Stakeholders’ Perceptions of Agronomic Iodine Biofortification: A SWOT-AHP Analysis in Northern Uganda

PubMed Central

Olum, Solomon; Gellynck, Xavier; Okello, Collins; Webale, Dominic; Odongo, Walter; Ongeng, Duncan

2018-01-01

Agronomic biofortification (i.e., the application of fertilizer to elevate micronutrient concentrations in staple crops) is a recent strategy recommended for controlling Iodine Deficiency Disorders (IDDs). However, its success inevitably depends on stakeholders’ appreciation and acceptance of it. By taking Northern Uganda as a case, this study aimed to capture and compare the perceptions of seven key stakeholder groups with respect to agronomic iodine biofortification. Therefore, we employed a SWOT (Strength, Weaknesses, Opportunities & Threats) analysis in combination with an Analytical Hierarchy Process (AHP). Findings show that stakeholders (n = 56) are generally positive about agronomic iodine biofortification in Uganda, as its strengths and opportunities outweighed weaknesses and threats. Cultural acceptance and effectiveness are considered the most important strengths while the high IDD prevalence rate and the availability of iodine deficient soils are key opportunities for further developing agronomic iodine biofortification. Environmental concerns about synthetic fertilizers as well as the time needed to supply iodine were considered crucial weaknesses. The limited use of fertilizer in Uganda was the main threat. While this study provides insight into important issues and priorities for iodine biofortification technology in Uganda, including differences in stakeholder views, the application of the SWOT-AHP method will guide future researchers and health planners conducting stakeholder analysis in similar domains. PMID:29587370

QTL and QTL x environment effects on agronomic and nitrogen acquisition traits in rice.

PubMed

Senthilvel, Senapathy; Vinod, Kunnummal Kurungara; Malarvizhi, Palaniappan; Maheswaran, Marappa

2008-09-01

Agricultural environments deteriorate due to excess nitrogen application. Breeding for low nitrogen responsive genotypes can reduce soil nitrogen input. Rice genotypes respond variably to soil available nitrogen. The present study attempted quantification of genotype x nitrogen level interaction and mapping of quantitative trait loci (QTLs) associated with nitrogen use efficiency (NUE) and other associated agronomic traits. Twelve parameters were observed across a set of 82 double haploid (DH) lines derived from IR64/Azucena. Three nitrogen regimes namely, native (0 kg/ha; no nitrogen applied), optimum (100 kg/ha) and high (200 kg/ha) replicated thrice were the environments. The parents and DH lines were significantly varying for all traits under different nitrogen regimes. All traits except plant height recorded significant genotype x environment interaction. Individual plant yield was positively correlated with nitrogen use efficiency and nitrogen uptake. Sixteen QTLs were detected by composite interval mapping. Eleven QTLs showed significant QTL x environment interactions. On chromosome 3, seven QTLs were detected associated with nitrogen use, plant yield and associated traits. A QTL region between markers RZ678, RZ574 and RZ284 was associated with nitrogen use and yield. This chromosomal region was enriched with expressed gene sequences of known key nitrogen assimilation genes.

Influence of cultivar and fertilizer approach on curly kale (Brassica oleracea L. var. sabellica). 1. Genetic diversity reflected in agronomic characteristics and phytochemical concentration.

PubMed

Groenbaek, Marie; Jensen, Sidsel; Neugart, Susanne; Schreiner, Monika; Kidmose, Ulla; Kristensen, Hanne Lakkenborg

2014-11-26

The objectives were to investigate if genetic diversity among field-grown traditional and F1 hybrid kale cultivars was reflected in different agronomic characteristics and consequently glucosinolate (GLS) and flavonoid glycoside concentration. This study evaluated how nitrogen and sulfur supply and biomass allocation modified phytochemicals in two experiments with combinations of three cultivars and four N and two S application levels. Results showed less growth, and higher N concentration in the traditional cultivar 'Tiara' was associated with increased indole and total GLSs compared to traditional 'Høj Amager Toftø' and F1 hybrid 'Reflex' cultivars, which exhibited higher yield, lower N concentration, and different biomass allocation. S application increased total GLS concentration, whereas aliphatic GLS percentage decreased when N application increased. Decrease of six 'Reflex' GLSs besides quercetin glycosides and total flavonoid glycosides with increased N indicated higher N responsiveness for 'Reflex'. In conclusion, differences in agronomic characteristics were reflected in diverse phytochemical composition.

Enhanced efficiency fertilisers: a review of formulation and nutrient release patterns.

PubMed

Timilsena, Yakindra Prasad; Adhikari, Raju; Casey, Phil; Muster, Tim; Gill, Harsharn; Adhikari, Benu

2015-04-01

Fertilisers are one of the most important elements of modern agriculture. The application of fertilisers in agricultural practices has markedly increased the production of food, feed, fuel, fibre and other plant products. However, a significant portion of nutrients applied in the field is not taken up by plants and is lost through leaching, volatilisation, nitrification, or other means. Such a loss increases the cost of fertiliser and severely pollutes the environment. To alleviate these problems, enhanced efficiency fertilisers (EEFs) are produced and used in the form of controlled release fertilisers and nitrification/urease inhibitors. The application of biopolymers for coating in EEFs, tailoring the release pattern of nutrients to closely match the growth requirement of plants and development of realistic models to predict the release pattern of common nutrients have been the foci of fertiliser research. In this context, this paper intends to review relevant aspects of new developments in fertiliser production and use, agronomic, economic and environmental drives for enhanced efficiency fertilisers and their formulation process and the nutrient release behaviour. Application of biopolymers and complex coacervation technique for nutrient encapsulation is also explored as a promising technology to produce EEFs. © 2014 Society of Chemical Industry.

[Effects of controlled-release fertilizers on summer maize grain yield, field ammonia volatilization, and fertilizer nitrogen use efficiency].

PubMed

Zhao, Bin; Dong, Shu-Ting; Wang, Kong-Jun; Zhang, Ji-Wang; Liu, Peng

2009-11-01

A field experiment with colophony-coated fertilizer (CRF) and sulfur-coated fertilizer (SCF) showed that under the same application rates of N, P and K, applying CRF and SCF increased the summer maize grain yield by 13.15% and 14.15%, respectively, compared to the application of common compound fertilizer CCF. When the applied amount of CRF and SCF was decreased by 25%, the yield increment was 9.69% and 10.04%, respectively; and when the applied amount of CRF and SCF was decreased by 50%, the yield had less difference with that under CCF application. The field ammonia volatilization rate in treatments CRF and SCF increased slowly, with a peak appeared 7 days later than that in treatment CCF, and the total amount of ammonia volatilization in treatments CRF and SCF was ranged from 0.78 kg N x hm(-2) to 4.43 kg N x hm(-2), with a decrement of 51.34%-91.34% compared to that in treatment CCF. The fertilizer nitrogen use efficiency and agronomic nitrogen use efficiency of CRF and SCF were also significantly higher than those of CCF.

Agronomic viability of New Zealand spinach and kale intercropping.

PubMed

Cecílio, Arthur B; Bianco, Matheus S; Tardivo, Caroline F; Pugina, Gabriel C M

2017-01-01

The intercropping is a production system that aims to provide increased yield with less environmental impact, due to greater efficiency in the use of natural resources and inputs involved in the production process. An experiment was carried out to evaluate the agronomic viability of kale and New Zealand spinach intercropping as a function of the spinach transplanting time. (0, 14, 28, 42, 56, 70, 84 and 98 days after transplanting of the kale). The total yield (TY) and yield per harvest (YH) of the kale in intercropping did not differ from those obtained in monoculture. The spinach TY was influenced by the transplanting time, the earlier the transplanting, the higher the TY. The spinach YH was not influenced by the transplanting time, but rather by the cultivation system. In intercropping, the spinach YH was 13.5% lower than in monoculture. The intercropping was agronomically feasible, since the land use efficiency index, which was not influenced by the transplanting time, had an average value of 1.71, indicating that the intercropping produced 71% more kale and spinach than the same area in monoculture. Competitiveness coefficient, aggressiveness and yield loss values showed that kale is the dominating species and spinach is the dominated.

Enhanced efficiency fertilizers: Effects on agronomic performance of corn in Iowa

USDA-ARS?s Scientific Manuscript database

Management of N in corn (Zea mays L.) production systems attempts to increase crop yields and minimize environment impact. This study evaluated enhanced efficiency fertilizers (EEFs) compared to their non-EEF forms on grain yield and corn biomass at the beginning of the grain-filling period, leaf ch...

Agronomic & entomological results from 7 years of dryland cropping systems research at Briggsdale, Colorado

USDA-ARS?s Scientific Manuscript database

Dryland crop production in the semi-arid Great Plains is limited by both the quantity and timing of precipitation. Sustainable dryland cropping systems maximize precipitation use efficiency by managing precipitation capture, storage, and use. Pest management approaches are also critical for efficie...

IMPROVING BIOMASS LOGISTICS COST WITHIN AGRONOMIC SUSTAINABILITY CONSTRAINTS AND BIOMASS QUALITY TARGETS

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. Richard Hess; Kevin L. Kenney; Christopher T. Wright

Equipment manufacturers have made rapid improvements in biomass harvesting and handling equipment. These improvements have increased transportation and handling efficiencies due to higher biomass densities and reduced losses. Improvements in grinder efficiencies and capacity have reduced biomass grinding costs. Biomass collection efficiencies (the ratio of biomass collected to the amount available in the field) as high as 75% for crop residues and greater than 90% for perennial energy crops have also been demonstrated. However, as collection rates increase, the fraction of entrained soil in the biomass increases, and high biomass residue removal rates can violate agronomic sustainability limits. Advancements inmore » quantifying multi-factor sustainability limits to increase removal rate as guided by sustainable residue removal plans, and mitigating soil contamination through targeted removal rates based on soil type and residue type/fraction is allowing the use of new high efficiency harvesting equipment and methods. As another consideration, single pass harvesting and other technologies that improve harvesting costs cause biomass storage moisture management challenges, which challenges are further perturbed by annual variability in biomass moisture content. Monitoring, sampling, simulation, and analysis provide basis for moisture, time, and quality relationships in storage, which has allowed the development of moisture tolerant storage systems and best management processes that combine moisture content and time to accommodate baled storage of wet material based upon “shelf-life.” The key to improving biomass supply logistics costs has been developing the associated agronomic sustainability and biomass quality technologies and processes that allow the implementation of equipment engineering solutions.« less

Fine-Tuning Tomato Agronomic Properties by Computational Genome Redesign

PubMed Central

Carrera, Javier; Fernández del Carmen, Asun; Fernández-Muñoz, Rafael; Rambla, Jose Luis; Pons, Clara; Jaramillo, Alfonso; Elena, Santiago F.; Granell, Antonio

2012-01-01

Considering cells as biofactories, we aimed to optimize its internal processes by using the same engineering principles that large industries are implementing nowadays: lean manufacturing. We have applied reverse engineering computational methods to transcriptomic, metabolomic and phenomic data obtained from a collection of tomato recombinant inbreed lines to formulate a kinetic and constraint-based model that efficiently describes the cellular metabolism from expression of a minimal core of genes. Based on predicted metabolic profiles, a close association with agronomic and organoleptic properties of the ripe fruit was revealed with high statistical confidence. Inspired in a synthetic biology approach, the model was used for exploring the landscape of all possible local transcriptional changes with the aim of engineering tomato fruits with fine-tuned biotechnological properties. The method was validated by the ability of the proposed genomes, engineered for modified desired agronomic traits, to recapitulate experimental correlations between associated metabolites. PMID:22685389

Biofortification of Cereals With Foliar Selenium and Iodine Could Reduce Hypothyroidism

PubMed Central

Lyons, Graham

2018-01-01

Concurrent selenium and iodine deficiencies are widespread, in both developing and developed countries. Salt iodisation is insufficient to ensure global iodine adequacy, with an estimated one-third of humanity at risk of hypothyroidism and associated iodine deficiency disorders (IDD). Agronomic biofortification of food crops, especially staples such as cereals, which are consumed widely, may be an effective component of a food system strategy to reduce selenium and iodine malnutrition. Iodine and selenium are needed in the optimum intake range for thyroid health, hence joint biofortification makes sense for areas deficient in both. Foliar application is recommended as the most effective, efficient, least wasteful method for selenium and iodine biofortification. Currently, selenium is easier to increase in grain, fruit, and storage roots by this method, being more phloem mobile than iodine. Nevertheless, strategic timing (around heading is usually best), use of surfactants and co-application with potassium nitrate can increase the effectiveness of foliar iodine biofortification. More research is needed on iodine transporters and iodine volatilisation in plants, bioavailability of iodine in biofortified plant products, and roles for nano selenium and iodine in biofortification. For adoption, farmers need an incentive such as access to a premium functional food market, a subsidy or increased grain yield resulting from possible synergies with co-applied fertilisers, enhancers, fungicides, and insecticides. Further research is needed to inform these aspects of foliar agronomic biofortification.

Long-term field phytoextraction of zinc/cadmium contaminated soil by Sedum plumbizincicola under different agronomic strategies.

PubMed

Deng, Lin; Li, Zhu; Wang, Jie; Liu, Hongyan; Li, Na; Wu, Longhua; Hu, Pengjie; Luo, Yongming; Christie, Peter

2016-01-01

In two long-term field experiments the zinc (Zn)/cadmium (Cd) hyperaccumulator Sedum plumbizincicola (S. plumbizincicola) was examined to optimize the phytoextraction of metal contaminated soil by two agronomic strategies of intercropping with maize (Zea mays) and plant densities. Soil total Zn and Cd concentrations decreased markedly after long-term phytoextraction. But shoot biomass and Cd and Zn concentrations showed no significant difference with increasing remediation time. In the intercropping experiment the phytoremediation efficiency in the treatment "S. plumbizincicola intercropped with maize" was higher than in S. plumbizincicola monocropping, and Cd concentrations of corn were below the maximum national limit. In the plant density experiment the phytoremediation efficiency increased with increasing plant density and 440,000 plants ha(-1) gave the maximum rate. These results indicated that S. plumbizincicola at an appropriate planting density and intercropped with maize can achieve high remediation efficiency to contaminated soil without affecting the cereal crop productivity. This cropping system combines adequate agricultural production with soil heavy metal phytoextraction.

Genome-Wide Association Study Identifying Candidate Genes Influencing Important Agronomic Traits of Flax (Linum usitatissimum L.) Using SLAF-seq

PubMed Central

Xie, Dongwei; Dai, Zhigang; Yang, Zemao; Sun, Jian; Zhao, Debao; Yang, Xue; Zhang, Liguo; Tang, Qing; Su, Jianguang

2018-01-01

Flax (Linum usitatissimum L.) is an important cash crop, and its agronomic traits directly affect yield and quality. Molecular studies on flax remain inadequate because relatively few flax genes have been associated with agronomic traits or have been identified as having potential applications. To identify markers and candidate genes that can potentially be used for genetic improvement of crucial agronomic traits, we examined 224 specimens of core flax germplasm; specifically, phenotypic data for key traits, including plant height, technical length, number of branches, number of fruits, and 1000-grain weight were investigated under three environmental conditions before specific-locus amplified fragment sequencing (SLAF-seq) was employed to perform a genome-wide association study (GWAS) for these five agronomic traits. Subsequently, the results were used to screen single nucleotide polymorphism (SNP) loci and candidate genes that exhibited a significant correlation with the important agronomic traits. Our analyses identified a total of 42 SNP loci that showed significant correlations with the five important agronomic flax traits. Next, candidate genes were screened in the 10 kb zone of each of the 42 SNP loci. These SNP loci were then analyzed by a more stringent screening via co-identification using both a general linear model (GLM) and a mixed linear model (MLM) as well as co-occurrences in at least two of the three environments, whereby 15 final candidate genes were obtained. Based on these results, we determined that UGT and PL are candidate genes for plant height, GRAS and XTH are candidate genes for the number of branches, Contig1437 and LU0019C12 are candidate genes for the number of fruits, and PHO1 is a candidate gene for the 1000-seed weight. We propose that the identified SNP loci and corresponding candidate genes might serve as a biological basis for improving crucial agronomic flax traits. PMID:29375606

Genome-Wide Association Study Identifying Candidate Genes Influencing Important Agronomic Traits of Flax (Linum usitatissimum L.) Using SLAF-seq.

