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Sample records for antti ainamo janne

  1. The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator

    PubMed Central

    Bakolitsa, Constantina; Bateman, Alex; Jin, Kevin K.; McMullan, Daniel; Krishna, S. Sri; Miller, Mitchell D.; Abdubek, Polat; Acosta, Claire; Astakhova, Tamara; Axelrod, Herbert L.; Burra, Prasad; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Das, Debanu; Deller, Marc C.; Duan, Lian; Elias, Ylva; Feuerhelm, Julie; Grant, Joanna C.; Grzechnik, Anna; Grzechnik, Slawomir K.; Han, Gye Won; Jaroszewski, Lukasz; Klock, Heath E.; Knuth, Mark W.; Kozbial, Piotr; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Murphy, Kevin D.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Reyes, Ron; Rife, Christopher L.; Sefcovic, Natasha; Tien, Henry; Trame, Christine B.; Trout, Christina V.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Elsliger, Marc-André; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott; Wilson, Ian A.

    2010-01-01

    The crystal structure of Jann_2411 from Jannaschia sp. strain CCS1, a member of the Pfam PF07336 family classified as a domain of unknown function (DUF1470), was solved to a resolution of 1.45 Å by multiple-wavelength anomalous dispersion (MAD). This protein is the first structural representative of the DUF1470 Pfam family. Structural analysis revealed a two-domain organization, with the N-terminal domain presenting a new fold called the ABATE domain that may bind an as yet unknown ligand. The C-terminal domain forms a treble-clef zinc finger that is likely to be involved in DNA binding. Analysis of the Jann_2411 protein and the broader ABATE-domain family suggests a role as stress-induced transcriptional regulators. PMID:20944211

  2. Characterization of Compressive Creep Behavior of Oxide/Oxide Composite with Monazite Coating at Elevated Temperature

    DTIC Science & Technology

    2006-03-01

    Materials, and Structures: A. Ed. Mrityunjay Singh and Todd Jensen. Westerville, OH: The American Ceramic Society, 2001. 5. Antti, M-L, E. Lara-Curzio... Emmanuel E. Boakye, Pavel Mogilevsky, and Michael K. Cinibulk. “Effectiveness of Monazite Coatings in Oxide/Oxide Composites after Long-Term Exposure

  3. Dual-Targeting of AR and Akt Pathways by Berberine in Castration-Resistant Prostate Cancer

    DTIC Science & Technology

    2014-08-01

    suppression of AR signaling in prostate cancer. Clin Cancer Res 2009; 15: 4792-8. [3] Pienta KJ, Bradley D. Mechanisms underlying the development of...Yu J, Chen Z, Beroukhim R, Wang H, Lupien M, Wu T, Regan MM, Meyer CA, Carroll JS, Manrai AK, Janne OA et al. Androgen receptor regulates a

  4. Tumor Genomic Profiling in Breast Cancer Patients Using Targeted Massively Parallel Sequencing

    DTIC Science & Technology

    2014-01-01

    Busaidy N, Ruan DT, Janne PA, Limaye SA, Wirth LJ, Barletta JA, Rabinowits G, Garraway LA, Van Allen EM, Wagle N, Hanna GJ , Misiukiewicz K, Suda M...Varela I, Bignell GR, Yates LR, Papaemmanuil E, Beare D, Butler A, Cheverton A, Gamble J, Hinton J, Jia M, Jayakumar A, Jones D, Latimer C, Lau KW

  5. An Investigation into Component Reconfigurability Management for Dependable Ad-Hoc Networking

    DTIC Science & Technology

    2007-11-02

    Albrecht Schmidt, "Sensor-based Context-Awareness for Situated Computing", Workshop on Software Engineering and Pervasive Computing SEWPC00 at ICSE 2000...the 8th International Python Conference, Arlington, VA, USA. 24-27 January, 2000 [KindbergBarton2001] Tim Kindberg, John Barton, Jeff Morgan, Gene...Schmidt, Albrecht , Kofi Asante Aidoo, Antti Takaluoma, Urpo Tuomela, Kristof Van Laerhoven and Walter Van de Velde (1999). Advanced interaction in

