from Antarctic soils and marine waters have been characterized with respect to their growth characteristics, ecological distribution and taxonomic significance. Interestingly most of these species belonged to basidiomycetous yeasts which as a group are known for their ability to circumvent and survive under stress conditions. Simultaneously their possible role as work horses in the biotechnological industry was recognized due to their ability to produce novel enzymes and biomolecules such as agents for the breakdown of xenobiotics, and novel pharmaceutical chemi cals. The high activity of psychrophilic enzymes at low and moderate temperatures offers potential economic benefits. As of now lipases from Pseudozyma antarctica have been extensively studied to understand their unique thermal stability at 90°C and also because of its use in the pharmaceutical, agriculture, food, cosmetics and chemical industry. A few of the other enzymes which have been studied include extracellular alpha-amylase and glucoamylase from the yeast Pseudozyma antarctica (Candida antarctica), an extra-cellular protease from Cryptococcus humicola, an aspartyl proteinase from Cryptococcus humicola, a novel extracellular subtilase from Leucosporidium antarcticum, and a xylanase from Cryptococcus adeliensis

  6. Chemical studies of differentiated meteorites. I - Labile trace elements in Antarctic and non-Antarctic eucrites

    NASA Technical Reports Server (NTRS)

    Paul, Rick L.; Lipschutz, Michael E.

    1990-01-01

    Element contents of Ag, Au, Bi, Cd, Co, Cs, Ga, In, Rb, Sb, Se, Te, Tl, U, and Zn were analyzed, using RNAA, in 25 Antarctic and nine non-Antarctic eucrites to determine whether these two populations differ significantly in thermal history and derive from the same or different eucrite parent body. Data for these 15 elements indicate that basaltic Antarctic and non-Antarctic eucrite populations reflect the same genetic processes and, hence, come from the same parent asteroid.

  7. United States Antarctic Resource Center (USARC)

    USGS Publications Warehouse

    ,

    2001-01-01

    The U.S. Antarctic Resource Center (USARC) is our Nation?s depository for Antarctic maps, charts, geodetic ground control, satellite images, aerial photographs, publications, slides, and video tapes. These resources are items produced by Antarctic Treaty nations in support of their activities in Antarctica and provided to the USARC in compliance with a standing resolution of the treaty providing for exchange of information. The U.S. Geological Survey (USGS) maintains these materials through an interagency cooperative agreement with the National Science Foundation (NSF), which also supports the USGS Antarctic Mapping Program. The USARC develops and maintains the Antarctic Web site (usarc.usgs.gov) and its supporting data bases, as well as providing access to other online digital data bases, such as the Atlas of Antarctic Resources.

  8. The Antarctic Region: Geological Evolution and Processes

    NASA Astrophysics Data System (ADS)

    Quilty, Patrick G.

    The Scientific Committee on Antarctic Research (SCAR) supports discipline- and issue-based meetings in Antarctic research, and these are forums for announcing developments in Antarctic science. Refereed symposia proceedings normally follow and generate a number of volumes that almost constitute serial publication. Meetings in the Earth sciences occur at roughly 4-year intervals. The resulting volumes cover Antarctic Earth science generally and provide convenient access to periodic bibliographic updates.The Antarctic Region: Geological Evolution and Processes is a collection of the Proceedings of the VII International Symposium on Antarctic Earth Sciences, held in Siena, Italy, in 1995 and sponsored by SCAR. It was by far the largest such meeting held to date—the next will be in New Zealand in 1999—but the book, even as large as it is, contains only a portion of the papers presented.

  9. Iodine-129 in snow and seawater in the Antarctic: level and source.

    PubMed

    Xing, Shan; Hou, Xiaolin; Aldahan, Ala; Possnert, Göran; Shi, Keliang; Yi, Peng; Zhou, Weijian

    2015-06-01

    Anthropogenic (129)I has been released to the environment in different ways and chemical species by human nuclear activities since the 1940s. These sources provide ideal tools to trace the dispersion of volatile pollutants in the atmosphere. Snow and seawater samples collected in Bellingshausen, Amundsen, and Ross Seas in Antarctica in 2011 were analyzed for (129)I and (127)I, including organic forms; it was observed that (129)I/(127)I atomic ratios in the Antarctic surface seawater ((6.1-13) × 10(-12)) are about 2 orders of magnitude lower than those in the Antarctic snow ((6.8-9.5) × 10(-10)), but 4-6 times higher than the prenuclear level (1.5 × 10(-12)), indicating a predominantly anthropogenic source of (129)I in the Antarctic environment. The (129)I level in snow in Antarctica is 2-4 orders of magnitude lower than that in the Northern Hemisphere, but is not significantly higher than that observed in other sites in the Southern Hemisphere. This feature indicates that (129)I in Antarctic snow mainly originates from atmospheric nuclear weapons testing from 1945 to 1980; resuspension and re-emission of the fallout (129)I in the Southern Hemisphere maintains the (129)I level in the Antarctic atmosphere. (129)I directly released to the atmosphere and re-emitted marine discharged (129)I from reprocessing plants in Europe might not significantly disperse to Antarctica. PMID:25944707

  10. Iodine-129 in snow and seawater in the Antarctic: level and source.

    PubMed

    Xing, Shan; Hou, Xiaolin; Aldahan, Ala; Possnert, Göran; Shi, Keliang; Yi, Peng; Zhou, Weijian

    2015-06-01

    Anthropogenic (129)I has been released to the environment in different ways and chemical species by human nuclear activities since the 1940s. These sources provide ideal tools to trace the dispersion of volatile pollutants in the atmosphere. Snow and seawater samples collected in Bellingshausen, Amundsen, and Ross Seas in Antarctica in 2011 were analyzed for (129)I and (127)I, including organic forms; it was observed that (129)I/(127)I atomic ratios in the Antarctic surface seawater ((6.1-13) × 10(-12)) are about 2 orders of magnitude lower than those in the Antarctic snow ((6.8-9.5) × 10(-10)), but 4-6 times higher than the prenuclear level (1.5 × 10(-12)), indicating a predominantly anthropogenic source of (129)I in the Antarctic environment. The (129)I level in snow in Antarctica is 2-4 orders of magnitude lower than that in the Northern Hemisphere, but is not significantly higher than that observed in other sites in the Southern Hemisphere. This feature indicates that (129)I in Antarctic snow mainly originates from atmospheric nuclear weapons testing from 1945 to 1980; resuspension and re-emission of the fallout (129)I in the Southern Hemisphere maintains the (129)I level in the Antarctic atmosphere. (129)I directly released to the atmosphere and re-emitted marine discharged (129)I from reprocessing plants in Europe might not significantly disperse to Antarctica.

  11. Cryptic species diversity in sub-Antarctic islands: A case study of Lepidonotothen.

    PubMed

    Dornburg, Alex; Federman, Sarah; Eytan, Ron I; Near, Thomas J

    2016-11-01

    The marine fauna of the Southern Ocean is well known for an impressive adaptive radiation of fishes, the notothenioids. However, when compared to other marine areas, the frigid waters of the Southern Ocean also contain a seemingly large proportion of cryptic species. The documented instances of speciation in the absence of morphological change are largely observed in invertebrate taxa, in particular around peri- and sub-Antarctic islands such as South Georgia, which has been dubbed a cryptic species hotspot. This prevalence of cryptic species raises the question of how generalizable these patterns are for Antarctic vertebrates. Here we examine aspects of genotype and phenotype in an Antarctic notothenioid fish species, Lepidonotothen nudifrons, which is distributed in near shore habitats of the Antarctic Peninsula, South Orkney Islands, South Georgia, and the South Sandwich Islands. The results of our analyses show that L. nudifrons comprises two species. We highlight that cryptic species are phenomena not restricted to invertebrate lineages, raising the possibility that the species diversity of notothenioids and other Southern Ocean fishes is under-described. In addition, our findings raise several questions about the evolutionary origin and maintenance of morphological stasis in one of the most extreme habitats on earth.

  12. Open-ocean barriers to dispersal: a test case with the Antarctic Polar Front and the ribbon worm Parborlasia corrugatus (Nemertea: Lineidae).

    PubMed

    Thornhill, Daniel J; Mahon, Andrew R; Norenburg, Jon L; Halanych, Kenneth M

    2008-12-01

    Open-ocean environments provide few obvious barriers to the dispersal of marine organisms. Major currents and/or environmental gradients potentially impede gene flow. One system hypothesized to form an open-ocean dispersal barrier is the Antarctic Polar Front, an area characterized by marked temperature change, deep water, and the high-flow Antarctic Circumpolar current. Despite these potential isolating factors, several invertebrate species occur in both regions, including the broadcast-spawning nemertean worm Parborlasia corrugatus. To empirically test for the presence of an open-ocean dispersal barrier, we sampled P. corrugatus and other nemerteans from southern South America, Antarctica, and the sub-Antarctic islands. Diversity was assessed by analyzing mitochondrial 16S rRNA and cytochrome c oxidase subunit I sequence data with Bayesian inference and tcs haplotype network analysis. Appropriate neutrality tests were also employed. Although our results indicate a single well-mixed lineage in Antarctica and the sub-Antarctic, no evidence for recent gene flow was detected between this population and South American P. corrugatus. Thus, even though P. corrugatus can disperse over large geographical distances, physical oceanographic barriers (i.e. Antarctic Polar Front and Antarctic Circumpolar Current) between continents have likely restricted dispersal over evolutionary time. Genetic distances and haplotype network analysis between South American and Antarctic/sub-Antarctic P. corrugatus suggest that these two populations are possibly two cryptic species.

  13. Geographic names of the Antarctic

    USGS Publications Warehouse

    ,; ,; ,; ,; Alberts, Fred G.

    1995-01-01

    This gazetteer contains 12,710 names approved by the United States Board on Geographic Names and the Secretary of the Interior for features in Antarctica and the area extending northward to the Antarctic Convergence. Included in this geographic area, the Antarctic region, are the off-lying South Shetland Islands, the South Orkney Islands, the South Sandwich Islands, South Georgia, Bouvetøya, Heard Island, and the Balleny Islands. These names have been approved for use by U.S. Government agencies. Their use by the Antarctic specialist and the public is highly recommended for the sake of accuracy and uniformity. This publication, which supersedes previous Board gazetteers or lists for the area, contains names approved as recently as December 1994. The basic name coverage of this gazetteer corresponds to that of maps at the scale of 1:250,000 or larger for coastal Antarctica, the off-lying islands, and isolated mountains and ranges of the continent. Much of the interior of Antarctica is a featureless ice plateau. That area has been mapped at a smaller scale and is nearly devoid of toponyms. All of the names are for natural features, such as mountains, glaciers, peninsulas, capes, bays, islands, and subglacial entities. The names of scientific stations have not been listed alphabetically, but they may appear in the texts of some decisions. For the names of submarine features, reference should be made to the Gazetteer of Undersea Features, 4th edition, U.S. Board on Geographic Names, 1990.

  14. Heavy metals in Antarctic organisms

    SciTech Connect

    Moreno, J.E.A. de; Moreno, V.J.; Gerpe, M.S.; Vodopivez, C.

    1997-02-01

    To evaluate levels of essential (zinc and copper) and non-essential (mercury and cadmium) heavy metals, 34 species of organisms from different areas close to the Antarctic Peninsula were analysed. These included algae, filter-feeders, omnivorous invertebrates and vertebrates. Mercury was not detected, while cadmium was found in the majority of organisms analysed (detection limit was 0.05 ppm for both metals). The highest cadmium concentration was observed in the starfish Odontaster validus. Anthozoans, sipunculids and nudibranchs showed maximum levels of zinc, while the highest copper level was found in the gastropod Trophon brevispira. Mercury and cadmium levels in fishes were below the detection limit. Concentrations of essential and non-essential metals in birds were highest in liver followed by muscle and eggs. Cadmium and mercury levels in muscle of southern elephant seals were above the detection limit, whereas in Antarctic fur seals they were below it. The objective of the study was to gather baseline information for metals in Antarctic Ocean biota that may be needed to detect, measure and monitor future environmental changes. 46 refs., 7 figs., 8 tabs.

  15. Antarctic skuas recognize individual humans.

    PubMed

    Lee, Won Young; Han, Yeong-Deok; Lee, Sang-Im; Jablonski, Piotr G; Jung, Jin-Woo; Kim, Jeong-Hoon

    2016-07-01

    Recent findings report that wild animals can recognize individual humans. To explain how the animals distinguish humans, two hypotheses are proposed. The high cognitive abilities hypothesis implies that pre-existing high intelligence enabled animals to acquire such abilities. The pre-exposure to stimuli hypothesis suggests that frequent encounters with humans promote the acquisition of discriminatory abilities in these species. Here, we examine individual human recognition abilities in a wild Antarctic species, the brown skua (Stercorarius antarcticus), which lives away from typical human settlements and was only recently exposed to humans due to activities at Antarctic stations. We found that, as nest visits were repeated, the skua parents responded at further distances and were more likely to attack the nest intruder. Also, we demonstrated that seven out of seven breeding pairs of skuas selectively responded to a human nest intruder with aggression and ignored a neutral human who had not previously approached the nest. The results indicate that Antarctic skuas, a species that typically inhabited in human-free areas, are able to recognize individual humans who disturbed their nests. Our findings generally support the high cognitive abilities hypothesis, but this ability can be acquired during a relatively short period in the life of an individual as a result of interactions between individual birds and humans.

  16. Dissolution and analysis of amorphous silica in marine sediments.

    USGS Publications Warehouse

    Eggimann, D.W.; Manheim, F. T.; Betzer, P.R.

    1980-01-01

    The analytical estimation of amorphous silica in selected Atlantic and Antarctic Ocean sediments, the U.S.G.S. standard marine mud (MAG-1), A.A.P.G. clays, and samples from cultures of a marine diatom, Hemidiscus, has been examined. Our values for amorphous silica-rich circum-Antarctic sediments are equal to or greater than literature values, whereas our values for a set of amorphous silica-poor sediments from a transect of the N. Atlantic at 11oN, after appropriate correction for silica released from clays, are significantly lower than previous estimates from the same region. -from Authors

  17. Selective control of the Prorocentrum minimum harmful algal blooms by a novel algal-lytic bacterium Pseudoalteromonas haloplanktis AFMB-008041.

    PubMed

    Kim, Jeong-Dong; Kim, Ji-Young; Park, Jae-Kweon; Lee, Choul-Gyun

    2009-01-01

    In this study, we examined the algal-lytic activities and biological control mechanisms of Pseudoalteromonas haloplanktis AFMB-08041, which was isolated from surface seawater obtained at Masan Bay in Korea. In addition, we assessed whether AFMB-08041 could be used as a biocontrol agent to regulate harmful dinoflagellate Prorocentrum minimum. From these experiments, we found that the inoculation of AFMB-08041 at a final density of 2.5 x 10(4) cfu ml(-1) caused P. minimum cells to degrade (>90%) within 5 days. The algal cells were lysed through an indirect attack by the AFMB-08041 bacterial strain. Our results also suggest that the algal-lytic compounds produced by AFMB-08041 may have beta-glucosidase activity. However, P. haloplanktis AFMB-08041 was not able to suppress the growth of other alga such as Alexandrium tamarense, Akashiwo sanguinea, Cochlodinium polykrikoides, Gymnodinium catenatum, and Heterosigma akashiwo. Moreover, we observed that the growth of Prorocentrum dentatum, which has a very similar morphological structure to P. minimum, was also effectively suppressed by P. haloplanktis AFMB-08041. Therefore, the effect of AFMB-08041 on P. minimum degradation appears to be species specific. When testing in an indoor mesocosms, P. haloplanktis AFMB-08041 reduced the amount of viable P. minimum cells by 94.5% within 5 days after inoculation. The combined results of this study clearly demonstrate that this bacterium is capable of regulating the harmful algal blooms of P. minimum. In addition, these results will enable us to develop a new strategy for the anthropogenic control of harmful algal bloom-forming species in nature.

  18. Comparisons of Antarctic and non-Antarctic achondrites and possible origin of the differences

    NASA Astrophysics Data System (ADS)

    Takeda, H.

    1991-01-01

    Pairing information on Yamato chondrites was obtained using mineralogical techniques, and the results are used to discuss differences between Antarctic and non-Antarctic achondrites, their sources, and their relation to asteroids. It was found that the Antarctic HED (howardites, eucrites, diogenites) achondrites and ureilites differ from non-Antarctic specimens by the following two criteria: (1) polymict eucrites excluding those with howarditic affinity are not found in the non-Antarctic collections, and (2) magnesian ureilites and augite-bearing ureilites are found only in Antarctica. It is suggested that the Yamato diogenites may represent falls on restricted areas in the distant past.

  19. Geological and geomorphological insights into Antarctic ice sheet evolution.

    PubMed

    Sugden, David E; Bentley, Michael J; O Cofaigh, Colm

    2006-07-15

    Technical advances in the study of ice-free parts of Antarctica can provide quantitative records that are useful for constraining and refining models of ice sheet evolution and behaviour. Such records improve our understanding of system trajectory, influence the questions we ask about system stability and help to define the ice-sheet processes that are relevant on different time-scales. Here, we illustrate the contribution of cosmogenic isotope analysis of exposed bedrock surfaces and marine geophysical surveying to the understanding of Antarctic ice sheet evolution on a range of time-scales. In the Dry Valleys of East Antarctica, 3He dating of subglacial flood deposits that are now exposed on mountain summits provide evidence of an expanded and thicker Mid-Miocene ice sheet. The survival of surface boulders for approximately 14Myr, the oldest yet measured, demonstrates exceptionally low rates of subsequent erosion and points to the persistence and stability of the dry polar desert climate since that time. Increasingly, there are constraints on West Antarctic ice sheet fluctuations during Quaternary glacial cycles. In the Sarnoff Mountains of Marie Byrd Land in West Antarctica, 10Be and 26Al cosmogenic isotope analysis of glacial erratics and bedrock reveal steady thinning of the ice sheet from 10400 years ago to the present, probably as a result of grounding line retreat. In the Antarctic Peninsula, offshore analysis reveals an extensive ice sheet at the last glacial maximum. Based on radiocarbon dating, deglaciation began by 17000cal yr BP and was complete by 9500cal yr BP. Deglaciation of the west and east sides of the Antarctic Peninsula ice sheet occurred at different times and rates, but was largely complete by the Early Holocene. At that time ice shelves were less extensive on the west side of the Antarctic Peninsula than they are today. The message from the past is that individual glacier drainage basins in Antarctica respond in different and distinctive

  20. Bacterial diversity of autotrophic enriched cultures from remote, glacial Antarctic, Alpine and Andean aerosol, snow and soil samples

    NASA Astrophysics Data System (ADS)

    González-Toril, E.; Amils, R.; Delmas, R. J.; Petit, J.-R.; Komárek, J.; Elster, J.

    2009-01-01

    Four different communities and one culture of autotrophic microbial assemblages were obtained by incubation of samples collected from high elevation snow in the Alps (Mt. Blanc area) and the Andes (Nevado Illimani summit, Bolivia), from Antarctic aerosol (French station Dumont d'Urville) and a maritime Antarctic soil (King George Island, South Shetlands, Uruguay Station Artigas), in a minimal mineral (oligotrophic) media. Molecular analysis of more than 200 16S rRNA gene sequences showed that all cultured cells belong to the Bacteria domain. Phylogenetic comparison with the currently available rDNA database allowed sequences belonging to Proteobacteria Alpha-, Beta- and Gamma-proteobacteria), Actinobacteria and Bacteroidetes phyla to be identified. The Andes snow culture was the richest in bacterial diversity (eight microorganisms identified) and the marine Antarctic soil the poorest (only one). Snow samples from Col du Midi (Alps) and the Andes shared the highest number of identified microorganisms (Agrobacterium, Limnobacter, Aquiflexus and two uncultured Alphaproteobacteria clones). These two sampling sites also shared four sequences with the Antarctic aerosol sample (Limnobacter, Pseudonocardia and an uncultured Alphaproteobacteriaclone). The only microorganism identified in the Antarctica soil (Brevundimonas sp.) was also detected in the Antarctic aerosol. Most of the identified microorganisms had been detected previously in cold environments, marine sediments soils and rocks. Air current dispersal is the best model to explain the presence of very specific microorganisms, like those identified in this work, in environments very distant and very different from each other.

  1. Ecological roles and biotechnological applications of marine and intertidal microbial biofilms.

    PubMed

    Mitra, Sayani; Sana, Barindra; Mukherjee, Joydeep

    2014-01-01

    This review is a retrospective of ecological effects of bioactivities produced by biofilms of surface-dwelling marine/intertidal microbes as well as of the industrial and environmental biotechnologies developed exploiting the knowledge of biofilm formation. Some examples of significant interest pertaining to the ecological aspects of biofilm-forming species belonging to the Roseobacter clade include autochthonous bacteria from turbot larvae-rearing units with potential application as a probiotic as well as production of tropodithietic acid and indigoidine. Species of the Pseudoalteromonas genus are important examples of successful surface colonizers through elaboration of the AlpP protein and antimicrobial agents possessing broad-spectrum antagonistic activity against medical and environmental isolates. Further examples of significance comprise antiprotozoan activity of Pseudoalteromonas tunicata elicited by violacein, inhibition of fungal colonization, antifouling activities, inhibition of algal spore germination, and 2-n-pentyl-4-quinolinol production. Nitrous oxide, an important greenhouse gas, emanates from surface-attached microbial activity of marine animals. Marine and intertidal biofilms have been applied in the biotechnological production of violacein, phenylnannolones, and exopolysaccharides from marine and tropical intertidal environments. More examples of importance encompass production of protease, cellulase, and xylanase, melanin, and riboflavin. Antifouling activity of Bacillus sp. and application of anammox bacterial biofilms in bioremediation are described. Marine biofilms have been used as anodes and cathodes in microbial fuel cells. Some of the reaction vessels for biofilm cultivation reviewed are roller bottle, rotating disc bioreactor, polymethylmethacrylate conico-cylindrical flask, fixed bed reactor, artificial microbial mats, packed-bed bioreactors, and the Tanaka photobioreactor. PMID:24817086

  2. Extinction and recolonization of maritime Antarctica in the limpet Nacella concinna (Strebel, 1908) during the last glacial cycle: toward a model of Quaternary biogeography in shallow Antarctic invertebrates.

    PubMed

    González-Wevar, C A; Saucède, T; Morley, S A; Chown, S L; Poulin, E

    2013-10-01

    Quaternary glaciations in Antarctica drastically modified geographical ranges and population sizes of marine benthic invertebrates and thus affected the amount and distribution of intraspecific genetic variation. Here, we present new genetic information in the Antarctic limpet Nacella concinna, a dominant Antarctic benthic species along shallow ice-free rocky ecosystems. We examined the patterns of genetic diversity and structure in this broadcast spawner along maritime Antarctica and from the peri-Antarctic island of South Georgia. Genetic analyses showed that N. concinna represents a single panmictic unit in maritime Antarctic. Low levels of genetic diversity characterized this population; its median-joining haplotype network revealed a typical star-like topology with a short genealogy and a dominant haplotype broadly distributed. As previously reported with nuclear markers, we detected significant genetic differentiation between South Georgia Island and maritime Antarctica populations. Higher levels of genetic diversity, a more expanded genealogy and the presence of more private haplotypes support the hypothesis of glacial persistence in this peri-Antarctic island. Bayesian Skyline plot and mismatch distribution analyses recognized an older demographic history in South Georgia. Approximate Bayesian computations did not support the persistence of N. concinna along maritime Antarctica during the last glacial period, but indicated the resilience of the species in peri-Antarctic refugia (South Georgia Island). We proposed a model of Quaternary Biogeography for Antarctic marine benthic invertebrates with shallow and narrow bathymetric ranges including (i) extinction of maritime Antarctic populations during glacial periods; (ii) persistence of populations in peri-Antarctic refugia; and (iii) recolonization of maritime Antarctica following the deglaciation process.

  3. Quaternary and Tertiary microfossils from beneath Ice Stream B: Evidence for a dynamic West Antarctic Ice Sheet history

    NASA Astrophysics Data System (ADS)

    Scherer, Reed P.

    1991-10-01

    Some glaciologists have suggested that the West Antarctic Ice Sheet, which is grounded well below sea level, may be susceptible to rapid grounding-line retreat and disintegration. However, until now, geologic evidence of previous ice sheet "collapses" has been lacking. Sediments that have recently been collected from beneath the West Antarctic Ice Sheet at Ice Stream B contain direct evidence of ice-free conditions in the West Antarctic interior during certain Cenozoic intervals, both prior to and subsequent to the development of grounded ice sheets in West Antarctica. The sediments contain rare but diverse microfossils that represent a wide variety of biostratigraphic ages and depositional environments. Microfossils present include relatively common marine and non-marine diatoms and sponge spicules, plus rare foraminifera, nannofossils, radiolarians, silicoflagellates, chrysophyte cysts and palynomorphs. Clasts of Neogene freshwater diatomite demonstrate the former presence of large lake systems in West Antarctica, possibly as part the Cenozoic West Antarctica rift system. Age-diagnostic marine fossils in the sediment include Late Paleogene calcareous nannofossils and planktonic foraminifera, Miocene marine planktonic diatoms and, significantly, late Pleistocene marine diatoms. Relatively common late Miocene diatoms probably reflect marine deposition prior to initiation of a dominantly glacial phase in West Antarctica. It is likely that Pliocene and early Pleistocene diatoms were deposited in the West Antarctic interior during certain warm interglacials, but these have been eroded and transported toward the continental shelf edge during repeated ice sheet expansions. The late Pleistocene diatoms from Upstream B were deposited in the West Antarctic interior basins during a marine phase, subsequent to an ice sheet collapse, during at least one late Pleistocene interglacial. This discovery provides an indication of the complex history of the West Antarctic Ice Sheet

  4. Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with Antarctic assemblages.

    PubMed

    Bano, Nasreen; Ruffin, Shomari; Ransom, Briana; Hollibaugh, James T

    2004-02-01

    Archaea assemblages from the Arctic Ocean and Antarctic waters were compared by PCR-denaturing gradient gel electrophoresis (DGGE) analysis of 16S rRNA genes amplified using the Archaea-specific primers 344f and 517r. Inspection of the DGGE fingerprints of 33 samples from the Arctic Ocean (from SCICEX submarine cruises in 1995, 1996, and 1997) and 7 Antarctic samples from Gerlache Strait and Dallman Bay revealed that the richness of Archaea assemblages was greater in samples from deep water than in those from the upper water column in both polar oceans. DGGE banding patterns suggested that most of the Archaea ribotypes were common to both the Arctic Ocean and the Antarctic Ocean. However, some of the Euryarchaeota ribotypes were unique to each system. Cluster analysis of DGGE fingerprints revealed no seasonal variation but supported depth-related differences in the composition of the Arctic Ocean Archaea assemblage. The phylogenetic composition of the Archaea assemblage was determined by cloning and then sequencing amplicons obtained from the Archaea-specific primers 21f and 958r. Sequences of 198 clones from nine samples covering three seasons and all depths grouped with marine group I Crenarchaeota (111 clones), marine group II Euryarchaeota (86 clones), and group IV Euryarchaeota (1 clone). A sequence obtained only from a DGGE band was similar to those of the marine group III Euryarchaeota: PMID:14766555

  5. Characterization and Genome Sequencing of a Novel Bacteriophage PH101 Infecting Pseudoalteromonas marina BH101 from the Yellow Sea of China.