PubMed

Xie, Dongwei; Dai, Zhigang; Yang, Zemao; Sun, Jian; Zhao, Debao; Yang, Xue; Zhang, Liguo; Tang, Qing; Su, Jianguang

2017-01-01

Flax ( Linum usitatissimum L.) is an important cash crop, and its agronomic traits directly affect yield and quality. Molecular studies on flax remain inadequate because relatively few flax genes have been associated with agronomic traits or have been identified as having potential applications. To identify markers and candidate genes that can potentially be used for genetic improvement of crucial agronomic traits, we examined 224 specimens of core flax germplasm; specifically, phenotypic data for key traits, including plant height, technical length, number of branches, number of fruits, and 1000-grain weight were investigated under three environmental conditions before specific-locus amplified fragment sequencing (SLAF-seq) was employed to perform a genome-wide association study (GWAS) for these five agronomic traits. Subsequently, the results were used to screen single nucleotide polymorphism (SNP) loci and candidate genes that exhibited a significant correlation with the important agronomic traits. Our analyses identified a total of 42 SNP loci that showed significant correlations with the five important agronomic flax traits. Next, candidate genes were screened in the 10 kb zone of each of the 42 SNP loci. These SNP loci were then analyzed by a more stringent screening via co-identification using both a general linear model (GLM) and a mixed linear model (MLM) as well as co-occurrences in at least two of the three environments, whereby 15 final candidate genes were obtained. Based on these results, we determined that UGT and PL are candidate genes for plant height, GRAS and XTH are candidate genes for the number of branches, Contig1437 and LU0019C12 are candidate genes for the number of fruits, and PHO1 is a candidate gene for the 1000-seed weight. We propose that the identified SNP loci and corresponding candidate genes might serve as a biological basis for improving crucial agronomic flax traits.

Development of a multispectral imagery device devoted to weed detection

NASA Astrophysics Data System (ADS)

Vioix, Jean-Baptiste; Douzals, Jean-Paul; Truchetet, Frederic; Navar, Pierre

2003-04-01

Multispectral imagery is a large domain with number of practical applications: thermography, quality control in industry, food science and agronomy, etc. The main interest is to obtain spectral information of the objects for which reflectance signal can be associated with physical, chemical and/or biological properties. Agronomic applications of multispectral imagery generally involve the acquisition of several images in the wavelengths of visible and near infrared. This paper will first present different kind of multispectral devices used for agronomic issues and will secondly introduce an original multispectral design based on a single CCD. Third, early results obtained for weed detection are presented.

[Effects of phosphorus fertilization on yield of winter wheat and utilization of soil nitrogen].

PubMed

Xing, Dan; Li, Shu-wen; Xia, Bo; Wen, Hong-da

2015-02-01

In order to evaluate the threshold of phosphorus (P) application rate and improve the utilization efficiency of fertilizers in Baoding region of Hebei Province, a field experiment was conducted to examine the impacts of P fertilization on wheat yield, soil NO(3-)-N and nitrogen use efficiency. Results showed that, compared with the CK (P0), all treatments with P application (P1, 120 kg · hm(-2); P2, 240 kg · hm(-2) and P3, 480 kg · hm(-2)) increased the plant height, flag leaf areas and total leaf areas per plant of winter wheat, which was conducive to the accumulation of photosynthetic products. In addition, P application increased the spike number, kernels per spike and yield of winter wheat but slightly decreased the grain mass per 1000 seeds. Of the P-fertilized treatments, P2 had the highest wheat yield of 6102 kg · hm(-2), which was similar to P1 but significantly greater than those of P0 and P3. Furthermore, P fertilization reduced the NO(3-)-N content in top soil layer although the total accumulation of NO3- was still rather high. The N grain production efficiencies (GPE(N)) and N uptake efficiencies (UE(N)) of P1 and P2 were similar but greater than the other treatments. The use efficiency (UR(P)) , agronomic efficiency (AE(P)) and partial productivity of P fertilizer (PFP(P)) in P1 were significantly greater than P2 and P3. In conclusion, the P application rate of 120 kg · hm(-2) (P1) in this study could be an appropriate threshold in Baoding, Hebei, from the aspects of wheat yield, nitrogen and phosphate use efficiencies and accumulation of soil NO3-.

Efficiency of irrigation water application in sugarcane cultivation in Pakistan.

PubMed

Watto, Muhammad Arif; Mugera, Amin W

2015-07-01

Diminishing irrigation water supplies are threatening the sustainability of irrigated agriculture in Pakistan. Within the context of dwindling water resources and low agricultural water productivity, it is imperative to improve efficiency in agricultural production and to make efficient use of available water resources. This study employs a non-parametric approach to estimate the extent of technical and irrigation water efficiency in sugarcane cultivation in Pakistan. The mean technical efficiency score is 0.96 for tube-well owners whereas it is 0.94 for water buyers. The mean irrigation water efficiency score is 0.86 for tube-well owners whereas it is 0.72 for water buyers. We find that across all farms, 59% of the tube-well owners and 45% of the water buyers are fully technically efficient, whereas only 36% of the tube-well owners and 30% of the water buyer are fully efficient in irrigation water use. This study finds that sugarcane growers are operating at fairly high technical efficiency levels. But, there is considerable potential to improve irrigation water efficiency. This study proposes expanding the role of agricultural extension services from merely agronomic grounds to guide farmers to undertake cost benefit analysis of the available production technology, would help achieve higher efficiency levels. © 2014 Society of Chemical Industry.

A computational interactome for prioritizing genes associated with complex agronomic traits in rice (Oryza sativa).

PubMed

Liu, Shiwei; Liu, Yihui; Zhao, Jiawei; Cai, Shitao; Qian, Hongmei; Zuo, Kaijing; Zhao, Lingxia; Zhang, Lida

2017-04-01

Rice (Oryza sativa) is one of the most important staple foods for more than half of the global population. Many rice traits are quantitative, complex and controlled by multiple interacting genes. Thus, a full understanding of genetic relationships will be critical to systematically identify genes controlling agronomic traits. We developed a genome-wide rice protein-protein interaction network (RicePPINet, http://netbio.sjtu.edu.cn/riceppinet) using machine learning with structural relationship and functional information. RicePPINet contained 708 819 predicted interactions for 16 895 non-transposable element related proteins. The power of the network for discovering novel protein interactions was demonstrated through comparison with other publicly available protein-protein interaction (PPI) prediction methods, and by experimentally determined PPI data sets. Furthermore, global analysis of domain-mediated interactions revealed RicePPINet accurately reflects PPIs at the domain level. Our studies showed the efficiency of the RicePPINet-based method in prioritizing candidate genes involved in complex agronomic traits, such as disease resistance and drought tolerance, was approximately 2-11 times better than random prediction. RicePPINet provides an expanded landscape of computational interactome for the genetic dissection of agronomically important traits in rice. © 2017 The Authors The Plant Journal © 2017 John Wiley & Sons Ltd.

Effectiveness and efficiency of potassium fertilizer application to increase the production and quality of rice in entisols

NASA Astrophysics Data System (ADS)

Hartati, S.; Suryono; Purnomo, D.

2018-03-01

The study aimed to determine the appropriate dose of K-type fertilizer on the production and quality of IR-64 rice varieties in Entisols. The study was conducted on Entisols, Nglarang, Basin, Kebonarum, Klaten, Central Java, Indonesia. Randomized Complete Block Design (RCBD) was used with 2 factors and three replicates. Factor I: types of K fertilizer: KCl, ZK, and KNO3. Factor II: K fertilizer dose consists of four levels: 0, 50, 100 and 150 kg K2O ha-1. The results showed that the type of K fertilizer KCl, ZK, and KNO3 gave similar effect on growth and yield of rice variety IR 64 on Entisols. Dose of K fertilizer increased the growth and yield of rice but an increased dose provides improved meaningful results. K fertilizer with a dose of 50 kg ha-1 K2O is the most efficient, with the agronomic efficiency for dry grain highest yield of 13.6 kg/kg K2O achieved by ZK fertilizer.

Advances in biotechnology and genomics of switchgrass

PubMed Central

2013-01-01

Switchgrass (Panicum virgatum L.) is a C4 perennial warm season grass indigenous to the North American tallgrass prairie. A number of its natural and agronomic traits, including adaptation to a wide geographical distribution, low nutrient requirements and production costs, high water use efficiency, high biomass potential, ease of harvesting, and potential for carbon storage, make it an attractive dedicated biomass crop for biofuel production. We believe that genetic improvements using biotechnology will be important to realize the potential of the biomass and biofuel-related uses of switchgrass. Tissue culture techniques aimed at rapid propagation of switchgrass and genetic transformation protocols have been developed. Rapid progress in genome sequencing and bioinformatics has provided efficient strategies to identify, tag, clone and manipulate many economically-important genes, including those related to higher biomass, saccharification efficiency, and lignin biosynthesis. Application of the best genetic tools should render improved switchgrass that will be more economically and environmentally sustainable as a lignocellulosic bioenergy feedstock. PMID:23663491

Improving phosphorus uptake and wheat productivity by phosphoric acid application in alkaline calcareous soils.

PubMed

Akhtar, Muhammad; Yaqub, Muhammad; Naeem, Asif; Ashraf, Muhammad; Hernandez, Vicente Espinosa

2016-08-01

Low phosphorus (P) efficiency from existing granular fertilisers necessitates searching for efficient alternatives to improve wheat productivity in calcareous soil. Multi-location trials have shown that phosphoric acid (PA) produced 16% higher wheat grain over commercial P fertilisers, i.e. diammonium phosphate (DAP) and triple superphosphate (TSP). Methods of P application significantly influenced grain yield and the efficiency of methods was observed in the order: PA placement below seed > PA, DAP or TSP fertigation > DAP or TSP broadcast. The sub-surface application of PA produced highest grain yields (mean of all rates), i.e. 4669, 4158 and 3910 kg ha(-1) in Bagh, Bhalwal and Shahpur soil series, respectively. Phosphoric acid at 66 kg P2 O5 ha(-1) was found more effective in increasing gain yield over that of control. Trend in grain P uptake was found similar to that observed for grain yield. Maximum P uptake by grain was recorded at the highest P rate and the lowest at zero P. The significant increase in P uptake with P rates was generally related to the increase in yield rather than its concentration in grain. Phosphorus agronomic efficiency (PAE) and phosphorus recovery efficiency (PRE) were found higher at lower P rate (44 kg P2 O5 ha(-1) ) and decreased with P application. However, PA applied by the either method resulted in higher PAE and PRE compared to DAP and TSP. Phosphoric acid is suggested as an efficient alternative to commercial granular P fertilisers for wheat production in alkaline calcareous soils. © 2015 Society of Chemical Industry. © 2015 Society of Chemical Industry.

Review in Strengthening Technology for Phytoremediation of Soil Contaminated by Heavy Metals

NASA Astrophysics Data System (ADS)

Wu, Chishan; Zhang, Xingfeng; Deng, Yang

2017-07-01

In view of current problems of phytoremediation technology, this paper summarizes research progress for phytoremediation technology of heavy metal contaminated soil. When the efficiency of phytoremediation may not meet the demand in practice of contaminated soil or water. Effective measures should be taken to improve the plant uptake and translocation. This paper focuses on strengthening technology mechanism, which can not only increase the biomass of plant and hyperaccumulators, but also enhance the tolerance and resistance to heavy metals, and application effect of phytoremediation, including agronomic methods, earthworm bioremediation and chemical induction technology. In the end of paper, deficiencies of each methods also be discussed, methods of strengthening technology for phytoremediation need further research.

Use of introgression lines to determine the ecophysiological basis for changes in water use efficiency and yield in California processing tomatoes

Treesearch

Felipe H. Barrios-Masias; Roger T. Chetelat; Nancy E. Grulke; Louise E. Jackson

2014-01-01

Field and greenhouse studies examined the effects of growth habit and chloroplast presence in leaf veins for their role in increasing agronomic water use efficiency and yields of California modern processing tomato (Solanum lycopersicum L.) cultivars. Five introgression lines (ILs), made with Solanum pennellii Cor. in the...

Subsurface application enhances benefits of manure redistribution

USDA-ARS?s Scientific Manuscript database

Sustainable nutrient management requires redistribution of livestock manure from nutrient-excess areas to nutrient-deficit areas. Field experiments were conducted to assess agronomic and environmental effects of different poultry litter application methods (surface vs. subsurface) and timings (fall ...

Narrowing the agronomic yield gap with improved nitrogen use efficiency: a modeling approach.

PubMed

Ahrens, T D; Lobell, D B; Ortiz-Monasterio, J I; Li, Y; Matson, P A

2010-01-01

Improving nitrogen use efficiency (NUE) in the major cereals is critical for more sustainable nitrogen use in high-input agriculture, but our understanding of the potential for NUE improvement is limited by a paucity of reliable on-farm measurements. Limited on-farm data suggest that agronomic NUE (AE(N)) is lower and more variable than data from trials conducted at research stations, on which much of our understanding of AE(N) has been built. The purpose of this study was to determine the magnitude and causes of variability in AE(N) across an agricultural region, which we refer to as the achievement distribution of AE(N). The distribution of simulated AE(N) in 80 farmers' fields in an irrigated wheat system in the Yaqui Valley, Mexico, was compared with trials at a local research center (International Wheat and Maize Improvement Center; CIMMYT). An agroecosystem simulation model WNMM was used to understand factors controlling yield, AE(N), gaseous N emissions, and nitrate leaching in the region. Simulated AE(N) in the Yaqui Valley was highly variable, and mean on-farm AE(N) was 44% lower than trials with similar fertilization rates at CIMMYT. Variability in residual N supply was the most important factor determining simulated AE(N). Better split applications of N fertilizer led to almost a doubling of AE(N), increased profit, and reduced N pollution, and even larger improvements were possible with technologies that allow for direct measurement of soil N supply and plant N demand, such as site-specific nitrogen management.

The Application of Soil-Agroclimatic Index for Assessing the Agronomic Potential of Arable Lands in the Forest-Steppe Zone of Russia

NASA Astrophysics Data System (ADS)

Bulgakov, D. S.; Rukhovich, D. I.; Shishkonakova, E. A.; Vil'chevskaya, E. V.

2018-04-01

An assessment of the agronomic potential of arable lands in the forest-steppe zone of Russia (by the example of separate soil-agronomic districts) on the basis of the soil-agroclimatic index developed under the supervision of I.I. Karmanov is considered. The agricultural areas (64) separated on the territory of Russia and characterizing soil-agroclimatic conditions for cultivation of major and accompanying crops are differentiated into soil-agronomic districts (SADs) with due account for the administrative division of the country. A large diversity of agroclimatic and agronomical conditions creates the prerequisites for the inclusion of administrative regions into different SADs. The SADs concept implies a detailed analysis of information on the soil properties, geomorphic conditions, and farming conditions. The agronomic potential for major crops in the key SADs in the forest-steppe zone of the East European Plain (Voronezh and Penza oblasts) is high, though it is 25-30% lower than that in the North Caucasus (for winter wheat, sugar beet, sunflower, and spring barley) and in Kaliningrad oblast (for oats). In Western Siberia (Tyumen, Omsk, and Novosibirsk oblasts) and Eastern Siberia (Krasnoyarsk region and Irkutsk oblast), the agronomic potential of spring crops (wheat, barley, and oats) is only utilized by 35-45% in comparison with their European analogues. In the Far East with its monsoon climate and soil conditions (meadow podbels, brown forest soils), the crops characteristic of the European forest-steppe (soybean, rice, sugar beet) and the Trans-Ural forest-steppe (spring wheat) are cultivated. Their biological potential is utilized by only 50-60% in comparison with the European analogues. The materials of this study give us information on the degree of correspondence between the soilagroclimatic potential of the territory and the biological potential of cultivated crops. This is important in the context of improving the natural-agricultural zoning of Russia and its information support.

Propagation Techniques and Agronomic Requirements for the Cultivation of Barbados Aloe (Aloe vera (L.) Burm. F.)—A Review

PubMed Central

Cristiano, Giuseppe; Murillo-Amador, Bernardo; De Lucia, Barbara

2016-01-01

Barbados aloe (Aloe vera (L.) Burm. F.) has traditionally been used for healing in natural medicine. However, aloe is now attracting great interest in the global market due to its bioactive chemicals which are extracted from the leaves and used in industrial preparations for pharmaceutical, cosmetic, and food products. Aloe originated from tropical and sub-tropical Africa, but it is also now cultivated in warm climatic areas of Asia, Europe, and America. In this review, the most important factors affecting aloe production are described. We focus on propagation techniques, sustainable agronomic practices and efficient post harvesting and processing systems. PMID:27721816

[Effects of phosphorus fertilization on biomass accumulation and phosphorus use efficiency of trellis-cultivated melon].

PubMed

Chen, Bo-lang; Wu, Hai-hua; Luo, Jia; Hao, Li-na; Qi, Xiao-chen; Zhao, Ku

2016-02-01

A field experiment applying six rates of P fertilizer (P2O5, 0, 150, 225, 300, 375 and 450 kg . hm-2, respectively) was conducted to investigate the effects of P fertilization on dry matter accumulation (DMA), P uptake and accumulation (PUA) and P use efficiency (PUE) of trellis-cultivated melon. Results showed that, P application increased DMA and PUA, for 150 and 225 kg P2O5 . hm-2 treatments, being 19.9% and 26.3%, 23.0% and 26.3% higher than that in no P fertilizer treatment at fruiting stage. With plant growth, DMA and PUA of different organs and the whole plant gradually increased. DMA and PUA were mainly distributed in the leaves during the early stage of the growth and in the fruit during the latter stage. P application decreased the recovery efficiency of applied P (REP), agronomic efficiency of applied P (AEP) and partial factor productivity of applied P (PFP). At 150 kg . hm-2 P application rate, the maximum REP, AEP and PFP were 11.1%, 152.9 kg . kg-1 and 476.3 kg . kg-1, respectively. Compared with no P fertilizer treatment, melon yields of 150 and 225 kg P2O5 . hm2 treatments increased by 47.3% and 39.7%, respectively. In summary, the vining stage and fruit expanding stage were the key periods for P application in trellis-cultivated melon system. Based on synthesized economic yield and P fertilizer efficiency, the recommendation of P fertilizer for trellis-cultivated melon is 150-225 kg P2O5 . hm-2 under the climatic condition of the experimental area.