  6. Colloidal Stability of Gold Nanoparticles Coated with Multithiol-Poly(ethylene glycol) Ligands: Importance of Structural Constraints of the Sulfur Anchoring Groups

    DTIC Science & Technology

    2013-08-13

    Multithiol- Poly (ethylene glycol) Ligands: Importance of Structural Constraints of the Sulfur Anchoring Groups Eunkeu Oh, Kimihiro Susumu, Antti...TITLE AND SUBTITLE Colloidal Stability of Gold Nanoparticles Coated with Multithiol- Poly (ethylene glycol) Ligands: Importance of Structural Constraints...Standard Form 298 (Rev. 8-98) Prescribed by ANSI Std Z39-18 - 1 - Colloidal Stability of Gold Nanoparticles Coated with Multithiol- Poly (ethylene

  7. Efficacy of chlorhexidine and green tea mouthwashes in the management of dental plaque-induced gingivitis: A comparative clinical study

    PubMed Central

    Priya, B. Meena; Anitha, V.; Shanmugam, M.; Ashwath, B.; Sylva, Suganthi D.; Vigneshwari, S. K.

    2015-01-01

    Background: The intake of green tea has been increased recently due to its medicinal values. The antibacterial and antioxidant properties of green tea were found to be beneficial in the treatment of gingival and periodontal diseases. The aim of this comparative study was to compare the efficacy of the mouthwash containing green tea and chlorhexidine in the management of dental plaque-induced gingivitis. Materials and Methods: Thirty patients who participated in the study were divided randomly into two groups, each group of 15 patients was prescribed with either chlorhexidine or green tea mouthwash. Turesky modification of Quigley-Hein plaque index, Löe and Silness gingival index, Ainamo and Bay bleeding index, tooth stain, and tongue stain (TS) were recorded at baseline, 15 days, and 1 month. The subjects were asked to report any discomfort or alteration in taste. Results: There was a significant decrease in plaque index, gingival index, and bleeding index in both the groups. However, green tea mouthwash resulted in a statistically significant decrease in bleeding index compared to chlorhexidine group. There was no significant difference in tooth stain and TS in both the groups. Conclusion: The green tea-containing mouthwash is equally effective in reducing the gingival inflammation and plaque to chlorhexidine. PMID:26681856

  8. Professional flossing as a diagnostic method for gingivitis in the primary dentition.

    PubMed

    Mariath, Adriela Azevedo Souza; Bressani, Ana Eliza Lemes; Haas, Alex Nogueira; Araujo, Fernando Borba de; Rösing, Cassiano Kuchenbecker

    2008-01-01

    The aim of this study was to evaluate flossing as a diagnostic method for interproximal gingival bleeding in children. For this crossover study, 23 pre-schoolchildren presenting neither restorations nor approximal carious cavities and with at least 15% of gingival bleeding sites were selected. Examinations were performed at three different moments (3-4 days interval). Examinations comprised repeated measurements of two gingival indices with a 10-minute interval in the following sequences: the Ainamo & Bay Gingival Bleeding Index (GBI) followed by the Carter & Barnes flossing index (CBI); CBI followed by GBI; and GBI followed by GBI. Data analysis was performed only for the interproximal sites, considering the GBI as the gold-standard. Agreement between indices, sensitivity (SE), specificity (SP), positive (PPV) and negative predictive values (NPV) were estimated. Percentage agreements in sequences GBI-CBI, CBI-GBI and GBI-GBI were 70.3%, 76.4% and 84.5%, respectively. Validation of flossing in the first sequence (GBI-CBI) resulted in values of 0.61 (95%CI 0.53 - 0.68), 0.72 (95%CI 0.69 - 0.76), 0.33 (95%CI 0.28 - 0.39) and 0.89 (95%CI 0.86 - 0.92) respectively for SE, SP, PPV and NPV. It can be concluded that professional flossing is a useful tool in the diagnosis of interproximal gingival inflammatory status in children, especially in conditions of gingival health.