    PubMed

    Wang, Duo-bing; Sun, Meng-qi; Shao, Hong-bing; Li, Yan; Meng, Xue; Liu, Zhao-yang; Wang, Min

    2015-11-01

    A novel Pseudoalteromonas marina bacteriophage, PH101, specifically infecting Pseudoalteromonas BH101 was isolated from the water sample of the Yellow Sea of China using the agar overlay method. 16S rDNA sequence identification was used to identify the host bacteria. Efficiency of infection, multiplicity of infection value, morphological characterization, one-step growth curve, and host range of the bacteriophage were determined. Purified PH101 genomic DNA was extracted and its genome was completely sequenced and analyzed. The phage morphology showed that PH101 belongs to the Myoviridae family with a head of 60 nm in diameter and a tail of 40 nm with a tail fiber of 10-20 nm. Microbiological characterization demonstrated that phage PH101 is stable at a wide range of temperatures (0-70 °C) and showed acid and alkaline resistance (pH 3-12). The one-step growth curve showed a latent period of about 20 min, a rise period of 20 min, and a burst size of about 31.6 virions. The genome sequencing and bioinformatic analysis shows that phage PH101 was a novel bacteriophage which was found to consist of a linear, double-stranded 131,903-bp DNA molecule with a GC content of 37.36 % and 228 putative open reading frames without RNA, which were classified into seven functional groups, including phage structure, adsorption, packaging, gene transfer protease, terminase, DNA binding, and regulation.

  6. JCADM, new directions in Antarctic data management

    NASA Astrophysics Data System (ADS)

    Campbell, H.; de Bruin, T. F.

    2008-12-01

    The Joint Committee on Antarctic Data Management (JCADM) was established by the Scientific Committee on Antarctic Research (SCAR) and the Council of Managers of National Antarctic Programs (COMNAP), to assist in the fulfilment of the data management obligations imposed by the Antarctic Treaty (section III.1.c): "Scientific observations and results from Antarctica shall be exchanged and made freely available." JCADM comprises representatives of the National Antarctic Data Centres or national points of contact. Currently 31 nations around the world are represented in JCADM. So far, JCADM has been focussing on the coordination of the Antarctic Master Directory (AMD), the internationally accessible, web-based, searchable record of Antarctic and Southern Ocean data set descriptions. The AMD is directly integrated into the international Global Change Master Directory (GCMD) to help further merge Antarctic science into global science. The AMD is a resource for scientists to advertise the data they have collected and to search for data they may need. Currently, JCADM is in a transition phase, moving forward to provide data access. Existing systems and web services technology will be used as much as possible, to increase efficiency and prevent 're-inventing the wheel' This poster will give an overview of this process, the current status and the expected results.

  7. Antarctic Meteorite Newsletter, Volume 28, Number 2

    NASA Technical Reports Server (NTRS)

    Righter, Kevin (Editor); Satterwhite, Cecilia (Editor)

    2005-01-01

    This newsletter contains classifications for 274 new meteorites from the 2003 and 2004 ANtarctic Search for METeorites (ANSMET) collections. They include samples from the Cumulus Hills, Larkman Nunatak, LaPaz Ice Field, MacAlpine Hills, Dominion Range, Miller Range, Roberts Massif, and Sandford Cliffs. Tables are provided of the newly classified Antarctic meteorites, meteorites classified by type, and tentative pairings petrographic descriptions.

  8. Solar UVB-induced DNA damage and photoenzymatic DNA repair in antarctic zooplankton

    SciTech Connect

    Malloy, K.D.; Holman, M.A.; Mitchell, D.

    1997-02-18

    The detrimental effects of elevated intensities of mid-UV radiation (UVB), a result of stratospheric ozone depletion during the austral spring, on the primary producers of the Antarctic marine ecosystem have been well documented. Here we report that natural populations of Antarctic zooplankton also sustain significant DNA damage [measured as cyclobutane pyrimidine dimers (CPDs)] during periods of increased UVB flux. This is the first direct evidence that increased solar UVB may result in damage to marine organisms other than primary producers in Antarctica. The extent of DNA damage in pelagic icefish eggs correlated with daily incident UVB irradiance, reflecting the difference between acquisition and repair of CPDs. Patterns of DNA damage in fish larvae did not correlated with daily UVB flux, possibly due to different depth distributions and/or different capacities for DNA repair. Clearance of CPDs by Antarctic fish and krill was mediated primarily by the photoenzymatic repair system. Although repair rates were large for all species evaluated, they were apparently inadequate to prevent the transient accumulation of substantial CPD burdens. The capacity for DNA repair in Antarctic organisms was highest in those species whose early life history stages occupy the water column during periods of ozone depletion (austral spring) and lowest in fish species whose eggs and larvae are abundant during winter. Although the potential reduction in fitness of Antarctic zooplankton resulting from DNA damage is unknown, we suggest that increased solar UV may reduce recruitment and adversely affect trophic transfer of productivity by affecting heterotrophic species as well as primary producers. 54 refs., 4 figs., 2 tabs.

  9. Solar UVB-induced DNA damage and photoenzymatic DNA repair in antarctic zooplankton.

    PubMed

    Malloy, K D; Holman, M A; Mitchell, D; Detrich, H W

    1997-02-18

    The detrimental effects of elevated intensities of mid-UV radiation (UVB), a result of stratospheric ozone depletion during the austral spring, on the primary producers of the Antarctic marine ecosystem have been well documented. Here we report that natural populations of Antarctic zooplankton also sustain significant DNA damage [measured as cyclobutane pyrimidine dimers (CPDs)] during periods of increased UVB flux. This is the first direct evidence that increased solar UVB may result in damage to marine organisms other than primary producers in Antarctica. The extent of DNA damage in pelagic icefish eggs correlated with daily incident UVB irradiance, reflecting the difference between acquisition and repair of CPDs. Patterns of DNA damage in fish larvae did not correlate with daily UVB flux, possibly due to different depth distributions and/or different capacities for DNA repair. Clearance of CPDs by Antarctic fish and krill was mediated primarily by the photoenzymatic repair system. Although repair rates were large for all species evaluated, they were apparently inadequate to prevent the transient accumulation of substantial CPD burdens. The capacity for DNA repair in Antarctic organisms was highest in those species whose early life history stages occupy the water column during periods of ozone depletion (austral spring) and lowest in fish species whose eggs and larvae are abundant during winter. Although the potential reduction in fitness of Antarctic zooplankton resulting from DNA damage is unknown, we suggest that increased solar UV may reduce recruitment and adversely affect trophic transfer of productivity by affecting heterotrophic species as well as primary producers. PMID:9037040

  10. The Antarctic ozone lidar system

    NASA Astrophysics Data System (ADS)

    Stefanutti, L.; Castagnoli, F.; del Guasta, M.; Morandi, M.; Sacco, V. M.; Zuccagnoli, L.; Godin, S.; Megie, G.; Porteneuve, J.

    1992-07-01

    A new complex lidar system, designated POLE, for measuring tropospheric and stratospheric ozone, stratospheric aerosols, and polar stratospheric and tropospheric clouds is described. The lidar system is comprised of a Rayleigh lidar, an upper stratospheric ozone lidar, a low-altitude or tropospheric ozone lidar, and an aerosol backscattering depolarization lidar. The paper describes the characteristics of these lidars and the measurements obtained by each of them, together with the features of various subsystems of POLE, and presents results of measurements performed during the 1991 antarctic winter.

  11. Learning more about Antarctic geoscience

    NASA Astrophysics Data System (ADS)

    Johnstone, Glenn

    Windy, cold, remote, hostile, barren, extreme. These are just some of the words that come to mind when describing Antarctica.Antarctica is the highest, coldest, and windiest continent on Earth. Less than 3% of Antarctica is free of ice, and the continent contains some of the most spectacular mountain ranges in the world. The most extensive are in the Antarctic Peninsula, 1700 km in length, and the Transantarctic Mountains, which are more than 3000 km long. The highest mountain, Vinson Massif in the Ellsworth Mountains, peaks at 4897 m.

  12. Models for the volume of earliest Oligocene Antarctic ice on reconstructed Antarctic topography

    NASA Astrophysics Data System (ADS)

    Wilson, D. S.; Pollard, D.; DeConto, R.; Jamieson, S.; Luyendyk, B. P.

    2011-12-01

    The Eocene-Oligocene (E-O) climate transition is widely recognized as including both growth of a substantial Antarctic ice sheet and cooling of the deep ocean, recorded most quantitatively by a sharp increase in benthic marine oxygen isotopes. As the oceanographic record of oxygen isotopes depends on both ice volume and temperature, substantial recent effort has been directed to interpreting proxy records of temperature and sea level in order to determine the changes in ice volume and temperature. The general consensus is that the ice-volume increase at E-O is comparable to or most plausibly larger than the volume of present Antarctic ice (25.4 M km3, BEDMAP). Early models of E-O ice growth have not produced this volume. One of the factors limiting the value of the early ice-growth models is the use of present Antarctic bedrock topography as a boundary condition. The use of present topography ignores the potentially significant long-term processes of landscape evolution including glacial erosion, thermal subsidence and tectonics which are likely to have changed the relationship between topography and ice dynamics in Antarctica. We present models contrasting the ice volume supported by the present topography (BEDMAP, restored for removing the load of modern ice) with the ice volume supported by minimum and maximum estimates of reconstructed E-O topography [Wilson, D.S., et al., Antarctic topography at the Eocene-Oligocene boundary, Palaeogeogr. Palaeoclimatol. Palaeoecol., 2011, in press, doi:10.1016/j.palaeo.2011.05.028], which restore substantial areas of West Antarctica above sea level. These models are based on running a 3-D ice-sheet model to equilibrium, in a climate obtained from a look-up matrix of GENESIS GCM snapshots with atmospheric CO2 set to 2x preindustrial level, and an average Earth orbit. Using a uniformly high-friction basal boundary condition for ice sliding, our preliminary predictions for total ice volume are 23.6 Mkm3 for BEDMAP, 35.6 Mkm3 for

  13. Oxygen Isotope Mass-Balance Constraints on Pliocene Sea Level and East Antarctic Ice Sheet Stability

    NASA Astrophysics Data System (ADS)

    Winnick, M. J.; Caves, J. K.

    2015-12-01

    The mid-Pliocene Warm Period (MPWP, 3.3-2.9 Ma), with reconstructed atmospheric pCO2 of 350-450 ppm, represents a potential analogue for climate change in the near future. Current highly cited estimates place MPWP maximum global mean sea level (GMSL) at 21 ± 10 m above modern, requiring total loss of the Greenland (GIS) and marine West Antarctic Ice Sheets (WAIS) and a substantial loss of the East Antarctic Ice Sheet (EAIS), with only a concurrent 2-3 ºC rise in global temperature. Many estimates of Pliocene GMSL are based on the partitioning of oxygen isotope records from benthic foraminifera (δ18Ob) into changes in deep-sea temperatures and terrestrial ice sheets. These isotopic budgets are underpinned by the assumption that the δ18O of Antarctic ice (δ18Oi) was the same in the Pliocene as it is today, and while the sensitivity of δ18Ob to changing meltwater δ18O has been previously considered, these analyses neglect conservation of 18O/16O in the ocean-ice system. Using well-calibrated δ18O-temperature relationships for Antarctic precipitation along with estimates of Pliocene Antarctic surface temperatures, we argue that the δ18Oi of the Pliocene Antarctic ice sheet was at minimum 1‰-4‰ higher than present. Assuming conservation of 18O/16O in the ocean-ice system, this requires lower Pliocene seawater δ18O (δ18Osw) without a corresponding change in ice sheet mass. This effect alone accounts for 5%-20% of the δ18Ob difference between the MPWP interglacials and the modern. With this amended isotope budget, we suggest that Pliocene GMSL was likely 9-13.5 m and very likely 5-17 m above modern, which suggests the EAIS is less sensitive to radiative forcing than previously inferred from the geologic record.

  14. Iron biogeochemistry in Antarctic pack ice during SIPEX-2

    NASA Astrophysics Data System (ADS)

    Lannuzel, Delphine; Chever, Fanny; van der Merwe, Pier C.; Janssens, Julie; Roukaerts, Arnout; Cavagna, Anne-Julie; Townsend, Ashley T.; Bowie, Andrew R.; Meiners, Klaus M.

    2016-09-01

    Our study quantified the spatial and temporal distribution of Fe and ancillary biogeochemical parameters at six stations visited during an interdisciplinary Australian Antarctic marine science voyage (SIPEX-2) within the East Antarctic first-year pack ice zone during September-October 2012. Unlike previous studies in the area, the sea ice Chlorophyll a, Particulate Organic Carbon and Nitrogen (POC and PON) maxima did not occur at the ice/water interface because of the snow loading and dynamic processes under which the sea ice formed. Iron in sea ice ranged from 0.9 to 17.4 nM for the dissolved (<0.2 μm) fraction and 0.04 to 990 nM for the particulate (>0.2 μm) fraction. Our results highlight that the concentration of particulate Fe in sea ice was highest when approaching the continent. The high POC concentration and high particulate iron to aluminium ratio in sea ice samples demonstrate that 71% of the particulate Fe was biogenic in composition. Our estimated Fe flux from melting pack ice to East Antarctic surface waters over a 30 day melting period was 0.2 μmol/m2/d of DFe, 2.7 μmol/m2/d of biogenic PFe and 1.3 μmol/m2/d of lithogenic PFe. These estimates suggest that the fertilization potential of the particulate fraction of Fe may have been previously underestimated due to the assumption that it is primarily lithogenic in composition. Our new measurements and calculated fluxes indicate that a large fraction of the total Fe pool within sea ice may be bioavailable and therefore, effective in promoting primary productivity in the marginal ice zone.

  15. Sediment fluxes of an Antarctic palaeo-ice stream system

    NASA Astrophysics Data System (ADS)

    Hogan, Kelly; Larter, Robert; Smith, James; Hillenbrand, Claus-Dieter

    2016-04-01

    New marine-geophysical data (multibeam bathymetry, high-resolution acoustic profiles) acquired in 2014 have been integrated with heritage multichannel seismic-reflection and deep-tow boomer profiles from Anvers-Hugo Trough, western Antarctic Peninsula. From these datasets we have identified seismic facies relating to ice-stream advance and flow, ice-stream retreat, and post-glacial sedimentation processes. We identify multiple subglacial seismic units forming MSGL and other streamlined landforms at a variety of size scales. This may be indicative of multiple generations of ice-flow through the confluent ice-stream system. We also calculate the sediment volumes of a series of grounding-zone wedges (GZWs) located on the outer and mid-shelf that were produced during several stillstands in the trough as the grounded ice margin retreated through the system during deglaciation around c. 15-13 ka (from published core chronologies). Based on these volumes we consider the likely rates of subglacial sediment delivery by the Anvers Trough palaeo-ice stream and compare these to inferred flux rates from other palaeo- and modern Antarctic ice streams. In addition, we map the post-glacial glacimarine sediment package in the trough. Large mapped sediment thicknesses of this unit across the trough are consistent with high post-glacial sediment accumulation rates reported from cores acquired in the Anvers-Hugo Trough system. Previous authors have attributed this to exceptionally high primary productivity in a calving-bay re-entrant settings produced as ice retreated across the shelf on this part of the Antarctic margin.

  16. Elevated nutrients change bacterial community composition and connectivity: high throughput sequencing of young marine biofilms.

    PubMed

    Lawes, Jasmin C; Neilan, Brett A; Brown, Mark V; Clark, Graeme F; Johnston, Emma L

    2016-01-01

    Biofilms are integral to many marine processes but their formation and function may be affected by anthropogenic inputs that alter environmental conditions, including fertilisers that increase nutrients. Density composition and connectivity of biofilms developed in situ (under ambient and elevated nutrients) were compared using 454-pyrosequencing of the 16S gene. Elevated nutrients shifted community composition from bacteria involved in higher processes (eg Pseudoalteromonas spp. invertebrate recruitment) towards more nutrient-tolerant bacterial species (eg Terendinibacter sp.). This may enable the persistence of biofilm communities by increasing resistance to nutrient inputs. A core biofilm microbiome was identified (predominantly Alteromonadales and Oceanospirillales) and revealed shifts in abundances of core microbes that could indicate enrichment by fertilisers. Fertiliser decreased density and connectivity within biofilms indicating that associations were disrupted perhaps via changes to energetic allocations within the core microbiome. Density composition and connectivity changes suggest nutrients can affect the stability and function of these important marine communities. PMID:26751559

  17. Role of bacteria in marine barite precipitation: a case study using Mediterranean seawater.

    PubMed

    Torres-Crespo, N; Martínez-Ruiz, F; González-Muñoz, M T; Bedmar, E J; De Lange, G J; Jroundi, F

    2015-04-15

    Marine bacteria isolated from natural seawater were used to test their capacity to promote barite precipitation under laboratory conditions. Seawater samples were collected in the western and eastern Mediterranean at 250 m and 200 m depths, respectively, since marine barite formation is thought to occur in the upper water column. The results indicate that Pseudoalteromonas sp., Idiomarina sp. and Alteromonas sp. actually precipitate barite under experimental conditions. Barite precipitates show typical characteristics of microbial precipitation in terms of size, morphology and composition. Initially, a P-rich phase precipitates and subsequently evolves to barite crystals with low P contents. Under laboratory conditions barite formation correlates with extracellular polymeric substances (EPS) production. Barite precipitates are particularly abundant in cultures where EPS production is similarly abundant. Our results further support the idea that bacteria may provide appropriate microenvironments for mineral precipitation in the water column. Therefore, bacterial production in the past ocean should be considered when using Ba proxies for paleoproductivity reconstructions.

  18. Role of bacteria in marine barite precipitation: a case study using Mediterranean seawater.

    PubMed

    Torres-Crespo, N; Martínez-Ruiz, F; González-Muñoz, M T; Bedmar, E J; De Lange, G J; Jroundi, F

    2015-04-15

    Marine bacteria isolated from natural seawater were used to test their capacity to promote barite precipitation under laboratory conditions. Seawater samples were collected in the western and eastern Mediterranean at 250 m and 200 m depths, respectively, since marine barite formation is thought to occur in the upper water column. The results indicate that Pseudoalteromonas sp., Idiomarina sp. and Alteromonas sp. actually precipitate barite under experimental conditions. Barite precipitates show typical characteristics of microbial precipitation in terms of size, morphology and composition. Initially, a P-rich phase precipitates and subsequently evolves to barite crystals with low P contents. Under laboratory conditions barite formation correlates with extracellular polymeric substances (EPS) production. Barite precipitates are particularly abundant in cultures where EPS production is similarly abundant. Our results further support the idea that bacteria may provide appropriate microenvironments for mineral precipitation in the water column. Therefore, bacterial production in the past ocean should be considered when using Ba proxies for paleoproductivity reconstructions. PMID:25647371

  19. Identification and characterization of single-stranded DNA-binding protein from the facultative psychrophilic bacteria Pseudoalteromonas haloplanktis.

    PubMed

    Olszewski, Marcin; Nowak, Marta; Cyranka-Czaja, Anna; Kur, Józef

    2014-01-01

    Single-stranded DNA-binding protein (SSB) plays an important role in DNA metabolism such as DNA replication, repair, and recombination, and is essential for cell survival. This study reports on the ssb-like gene cloning, gene expression and characterization of a single-stranded DNA-binding protein of Pseudoalteromonas haloplanktis (PhaSSB) and is the first report of such a protein from psychrophilic microorganism. PhaSSB possesses a high sequence similarity to Escherichia coli SSB (48% identity and 57% similarity) and has the longest amino acid sequence (244 amino acid residues) of all the known bacterial SSBs with one OB-fold per monomer. An analysis of purified PhaSSB by means of chemical cross-linking experiments, sedimentation analysis and size exclusion chromatography revealed a stable tetramer in solution. Using EMSA, we characterized the stoichiometry of PhaSSB complexed with a series of ssDNA homopolymers, and the size of the binding site was determined as being approximately 35 nucleotides long. In fluorescence titrations, the occluded site size of PhaSSB on poly(dT) is 34 nucleotides per tetramer under low-salt conditions (2mM NaCl), but increases to 54-64 nucleotides at higher-salt conditions (100-300mM NaCl). This suggests that PhaSSB undergoes a transition between ssDNA binding modes, which is observed for EcoSSB. The binding properties of PhaSSB investigated using SPR technology revealed that the affinity of PhaSSB to ssDNA is typical of SSB proteins. The only difference in the binding mode of PhaSSB to ssDNA is a faster association phase, when compared to EcoSSB, though compensated by faster dissociation rate. When analyzed by differential scanning calorimetry (DSC), the melting temperature (Tm) was determined as 63 °C, which is only a few degrees lower than for EcoSSB.

  20. Hydrocarbon degradation by antarctic bacteria

    SciTech Connect

    Cavanagh, J.A.E.; Nichols, P.D.; McMeekin, T.A.; Franzmann, P.D.

    1996-12-31

    Bacterial cultures obtained from sediment samples collected during a trial oil spill experiment conducted at Airport beach, Eastern Antarctica were selectively enriched for n-alkane-degrading and phenanthrenedegrading bacteria. Samples were collected from a control site and sites treated with different hydrocarbon mixtures - Special Antarctic blend (SAB), BP-Visco and orange roughy oils. One set of replicate sites was also treated with water from Organic Lake which had previously been shown to contain hydrocarbon-degrading bacteria. No viable bacteria were obtained from samples collected from sites treated with orange roughy oil. Extensive degradation of n-alkanes by enrichment cultures obtained from sites treated with SAB and BP-Visco occurred at both 25{degrees}C and 10{degrees}C. Extensive degradation of phenanthrene also occurred in enrichment cultures from these sites grown at 25{degrees}C. Concurrent increases of polar lipid in these cultures were also observed. The presence of 1,4-naphthaquinone and 1-naphthol during the growth of the cultures on phenanthrene is unusual and warrants further investigation of the mechanism of phenanthrene-degradation by these Antarctic bacteria.

  1. Ozone depletion: ultraviolet radiation and phytoplankton biology in antarctic waters.

    PubMed

    Smith, R C; Prézelin, B B; Baker, K S; Bidigare, R R; Boucher, N P; Coley, T; Karentz, D; MacIntyre, S; Matlick, H A; Menzies, D

    1992-02-21

    The springtime stratospheric ozone (O3) layer over the Antarctic is thinning by as much as 50 percent, resulting in increased midultraviolet (UVB) radiation reaching the surface of the Southern Ocean. There is concern that phytoplankton communities confined to near-surface waters of the marginal ice zone will be harmed by increased UVB irradiance penetrating the ocean surface, thereby altering the dynamics of Antarctic marine ecosystems. Results from a 6-week cruise (Icecolors) in the marginal ice zone of the Bellingshausen Sea in austral spring of 1990 indicated that as the O3 layer thinned: (i) sea surface- and depth-dependent ratios of UVB irradiance (280 to 320 nanometers) to total irradiance (280 to 700 nanometers) increased and (ii) UVB inhibition of photosynthesis increased. These and other Icecolors findings suggest that O3-dependent shifts of in-water spectral irradiances alter the balance of spectrally dependent phytoplankton processes, including photoinhibition, photoreactivation, photoprotection, and photosynthesis. A minimum 6 to 12 percent reduction in primary production associated with O3 depletion was estimated for the duration of the cruise.

  2. A Palaeohydrological Shift during Neogene East Antarctic Ice Sheet Retreat

    NASA Astrophysics Data System (ADS)

    Rees-Owen, R. L.; Newton, R.; Ivanovic, R. F.; Francis, J.; Tindall, J. C.; Riding, J. B.

    2015-12-01

    The East Antarctic Ice Sheet is an important driver of global climate, playing a particular role in governing albedo and atmospheric circulation (eg. Singh et al., 2013). Recent evidence from marine sediment and terrestrial glaciovolcanic sequences suggests that the EAIS underwent periodic retreat and collapse in response to warmer climates during the late Neogene (14 to 3 million years ago). Mummified prostrate trees recovered from palaeosols at Oliver Bluffs in the Beardmore Glacier region, Transantarctic Mountains (85° S), represent a rare insight into the terrestrial palaeoclimate during one of these periods of retreat. Prostrate trees are an understudied but useful tool for interrogating endmember (e.g. periglacial) environments at high altitudes and latitudes. We present exciting new palaeoclimate data from the sequence at Oliver Bluffs. δ18O analysis of tree ring cellulose suggests that Antarctic summer palaeoprecipitation was enriched relative to today (-25 to -5‰ for ancient, -35 to -20‰ for modern); consistent with our isotope-enabled general circulation model simulations. The MBT/CBT palaeothermometer gives a summer temperature of 3-6ºC, consistent with other palaeobotanical climate indices. These geological and model data have wide-ranging implications for our understanding of the hydrological cycle during this time period. We present data suggesting that changes in moisture recycling and source region indicate a markedly different hydrological cycle.

  3. Snow Surface Microbiome on the High Antarctic Plateau (DOME C)

    PubMed Central

    Michaud, Luigi; Lo Giudice, Angelina; Mysara, Mohamed; Monsieurs, Pieter; Raffa, Carmela; Leys, Natalie; Amalfitano, Stefano; Van Houdt, Rob

    2014-01-01

    The cryosphere is an integral part of the global climate system and one of the major habitable ecosystems of Earth's biosphere. These permanently frozen environments harbor diverse, viable and metabolically active microbial populations that represent almost all the major phylogenetic groups. In this study, we investigated the microbial diversity in the surface snow surrounding the Concordia Research Station on the High Antarctic Plateau through a polyphasic approach, including direct prokaryotic quantification by flow cytometry and catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH), and phylogenetic identification by 16S RNA gene clone library sequencing and 454 16S amplicon pyrosequencing. Although the microbial abundance was low (<103 cells/ml of snowmelt), concordant results were obtained with the different techniques. The microbial community was mainly composed of members of the Alpha-proteobacteria class (e.g. Kiloniellaceae and Rhodobacteraceae), which is one of the most well-represented bacterial groups in marine habitats, Bacteroidetes (e.g. Cryomorphaceae and Flavobacteriaceae) and Cyanobacteria. Based on our results, polar microorganisms could not only be considered as deposited airborne particles, but as an active component of the snowpack ecology of the High Antarctic Plateau. PMID:25101779

  4. Is the species flock concept operational? The Antarctic shelf case.

    PubMed

    Lecointre, Guillaume; Améziane, Nadia; Boisselier, Marie-Catherine; Bonillo, Céline; Busson, Frédéric; Causse, Romain; Chenuil, Anne; Couloux, Arnaud; Coutanceau, Jean-Pierre; Cruaud, Corinne; d'Acoz, Cédric d'Udekem; De Ridder, Chantal; Denys, Gael; Dettaï, Agnès; Duhamel, Guy; Eléaume, Marc; Féral, Jean-Pierre; Gallut, Cyril; Havermans, Charlotte; Held, Christoph; Hemery, Lenaïg; Lautrédou, Anne-Claire; Martin, Patrick; Ozouf-Costaz, Catherine; Pierrat, Benjamin; Pruvost, Patrice; Puillandre, Nicolas; Samadi, Sarah; Saucède, Thomas; Schubart, Christoph; David, Bruno

    2013-01-01

    There has been a significant body of literature on species flock definition but not so much about practical means to appraise them. We here apply the five criteria of Eastman and McCune for detecting species flocks in four taxonomic components of the benthic fauna of the Antarctic shelf: teleost fishes, crinoids (feather stars), echinoids (sea urchins) and crustacean arthropods. Practical limitations led us to prioritize the three historical criteria (endemicity, monophyly, species richness) over the two ecological ones (ecological diversity and habitat dominance). We propose a new protocol which includes an iterative fine-tuning of the monophyly and endemicity criteria in order to discover unsuspected flocks. As a result nine « full » species flocks (fulfilling the five criteria) are briefly described. Eight other flocks fit the three historical criteria but need to be further investigated from the ecological point of view (here called "core flocks"). The approach also shows that some candidate taxonomic components are no species flocks at all. The present study contradicts the paradigm that marine species flocks are rare. The hypothesis according to which the Antarctic shelf acts as a species flocks generator is supported, and the approach indicates paths for further ecological studies and may serve as a starting point to investigate the processes leading to flock-like patterning of biodiversity.