[Effects of organic-inorganic mixed fertilizers on rice yield and nitrogen use efficiency].

PubMed

Zhang, Xiao-li; Meng, Lin; Wang, Qiu-jun; Luo, Jia; Huang, Qi-wei; Xu, Yang-chun; Yang, Xing-ming; Shen, Qi-rong

2009-03-01

A field experiment was carried to study the effects of organic-inorganic mixed fertilizers on rice yield, nitrogen (N) use efficiency, soil N supply, and soil microbial diversity. Rapeseed cake compost (RCC), pig manure compost (PMC), and Chinese medicine residue compost (MRC) were mixed with chemical N, P and K fertilizers. All the treatments except CK received the same rate of N. The results showed that all N fertilizer application treatments had higher rice yield (7918.8-9449.2 kg x hm(-2)) than the control (6947.9 kg x hm(-2)). Compared with that of chemical fertilizers (CF) treatment (7918.8 kg x hm(-2)), the yield of the three organic-inorganic mixed fertilizers treatments ranged in 8532.0-9449.2 kg x hm(-2), and the increment was 7.7%-19.3%. Compared with treatment CF, the treatments of organic-inorganic mixed fertilizers were significantly higher in N accumulation, N transportation efficiency, N recovery rate, agronomic N use efficiency, and physiological N use efficiency. These mixed fertilizers treatments promoted rice N uptake and improved soil N supply, and thus, increased N use efficiency, compared with treatments CF and CK. Neighbor joining analysis indicated that soil bacterial communities in the five treatments could be classified into three categories, i.e., CF and CK, PMC and MRC, and RCC, implying that the application of exogenous organic materials could affect soil bacterial communities, while applying chemical fertilizers had little effect on them.

Unmanned Aerial Vehicles for High-Throughput Phenotyping and Agronomic Research

PubMed Central

Shi, Yeyin; Thomasson, J. Alex; Murray, Seth C.; Pugh, N. Ace; Rooney, William L.; Shafian, Sanaz; Rajan, Nithya; Rouze, Gregory; Morgan, Cristine L. S.; Neely, Haly L.; Rana, Aman; Bagavathiannan, Muthu V.; Henrickson, James; Bowden, Ezekiel; Valasek, John; Olsenholler, Jeff; Bishop, Michael P.; Sheridan, Ryan; Putman, Eric B.; Popescu, Sorin; Burks, Travis; Cope, Dale; Ibrahim, Amir; McCutchen, Billy F.; Baltensperger, David D.; Avant, Robert V.; Vidrine, Misty; Yang, Chenghai

2016-01-01

Advances in automation and data science have led agriculturists to seek real-time, high-quality, high-volume crop data to accelerate crop improvement through breeding and to optimize agronomic practices. Breeders have recently gained massive data-collection capability in genome sequencing of plants. Faster phenotypic trait data collection and analysis relative to genetic data leads to faster and better selections in crop improvement. Furthermore, faster and higher-resolution crop data collection leads to greater capability for scientists and growers to improve precision-agriculture practices on increasingly larger farms; e.g., site-specific application of water and nutrients. Unmanned aerial vehicles (UAVs) have recently gained traction as agricultural data collection systems. Using UAVs for agricultural remote sensing is an innovative technology that differs from traditional remote sensing in more ways than strictly higher-resolution images; it provides many new and unique possibilities, as well as new and unique challenges. Herein we report on processes and lessons learned from year 1—the summer 2015 and winter 2016 growing seasons–of a large multidisciplinary project evaluating UAV images across a range of breeding and agronomic research trials on a large research farm. Included are team and project planning, UAV and sensor selection and integration, and data collection and analysis workflow. The study involved many crops and both breeding plots and agronomic fields. The project’s goal was to develop methods for UAVs to collect high-quality, high-volume crop data with fast turnaround time to field scientists. The project included five teams: Administration, Flight Operations, Sensors, Data Management, and Field Research. Four case studies involving multiple crops in breeding and agronomic applications add practical descriptive detail. Lessons learned include critical information on sensors, air vehicles, and configuration parameters for both. As the first and most comprehensive project of its kind to date, these lessons are particularly salient to researchers embarking on agricultural research with UAVs. PMID:27472222

A Comparison of Traditional Worksheet and Linear Programming Methods for Teaching Manure Application Planning.

ERIC Educational Resources Information Center

Schmitt, M. A.; And Others

1994-01-01

Compares traditional manure application planning techniques calculated to meet agronomic nutrient needs on a field-by-field basis with plans developed using computer-assisted linear programming optimization methods. Linear programming provided the most economical and environmentally sound manure application strategy. (Contains 15 references.) (MDH)

Evaluation and comparison of insulation efficiency of three enhancer-blocking insulators in plants

USDA-ARS?s Scientific Manuscript database

Enhancer-promoter interactions potentially compromise the precise engineering of gene function and agronomically important traits in crops, which demands the adoption of strong, effective enhancer-blocking insulators to block such communication in a transgene construct. In this study, we evaluated ...

Agricultural practices to improve nitrogen use efficiency through the use of arbuscular mycorrhizae: Basic and agronomic aspects.

PubMed

Verzeaux, Julien; Hirel, Bertrand; Dubois, Frédéric; Lea, Peter J; Tétu, Thierry

2017-11-01

Nitrogen cycling in agroecosystems is heavily dependent upon arbuscular mycorrhizal fungi (AMF) present in the soil microbiome. These fungi develop obligate symbioses with various host plant species, thus increasing their ability to acquire nutrients. However, AMF are particularly sensitive to physical, chemical and biological disturbances caused by human actions that limit their establishment. For a more sustainable agriculture, it will be necessary to further investigate which agricultural practices could be favorable to maximize the benefits of AMF to improve crop nitrogen use efficiency (NUE), thus reducing nitrogen (N) fertilizer usage. Direct seeding, mulch-based cropping systems prevent soil mycelium disruption and increase AMF propagule abundance. Such cropping systems lead to more efficient root colonization by AMF and thus a better establishment of the plant/fungal symbiosis. In addition, the use of continuous cover cropping systems can also enhance the formation of more efficient interconnected hyphal networks between mycorrhizae colonized plants. Taking into account both fundamental and agronomic aspects of mineral nutrition by plant/AMF symbioses, we have critically described, how improving fungal colonization through the reduction of soil perturbation and maintenance of an ecological balance could be helpful for increasing crop NUE. Copyright © 2017 Elsevier B.V. All rights reserved.

The fate of nitrogen affected by biochar and fertilizer source

USDA-ARS?s Scientific Manuscript database

Continuous improvement of nitrogen (N) use efficiency (NUE) and minimizing environmental loss is necessary to address the issues related to N fertilizer use in agronomic systems. The objective of this research was to determine the effectiveness of biochar amendment and fertilizer source on NUE impro...

Breakthrough in chloroplast genetic engineering of agronomically important crops

PubMed Central

Daniell, Henry; Kumar, Shashi; Dufourmantel, Nathalie

2012-01-01

Chloroplast genetic engineering offers several unique advantages, including high-level transgene expression, multi-gene engineering in a single transformation event and transgene containment by maternal inheritance, as well as a lack of gene silencing, position and pleiotropic effects and undesirable foreign DNA. More than 40 transgenes have been stably integrated and expressed using the tobacco chloroplast genome to confer desired agronomic traits or express high levels of vaccine antigens and biopharmaceuticals. Despite such significant progress, this technology has not been extended to major crops. However, highly efficient soybean, carrot and cotton plastid transformation has recently been accomplished through somatic embryogenesis using species-specific chloroplast vectors. This review focuses on recent exciting developments in this field and offers directions for further research and development. PMID:15866001

Mining conifers’ mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform

USDA-ARS?s Scientific Manuscript database

Next-generation sequencing (NGS) technologies are revolutionizing both medical and biological research through generation of massive SNP data sets for identifying heritable genome variation underlying key traits, from rare human diseases to important agronomic phenotypes in crop species. We evaluate...

Targeted and efficient transfer of multiple value-added genes into wheat varieties

USDA-ARS?s Scientific Manuscript database

With an objective to optimize an approach to transfer multiple value added genes to a wheat variety while maintaining and improving agronomic performance, two alleles with mutations in the acetolactate synthase (ALS) gene located on wheat chromosomes 6B and 6D providing tolerance to imidazolinone (I...

A STUDY OF LAND APPLICATION OF ANAEROBICALLY DIGESTED BIOSOLIDS

EPA Science Inventory

A field-scale research project was conducted in 2004-2005 to evaluate land application of anaerobically digested biosolids at agronomic levels. Biosolids had not been applied to this land previously. For this study, biosolids wee applied in a 100-m diameter circle by a side dis...

Multimedia Sampling During The Application Of Biosolids On A Land Test Site (Presentation)

EPA Science Inventory

The goal of this research study was to evaluate air and soil sampling methods and analytical techniques for commercial land application of biosolids. Biosolids, were surface applied at agronomic rates to an agricultural field. During the period of August 2004 to January 2005, 3...

LegumeDB1 bioinformatics resource: comparative genomic analysis and novel cross-genera marker identification in lupin and pasture legume species.

PubMed

Moolhuijzen, P; Cakir, M; Hunter, A; Schibeci, D; Macgregor, A; Smith, C; Francki, M; Jones, M G K; Appels, R; Bellgard, M

2006-06-01

The identification of markers in legume pasture crops, which can be associated with traits such as protein and lipid production, disease resistance, and reduced pod shattering, is generally accepted as an important strategy for improving the agronomic performance of these crops. It has been demonstrated that many quantitative trait loci (QTLs) identified in one species can be found in other plant species. Detailed legume comparative genomic analyses can characterize the genome organization between model legume species (e.g., Medicago truncatula, Lotus japonicus) and economically important crops such as soybean (Glycine max), pea (Pisum sativum), chickpea (Cicer arietinum), and lupin (Lupinus angustifolius), thereby identifying candidate gene markers that can be used to track QTLs in lupin and pasture legume breeding. LegumeDB is a Web-based bioinformatics resource for legume researchers. LegumeDB analysis of Medicago truncatula expressed sequence tags (ESTs) has identified novel simple sequence repeat (SSR) markers (16 tested), some of which have been putatively linked to symbiosome membrane proteins in root nodules and cell-wall proteins important in plant-pathogen defence mechanisms. These novel markers by preliminary PCR assays have been detected in Medicago truncatula and detected in at least one other legume species, Lotus japonicus, Glycine max, Cicer arietinum, and (or) Lupinus angustifolius (15/16 tested). Ongoing research has validated some of these markers to map them in a range of legume species that can then be used to compile composite genetic and physical maps. In this paper, we outline the features and capabilities of LegumeDB as an interactive application that provides legume genetic and physical comparative maps, and the efficient feature identification and annotation of the vast tracks of model legume sequences for convenient data integration and visualization. LegumeDB has been used to identify potential novel cross-genera polymorphic legume markers that map to agronomic traits, supporting the accelerated identification of molecular genetic factors underpinning important agronomic attributes in lupin.

Properties of biochar derived from wood and high-nutrient biomasses with the aim of agronomic and environmental benefits.

PubMed

Domingues, Rimena R; Trugilho, Paulo F; Silva, Carlos A; Melo, Isabel Cristina N A de; Melo, Leônidas C A; Magriotis, Zuy M; Sánchez-Monedero, Miguel A

2017-01-01

Biochar production and use are part of the modern agenda to recycle wastes, and to retain nutrients, pollutants, and heavy metals in the soil and to offset some greenhouse gas emissions. Biochars from wood (eucalyptus sawdust, pine bark), sugarcane bagasse, and substances rich in nutrients (coffee husk, chicken manure) produced at 350, 450 and 750°C were characterized to identify agronomic and environmental benefits, which may enhance soil quality. Biochars derived from wood and sugarcane have greater potential for improving C storage in tropical soils due to a higher aromatic character, high C concentration, low H/C ratio, and FTIR spectra features as compared to nutrient-rich biochars. The high ash content associated with alkaline chemical species such as KHCO3 and CaCO3, verified by XRD analysis, made chicken manure and coffee husk biochars potential liming agents for remediating acidic soils. High Ca and K contents in chicken manure and coffee husk biomass can significantly replace conventional sources of K (mostly imported in Brazil) and Ca, suggesting a high agronomic value for these biochars. High-ash biochars, such as chicken manure and coffee husk, produced at low-temperatures (350 and 450°C) exhibited high CEC values, which can be considered as a potential applicable material to increase nutrient retention in soil. Therefore, the agronomic value of the biochars in this study is predominantly regulated by the nutrient richness of the biomass, but an increase in pyrolysis temperature to 750°C can strongly decrease the adsorptive capacities of chicken manure and coffee husk biochars. A diagram of the agronomic potential and environmental benefits is presented, along with some guidelines to relate biochar properties with potential agronomic and environmental uses. Based on biochar properties, research needs are identified and directions for future trials are delineated.

Properties of biochar derived from wood and high-nutrient biomasses with the aim of agronomic and environmental benefits

PubMed Central

Trugilho, Paulo F.; Silva, Carlos A.; de Melo, Isabel Cristina N. A.; Melo, Leônidas C. A.; Magriotis, Zuy M.; Sánchez-Monedero, Miguel A.

2017-01-01

Biochar production and use are part of the modern agenda to recycle wastes, and to retain nutrients, pollutants, and heavy metals in the soil and to offset some greenhouse gas emissions. Biochars from wood (eucalyptus sawdust, pine bark), sugarcane bagasse, and substances rich in nutrients (coffee husk, chicken manure) produced at 350, 450 and 750°C were characterized to identify agronomic and environmental benefits, which may enhance soil quality. Biochars derived from wood and sugarcane have greater potential for improving C storage in tropical soils due to a higher aromatic character, high C concentration, low H/C ratio, and FTIR spectra features as compared to nutrient-rich biochars. The high ash content associated with alkaline chemical species such as KHCO3 and CaCO3, verified by XRD analysis, made chicken manure and coffee husk biochars potential liming agents for remediating acidic soils. High Ca and K contents in chicken manure and coffee husk biomass can significantly replace conventional sources of K (mostly imported in Brazil) and Ca, suggesting a high agronomic value for these biochars. High-ash biochars, such as chicken manure and coffee husk, produced at low-temperatures (350 and 450°C) exhibited high CEC values, which can be considered as a potential applicable material to increase nutrient retention in soil. Therefore, the agronomic value of the biochars in this study is predominantly regulated by the nutrient richness of the biomass, but an increase in pyrolysis temperature to 750°C can strongly decrease the adsorptive capacities of chicken manure and coffee husk biochars. A diagram of the agronomic potential and environmental benefits is presented, along with some guidelines to relate biochar properties with potential agronomic and environmental uses. Based on biochar properties, research needs are identified and directions for future trials are delineated. PMID:28493951

EcoTurf - a case study: genetic variation and agronomic potential of bermudagrass (Cynodon spp.) germplasm collected from Australian biodiversity

USDA-ARS?s Scientific Manuscript database

Australian Cynodon germplasm has not been comprehensively exploited for bermudagrass improvement. In this paper we will describe ‘EcoTurf’ a four year (2007-2011) project to develop water and nutrient use efficient bermudagrasses from Australian biodiversity. We describe the sampling strategies of A...

Evaluation of agronomic and economic benefits of using RTK-GPS-based auto-steer guidance systems for peanut digging operations

USDA-ARS?s Scientific Manuscript database

Increasing the peanut (Arachis hypogea L.) digger efficiency by accurate placement over the target rows could minimize damaged pods and yield losses. Producers have traditionally relied solely on tractor operator skills to harvest peanuts. However, as peanut production has shifted to new growing reg...

Agronomic and water quality impacts of incorporating polyacrylamide in furrow irrigation water in Arkansas cotton -- 2014

USDA-ARS?s Scientific Manuscript database

The combined erosion-halting and infiltration-increasing effects of PAM appeared to be an ideal practice for Midsouth cotton producers interested in improving irrigation efficiency and nutrient management; however, there has been limited research to evaluate PAM in the Midsouth. The objective of thi...

Application of remote sensing in crop growth simulation and an ensembles approach to reduce model uncertainties

NASA Astrophysics Data System (ADS)

Setiyono, T. D.; Nelson, A.; Ravis, J.; Maunahan, A.; Villano, L.; Li, T.; Bouman, B.