  9. The effect of two toothpastes on plaque and gingival inflamation.

    PubMed

    Saxer, U P; Menghini, G; Bohnert, K J; Ley, F

    1995-01-01

    In this study on 60 adult subjects, the effective of Parodontax, a dentifrice containing herbal ingredients and sodium bicarbonate abrasive, was compared to a non-marketed new toothpaste containing herbal ingredients and calcium hydrogen phosphate as the abrasive. Plaque, gingivitis and gingival bleeding parameters were scored. The periodontal probe bleeding index of Ainamo and Bay was modified to score slight and moderate bleeding. In this first four-week period all subjects used the new toothpaste. After this period the new toothpaste produced a significant decrease (p<0.01) in gingivitis and bleeding on probing, but no effect on plaque was observed. During the second period of eight weeks the subjects were randomly divided into two groups, one using Parodontax and the other group continuing with the new toothpaste. The study design was a double-blind procedure. At the end of the 12-week study period the plaque index showed no changes in both groups. The gingivitis and bleeding indices decreased significantly (p<0.001) by 40% in both groups compared to the baseline examination.

  10. Night Vision Laboratory Static Performance Model for Thermal Viewing Systems

    DTIC Science & Technology

    1975-04-01

    Electro-Science Laboratory, Columbus, Ohio, May 1968, AD 831666. 5:’ 4,0 L~IGT FOG - CLEAH TO Li-3HT HAZE 0.01 - VERY LL I CLEAR 0.5 1.0 2 34 63810 20...Next, note that for a simple imaging system Ii’Ad L 7r Ad2 LL () AT (49 where 77o(X) = the optical efficiency of the viewer F = the f/number T...CSeATV.CJNL NU AN2/ S:STPMUL) LL ,-km. PAGL f’JLL CS WAIT. CLEAR SCRN-EN, PRINT ’JANNE.R9 AND RETURN. CSIO CALL CUJNNEC(.5LIN1-UTs0) CS CALL CUNNLCCbL0UTPUTa0) C

  11. Oral Health Scales: Design of an Oral Health Scale of Infectious Potential

    PubMed Central

    Relvas, Marta; Diz, Pedro; Seoane, Juan

    2013-01-01

    Objectives: In this paper we propose a new Global Oral Health Scale that will allow the infectious potential of the oral cavity, clinically manifest as local and focal infections, to be condensed into a single parameter. Study Design: Based on a number of oral health scales previously designed by our group, we designed a final version that incorporates dental and periodontal variables (some of them evaluated using corroborated objective indices) that reflect the presence of caries and periodontal disease. Results: The application of the proposed oral health scale requires the examination of 6 sites per tooth (mesio-buccal, medio-buccal, disto-buccal, disto-lingual, medio-lingual and mesio-lingual). The following variables are analysed: number of tooth surfaces with supragingival plaque, determined using the O’Leary index; number of teeth with caries and the severity of the caries; number of tooth surfaces with gingival inflammation, determined using the Ainamo and Bay index; and number of tooth surfaces with pockets ?4 mm and severity of the pockets. These variables are then grouped into 2 categories, dental and periodontal. The final grades of dental and periodontal health correspond to the grades assigned to a least 2 of the 3 variables analysed in each of these categories. The category (dental or periodontal) with the highest grade is the one that determines the grade of the Global Oral Health Scale. Conclusion: This scale could be particularly useful for the epidemiological studies comparing different populations and for analysis of the influence of distinct degrees of oral health on the development of certain systemic diseases. Key words:Scale, oral health, infectious potential, systemic disease. PMID:23524418

  12. Analysis of differential splicing suggests different modes of short-term splicing regulation

    PubMed Central

    Topa, Hande; Honkela, Antti

    2016-01-01

    Motivation: Alternative splicing is an important mechanism in which the regions of pre-mRNAs are differentially joined in order to form different transcript isoforms. Alternative splicing is involved in the regulation of normal physiological functions but also linked to the development of diseases such as cancer. We analyse differential expression and splicing using RNA-sequencing time series in three different settings: overall gene expression levels, absolute transcript expression levels and relative transcript expression levels. Results: Using estrogen receptor α signaling response as a model system, our Gaussian process-based test identifies genes with differential splicing and/or differentially expressed transcripts. We discover genes with consistent changes in alternative splicing independent of changes in absolute expression and genes where some transcripts change whereas others stay constant in absolute level. The results suggest classes of genes with different modes of alternative splicing regulation during the experiment. Availability and Implementation: R and Matlab codes implementing the method are available at https://github.com/PROBIC/diffsplicing. An interactive browser for viewing all model fits is available at http://users.ics.aalto.fi/hande/splicingGP/ Contact: hande.topa@helsinki.fi or antti.honkela@helsinki.fi Supplementary information: Supplementary data are available at Bioinformatics online. PMID:27307611