  5. Antarctic mixotrophic protist abundances by microscopy and molecular methods.

    PubMed

    Gast, Rebecca J; McKie-Krisberg, Zaid M; Fay, Scott A; Rose, Julie M; Sanders, Robert W

    2014-08-01

    Protists are traditionally described as either phototrophic or heterotrophic, but studies have indicated that mixotrophic species, organisms that combine both strategies, can have significant impacts on prey populations in marine microbial food webs. While estimates of active mixotroph abundances in environmental samples are determined microscopically by fluorescent particle ingestion, species identification is difficult. We developed SYBR-based qPCR strategies for three Antarctic algal species that we identified as mixotrophic. This method and traditional ingestion experiments were applied to determine the total mixotroph abundance in Antarctic water samples, to ascertain the abundance of known mixotrophic species, and to identify environmental variables that impact the distribution and abundance of these species. Despite differences in sampling locations and years, mixotroph distribution was strongly influenced by season. Environmental variables that best explained variation in the individual mixotroph species abundances included temperature, oxygen, date, fluorescence, conductivity, and latitude. Phosphate was identified as an additional explanatory variable when nutrients were included in the analysis. Utilizing culture-based grazing rates and qPCR abundances, the estimated summed impact on bacterial populations by the three mixotrophs was usually < 2% of the overall mixotrophic grazing, but in one sample, Pyramimonas was estimated to contribute up to 80% of mixotrophic grazing.

  6. Ecological niche modeling of sympatric krill predators around Marguerite Bay, Western Antarctic Peninsula

    NASA Astrophysics Data System (ADS)

    Friedlaender, Ari S.; Johnston, David W.; Fraser, William R.; Burns, Jennifer; Halpin, Patrick N.; Costa, Daniel P.

    2011-07-01

    Adélie penguins ( Pygoscelis adeliae), carabeater seals ( Lobodon carcinophagus), humpback ( Megaptera novaeangliae), and minke whales ( Balaenoptera bonaernsis) are found in the waters surrounding the Western Antarctic Peninsula. Each species relies primarily on Antarctic krill ( Euphausia superba) and has physiological constraints and foraging behaviors that dictate their ecological niches. Understanding the degree of ecological overlap between sympatric krill predators is critical to understanding and predicting the impacts on climate-driven changes to the Antarctic marine ecosystem. To explore ecological relationships amongst sympatric krill predators, we developed ecological niche models using a maximum entropy modeling approach (Maxent) that allows the integration of data collected by a variety of means (e.g. satellite-based locations and visual observations). We created spatially explicit probability distributions for the four krill predators in fall 2001 and 2002 in conjunction with a suite of environmental variables. We find areas within Marguerite Bay with high krill predator occurrence rates or biological hot spots. We find the modeled ecological niches for Adélie penguins and crabeater seals may be affected by their physiological needs to haul-out on substrate. Thus, their distributions may be less dictated by proximity to prey and more so by physical features that over time provide adequate access to prey. Humpback and minke whales, being fully marine and having greater energetic demands, occupy ecological niches more directly proximate to prey. We also find evidence to suggest that the amount of overlap between modeled niches is relatively low, even for species with similar energetic requirements. In a rapidly changing and variable environment, our modeling work shows little indication that krill predators maintain similar ecological niches across years around Marguerite Bay. Given the amount of variability in the marine environment around the

  7. Diatom-specific highly branched isoprenoids as biomarkers in Antarctic consumers.

    PubMed

    Goutte, Aurélie; Cherel, Yves; Houssais, Marie-Noëlle; Klein, Vincent; Ozouf-Costaz, Catherine; Raccurt, Mireille; Robineau, Camille; Massé, Guillaume

    2013-01-01

    The structure, functioning and dynamics of polar marine ecosystems are strongly influenced by the extent of sea ice. Ice algae and pelagic phytoplankton represent the primary sources of nutrition for higher trophic-level organisms in seasonally ice-covered areas, but their relative contributions to polar marine consumers remain largely unexplored. Here, we investigated the potential of diatom-specific lipid markers and highly branched isoprenoids (HBIs) for estimating the importance of these two carbon pools in an Antarctic pelagic ecosystem. Using GC-MS analysis, we studied HBI biomarkers in key marine species over three years in Adélie Land, Antarctica: euphausiids (ice krill Euphausia crystallorophias and Antarctic krill E. superba), fish (bald notothens Pagothenia borchgrevinki and Antarctic silverfish Pleuragramma antarcticum) and seabirds (Adélie penguins Pygoscelis adeliae, snow petrels Pagodroma nivea and cape petrels Daption capense). This study provides the first evidence of the incorporation of HBI lipids in Antarctic pelagic consumers. Specifically, a di-unsaturated HBI (diene) of sea ice origin was more abundant in ice-associated species than in pelagic species, whereas a tri-unsaturated HBI (triene) of phytoplanktonic origin was more abundant in pelagic species than in ice-associated species. Moreover, the relative abundances of diene and triene in seabird tissues and eggs were higher during a year of good sea ice conditions than in a year of poor ice conditions. In turn, the higher contribution of ice algal derived organic matter to the diet of seabirds was related to earlier breeding and higher breeding success. HBI biomarkers are a promising tool for estimating the contribution of organic matter derived from ice algae in pelagic consumers from Antarctica.

  8. Diatom-Specific Highly Branched Isoprenoids as Biomarkers in Antarctic Consumers

    PubMed Central

    Goutte, Aurélie; Cherel, Yves; Houssais, Marie-Noëlle; Klein, Vincent; Ozouf-Costaz, Catherine; Raccurt, Mireille; Robineau, Camille; Massé, Guillaume

    2013-01-01

    The structure, functioning and dynamics of polar marine ecosystems are strongly influenced by the extent of sea ice. Ice algae and pelagic phytoplankton represent the primary sources of nutrition for higher trophic-level organisms in seasonally ice-covered areas, but their relative contributions to polar marine consumers remain largely unexplored. Here, we investigated the potential of diatom-specific lipid markers and highly branched isoprenoids (HBIs) for estimating the importance of these two carbon pools in an Antarctic pelagic ecosystem. Using GC-MS analysis, we studied HBI biomarkers in key marine species over three years in Adélie Land, Antarctica: euphausiids (ice krill Euphausia crystallorophias and Antarctic krill E. superba), fish (bald notothens Pagothenia borchgrevinki and Antarctic silverfish Pleuragramma antarcticum) and seabirds (Adélie penguins Pygoscelis adeliae, snow petrels Pagodroma nivea and cape petrels Daption capense). This study provides the first evidence of the incorporation of HBI lipids in Antarctic pelagic consumers. Specifically, a di-unsaturated HBI (diene) of sea ice origin was more abundant in ice-associated species than in pelagic species, whereas a tri-unsaturated HBI (triene) of phytoplanktonic origin was more abundant in pelagic species than in ice-associated species. Moreover, the relative abundances of diene and triene in seabird tissues and eggs were higher during a year of good sea ice conditions than in a year of poor ice conditions. In turn, the higher contribution of ice algal derived organic matter to the diet of seabirds was related to earlier breeding and higher breeding success. HBI biomarkers are a promising tool for estimating the contribution of organic matter derived from ice algae in pelagic consumers from Antarctica. PMID:23418580

  9. Late Oligocene to Late Miocene Antarctic Climate Reconstructions Using Molecular and Isotopic Biomarker Proxies

    NASA Astrophysics Data System (ADS)

    Duncan, B.; Mckay, R. M.; Bendle, J. A.; Naish, T.; Levy, R. H.; Ventura, G. T.; Moossen, H. M.; Krishnan, S.; Pagani, M.

    2015-12-01

    Major climate and environmental changes occurred during late Oligocene to the late Miocene when atmospheric CO2 ranged between 500 and 300ppm, indicating threshold response of Antarctic ice sheets and climate to relatively modest CO2 variations. This implies that the southern high latitudes are highly sensitive to feedbacks associated with changes in global ice sheet and sea-ice extent, as well as terrestrial and marine ecosystems. This study focuses on two key intervals during the evolution of the Antarctic Ice Sheet: (1) The Late Oligocene and the Oligocene/Miocene boundary, when the East Antarctic Ice Sheet expanded close to present day volume following an extended period of inferred warmth. (2) The Mid-Miocene Climate Optimum (MMCO ~17-15 Ma), a period of global warmth and moderately elevated CO2 (350->500 ppm) which was subsequently followed by rapid cooling at 14-13.5 Ma. Reconstructions of climate and ice sheet variability, and thus an understanding of the various feedbacks that occurred during these intervals, are hampered by a lack of temperature and hydroclimate proxy data from the southern high latitudes. We present proxy climate reconstructions using terrestrial and marine organic biomarkers that provide new insights into Antarctica's climate evolution, using Antarctic drill cores and outcrop samples from a range of depositional settings. Bacterial ether-lipids have been analysed to determine terrestrial mean annual temperatures and soil pH (via the methylation and cyclisation indexes of branched tetraethers - MBT and CBT, respectively). Tetraether-lipids of crenarchaeota found in marine sediments sampled from continental shelves around Antarctica have been used to derive sea surface temperatures using the TEX86 index. Compound specific stable isotopes on n-alkanes sourced from terrestrial plants have been analysed to investigate changes in the hydrological and carbon cycles.

  10. Underwater Optics in Sub-Antarctic and Antarctic Coastal Ecosystems.

    PubMed

    Huovinen, Pirjo; Ramírez, Jaime; Gómez, Iván

    2016-01-01

    Understanding underwater optics in natural waters is essential in evaluating aquatic primary production and risk of UV exposure in aquatic habitats. Changing environmental conditions related with global climate change, which imply potential contrasting changes in underwater light climate further emphasize the need to gain insights into patterns related with underwater optics for more accurate future predictions. The present study evaluated penetration of solar radiation in six sub-Antarctic estuaries and fjords in Chilean North Patagonian region (39-44°S) and in an Antarctic bay (62°S). Based on vertical diffuse attenuation coefficients (Kd), derived from measurements with a submersible multichannel radiometer, average summer UV penetration depth (z1%) in these water bodies ranged 2-11 m for UV-B (313 nm), 4-27 m for UV-A (395 nm), and 7-30 m for PAR (euphotic zone). UV attenuation was strongest in the shallow Quempillén estuary, while Fildes Bay (Antarctica) exhibited the highest transparency. Optically non-homogeneous water layers and seasonal variation in transparency (lower in winter) characterized Comau Fjord and Puyuhuapi Channel. In general, multivariate analysis based on Kd values of UV and PAR wavelengths discriminated strongly Quempillén estuary and Puyuhuapi Channel from other study sites. Spatial (horizontal) variation within the estuary of Valdivia river reflected stronger attenuation in zones receiving river impact, while within Fildes Bay a lower spatial variation in water transparency could in general be related to closeness of glaciers, likely due to increased turbidity through ice-driven processes. Higher transparency and deeper UV-B penetration in proportion to UV-A/visible wavelengths observed in Fildes Bay suggests a higher risk for Antarctic ecosystems reflected by e.g. altered UV-B damage vs. photorepair under UV-A/PAR. Considering that damage repair processes often slow down under cool temperatures, adverse UV impact could be further

  11. Underwater Optics in Sub-Antarctic and Antarctic Coastal Ecosystems

    PubMed Central

    Huovinen, Pirjo; Ramírez, Jaime; Gómez, Iván

    2016-01-01

    Understanding underwater optics in natural waters is essential in evaluating aquatic primary production and risk of UV exposure in aquatic habitats. Changing environmental conditions related with global climate change, which imply potential contrasting changes in underwater light climate further emphasize the need to gain insights into patterns related with underwater optics for more accurate future predictions. The present study evaluated penetration of solar radiation in six sub-Antarctic estuaries and fjords in Chilean North Patagonian region (39–44°S) and in an Antarctic bay (62°S). Based on vertical diffuse attenuation coefficients (Kd), derived from measurements with a submersible multichannel radiometer, average summer UV penetration depth (z1%) in these water bodies ranged 2–11 m for UV-B (313 nm), 4–27 m for UV-A (395 nm), and 7–30 m for PAR (euphotic zone). UV attenuation was strongest in the shallow Quempillén estuary, while Fildes Bay (Antarctica) exhibited the highest transparency. Optically non-homogeneous water layers and seasonal variation in transparency (lower in winter) characterized Comau Fjord and Puyuhuapi Channel. In general, multivariate analysis based on Kd values of UV and PAR wavelengths discriminated strongly Quempillén estuary and Puyuhuapi Channel from other study sites. Spatial (horizontal) variation within the estuary of Valdivia river reflected stronger attenuation in zones receiving river impact, while within Fildes Bay a lower spatial variation in water transparency could in general be related to closeness of glaciers, likely due to increased turbidity through ice-driven processes. Higher transparency and deeper UV-B penetration in proportion to UV-A/visible wavelengths observed in Fildes Bay suggests a higher risk for Antarctic ecosystems reflected by e.g. altered UV-B damage vs. photorepair under UV-A/PAR. Considering that damage repair processes often slow down under cool temperatures, adverse UV impact could be

  12. Underwater Optics in Sub-Antarctic and Antarctic Coastal Ecosystems.

    PubMed

    Huovinen, Pirjo; Ramírez, Jaime; Gómez, Iván

    2016-01-01

    Understanding underwater optics in natural waters is essential in evaluating aquatic primary production and risk of UV exposure in aquatic habitats. Changing environmental conditions related with global climate change, which imply potential contrasting changes in underwater light climate further emphasize the need to gain insights into patterns related with underwater optics for more accurate future predictions. The present study evaluated penetration of solar radiation in six sub-Antarctic estuaries and fjords in Chilean North Patagonian region (39-44°S) and in an Antarctic bay (62°S). Based on vertical diffuse attenuation coefficients (Kd), derived from measurements with a submersible multichannel radiometer, average summer UV penetration depth (z1%) in these water bodies ranged 2-11 m for UV-B (313 nm), 4-27 m for UV-A (395 nm), and 7-30 m for PAR (euphotic zone). UV attenuation was strongest in the shallow Quempillén estuary, while Fildes Bay (Antarctica) exhibited the highest transparency. Optically non-homogeneous water layers and seasonal variation in transparency (lower in winter) characterized Comau Fjord and Puyuhuapi Channel. In general, multivariate analysis based on Kd values of UV and PAR wavelengths discriminated strongly Quempillén estuary and Puyuhuapi Channel from other study sites. Spatial (horizontal) variation within the estuary of Valdivia river reflected stronger attenuation in zones receiving river impact, while within Fildes Bay a lower spatial variation in water transparency could in general be related to closeness of glaciers, likely due to increased turbidity through ice-driven processes. Higher transparency and deeper UV-B penetration in proportion to UV-A/visible wavelengths observed in Fildes Bay suggests a higher risk for Antarctic ecosystems reflected by e.g. altered UV-B damage vs. photorepair under UV-A/PAR. Considering that damage repair processes often slow down under cool temperatures, adverse UV impact could be further

  13. Molecular structure of endotoxins from Gram-negative marine bacteria: an update.

    PubMed

    Leone, Serena; Silipo, Alba; L Nazarenko, Evgeny; Lanzetta, Rosa; Parrilli, Michelangelo; Molinaro, Antonio

    2007-01-01

    Marine bacteria are microrganisms that have adapted, through millions of years, to survival in environments often characterized by one or more extreme physical or chemical parameters, namely pressure, temperature and salinity. The main interest in the research on marine bacteria is due to their ability to produce several biologically active molecules, such as antibiotics, toxins and antitoxins, antitumor and antimicrobial agents. Nonetheless, lipopolysaccharides (LPSs), or their portions, from Gram-negative marine bacteria, have often shown low virulence, and represent potential candidates in the development of drugs to prevent septic shock. Besides, the molecular architecture of such molecules is related to the possibility of thriving in marine habitats, shielding the cell from the disrupting action of natural stress factors. Over the last few years, the depiction of a variety of structures of lipids A, core oligosaccharides and O-specific polysaccharides from LPSs of marine microrganisms has been given. In particular, here we will examine the most recently encountered structures for bacteria belonging to the genera Shewanella, Pseudoalteromonas and Alteromonas, of the gamma-Proteobacteria phylum, and to the genera Flavobacterium, Cellulophaga, Arenibacter and Chryseobacterium, of the Cytophaga-Flavobacterium-Bacteroides phylum. Particular attention will be paid to the chemical features expressed by these structures (characteristic monosaccharides, non-glycidic appendages, phosphate groups), to the typifying traits of LPSs from marine bacteria and to the possible correlation existing between such features and the adaptation, over years, of bacteria to marine environments. PMID:18463721

  14. [Inhibition of adherence of Corynebacterium diphtheriae to human buccal epithelium by glycoside hydrolases from marine hydrobiontes].

    PubMed

    Zaporozhets, T S; Makarenkova, I D; Bakunina, I Iu; Burtseva, Iu V; Kusaĭkin, M I; Balabanova, L A; Zviagintseva, T N; Besednova, N N; Rasskazov, V A

    2010-01-01

    A possibility of adhesion inhibition of Corynebacterium diphtheriae to human buccal epithelium by glycoside hydrolases of marine hydrobiontes was investigated using alpha-galactosidase from marine bacterium Pseudoalteromonas sp. KMM 701, total enzyme preparation and beta-1,3-glucanase from marine fungi Chaetomium, total enzyme preparation and beta-1,3-glucanase from marine mollusk Littorina kurila, and total enzyme preparation from crystalline style of marine mollusk Spisula sachalinensis were used. The enzymes were added to test-tubes containing buccal epithelial cells and/or the toxigenic bacterial strain C. diphtheriae No 1129, v. gravis. All the investigated enzymes were able to abort C. diphtheriae adherence, to human buccal epithelocytes. Inhibition of adhesion was more pronounced in the case of treatment of epithelocytes with highly purified enzymes of marine hydrobiontes in comparison with total enzyme preparations. The significant inhibition of C. diphtheriae adhesion was observed when the enzymes were added to the epithelocytes with the attached microorganisms. The results obtained show that glycoside hydrolases of marine hydrobiontes degrade any carbohydrates expressed on cell surface of bacterium or human buccal epithelocytes, impair unique lectin-carbohydrate interaction and prevent the adhesion. PMID:20695214

  15. Molecular Structure of Endotoxins from Gram-negative Marine Bacteria: An Update

    PubMed Central

    Leone, Serena; Silipo, Alba; L.Nazarenko, Evgeny; Lanzetta, Rosa; Parrilli, Michelangelo; Molinaro, Antonio

    2007-01-01

    Marine bacteria are microrganisms that have adapted, through millions of years, to survival in environments often characterized by one or more extreme physical or chemical parameters, namely pressure, temperature and salinity. The main interest in the research on marine bacteria is due to their ability to produce several biologically active molecules, such as antibiotics, toxins and antitoxins, antitumor and antimicrobial agents. Nonetheless, lipopolysaccharides (LPSs), or their portions, from Gram-negative marine bacteria, have often shown low virulence, and represent potential candidates in the development of drugs to prevent septic shock. Besides, the molecular architecture of such molecules is related to the possibility of thriving in marine habitats, shielding the cell from the disrupting action of natural stress factors. Over the last few years, the depiction of a variety of structures of lipids A, core oligosaccharides and O-specific polysaccharides from LPSs of marine microrganisms has been given. In particular, here we will examine the most recently encountered structures for bacteria belonging to the genera Shewanella, Pseudoalteromonas and Alteromonas, of the γ-Proteobacteria phylum, and to the genera Flavobacterium, Cellulophaga, Arenibacter and Chryseobacterium, of the Cytophaga-Flavobacterium-Bacteroides phylum. Particular attention will be paid to the chemical features expressed by these structures (characteristic monosaccharides, non-glycidic appendages, phosphate groups), to the typifying traits of LPSs from marine bacteria and to the possible correlation existing between such features and the adaptation, over years, of bacteria to marine environments. PMID:18463721

  16. A direct pre-screen for marine bacteria producing compounds inhibiting quorum sensing reveals diverse planktonic bacteria that are bioactive.

    PubMed

    Linthorne, Jamie S; Chang, Barbara J; Flematti, Gavin R; Ghisalberti, Emilio L; Sutton, David C

    2015-02-01

    A promising new strategy in antibacterial research is inhibition of the bacterial communication system termed quorum sensing. In this study, a novel and rapid pre-screening method was developed to detect the production of chemical inhibitors of this system (quorum-quenching compounds) by bacteria isolated from marine and estuarine waters. This method involves direct screening of mixed populations on an agar plate, facilitating specific isolation of bioactive colonies. The assay showed that between 4 and 46 % of culturable bacteria from various samples were bioactive, and of the 95 selectively isolated bacteria, 93.7 % inhibited Vibrio harveyi bioluminescence without inhibiting growth, indicating potential production of quorum-quenching compounds. Of the active isolates, 21 % showed further activity against quorum-sensing-regulated pigment production by Serratia marcescens. The majority of bioactive isolates were identified by 16S ribosomal DNA (rDNA) amplification and sequencing as belonging to the genera Vibrio and Pseudoalteromonas. Extracts of two strongly bioactive Pseudoalteromonas isolates (K1 and B2) were quantitatively assessed for inhibition of growth and quorum-sensing-regulated processes in V. harveyi, S. marcescens and Chromobacterium violaceum. Extracts of the isolates reduced V. harveyi bioluminescence by as much as 98 % and C. violaceum pigment production by 36 % at concentrations which had no adverse effect on growth. The activity found in the extracts indicated that the isolates may produce quorum-quenching compounds. This study further supports the suggestion that quorum quenching may be a common attribute among culturable planktonic marine and estuarine bacteria.

  17. Australian developments in marine science

    NASA Astrophysics Data System (ADS)

    Coffin, Millard F.

    2012-07-01

    Australia is an island nation with about two thirds of its jurisdiction underwater. On 25 May 2012, Australia instituted the Seas and Submerged Lands (Limits of Continental Shelf) Proclamation 2012, confirming areas of seabed where Australia has exclusive rights to explore and exploit marine resources. This proclamation follows recommendations by the Commission on the Limits of the Continental Shelf, a body established under the United Nations Convention on the Law of the Sea, confirming Australia's entitlement to extended continental shelf, i.e., that beyond 200 nautical miles from the coastline, of some 2.56 million square kilometers, excluding Australian Antarctic Territory [Symonds et al., 2009] (Figure 1a).

  18. Microbial ecology of Antarctic aquatic systems.

    PubMed

    Cavicchioli, Ricardo

    2015-11-01

    The Earth's biosphere is dominated by cold environments, and the cold biosphere is dominated by microorganisms. Microorganisms in cold Southern Ocean waters are recognized for having crucial roles in global biogeochemical cycles, including carbon sequestration, whereas microorganisms in other Antarctic aquatic biomes are not as well understood. In this Review, I consider what has been learned about Antarctic aquatic microbial ecology from 'omic' studies. I assess the factors that shape the biogeography of Antarctic microorganisms, reflect on some of the unusual biogeochemical cycles that they are associated with and discuss the important roles that viruses have in controlling ecosystem function. PMID:26456925

  19. Microbial ecology of Antarctic aquatic systems.

    PubMed

    Cavicchioli, Ricardo

    2015-11-01

    The Earth's biosphere is dominated by cold environments, and the cold biosphere is dominated by microorganisms. Microorganisms in cold Southern Ocean waters are recognized for having crucial roles in global biogeochemical cycles, including carbon sequestration, whereas microorganisms in other Antarctic aquatic biomes are not as well understood. In this Review, I consider what has been learned about Antarctic aquatic microbial ecology from 'omic' studies. I assess the factors that shape the biogeography of Antarctic microorganisms, reflect on some of the unusual biogeochemical cycles that they are associated with and discuss the important roles that viruses have in controlling ecosystem function.

  20. SIPEX—exploring the Antarctic sea ice zone

    NASA Astrophysics Data System (ADS)

    Zicus, Sandra; Dobson, Jane; Worby, Anthony

    2008-11-01

    Sea ice in the polar regions plays a key role in both regulating global climate and maintaining marine ecosystems. The international Sea Ice Physics and Ecosystem eXperiment (SIPEX) explored the sea ice zone around Antarctica in September and October 2007, investigating relationships between the physical sea ice environment and the structure of Southern Ocean ecosystems. One of the main goals of SIPEX was to conduct large-scale sea ice and snow thickness surveys for the validation of satellite-based measurements. SIPEX scientists used a variety of techniques including helicopter-based radar and laser altimetry, as well as a remotely operated underwater vehicle, to gather baseline data on Antarctic sea ice thickness and the under-ice environment. These data will be invaluable for monitoring possible future changes in the sea ice around Antarctica.

  1. Seals map bathymetry of the Antarctic continental shelf

    NASA Astrophysics Data System (ADS)

    Padman, Laurie; Costa, Daniel P.; Bolmer, S. Thompson; Goebel, Michael E.; Huckstadt, Luis A.; Jenkins, Adrian; McDonald, Birgitte I.; Shoosmith, Deborah R.

    2010-11-01

    We demonstrate the first use of marine mammal dive-depth data to improve maps of bathymetry in poorly sampled regions of the continental shelf. A group of 57 instrumented elephant seals made on the order of 2 × 105 dives over and near the continental shelf on the western side of the Antarctic Peninsula during five seasons, 2005-2009. Maximum dive depth exceeded 2000 m. For dives made near existing ship tracks with measured water depths H<700 m, ˜30% of dive depths were to the seabed, consistent with expected benthic foraging behavior. By identifying the deepest of multiple dives within small areas as a dive to the seabed, we have developed a map of seal-derived bathymetry. Our map fills in several regions for which trackline data are sparse, significantly improving delineation of troughs crossing the continental shelf of the southern Bellingshausen Sea.