2012-12-01

A semi-empirical model derived from the water-cloud model was used to convert synthetic- aperture radar (SAR) backscattering data into LAI. The SAR-based LAI at early rice growth stages were in a close agreement (90%) with LAI derived from MODIS data for the same study location in Nueva Ecija, Philippines. ORYZA2000 simulated rice yield of 4.5 Mg ha-1 for the 2008 wet season in Nueva Ejica, Philippines when using LAI inputs derived from SAR data, which is closer to the observed yield of 3.9 Mg ha-1, whereas simulated yield without SAR-derived LAI inputs was 5.4 Mg ha-1. The dynamic water and nitrogen balances were accounted in these simulations based on site-specific soil properties and actual fertilizer N and water management. The use of remote sensing data was promising for model application to approximate actual growth conditions and to compensate for limitations in the model due to relevant underlining processes absent in model formulations such as detailed tillering, leaf shading effect, etc., and also limiting factors not accounted in the model such as biotic factors and abiotic factors other than water and N shortages. This study also demonstrated the use an ensembles approach for provincial level rice yield estimation in the Philippines. Such ensembles approach involved statistical classifications of agronomic management settings into 25% percentile, median, and 75% levels followed by generation of factorial combinations. For irrigated lowland system, 4 factors were considered that include transplanting date, plant density, fertilizer N rate, and amount of irrigation water. For rainfed lowland system, there were 3 agronomic management factors (transplanting date, plant density, fertilizer N) and 1 soil parameter (depth of ground water table). These 4 management/soil factors and 3 statistical levels resulted in 81 total factorial combinations representing simulation scenarios for each area of interest (province in the Philippines) and water environments (irrigated vs. rainfed). Finally a normal distribution was assumed and applied to the simulations outputs. This ensembles approach provided an efficient and yet effective method of aggregating point-based crop model results into a larger spatial level of interest. Lack of access to accurate model parameters (e.g. depth of ground water table) could be solved with this approach. The use of process-based crop growth model was critical because the ultimate aim of this study was not just to establish a reliable rice yield estimation system but also to allow yield estimation outputs explainable by the underlining agronomic practices such as transplanting date, fertilizer N application, and water management.

Use of Desired Student Outcomes in Devising Agronomic Curricula.

ERIC Educational Resources Information Center

Grabau, L. J.

1990-01-01

Four models which illustrate potential orientations for baccalaureate programs in agronomy are presented. Included are Technical Training; Information Transfer; Principles Application; and Systems Agronomy. Strengths and weaknesses of each program are discussed. (CW)

Tropical legume crop rotation and nitrogen fertilizer effects on agronomic and nitrogen efficiency of rice.

PubMed

Rahman, Motior M; Islam, Aminul M; Azirun, Sofian M; Boyce, Amru N

2014-01-01

Bush bean, long bean, mung bean, and winged bean plants were grown with N fertilizer at rates of 0, 2, 4, and 6 g N m(-2) preceding rice planting. Concurrently, rice was grown with N fertilizer at rates of 0, 4, 8, and 12 g N m(-2). No chemical fertilizer was used in the 2nd year of crop to estimate the nitrogen agronomic efficiency (NAE), nitrogen recovery efficiency (NRE), N uptake, and rice yield when legume crops were grown in rotation with rice. Rice after winged bean grown with N at the rate of 4 g N m(-2) achieved significantly higher NRE, NAE, and N uptake in both years. Rice after winged bean grown without N fertilizer produced 13-23% higher grain yield than rice after fallow rotation with 8 g N m(-2). The results revealed that rice after winged bean without fertilizer and rice after long bean with N fertilizer at the rate of 4 g N m(-2) can produce rice yield equivalent to that of rice after fallow with N fertilizer at rates of 8 g N m(-2). The NAE, NRE, and harvest index values for rice after winged bean or other legume crop rotation indicated a positive response for rice production without deteriorating soil fertility.

Is the inherent potential of maize roots efficient for soil phosphorus acquisition?

PubMed

Deng, Yan; Chen, Keru; Teng, Wan; Zhan, Ai; Tong, Yiping; Feng, Gu; Cui, Zhenling; Zhang, Fusuo; Chen, Xinping

2014-01-01

Sustainable agriculture requires improved phosphorus (P) management to reduce the overreliance on P fertilization. Despite intensive research of root adaptive mechanisms for improving P acquisition, the inherent potential of roots for efficient P acquisition remains unfulfilled, especially in intensive agriculture, while current P management generally focuses on agronomic and environmental concerns. Here, we investigated how levels of soil P affect the inherent potential of maize (Zea mays L.) roots to obtain P from soil. Responses of root morphology, arbuscular mycorrhizal colonization, and phosphate transporters were characterized and related to agronomic traits in pot and field experiments with soil P supply from deficiency to excess. Critical soil Olsen-P level for maize growth approximated 3.2 mg kg(-1), and the threshold indicating a significant environmental risk was about 15 mg kg(-1), which represented the lower and upper levels of soil P recommended in current P management. However, most root adaptations involved with P acquisition were triggered when soil Olsen-P was below 10 mg kg(-1), indicating a threshold for maximum root inherent potential. Therefore, to maintain efficient inherent potential of roots for P acquisition, we suggest that the target upper level of soil P in intensive agriculture should be reduced from the environmental risk threshold to the point maximizing the inherent potential of roots.

Is the Inherent Potential of Maize Roots Efficient for Soil Phosphorus Acquisition?

PubMed Central

Deng, Yan; Chen, Keru; Teng, Wan; Zhan, Ai; Tong, Yiping; Feng, Gu; Cui, Zhenling; Zhang, Fusuo; Chen, Xinping

2014-01-01

Sustainable agriculture requires improved phosphorus (P) management to reduce the overreliance on P fertilization. Despite intensive research of root adaptive mechanisms for improving P acquisition, the inherent potential of roots for efficient P acquisition remains unfulfilled, especially in intensive agriculture, while current P management generally focuses on agronomic and environmental concerns. Here, we investigated how levels of soil P affect the inherent potential of maize (Zea mays L.) roots to obtain P from soil. Responses of root morphology, arbuscular mycorrhizal colonization, and phosphate transporters were characterized and related to agronomic traits in pot and field experiments with soil P supply from deficiency to excess. Critical soil Olsen-P level for maize growth approximated 3.2 mg kg−1, and the threshold indicating a significant environmental risk was about 15 mg kg−1, which represented the lower and upper levels of soil P recommended in current P management. However, most root adaptations involved with P acquisition were triggered when soil Olsen-P was below 10 mg kg−1, indicating a threshold for maximum root inherent potential. Therefore, to maintain efficient inherent potential of roots for P acquisition, we suggest that the target upper level of soil P in intensive agriculture should be reduced from the environmental risk threshold to the point maximizing the inherent potential of roots. PMID:24594677

Nitrate and Nitrogen Oxides: Sources, Health Effects and Their Remediation.

PubMed

Hakeem, Khalid Rehman; Sabir, Muhammad; Ozturk, Munir; Akhtar, Mohd Sayeed; Ibrahim, Faridah Hanum

Increased use of nitrogenous (N) fertilizers in agriculture has significantly altered the global N-cycle because they release nitrogenous gases of environmental concerns. The emission of nitrous oxide (N 2 O) contributes to the global greenhouse gas accumulation and the stratospheric ozone depletion. In addition, it causes nitrate leaching problem deteriorating ground water quality. The nitrate toxicity has been reported in a number of studies showing the health hazards like methemoglobinemia in infants and is a potent cause of cancer. Despite these evident negative environmental as well as health impacts, consumption of N fertilizer cannot be reduced in view of the food security for the teeming growing world population. Various agronomic and genetic modifications have been practiced to tackle this problem. Some agronomic techniques adopted include split application of N, use of slow-release fertilizers, nitrification inhibitors and encouraging the use of organic manure over chemical fertilizers. As a matter of fact, the use of chemical means to remediate nitrate from the environment is very difficult and costly. Particularly, removal of nitrate from water is difficult task because it is chemically non-reactive in dilute aqueous solutions. Hence, the use of biological means for nitrate remediation offers a promising strategy to minimize the ill effects of nitrates and nitrites. One of the important goals to reduce N-fertilizer application can be effectively achieved by choosing N-efficient genotypes. This will ensure the optimum uptake of applied N in a balanced manner and exploring the molecular mechanisms for their uptake as well as metabolism in assimilatory pathways. The objectives of this paper are to evaluate the interrelations which exist in the terrestrial ecosystems between the plant type and characteristics of nutrient uptake and analyze the global consumption and demand for fertilizer nitrogen in relation to cereal production, evaluate the various methods used to determine nitrogen use efficincy (NUE), determine NUE for the major cereals grown across large agroclimatic regions, determine the key factors that control NUE, and finally analyze various strategies available to improve the use efficiency of fertilizer nitrogen.

Application of ATAD technology for digesting sewage sludge in small towns: Operation and costs.

PubMed

Martín, M A; Gutiérrez, M C; Dios, M; Siles, J A; Chica, A F

2018-06-01

In an economic context marked by increasing energy costs and stricter legislation regarding the landfill disposal of wastewater treatment plant (WWTP) sewage sludge, and where biomethanization is difficult to implement in small WWTPs, an efficient alternative is required to manage this polluting waste. This study shows that autothermal thermophilic aerobic digestion (ATAD) is a feasible technique for treating sewage sludge in small- and medium-sized towns. The experiments were carried out at pilot scale on a cyclical basis and in continuous mode for nine months. The main results showed an optimal hydraulic retention time of 7 days, which led to an organic matter removal of 34%. The sanitized sludge meets the microbial quality standards for agronomic application set out in the proposed European sewage sludge directive. An economic assessment for the operation of ATAD technology was carried out, showing a treatment cost of €6.5/ton for dewatered sludge. Copyright © 2018 Elsevier Ltd. All rights reserved.

Agronomic assessment of pyrolysed food waste digestate for sandy soil management.

PubMed

Opatokun, Suraj Adebayo; Yousef, Lina F; Strezov, Vladimir

2017-02-01

The digestate (DFW) of an industrial food waste treatment plant was pyrolysed for production of biochar for its direct application as bio-fertilizer or soil enhancer. Nutrient dynamics and agronomic viability of the pyrolysed food waste digestate (PyD) produced at different temperatures were evaluated using germination index (GI), water retention/availability and mineral sorption as indicators when applied on arid soil. The pyrolysis was found to enrich P, K and other micronutrients in the biochar at an average enrichment factor of 0.87. All PyD produced at different temperatures indicated significantly low phytotoxicity with GI range of 106-168% and an average water retention capacity of 40.2%. Differential thermogravimetric (DTG) thermographs delineated the stability of the food waste digestate pyrolysed at 500 °C (PyD500) against the degradation of the digestate food waste despite the latter poor nutrient sorption potential. Plant available water in soil is 40% when treated with 100 g of digestate per kg soil, whereas PyD500 treated soil indicated minimal effect on plant available water, even with high application rates. However, the positive effects of PyD on GI and the observed enrichment in plant macro and micronutrients suggest potential agronomic benefits for PyD use, in addition to the benefits from energy production from DFW during the pyrolysis process. Copyright © 2016 Elsevier Ltd. All rights reserved.

Hormone and pathogen content in soil after litter applications

USDA-ARS?s Scientific Manuscript database

Poultry litter applications at agronomic rates established for a crop’s P or N requirements may contain as much as 385 mg estradiol ha-1, 605 mg testosterone ha-1, 4.4(10)12 Escherichia coli cells ha-1, and 4.4(10)13 fecal enterococci cells ha-1. Field experiments from small plot- to small watershed...

78 FR 727 - Public Notice of Proposed Reissuance of the NPDES General Permits for Facilities/Operations That...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-01-04

... Means of Land Application, Landfill, and Surface Disposal in the EPA Region 8 AGENCY: Environmental..., treat, and/or use/dispose of sewage sludge by means of land application, landfill, and surface disposal... landfill. The purpose is to require agronomic soil sampling for calculating the proper amount of sewage...

A weed compaction roller system for use with mechanical herbicide application

Treesearch

Adam H. Wiese; Daniel A. Netzer; Don E. Riemenschneider; Ronald S., Jr. Zalesny

2006-01-01

We designed, constructed, and field-tested a versatile and unique weed compaction roller system that can be used with mechanical herbicide application for invasive weed control in tree plantations, agronomic settings, and areas where localized flora and fauna are in danger of elimination from the landscape. The weed compaction roller system combined with herbicide...

Synchrony of net nitrogen mineralization and maize nitrogen uptake following applications of composted and fresh swine manure in the Midwest U.S.

USDA-ARS?s Scientific Manuscript database

Understanding how the quality of organic soil amendments affects the synchrony of nitrogen (N) mineralization and plant N uptake is critical for optimal agronomic N management and environmental protection. Composting solid livestock manures prior to soil application has been promoted to increase N s...

Subsurface application enhances benefits of manure redistribution

USDA-ARS?s Scientific Manuscript database

Sustainable nutrient management requires redistribution of livestock manure from nutrient-excess areas to nutrient-deficit areas. Field experiments were conducted to assess agronomic (i.e., corn yield) and environmental (i.e., ammonia volatilization and surface nutrient losses) effects of different ...

Impact of Seasonal Forecasts on Agriculture

NASA Astrophysics Data System (ADS)

Aldor-Noiman, S. C.

2014-12-01

More extreme and volatile weather conditions are a threat to U.S. agricultural productivity today, as multiple environmental conditions during the growing season impact crop yields. That's why farmers' agronomic management decisions are dominated by consideration for near, medium and seasonal forecasts of climate. The Climate Corporation aims to help farmers around the world protect and improve their farming operations by providing agronomic decision support tools that leverage forecasts on multiple timescales to provide valuable insights directly to farmers. In this talk, we will discuss the impact of accurate seasonal forecasts on major decisions growers face each season. We will also discuss assessment and evaluation of seasonal forecasts in the context of agricultural applications.

[Effect of long-term application of NPK fertilizer on maize yield and yellow soil nutrients sustainability in Guizhou, China].

PubMed

Liu, Yan Ling; Li, Yu; Zhang, Ya Rong; Huang, Xing Cheng; Zhang, Wen An; Jiang, Tai Ming

2017-11-01

A long-term fertilization field experiment was conducted to investigate the effect of nitrogen (N), phosphorus (P), and potassium (K) fertilizer on maize relative yield, yield-increasing effect and the changes of nutrients in yellow soil in Guizhou Province. Five fertilizer combinations were evaluated, including balanced fertilization (NPK) and nutrient deficiency treatments (N, NK, NP, and PK). The maize relative yield, contribution efficiency of N, P, K fertilizer application, sustainability index of soil N, P, K nutrients, and other indicators were measured. The results revealed that the balanced fertilization (NPK) significantly increased maize yield, and the average yield under each treatment ranked as: NPK>NP>NK>PK>CK. The contribution efficiency and agronomic efficiency of N, P, K fertilizer application was N>P>K. The fertilization dependence was ranked as: combined application of N, P and K>N>P>K. But in the lack of P treatment (NK), the maize relative yield significantly decreased at a speed of 1.4% per year, with the contribution efficiency and fertilization dependence of applied P significantly increasing at a speed of 2.3% per year and 1.4% per year, respectively. Over time, the effect of P fertilizer on maize yield gradually became equal to that of N fertilizer. The pH and soil organic matter content were the lowest in the P-lack treatment (NK), while they were higher in the N-lack treatment (PK). The application of chemical P significantly improved the sustainability index of soil P, but the application of chemical N and K did not significantly change the sustainability index of soil N and K nutrients compared to the N- and K-lack treatments, respectively. In summary, the use of balanced fertilizer application is critical for achieving high maize yield in typical yellow soil regions in Guizhou Province. P and N fertilizers are equally important for improving maize yield, and long-term application of unbalanced chemical fertilizer, especially the lack of P, would not benefit the sustainable use of nutrients in yellow soil.

Soil nitrogen balance assessment and its application for sustainable agriculture and environment.

PubMed

Roy, Rabindra Nath; Misra, Ram Vimal

2005-12-01

Soil nitrogen balance assessment (SNBA) serves as an effective tool for estimating the magnitude of nitrogen loss/gain of the agro-eco systems and to appraise their sustainability. SNBA brings forth awareness of soil fertility problems, besides providing information relating to the resultant release of nitrogen into the environment consequent to agricultural practices. Quantitative information relating to nitrogen escape into the environment through such exercises can be gainfully utilized for identification of causative factors, enhancing fertilizer use efficiency and formulating programmes aimed at plugging N leakages. An overview of nitrogen balance approaches and methodologies is presented. A deeper understanding and insight into the agro-eco systems provided by the SNBA exercises can lay the basis for the formulation of effective agronomic interventions and policies aimed at promoting sustainable agriculture and a benign environment.

Soil nitrogen balance assessment and its application for sustainable agriculture and environment.

PubMed

Roy, Rabindra Nath; Misra, Ram Vimal

2005-09-01

Soil nitrogen balance assessment (SNBA) serves as an effective tool for estimating the magnitude of nitrogen loss/gain of the agro-eco systems and to appraise their sustainability. SNBA brings forth awareness of soil fertility problems, besides providing information relating to the resultant release of nitrogen into the environment consequent to agricultural practices. Quantitative information relating to nitrogen escape into the environment through such exercises can be gainfully utilized for identification of causative factors, enhancing fertilizer use efficiency and formulating programmes aimed at plugging N leakages. An overview of nitrogen balance approaches and methodologies is presented. A deeper understanding and insight into the agro-eco systems provided by the SNBA exercises can lay the basis for the formulation of effective agronomic interventions and policies aimed at promoting sustainable agriculture and a benign environment.