  13. [Extraction and characterization of the lipopolysaccharide of Bartonella quintana

    PubMed

    Matera, G.; Liberto, M.C.; Pollio, A.; Diana, R.; Martucci, M.; Parlato, G.; Gulletta, E.; Foca', A.

    1999-01-01

    Bartonella quintana has been reported as the cause of trench fever, persistent endocarditis, bacteriaemia and has been isolated with an increasing incidence in clinical specimens from AIDS patients. One of the main pathogenic factors of gram-negative bacteria, including B. quintana, is the lipopolysaccharide (LPS). However, very little information is available on the features of Bartonella LPS. The aim of the present study was to extract, purify and characterise B. quintana LPS. The effect of the LPS under scrutiny was also evaluated on TNFa release by means of the "in vitro" human whole blood model of sepsis. The Oklahoma strain of B. quintana was grown on sheep blood agar, at 37 C, in a moist atmosphere containing 5% carbon dioxide. Cells were harvested and washed in sterile and apyrogenic saline solution and LPS extracted following the procedure of Westphal e Jann (1965), modified by Minnick (1994). The LPS of B. quintana showed the migration pattern of a deep rough chemotype, and the chromogenic limulus amoebocyte lysate test (LAL test) revealed strong reactivity at low concentrations (6.2 pg/ml). Samples of human whole blood stimulated by 1000 ng/ml of B. quintana LPS released 1707 378 pg/ml of TNFa.

  14. [Biological activity of lipopolysaccharides from clinical Bacteroides fragilis strains isolated in Poland determined in reaction with limulus amoebocyte lysate].

    PubMed

    Rokosz, Alicja; Górska, Paulina; Michałkiewicz, Jacek; Łuczak, Miroslaw

    2003-01-01

    The aim of this study was to determine a biological activity of lipopolysaccharides (LPS) from clinical Bacterioides fragilis strains isolated in Poland by means of quantitative, photometric BET (LAL) method with Limulus polyphemus amoebocyte lysate and chromogenic substrate S-2423. Lipopolysaccharides were extracted from nine clinical B. fragilis strains by the procedure of Westphal and Jann (1965). Crude LPS preparations were purified with ultracentrifugation. Biological activities of bacterial endotoxins were determined by quantitative BET method with chromogenic substrate S-2423 (ENDOCHROME kit). Tests were performed according to the recommendations of the producer (Charles River Endosafe Ltd., USA). E. coli O55:B5 LPS and LPS preparations from reference B. fragilis strains were applied to compare the results of examinations. Activities of endotoxins from clinical B. fragilis strains isolated in Poland determined in reaction with Limulus amoebocyte lysate were differentiated. Among endotoxins of clinical B. fragilis strains the most active was the preparation from strain cultured in the case of pancreatic ulcer (B. fragilis 80/81 LPS). Lipopolysaccharides of examined B. fragilis strains were less active in BET test than E. coli O55:B5 LPS.

  15. [Use of reactions with Limulus amoebocyte lysate (LAL) to determine biological activity of lipopolysaccharides from reference and clinical strains of the Bacteroides fragilis group].

    PubMed

    Rokosz, Alicja; Fiejka, Maria; Górska, Paulina; Aleksandrowicz, Janina; Meisel-Mikołajczyk, Felicja; Łuczak, MirosŁaw