  2. Strong coupling of Asian Monsoon and Antarctic climates on sub-orbital timescales.

    PubMed

    Chen, Shitao; Wang, Yongjin; Cheng, Hai; Edwards, R Lawrence; Wang, Xianfeng; Kong, Xinggong; Liu, Dianbing

    2016-01-01

    There is increasing evidence that millennial-scale climate variability played an active role on orbital-scale climate changes, but the mechanism for this remains unclear. A (230)Th-dated stalagmite δ(18)O record between 88 and 22 thousand years (ka) ago from Yongxing Cave in central China characterizes changes in Asian monsoon (AM) strength. After removing the 65°N insolation signal from our record, the δ(18)O residue is strongly anti-phased with Antarctic temperature variability on sub-orbital timescales during the Marine Isotope Stage (MIS) 3. Furthermore, once the ice volume signal from Antarctic ice core records were removed and extrapolated back to the last two glacial-interglacial cycles, we observe a linear relationship for both short- and long-duration events between Asian and Antarctic climate changes. This provides the robust evidence of a link between northern and southern hemisphere climates that operates through changes in atmospheric circulation. We find that the weakest monsoon closely associated with the warmest Antarctic event always occurred during the Terminations. This finding, along with similar shifts in the opal flux record, suggests that millennial-scale events play a key role in driving the deglaciation through positive feedbacks associated with enhanced upwelling and increasing CO2. PMID:27605015

  3. Strong coupling of Asian Monsoon and Antarctic climates on sub-orbital timescales

    NASA Astrophysics Data System (ADS)

    Chen, Shitao; Wang, Yongjin; Cheng, Hai; Edwards, R. Lawrence; Wang, Xianfeng; Kong, Xinggong; Liu, Dianbing

    2016-09-01

    There is increasing evidence that millennial-scale climate variability played an active role on orbital-scale climate changes, but the mechanism for this remains unclear. A 230Th-dated stalagmite δ18O record between 88 and 22 thousand years (ka) ago from Yongxing Cave in central China characterizes changes in Asian monsoon (AM) strength. After removing the 65°N insolation signal from our record, the δ18O residue is strongly anti-phased with Antarctic temperature variability on sub-orbital timescales during the Marine Isotope Stage (MIS) 3. Furthermore, once the ice volume signal from Antarctic ice core records were removed and extrapolated back to the last two glacial-interglacial cycles, we observe a linear relationship for both short- and long-duration events between Asian and Antarctic climate changes. This provides the robust evidence of a link between northern and southern hemisphere climates that operates through changes in atmospheric circulation. We find that the weakest monsoon closely associated with the warmest Antarctic event always occurred during the Terminations. This finding, along with similar shifts in the opal flux record, suggests that millennial-scale events play a key role in driving the deglaciation through positive feedbacks associated with enhanced upwelling and increasing CO2.

  4. Possible effects of global environmental changes on Antarctic benthos: a synthesis across five major taxa

    PubMed Central

    Ingels, Jeroen; Vanreusel, Ann; Brandt, Angelika; Catarino, Ana I; David, Bruno; De Ridder, Chantal; Dubois, Philippe; Gooday, Andrew J; Martin, Patrick; Pasotti, Francesca; Robert, Henri

    2012-01-01

    Because of the unique conditions that exist around the Antarctic continent, Southern Ocean (SO) ecosystems are very susceptible to the growing impact of global climate change and other anthropogenic influences. Consequently, there is an urgent need to understand how SO marine life will cope with expected future changes in the environment. Studies of Antarctic organisms have shown that individual species and higher taxa display different degrees of sensitivity to environmental shifts, making it difficult to predict overall community or ecosystem responses. This emphasizes the need for an improved understanding of the Antarctic benthic ecosystem response to global climate change using a multitaxon approach with consideration of different levels of biological organization. Here, we provide a synthesis of the ability of five important Antarctic benthic taxa (Foraminifera, Nematoda, Amphipoda, Isopoda, and Echinoidea) to cope with changes in the environment (temperature, pH, ice cover, ice scouring, food quantity, and quality) that are linked to climatic changes. Responses from individual to the taxon-specific community level to these drivers will vary with taxon but will include local species extinctions, invasions of warmer-water species, shifts in diversity, dominance, and trophic group composition, all with likely consequences for ecosystem functioning. Limitations in our current knowledge and understanding of climate change effects on the different levels are discussed. PMID:22423336

  5. Possible effects of global environmental changes on Antarctic benthos: a synthesis across five major taxa.

    PubMed

    Ingels, Jeroen; Vanreusel, Ann; Brandt, Angelika; Catarino, Ana I; David, Bruno; De Ridder, Chantal; Dubois, Philippe; Gooday, Andrew J; Martin, Patrick; Pasotti, Francesca; Robert, Henri

    2012-02-01

    Because of the unique conditions that exist around the Antarctic continent, Southern Ocean (SO) ecosystems are very susceptible to the growing impact of global climate change and other anthropogenic influences. Consequently, there is an urgent need to understand how SO marine life will cope with expected future changes in the environment. Studies of Antarctic organisms have shown that individual species and higher taxa display different degrees of sensitivity to environmental shifts, making it difficult to predict overall community or ecosystem responses. This emphasizes the need for an improved understanding of the Antarctic benthic ecosystem response to global climate change using a multitaxon approach with consideration of different levels of biological organization. Here, we provide a synthesis of the ability of five important Antarctic benthic taxa (Foraminifera, Nematoda, Amphipoda, Isopoda, and Echinoidea) to cope with changes in the environment (temperature, pH, ice cover, ice scouring, food quantity, and quality) that are linked to climatic changes. Responses from individual to the taxon-specific community level to these drivers will vary with taxon but will include local species extinctions, invasions of warmer-water species, shifts in diversity, dominance, and trophic group composition, all with likely consequences for ecosystem functioning. Limitations in our current knowledge and understanding of climate change effects on the different levels are discussed. PMID:22423336

  6. Brucella antibody seroprevalence in Antarctic seals (Arctocephalus gazella, Leptonychotes weddellii and Mirounga leonina).

    PubMed

    Jensen, Silje-Kristin; Nymo, Ingebjørg Helena; Forcada, Jaume; Hall, Ailsa; Godfroid, Jacques

    2013-09-01

    Brucellosis is a worldwide infectious zoonotic disease caused by Gram-negative bacteria of the genus Brucella, and Brucella infections in marine mammals were first reported in 1994. A serosurvey investigating the presence of anti-Brucella antibodies in 3 Antarctic pinniped species was undertaken with a protein A/G indirect enzyme-linked immunosorbent assay (iELISA) and the Rose Bengal test (RBT). Serum samples from 33 Weddell seals Leptonychotes weddelli were analysed, and antibodies were detected in 8 individuals (24.2%) with the iELISA and in 21 (65.6%) with the RBT. We tested 48 southern elephant seal Mirounga leonina sera and detected antibodies in 2 animals (4.7%) with both the iELISA and the RBT. None of the 21 Antarctic fur seals Arctocephalus gazella was found positive. This is the first report of anti-Brucella antibodies in southern elephant seals. The potential impact of Brucella infection in pinnipeds in Antarctica is not known, but Brucella spp. are known to cause abortion in terrestrial species and cetaceans. Our findings suggest that Brucella infection in pinnipeds is present in the Antarctic, but to date B. pinnipedialis has not been isolated from any Antarctic pinniped species, leaving the confirmation of infection pending. PMID:23999701

  7. Strong coupling of Asian Monsoon and Antarctic climates on sub-orbital timescales.

    PubMed

    Chen, Shitao; Wang, Yongjin; Cheng, Hai; Edwards, R Lawrence; Wang, Xianfeng; Kong, Xinggong; Liu, Dianbing

    2016-01-01

    There is increasing evidence that millennial-scale climate variability played an active role on orbital-scale climate changes, but the mechanism for this remains unclear. A (230)Th-dated stalagmite δ(18)O record between 88 and 22 thousand years (ka) ago from Yongxing Cave in central China characterizes changes in Asian monsoon (AM) strength. After removing the 65°N insolation signal from our record, the δ(18)O residue is strongly anti-phased with Antarctic temperature variability on sub-orbital timescales during the Marine Isotope Stage (MIS) 3. Furthermore, once the ice volume signal from Antarctic ice core records were removed and extrapolated back to the last two glacial-interglacial cycles, we observe a linear relationship for both short- and long-duration events between Asian and Antarctic climate changes. This provides the robust evidence of a link between northern and southern hemisphere climates that operates through changes in atmospheric circulation. We find that the weakest monsoon closely associated with the warmest Antarctic event always occurred during the Terminations. This finding, along with similar shifts in the opal flux record, suggests that millennial-scale events play a key role in driving the deglaciation through positive feedbacks associated with enhanced upwelling and increasing CO2.

  8. Strong coupling of Asian Monsoon and Antarctic climates on sub-orbital timescales

    PubMed Central

    Chen, Shitao; Wang, Yongjin; Cheng, Hai; Edwards, R. Lawrence; Wang, Xianfeng; Kong, Xinggong; Liu, Dianbing

    2016-01-01

    There is increasing evidence that millennial-scale climate variability played an active role on orbital-scale climate changes, but the mechanism for this remains unclear. A 230Th-dated stalagmite δ18O record between 88 and 22 thousand years (ka) ago from Yongxing Cave in central China characterizes changes in Asian monsoon (AM) strength. After removing the 65°N insolation signal from our record, the δ18O residue is strongly anti-phased with Antarctic temperature variability on sub-orbital timescales during the Marine Isotope Stage (MIS) 3. Furthermore, once the ice volume signal from Antarctic ice core records were removed and extrapolated back to the last two glacial-interglacial cycles, we observe a linear relationship for both short- and long-duration events between Asian and Antarctic climate changes. This provides the robust evidence of a link between northern and southern hemisphere climates that operates through changes in atmospheric circulation. We find that the weakest monsoon closely associated with the warmest Antarctic event always occurred during the Terminations. This finding, along with similar shifts in the opal flux record, suggests that millennial-scale events play a key role in driving the deglaciation through positive feedbacks associated with enhanced upwelling and increasing CO2. PMID:27605015

  9. Mapping and Assessing Variability in the Antarctic Marginal Ice Zone, the Pack Ice and Coastal Polynyas

    NASA Astrophysics Data System (ADS)

    Stroeve, Julienne; Jenouvrier, Stephanie

    2016-04-01

    Sea ice variability within the marginal ice zone (MIZ) and polynyas plays an important role for phytoplankton productivity and krill abundance. Therefore mapping their spatial extent, seasonal and interannual variability is essential for understanding how current and future changes in these biological active regions may impact the Antarctic marine ecosystem. Knowledge of the distribution of different ice types to the total Antarctic sea ice cover may also help to shed light on the factors contributing towards recent expansion of the Antarctic ice cover in some regions and contraction in others. The long-term passive microwave satellite data record provides the longest and most consistent data record for assessing different ice types. However, estimates of the amount of MIZ, consolidated pack ice and polynyas depends strongly on what sea ice algorithm is used. This study uses two popular passive microwave sea ice algorithms, the NASA Team and Bootstrap to evaluate the distribution and variability in the MIZ, the consolidated pack ice and coastal polynyas. Results reveal the NASA Team algorithm has on average twice the MIZ and half the consolidated pack ice area as the Bootstrap algorithm. Polynya area is also larger in the NASA Team algorithm, and the timing of maximum polynya area may differ by as much as 5 months between algorithms. These differences lead to different relationships between sea ice characteristics and biological processes, as illustrated here with the breeding success of an Antarctic seabird.

  10. Possible effects of global environmental changes on Antarctic benthos: a synthesis across five major taxa.

    PubMed

    Ingels, Jeroen; Vanreusel, Ann; Brandt, Angelika; Catarino, Ana I; David, Bruno; De Ridder, Chantal; Dubois, Philippe; Gooday, Andrew J; Martin, Patrick; Pasotti, Francesca; Robert, Henri

    2012-02-01

    Because of the unique conditions that exist around the Antarctic continent, Southern Ocean (SO) ecosystems are very susceptible to the growing impact of global climate change and other anthropogenic influences. Consequently, there is an urgent need to understand how SO marine life will cope with expected future changes in the environment. Studies of Antarctic organisms have shown that individual species and higher taxa display different degrees of sensitivity to environmental shifts, making it difficult to predict overall community or ecosystem responses. This emphasizes the need for an improved understanding of the Antarctic benthic ecosystem response to global climate change using a multitaxon approach with consideration of different levels of biological organization. Here, we provide a synthesis of the ability of five important Antarctic benthic taxa (Foraminifera, Nematoda, Amphipoda, Isopoda, and Echinoidea) to cope with changes in the environment (temperature, pH, ice cover, ice scouring, food quantity, and quality) that are linked to climatic changes. Responses from individual to the taxon-specific community level to these drivers will vary with taxon but will include local species extinctions, invasions of warmer-water species, shifts in diversity, dominance, and trophic group composition, all with likely consequences for ecosystem functioning. Limitations in our current knowledge and understanding of climate change effects on the different levels are discussed.

  11. Snapshot of cooling and drying before onset of Antarctic Glaciation

    NASA Astrophysics Data System (ADS)

    Feakins, Sarah J.; Warny, Sophie; DeConto, Robert M.

    2014-10-01

    The late Eocene to Oligocene transition (EOT) witnessed a major ice advance on Antarctica. Because of the paucity of accessible outcrops and difficult drilling logistics, little is known about hydrological conditions in the Antarctic Peninsula during the late Eocene prior to the major ice advance. Here we study hydrological conditions with proxy evidence from marine sediment core NBP0602A-3C, adjacent to the tip of the Antarctic Peninsula, with sediments dated to 35.9±1.1 Ma providing a snapshot of conditions prior to the EOT. We reconstruct conditions during the latest Eocene based on plant leaf wax hydrogen isotopic evidence (δDwax) paired with previously-published evidence from pollen assemblages, and compared to climate model experiments simulating conditions before, during and after the transition. The pollen from late Eocene sediments of NBP0602A-3C indicate a Nothofagidites (southern beech) dominated landscape. In the same sediments, δDwax values average -202±7‰ (1σ, n=22) for the C28n-alkanoic acid. Uncertainty around the appropriate net fractionation between water and wax (ɛwax/w) provides the largest degree of uncertainty in paleoprecipitation δD reconstructions and we therefore use two reasonable fractionations -100 and -60‰ to constrain the likely range of average precipitation δD values to between -113 and -151‰. Model experiments confirm that isotopic compositions show low sensitivity to temperature changes at the tip of the Antarctic Peninsula, in comparison to much larger changes in the continental interior. Across the interval sampled, a decline in pollen abundance from 105 to 103 gdw represents cooling and drying towards more tundra-like conditions. The 30‰ trend in δDwax values towards more positive values can best be explained by smaller fractionations as the vegetation shifted from forest to tundra, with greater water stress. Model results are broadly consistent with the data and quantify the cooling and drying across the full

  12. Adaptive evolution of hepcidin genes in antarctic notothenioid fishes.

    PubMed

    Xu, Qianghua; Cheng, Chi-Hing Christina; Hu, Peng; Ye, Hua; Chen, Zuozhou; Cao, Lixue; Chen, Lei; Shen, Yu; Chen, Liangbiao

    2008-06-01

    Hepcidin is a small bioactive peptide with dual roles as an antimicrobial peptide and as the principal hormonal regulator of iron homeostasis in human and mouse. Hepcidin homologs of very similar structures are found in lower vertebrates, all comprise approximately 20-25 amino acids with 8 highly conserved cysteines forming 4 intramolecular disulfide bonds, giving hepcidin a hairpin structure. Hepcidins are particularly diverse in teleost fishes, which may be related to the diversity of aquatic environments with varying degree of pathogen challenge, oxygenation, and iron concentration, factors known to alter hepcidin expression in mammals. We characterized the diversity of hepcidin genes of the Antarctic notothenioid fishes that are endemic to the world's coldest and most oxygen-rich marine water. Notothenioid fishes have at least 4 hepcidin variants, in 2 distinctive structural types. Type I hepcidins comprise 3 distinct variants that are homologs of the widespread 8-cysteine hepcidins. Type II is a novel 4-cysteine variant and therefore only 2 possible disulfide bonds, highly expressed in hematopoietic tissues. Analyses of d(N)/d(S) substitution rate ratios and likelihood ratio test under site-specific models detected significant signal of positive Darwinian selection on the mature hepcidin-coding sequence, suggesting adaptive evolution of notothenioid hepcidins. Genomic polymerase chain reaction and Southern hybridization showed that the novel type II hepcidin occurs exclusively in lineages of the Antarctic notothenioid radiation but not in the basal non-Antarctic taxa, and lineage-specific positive selection was detected on the branch leading to the type II hepcidin clade under branch-site models, suggesting adaptive evolution of the reduced cysteine variant in response to the polar environment. We also isolated a structurally distinct 4-cysteine (4cys) hepcidin from an Antarctic eelpout that is unrelated to the notothenioids but inhabits the same freezing

  13. Adaptive evolution of hepcidin genes in antarctic notothenioid fishes.

    PubMed

    Xu, Qianghua; Cheng, Chi-Hing Christina; Hu, Peng; Ye, Hua; Chen, Zuozhou; Cao, Lixue; Chen, Lei; Shen, Yu; Chen, Liangbiao

    2008-06-01

    Hepcidin is a small bioactive peptide with dual roles as an antimicrobial peptide and as the principal hormonal regulator of iron homeostasis in human and mouse. Hepcidin homologs of very similar structures are found in lower vertebrates, all comprise approximately 20-25 amino acids with 8 highly conserved cysteines forming 4 intramolecular disulfide bonds, giving hepcidin a hairpin structure. Hepcidins are particularly diverse in teleost fishes, which may be related to the diversity of aquatic environments with varying degree of pathogen challenge, oxygenation, and iron concentration, factors known to alter hepcidin expression in mammals. We characterized the diversity of hepcidin genes of the Antarctic notothenioid fishes that are endemic to the world's coldest and most oxygen-rich marine water. Notothenioid fishes have at least 4 hepcidin variants, in 2 distinctive structural types. Type I hepcidins comprise 3 distinct variants that are homologs of the widespread 8-cysteine hepcidins. Type II is a novel 4-cysteine variant and therefore only 2 possible disulfide bonds, highly expressed in hematopoietic tissues. Analyses of d(N)/d(S) substitution rate ratios and likelihood ratio test under site-specific models detected significant signal of positive Darwinian selection on the mature hepcidin-coding sequence, suggesting adaptive evolution of notothenioid hepcidins. Genomic polymerase chain reaction and Southern hybridization showed that the novel type II hepcidin occurs exclusively in lineages of the Antarctic notothenioid radiation but not in the basal non-Antarctic taxa, and lineage-specific positive selection was detected on the branch leading to the type II hepcidin clade under branch-site models, suggesting adaptive evolution of the reduced cysteine variant in response to the polar environment. We also isolated a structurally distinct 4-cysteine (4cys) hepcidin from an Antarctic eelpout that is unrelated to the notothenioids but inhabits the same freezing

  14. Phylogeography and demographic inference in Nacella ( Patinigera) concinna (Strebel, 1908) in the western Antarctic Peninsula

    NASA Astrophysics Data System (ADS)

    González-Wevar, Claudio A.; David, Bruno; Poulin, Elie

    2011-03-01

    Endemic to Antarctic ecosystems, the limpet Nacella ( Patinigera) concinna (Strebel, 1908) is an abundant and dominant marine benthic invertebrate of the intertidal and shallow subtidal zone. In order to examine the phylogeographic pattern and historical demography of the species along the western Antarctic Peninsula, we amplified 663 bp of the mitochondrial DNA cytochrome oxidase subunit I of 161 N. concinna specimens from five localities, as well as two specimens from South Georgia and Sub-Antarctic Marion Island. As two different morphotypes, one characterized by an elevated shell in the intertidal and the other by a flat one in the subtidal, have been recurrently reported for this species, we also compared intertidal and subtidal samples from two localities of King George Island (Admiralty and Fildes Bay) through geometric morphometric and genetic analyses. As a result, elliptic Fourier analyses on shell shape morphology detected highly significant differences between intertidal and subtidal morphotypes. In contrast, mtDNA analyses between these morphotypes did not detect statistical differences between them and support the hypothesis that subtidal and intertidal N. concinna forms correspond to be the same population unit. Genetic analyses depicted low levels of haplotypic and nucleotide diversity in N. concinna in all localities. Among populations, comparisons did not detect any genetic structure, supporting the existence of a single genetic unit along the western Antarctic Peninsula. A marked L-shaped distribution of pairwise differences and significant negative Tajima's D and Fu's FS indices suggest the existence of a recent demographic expansion of this species. Time estimations corrected by the "time dependency of molecular rate" hypothesis for this demographic event (7,500-22,000 years ago) fit well with the last glacial-interglacial transition period. Low levels of genetic diversity in N. concinna could reflect the dramatic effect of glacial periods on

  15. Crustal and lithospheric structure of the west Antarctic Rift System from geophysical investigations: a review

    USGS Publications Warehouse

    Behrendt, John C.

    1999-01-01

    The active West Antarctic Rift System, which extends from the continental shelf of the Ross Sea, beneath the Ross Ice Shelf and the West Antarctic Ice Sheet, is comparable in size to the Basin and Range in North America, or the East African rift systems. Geophysical surveys (primarily marine seismic and aeromagnetic combined with radar ice sounding) have extended the information provided by sparse geologic exposures and a few drill holes over the ice and sea covered area. Rift basins developed in the early Cretaceous accompanied by the major extension of the region. Tectonic activity has continued episodically in the Cenozoic to the present, including major uplift of the Transantarctic Mountains. The West Antarctic ice sheet, and the late Cenozoic volcanic activity in the West Antarctic Rift System, through which it flows, have been coeval since at least Miocene time. The rift is characterized by sparse exposures of late Cenozoic alkaline volcanic rocks extending from northern Victoria Land throughout Marie Byrd Land. The aeromagnetic interpretations indicate the presence of > 5 x 105 km2 (> 106 km3) of probable late Cenozoic volcanic rocks (and associated subvolcanic intrusions) in the West Antarctic rift. This great volume with such limited exposures is explained by glacial removal of the associated late Cenozoic volcanic edifices (probably hyaloclastite debris) concomitantly with their subglacial eruption. Large offset seismic investigations in the Ross Sea and on the Ross Ice Shelf indicate a ~ 17-24-km-thick, extended continental crust. Gravity data suggest that this extended crust of similar thickness probably underlies the Ross Ice Shelf and Byrd Subglacial Basin. Various authors have estimated maximum late Cretaceous-present crustal extension in the West Antarctic rift area from 255-350 km based on balancing crustal thickness. Plate reconstruction allowed < 50 km of Tertiary extension. However, paleomagnetic measurements suggested about 1000 km of post

  16. Antarctic Ozone: Theory and Observation.

    NASA Astrophysics Data System (ADS)

    Salawitch, Ross Jay

    The amount of ozone observed in October over Antarctica has fallen steadily and precipitously in the last decade. Observational data describing the phenomenology of the Antarctic ozone reduction are reviewed, followed by the presentation of theories that seek to account for the observed ozone reductions while satisfying other available constraints. We begin with a discussion of the thermodynamic properties of solid phases containing HCl and HNO_3. The presence of clouds in the Antarctic stratosphere, caused be extremely low temperatures during spring, leads to condensation and precipitation of HNO_3, and condensation and reaction of HCl. Both processes lead to the conversion of unreactive forms of chlorine to chlorine oxides, which participate in a sequence of chemical reactions that consume ozone. A chemical model that incorporates the influence of cloud catalyzed heterogeneous reactions is compared in detail to the interferometric measurements of HCl, ClNO_3, HNO_3 , NO_2, and NO obtained over Antarctica during the spring of 1986 (Farmer et al., 1987). Model results are consistent with observed temporal trends of these species and with trends for total column ozone reported by Stolarski et al. (1986). Loss of ozone is attributed to the catalytic influence of chlorine and bromine radicals, in cycles suggested by McElroy et al. (1986b) and Molina and Molina (1987). Constraints are then placed on the abundance of stratospheric bromine by analysis of observations of OClO over Antarctica during the spring of 1986 (Solomon et al., 1987a). The diurnal variation of OClO is consistent with 16 +/- 4 ppt of stratospheric bromine if a fraction of the overall ClO + BrO reaction proceeds through a channel resulting in the production of BrCl. Bromine levels in this range would contribute approximately 20% of the total ozone loss. Finally, it is shown that the production of reactive chlorine oxides by heterogeneous processes depends on the initial concentration of HCl relative

  17. Telemedicine in the British Antarctic survey.

    PubMed

    Grant, Iain C

    2004-12-01

    Medicine in the Antarctic is probably the most isolated situation in which a doctor can practise, differing in degree of severity even from that of the Arctic region. The increasing use of Telemedicine has helped to reduce this isolation and to improve access to secondary healthcare for those who live in the most remote bases in the world. The article describes the way in which Antarctic Telemedicine has evolved in the British Antarctic survey, outlining the use of low cost and low technology systems to improve the availability of emergency advice, both to the doctor and to isolated field parties, specialist consultation, medical education, and healthcare records. The Antarctic is a useful proving ground for technologies which may have applications in space and other extreme and isolated environments.

  18. Conservation in the Antarctic and Subantarctic

    ERIC Educational Resources Information Center

    McKenzie, D.

    1972-01-01

    Discusses briefly the ecosystems which have existed for a long time in the Antarctic region. Article indicates unwise killing of animals in that region may disturb important ecosystems which is unsound for economic benefits over a longer period. (PS)

  19. Formation of the 1988 Antarctic ozone hole

    SciTech Connect

    Krueger, A.J.; Stolarski, R.S.; Schoeberl, M.R. )

    1989-05-01

    The 1988 Antarctic ozone hole, as observed with the Nimbus 7 TOMS instrument, formed in August but failed to deepen significantly during September. The structure of the surrounding total ozone maxima also differed from the prior year. The 1987 total ozone pattern was pole centered and symmetrical. During 1988 a persistent strong wavenumber 1 perturbation in total ozone developed in August which resulted in displacement of the polar ozone minimum to the base of the Antarctic Peninsula. Subsequently, a series of transient events diminished and a larger scale decrease in polar total ozone began. The decrease lasted less than two weeks, resulting in a net change of only 25 DU compared with the nearly 100 DU decline observed during the same period in 1987. The minimum values remained roughly constant until October 19, 1988 and then increased rapidly. The 1988 Antarctic ozone hole subsequently drifted off the Antarctic continent in late October and dissipated in mid-November.

  20. Understanding Antarctic Climate and Glacial History

    NASA Astrophysics Data System (ADS)

    DeConto, Rob; Escutia, Carlota

    2010-01-01

    First Antarctic Climate Evolution Symposium; Granada, Spain, 7-11 September 2009; Antarctic Climate Evolution (ACE; http://www.ace.scar.org), a scientific research project of the Scientific Committee on Antarctic Research and a core International Polar Year project, held its first international symposium in Spain in September 2009. ACE's mission is to facilitate the study of Antarctic climate and glacial history through integration of numerical modeling with geophysical and geological data. Nearly 200 international scientists from the fields of climate, ocean, and ice modeling joined geologists, geophysicists, and geochemists for 5 days of intense interaction. Oral sessions were plenary and were limited to allow time for poster viewing, discussion, and workshops (http://www.acegranada2009.com/).

  1. Deciphering Neogene Antarctic climate history is certainly important, but documenting Pleistocene events may be more relevant to prediction

    NASA Astrophysics Data System (ADS)

    Scherer, R. P.