Biomass Logistics

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. Richard Hess; Kevin L. Kenney; William A. Smith

Equipment manufacturers have made rapid improvements in biomass harvesting and handling equipment. These improvements have increased transportation and handling efficiencies due to higher biomass densities and reduced losses. Improvements in grinder efficiencies and capacity have reduced biomass grinding costs. Biomass collection efficiencies (the ratio of biomass collected to the amount available in the field) as high as 75% for crop residues and greater than 90% for perennial energy crops have also been demonstrated. However, as collection rates increase, the fraction of entrained soil in the biomass increases, and high biomass residue removal rates can violate agronomic sustainability limits. Advancements inmore » quantifying multi-factor sustainability limits to increase removal rate as guided by sustainable residue removal plans, and mitigating soil contamination through targeted removal rates based on soil type and residue type/fraction is allowing the use of new high efficiency harvesting equipment and methods. As another consideration, single pass harvesting and other technologies that improve harvesting costs cause biomass storage moisture management challenges, which challenges are further perturbed by annual variability in biomass moisture content. Monitoring, sampling, simulation, and analysis provide basis for moisture, time, and quality relationships in storage, which has allowed the development of moisture tolerant storage systems and best management processes that combine moisture content and time to accommodate baled storage of wet material based upon “shelf-life.” The key to improving biomass supply logistics costs has been developing the associated agronomic sustainability and biomass quality technologies and processes that allow the implementation of equipment engineering solutions.« less

Agronomic efficiency of phosphate fertilizers produced by the re-use of a metallurgical acid residue.

PubMed

Barreto, Matheus Sampaio Carneiro; Mattiello, Edson Marcio; Santos, Wedisson Oliveira; Melo, Leônidas Carrijo Azevedo; Vergütz, Leonardus; Novais, Roberto Ferreira

2018-02-15

The production of fertilizers with industrial wastes reduces the environmental impacts of waste disposal and improves environmental sustainability by generating added-value products. Our objective with this study was to evaluate the agronomic performance and potential soil/plant contamination with heavy metals of alternative phosphate (P) fertilizers, obtained from the acidulation of phosphate rocks (PR) by a metallurgical acidic waste. Seven P fertilizers were evaluated: three PR (Araxá, Patos, and Bayóvar), their respective acidulated products (PAPR), and triple superphosphate fertilizer (TSP). A greenhouse trial was carried out to test the agronomic performances of fertilizers in a sequentially cultivated maize-soybean-white oat. The reaction of PR with acid waste was effective to increase their solubility and improve plant yield and P uptake compared to their natural PR. There was a cumulative recovery by plants of 1.4 and 8.1% of added P via PR and PAPR, respectively. No increase in heavy metal (Cd, Pb, Cr, and Ni) availability in soil or accumulation in shoots was observed, indicating that the PAPR were environmentally safe. The usage of acid waste to produce P fertilizers therefore represents a strategic way to employ marginal products for the production of fertilizers. Copyright © 2017 Elsevier Ltd. All rights reserved.

Composition of entomopathogenic fungus and method of production and application for insect control

USDA-ARS?s Scientific Manuscript database

Microsclerotia of entomopathogenic fungi including Metarhizium and Lecanicillium species are produced using various production methods such as liquid culture fermentation. These microsclerotia can be dried with various agronomic carriers to produce viable, microsclerotia-containing compositions with...

Bio-effectors from waste materials as growth promoters, an agronomic and metabolomic study

NASA Astrophysics Data System (ADS)

Alwanney, Deaa; Chami, Ziad Al; Angelica De Pascali, Sandra; Cavoski, Ivana; Fanizzi, Francesco Paolo

2014-05-01

Nowadays, improving plant performance by providing growth promoters is a main concern of the organic agriculture. As a consequence of increased food demands, more efficient and alternatives of the current plant nutrition strategies are becoming urgent. Recently, a novel concept "bio-effectors" raised on to describe a group of products that are able to improve plant performance and do not belong to fertilizers or pesticides. Agro-Food processing residues are promising materials as bio-effector. Three plant-derived materials: brewers' spent grain (BSG), fennel processing residues (FPR) and lemon processing residues (LPR) were chosen as bio-effector candidates. Plant-derived materials were characterized in term of total macro and micronutrients content. Green extraction methodology and solvent choice (aqueous; ethanol; and aqueous: ethanol mixture 1:1) was based on the extraction yield as main factor. Optimum extracts, to be used on the tomato test plant, were determined using phytotoxicity test (seed germination test) as main constraint. Thereafter, selected extracts were characterized and secondary metabolites profiling were detected by NMR technique. Selected extracts were applied on tomato in a growth chamber at different doses in comparison to humic-like substances as positive control (Ctrl+) and to a Hoagland solution as negative control (Ctrl-). At the end of the experiment, agronomical parameters were determined and NMR-metabolomic profiling were conducted on tomato seedlings. Results are summarized as follow: (i) raw showed an interesting content, either at nutritional or biological level; (ii) aqueous extraction resulted higher yield than other used solvent; (iii) at high extraction ratio (1:25 for BSG; 1:100 for FPR; and 1:200 for LPR) aqueous extracts were not phytotoxic on the tomato test plant; (iv) all aqueous extract are differently rich in nutrients, aminoacids, sugars and low molecular weight molecules; (v) all extract exhibited a growth promotion at low application doses; (vi) regarding plant metabolomics study, all treatments showed a different metabolites in respect to Ctrl- treatment. BSG, LPR and Ctrl+ treatments had similar metabolic profile. Finally, Metabolomic study provided an efficient tool and a key reporter about bio-effectors impact on plants. The visible effect and measured agronomical parameters was emphasized and demonstrated by metabolic profiling which offer insights into the affected plant metabolic pathways. As conclusion, our results supported the prediction that plant derived materials may interfere again in plant production regardless their nutritional content. Keywords: Bio-effectors; Metabolomics; Nuclear Magnetic Resonance (NMR); Barley; Fennel; Lemon; Tomato.

The interplay between the effectiveness of the grass-endophyte mutualism and the genetic variability of the host plant

PubMed Central

Gundel, Pedro E; Omacini, Marina; Sadras, Victor O; Ghersa, Claudio M

2010-01-01

Neotyphodium endophytic fungi, the asexual state of Epichloë species, protect cool-season grasses against stresses. The outcomes of Neotyphodium-grass symbioses are agronomically relevant as they may affect the productivity of pastures. It has been suggested that the mutualism is characteristic of agronomic grasses and that differential rates of gene flow between both partners’ populations are expected to disrupt the specificity of the association and, thus, the mutualism in wild grasses. We propose that compatibility is necessary but not sufficient to explain the outcomes of Neotyphodium-grass symbiosis, and advance a model that links genetic compatibility, mutualism effectiveness, and endophyte transmission efficiency. For endophytes that reproduce clonally and depend on allogamous hosts for reproduction and dissemination, we propose that this symbiosis works as an integrated entity where gene flow promotes its fitness and evolution. Compatibility between the host plant and the fungal endophyte would be high in genetically close parents; however, mutualism effectiveness and transmission efficiency would be low in fitness depressed host plants. Increasing the genetic distance of mating parents would increase mutualism effectiveness and transmission efficiency. This tendency would be broken when the genetic distance between parents is high (out-breeding depression). Our model allows for testable hypotheses that would contribute to understand the coevolutionary origin and future of the endophyte-grass mutualism. PMID:25567945

Tropical Legume Crop Rotation and Nitrogen Fertilizer Effects on Agronomic and Nitrogen Efficiency of Rice

PubMed Central

Rahman, Motior M.; Islam, Aminul M.; Azirun, Sofian M.; Boyce, Amru N.

2014-01-01

Bush bean, long bean, mung bean, and winged bean plants were grown with N fertilizer at rates of 0, 2, 4, and 6 g N m−2 preceding rice planting. Concurrently, rice was grown with N fertilizer at rates of 0, 4, 8, and 12 g N m−2. No chemical fertilizer was used in the 2nd year of crop to estimate the nitrogen agronomic efficiency (NAE), nitrogen recovery efficiency (NRE), N uptake, and rice yield when legume crops were grown in rotation with rice. Rice after winged bean grown with N at the rate of 4 g N m−2 achieved significantly higher NRE, NAE, and N uptake in both years. Rice after winged bean grown without N fertilizer produced 13–23% higher grain yield than rice after fallow rotation with 8 g N m−2. The results revealed that rice after winged bean without fertilizer and rice after long bean with N fertilizer at the rate of 4 g N m−2 can produce rice yield equivalent to that of rice after fallow with N fertilizer at rates of 8 g N m−2. The NAE, NRE, and harvest index values for rice after winged bean or other legume crop rotation indicated a positive response for rice production without deteriorating soil fertility. PMID:24971378

Economic Analysis of Nitrate Source Reductions in California Agriculture

NASA Astrophysics Data System (ADS)

Medellin-Azuara, J.; Howitt, R.; Rosenstock, T.; Harter, T.; Pettygrove, S. G.; Dzurella, K.; Lund, J. R.

2011-12-01

We present an analytical approach to assess the economic impact of improving nitrogen management practices in California agriculture. We employ positive mathematical programming to calibrate crop production to base input information. The production function representation is a nested constant elasticity of substitution with two nests: one for applied water and one for applied nitrogen. The first nest accounts for the tradeoffs between irrigation efficiency and capital investments in irrigation technology. The second nest represents the tradeoffs between nitrogen application efficiency and the marginal costs of improving nitrogen efficiency. In the production function nest, low elasticities of substitution and water and nitrogen stress constraints keep agricultural crop yields constant despite changes in nitrogen management practices. We use the Tulare Basin, and the Salinas Valley in California's Central Valley and Central Coast respectively as our case studies. Preliminary results show that initial reductions of 25% in nitrogen loads to groundwater may not impose large costs to agricultural crop production as substitution of management inputs results in only small declines in net revenue from farming and total land use. Larger reductions in the nitrogen load to groundwater of 50% imposes larger marginal costs for better nitrogen management inputs and reductions in the area of lower valued crops grown in the study areas. Despite the shortage of data on quantitative effects of improved nitrogen efficiency; our results demonstrate the potential of combining economic and agronomic data into a model that can reflect differences in cost and substitutabilty in nitrogen application methods, that can be used to reduce the quantity of nitrogen leaching into groundwater.

Nitrous oxide and ammonia emissions from injected and broadcast applied dairy slurry

USDA-ARS?s Scientific Manuscript database

Trade-offs associated with surface application or injection of manure pose important environmental and agronomic concerns. Manure injection can conserve nitrogen (N) by decreasing ammonia volatilization. However, the injection band also creates conditions, which potentially favor nitrous oxide produ...

Seed germination of Calendula officinalis 'Carola' in response to temperature

USDA-ARS?s Scientific Manuscript database

Calendula (Calendula officinalis 'Carola') is a potential agronomic oilseed crop with application in the paint, coating, and cosmetic industry. Calendula has historically been used for herbal medicinal purposes and an ornamental plant. With the discovery that calendula seeds contain high concentrati...

A high plant density reduces the ability of maize to use soil nitrogen

PubMed Central

Yan, Peng; Pan, Junxiao; Zhang, Wenjie; Shi, Junfang; Chen, Xinping; Cui, Zhenling

2017-01-01

Understanding the physiological changes associated with high grain yield and high N use efficiency (NUE) is important when increasing the plant density and N rate to develop optimal agronomic management. We tested the hypothesis that high plant densities resulting in crowding stress reduce the ability of plants to use the N supply post-silking, thus decreasing the grain yield and NUE. In 2013 and 2014, a field experiment, with five N-application rates and three plant densities (6.0, 7.5, and 9.0 plants m–2), was conducted in the North China Plain (NCP). The calculated maximum grain yield and agronomic use efficiency (AEN) at a density of 7.5 plants m–2 were 12.4 Mg ha–1 and 39.3 kg kg–1, respectively, which were significantly higher than the values obtained at densities of 6.0 (11.3 Mg ha–1 and 30.2 kg kg–1) and 9.0 plant m–2 (11.7 Mg ha–1 and 27.8 kg kg–1). A high plant density of 9.0 plants m–2 decreased the post-silking N accumulation, leaf N concentration and net photosynthesis, which reduced the post-silking dry matter production, resulting in a low yield and NUE. Although a relatively low grain yield was observed at a density of 9.0 plants m–2, the optimal N rate increased from 150 to 186 kg N ha-1 at a density of 7.5 plants m–2. These results indicate that high plant densities with crowding stress reduce the ability of plants to use soil N during the post-silking period, and high rate of N fertilizer was needed to increase grain yield. We conclude that selecting the appropriate plant density combined with optimal N management could increase grain yields and the NUE in the NCP. PMID:28234970

Effect of low dosage biochar amendment on plant physiology parameters of sunflowers

NASA Astrophysics Data System (ADS)

María De la Rosa, José; Paneque, Marina; Franco-Navarro, Juan D.; Colmenero-Flores, José Manuel; Knicker, Heike

2017-04-01

Four different biochars were used as organic ameliorants in a typical agricultural soil of the Mediterranean region a (Calcic Cambisol). This field study was performed with plants of sunflower (Helianthus annuus L.) at the experimental station "La Hampa", located in the Guadalquivir river valley (SW Spain). The soil was amended with doses equivalent to 1.5 and 15 t ha-1 of the four biochars in two independent plantations. In addition, un-amended plots were prepared for comparison purposes 1. This study showed that the amendment with 1.5 t biochar ha-1 did not modify significantly soil properties, or the agronomic productivity of sunflowers. However, in spite of this low dose of biochar, positive effects on plant physiology were observed. The efficiency of Photosystem-II (quantum yield (QYPSII)), is a stress marker, related to the water status of the plant, and is reduced under drought stress. The QYPSII values of the plants grown with 1.5 t biochar ha-1 were higher than in the control and ranged between 72 and 77%. Values between 70 and 80% correspond to non-stressed (well-watered) sunflower plants. Biochar reduced stomatal conductance (gs, leaf transpiration) in both treatments. Therefore, the dependence of agronomic productivity on biochar dose was not observed, since both doses resulted in similar gs reductions. In C3 plants, such as sunflower, an increase of leaf area (LA) is usually associated to a decrease of gs caused by a reduction of stomatal frequency and increases the water use efficiency and drought tolerance 2. However, here no clear correlation could be established between biochar-induced LA stimulation and gs response after application of biochar. Thus, gs reduction was evident but not a consequence of LA increase. We hypothesize that biochar addition to soils alters anatomical and/or physiological parameters of the plants that in turn reduces stomatal conductance and increases water use efficiency of sunflower plants. After the last rain, increasing drought and water deficit resulted in a progressive reduction of gs in control plants. The more efficient use of water increased drought tolerance of amended plants. Therefore, we propose that biochar amendment provides protection from water deficit stress, a finding that points to the agronomic relevance of biochar use for Mediterranean rainfed crops. Acknowledgements: J.M. de la Rosa and Marina Paneque thank the Spanish Ministry of Economy and Competitiveness (MINECO) for his "Ramón y Cajal" post-doctoral contract and her FPU fellowship (FPU 13/05831) respectively. MINECO, the European Regional Development Fund and Marie Curie Integration Grants of 7th European Community Framework Programme are thanked for the financial support (CGL2015-64811-P, PCIG12-GA-2012-333784). References: 1Paneque M., De la Rosa J.M., Franco-Navarro J., Colmenero-Flores JM., Knicker H., 2016. CATENA. 147, 280-287. 2 Franco-Navarro J.D., Brumós J., Rosales M.A., Cubero-Font P., Talón M., Colmenero-Flores J.M., 2016. J. Exp. Bot. 67, 873-891.