    2002-01-01

    The aim of this study was to determine and compare a biological activity of lipopolysaccharides (LPS) from reference and clinical strains of strictly anaerobic bacteria belonging to the Bacteroides fragilis group (BFG) by means of quantitative, photometric BET (LAL) method with Limulus polyphemus amoebocyte lysate and chromogenic substrate S-2423. Lipopolysaccharides of five BFG species were extracted by Westphal and Jann method (1965) from eight reference and two clinical strains of B. fragilis group. Crude LPS preparations were purified according to the procedure described by Gmeiner (1975) with ultracentrifugation and nuclease treatment. Biological activities of bacterial endotoxins were determined by quantitative BET method with chromogenic substrate S-2423 (ENDOCHROME kit, Charles River Endosafe Ltd., USA). Tests were performed according to the producer's recommendations. E. coli O55:B5 LPS was applied to compare its activity in reaction with LAL reagent with activities of LPS preparations from rods of the Bacteroides genus. Among examined bacterial compounds the most active in BET method was E. coli O55:B5 LPS. Activities of lipopolysaccharides from five species of BFG rods in reaction with Limulus amoebocyte lysate were differentiated. Greater ability to activate LAL proenzyme revealed lipopolysaccharides of these species of the Bacteroides genus, which are important from the clinical point of view--B. fragilis and B. thetaiotaomicron.

  16. PREFACE: 7th EEIGM International Conference on Advanced Materials Research

    NASA Astrophysics Data System (ADS)

    Joffe, Roberts

    2013-12-01

    The 7th EEIGM Conference on Advanced Materials Research (AMR 2013) was held at Luleå University of Technology on the 21-22 March 2013 in Luleå, SWEDEN. This conference is intended as a meeting place for researchers involved in the EEIGM programme, in the 'Erasmus Mundus' Advanced Materials Science and Engineering Master programme (AMASE) and the 'Erasmus Mundus' Doctoral Programme in Materials Science and Engineering (DocMASE). This is great opportunity to present their on-going research in the various fields of Materials Science and Engineering, exchange ideas, strengthen co-operation as well as establish new contacts. More than 60 participants representing six countries attended the meeting, in total 26 oral talks and 19 posters were presented during two days. This issue of IOP Conference Series: Materials Science and Engineering presents a selection of articles from EEIGM-7 conference. Following tradition from previous EEIGM conferences, it represents the interdisciplinary nature of Materials Science and Engineering. The papers presented in this issue deal not only with basic research but also with applied problems of materials science. The presented topics include theoretical and experimental investigations on polymer composite materials (synthetic and bio-based), metallic materials and ceramics, as well as nano-materials of different kind. Special thanks should be directed to the senior staff of Division of Materials Science at LTU who agreed to review submitted papers and thus ensured high scientific level of content of this collection of papers. The following colleagues participated in the review process: Professor Lennart Walström, Professor Roberts Joffe, Professor Janis Varna, Associate Professor Marta-Lena Antti, Dr Esa Vuorinen, Professor Aji Mathew, Professor Alexander Soldatov, Dr Andrejs Purpurs, Dr Yvonne Aitomäki, Dr Robert Pederson. Roberts Joffe October 2013, Luleå Conference photograph EEIGM7 conference participants, 22 March 2013 The PDF

  17. Role of the rfe gene in the synthesis of the O8 antigen in Escherichia coli K-12.

    PubMed Central

    Rick, P D; Hubbard, G L; Barr, K

    1994-01-01

    The Escherichia coli O8 antigen is a mannan composed of the trisaccharide repeat unit -->3)-alpha-Man-(1-->2)-alpha-Man-(1-->2)-alpha-Man-(1--> (K. Reske and K. Jann, Eur. J. Biochem. 67:53-56, 1972), and synthesis of the O8 antigen is rfe dependent (G. Schmidt, H. Mayer, and P. H. Mäkelä, J. Bacteriol. 127:755-762, 1976). The rfe gene has recently been identified as encoding a tunicamycin-sensitive UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (U. Meier-Dieter, K. Barr, R. Starman, L. Hatch, and P. D. Rick, J. Biol. Chem. 267:746-753, 1992). However, the role of rfe in O8 side chain synthesis is not understood. Thus, the role of the rfe gene in the synthesis of the O8 antigen was investigated in an rfbO8+ (rfb genes encoding O8 antigen) derivative of E. coli K-12 mutant possessing a defective phosphoglucose isomerase (pgi). The in vivo synthesis of O8 side chains was inhibited by the antibiotic tunicamycin. In addition, putative lipid carrier-linked O8 side chains accumulated in vivo when lipopolysaccharide outer core synthesis was precluded by growing cells in the absence of exogenously supplied glucose. The lipid carrier-linked O8 antigen was extracted from cells and treated with mild acid in order to release free O8 side chains. The water-soluble O8 side chains were then purified by affinity chromatography using Sepharose-bound concanavalin A. Characterization of the affinity-purified O8 side chains revealed the occurrence of glucosamine in the reducing terminal position of the polysaccharide chains. The data presented suggest that GlcNAc-pyrophosphorylundecaprenol functions as the acceptor of mannose residues for the in vivo synthesis of O8 side chains in E. coli K-12. Images PMID:7514591