    2004-12-01

    This AGU session description states, "Scenarios for future climate change indicate that within the next 100 to 400 years, global annual average surface temperatures will increase by several degrees. The Neogene represents the last time in Earth history when comparable warming occurred.The aim of the session is to synthesize results from marine and terrestrial proxy data for the Miocene and Pliocene and to combine them with outputs derived from numerical climate and ice-sheet models." Yes, Miocene and Pliocene proxies are critically important to understanding Cenozoic stepwise cooling and the polar climatic isolation of Antarctica. But at least equally important is understanding Antarctic climate dynamics during Pleistocene warm interglacials. These did not dramatically affect the East Antarctic ice sheet (EAIS), but the West Antarctic ice sheet (WAIS) has a history of Pleistocene advance and retreat well beyond its current configuration. Such changes have global consequences for sea-level, bottom water formation, and ocean circulation. The WAIS is the most dynamic of the world's existing large ice sheets, and it is the source of the largest ice shelves. Global warming may already be affecting the stability of the WAIS and the ice shelves. I will review geologic evidence for Quaternary warm interglacials in the Antarctic (e.g., MIS- 5e, MIS-11, MIS-31, others), including subglacial sediments, drill cores from the Antarctic marginal seas, Southern Ocean sediments, marine deposits in outcrop, sea-level records, and Antarctic terrestrial deposits including lake cores. These will be discussed in the context of WAIS and Ross Ice Shelf history and dynamics.

  2. Productivity and linkages of the food web of the southern region of the western Antarctic Peninsula continental shelf

    NASA Astrophysics Data System (ADS)

    Ballerini, Tosca; Hofmann, Eileen E.; Ainley, David G.; Daly, Kendra; Marrari, Marina; Ribic, Christine A.; Smith, Walker O.; Steele, John H.

    2014-03-01

    The productivity and linkages in the food web of the southern region of the west Antarctic Peninsula continental shelf were investigated using a multi-trophic level mass balance model. Data collected during the Southern Ocean Global Ocean Ecosystem Dynamics field program were combined with data from the literature on the abundance and diet composition of zooplankton, fish, seabirds and marine mammals to calculate energy flows in the food web and to infer the overall food web structure at the annual level. Sensitivity analyses investigated the effects of variability in growth and biomass of Antarctic krill (Euphausia superba) and in the biomass of Antarctic krill predators on the structure and energy fluxes in the food web. Scenario simulations provided insights into the potential responses of the food web to a reduced contribution of large phytoplankton (diatom) production to total primary production, and to reduced consumption of primary production by Antarctic krill and mesozooplankton coincident with increased consumption by microzooplankton and salps. Model-derived estimates of primary production were 187-207 g C m-2 y-1, which are consistent with observed values (47-351 g C m-2 y-1). Simulations showed that Antarctic krill provide the majority of energy needed to sustain seabird and marine mammal production, thereby exerting a bottom-up control on higher trophic level predators. Energy transfer to top predators via mesozooplanton was a less efficient pathway, and salps were a production loss pathway because little of the primary production they consumed was passed to higher trophic levels. Increased predominance of small phytoplankton (nanoflagellates and cryptophytes) reduced the production of Antarctic krill and of its predators, including seabirds and seals.

  3. Marine Careers.

    ERIC Educational Resources Information Center

    Gordon, Bernard L.

    The five papers in this publication on marine careers were selected so that science teachers, guidance councilors, and students could benefit from the experience and knowledge of individuals active in marine science. The areas considered are indicated by the titles: Professional Careers in Marine Science with the Federal Government, Marine Science…

  4. Denitrification in the Antarctic stratosphere

    NASA Technical Reports Server (NTRS)

    Salawitch, R. J.; Gobbi, G. P.; Wofsy, S. C.; Mcelroy, M. B.

    1989-01-01

    Rapid loss of ozone over Antarctica in spring requires that the abundance of gaseous nitric acid be very low. Precipitation of particulate nitric acid has been assumed to occur in association with large ice crystals, requiring significant removal of H2O and temperatures well below the frost point. However, stratospheric clouds exhibit a bimodal size distribution in the Antarctic atmosphere, with most of the nitrate concentrated in particles with radii of 1 micron or greater. It is argued here that the bimodal size distribution sets the stage for efficient denitrification, with nitrate particles either falling on their own or serving as nuclei for the condensation of ice. Denitrification can therefore occur without significant dehydration, and it is unnecessary for temperatures to drop significantly below the frost point.

  5. Lipid A structure of Pseudoalteromonas haloplanktis TAC 125: use of electrospray ionization tandem mass spectrometry for the determination of fatty acid distribution.

    PubMed

    Corsaro, Maria Michela; Piaz, Fabrizio Dal; Lanzetta, Rosa; Parrilli, Michelangelo

    2002-05-01

    The use of electrospray Ionization (ESI) tandem mass spectrometry (MS/MS) for the structural determination of the lipid A components of the psychrophilic bacterium Pseudoalteromonas haloplanktis TAC 125 is reported. The lipid A contains the classical bisphosphorylated beta-(1' --> 6)-linked D-glucosamine disaccharide with 3-hydroxydodecanoyl residues (12 : 0 (3-OH)) linked both as esters and amides to 2', 3' (distal glucosamine) and 2, 3 positions (proximal glucosamine) of the sugar backbone. The hydroxyl of 12 : 0 (3-OH) fatty acid linked at the 3' position is esterified by a dodecanoyl residue (12 : 0). In addition to the pentaacyl component, a minor tetraacyl lipid A, lacking the acyl residue at position 3, was also found in the lipid A fraction. The advantage of this MS technique for the investigation of the intra-ring fragmentation, which is useful for the determination of fatty acyl residue distribution on each glucosamine unit, is emphasized.

  6. Satellites reveal Antarctic mass imbalance

    NASA Astrophysics Data System (ADS)

    Shepherd, A.

    2004-05-01

    Satellite radar observations have revealed a widespread mass imbalance in western Antarctica and rapid thinning of ice shelves at the Antarctic Peninsula. The former shows grounded ice retreat in a region previously considered unstable to such events, and the latter illuminates an ongoing debate as to the mechanism through which ice shelves have disintegrated over the past decade. Both measurements inform us as to the present state of balance of the cryosphere and its interactions with the southern oceans. Since 1992, the Amundsen Sea sector of the West Antarctic Ice Sheet has lost 39 cubic kilometers of its volume each year due to an imbalance between snow accumulation and ice discharge. A flow disturbance is responsible for removing the majority of that ice from the trunks of the Pine Island, Thwaites and Smith glacier drainage systems, raising global sea level by over 1 mm during the past decade alone. The coincidence of rapid ice thinning at the Amundsen Coast and warm circumpolar deep water intrusion in Pine Island Bay, coupled with a ~ 50 cubic kilometre annual freshening of the Ross Sea Gyre downstream, makes ocean melting an attractive proposition for the origin of the regional disturbance. At the same time, the Larsen Ice Shelf surface has lowered by up to 0.27 m per year, in tandem with a period of atmospheric warming and ice shelf collapse. The lowering cannot be explained by increased summer melt-water production alone, and must reflect a loss of basal ice through melting. Ocean temperature measurements close to the ice shelf barrier support this conclusion, making enhanced basal ice melting a likely factor linking the regional climate warming and the successive disintegration of sections of the Larsen Ice Shelf.

  7. A Biophysical and Economic Profile of South Georgia and the South Sandwich Islands as Potential Large-Scale Antarctic Protected Areas.

    PubMed

    Rogers, Alex D; Yesson, Christopher; Gravestock, Pippa

    2015-01-01

    The current hiatus in the establishment of a network of marine protected areas (MPAs) in the Antarctic means that other routes to conservation are required. The protection of overseas territories in the Antarctic and sub-Antarctic represents one way to advance the initiation of such a network. This review of the physical and biological features of the United Kingdom (U.K.) overseas territories of South Georgia and South Sandwich Islands (SGSSI) is undertaken to estimate the importance of the islands in terms of marine conservation in the Southern Ocean and globally. The economy and management of SGSSI are also analysed, and the question of whether the islands already have sufficient protection to constitute part of an Antarctic network of MPAs is assessed. The SGSSI comprise unique geological and physical features, a diverse marine biota, including a significant proportion of endemic species and globally important breeding populations of marine predators. Regardless of past exploitation of biotic resources, such as seals, whales and finfish, SGSSI would make a significant contribution to biological diversity in an Antarctic network of MPAs. At present, conservation measures do not adequately protect all of the biological features that render the islands so important in terms of conservation at a regional and global level. However, a general lack of data on Antarctic marine ecosystems (particularly needed for SGSSSI) makes it difficult to assess this fully. One barrier to achieving more complete protection is the continuing emphasis on fishing effort in these waters by U.K. government. Other non-U.K. Antarctic overseas territories of conservation importance are also compromised as MPAs because of the exploitation of fisheries resources in their waters. The possible non-use values of SGSSI as well as the importance of ecosystem services that are indirectly used by people are outlined in this review. Technology is improving the potential for management of remote MPAs

  8. A Biophysical and Economic Profile of South Georgia and the South Sandwich Islands as Potential Large-Scale Antarctic Protected Areas.

    PubMed

    Rogers, Alex D; Yesson, Christopher; Gravestock, Pippa

    2015-01-01

    The current hiatus in the establishment of a network of marine protected areas (MPAs) in the Antarctic means that other routes to conservation are required. The protection of overseas territories in the Antarctic and sub-Antarctic represents one way to advance the initiation of such a network. This review of the physical and biological features of the United Kingdom (U.K.) overseas territories of South Georgia and South Sandwich Islands (SGSSI) is undertaken to estimate the importance of the islands in terms of marine conservation in the Southern Ocean and globally. The economy and management of SGSSI are also analysed, and the question of whether the islands already have sufficient protection to constitute part of an Antarctic network of MPAs is assessed. The SGSSI comprise unique geological and physical features, a diverse marine biota, including a significant proportion of endemic species and globally important breeding populations of marine predators. Regardless of past exploitation of biotic resources, such as seals, whales and finfish, SGSSI would make a significant contribution to biological diversity in an Antarctic network of MPAs. At present, conservation measures do not adequately protect all of the biological features that render the islands so important in terms of conservation at a regional and global level. However, a general lack of data on Antarctic marine ecosystems (particularly needed for SGSSSI) makes it difficult to assess this fully. One barrier to achieving more complete protection is the continuing emphasis on fishing effort in these waters by U.K. government. Other non-U.K. Antarctic overseas territories of conservation importance are also compromised as MPAs because of the exploitation of fisheries resources in their waters. The possible non-use values of SGSSI as well as the importance of ecosystem services that are indirectly used by people are outlined in this review. Technology is improving the potential for management of remote MPAs

  9. Ross Ice Shelf, Antarctic Ice and Clouds

    NASA Technical Reports Server (NTRS)

    1991-01-01

    In this view of Antarctic ice and clouds, (56.5S, 152.0W), the Ross Ice Shelf of Antarctica is almost totally clear, showing stress cracks in the ice surface caused by wind and tidal drift. Clouds on the eastern edge of the picture are associated with an Antarctic cyclone. Winds stirred up these storms have been known to reach hurricane force.

  10. Breakup of Pack Ice, Antarctic Ice Shelf

    NASA Technical Reports Server (NTRS)

    1991-01-01

    Breakup of Pack Ice along the periphery of the Antarctic Ice Shelf (53.5S, 3.0E) produced this mosaic of ice floes off the Antarctic Ice Shelf. Strong offshore winds, probably associated with strong katabatic downdrafts from the interior of the continent, are seen peeling off the edges of the ice shelf into long filamets of sea ice, icebergs, bergy bits and growlers to flow northward into the South Atlantic Ocean. 53.5S, 3.0E

  11. Understanding and protecting the world's biodiversity: the role and legacy of the SCAR programme "Evolution and Biodiversity in the Antarctic".

    PubMed

    di Prisco, Guido; Convey, Peter; Gutt, Julian; Cowan, Don; Conlan, Kathleen; Verde, Cinzia

    2012-12-01

    Current global changes are prompting scientists and governments to consider the risk of extinction of species inhabiting environments influenced by ice. Concerted, multidisciplinary, international programmes aimed at understanding life processes, evolution and adaptations in the Polar Regions will help to counteract such an event by protecting polar life and ecosystems. There is a long tradition of international scientific cooperation in Antarctica that provides a strong foundation for such approaches. While basic understanding is emerging, we still largely lack predictive biological models, and need to achieve further integration amongst biological and non-biological disciplines. The ongoing SCAR Science Research Programme, "Evolution and Biodiversity in the Antarctic (EBA)" has successfully carried out its crucial role of providing an overarching umbrella for SCAR research in Life Sciences. Now is the time for aiming to progress beyond this important role, and the Antarctic biology community is proposing two programmes, focussed on distinct but complementary aspects of polar biology and working across marine, freshwater and terrestrial environments: "State of the Antarctic Ecosystem (AntEco)", and "Antarctic Thresholds--Ecosystem Resilience and Adaptation (AnT-ERA)". These programmes are the legacy of EBA, and they are key to understanding and protect Antarctic biodiversity.

  12. The diatom record from beneath the West Antarctic Ice Sheet and the global proxy perspective

    NASA Technical Reports Server (NTRS)

    Scherer, Reed P.

    1993-01-01

    Recent glaciological evaluation and modeling of the marine-based West Antarctic Ice Sheet (WAIS) support the possibility that the WAIS disintegrated during one or more Pleistocene interglacial period(s). The magnitude of sea level and oxygen isotope variation during certain late-Pleistocene interglacial periods is also consistent with the possibility of major retreat of the WAIS. Although oxygen isotopes from deep-sea sediments provide the best available proxy record for global ice volume (despite the ambiguities in the record), the source of ice volume changes must be hypothesized. Based on the intensity of interglacial isotopic shifts recorded in Southern Ocean marine sedimentary records, stage 11 (400,000 years ago) is the strongest candidate for WAIS collapse, but the records for stages 9, 7, and 5.5 are all consistent with the possibility of multiple late-Pleistocene collapses. Seismic reflection studies through the WAIS have revealed thick successions of strata with seismic characteristics comparable to upper Tertiary marine sediments. Small samples of glacial diamictons from beneath the ice sheet have been collected via hot-water drilled access holes. These sediments include mixed diatom assemblages of varying ages. Late-Miocene diatoms dominate many samples, probably reflecting marine deposition in West Antarctic basins prior to development of a dominantly glacial phase in West Antarctica. In addition to late-Miocene diatoms, samples from Upstream B (1988/89) contain rare post-Miocene diatoms, many of which imply deposition in the West Antarctic interior during one or more Pleistocene deglaciation periods. Age-diagnostic fossils in glacial sediments beneath ice sheets provide relatively coarse chronostratigraphic control, but they do contain direct evidence of regional deglaciation. Thus, sub-glacial till samples provide the evidence regarding the source of ice sheet variability seen in well-dated proxy records. Combined, these independent data sets can

  13. The antimicrobial activity of heterotrophic bacteria isolated from the marine sponge Erylus deficiens (Astrophorida, Geodiidae)

    PubMed Central

    Graça, Ana Patrícia; Viana, Flávia; Bondoso, Joana; Correia, Maria Inês; Gomes, Luis; Humanes, Madalena; Reis, Alberto; Xavier, Joana R.; Gaspar, Helena; Lage, Olga M.

    2015-01-01

    Interest in the study of marine sponges and their associated microbiome has increased both for ecological reasons and for their great biotechnological potential. In this work, heterotrophic bacteria associated with three specimens of the marine sponge Erylus deficiens, were isolated in pure culture, phylogenetically identified and screened for antimicrobial activity. The isolation of bacteria after an enrichment treatment in heterotrophic medium revealed diversity in bacterial composition with only Pseudoalteromonas being shared by two specimens. Of the 83 selected isolates, 58% belong to Proteobacteria, 23% to Actinobacteria and 19% to Firmicutes. Diffusion agar assays for bioactivity screening against four bacterial strains and one yeast, revealed that a high number of the isolated bacteria (68.7%) were active, particularly against Candida albicans and Vibrio anguillarum. Pseudoalteromonas, Microbacterium, and Proteus were the most bioactive genera. After this preliminary screening, the bioactive strains were further evaluated in liquid assays against C. albicans, Bacillus subtilis and Escherichia coli. Filtered culture medium and acetone extracts from three and 5 days-old cultures were assayed. High antifungal activity against C. albicans in both aqueous and acetone extracts as well as absence of activity against B. subtilis were confirmed. Higher levels of activity were obtained with the aqueous extracts when compared to the acetone extracts and differences were also observed between the 3 and 5 day-old extracts. Furthermore, a low number of active strains was observed against E. coli. Potential presence of type-I polyketide synthases (PKS-I) and non-ribosomal peptide synthetases (NRPSs) genes were detected in 17 and 30 isolates, respectively. The high levels of bioactivity and the likely presence of associated genes suggest that Erylus deficiens bacteria are potential sources of novel marine bioactive compounds. PMID:25999928

  14. The antimicrobial activity of heterotrophic bacteria isolated from the marine sponge Erylus deficiens (Astrophorida, Geodiidae).

    PubMed

    Graça, Ana Patrícia; Viana, Flávia; Bondoso, Joana; Correia, Maria Inês; Gomes, Luis; Humanes, Madalena; Reis, Alberto; Xavier, Joana R; Gaspar, Helena; Lage, Olga M

    2015-01-01

    Interest in the study of marine sponges and their associated microbiome has increased both for ecological reasons and for their great biotechnological potential. In this work, heterotrophic bacteria associated with three specimens of the marine sponge Erylus deficiens, were isolated in pure culture, phylogenetically identified and screened for antimicrobial activity. The isolation of bacteria after an enrichment treatment in heterotrophic medium revealed diversity in bacterial composition with only Pseudoalteromonas being shared by two specimens. Of the 83 selected isolates, 58% belong to Proteobacteria, 23% to Actinobacteria and 19% to Firmicutes. Diffusion agar assays for bioactivity screening against four bacterial strains and one yeast, revealed that a high number of the isolated bacteria (68.7%) were active, particularly against Candida albicans and Vibrio anguillarum. Pseudoalteromonas, Microbacterium, and Proteus were the most bioactive genera. After this preliminary screening, the bioactive strains were further evaluated in liquid assays against C. albicans, Bacillus subtilis and Escherichia coli. Filtered culture medium and acetone extracts from three and 5 days-old cultures were assayed. High antifungal activity against C. albicans in both aqueous and acetone extracts as well as absence of activity against B. subtilis were confirmed. Higher levels of activity were obtained with the aqueous extracts when compared to the acetone extracts and differences were also observed between the 3 and 5 day-old extracts. Furthermore, a low number of active strains was observed against E. coli. Potential presence of type-I polyketide synthases (PKS-I) and non-ribosomal peptide synthetases (NRPSs) genes were detected in 17 and 30 isolates, respectively. The high levels of bioactivity and the likely presence of associated genes suggest that Erylus deficiens bacteria are potential sources of novel marine bioactive compounds.

  15. The SCAR Standing Committee on Antarctic Data Management - new directions in access to Antarctic research data

    NASA Astrophysics Data System (ADS)

    de Bruin, T.

    2009-04-01

    The SCAR Standing Committee on Antarctic Data Management (SC-ADM) was established by the Scientific Committee on Antarctic Research (SCAR) and the Council of Managers of National Antarctic Programs (COMNAP), to assist in the fulfillment of the data management obligations imposed by the Antarctic Treaty (section III.1.c): "Scientific observations and results from Antarctica shall be exchanged and made freely available." SC-ADM comprises representatives of the National Antarctic Data Centres or national points of contact. Currently 31 nations around the world are represented in SC-ADM. So far, SC-ADM has been focussing on the coordination of the Antarctic Master Directory (AMD), the internationally accessible, web-based, searchable record of Antarctic and Southern Ocean data set descriptions. The AMD is directly integrated into the international Global Change Master Directory (GCMD) to help further merge Antarctic science into global science. The AMD is a resource for scientists to advertise the data they have collected and to search for data they may need. Currently, SC-ADM is in a transition phase, moving forward to provide data access. Existing systems and web services technology will be used as much as possible, to increase efficiency and prevent 're-inventing the wheel' This poster will give an overview of this process, the current status and the expected results.

  16. Marine cloud brightening: regional applications

    PubMed Central

    Latham, John; Gadian, Alan; Fournier, Jim; Parkes, Ben; Wadhams, Peter; Chen, Jack

    2014-01-01

    The general principle behind the marine cloud brightening (MCB) climate engineering technique is that seeding marine stratocumulus clouds with substantial concentrations of roughly monodisperse sub-micrometre-sized seawater particles might significantly enhance cloud albedo and longevity, thereby producing a cooling effect. This paper is concerned with preliminary studies of the possible beneficial application of MCB to three regional issues: (1) recovery of polar ice loss, (2) weakening of developing hurricanes and (3) elimination or reduction of coral bleaching. The primary focus is on Item 1. We focus discussion herein on advantages associated with engaging in limited-area seeding, regional effects rather than global; and the levels of seeding that may be required to address changing current and near-term conditions in the Arctic. We also mention the possibility that MCB might be capable of producing a localized cooling to help stabilize the West Antarctic Ice Sheet. PMID:25404682

  17. Marine cloud brightening: regional applications.

    PubMed

    Latham, John; Gadian, Alan; Fournier, Jim; Parkes, Ben; Wadhams, Peter; Chen, Jack

    2014-12-28

    The general principle behind the marine cloud brightening (MCB) climate engineering technique is that seeding marine stratocumulus clouds with substantial concentrations of roughly monodisperse sub-micrometre-sized seawater particles might significantly enhance cloud albedo and longevity, thereby producing a cooling effect. This paper is concerned with preliminary studies of the possible beneficial application of MCB to three regional issues: (1) recovery of polar ice loss, (2) weakening of developing hurricanes and (3) elimination or reduction of coral bleaching. The primary focus is on Item 1. We focus discussion herein on advantages associated with engaging in limited-area seeding, regional effects rather than global; and the levels of seeding that may be required to address changing current and near-term conditions in the Arctic. We also mention the possibility that MCB might be capable of producing a localized cooling to help stabilize the West Antarctic Ice Sheet.

  18. Unexpected occurrence of volatile dimethylsiloxanes in Antarctic soils, vegetation, phytoplankton, and krill.

    PubMed

    Sanchís, Josep; Cabrerizo, Ana; Galbán-Malagón, Cristóbal; Barceló, Damià; Farré, Marinella; Dachs, Jordi

    2015-04-01

    Volatile methyl siloxanes (VMS) are high-production synthetic compounds, ubiquitously found in the environment of source regions. Here, we show for the first time the occurrence of VMS in soils, vegetation, phytoplankton, and krill samples from the Antarctic Peninsula region, which questions previous claims that these compounds are "flyers" and do not significantly reach remote ecosystems. Cyclic VMS are the predominant compounds, with concentrations ranging from the limits of detection to 110 ng/g in soils. Concentrations of cyclic VMS in phytoplankton are negatively correlated with sea surface salinity, indicating a source from ice and snow melting and consistent with snow depositional inputs. After the summer snow melting, VMS accumulate in the Southern Ocean and Antarctic biota. Therefore, once introduced into the marine environment, VMS are eventually trapped by the biological pump and, thus, behave as "single hoppers". Conversely, VMS in soils and vegetation behave as "multiple hoppers" due to their high volatility.

  19. Direct linking of Greenland and Antarctic ice cores at the Toba eruption (74 ka BP)

    NASA Astrophysics Data System (ADS)

    Svensson, A.; Bigler, M.; Blunier, T.; Clausen, H. B.; Dahl-Jensen, D.; Fischer, H.; Fujita, S.; Goto-Azuma, K.; Johnsen, S. J.; Kawamura, K.; Kipfstuhl, S.; Kohno, M.; Parrenin, F.; Popp, T.; Rasmussen, S. O.; Schwander, J.; Seierstad, I.; Severi, M.; Steffensen, J. P.; Udisti, R.; Uemura, R.; Vallelonga, P.; Vinther, B. M.; Wegner, A.; Wilhelms, F.; Winstrup, M.

    2013-03-01

    The Toba eruption that occurred some 74 ka ago in Sumatra, Indonesia, is among the largest volcanic events on Earth over the last 2 million years. Tephra from this eruption has been spread over vast areas in Asia, where it constitutes a major time marker close to the Marine Isotope Stage 4/5 boundary. As yet, no tephra associated with Toba has been identified in Greenland or Antarctic ice cores. Based on new accurate dating of Toba tephra and on accurately dated European stalagmites, the Toba event is known to occur between the onsets of Greenland interstadials (GI) 19 and 20. Furthermore, the existing linking of Greenland and Antarctic ice cores by gas records and by the bipolar seesaw hypothesis suggests that the Antarctic counterpart is situated between Antarctic Isotope Maxima (AIM) 19 and 20. In this work we suggest a direct synchronization of Greenland (NGRIP) and Antarctic (EDML) ice cores at the Toba eruption based on matching of a pattern of bipolar volcanic spikes. Annual layer counting between volcanic spikes in both cores allows for a unique match. We first demonstrate this bipolar matching technique at the already synchronized Laschamp geomagnetic excursion (41 ka BP) before we apply it to the suggested Toba interval. The Toba synchronization pattern covers some 2000 yr in GI-20 and AIM-19/20 and includes nine acidity peaks that are recognized in both ice cores. The suggested bipolar Toba synchronization has decadal precision. It thus allows a determination of the exact phasing of inter-hemispheric climate in a time interval of poorly constrained ice core records, and it allows for a discussion of the climatic impact of the Toba eruption in a global perspective. The bipolar linking gives no support for a long-term global cooling caused by the Toba eruption as Antarctica experiences a major warming shortly after the event. Furthermore, our bipolar match provides a way to place palaeo-environmental records other than ice cores into a precise climatic

  20. Estimating the climate variability of the last millennium on the East Antarctic plateau

    NASA Astrophysics Data System (ADS)

    Münch, Thomas; Laepple, Thomas

    2016-04-01

    Quantitative knowledge about the climate variability on the Antarctic continent is crucial to attribute and detect the anthropogenic influence, and to understand the past and future evolution of the Antarctic ice sheet. Isotope records from firn and ice cores provide information about Holocene climate variability but strong non-climate effects hamper their quantitative interpretation, especially in low-accumulation regions. So far, the magnitude and time-scale dependency of both the climate signal and the noise is largely unknown. Here, we combine 16 annually-resolved firn cores spanning the last 200 years, three records covering the last millennium as well as surface snow data from the Amundsenisen region on the East Antarctic plateau. By means of a spectral correction technique we can separate the climate signal from noise and derive, for the first time, a time-scale dependent estimate of East-Antarctic temperature variability. Our preliminary results indicate that, unlike the raw isotope data, the obtained temperature variability for our study region shows a scaling behavior with more variability on longer time scales, similar to estimates from marine SST records. The noise levels we find are in accordance with the independent surface snow sampling results from Kohnen station. An analysis of the variability in current climate models on the other hand suggests less variability on centennial time scales. The discrepancy between the model and data-based results indicates either deficiencies in the model simulations, or further unknown processes affecting the ice-core records. Our estimate of East-Antarctic climate variability thus highlights the importance of an improved understanding of Holocene climate and ice-core derived variability.