Alteration of biochar characteristics through Post Production Treatments

NASA Astrophysics Data System (ADS)

Schmidt, Hans-Peter; Kammann, Claudia; Glaser, Bruno

2013-04-01

The application of pure, untreated biochar to temperate soils does not lead to substantial increase in soil fertility and plant growth. Moreover, the application of 10 tonnes or more of biochar per hectare is not economically viable on most farms. To be more efficient in improving soil fertility, increasing SOM and ecosystem services, new methods of using biochar in farm settings need to be developed. To improve the effect of biochar on plant growth, biochar can be enhanced by (1) adding nutrients, (2) inoculating it with beneficial microorganisms, (3) improving its surface reactivity and thus its sorption dynamic, (4) increasing its porous volume, and/or (5) fostering the creation of biochar-mineral-organic complexes. These supplementary biochar enhancements can be achieved through different methods of feedstock blending and biochar post-production treatment which can be classified according to the resulting surface alteration of biochar: 1. Addition of nutrients, MOs, minerals in liquid solution which get soaked into the biochar pores without or with only slight surface alteration, resulting in enriched biochar. 2. Physico-chemical activation (treatment with acids, vapours, toasting with minerals …) resulting in alteration of the surface, pore volume and functional groups. 3. Bio-chemical activation through the interaction of biochar with organic compounds, minerals, nutrients and microorganisms in a biological very active environment, resulting in the complexation of biochar, minerals and organic compounds. Whereas physico-chemical activation is a highly technical process and has to be done by professional biochar producers, bio-chemical activation and enrichment can be done very efficiently by the farmer himself. On-farm enrichment and activation of biochar help to close the organic nutrient cycles of the farm, improving agronomic system efficiency and thus becoming economically viable. Adding biochar to highly labile organic matter like manure, sludge or compost improves decomposition and complexation, and helps to stabilize their nutrients and carbon. The combination of biochar and lacto-acid-bacteria in silage, feed, bedding and liquid manure treatment decreases methane and ammonia emissions, increases the feed-energy balance, and boosts animal health. On every step of this cascading use of biochar in animal husbandry, the biochar becomes more oxidized, more activated and more enriched with nutrients. When finally applied to the soil, biochar acts as carrier for nutrients and thus works to improve soil fertility. Much more research is needed in the field of biochar post-treatment and into each of the different possible farm uses. Nevertheless, sufficient serious research has already been done and published, enabling us to judge the importance of post-treating biochar to improve its agronomic performance and value.

A liquid bioplastic formulation for film coating of agronomic seeds

USDA-ARS?s Scientific Manuscript database

Interest in industrial and domestic applications of biodegradable plastics from renewable sources is increasing, but their use in agriculture is still limited (e.g., mulching films, plant pots, and plant clips). However, a sprayable liquid bioplastic formulation was recently evaluated for applicati...

Agronomic Weeds.

ERIC Educational Resources Information Center

Hartwig, Nathan L.

This agriculture extension service publication from Pennsylvania State University examines agronomic weed problems and control. Contents include a listing of the characteristics of weeds, a section on herbicides, and a section on the important weeds of agronomic crops in Pennsylvania. The herbicide section discusses systemic herbicides, contact…

Positive matrix factorization as source apportionment of soil lead and cadmium around a battery plant (Changxing County, China).

PubMed

Xue, Jian-long; Zhi, Yu-you; Yang, Li-ping; Shi, Jia-chun; Zeng, Ling-zao; Wu, Lao-sheng

2014-06-01

Chemical compositions of soil samples are multivariate in nature and provide datasets suitable for the application of multivariate factor analytical techniques. One of the analytical techniques, the positive matrix factorization (PMF), uses a weighted least square by fitting the data matrix to determine the weights of the sources based on the error estimates of each data point. In this research, PMF was employed to apportion the sources of heavy metals in 104 soil samples taken within a 1-km radius of a lead battery plant contaminated site in Changxing County, Zhejiang Province, China. The site is heavily contaminated with high concentrations of lead (Pb) and cadmium (Cd). PMF successfully partitioned the variances into sources related to soil background, agronomic practices, and the lead battery plants combined with a geostatistical approach. It was estimated that the lead battery plants and the agronomic practices contributed 55.37 and 29.28%, respectively, for soil Pb of the total source. Soil Cd mainly came from the lead battery plants (65.92%), followed by the agronomic practices (21.65%), and soil parent materials (12.43%). This research indicates that PMF combined with geostatistics is a useful tool for source identification and apportionment.

Capturing pair-wise epistatic effects associated with three agronomic traits in barley.

PubMed

Xu, Yi; Wu, Yajun; Wu, Jixiang

2018-04-01

Genetic association mapping has been widely applied to determine genetic markers favorably associated with a trait of interest and provide information for marker-assisted selection. Many association mapping studies commonly focus on main effects due to intolerable computing intensity. This study aims to select several sets of DNA markers with potential epistasis to maximize genetic variations of some key agronomic traits in barley. By doing so, we integrated a MDR (multifactor dimensionality reduction) method with a forward variable selection approach. This integrated approach was used to determine single nucleotide polymorphism pairs with epistasis effects associated with three agronomic traits: heading date, plant height, and grain yield in barley from the barley Coordinated Agricultural Project. Our results showed that four, seven, and five SNP pairs accounted for 51.06, 45.66 and 40.42% for heading date, plant height, and grain yield, respectively with epistasis being considered, while corresponding contributions to these three traits were 45.32, 31.39, 31.31%, respectively without epistasis being included. The results suggested that epistasis model was more effective than non-epistasis model in this study and can be more preferred for other applications.

Assessing and modelling ecohydrologic processes at the agricultural field scale

NASA Astrophysics Data System (ADS)

Basso, Bruno

2015-04-01

One of the primary goals of agricultural management is to increase the amount of crop produced per unit of fertilizer and water used. World record corn yields demonstrated that water use efficiency can increase fourfold with improved agronomic management and cultivars able to tolerate high densities. Planting crops with higher plant density can lead to significant yield increases, and increase plant transpiration vs. soil water evaporation. Precision agriculture technologies have been adopted for the last twenty years but seldom have the data collected been converted to information that led farmers to different agronomic management. These methods are intuitively appealing, but yield maps and other spatial layers of data need to be properly analyzed and interpreted to truly become valuable. Current agro-mechanic and geospatial technologies allow us to implement a spatially variable plan for agronomic inputs including seeding rate, cultivars, pesticides, herbicides, fertilizers, and water. Crop models are valuable tools to evaluate the impact of management strategies (e.g., cover crops, tile drains, and genetically-improved cultivars) on yield, soil carbon sequestration, leaching and greenhouse gas emissions. They can help farmers identify adaptation strategies to current and future climate conditions. In this paper I illustrate the key role that precision agriculture technologies (yield mapping technologies, within season soil and crop sensing), crop modeling and weather can play in dealing with the impact of climate variability on soil ecohydrologic processes. Case studies are presented to illustrate this concept.

Multicollinearity in canonical correlation analysis in maize.

PubMed

Alves, B M; Cargnelutti Filho, A; Burin, C

2017-03-30

The objective of this study was to evaluate the effects of multicollinearity under two methods of canonical correlation analysis (with and without elimination of variables) in maize (Zea mays L.) crop. Seventy-six maize genotypes were evaluated in three experiments, conducted in a randomized block design with three replications, during the 2009/2010 crop season. Eleven agronomic variables (number of days from sowing until female flowering, number of days from sowing until male flowering, plant height, ear insertion height, ear placement, number of plants, number of ears, ear index, ear weight, grain yield, and one thousand grain weight), 12 protein-nutritional variables (crude protein, lysine, methionine, cysteine, threonine, tryptophan, valine, isoleucine, leucine, phenylalanine, histidine, and arginine), and 6 energetic-nutritional variables (apparent metabolizable energy, apparent metabolizable energy corrected for nitrogen, ether extract, crude fiber, starch, and amylose) were measured. A phenotypic correlation matrix was first generated among the 29 variables for each of the experiments. A multicollinearity diagnosis was later performed within each group of variables using methodologies such as variance inflation factor and condition number. Canonical correlation analysis was then performed, with and without the elimination of variables, among groups of agronomic and protein-nutritional, and agronomic and energetic-nutritional variables. The canonical correlation analysis in the presence of multicollinearity (without elimination of variables) overestimates the variability of canonical coefficients. The elimination of variables is an efficient method to circumvent multicollinearity in canonical correlation analysis.

An Economic Risk Analysis of Weed Suppressive Rice Cultivars in Rice Production

USDA-ARS?s Scientific Manuscript database

Weeds are a major constraint to rice production. In the United States, most rice cultivars are not inherently weed-suppressive and require substantial herbicide inputs to achieve agronomic and economic viability. Intensive herbicide application in rice also has many potential drawbacks, resulting in...

Crop response to localized organic amendment in soils with limiting physical properties

NASA Astrophysics Data System (ADS)

Lordan, Joan; Pascual, Miquel; Fonseca, Francisco; Villar, Josep Maria; Montilla, Victor; Papió, Josep; Rufat, Josep

2013-04-01

This 2-year study evaluated the use of rice husk as a localized organic amendment in a soil with limiting physical properties. The research was conducted in a commercial peach orchard planted in 2011 using a ridge planting system. Six soil and water management treatments were evaluated in 18 experimental units, which were set up in the field using a randomized complete block design. The treatments were compared both in terms of soil physical properties and crop response. Soil amendment with rice husk was the most effective technique. It improved soil conditions (soil infiltration and soil porosity), providing a better soil environment for root activity and thereby resulted in better crop performance. Concerning growth parameters, the amended treatment presented the highest overall values without negatively affecting crop water status. These techniques were suitable for mitigating the effects of soils with limiting physical conditions. Localized applications of amendments, as proposed in this work, imply an important reduction in application rates. It is important to consider an efficient use of by-products since there is a growing interest in industrial and agronomical exploitations.

Field-Based High-Throughput Plant Phenotyping Reveals the Temporal Patterns of Quantitative Trait Loci Associated with Stress-Responsive Traits in Cotton

PubMed Central

Pauli, Duke; Andrade-Sanchez, Pedro; Carmo-Silva, A. Elizabete; Gazave, Elodie; French, Andrew N.; Heun, John; Hunsaker, Douglas J.; Lipka, Alexander E.; Setter, Tim L.; Strand, Robert J.; Thorp, Kelly R.; Wang, Sam; White, Jeffrey W.; Gore, Michael A.

2016-01-01

The application of high-throughput plant phenotyping (HTPP) to continuously study plant populations under relevant growing conditions creates the possibility to more efficiently dissect the genetic basis of dynamic adaptive traits. Toward this end, we employed a field-based HTPP system that deployed sets of sensors to simultaneously measure canopy temperature, reflectance, and height on a cotton (Gossypium hirsutum L.) recombinant inbred line mapping population. The evaluation trials were conducted under well-watered and water-limited conditions in a replicated field experiment at a hot, arid location in central Arizona, with trait measurements taken at different times on multiple days across 2010–2012. Canopy temperature, normalized difference vegetation index (NDVI), height, and leaf area index (LAI) displayed moderate-to-high broad-sense heritabilities, as well as varied interactions among genotypes with water regime and time of day. Distinct temporal patterns of quantitative trait loci (QTL) expression were mostly observed for canopy temperature and NDVI, and varied across plant developmental stages. In addition, the strength of correlation between HTPP canopy traits and agronomic traits, such as lint yield, displayed a time-dependent relationship. We also found that the genomic position of some QTL controlling HTPP canopy traits were shared with those of QTL identified for agronomic and physiological traits. This work demonstrates the novel use of a field-based HTPP system to study the genetic basis of stress-adaptive traits in cotton, and these results have the potential to facilitate the development of stress-resilient cotton cultivars. PMID:26818078

Effects of different nitrogen reduction modes on yield of spring maize and nitrate - N residue in soils of the southern Loess Plateau

NASA Astrophysics Data System (ADS)

Dang, Tinghui; Dong, Qiang

2017-04-01

【Objectives】Excessive fertilization in farmland caused nitrate leaching and accumulation in soil, which not only reduced the fertilizer utilization rate, but also had potential environmental problems. The effects of different nitrogen reduction modes on yield of spring maize and soil NO3-N in the southern Loess Plateau were discussed, and scientific fertilization suggestions were put forward, which were of great significance to instruct local maize fertilization and protect environment safety. 【Methods】A field experiment was conducted in the south of the Loess Plateau for three years. Spring maize was planted with half plastic film mulching in one crop per annum．The experiment consisted of 5 N fertilization treatments: control treatment (CK),conventional N fertilization rate (Con), optimal N fertilizationⅠ(OptⅠ), optimal N fertilizationⅡ (Opt Ⅱ) and optimal N fertilization Ⅲ(Opt Ⅲ), The changes of yield of maize, nitrogen uptake and soil NO3-N were measured.【Results】The results showed that, compared with the conventional fertilization, the grain yield and N uptake of maize had no significant change under the three optimal N fertilization application models, the rate of the grain yield's change is 100 300kg/hm2. Compared with the conventional fertilization, agronomic efficiency of fertilizer-nitrogen and N partial fertilizer productivity were increased by 20.2% 23.2% and 21.9% 23.7%, respectively. The accumulation of nitrate nitrogen in profile (0－200 cm) decreased by 90.7 kg / hm2, 97.3 kg / hm2, 100.7 kg / hm2 ,respectively, with the decreases of 44.7%, 47.9% and 49.6% respectively.【Conclusions】The optimum nitrogen fertilization pattern did not affect spring maize yield and N uptake, and could improve agronomic efficiency of fertilizer-nitrogen and N partial fertilizer productivity. Under the same nitrogen application rate, the effects of adding nitrification inhibitor or slow-release fertilizer on nitrate-N residue were not obvious. The amount of nitrogen applied, the mode and type of fertilization had a certain effect on the migration of nitrate nitrogen. Optimized N - application model could significantly reduce the NO3—N residue in soil profile. It is suggested to reduce the amount of nitrogen fertilizer by 20% on the basis of the traditional nitrogen fertilizer when the spring maize is planted with half plastic film mulching, which can guarantee the yield and protect the environment.

Nitrous oxide emissions from soil amended with low-phosphorus broiler litter

USDA-ARS?s Scientific Manuscript database

Regions of the United States with a high concentration of poultry farms have soils with excess nitrogen (N) and phosphorus (P) far beyond the agronomic requirement of crops because of recurrent land application of broiler litter. A new waste treatment technology developed by USDA-ARS, called “Quick ...

Impact of long-term tillage and manure application on soil physical properties

USDA-ARS?s Scientific Manuscript database

Soil physical properties play an integral role in maintaining soil quality for sustainable agricultural practices. Agronomic practices such as tillage systems and organic amendments have been shown to influence soil physical properties. Thus, a study was conducted to evaluate effects of long-term ma...

Impacts of terrain attributes on economics and the environment: Costs of reducing potential nitrogen pollution in wheat production

USDA-ARS?s Scientific Manuscript database

The economic cost of achieving desired environmental outcomes from uniform and variable rate fertilizer application technologies depends both on market forces and agronomic properties. Using spatial econometric methods, we analyze the impact of nitrogen fertilizer supply by terrain attribute on the...

Expression of the Maize Dof1 Transcription Factor in Wheat and Sorghum

PubMed Central

Peña, Pamela A.; Quach, Truyen; Sato, Shirley; Ge, Zhengxiang; Nersesian, Natalya; Changa, Taity; Dweikat, Ismail; Soundararajan, Madhavan; Clemente, Tom E.

2017-01-01

Nitrogen is essential for plant growth and development. Improving the ability of plants to acquire and assimilate nitrogen more efficiently is a key agronomic parameter that will augment sustainability in agriculture. A transcription factor approach was pursued to address improvement of nitrogen use efficiency in two major commodity crops. To this end, the Zea mays Dof1 (ZmDof1) transcription factor was expressed in both wheat (Triticum aestivum) and sorghum (Sorghum bicolor) either constitutively, UBI4 promoter from sugarcane, or in a tissue specific fashion via the maize rbcS1 promoter. The primary transcription activation target of ZmDof1, phosphoenolpyruvate carboxylase (PEPC), is observed in transgenic wheat events. Expression ZmDof1 under control of the rbcs1 promoter translates to increase in biomass and yield components in wheat. However, constitutive expression of ZmDof1 led to the down-regulation of genes involved in photosynthesis and the functional apparatus of chloroplasts, and an outcome that negatively impacts photosynthesis, height, and biomass in wheat. Similar patterns were also observed in sorghum transgenic events harboring the constitutive expression cassette of ZmDof1. These results indicate that transcription factor strategies to boost agronomic phenotypic outcomes in crops need to consider expression patterns of the genetic elements to be introduced. PMID:28424717

Processing Pipeline of Sugarcane Spectral Response to Characterize the Fallen Plants Phenomenon

NASA Astrophysics Data System (ADS)

Solano, Agustín; Kemerer, Alejandra; Hadad, Alejandro

2016-04-01

Nowadays, in agronomic systems it is possible to make a variable management of inputs to improve the efficiency of agronomic industry and optimize the logistics of the harvesting process. In this way, it was proposed for sugarcane culture the use of remote sensing tools and computational methods to identify useful areas in the cultivated lands. The objective was to use these areas to make variable management of the crop. When at the moment of harvesting the sugarcane there are fallen stalks, together with them some strange material (vegetal or mineral) is collected. This strange material is not millable and when it enters onto the sugar mill it causes important looses of efficiency in the sugar extraction processes and affects its quality. Considering this issue, the spectral response of sugarcane plants in aerial multispectral images was studied. The spectral response was analyzed in different bands of the electromagnetic spectrum. Then, the aerial images were segmented to obtain homogeneous regions useful for producers to make decisions related to the use of inputs and resources according to the variability of the system (existence of fallen cane and standing cane). The obtained segmentation results were satisfactory. It was possible to identify regions with fallen cane and regions with standing cane with high precision rates.

Know your community - Biochar: agronomic and environmental uses community

USDA-ARS?s Scientific Manuscript database

The “Biochar: Agronomic and Environmental Uses” Community was formed in November 2010 (https://www.agronomy.org/membership/communities/biochar-agronomic-and-environmental-uses). The community’s initial function has been providing a forum at the tri-society’s national meetings to fill the need for a ...