  18. PREFACE: Progress in Nonequilibrium Green's Functions V (PNGF V)

    NASA Astrophysics Data System (ADS)

    van Leeuwen, Robert; Tuovinen, Riku; Bonitz, Michael

    2013-03-01

    , for assistance. We further thank professor Antti-Pekka Jauho for invaluable help and advice during the organization of the conference. The editors of the present conference proceedings acknowledge the authors for their excellent papers and all the referees for participating in a thorough peer-reviewing of the manuscripts. Finally, it is our pleasure to announce that the sixth conference 'Progress in Nonequilibrium Green's Functions' (PNGF6) will be held in August 2015 at the University of Lund, Sweden. Riku Tuovinen and Robert van Leeuwen University of Jyväskylä Michael Bonitz University of Kiel February 2013

  19. Sphagnum mosses as methane traps in two northern mires

    NASA Astrophysics Data System (ADS)

    Larmola, Tuula; Koponen, Hannu; Riutta, Terhi; Fritze, Hannu; Goodrich, Jordan; Varner, Ruth; Bubier, Jill; Juutinen, Sari; Rinne, Janne; Vesala, Timo; Martikainen, Pertti J.; Tuittila, Eeva-Stiina

    2010-05-01

    to the atmosphere from the same sites. Moss removal could increase the actual net flux of CH4 by up to 50%. Our results suggest that CH4 oxidation in the Sphagnum layer is potentially an important control for CH4 release from a mire ecosystem. Reference. Raghoebarsing, A.A., A.J.P. Smolders, M.C. Schmid, I.C. Rijpstra, M. Wolters-Arts, J. Derksen, M.S.M. Jetten, S. Schouten, J.S. Sinninghe Damsté, L.P.M. Lamers, J.G.M. Roelofs, H.J.M. Opden Camp and M. Strous 2005. Methanotrophic symbionts provide carbon for photosynthesis in peat bogs. Nature 436: 1153-1156. Sphagnum team. Hannu Koponen (2), Terhi Riutta (3), Hannu Fritze (4), Jordan Goodrich (5), Ruth Varner(5), Jill Bubier (6), Sari Juutinen (6), Janne Rinne (7), Timo Vesala (7), Pertti J. Martikainen (2) and Eeva-Stiina Tuittila (1)

  20. PREFACE: Atomic Spectra and Oscillator Strengths (ASOS9) Atomic Spectra and Oscillator Strengths (ASOS9)

    NASA Astrophysics Data System (ADS)

    Wahlgren, Glenn M.; Wiese, Wolfgang L.; Beiersdorfer, Peter

    2009-05-01

    For the first time since its inaugural meeting in Lund in 1983, the triennial international conference on Atomic Spectroscopy and Oscillator Strengths for Astrophysical and Laboratory Plasmas (ASOS) returned to Lund, Sweden. Lund has been a home to atomic spectroscopy since the time of Janne Rydberg, and included the pioneering work in laboratory and solar spectroscopy by Bengt Edlén, who presented the initial ASOS talk in 1983. The ninth ASOS was hosted by the Lund Observatory and Physics Department of Lund University, 7-10 August 2007, and was attended by 99 registrants. An encouraging sign for the field was the number of young researchers in attendance. This volume of Physica Scripta contains contributions from the invited presentations of the conference. For the first time, papers from the ASOS9 poster presentations have been made feely available online in a complementary volume of Journal of Physics: Conference Series. With these two volumes the character of ASOS9 is more evident, and together they serve as a review of the state of atomic spectroscopy for spectrum analysis and the determination of oscillator strengths and their applications. The goal of ASOS is to be a forum for atomic spectroscopy, where both the providers and the users of atomic data, which includes wavelengths, energy levels, lifetimes, oscillator strengths and line shape parameters, can meet to discuss recent advances in experimental and theoretical techniques and their application to understanding the physical processes that are responsible for producing observed spectra. The applications mainly originate from the fields of astrophysics and plasma physics, which includes fusion energy and lighting research. The oral presentations, all but one of which are presented in this volume, provided an extensive synopsis of techniques currently in use and those that are being planned. New to ASOS9 was the extent to which techniques such as cold, trapped atoms and molecules and frequency combs are