  1. Cenozoic prograding sequences of the Antarctic continental margin - What balance between structural and eustatic control

    SciTech Connect

    Cooper, A.K. ); Barrett, P. ); Hinz, K. ); Stagg, H. ); Traube, V. )

    1990-05-01

    Multichannel seismic reflection profiles across the Antarctic continental margin commonly reveal prograding sedimentary sequences that are bounded by unconformities. These sequences are as much as 5 km thick and, where sampled, are composed entirely of late Eocene( )-early Oligocene and younger glacial rocks. On nonpolar margins, prograding sequences generally are attributed to relative changes in sea level, sediment supply, and tectonism. Around Antarctica, ice sheets have also been important in controlling the geometry and location of prograding sequences. The Antarctic sequences may provide a proximal record of major Cenozoic ice volume changes and related sea level changes not obtainable from low-latitude continental shelves. Presently, the Antarctic record is poorly known because of limited core data. Two categories of prograding (P) and aggrading (A) sigmoidal sequences are observed around Antarctica: (1) P sequences that build principally outward (common) and (2) AP sequences that build largely upward and outward (less common). P sequences may result principally from grounded ice sheets, and AP sequences from open-marine basinal processes. Major rift embayments of Antarctica (e.g., eastern Ross Sea eastern Weddell Sea Lambert graben Wilkes basin) are also pathways for major ice movement. In general, most areas with P sequences lie within or adjacent to Mesozoic or older rift embayment, whereas the primary area with AP sequences (eastern Ross Sea) lies within a likely Cenozoic rift embayment. The Pacific side of the Antarctic Peninsula where Cenozoic ice sheets and Cenozoic tectonism have been active, is also marked by a P sequence. Scientific drilling on the Antarctic continental shelf has recovered openwater glacial deposits (Ross Sea) as well as glacial diamicts that were deposited beneath and in front of grounded glacier ice (Ross Sea and Prydz Bay).

  2. Holocene Southern Ocean surface temperature variability west of the Antarctic Peninsula.

    PubMed

    Shevenell, A E; Ingalls, A E; Domack, E W; Kelly, C

    2011-02-10

    The disintegration of ice shelves, reduced sea-ice and glacier extent, and shifting ecological zones observed around Antarctica highlight the impact of recent atmospheric and oceanic warming on the cryosphere. Observations and models suggest that oceanic and atmospheric temperature variations at Antarctica's margins affect global cryosphere stability, ocean circulation, sea levels and carbon cycling. In particular, recent climate changes on the Antarctic Peninsula have been dramatic, yet the Holocene climate variability of this region is largely unknown, limiting our ability to evaluate ongoing changes within the context of historical variability and underlying forcing mechanisms. Here we show that surface ocean temperatures at the continental margin of the western Antarctic Peninsula cooled by 3-4 °C over the past 12,000 years, tracking the Holocene decline of local (65° S) spring insolation. Our results, based on TEX(86) sea surface temperature (SST) proxy evidence from a marine sediment core, indicate the importance of regional summer duration as a driver of Antarctic seasonal sea-ice fluctuations. On millennial timescales, abrupt SST fluctuations of 2-4 °C coincide with globally recognized climate variability. Similarities between our SSTs, Southern Hemisphere westerly wind reconstructions and El Niño/Southern Oscillation variability indicate that present climate teleconnections between the tropical Pacific Ocean and the western Antarctic Peninsula strengthened late in the Holocene epoch. We conclude that during the Holocene, Southern Ocean temperatures at the western Antarctic Peninsula margin were tied to changes in the position of the westerlies, which have a critical role in global carbon cycling.

  3. Controls and variability of solute and sedimentary fluxes in Antarctic and sub-Antarctic Environments

    NASA Astrophysics Data System (ADS)

    Zwolinski, Zbigniew

    2015-04-01

    The currently prepared SEDIBUD Book on "Source-to-Sink Fluxes in Undisturbed Cold Environments" (edited by Achim A. Beylich, John C. Dixon and Zbigniew Zwolinski and published by Cambridge University Press) is summarizing and synthesizing the achievements of the International Association of Geomorphologists` (I.A.G./A.I.G.) Working Group SEDIBUD (Sediment Budgets in Cold Environments), which has been active since 2005 (http://www.geomorph.org/wg/wgsb.html). The book comprises five parts. One of them is part about sub-Antarctic and Antarctic Environments. This part "Sub-Antarctic and Antarctic Environments" describes two different environments, namely oceanic and continental ones. Each part contains results of research on environmental drivers and rates of contemporary solute and sedimentary fluxes in selected sites. Apart from describing the environmental conditions of the whole continent of Antarctica and sub-Antarctic islands (Zb.Zwolinski, M.Kejna, A.N.Lastochkin, A.Zhirov, S.Boltramovich) this part of the book characterizes terrestrial polar oases free from multi-year ice and snow covers (Zb.Zwolinski). The detailed results of geoecological and sedimentological research come from different parts of Antarctica. Antarctic continental shelf (E.Isla) is an example of sub-Antarctic oceanic environment. South Shetlands, especially King George Island (Zb.Zwolinski, M.Kejna, G.Rachlewicz, I.Sobota, J.Szpikowski), is an example of sub-Antarctic terrestrial environment. Antarctic Peninsula (G.Vieira, M.Francelino, J.C.Fernandes) and surroundings of McMurdo Dry Valleys (W.B.Lyons, K.A.Welch, J.Levy, A.Fountain, D.McKnight) are examples of Antarctic continental environments. The key goals of the Antarctic and sub-Antarctic book chapters are following: (i) identify the main environmental drivers and rates of contemporary solute and sedimentary fluxes, and (ii) model possible effects of projected climate change on solute and sedimentary fluxes in cold climate environments

  4. The Last Interglacial History of the Antarctic Ice sheet

    NASA Astrophysics Data System (ADS)

    Bradley, Sarah; Siddall, Mark; Milne, Glenn A.; Masson-Delmotte, Valerie; Wolff, Eric; Hindmarsh, Richard C. A.

    2014-05-01

    temperatures are estimated primarily using the difference in the δD peak in the LIG stable isotope ice core data relative to the records for the present interglacial; a feature which is referred to as the 'LIG overshoot'. Generally studies have attributed most of this signal to changes in the Antarctic climate [Masson-Delmotte et al., 2011]. However, a previously overlooked contribution is the influence of changes in surface elevation driven by changes in ice-loading history of the EAIS [Bradley et al., 2013]. We will show that introducing a relatively moderate reduction in the amount of thickening of the EAIS over the LIG, can generate a significant elevation driven δD signal at the EAIS ice core sites, and as such elevation effects can account for a significant fraction of the LIG overshoot. We will conclude that the potential contribution of this process must be considered when using the EAIS stable isotope ice core data to make estimated of the LIG surface temperature. Finally, we will provide estimates of the contribution of the AIS to both ESL and to the higher than observed relative sea level during the LIG. Bradley, S. L., M. Siddall, G. A. Milne, V. Masson-Delmotte, and E. Wolff (2012), Where might we find evidence of a Last Interglacial West Antarctic Ice Sheet collapse in Antarctic ice core records?, Global and Planetary Change, 88-89(0), 64-75. Bradley, S. L., M. Siddall, G. A. Milne, V. Masson-Delmotte, and E. Wolff (2013), Combining ice core records and ice sheet models to explore the evolution of the East Antarctic Ice sheet during the Last Interglacial period, Global and Planetary Change, 100, 278-290. Lang, N., and E. W. Wolff (2011), Interglacial and glacial variability from the last 800 ka in marine, ice and terrestrial archives, Clim. Past., 7(2), 361-380. Masson-Delmotte, V., et al. (2011), A comparison of the present and last interglacial periods in six Antarctic ice cores, Clim. Past., 7(2), 397-423.

  5. 76 FR 60933 - Antarctic Conservation Act Permit Applications

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-30

    ... From the Federal Register Online via the Government Publishing Office ] NATIONAL SCIENCE FOUNDATION Antarctic Conservation Act Permit Applications AGENCY: National Science Foundation. ACTION: Notice... to NSF pursuant to regulations issued under the Antarctic Conservation Act of 1978. DATES:...

  6. Large flux of iron from the Amery Ice Shelf marine ice to Prydz Bay, East Antarctica

    NASA Astrophysics Data System (ADS)

    Herraiz-Borreguero, L.; Lannuzel, D.; van der Merwe, P.; Treverrow, A.; Pedro, J. B.

    2016-08-01

    The Antarctic continental shelf supports a high level of marine primary productivity and is a globally important carbon dioxide (CO2) sink through the photosynthetic fixation of CO2 via the biological pump. Sustaining such high productivity requires a large supply of the essential micronutrient iron (Fe); however, the pathways for Fe delivery to these zones vary spatially and temporally. Our study is the first to report a previously unquantified source of concentrated bioavailable Fe to Antarctic surface waters. We hypothesize that Fe derived from subglacial processes is delivered to euphotic waters through the accretion (Fe storage) and subsequent melting (Fe release) of a marine-accreted layer of ice at the base of the Amery Ice Shelf (AIS). Using satellite-derived Chlorophyll-a data, we show that the soluble Fe supplied by the melting of the marine ice layer is an order of magnitude larger than the required Fe necessary to sustain the large annual phytoplankton bloom in Prydz Bay. Our finding of high concentrations of Fe in AIS marine ice and recent data on increasing rates of ice shelf basal melt in many of Antarctica's ice shelves should encourage further research into glacial and marine sediment transport beneath ice shelves and their sensitivity to current changes in basal melt. Currently, the distribution, volume, and Fe concentration of Antarctic marine ice is poorly constrained. This uncertainty, combined with variable forecasts of increased rates of ice shelf basal melt, limits our ability to predict future Fe supply to Antarctic coastal waters.

  7. Baseline concentrations of elements in the Antarctic macrolichen Umbilicaria decussata

    PubMed

    Bargagli; Sanchez-Hernandez; Monaci

    1999-02-01

    Total concentrations of major and trace elements were determined in samples of the epilithic lichen Umbilicaria decussata from 24 ice-free areas in coastal Victoria Land (Antarctica). Overall average concentrations of trace elements except Cd were the lowest ever reported for lichens of the genus Umbilicaria. Specifically, the mean level of Pb in lichens from granitic rocks (0.46 +/- 0.18 microg g(-1) dry wt) was more than four times lower than the lowest record in Arctic lichens. No impact of local human activities was detected, but the elemental composition of U. decussata was affected by entrapment of soil or rock dust particles and probably by uptake of soluble elements from substrate. Relationships between elements and their distribution patterns in the study area indicated that the marine environment is the main source of major ions and perhaps of Cd in lichens. Accumulation of P was detected in samples from coastal sites frequented by seabirds. Although the present results can be taken as baseline levels of major and trace elements in Antarctic U. decussata from substrates with very different geochemical features, further research is necessary to evaluate the relative element contribution from each substrate with respect to those from snow, marine aerosol, salt encrustations and guano. PMID:10901668

  8. Cardiovascular control in Antarctic fish

    NASA Astrophysics Data System (ADS)

    Egginton, Stuart; Campbell, Hamish; Davison, William

    2006-04-01

    The capacity for synthesis and plasma levels of stress hormones in species with a range of activity patterns suggest that depressed catecholamine synthesis is typical of notothenioid fishes regardless of life style, although they are able to release extensive stores under conditions of extreme trauma. Cortisol does not appear to be an important primary stress hormone in these species. In general, vascular reactivity shows a modest α and β adrenergic tonus, but with greater potency for cholinergic and serotonergic vasoconstrictor agonists, although a dominance of vasodilatation over vasoconstriction is observed in one species. Vasomotor control mechanisms appear to be primarily a consequence of evolutionary lineage rather than low environmental temperature, but the pattern may be modified according to functional demand. These and other data confirm the cardiovascular system is dominated by cholinergic control: the heart apparently lacks adrenergic innervation, but receives inhibitory parasympathetic input that regulates heart rate (HR) by setting a resting vagal tonus. Oxygen consumption (MO 2) determined at rest and varied via specific dynamic action, in intact fish and fish that had undergone bilateral sectioning of the vagus nerve, show that HR is a good predictor of MO 2, and that the major influence on HR is the degree of vagal tone—these fish work by removing the brake rather than applying the accelerator. However, whether these traits actually represent adaptation to the Antarctic environment or merely represent ancestral characteristics and their relative phylogenetic position is at present unclear.

  9. Ozone variability over Antarctic continent

    NASA Astrophysics Data System (ADS)

    Concepcion Parrondo, Mā; Yela, Margarita; Gil, Manuel; Ochoa, Hector

    2010-05-01

    Ozonesoundings data from Antarctic Belgrano Station (78°S, 34°W) carried out since 1999 are used to analyze the inter-annual variability of ozone in the troposphere and lower stratosphere. Tropospheric ozone has been calculated integrating the ozone content from the ground up to the ozone tropopause for each ozonesounding using Betan et al. [1996], definition. The annual cycle of the tropospheric ozone values shows an increase from summer to winter months. In August, tropospheric ozone almost doubles the values in February. Dynamical and chemical factors responsible of this behaviour are presented. Ozone loss rate during September in the lower stratosphere for the eleven year record is presented. The highest inter-annual ozone variability in observed during November and December in the lower stratosphere (12-27 km). Minimum ozone values concentration in the 20-27 km layer are found in November 2008. Mean 2008 December 12-20 km partial column remained below 40 DU, lower by 35% than the 2000-2005 mean. We present the relationship between the potential vorticity, timing of the vortex breakup date, the strength of the vortex and ozone concentration at different levels in an attempt to find dynamical features responsible for the observed behavior.

  10. Adult antarctic krill feeding at abyssal depths.

    PubMed

    Clarke, Andrew; Tyler, Paul A

    2008-02-26

    Antarctic krill (Euphausia superba) is a large euphausiid, widely distributed within the Southern Ocean [1], and a key species in the Antarctic food web [2]. The Discovery Investigations in the early 20(th) century, coupled with subsequent work with both nets and echosounders, indicated that the bulk of the population of postlarval krill is typically confined to the top 150 m of the water column [1, 3, 4]. Here, we report for the first time the existence of significant numbers of Antarctic krill feeding actively at abyssal depths in the Southern Ocean. Biological observations from the deep-water remotely operated vehicle Isis in the austral summer of 2006/07 have revealed the presence of adult krill (Euphausia superba Dana), including gravid females, at unprecedented depths in Marguerite Bay, western Antarctic Peninsula. Adult krill were found close to the seabed at all depths but were absent from fjords close inshore. At all locations where krill were detected they were seen to be actively feeding, and at many locations there were exuviae (cast molts). These observations revise significantly our understanding of the depth distribution and ecology of Antarctic krill, a central organism in the Southern Ocean ecosystem.

  11. A Maturing Tephra Record in the West Antarctic Ice Sheet

    NASA Astrophysics Data System (ADS)

    Dunbar, N. W.; Kurbatov, A.; McIntosh, W. C.

    2011-12-01

    Tephra layers found in many Antarctic ice cores range from sub-centimeter thick, visible layers to cryptotephra consisting of sparse, fine-grained (<10 micron) glass particles. Location of tephra particles has improved with advances in methods of detecting cryptotephra in ice cores. Identification of tephra layers traditionally relied on visible detection or association with sulfate aerosols, but is now supplemented by downhole optical logging (Bay et al., 2001). Improved analytical techniques for glass characterization, such as high quality quantitative electron microprobe analysis, and more complete information on source eruptions has facilitated identification of tephra horizons in ice cores. Two deep ice cores drilled in West Antarctica (Siple Dome and WAIS Divide) contain rich tephra records, with the former containing 37 tephra layers and the latter containing several hundred distinct, visible layers, many of which are likely to be tephra. Most of the tephra layers with strong correlations to sources are derived from Antarctic volcanoes, many from two large West Antarctic stratovolcanoes Mt. Berlin and Mt. Takahe, tephra from which have also been recognized in the marine record (Hillenbrand et al., 1988). A well-defined ash layer is found at a depth of between 190.37-190.39 m depth in the WAIS Divide core, containing 20 um ash shards that are chemically correlated to the the Pleaides volcanoes, in northern Victoria Land. This tephra layer correlates to one found in a Siple Dome (B) ice core (97.2 to 97.7 m depth) and in the Taylor Dome ice core (79.2 m depth). Deeper parts of the WAIS Divide ice core correspond to a time interval of abundant regional volcanism, represented by the large number of visible dust bands and cloudy layers in the core (A. Orsi, pers. comm., 2010). A distinct "visible brown layer" at a depth of 1586.363 m. (8.279 Ky BP preliminary age) is very likely to be from a major eruption of the West Antarctic volcano Mt. Takahe (8.2±5

  12. 45 CFR 670.9 - Antarctic Conservation Act enforcement exception.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... out by an Antarctic Conservation Act Enforcement Officer (designated pursuant to 45 CFR 672.3) if... 45 Public Welfare 3 2011-10-01 2011-10-01 false Antarctic Conservation Act enforcement exception... FOUNDATION CONSERVATION OF ANTARCTIC ANIMALS AND PLANTS Prohibited Acts, Exceptions § 670.9...

  13. 45 CFR 670.9 - Antarctic Conservation Act enforcement exception.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... out by an Antarctic Conservation Act Enforcement Officer (designated pursuant to 45 CFR 672.3) if... 45 Public Welfare 3 2012-10-01 2012-10-01 false Antarctic Conservation Act enforcement exception... FOUNDATION CONSERVATION OF ANTARCTIC ANIMALS AND PLANTS Prohibited Acts, Exceptions § 670.9...

  14. 45 CFR 670.9 - Antarctic Conservation Act enforcement exception.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... out by an Antarctic Conservation Act Enforcement Officer (designated pursuant to 45 CFR 672.3) if... 45 Public Welfare 3 2014-10-01 2014-10-01 false Antarctic Conservation Act enforcement exception... FOUNDATION CONSERVATION OF ANTARCTIC ANIMALS AND PLANTS Prohibited Acts, Exceptions § 670.9...

  15. 45 CFR 670.9 - Antarctic Conservation Act enforcement exception.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... out by an Antarctic Conservation Act Enforcement Officer (designated pursuant to 45 CFR 672.3) if... 45 Public Welfare 3 2013-10-01 2013-10-01 false Antarctic Conservation Act enforcement exception... FOUNDATION CONSERVATION OF ANTARCTIC ANIMALS AND PLANTS Prohibited Acts, Exceptions § 670.9...

  16. 45 CFR 670.9 - Antarctic Conservation Act enforcement exception.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... out by an Antarctic Conservation Act Enforcement Officer (designated pursuant to 45 CFR 672.3) if... 45 Public Welfare 3 2010-10-01 2010-10-01 false Antarctic Conservation Act enforcement exception... FOUNDATION CONSERVATION OF ANTARCTIC ANIMALS AND PLANTS Prohibited Acts, Exceptions § 670.9...

  17. 77 FR 31044 - Permits Issued Under the Antarctic Conservation Act

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-24

    ... Permits Issued Under the Antarctic Conservation Act AGENCY: National Science Foundation. ACTION: Notice of permits issued under the Antarctic Conservation of 1978, Public Law 95-541. SUMMARY: The National Science Foundation (NSF) is required to publish notice of permits issued under the Antarctic Conservation Act of...

  18. Pressure-induced alteration in effects of high CO2 on marine bacteria

    NASA Astrophysics Data System (ADS)

    Yamada, N.; Tsukasaki, A.; Tsurushima, N.; Suzumura, M.

    2013-12-01

    Carbon capture and storage (CCS) is a key mitigation technology to reduce the release of carbon dioxide (CO2) into the atmosphere. Current CCS research is dominated by improvements of the efficiency of the capturing, transport or storage of CO2. Also, it is important to estimate potential impacts on marine environments related to potential CO2 leakage. It has been demonstrated that seawater acidification effects on marine community structure and food chains. Bacteria are the basis of marine microbial food web and responsible for a significant part of marine biogeochemical cycles in both water column and bottom sediments. We used a high pressure incubation system which is composed of an HPLC pump and stainless-steel pressure vessels. The system could maintain stably the pressure up to 30 MPa. Using the system, we investigated the effects of high CO2 concentration on a deep-sea bacterium, Pseudoalteromonas sp., isolated from the western North Pacific Ocean. The isolate was incubated in acidified seawaters at various CO2 concentrations under simulated pressure conditions between 0.1 MPa and 30 MPa. We determined bacterial growth rate and live/dead cell viability. It was found that both CO2 concentration and pressure influenced substantially the growth rate of the isolate. In order to assess potential effects of leaked CO2 on microbial assemblages in marine environments, it was suggested that hydraulic pressure is one essential variable to be considered.

  19. Isolation and identification of a bacterium from marine shrimp digestive tract: A new degrader of starch and protein

    NASA Astrophysics Data System (ADS)

    Li, Jiqiu; Tan, Beiping; Mai, Kangsen

    2011-09-01

    It is a practical approach to select candidate probiotic bacterial stains on the basis of their special traits. Production of digestive enzyme was used as a trait to select a candidate probiotic bacterial strain in this study. In order to select a bacterium with the ability to degrade both starch and protein, an ideal bacterial strain STE was isolated from marine shrimp ( Litopenaeus vannamei) intestines by using multiple selective media. The selected isolate STE was identified on the basis of its morphological, physiological, and biochemical characteristics as well as molecular analyses. Results of degradation experiments confirmed the ability of the selected isolate to degrade both starch and casein. The isolate STE was aerobic, Gram-negative, rod-shaped, motile and non-spore-forming, and had catalase and oxidase activities but no glucose fermentation activity. Among the tested carbon/nitrogen sources, only Tween40, alanyl-glycine, aspartyl-glycine, and glycyl-l-glutamic acid were utilized by the isolate STE. Results of homology comparison analyses of the 16S rDNA sequences showed that the isolate STE had a high similarity to several Pseudoalteromonas species and, in the phylogenetic tree, grouped with P. ruthenica with maximum bootstrap support (100%). In conclusion, the isolate STE was characterized as a novel strain belonging to the genus Pseudoalteromonas. This study provides a further example of a probiotic bacterial strain with specific characteristics isolated from the host gastrointestinal tract.

  20. Disturbance, colonization and development of Antarctic benthic communities.

    PubMed

    Barnes, David K A; Conlan, Kathleen E

    2007-01-29

    A decade has yielded much progress in understanding polar disturbance and community recovery-mainly through quantifying ice scour rates, other disturbance levels, larval abundance and diversity, colonization rates and response of benthos to predicted climate change. The continental shelf around Antarctica is clearly subject to massive disturbance, but remarkably across so many scales. In summer, millions of icebergs from sizes smaller than cars to larger than countries ground out and gouge the sea floor and crush the benthic communities there, while the highest wind speeds create the highest waves to pound the coast. In winter, the calm associated with the sea surface freezing creates the clearest marine water in the world. But in winter, an ice foot encases coastal life and anchor ice rips benthos from the sea floor. Over tens and hundreds of thousands of years, glaciations have done the same on continental scales-ice sheets have bulldozed the seabed and the zoobenthos to edge of shelves. We detail and rank modern disturbance levels (from most to least): ice; asteroid impacts; sediment instability; wind/wave action; pollution; UV irradiation; volcanism; trawling; non-indigenous species; freshwater inundation; and temperature stress. Benthic organisms have had to recolonize local scourings and continental shelves repeatedly, yet a decade of studies have demonstrated that they have (compared with lower latitudes) slow tempos of reproduction, colonization and growth. Despite massive disturbance levels and slow recolonization potential, the Antarctic shelf has a much richer fauna than would be expected for its area. Now, West Antarctica is among the fastest warming regions and its organisms face new rapid changes. In the next century, temperature stress and non-indigenous species will drastically rise to become dominant disturbances to the Antarctic life. Here, we describe the potential for benthic organisms to respond to disturbance, focusing particularly on what we

  1. Disturbance, colonization and development of Antarctic benthic communities

    PubMed Central

    Barnes, David K.A; Conlan, Kathleen E

    2006-01-01

    A decade has yielded much progress in understanding polar disturbance and community recovery—mainly through quantifying ice scour rates, other disturbance levels, larval abundance and diversity, colonization rates and response of benthos to predicted climate change. The continental shelf around Antarctica is clearly subject to massive disturbance, but remarkably across so many scales. In summer, millions of icebergs from sizes smaller than cars to larger than countries ground out and gouge the sea floor and crush the benthic communities there, while the highest wind speeds create the highest waves to pound the coast. In winter, the calm associated with the sea surface freezing creates the clearest marine water in the world. But in winter, an ice foot encases coastal life and anchor ice rips benthos from the sea floor. Over tens and hundreds of thousands of years, glaciations have done the same on continental scales—ice sheets have bulldozed the seabed and the zoobenthos to edge of shelves. We detail and rank modern disturbance levels (from most to least): ice; asteroid impacts; sediment instability; wind/wave action; pollution; UV irradiation; volcanism; trawling; non-indigenous species; freshwater inundation; and temperature stress. Benthic organisms have had to recolonize local scourings and continental shelves repeatedly, yet a decade of studies have demonstrated that they have (compared with lower latitudes) slow tempos of reproduction, colonization and growth. Despite massive disturbance levels and slow recolonization potential, the Antarctic shelf has a much richer fauna than would be expected for its area. Now, West Antarctica is among the fastest warming regions and its organisms face new rapid changes. In the next century, temperature stress and non-indigenous species will drastically rise to become dominant disturbances to the Antarctic life. Here, we describe the potential for benthic organisms to respond to disturbance, focusing particularly on what

  2. Antarctic “quiet” site stirs debate

    NASA Astrophysics Data System (ADS)

    Simarski, Lynn Teo

    Geophysicists from the United States and New Zealand plan to meet in the coming months to assess the electromagnetic pollution of an Antarctic site especially designated for research. U.S. scientists charge that a satellite Earth station erected apparently inside the preserve by New Zealand's Telecom company could interfere with experiments on the ionosphere and magnetosphere (Eos, April 28, 1992). The Site of Special Scientific Interest at Arrival Heights, the only Antarctic preserve specifically for physical science, is located near the U.S. McMurdo and New Zealand Scott bases.Debate over the Telecom facility inter-twines diplomatic and scientific issues. One question is whether the station violates the Antarctic treaty. Secondly, does it actually impair research at the site—or could it harm future experiments? To deepen the imbroglio, those involved from both nations say that transmissions from sources off-site also interfere with research—raising doubts about how pristine the site really is.

  3. NSF's role in Antarctic environment scrutinized

    NASA Astrophysics Data System (ADS)

    Bush, Susan

    In the last few years, the National Science Foundation has come under criticism by environmental groups for inadequate stewardship in the U.S. Antarctic Program's environmental issues. Since 1978, NSF was given full responsibility, by Executive Order, for budgeting and managing the entire U.S. national program in Antarctica, including logistics support. NSF has also been responsible for the compliance of the U.S. Antarctic Program with environmental protection measures agreed to by the Antarctic Treaty nations. Specifically under fire by environmentalists have been NSF's maintenance of a land-fill, open-air burning of solid waste, and the removal of toxic substances. According to Peter E. Wilkniss, director of the Division of Polar Programs at NSF, open burning is no longer taking place and will not be allowed in the future.