The agronomic science of spatial and temporal water management:How much, when and where

USDA-ARS?s Scientific Manuscript database

The agronomic sciences are those that are applied to soil and water management and crop production, including soil, water and plant sciences and related disciplines. The science of spatial and temporal water management includes many agronomic science factors, including soil physics, biophysics, plan...

Integrated soil fertility management in sub-Saharan Africa: unravelling local adaptation

NASA Astrophysics Data System (ADS)

Vanlauwe, B.; Descheemaeker, K.; Giller, K. E.; Huising, J.; Merckx, R.; Nziguheba, G.; Wendt, J.; Zingore, S.

2014-12-01

Intensification of smallholder agriculture in sub-Saharan Africa is necessary to address rural poverty and natural resource degradation. Integrated Soil Fertility Management (ISFM) is a means to enhance crop productivity while maximizing the agronomic efficiency (AE) of applied inputs, and can thus contribute to sustainable intensification. ISFM consists of a set of best practices, preferably used in combination, including the use of appropriate germplasm, the appropriate use of fertilizer and of organic resources, and good agronomic practices. The large variability in soil fertility conditions within smallholder farms is also recognised within ISFM, including soils with constraints beyond those addressed by fertilizer and organic inputs. The variable biophysical environments that characterize smallholder farming systems have profound effects on crop productivity and AE and targeted application of limited agro-inputs and management practices is necessary to enhance AE. Further, management decisions depend on the farmer's resource endowments and production objectives. In this paper we discuss the "local adaptation" component of ISFM and how this can be conceptualized within an ISFM framework, backstopped by analysis of AE at plot and farm level. At plot level, a set of four constraints to maximum AE is discussed in relation to "local adaptation": soil acidity, secondary nutrient and micro-nutrient (SMN) deficiencies, physical constraints, and drought stress. In each of these cases, examples are presented whereby amendments and/or practices addressing these have a significantly positive impact on fertilizer AE, including mechanistic principles underlying these effects. While the impact of such amendments and/or practices is easily understood for some practices (e.g., the application of SMNs where these are limiting), for others, more complex interactions with fertilizer AE can be identified (e.g., water harvesting under varying rainfall conditions). At farm scale, adjusting fertilizer applications within-farm soil fertility gradients has the potential to increase AE compared with blanket recommendations, in particular where fertility gradients are strong. In the final section, "local adaption" is discussed in relation to scale issues and decision support tools are evaluated as a means to create a better understanding of complexity at farm level and to communicate best scenarios for allocating agro-inputs and management practices within heterogeneous farming environments.

Integrated soil fertility management in sub-Saharan Africa: unravelling local adaptation

NASA Astrophysics Data System (ADS)

Vanlauwe, B.; Descheemaeker, K.; Giller, K. E.; Huising, J.; Merckx, R.; Nziguheba, G.; Wendt, J.; Zingore, S.

2015-06-01

Intensification of smallholder agriculture in sub-Saharan Africa is necessary to address rural poverty and natural resource degradation. Integrated soil fertility management (ISFM) is a means to enhance crop productivity while maximizing the agronomic efficiency (AE) of applied inputs, and can thus contribute to sustainable intensification. ISFM consists of a set of best practices, preferably used in combination, including the use of appropriate germplasm, the appropriate use of fertilizer and of organic resources, and good agronomic practices. The large variability in soil fertility conditions within smallholder farms is also recognized within ISFM, including soils with constraints beyond those addressed by fertilizer and organic inputs. The variable biophysical environments that characterize smallholder farming systems have profound effects on crop productivity and AE, and targeted application of agro-inputs and management practices is necessary to enhance AE. Further, management decisions depend on the farmer's resource endowments and production objectives. In this paper we discuss the "local adaptation" component of ISFM and how this can be conceptualized within an ISFM framework, backstopped by analysis of AE at plot and farm level. At plot level, a set of four constraints to maximum AE is discussed in relation to "local adaptation": soil acidity, secondary nutrient and micronutrient (SMN) deficiencies, physical constraints, and drought stress. In each of these cases, examples are presented whereby amendments and/or practices addressing these have a significantly positive impact on fertilizer AE, including mechanistic principles underlying these effects. While the impact of such amendments and/or practices is easily understood for some practices (e.g. the application of SMNs where these are limiting), for others, more complex processes influence AE (e.g. water harvesting under varying rainfall conditions). At farm scale, adjusting fertilizer applications to within-farm soil fertility gradients has the potential to increase AE compared with blanket recommendations, in particular where fertility gradients are strong. In the final section, "local adaption" is discussed in relation to scale issues and decision support tools are evaluated as a means to create a better understanding of complexity at farm level and to communicate appropriate scenarios for allocating agro-inputs and management practices within heterogeneous farming environments.

Optimising yield and resource utilisation of summer maize under the conditions of increasing density and reducing nitrogen fertilization.

PubMed

Wei, Shanshan; Wang, Xiangyu; Zhu, Qicen; Jiang, Dong; Dong, Shuting

2017-10-05

The inefficient use of resources always poses risks of maize (Zea mays L.) yield reduction in China. We performed this research to monitor the effects of increasing plant density and reducing nitrogen (N) rate on radiation-use efficiency (RUE), N efficiency traits, grain yield (GY) and their inter-relationships. Besides, whether GY and resource-use efficiency can both be maximized was examined. Hence, a 2-year field experiment was conducted using a widely grown variety "Denghai 618" in Shandong, China. Treatments contained two different plant densities [67,500 (D 1 ) and 97,500 (D 2 ) plant ha -1 ] and three N levels [0 (N -2 ), 180 (N -1 ), 360 (N ck ) kg ha -1 ], set D 1 N ck as control. Significant increases in grain yield, biomass, RUE, above-ground N uptake (AGN) and N efficiency were observed when density increased from D 1 to D 2 . Declining N application was accompanied by reductions in yield, RUE and AGN especially under high density, yet an obvious improvement in N recovery efficiency (NRE), agronomic N efficiency and N partial factor productivity. The increased GY was positive related with population biomass (r = 0.895**), RUE (r = 0.769**) and AGN (r = 0.923**), whereas it has no significant correlation with N efficiency. In this study, D 2 N ck obtained 18.8, 17.9, 24.8 and 29.7% higher grain yield, RUE, AGN and NRE respectively, compared to control, optimizing both yield and the efficiencies of radiation and N use. Furthermore, higher yield and RUE with more desirable N efficiency may be possible via optimizing density and N rate combination.

Optimising yield and resource utilisation of summer maize under the conditions of increasing density and reducing nitrogen fertilization

NASA Astrophysics Data System (ADS)

Wei, Shanshan; Wang, Xiangyu; Zhu, Qicen; Jiang, Dong; Dong, Shuting

2017-12-01

The inefficient use of resources always poses risks of maize ( Zea mays L.) yield reduction in China. We performed this research to monitor the effects of increasing plant density and reducing nitrogen (N) rate on radiation-use efficiency (RUE), N efficiency traits, grain yield (GY) and their inter-relationships. Besides, whether GY and resource-use efficiency can both be maximized was examined. Hence, a 2-year field experiment was conducted using a widely grown variety "Denghai 618" in Shandong, China. Treatments contained two different plant densities [67,500 (D1) and 97,500 (D2) plant ha-1] and three N levels [0 (N-2), 180 (N-1), 360 (Nck) kg ha-1], set D1Nck as control. Significant increases in grain yield, biomass, RUE, above-ground N uptake (AGN) and N efficiency were observed when density increased from D1 to D2. Declining N application was accompanied by reductions in yield, RUE and AGN especially under high density, yet an obvious improvement in N recovery efficiency (NRE), agronomic N efficiency and N partial factor productivity. The increased GY was positive related with population biomass ( r = 0.895**), RUE ( r = 0.769**) and AGN ( r = 0.923**), whereas it has no significant correlation with N efficiency. In this study, D2Nck obtained 18.8, 17.9, 24.8 and 29.7% higher grain yield, RUE, AGN and NRE respectively, compared to control, optimizing both yield and the efficiencies of radiation and N use. Furthermore, higher yield and RUE with more desirable N efficiency may be possible via optimizing density and N rate combination.

Bridging the gap between genome analysis and precision breeding in potato.

PubMed

Gebhardt, Christiane

2013-04-01

Efficiency and precision in plant breeding can be enhanced by using diagnostic DNA-based markers for the selection of superior cultivars. This technique has been applied to many crops, including potatoes. The first generation of diagnostic DNA-based markers useful in potato breeding were enabled by several developments: genetic linkage maps based on DNA polymorphisms, linkage mapping of qualitative and quantitative agronomic traits, cloning and functional analysis of genes for pathogen resistance and genes controlling plant metabolism, and association genetics in collections of tetraploid varieties and advanced breeding clones. Although these have led to significant improvements in potato genetics, the prediction of most, if not all, natural variation in agronomic traits by diagnostic markers ultimately requires the identification of the causal genes and their allelic variants. This objective will be facilitated by new genomic tools, such as genomic resequencing and comparative profiling of the proteome, transcriptome, and metabolome in combination with phenotyping genetic materials relevant for variety development. Copyright © 2012 Elsevier Ltd. All rights reserved.

The composition, leaching, and sorption behavior of some alternative sources of phosphorus for soils.

PubMed

Stutter, Marc I

2015-03-01

Concerns about the sustainability of inorganic fertilizers necessitate the characterization of alternative P source materials for agronomic P-efficiencies and P losses via leaching. Firstly, this study examined nutrient compositions including P speciation of seven soil amendments: sewage sludge (SS), anaerobic digestate (AD), green compost (GC), food waste compost (FWC), chicken manure (CM), biochar, and seaweed. Secondly, soil P leaching and availability was studied on a subset of four materials (SS, AD, GC, and CM). Sorption of extracts onto columns of a test soil showed strong P retention for SS and compost, but weak P sorption for CM and especially AD, suggesting short-term leaching risks for soil applied AD. Limited P desorption with water or citrate indicated sorbed P was strongly fixed, potentially limiting crop availability. These data indicate that variation in P forms and environmental behavior should be understood to maximize P usage, but minimize leaching and soil P accumulation. Hence, different alternative P source materials need differing recommendations for their agronomic management.

Transgenic Wheat, Barley and Oats: Future Prospects

NASA Astrophysics Data System (ADS)

Dunwell, Jim M.

Following the success of transgenic maize and rice, methods have now been developed for the efficient introduction of genes into wheat, barley and oats. This review summarizes the present position in relation to these three species, and also uses information from field trial databases and the patent literature to assess the future trends in the exploitation of transgenic material. This analysis includes agronomic traits and also discusses opportunities in expanding areas such as biofuels and biopharming.

FGD gypsum filters remove soluble phosphorus from agricultural drainage waters

USDA-ARS?s Scientific Manuscript database

Decades of chicken litter applications has led to phosphorus (P) levels up to ten times the agronomic optimum in soils of the Delmarva Peninsula. This legacy P is a major source of P entering drainage ditches that eventually empty into the Chesapeake Bay. A Flue Gas Desulfurization (FGD) gypsum ditc...

Camelina growth and yield response to sowing depth and rate in the northern Corn Belt USA

USDA-ARS?s Scientific Manuscript database

Camelina (Camelina sativa L.) is gaining interest as a productive alternative oilseed crop for biofuels and healthy food-use applications. Developing sound agronomic practices for its production is key to optimizing its seed oil yield potential. Plant stand establishment of camelina has been problem...

Evaluation of genetic diversity among soybean (Glycine max) genotypes using univariate and multivariate analysis.

PubMed

Oliveira, M M; Sousa, L B; Reis, M C; Silva Junior, E G; Cardoso, D B O; Hamawaki, O T; Nogueira, A P O

2017-05-31

The genetic diversity study has paramount importance in breeding programs; hence, it allows selection and choice of the parental genetic divergence, which have the agronomic traits desired by the breeder. This study aimed to characterize the genetic divergence between 24 soybean genotypes through their agronomic traits, using multivariate clustering methods to select the potential genitors for the promising hybrid combinations. Six agronomic traits evaluated were number of days to flowering and maturity, plant height at flowering and maturity, insertion height of the first pod, and yield. The genetic divergence evaluated by multivariate analysis that esteemed first the Mahalanobis' generalized distance (D 2 ), then the clustering using Tocher's optimization methods, and then the unweighted pair group method with arithmetic average (UPGMA). Tocher's optimization method and the UPGMA agreed with the groups' constitution between each other, the formation of eight distinct groups according Tocher's method and seven distinct groups using UPGMA. The trait number of days for flowering (45.66%) was the most efficient to explain dissimilarity between genotypes, and must be one of the main traits considered by the breeder in the moment of genitors choice in soybean-breeding programs. The genetic variability allowed the identification of dissimilar genotypes and with superior performances. The hybridizations UFU 18 x UFUS CARAJÁS, UFU 15 x UFU 13, and UFU 13 x UFUS CARAJÁS are promising to obtain superior segregating populations, which enable the development of more productive genotypes.

Field-Based Estimates of Global Warming Potential in Bioenergy Systems of Hawaii: Crop Choice and Deficit Irrigation.

PubMed

Pawlowski, Meghan N; Crow, Susan E; Meki, Manyowa N; Kiniry, James R; Taylor, Andrew D; Ogoshi, Richard; Youkhana, Adel; Nakahata, Mae

2017-01-01

Replacing fossil fuel with biofuel is environmentally viable from a climate change perspective only if the net greenhouse gas (GHG) footprint of the system is reduced. The effects of replacing annual arable crops with perennial bioenergy feedstocks on net GHG production and soil carbon (C) stock are critical to the system-level balance. Here, we compared GHG flux, crop yield, root biomass, and soil C stock under two potential tropical, perennial grass biofuel feedstocks: conventional sugarcane and ratoon-harvested, zero-tillage napiergrass. Evaluations were conducted at two irrigation levels, 100% of plantation application and at a 50% deficit. Peaks and troughs of GHG emission followed agronomic events such as ratoon harvest of napiergrass and fertilization. Yet, net GHG flux was dominated by carbon dioxide (CO2), as methane was oxidized and nitrous oxide (N2O) emission was very low even following fertilization. High N2O fluxes that frequently negate other greenhouse gas benefits that come from replacing fossil fuels with agronomic forms of bioenergy were mitigated by efficient water and fertilizer management, including direct injection of fertilizer into buried irrigation lines. From soil intensively cultivated for a century in sugarcane, soil C stock and root biomass increased rapidly following cultivation in grasses selected for robust root systems and drought tolerance. The net soil C increase over the two-year crop cycle was three-fold greater than the annualized soil surface CO2 flux. Deficit irrigation reduced yield, but increased soil C accumulation as proportionately more photosynthetic resources were allocated belowground. In the first two years of cultivation napiergrass did not increase net greenhouse warming potential (GWP) compared to sugarcane, and has the advantage of multiple ratoon harvests per year and less negative effects of deficit irrigation to yield.

Field-Based Estimates of Global Warming Potential in Bioenergy Systems of Hawaii: Crop Choice and Deficit Irrigation

PubMed Central

Meki, Manyowa N.; Kiniry, James R.; Taylor, Andrew D.; Ogoshi, Richard; Youkhana, Adel; Nakahata, Mae

2017-01-01

Replacing fossil fuel with biofuel is environmentally viable from a climate change perspective only if the net greenhouse gas (GHG) footprint of the system is reduced. The effects of replacing annual arable crops with perennial bioenergy feedstocks on net GHG production and soil carbon (C) stock are critical to the system-level balance. Here, we compared GHG flux, crop yield, root biomass, and soil C stock under two potential tropical, perennial grass biofuel feedstocks: conventional sugarcane and ratoon-harvested, zero-tillage napiergrass. Evaluations were conducted at two irrigation levels, 100% of plantation application and at a 50% deficit. Peaks and troughs of GHG emission followed agronomic events such as ratoon harvest of napiergrass and fertilization. Yet, net GHG flux was dominated by carbon dioxide (CO2), as methane was oxidized and nitrous oxide (N2O) emission was very low even following fertilization. High N2O fluxes that frequently negate other greenhouse gas benefits that come from replacing fossil fuels with agronomic forms of bioenergy were mitigated by efficient water and fertilizer management, including direct injection of fertilizer into buried irrigation lines. From soil intensively cultivated for a century in sugarcane, soil C stock and root biomass increased rapidly following cultivation in grasses selected for robust root systems and drought tolerance. The net soil C increase over the two-year crop cycle was three-fold greater than the annualized soil surface CO2 flux. Deficit irrigation reduced yield, but increased soil C accumulation as proportionately more photosynthetic resources were allocated belowground. In the first two years of cultivation napiergrass did not increase net greenhouse warming potential (GWP) compared to sugarcane, and has the advantage of multiple ratoon harvests per year and less negative effects of deficit irrigation to yield. PMID:28052075

Evaluation of a new inference method for estimating ammonia volatilisation from multiple agronomic plots

NASA Astrophysics Data System (ADS)

Loubet, Benjamin; Carozzi, Marco; Voylokov, Polina; Cohan, Jean-Pierre; Trochard, Robert; Génermont, Sophie

2018-06-01

Tropospheric ammonia (NH3) is a threat to the environment and human health and is mainly emitted by agriculture. Ammonia volatilisation following application of nitrogen in the field accounts for more than 40 % of the total NH3 emissions in France. This represents a major loss of nitrogen use efficiency which needs to be reduced by appropriate agricultural practices. In this study we evaluate a novel method to infer NH3 volatilisation from small agronomic plots consisting of multiple treatments with repetition. The method is based on the combination of a set of NH3 diffusion sensors exposed for durations of 3 h to 1 week and a short-range atmospheric dispersion model, used to retrieve the emissions from each plot. The method is evaluated by mimicking NH3 emissions from an ensemble of nine plots with a resistance analogue-compensation point-surface exchange scheme over a yearly meteorological database separated into 28-day periods. A multifactorial simulation scheme is used to test the effects of sensor numbers and heights, plot dimensions, source strengths, and background concentrations on the quality of the inference method. We further demonstrate by theoretical considerations in the case of an isolated plot that inferring emissions with diffusion sensors integrating over daily periods will always lead to underestimations due to correlations between emissions and atmospheric transfer. We evaluated these underestimations as -8 % ± 6 % of the emissions for a typical western European climate. For multiple plots, we find that this method would lead to median underestimations of -16 % with an interquartile [-8-22 %] for two treatments differing by a factor of up to 20 and a control treatment with no emissions. We further evaluate the methodology for varying background concentrations and NH3 emissions patterns and demonstrate the low sensitivity of the method to these factors. The method was also tested in a real case and proved to provide sound evaluations of NH3 losses from surface applied and incorporated slurry. We hence showed that this novel method should be robust and suitable for estimating NH3 emissions from agronomic plots. We believe that the method could be further improved by using Bayesian inference and inferring surface concentrations rather than surface fluxes. Validating against controlled source is also a remaining challenge.