  1. From ASCAT to Sentinel-1: Soil Moisture Monitoring using European C-Band Radars

    NASA Astrophysics Data System (ADS)

    Wagner, Wolfgang; Bauer-Marschallinger, Bernhard; Hochstöger, Simon

    2016-04-01

    backscatter observation, the same physical processes and geophysical variables (e.g. vegetation optical depth, surface roughness, soil volume scattering, etc.) need to be considered. The difference lies mainly in the scaling, i.e. how prominently the different variables influence the C-band data at the different spatial (25 km versus 20 m) and temporal (daily versus 3-30 days repeat coverage) scales. Therefore, while the general properties of soil moisture retrievals schemes used for ASCAT and Sentinel-1 can be the same, the details of the algorithm and parameterization will be different. This presentation will review similarities and differences of soil moisture retrieval approaches used for ASCAT and Sentinel-1, with a focus on the change detection method developed by TU Wien. Some first comparisons of ASCAT and Sentinel-1 soil moisture data over Europe will also be shown. REFERENCES Entekhabi, D., Njoku, E.G., O'Neill, P.E., Kellog, K.H., Crow, W.T., Edelstein, W.N., Entin, J.K., Goodman, S.D., Jackson, T.J., Johnson, J., Kimball, J., Piepmeier, J.R., Koster, R., Martin, N., McDonald, K.C., Moghaddam, M., Moran, S., Reichle, R., Shi, J.C., Spencer, M.W., Thurman, S.W., Tsang, L., & Van Zyl, J. (2010). The Soil Moisture Active Passive (SMAP) mission. Proceedings of the IEEE, 98, 704-716 Hornacek, M., Wagner, W., Sabel, D., Truong, H.L., Snoeij, P., Hahmann, T., Diedrich, E., & Doubkova, M. (2012). Potential for High Resolution Systematic Global Surface Soil Moisture Retrieval via Change Detection Using Sentinel-1. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 5, 1303-1311 Wagner, W., Hahn, S., Kidd, R., Melzer, T., Bartalis, Z., Hasenauer, S., Figa-Saldana, J., De Rosnay, P., Jann, A., Schneider, S., Komma, J., Kubu, G., Brugger, K., Aubrecht, C., Züger, C., Gangkofer, U., Kienberger, S., Brocca, L., Wang, Y., Blöschl, G., Eitzinger, J., Steinnocher, K., Zeil, P., & Rubel, F. (2013). The ASCAT soil moisture product: A review of its

  2. PREFACE: Physics-Based Mathematical Models for Nanotechnology

    NASA Astrophysics Data System (ADS)

    Voon, Lok C. Lew Yan; Melnik, Roderick; Willatzen, Morten

    2008-03-01

    -Foreman correction) coupled to strain and piezoelectric potential calculation. In its turn, in its general setting the problem of strain and piezoelectric potential calculation requires the solution of a nonlinear system of partial differential equation. A large experience in solving these two parts of the problem separately, independently of each other, has been already accumulated in the distinct communities of the researchers. This BIRS workshop effectively combined expertise of these research communities, summarized the state-of-the-art for modeling LDSNs and key challenges facing these communities, and explored ways to address those challenges in interdisciplinary team settings. The workshop brought together researchers working on different aspects of the analysis and modeling of LDSNs which require a concerted efforts of teams of researchers with close interactions between applied and pure mathematicians, physicists (theoreticians and experimentalists), computational scientists, and engineers. These scientific and engineering communities were represented in Banff by the researchers from Japan, Canada, the USA, Russia, France, Denmark, Germany, and the UK (further details can be found at http://www.m2netlab.wlu.ca/ldsn-banff/). We had four main plenary talks of one hour duration that gave state-of-the-art overviews of the subject from perspectives of applied mathematics (Professor Russel Caflisch of the University of California at Los Angeles), physics (Professor Antti-Pekka Jauho of the Danish Technical University), and computational science and engineering communities (Professor Gerhard Klimeck of Purdue University), as well as from a point of view of experimentalists (Dr Gail Brown of the Materials Lab/Air Force Research Lab at Wright-Patterson AFB). These talks helped identify the areas where joint efforts needed to be directed to, and they set up the scene for further work during the workshop, including discussions at the workshop open problem sessions. All participants