  4. When Will the Antarctic Ozone Hole Recover?

    NASA Technical Reports Server (NTRS)

    Newman, Paul A.; Nash, Eric R.; Kawa, S. Randolph; Montzka, Stephen A.; Schauffler, Sue

    2006-01-01

    The Antarctic ozone hole demonstrates large-scale, man-made affects on our atmosphere. Surface observations now show that human produced ozone depleting substances (ODSs) are declining. The ozone hole should soon start to diminish because of this decline. Herein we demonstrate an ozone hole parametric model. This model is based upon: 1) a new algorithm for estimating C1 and Br levels over Antarctica and 2) late-spring Antarctic stratospheric temperatures. This parametric model explains 95% of the ozone hole area s variance. We use future ODS levels to predict ozone hole recovery. Full recovery to 1980 levels will occur in approximately 2068. The ozone hole area will very slowly decline over the next 2 decades. Detection of a statistically significant decrease of area will not occur until approximately 2024. We further show that nominal Antarctic stratospheric greenhouse gas forced temperature change should have a small impact on the ozone hole.

  5. When Will the Antarctic Ozone Hole Recover?

    NASA Technical Reports Server (NTRS)

    Newman, Paul A.

    2006-01-01

    The Antarctic ozone hole demonstrates large-scale, man-made affects on our atmosphere. Surface observations now show that human produced ozone depleting substances (ODSs) are declining. The ozone hole should soon start to diminish because of this decline. In this talk we will demonstrate an ozone hole parametric model. This model is based upon: 1) a new algorithm for estimating 61 and Br levels over Antarctica and 2) late-spring Antarctic stratospheric temperatures. This parametric model explains 95% of the ozone hole area's variance. We use future ODS levels to predict ozone hole recovery. Full recovery to 1980 levels will occur in approximately 2068. The ozone hole area will very slowly decline over the next 2 decades. Detection of a statistically significant decrease of area will not occur until approximately 2024. We further show that nominal Antarctic stratospheric greenhouse gas forced temperature change should have a small impact on the ozone hole.

  6. Solar flare irradiation records in Antarctic meteorites

    NASA Technical Reports Server (NTRS)

    Goswami, J. N.

    1981-01-01

    The observation of tracks from solar flare heavy nuclei in Antarctic meteorite samples is reported. In an analysis of nuclear track densities in eight L and H chondrites of low metamorphic grade, it was found that two interior specimens of sample 77216, an L-3 chondrite, contain olivine grains with track densities much higher than the average track densities, indicating precompaction irradiation by solar flares in different shielding conditions. Preliminary data from mass spectroscopic analyses show a large excess of noble gases, with a Ne-20/Ne-22 ratio of greater than or equal to 10, indicating the presence of solar-type noble gas. Results of track density measurements in the other Antarctic meteorites range from 10,000 to 4,000,000/sq cm, which is within the range observed in non-Antarctic L-group meteorites

  7. The Antarctic cryptoendolithic ecosystem - Relevance to exobiology

    NASA Technical Reports Server (NTRS)

    Friedmann, E. I.; Ocampo-Friedmann, R.

    1984-01-01

    Cryptoendolithic microorganisms in the Antarctic desert live inside porous sandstone rocks, protected by a thin rock crust. While the rock surface is abiotic, the microclimate inside the rock is comparatively mild. These organisms may have descended from early, pre-glaciation Antarctic life forms and thus may represent the last outpost of life in a gradually deteriorating environment. Assuming that life once arose on Mars, it is conceivable that, following the loss of water, the last of surviving organisms withdrew to similar insulated microenvironments. Because such microscopic pockets have little connection with the outside environment, their detection may be difficult. The chances that the Viking lander could sample cryptoendolithic microorganisms in the Antarctic desert would be infinitesimal.

  8. Sublgacial Antarctic Lake Environments (SALE)

    NASA Astrophysics Data System (ADS)

    Kennicutt, M. C.; Bell, R. E.; Priscu, J. C.

    2004-12-01

    Subglacial Antarctic lake environments are emerging as one of the new frontiers targeted for exploration during the IPY 2007-2009. Several campaigns by various nations are in the early stages of planning and implementation with timelines that will coincide with the IPY. The ambitious interdisciplinary objectives will best be realized by multiple exploration programs investigating diverse subglacial environments continent-wide over the next decade or more. A concerted, multi-target approach wil be taken to advance our understanding of the range of possible lake evolutionary histories; the character of the physical, chemical, and biological niches; the interconnectivity of subglacial lake environments; the coupling of the ice sheet, climate and the evolution of life under the ice; the tectonic settings; and the interplay of biogeochemical cycles. Research and exploration programs spanning the continent will investigate subglacial lake environments of differing ages, evolutionary histories, and biogeochemical settings. The combined efforts will provide a holistic view of these environments over millions of years and under changing climatic conditions. The IPY will provide an opportunity for an intense period of initial exploration that will advance scientific discoveries in glaciology, biogeochemistry, paleoclimate, biology, geology and tectonics, and ecology. While early discoveries and exciting findings are expected during the IPY 2007-2009, a long term sustained program of research and exploration will continue far beyond the IPY. Within the five year period that spans the IPY, specific accomplishments will be targeted, accelerating the research agenda and setting a framework for follow-on studies. Four phases of exploration and discovery are envisioned.

  9. The Australian Antarctic lidar facility

    SciTech Connect

    Klekociuk, A.R.; Morris, R.J.; Yates, P.; Fleming, A.; Murphy, D.J.; Greet, P.A. |; Argall, P.S. |; Vincent, R.A.; Reid, I.M.

    1994-12-31

    A high spectral resolution lidar, under development by the Australian Antarctic Division and the University of Adelaide, is described. This instrument will be stationed at Davis, Antarctica (68.6{degree}S, 78.0{degree}E) from early 1996 for the long-term measurement of atmospheric parameters as a function of altitude from the lower stratosphere to the mesopause. The siting of the lidar will allow for data comparison with existing optical, radar and balloon-borne atmospheric studies. Research utilizing the multi-instrument database will be aimed at assessing climatic variability and coupling processes throughout the atmosphere. The lidar transmitter consists of a commercial injection-seeded pulsed ND:YAG laser coupled to a altazimuth mounted Cassegrain telescope with a 1 meter diameter primary mirror. The laser emits at a wavelength of 532 nm with an average power of 30 W. The telescope also serves as the collecting optics for the receiving system. The lidar is switched between transmit and receive modes by a high speed rotating shutter system. The detection system consists of a dual scanning Fabry Perot Spectrometer (FPS) followed by a cooled photomultiplier operated in `photon counting` mode. The received signal is integrated as a function of equivalent range over a bandpass that may be either fixed or scanned in the wavelength domain. Performance simulations for the fixed bandpass operating mode are discussed. These indicate that useful measurements of density and inferred temperature should be achievable for the mesopause region, particularly at night and during twilight. In addition, detection of clouds in the mesosphere during the day appears feasible.

  10. Volatile trace elements in Antarctic ureilites

    NASA Astrophysics Data System (ADS)

    Wang, M.-S.; Lipschutz, M. E.

    1995-05-01

    We report data for Ag, Au, Bi, Cd, Co, Cs, Ga, In, Rb, Sb, Se, Te, Tl, U and Zn in 15 different Antarctic ureilites. Contents of these mainly volatile trace elements in Antarctic ureilites are roughly comparable to those in the four known falls. Trends exhibited by these data apparently reflect geochemical fractionations in parental magma(s), which were closed to loss of vapor. Subsequent events (e.g., shock and crystallization) do not seem to have affected contents of these elements.

  11. Antarctic Meteorite Newsletter, Volume 8, Number 2

    NASA Technical Reports Server (NTRS)

    1985-01-01

    Requests for samples are welcomed from research scientists of all countries, regardless of their current state of funding for meteorite studies. All sample requests will be reviewed by the Meteorite Working Group (MWG), a peer-review committee that guides the collection, curation, allocation, and distribution of the U.S. Antarctic meteorites. Issurance of samples does not imply a commitment by any agency to fund the proposed research. Requests for financial support must be submitted separately to the appropriate funding agencies. As a matter of policy, U.S. Antarctic meteorites are the property of the National Science Foundation and all allocations are subject to recall.

  12. Antarctic ozone - Meteoric control of HNO3

    NASA Astrophysics Data System (ADS)

    Prather, Michael J.; Rodriguez, Jose M.

    1988-01-01

    Atmospheric circulation leads to an accumulation of debris from meteors in the Antarctic stratosphere at the beginning of austral spring. The major component of meteoric material is alkaline, comprised predominantly of the oxides of magnesium and iron. These metals may neutralize the natural acidity of stratospheric aerosols, remove nitric acid from the gas phase, and bond it as metal nitrates in the aerosol phase. Removal of nitric acid vapor has been previously shown to be a critical link in the photochemical depletion of ozone in the Antarctic spring, by allowing for increased catalytic loss from chlorine and bromine.

  13. Mysterious iodine-overabundance in Antarctic meteorites

    NASA Technical Reports Server (NTRS)

    Dreibus, G.; Waenke, H.; Schultz, L.

    1986-01-01

    Halogen as well as other trace element concentrations in meteorite finds can be influenced by alteration processes on the Earth's surface. The discovery of Antarctic meteorites offered the opportunity to study meteorites which were kept in one of the most sterile environment of the Earth. Halogen determination in Antartic meteorites was compared with non-Antarctic meteorites. No correlation was found between iodine concentration and the weathering index, or terrestrial age. The halogen measurements indicate a contaminating phase rich in iodine and also containing chlorine. Possible sources for this contamination are discussed.

  14. Constraining the Antarctic contribution to global sea-level change: ANDRILL and beyond

    NASA Astrophysics Data System (ADS)

    Naish, Timothy

    2016-04-01

    Observations, models and paleoclimate reconstructions suggest that Antarctica's marine-based ice sheets behave in an unstable manner with episodes of rapid retreat in response to warming climate. Understanding the processes involved in this "marine ice sheet instability" is key for improving estimates of Antarctic ice sheet contribution to future sea-level rise. Another motivating factor is that far-field sea-level reconstructions and ice sheet models imply global mean sea level (GMSL) was up to 20m and 10m higher, respectively, compared with present day, during the interglacials of the warm Pliocene (~4-3Ma) and Late Pleistocene (at ~400ka and 125ka). This was when atmospheric CO2 was between 280 and 400ppm and global average surface temperatures were 1 to 3°C warmer, suggesting polar ice sheets are highly sensitive to relatively modest increases in climate forcing. Such magnitudes of GMSL rise not only require near complete melt of the Greenland Ice Sheet and the West Antarctic Ice Sheet, but a substantial retreat of marine-based sectors of East Antarctic Ice Sheet. Recent geological drilling initiatives on the continental margin of Antarctica from both ship- (e.g. IODP; International Ocean Discovery Program) and ice-based (e.g. ANDRILL/Antarctic Geological Drilling) platforms have provided evidence supporting retreat of marine-based ice. However, without direct access through the ice sheet to archives preserved within sub-glacial sedimentary basins, the volume and extent of ice sheet retreat during past interglacials cannot be directly constrained. Sediment cores have been successfully recovered from beneath ice shelves by the ANDRILL Program and ice streams by the WISSARD (Whillans Ice Stream Sub-glacial Access Research Drilling) Project. Together with the potential of the new RAID (Rapid Access Ice Drill) initiative, these demonstrate the technological feasibility of accessing the subglacial bed and deeper sedimentary archives. In this talk I will outline the

  15. Orbital and millennial Antarctic climate variability over the past 800,000 years.

    PubMed

    Jouzel, J; Masson-Delmotte, V; Cattani, O; Dreyfus, G; Falourd, S; Hoffmann, G; Minster, B; Nouet, J; Barnola, J M; Chappellaz, J; Fischer, H; Gallet, J C; Johnsen, S; Leuenberger, M; Loulergue, L; Luethi, D; Oerter, H; Parrenin, F; Raisbeck, G; Raynaud, D; Schilt, A; Schwander, J; Selmo, E; Souchez, R; Spahni, R; Stauffer, B; Steffensen, J P; Stenni, B; Stocker, T F; Tison, J L; Werner, M; Wolff, E W

    2007-08-10

    A high-resolution deuterium profile is now available along the entire European Project for Ice Coring in Antarctica Dome C ice core, extending this climate record back to marine isotope stage 20.2, approximately 800,000 years ago. Experiments performed with an atmospheric general circulation model including water isotopes support its temperature interpretation. We assessed the general correspondence between Dansgaard-Oeschger events and their smoothed Antarctic counterparts for this Dome C record, which reveals the presence of such features with similar amplitudes during previous glacial periods. We suggest that the interplay between obliquity and precession accounts for the variable intensity of interglacial periods in ice core records.

  16. Settling fluxes of diatoms to the interior of the Antarctic circumpolar current along 170 °W

    NASA Astrophysics Data System (ADS)

    Grigorov, Ivo; Rigual-Hernandez, Andrés S.; Honjo, Susumu; Kemp, Alan E. S.; Armand, Leanne K.

    2014-11-01

    An array of four sediment trap moorings recorded the particulate flux across the Antarctic Circumpolar Current (ACC) at 170 °W, between November 1996 and January 1998, as part of the US JGOFS-Antarctic Environment and Southern Ocean Process Study (AESOPS) program. The trap locations represent sampling within the Polar Frontal Zone, the Antarctic Polar Front, the Antarctic Zone and the Southern Antarctic Zone. Here we report observations from 1000 m below the sea-surface compared to seafloor and surface water distributions. Sub-sample splits from each trap were obtained and total diatom flux and species composition were determined. The diatom fluxes were quantified using both a dilution and a ‘spike' method to allow for the rapid repeatability of measurements. Diatom flux was found to be highly seasonal across the ACC particularly at higher latitudes. Marine snow aggregates of intact diatom cells and chains were the major components of the biogenic flux. Siliceous particle size was noted to decrease with increasing latitude, which could be aligned with a shift of the diatom assemblage to small-size species/sea-ice affiliated species. A ‘double-structured' diatom flux was recorded at the location of the Antarctic Polar Front trap, with a shift in the diatom assemblage from larger to smaller diatoms in the second flux episode. The sediment trap assemblage shows deviations from the surface water assemblage, while surface sediment samples indicate that significant dissolution occurs after 1000 m and at the sediment-water interface. Estimation of diatom biovolumes across the ACC shows that large diatoms have the potential to greatly impact biogenic fluxes to the ocean interior despite their low fluxes. Small species of the genus Fragilariopsis could potentially export as much Corg as Fragilariopsis kerguelensis near the retreating ice edge. However, their low abundance in the surface sediments also suggests that these diatoms are a shallow export species.

  17. Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities.

    PubMed

    Cook, M A; Osborn, A M; Bettandorff, J; Sobecky, P A

    2001-08-01

    Six functional replication origins (repGA14, repGA33, repGA70, repSD41, repSD164 and repSD172), obtained from endogenously isolated, broad-host-range (BHR) marine plasmids ranging in size from 5 to 60 kb, were used to determine plasmid occurrence in three coastal marine sediment sites (in California, Georgia and South Carolina, USA). The plasmid-specific replicons were isolated from plasmid-bearing marine sediment bacteria belonging to the alpha and gamma subclasses of the Proteobacteria. The plasmid sources of the endogenous replicons were considered to be cryptic due to a lack of identifiable phenotypic traits. The putative Rep proteins from a number of these replicons showed similarity to replicons of two recognized families: RCR group III (repSD164) and the FIA family of theta group A (repSD41, repSD121, repGA33 and repGA14). Plasmids isolated from marine bacteria belonging to the genera Pseudoalteromonas, Shewanella and Vibrio cultivated from geographically different coastal sites exhibited homology to two of the marine plasmid replicons, repSD41 and repGA70, obtained from a Vibrio sp. The repGA33 plasmid origin, obtained from a Shewanella sp. isolated from coastal Georgia, was detected in 7% of the Georgia marine sediment Shewanella sp. isolates. Microbial community DNA extracted from marine sediments was also screened for the presence of the plasmid replication sequences. Community DNA samples amplified by PCR yielded a positive signal for the repSD172 and repGA14 replication sequences. The replication origin of BHR plasmid RK2 (IncP) was also detected in marine Vibrio sp. and microbial community DNA extracted from the three coastal sites. These findings provide molecular evidence that marine sediment bacteria harbour an untapped population of BHR plasmids.

  18. Fermentation Technologies for the Optimization of Marine Microbial Exopolysaccharide Production

    PubMed Central

    Finore, Ilaria; Di Donato, Paola; Mastascusa, Vincenza; Nicolaus, Barbara; Poli, Annarita

    2014-01-01

    In the last decades, research has focused on the capabilities of microbes to secrete exopolysaccharides (EPS), because these polymers differ from the commercial ones derived essentially from plants or algae in their numerous valuable qualities. These biopolymers have emerged as new polymeric materials with novel and unique physical characteristics that have found extensive applications. In marine microorganisms the produced EPS provide an instrument to survive in adverse conditions: They are found to envelope the cells by allowing the entrapment of nutrients or the adhesion to solid substrates. Even if the processes of synthesis and release of exopolysaccharides request high-energy investments for the bacterium, these biopolymers permit resistance under extreme environmental conditions. Marine bacteria like Bacillus, Halomonas, Planococcus, Enterobacter, Alteromonas, Pseudoalteromonas, Vibrio, Rhodococcus, Zoogloea but also Archaea as Haloferax and Thermococcus are here described as EPS producers underlining biopolymer hyperproduction, related fermentation strategies including the effects of the chemical composition of the media, the physical parameters of the growth conditions and the genetic and predicted experimental design tools. PMID:24857960

  19. Proceedings of a workshop on Differences Between Antarctic and Non-Antarctic Meteorites

    NASA Technical Reports Server (NTRS)

    Koeberl, Christian (Editor); Cassidy, William A. (Editor)

    1989-01-01

    The known facts, together with new research results are reviewed, in order to examine apparent differences between the Antarctic and non-Antarctic populations. In view of the statistically significant number of Antarctic meteorites, and the existence of rare or previously unknown types of meteorites among the Antarctic meteorite collection, the question was really not so much whether there are differences, but to define which ones are significant and what their origin is. Two main causes for the possible differences have been suggested previously, namely differences in the meteorite parent populations and secondary effects (e.g., weathering). The workshop was structured to contain sessions on chemical, isotopic, petrological, and mineralogical studies of meteorites from the two collections; terrestrial age determinations; discussions on mass frequency distributions; relative abundances of meteorite types; and terrestrial meteorite flux rates and their possible changes with time.

  20. Orbitally induced oscillations in the East Antarctic ice sheet at the Oligocene/Miocene boundary

    NASA Astrophysics Data System (ADS)

    Naish, Tim R.; Woolfe, Ken J.; Barrett, Peter J.; Wilson, Gary S.; Atkins, Cliff; Bohaty, Steven M.; Bücker, Christian J.; Claps, Michele; Davey, Fred J.; Dunbar, Gavin B.; Dunn, Alistair G.; Fielding, Chris R.; Florindo, Fabio; Hannah, Michael J.; Harwood, David M.; Henrys, Stuart A.; Krissek, Lawrence A.; Lavelle, Mark; van der Meer, Jaap; McIntosh, William C.; Niessen, Frank; Passchier, Sandra; Powell, Ross D.; Roberts, Andrew P.; Sagnotti, Leonardo; Scherer, Reed P.; Strong, C. Percy; Talarico, Franco; Verosub, Kenneth L.; Villa, Giuliana; Watkins, David K.; Webb, Peter-N.; Wonik, Thomas

    2001-10-01

    Between 34 and 15million years (Myr) ago, when planetary temperatures were 3-4°C warmer than at present and atmospheric CO2 concentrations were twice as high as today, the Antarctic ice sheets may have been unstable. Oxygen isotope records from deep-sea sediment cores suggest that during this time fluctuations in global temperatures and high-latitude continental ice volumes were influenced by orbital cycles. But it has hitherto not been possible to calibrate the inferred changes in ice volume with direct evidence for oscillations of the Antarctic ice sheets. Here we present sediment data from shallow marine cores in the western Ross Sea that exhibit well dated cyclic variations, and which link the extent of the East Antarctic ice sheet directly to orbital cycles during the Oligocene/Miocene transition (24.1-23.7Myr ago). Three rapidly deposited glacimarine sequences are constrained to a period of less than 450kyr by our age model, suggesting that orbital influences at the frequencies of obliquity (40kyr) and eccentricity (125kyr) controlled the oscillations of the ice margin at that time. An erosional hiatus covering 250kyr provides direct evidence for a major episode of global cooling and ice-sheet expansion about 23.7Myr ago, which had previously been inferred from oxygen isotope data (Mi1 event).

  1. Learning from the past: Antarctic Eemian ice sheet dynamics as an analogy for future warming.

    NASA Astrophysics Data System (ADS)

    Sutter, Johannes; Thoma, Malte; Grosfeld, Klaus; Gierz, Paul; Lohmann, Gerrit

    2015-04-01

    Facing considerable warming during this century the stability of the West Antarctic Ice Sheet is under increasing scrutiny. Recent observations suggest that the marine ice sheet instability of the WAIS has already started . We investigate the dynamic evolution of the Antarctic Ice Sheet during the last interglacial, forcing a state of the art 3D ice sheet model with Eemian boundary conditions. We elucidate the role of ocean warming and surface mass balance on the coupled ice sheet/shelf and grounding line dynamics. Special focus lies on an ice sheet modeling assessment of Antarctica's potential contribution to global sea level rise during the Eemian. The transient model runs are forced by time slice experiments of a fully coupled atmosphere-ocean global circulation model, as well as different sets of sea level and bedrock reconstructions. The model result show strong evidences for a severe ice-sheet retreat in West Antartica, leading to substantical contribution to global sea level from the Southern Hemisphere. Additionally we compare future warming scenarios of West Antarctic Ice Sheet dynamics to our paleo ice sheet modeling studies.

  2. Biodiversity change after climate-induced ice-shelf collapse in the Antarctic

    NASA Astrophysics Data System (ADS)

    Gutt, Julian; Barratt, Iain; Domack, Eugene; d'Udekem d'Acoz, Cédric; Dimmler, Werner; Grémare, Antoine; Heilmayer, Olaf; Isla, Enrique; Janussen, Dorte; Jorgensen, Elaina; Kock, Karl-Hermann; Sophia Lehnert, Linn; López-Gonzáles, Pablo; Langner, Stephanie; Linse, Katrin; Eugenia Manjón-Cabeza, Maria; Meißner, Meike; Montiel, Americo; Raes, Maarten; Robert, Henri; Rose, Armin; Sañé Schepisi, Elisabet; Saucède, Thomas; Scheidat, Meike; Schenke, Hans-Werner; Seiler, Jan; Smith, Craig

    2011-03-01

    The marine ecosystem on the eastern shelf of the Antarctic Peninsula was surveyed 5 and 12 years after the climate-induced collapse of the Larsen A and B ice shelves. An impoverished benthic fauna was discovered, that included deep-sea species presumed to be remnants from ice-covered conditions. The current structure of various ecosystem components appears to result from extremely different response rates to the change from an oligotrophic sub-ice-shelf ecosystem to a productive shelf ecosystem. Meiobenthic communities remained impoverished only inside the embayments. On local scales, macro- and mega-epibenthic diversity was generally low, with pioneer species and typical Antarctic megabenthic shelf species interspersed. Antarctic Minke whales and seals utilised the Larsen A/B area to feed on presumably newly established krill and pelagic fish biomass. Ecosystem impacts also extended well beyond the zone of ice-shelf collapse, with areas of high benthic disturbance resulting from scour by icebergs discharged from the Larsen embayments.

  3. A nutritional-toxicological assessment of Antarctic krill oil versus fish oil dietary supplements.

    PubMed

    Bengtson Nash, Susan M; Schlabach, Martin; Nichols, Peter D

    2014-08-28

    Fish oil dietary supplements and complementary medicines are pitched to play a role of increasing strategic importance in meeting daily requirements of essential nutrients, such as long-chain (≥ C20, LC) omega-3 polyunsaturated fatty acids and vitamin D. Recently a new product category, derived from Antarctic krill, has been launched on the omega-3 nutriceutical market. Antarctic krill oil is marketed as demonstrating a greater ease of absorption due to higher phospholipid content, as being sourced through sustainable fisheries and being free of toxins and pollutants; however, limited data is available on the latter component. Persistent Organic Pollutants (POP) encompass a range of toxic, man-made contaminants that accumulate preferentially in marine ecosystems and in the lipid reserves of organisms. Extraction and concentration of fish oils therefore represents an inherent nutritional-toxicological conflict. This study aimed to provide the first quantitative comparison of the nutritional (EPA and DHA) versus the toxicological profiles of Antarctic krill oil products, relative to various fish oil categories available on the Australian market. Krill oil products were found to adhere closely to EPA and DHA manufacturer specifications and overall were ranked as containing intermediate levels of POP contaminants when compared to the other products analysed. Monitoring of the pollutant content of fish and krill oil products will become increasingly important with expanding regulatory specifications for chemical thresholds.

  4. Ocean-atmosphere exchange of organic carbon and CO2 surrounding the Antarctic Peninsula

    NASA Astrophysics Data System (ADS)

    Ruiz-Halpern, S.; Calleja, M. Ll.; Dachs, J.; Del Vento, S.; Pastor, M.; Palmer, M.; Agustí, S.; Duarte, C. M.

    2014-05-01

    Exchangeable organic carbon (OC) dynamics and CO2 fluxes in the Antarctic Peninsula during austral summer were highly variable, but the region appeared to be a net sink for OC and nearly in balance for CO2. Surface exchangeable dissolved organic carbon (EDOC) measurements had a 43 ± 3 (standard error, hereafter SE) μmol C L-1 overall mean and represented around 66% of surface non-purgeable dissolved organic carbon (DOC) in Antarctic waters, while the mean concentration of the gaseous fraction of organic carbon (GOC H-1) was 46 ± 3 SE μmol C L-1. There was a tendency towards low fugacity of dissolved CO2 (fCO2-w) in waters with high chlorophyll a (Chl a) content and high fCO2-w in areas with high krill densities. However, such relationships were not found for EDOC. The depth profiles of EDOC were also quite variable and occasionally followed Chl a profiles. The diel cycles of EDOC showed two distinct peaks, in the middle of the day and the middle of the short austral dark period, concurrent with solar radiation maxima and krill night migration patterns. However, no evident diel pattern for GOC H-1 or CO2 was observed. The pool of exchangeable OC is an important and active compartment of the carbon budget surrounding the Antarctic Peninsula and adds to previous studies highlighting its importance in the redistribution of carbon in marine environments.

  5. Evidence of a shift in the cyclicity of Antarctic seabird dynamics linked to climate

    PubMed Central

    Jenouvrier, Stéphanie; Weimerskirch, Henri; Barbraud, Christophe; Park, Young-Hyang; Cazelles, Bernard

    2005-01-01

    Ecosystems and populations are known to be influenced not only by long-term climatic trends, but also by other short-term climatic modes, such as interannual and decadal-scale variabilities. Because interactions between climatic forcing, biotic and abiotic components of ecosystems are subtle and complex, analysis of long-term series of both biological and physical factors is essential to understanding these interactions. Here, we apply a wavelet analysis simultaneously to long-term datasets on the environment and on the populations and breeding success of three Antarctic seabirds (southern fulmar, snow petrel, emperor penguin) breeding in Terre Adélie, to study the effects of climate fluctuations on Antarctic marine ecosystems. We show that over the past 40 years, populations and demographic parameters of the three species fluctuate with a periodicity of 3–5 years that was also detected in sea-ice extent and the Southern Oscillation Index. Although the major periodicity of these interannual fluctuations is not common to different species and environmental variables, their cyclic characteristics reveal a significant change since 1980. Moreover, sliding-correlation analysis highlighted the relationships between environmental variables and the demography of the three species, with important change of correlation occurring between the end of the 1970s and the beginning of the 1980s. These results suggest that a regime shift has probably occurred during this period, significantly affecting the Antarctic ecosystem, but with contrasted effects on the three species. PMID:16024342

  6. Evidence of a shift in the cyclicity of Antarctic seabird dynamics linked to climate.

    PubMed

    Jenouvrier, Stéphanie; Weimerskirch, Henri; Barbraud, Christophe; Park, Young-Hyang; Cazelles, Bernard

    2005-05-01

    Ecosystems and populations are known to be influenced not only by long-term climatic trends, but also by other short-term climatic modes, such as interannual and decadal-scale variabilities. Because interactions between climatic forcing, biotic and abiotic components of ecosystems are subtle and complex, analysis of long-term series of both biological and physical factors is essential to understanding these interactions. Here, we apply a wavelet analysis simultaneously to long-term datasets on the environment and on the populations and breeding success of three Antarctic seabirds (southern fulmar, snow petrel, emperor penguin) breeding in Terre Adélie, to study the effects of climate fluctuations on Antarctic marine ecosystems. We show that over the past 40 years, populations and demographic parameters of the three species fluctuate with a periodicity of 3-5 years that was also detected in sea-ice extent and the Southern Oscillation Index. Although the major periodicity of these interannual fluctuations is not common to different species and environmental variables, their cyclic characteristics reveal a significant change since 1980. Moreover, sliding-correlation analysis highlighted the relationships between environmental variables and the demography of the three species, with important change of correlation occurring between the end of the 1970s and the beginning of the 1980s. These results suggest that a regime shift has probably occurred during this period, significantly affecting the Antarctic ecosystem, but with contrasted effects on the three species. PMID:16024342

  7. Evidence of a shift in the cyclicity of Antarctic seabird dynamics linked to climate.

    PubMed

    Jenouvrier, Stéphanie; Weimerskirch, Henri; Barbraud, Christophe; Park, Young-Hyang; Cazelles, Bernard

    2005-05-01

    Ecosystems and populations are known to be influenced not only by long-term climatic trends, but also by other short-term climatic modes, such as interannual and decadal-scale variabilities. Because interactions between climatic forcing, biotic and abiotic components of ecosystems are subtle and complex, analysis of long-term series of both biological and physical factors is essential to understanding these interactions. Here, we apply a wavelet analysis simultaneously to long-term datasets on the environment and on the populations and breeding success of three Antarctic seabirds (southern fulmar, snow petrel, emperor penguin) breeding in Terre Adélie, to study the effects of climate fluctuations on Antarctic marine ecosystems. We show that over the past 40 years, populations and demographic parameters of the three species fluctuate with a periodicity of 3-5 years that was also detected in sea-ice extent and the Southern Oscillation Index. Although the major periodicity of these interannual fluctuations is not common to different species and environmental variables, their cyclic characteristics reveal a significant change since 1980. Moreover, sliding-correlation analysis highlighted the relationships between environmental variables and the demography of the three species, with important change of correlation occurring between the end of the 1970s and the beginning of the 1980s. These results suggest that a regime shift has probably occurred during this period, significantly affecting the Antarctic ecosystem, but with contrasted effects on the three species.

  8. Evidence for elevated and spatially variable geothermal flux beneath the West Antarctic Ice Sheet.

    PubMed

    Schroeder, Dustin M; Blankenship, Donald D; Young, Duncan A; Quartini, Enrica

    2014-06-24

    Heterogeneous hydrologic, lithologic, and geologic basal boundary conditions can exert strong control on the evolution, stability, and sea level contribution of marine ice sheets. Geothermal flux is one of the most dynamically critical ice sheet boundary conditions but is extremely difficult to constrain at the scale required to understand and predict the behavior of rapidly changing glaciers. This lack of observational constraint on geothermal flux is particularly problematic for the glacier catchments of the West Antarctic Ice Sheet within the low topography of the West Antarctic Rift System where geothermal fluxes are expected to be high, heterogeneous, and possibly transient. We use airborne radar sounding data with a subglacial water routing model to estimate the distribution of basal melting and geothermal flux beneath Thwaites Glacier, West Antarctica. We show that the Thwaites Glacier catchment has a minimum average geothermal flux of ∼ 114 ± 10 mW/m(2) with areas of high flux exceeding 200 mW/m(2) consistent with hypothesized rift-associated magmatic migration and volcanism. These areas of highest geothermal flux include the westernmost tributary of Thwaites Glacier adjacent to the subaerial Mount Takahe volcano and the upper reaches of the central tributary near the West Antarctic Ice Sheet Divide ice core drilling site.

  9. Evidence for elevated and spatially variable geothermal flux beneath the West Antarctic Ice Sheet

    PubMed Central

    Schroeder, Dustin M.; Blankenship, Donald D.; Young, Duncan A.; Quartini, Enrica

    2014-01-01

    Heterogeneous hydrologic, lithologic, and geologic basal boundary conditions can exert strong control on the evolution, stability, and sea level contribution of marine ice sheets. Geothermal flux is one of the most dynamically critical ice sheet boundary conditions but is extremely difficult to constrain at the scale required to understand and predict the behavior of rapidly changing glaciers. This lack of observational constraint on geothermal flux is particularly problematic for the glacier catchments of the West Antarctic Ice Sheet within the low topography of the West Antarctic Rift System where geothermal fluxes are expected to be high, heterogeneous, and possibly transient. We use airborne radar sounding data with a subglacial water routing model to estimate the distribution of basal melting and geothermal flux beneath Thwaites Glacier, West Antarctica. We show that the Thwaites Glacier catchment has a minimum average geothermal flux of ∼114 ± 10 mW/m2 with areas of high flux exceeding 200 mW/m2 consistent with hypothesized rift-associated magmatic migration and volcanism. These areas of highest geothermal flux include the westernmost tributary of Thwaites Glacier adjacent to the subaerial Mount Takahe volcano and the upper reaches of the central tributary near the West Antarctic Ice Sheet Divide ice core drilling site. PMID:24927578

  10. A Nutritional-Toxicological Assessment of Antarctic Krill Oil versus Fish Oil Dietary Supplements

    PubMed Central

    Bengtson Nash, Susan M.; Schlabach, Martin; Nichols, Peter D.

    2014-01-01

    Fish oil dietary supplements and complementary medicines are pitched to play a role of increasing strategic importance in meeting daily requirements of essential nutrients, such as long-chain (≥C20, LC) omega-3 polyunsaturated fatty acids and vitamin D. Recently a new product category, derived from Antarctic krill, has been launched on the omega-3 nutriceutical market. Antarctic krill oil is marketed as demonstrating a greater ease of absorption due to higher phospholipid content, as being sourced through sustainable fisheries and being free of toxins and pollutants; however, limited data is available on the latter component. Persistent Organic Pollutants (POP) encompass a range of toxic, man-made contaminants that accumulate preferentially in marine ecosystems and in the lipid reserves of organisms. Extraction and concentration of fish oils therefore represents an inherent nutritional-toxicological conflict. This study aimed to provide the first quantitative comparison of the nutritional (EPA and DHA) versus the toxicological profiles of Antarctic krill oil products, relative to various fish oil categories available on the Australian market. Krill oil products were found to adhere closely to EPA and DHA manufacturer specifications and overall were ranked as containing intermediate levels of POP contaminants when compared to the other products analysed. Monitoring of the pollutant content of fish and krill oil products will become increasingly important with expanding regulatory specifications for chemical thresholds. PMID:25170991

  11. Physiological responses of three species of Antarctic mixotrophic phytoflagellates to changes in light and dissolved nutrients.

    PubMed

    McKie-Krisberg, Zaid M; Gast, Rebecca J; Sanders, Robert W

    2015-07-01

    Antarctic phototrophs are challenged by extreme temperatures, ice cover, nutrient limitation, and prolonged periods of darkness. Yet this environment may also provide niche opportunities for phytoplankton utilizing alternative nutritional modes. Mixotrophy, the combination of photosynthesis and particle ingestion, has been proposed as a mechanism for some phytoplankton to contend with the adverse conditions of the Antarctic. We conducted feeding experiments using fluorescent bacteria-sized tracers to compare the effects of light and nutrients on bacterivory rates in three Antarctic marine photosynthetic nanoflagellates representing two evolutionary lineages: Cryptophyceae (Geminigera cryophila) and Prasinophyceae (Pyramimonas tychotreta and Mantoniella antarctica). Only G. cryophila had previously been identified as mixotrophic. We also measured photoautotrophic abilities over a range of light intensities (P vs. I) and used dark survival experiments to assess cell population dynamics in the absence of light. Feeding behavior in these three nanoflagellates was affected by either light, nutrient levels, or a combination of both factors in a species-specific manner that was not conserved by evolutionary lineage. The different responses to environmental factors by these mixotrophs supported the idea of tradeoffs in the use of phagotrophy and phototrophy for growth.

  12. Antarctic Data Management as Part of the IPY Legacy

    NASA Astrophysics Data System (ADS)

    de Bruin, T.

    2006-12-01

    The Antarctic Treaty states that "scientific observations and results from Antarctica shall be exchanged and made freely available". Antarctica includes the Southern Ocean. In support of this, National Antarctic Data Centres (NADC) are being established to catalogue data sets and to provide information on data sets to scientists and others with interest in Antarctic science. The Joint Committee on Antarctic Data Management (JCADM) was established by the Scientific Committee on Antarctic Research (SCAR) and the Council of Managers of National Antarctic Programs (COMNAP). JCADM comprises representatives of the National Antarctic Data Centres. Currently 30 nations around the world are represented in JCADM. JCADM is responsible for the Antarctic Master Directory (AMD), the internationally accessible, web-based, searchable record of Antarctic and Southern Ocean data set descriptions. The AMD is directly integrated into the international Global Change Master Directory (GCMD) to help further merge Antarctic science into global science. The AMD is a resource for scientists to advertise the data they have collected and to search for data they may need. JCADM is the Antarctic component of the IPY Data Infrastructure, which is presently being developed. This presentation will give an overview of the organization of Antarctic and Southern Ocean data management with sections on the organizational structure of JCADM, contents of the Antarctic Master Directory, relationships to the SCAR Scientific Research Programmes (SRP) and IPY, international embedding and connections with discipline-based peer organizations like the International Oceanographic Data and Information Exchange Committee (IODE). It will focus primarily on the role that an existing infrastructure as JCADM, may play in the development of the IPY Data Infrastructure and will provide considerations for IPY data management, based on the experiences in Antarctic and oceanographic data management.

  13. Crustacea in Arctic and Antarctic sea ice: distribution, diet and life history strategies.

    PubMed

    Arndt, Carolin E; Swadling, Kerrie M

    2006-01-01

    This review concerns crustaceans that associate with sea ice. Particular emphasis is placed on comparing and contrasting the Arctic and Antarctic sea ice habitats, and the subsequent influence of these environments on the life history strategies of the crustacean fauna. Sea ice is the dominant feature of both polar marine ecosystems, playing a central role in physical processes and providing an essential habitat for organisms ranging in size from viruses to whales. Similarities between the Arctic and Antarctic marine ecosystems include variable cover of sea ice over an annual cycle, a light regimen that can extend from months of total darkness to months of continuous light and a pronounced seasonality in primary production. Although there are many similarities, there are also major differences between the two regions: The Antarctic experiences greater seasonal change in its sea ice extent, much of the ice is over very deep water and more than 80% breaks out each year. In contrast, Arctic sea ice often covers comparatively shallow water, doubles in its extent on an annual cycle and the ice may persist for several decades. Crustaceans, particularly copepods and amphipods, are abundant in the sea ice zone at both poles, either living within the brine channel system of the ice-crystal matrix or inhabiting the ice-water interface. Many species associate with ice for only a part of their life cycle, while others appear entirely dependent upon it for reproduction and development. Although similarities exist between the two faunas, many differences are emerging. Most notable are the much higher abundance and biomass of Antarctic copepods, the dominance of the Antarctic sea ice copepod fauna by calanoids, the high euphausiid biomass in Southern Ocean waters and the lack of any species that appear fully dependent on the ice. In the Arctic, the ice-associated fauna is dominated by amphipods. Calanoid copepods are not tightly associated with the ice, while harpacticoids and

  14. Sampling Interplanetary Dust Particles from Antarctic Air

    NASA Astrophysics Data System (ADS)

    Taylor, S.; Lever, J. H.; Alexander, C. M. O'D.; Brownlee, D. E.; Messenger, S.; Littler, L. R.; Stroud, R. M.; Wozniakiewicz, P.; Clement, S.

    2016-08-01

    We are undertaking a NASA and NSF supported project to filter large volumes of clean Antarctic air to collect a broad range of cosmic dust, including CP-IDPs, rare ultra-carbonaceous particles and particles derived from specific meteor streams.

  15. Antarctic Meteorite Newsletter, volume 6, number 2

    NASA Technical Reports Server (NTRS)

    1983-01-01

    Meteorites from the 1981 and 1982 Antarctic collection are listed showing classification, weight, degree of weathering, degree of fractionation, % Fa, and % Fs. Physical and petrigraphic characteristics are described for 23 samples from the Allan Hills, Thiel Mountains, the Pecora Escarpment, and the Elephant Moraine locations.

  16. NASA/NSF Antarctic Science Working Group

    NASA Technical Reports Server (NTRS)

    Stoklosa, Janis H.

    1990-01-01

    A collection of viewgraphs on NASA's Life Sciences Biomedical Programs is presented. They show the structure of the Life Sciences Division; the tentative space exploration schedule from the present to 2018; the biomedical programs with their objectives, research elements, and methodological approaches; validation models; proposed Antarctic research as an analog for space exploration; and the Science Working Group's schedule of events.

  17. Contrasting Arctic and Antarctic sea ice temperatures

    NASA Astrophysics Data System (ADS)

    Vancoppenolle, Martin; Raphael, Marilyn; Rousset, Clément; Vivier, Frédéric; Moreau, Sébastien; Delille, Bruno; Tison, Jean-Louis

    2016-04-01

    Sea ice temperature affects the sea ice growth rate, heat content, permeability and habitability for ice algae. Large-scale simulations with NEMO-LIM suggest large ice temperature contrasts between the Arctic and the Antarctic sea ice. First, Antarctic sea ice proves generally warmer than in the Arctic, in particular during winter, where differences reach up to ~10°C. Second, the seasonality of temperature is different among the two hemispheres: Antarctic ice temperatures are 2-3°C higher in spring than they are in fall, whereas the opposite is true in the Arctic. These two key differences are supported by the available ice core and mass balance buoys temperature observations, and can be attributed to differences in air temperature and snow depth. As a result, the ice is found to be habitable and permeable over much larger areas and much earlier in late spring in the Antarctic as compared with the Arctic, which consequences on biogeochemical exchanges in the sea ice zone remain to be evaluated.

  18. Development of the Circum-Antarctic Current

    USGS Publications Warehouse

    Kennett, J.P.; Houtz, R.E.; Andrews, P.B.; Edwards, A.R.; Gostin, V.A.; Hajos, M.; Hampton, M.A.; Jenkins, D.G.; Margolis, S.V.; Ovenshine, A.T.; Perch-Nielsen, K.

    1974-01-01

    Deep-sea drilling in the Southern Ocean south of Australia and New Zealand shows that the Circum-Antarctic Current developed about 30 million years ago in the middle to late Oligocene when final separation occurred between Antarctica and the continental Soulth Tasman Rise. Australia had commenced drifting northward from Antarctica 20 million years before this.

  19. Contrasts between Antarctic and Arctic ozone depletion.

    PubMed

    Solomon, Susan; Portmann, Robert W; Thompson, David W J

    2007-01-01

    This work surveys the depth and character of ozone depletion in the Antarctic and Arctic using available long balloon-borne and ground-based records that cover multiple decades from ground-based sites. Such data reveal changes in the range of ozone values including the extremes observed as polar air passes over the stations. Antarctic ozone observations reveal widespread and massive local depletion in the heart of the ozone "hole" region near 18 km, frequently exceeding 90%. Although some ozone losses are apparent in the Arctic during particular years, the depth of the ozone losses in the Arctic are considerably smaller, and their occurrence is far less frequent. Many Antarctic total integrated column ozone observations in spring since approximately the 1980s show values considerably below those ever observed in earlier decades. For the Arctic, there is evidence of some spring season depletion of total ozone at particular stations, but the changes are much less pronounced compared with the range of past data. Thus, the observations demonstrate that the widespread and deep ozone depletion that characterizes the Antarctic ozone hole is a unique feature on the planet. PMID:17202269

  20. Nitrous Oxide In The Antarctic Stratosphere

    NASA Technical Reports Server (NTRS)

    Podolske, J. R.; Loewenstein, M.; Strahan, S. E.; Chan, K. R.

    1991-01-01

    Paper reports on measurements of nitrous oxide (N2O) in upper atmosphere of Southern Hemisphere, made by tunable-laser absorption spectrometer on airplane. Measurements fill gap in information about distribution of N2O over Antarctic while ozone hole forming.

  1. Development of the circum-antarctic current.

    PubMed

    Kennett, J P; Houtz, R E; Andrews, P B; Edwards, A R; Gostin, V A; Hajos, M; Hampton, M A; Jenkins, D G; Margolis, S V; Ovenshine, A T; Perch-Nielsen, K

    1974-10-11

    Deep-sea drilling in the Southern Ocean south of Australia and New Zealand shows that the Circum-Antarctic Current developed about 30 million years ago in the middle to late Oligocene when final separation occurred between Antarctica and the continental South Tasman Rise. Australia had commenced drifting northward from Antarctica 20 million years before this. PMID:17744222

  2. Antarctic springtime depletion of atmospheric mercury.

    PubMed

    Ebinghaus, Ralf; Kock, Hans H; Temme, Christian; Einax, Jürgen W; Lowe, Astrid G; Richter, Andreas; Burrows, John P; Schroeder, William H

    2002-03-15

    Unlike other heavy metals that are inherently associated with atmospheric aerosols, mercury in ambient air exists predominantly in the gaseous elemental form. Because of its prolonged atmospheric residence time, elemental mercury vapor is distributed on a global scale. Recently, Canadian researchers have discovered that total gaseous mercury levels in the lower tropospheric boundary layer in the Canadian Arctic are often significantly depleted during the months after polar sunrise. A possible explanation may involve oxidation of elemental mercury, followed by adsorption and deposition of the oxidized form, leading to an increased input of atmospheric mercury into the Arctic ecosystem. Here we present the first continuous high-time-resolution measurements of total gaseous mercury in the Antarctic covering a 12-month period between January 2000 and January 2001 at the German Antarctic research station Neumayer (70 degrees 39' S, 8 degrees 15' W). We report that mercury depletion events also occur in the Antarctic after polar sunrise and compare our measurements with a data setfrom Alert, Nunavut, Canada. We also present indications that BrO radicals and ozone play a key role in the boundary-layer chemistry during springtime mercury depletion events in the Antarctic troposphere.

  3. Development of the circum-antarctic current.

    PubMed

    Kennett, J P; Houtz, R E; Andrews, P B; Edwards, A R; Gostin, V A; Hajos, M; Hampton, M A; Jenkins, D G; Margolis, S V; Ovenshine, A T; Perch-Nielsen, K

    1974-10-11

    Deep-sea drilling in the Southern Ocean south of Australia and New Zealand shows that the Circum-Antarctic Current developed about 30 million years ago in the middle to late Oligocene when final separation occurred between Antarctica and the continental South Tasman Rise. Australia had commenced drifting northward from Antarctica 20 million years before this.

  4. Relevance of antarctic microbial ecosystems to exobiology

    NASA Technical Reports Server (NTRS)

    Mckay, Christopher P.

    1993-01-01

    Antarctic microbial ecosystems which provide biological and physical analogs that can be used in exobiology are studied. Since the access to extraterrestrial habitats is extremely difficult, terrestrial analogs represent the best opportunity for both formulation and preliminary testing of hypothesis about life. Antarctica, as one of few suitable environments on earth is considered to be a major locus of progress in exobiology.

  5. Antarctic Peninsula Tidewater Glacier Dynamics

    NASA Astrophysics Data System (ADS)

    Pettit, E. C.; Scambos, T. A.; Haran, T. M.; Wellner, J. S.; Domack, E. W.; Vernet, M.

    2015-12-01

    The northern Antarctic Peninsula (nAP, north of 66°S) is a north-south trending mountain range extending transverse across the prevailing westerly winds of the Southern Ocean resulting in an extreme west-to-east precipitation gradient. Snowfall on the west side of the AP is one to two orders of magnitude higher than the east side. This gradient drives short, steep, fast-flowing glaciers into narrow fjords on the west side, while longer lower-sloping glaciers flow down the east side into broader fjord valleys. This pattern in ice dynamics affects ice-ocean interaction on timescales of decades to centuries, and shapes the subglacial topography and submarine bathymetry on timescales of glacial cycles. In our study, we calculate ice flux for the western and eastern nAP using a drainage model that incorporates the modern ice surface topography, the RACMO-2 precipitation estimate, and recent estimates of ice thinning. Our results, coupled with observed rates of ice velocity from InSAR (I. Joughin, personal communication) and Landsat 8 -derived flow rates (this study), provide an estimate of ice thickness and fjord depth in grounded-ice areas for the largest outlet glaciers. East-side glaciers either still terminate in or have recently terminated in ice shelves. Sedimentary evidence from the inner fjords of the western glaciers indicates they had ice shelves during LIA time, and may still have transient floating ice tongues (tabular berg calvings are observed). Although direct oceanographic evidence is limited, the high accumulation rate and rapid ice flux implies cold basal ice for the western nAP glaciers and therefore weak subglacial discharge relative to eastern nAP glaciers and or other tidewater fjord systems such as in Alaska. Finally, despite lower accumulation rates on the east side, the large elongate drainage basins result in a greater ice flux funneled through fewer deeper glaciers. Due to the relation between ice flux and erosion, these east-side glaciers

  6. Multichannel Seismic Investigations of Sediment Drifts off West Antarctica and the Antarctic Peninsula: Preliminary Results from Research Cruise JR298

    NASA Astrophysics Data System (ADS)

    Larter, R. D.; Graham, A. G. C.; Hernandez-Molina, J.; Channell, J. E. T.; Hillenbrand, C. D.; Hogan, K. A.; Uenzelmann-Neben, G.; Gohl, K.; Rebesco, M.; Hodell, D. A.

    2015-12-01

    The West Antarctic Ice Sheet (WAIS) and Antarctic Peninsula Ice Sheet (APIS) have exhibited significant changes over recent decades but there is still great uncertainty about how rapidly and how far they will retreat in a warmer climate. For example, it remains unclear whether or not the marine-based WAIS "collapsed" during the last interglacial period, resulting in a global sea-level rise contribution of more than 3 m. Previous studies, including Ocean Drilling Program (ODP) Leg 178, have shown that sediment drifts on the continental rise west of the Antarctic Peninsula contain a rich high-resolution archive of Antarctic margin paleoceanography and APIS history that extends back to at least the Late Miocene. The potential of existing ODP cores from the drifts is, however, compromised by the fact that composite sections are incomplete and lack of precise chronological control. A new drilling proposal (732-Full2) has been scientifically approved and is with the JOIDES Resolution Facilities Board of the International Ocean Discovery Program for scheduling. The main aims of the proposal are to obtain continuous, high-resolution records from sites on sediment drifts off both the Antarctic Peninsula and West Antarctica (southern Bellingshausen Sea) and to achieve good chronological control on them using a range of techniques. We present preliminary results from a recent site survey investigation cruise on RRS James Clark Ross (JR298) that obtained high-resolution multichannel seismic reflection data over the proposed sites and adjacent working areas. The new data provide a basis for interpretation of (i) sedimentary processes that operated during the development of the drifts, and (ii) links between depositional systems on the continental rise, paleo-ice-sheet dynamics and paleoceanographic processes. Through further analyses of seismic and other geophysical data, in combination with marine sediment cores retrieved from the proposed sites, we aim to provide insight into

  7. Fusion of the OsmC domain from esterase EstO confers thermolability to the cold-active xylanase Xyn8 from Pseudoalteromonas arctica.

    PubMed

    Elleuche, Skander; Piascheck, Henning; Antranikian, Garabed

    2011-03-01

    The OsmC-region (osmotically induced protein family) of the two-domain esterase EstO from the psychrotolerant bacterium Pseudoalteromonas arctica has been shown to increase thermolability. In an attempt to test if these properties can be conferred to another enzyme, we genetically fused osmC to the 3'-region of the family 8 xylanase encoding gene xyn8 from P. arctica. The chimeric open reading frame xyn8-OsmC was cloned and the chimeric protein was purified after heterologous expression in Escherichia coli. Xyn8 and Xyn8-OsmC showed cold-adapted properties (more than 60% activity at 0°C) using birchwood xylan as the preferred substrate. Maximal catalytic activity is slightly shifted from 15°C (Xyn8) to 20°C for Xyn8-OsmC. Thermostability of Xyn8-OsmC is significantly changed in comparison to wild-type Xyn8. The OsmC-fusion variant showed an apparent decrease in thermostability between 40 and 45°C, while both proteins are highly instable at 50°C.

  8. Identification of structural and morphogenesis genes of Pseudoalteromonas phage φRIO-1 and placement within the evolutionary history of Podoviridae

    PubMed Central

    Hardies, Stephen C.; Thomas, Julie A.; Black, Lindsay; Weintraub, Susan T.; Hwang, Chung Y.; Cho, Byung C.

    2016-01-01

    The virion proteins of Pseudoalteromonas phage φRIO-1 were identified and quantitated by mass spectrometry and gel densitometry. Bioinformatic methods customized to deal with extreme divergence defined a φRIO-1 tail structure homology group of phages, which was further related to T7 tail and internal virion proteins (IVPs). Similarly, homologs of tubular tail components and internal virion proteins were identified in essentially all completely sequenced podoviruses other than those in the subfamily Picovirinae. The podoviruses were subdivided into several tail structure homology groups, in addition to the RIO-1 and T7 groups. Molecular phylogeny indicated that these groups all arose about the same ancient time as the φRIO-1/T7 split. Hence, the T7-like infection mechanism involving the IVPs was an ancestral property of most podoviruses. The IVPs were found to variably host both tail lysozyme domains and domains destined for the cytoplasm, including the N4 virion RNA polymerase embedded within an IVP-D homolog. PMID:26748333

  9. Marine biology

    SciTech Connect

    Thurman, H.V.; Webber, H.H.

    1984-01-01

    This book discusses both taxonomic and ecological topics on marine biology. Full coverage of marine organisms of all five kingdoms is provided, along with interesting and thorough discussion of all major