  3. FOREWORD: The 70th birthday of Professor Stig Stenholm The 70th birthday of Professor Stig Stenholm

    NASA Astrophysics Data System (ADS)

    Suominen, Kalle-Antti

    2010-09-01

    information [7] and in Stockholm he had, again, very successful postdocs such as Ulf Leonhardt. Finally, in 2005, Stig Stenholm retired, although he is still active, writing papers, taking part in conferences and making research visits. We honoured his 70th birthday at the CEWQO2009 conference, and hope that the future provides us with further opportunities for such events. Looking at the obituary of Dirk ter Haar, I see that his style with students reminds me of Stig's approach. In my opinion, Stig expects independence and initiative from a student, giving perhaps a broad topic in which the student is expected to find his or her own way, whilst working perhaps with a postdoc. Juha Javanainen has talked about the 'sink or swim' style (not referring to Stig, though). There is a famous series of children's books about Moomin trolls by Tove Jansson (another Swedish-speaking Finn like Stig). In one of them, the Moomin find in early spring a small flower in a patch of land uncovered by snow, pushing its way up. One of them wants to cover it against frost during the night, but another says 'Don't, it'll fare better later if it has some difficulties at first'. At CEWQO2009 Stig gave the full list of his finished PhD students: Rainer Salomaa (1973), Temba Dlodlo (1980), Juha Javanainen (1980), Markus Lindberg (1985), Matti Kaivola (1985), Birger Ståhlberg (1985), Kalle-Antti Suominen (1992), Mackillo Kira (1995), Päivi Törmä (1996), Asta Paloviita (1997), Patrik Öhberg (1998), Martti Havukainen (1999), Erika Andersson (2000), Pawel Piwnicki (2001), Åsa Larson (2001), Markku Jääskeläinen (2003), and Jonas Larson (2005). One should also mention Erkki Kyrölä, who eventually graduated at Rochester and Olli Serimaa, who never graduated but published some important early-stage laser cooling work. As a final note I must mention a passion that Stig and I share, namely books. I have nearly 400 professional physics and mathematics books, but I am certain that the size of Stig

  4. PREFACE: CEWQO Topical Issue CEWQO Topical Issue

    NASA Astrophysics Data System (ADS)

    Bozic, Mirjana; Man'ko, Margarita

    2009-09-01

    Kalle-Antti Suominen (http://www.congress.utu.fi/cewqo2009). The conference site is the new ICT building at chaired by Professor Kalle-Antti Suominen (http://www.congress.utu.fi/cewqo2009, www.congress.utu.fi/cewqo2009). The conference site was the new ICT building at the University of Turku campus area and the Viking Line ferry boat. Turku is the central city of historical Finland established on the mouth of the river Aura in the 13th century. It is the birthplace of Finnish academic life, since the Academy of Turku was established there in 1640. In 2011, Turku will be one of the cultural capitals of Europe. The city has a strong maritime tradition and is shielded from the Baltic sea by a large and beautiful archipelago. The 17th Central European Workshop on Quantum Optics will be held in 2010 in St Andrews, UK. It will be chaired by Professors Ulf Leonhardt and Natalia Korolkova from the School of Physics and Astronomy, University of St Andrews. St Andrews is home to the first university of Scotland, the third-oldest in the English-speaking world, and is the home of golf. It remains a charming, eccentric seaside town that is sufficiently secluded - the ideal place for a stimulating and thought-provoking conference.