Camelina as a sustainable oilseed crop: contributions of plant breeding and genetic engineering.

PubMed

Vollmann, Johann; Eynck, Christina

2015-04-01

Camelina is an underutilized Brassicaceae oilseed plant with a considerable agronomic potential for biofuel and vegetable oil production in temperate regions. In contrast to most Brassicaceae, camelina is resistant to alternaria black spot and other diseases and pests. Sequencing of the camelina genome revealed an undifferentiated allohexaploid genome with a comparatively large number of genes and low percentage of repetitive DNA. As there is a close relationship between camelina and the genetic model plant Arabidopsis, this review aims at exploring the potential of translating basic Arabidopsis results into a camelina oilseed crop for food and non-food applications. Recently, Arabidopsis genes for drought resistance or increased photosynthesis and overall productivity have successfully been expressed in camelina. In addition, gene constructs affecting lipid metabolism pathways have been engineered into camelina for synthesizing either long-chain polyunsaturated fatty acids, hydroxy fatty acids or high-oleic oils in particular camelina strains, which is of great interest in human food, industrial or biofuel applications, respectively. These results confirm the potential of camelina to serve as a biotechnology platform in biorefinery applications thus justifying further investment in breeding and genetic research for combining agronomic potential, unique oil quality features and biosafety into an agricultural production system. Copyright © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Applications and challenges of next-generation sequencing in Brassica species.

PubMed

Wei, Lijuan; Xiao, Meili; Hayward, Alice; Fu, Donghui

2013-12-01

Next-generation sequencing (NGS) produces numerous (often millions) short DNA sequence reads, typically varying between 25 and 400 bp in length, at a relatively low cost and in a short time. This revolutionary technology is being increasingly applied in whole-genome, transcriptome, epigenome and small RNA sequencing, molecular marker and gene discovery, comparative and evolutionary genomics, and association studies. The Brassica genus comprises some of the most agro-economically important crops, providing abundant vegetables, condiments, fodder, oil and medicinal products. Many Brassica species have undergone the process of polyploidization, which makes their genomes exceptionally complex and can create difficulties in genomics research. NGS injects new vigor into Brassica research, yet also faces specific challenges in the analysis of complex crop genomes and traits. In this article, we review the advantages and limitations of different NGS technologies and their applications and challenges, using Brassica as an advanced model system for agronomically important, polyploid crops. Specifically, we focus on the use of NGS for genome resequencing, transcriptome sequencing, development of single-nucleotide polymorphism markers, and identification of novel microRNAs and their targets. We present trends and advances in NGS technology in relation to Brassica crop improvement, with wide application for sophisticated genomics research into agronomically important polyploid crops.

Voluntary intake and digestibility by sheep of alfalfa ensiled at different moisture concentrations following fertilization with dairy slurry

USDA-ARS?s Scientific Manuscript database

Dairy slurry is used commonly as an animal-sourced fertilizer in agronomic production. However, residual effects of slurry application on intake and digestibility of alfalfa (Medicago sativa L.) silage from subsequent harvests are not well known. The objective of this study was to determine if mois...

Nitrogen mineralization and nitrous oxide emissions in a sandy soil amended with low-phosphorus broiler litter

USDA-ARS?s Scientific Manuscript database

Recurrent land application of broiler litter in regions with a high concentration of poultry farms result in soils with phosphorus (P) far beyond the agronomic requirement of crops. A new waste treatment technology developed by USDA-ARS, called “Quick Wash”, chemically extracts and recovers P from b...

Assessment of the SWAT model to simulate a watershed with limited available data in the Pampas region, Argentina.

PubMed

Romagnoli, Martín; Portapila, Margarita; Rigalli, Alfredo; Maydana, Gisela; Burgués, Martín; García, Carlos M

2017-10-15

Argentina has been among the world leaders in the production and export of agricultural products since the 1990s. The Carcarañá River Lower Basin (CRLB), a cropland of the Pampas region supplied by extensive rainfall, is located in an area with few streamgauging and other hydrologic/water-quality stations. Therefore, limited hydrologic data are available resulting in limited water-resources assessment. This work explores the application of Soil and Water Assessment Tool (SWAT) model to the CRLB in the Santa Fe province of the Pampas region. The analysis of field and remote-sensing data characterizing hydrology, water quality, soil types, land use/land cover, management practices, and crop yield, guarantee a comprehensive SWAT modeling approach. A combined manual and automated calibration and validation process incorporating sensitivity and uncertainty analysis is performed using information concerning interior watershed processes. Eleven N/P fertilizer rates are selected to simulate the impact of N fertilizer on crop yield, plant uptake, as well as runoff and leaching losses. Different indices (partial factor productivity, agronomic efficiency, apparent crop recovery efficiency of applied nutrient, internal utilization efficiency, and physiological efficiency) are considered to assess nitrogen-use efficiency. The overall quality of the fit is satisfactory considering the input data limitations. This work provides, for the first time in Argentina, a reliable tool to simulate yield response to soil quality and water availability capable to meet defined environmental targets to support decision making on planning public policies and private activities on the Pampas region. Copyright © 2017 Elsevier B.V. All rights reserved.

Application of Targeted Metabolomics to Investigate Optimum Growing Conditions to Enhance Bioactive Content of Strawberry.

PubMed

Akhatou, Ikram; Sayago, Ana; González-Domínguez, Raúl; Fernández-Recamales, Ángeles

2017-11-01

A simple, sensitive, and rapid assay based on liquid chromatography coupled to tandem mass spectrometry was designed for simultaneous quantitation of secondary metabolites in order to investigate the influence of variety and agronomic conditions on the biosynthesis of bioactive compounds in strawberry. For this purpose, strawberries belonging to three varieties with different sensitivity to environmental conditions ('Camarosa', 'Festival', 'Palomar') were grown in a soilless system under multiple agronomic conditions (electrical conductivity, substrate type, and coverage). Targeted metabolomic analysis of polyphenolic compounds, combined with advanced chemometric methods based on learning machines, revealed significant differences in multiple bioactives, such as chlorogenic acid, ellagic acid rhamnoside, sanguiin H10, quercetin 3-O-glucuronide, catechin, procyanidin B2, pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside, and pelargonidin 3-O-rutinoside, which play a pivotal role in organoleptic properties and beneficial healthy effects of these polyphenol-rich foods.

Characterization of bacterial consortium and its application in an ectopic fermentation system.

PubMed

Guo, Hui; Geng, Bing; Liu, Xue; Ye, Jing; Zhao, Yongkun; Zhu, Changxiong; Yuan, Hongli

2013-07-01

This study aimed to develop an ectopic fermentation system (EFS) to reduce the pollution of cow wastewater and to provide a basis for the production of biofertilizer with fermentation residues. Six thermophilic strains, three of which have efficient cellulose-degrading abilities and the other have good ammonia-N utilizing abilities, were chosen as the microbial inocula. The results showed that EFS inoculated with microbial consortium brought higher temperature and more wastewater was needed to ensure continuous fermentation. The pH values decreased in the early stage of fermentation, and then increased during the process. It caused increases in total Kjeldahl nitrogen, total phosphorous, and total potassium content. Decreases in organic matter content and C/N ratio were also observed. The high level of nutrients indicated the suitability of the paddings after fermentation for agronomic uses. It firstly attempted to combine cow wastewater treatment and bio-organic fertilizer production by EFS with mixed microbial culture. Copyright © 2013 Elsevier Ltd. All rights reserved.

Targeted Proteomics Approach for Precision Plant Breeding.

PubMed

Chawade, Aakash; Alexandersson, Erik; Bengtsson, Therese; Andreasson, Erik; Levander, Fredrik

2016-02-05

Selected reaction monitoring (SRM) is a targeted mass spectrometry technique that enables precise quantitation of hundreds of peptides in a single run. This technique provides new opportunities for multiplexed protein biomarker measurements. For precision plant breeding, DNA-based markers have been used extensively, but the potential of protein biomarkers has not been exploited. In this work, we developed an SRM marker panel with assays for 104 potato (Solanum tuberosum) peptides selected using univariate and multivariate statistics. Thereafter, using random forest classification, the prediction markers were identified for Phytopthora infestans resistance in leaves, P. infestans resistance in tubers, and plant yield in potato leaf secretome samples. The results suggest that the marker panel has the predictive potential for three traits, two of which have no commercial DNA markers so far. Furthermore, the marker panel was also tested and found to be applicable to potato clones not used during the marker development. The proposed workflow is thus a proof-of-concept for targeted proteomics as an efficient readout in accelerated breeding for complex and agronomically important traits.

Drying or anaerobic digestion of fish sludge: Nitrogen fertilisation effects and logistics.

PubMed

Brod, Eva; Oppen, Johan; Kristoffersen, Annbjørg Øverli; Haraldsen, Trond Knapp; Krogstad, Tore

2017-12-01

Application of fish sludge as fertiliser to agricultural land can contribute to closing nutrient cycles in fish farming. The effect of different treatment technologies on the nitrogen fertilisation effects of fish sludge was studied by a bioassay with barley (Hordeum vulgare), an incubation and a field experiment. Dried fish sludge resulted in relative agronomic efficiency of 50-80% compared with mineral fertiliser. The anaerobic digestate based on fish sludge (20 vol%) and dairy manure did not increase nitrogen uptake in barley. Increasing the ratio of fish sludge in the digestate increased the fertilisation effect, but requires optimisation of the biogas process. A simple logistics analysis conducted for a case hatchery showed that on-site drying and co-digestion of fish sludge in a central biogas plant can be regarded as equal in terms of costs. Norway can become an exporter of fish sludge-based recycling fertilisers if current regulations are modified to facilitate nutrient recycling.

Water conservation in irrigation can increase water use

PubMed Central

Ward, Frank A.; Pulido-Velazquez, Manuel

2008-01-01

Climate change, water supply limits, and continued population growth have intensified the search for measures to conserve water in irrigated agriculture, the world's largest water user. Policy measures that encourage adoption of water-conserving irrigation technologies are widely believed to make more water available for cities and the environment. However, little integrated analysis has been conducted to test this hypothesis. This article presents results of an integrated basin-scale analysis linking biophysical, hydrologic, agronomic, economic, policy, and institutional dimensions of the Upper Rio Grande Basin of North America. It analyzes a series of water conservation policies for their effect on water used in irrigation and on water conserved. In contrast to widely-held beliefs, our results show that water conservation subsidies are unlikely to reduce water use under conditions that occur in many river basins. Adoption of more efficient irrigation technologies reduces valuable return flows and limits aquifer recharge. Policies aimed at reducing water applications can actually increase water depletions. Achieving real water savings requires designing institutional, technical, and accounting measures that accurately track and economically reward reduced water depletions. Conservation programs that target reduced water diversions or applications provide no guarantee of saving water. PMID:19015510

Pentaploid Wheat Hybrids: Applications, Characterisation, and Challenges

PubMed Central

Padmanaban, Sriram; Zhang, Peng; Hare, Ray A.; Sutherland, Mark W.; Martin, Anke

2017-01-01

Interspecific hybridisation between hexaploid and tetraploid wheat species leads to the development of F1 pentaploid hybrids with unique chromosomal constitutions. Pentaploid hybrids derived from bread wheat (Triticum aestivum L.) and durum wheat (Triticum turgidum spp. durum Desf.) crosses can improve the genetic background of either parent by transferring traits of interest. The genetic variability derived from bread and durum wheat and transferred into pentaploid hybrids has the potential to improve disease resistance, abiotic tolerance, and grain quality, and to enhance agronomic characters. Nonetheless, pentaploid wheat hybrids have not been fully exploited in breeding programs aimed at improving crops. There are several potential barriers for efficient pentaploid wheat production, such as low pollen compatibility, poor seed set, failed seedling establishment, and frequent sterility in F1 hybrids. However, most of the barriers can be overcome by careful selection of the parental genotypes and by employing the higher ploidy level genotype as the maternal parent. In this review, we summarize the current research on pentaploid wheat hybrids and analyze the advantages and pitfalls of current methods used to assess pentaploid-derived lines. Furthermore, we discuss current and potential applications in commercial breeding programs and future directions for research into pentaploid wheat. PMID:28367153

Agronomic performance of insect-protected and herbicide-tolerant MON 89034 × TC1507 × NK603 × DAS-40278-9 corn is equivalent to that of conventional corn.

PubMed

de Cerqueira, Denise T Rezende; Schafer, Ariane C; Fast, Brandon J; Herman, Rod A

2017-07-03

Agronomic characteristics of genetically modified (GM) MON 89034 × TC1507 × NK603 × DAS-40278-9 (PowerCore™ Enlist™), MON 89034 × TC1507 × NK603 (PowerCore™), and DAS-40278-9 (Enlist™) corn, a non-GM near-isogenic hybrid, and 2 commercial non-GM hybrids were assessed in a field study to determine if the agronomic performance of the GM corn hybrids is equivalent to that of non-transgenic hybrid corn. The MON 89034 × TC1507 × NK603 × DAS-40278-9 hybrid corn was developed through stacking of 4 individual transgenic events, MON 89034, TC1507, NK603, and DAS-40278-9 by traditional breeding and contains the cry1A.105 and cry2Ab2 (MON 89034), cry1F and pat (TC1507), cp4 epsps (NK603) and aad-1 (DAS-40278-9) transgenes. These transgenes encode the proteins Cry1A.105, Cry2Ab2, and Cry1F, which confer insect resistance, PAT, CP4 EPSPS, and AAD-1, which confer herbicide tolerance. The following agronomic characteristics were assessed in the study: initial and final stand count, seedling vigor, time to silk, time to pollen shed, pollen viability, plant height, ear height, stalk lodging, root lodging, days to maturity, stay green, disease incidence, insect damage, herbicide injury, and yield. The agronomic assessment was conducted in 2 regions of Brazil (Indianopolis-MG; Cravinhos-SP). The agronomic attributes for all GM entries were statistically indistinguishable from the non-GM near-isogenic hybrid. In addition, most of the agronomic assessments fell within the range of the commercial varieties included in the study. Taken together, MON 89034 × TC1507 × NK603 × DAS-40278, MON 89034 × TC1507 × NK603, and DAS-40278-9 were found to be agronomically equivalent to non-GM corn.

Toxicity of newly isolated piperideine alkaloids from the red imported fire ant, Solenopsis invicta Buren, against the green peach aphid, Myzus persicae (Sulzer)

USDA-ARS?s Scientific Manuscript database

The green peach aphid, Myzus persicae (Sulzer), is a major insect pest of many agronomic and horticultural crops and is distributed worldwide Aphid management is often based on application of insecticides. However, the aphid is now resistant to many of these and much interest has recently develope...

Strategies for narrowing the maize yield gap of household farms through precision fertigation under irrigated conditions using CERES-Maize model.

PubMed

Liu, Jiangang; Wang, Guangyao; Chu, Qingquan; Chen, Fu

2017-07-01

Nitrogen (N) application significantly increases maize yield; however, the unreasonable use of N fertilizer is common in China. The analysis of crop yield gaps can reveal the limiting factors for yield improvement, but there is a lack of practical strategies for narrowing yield gaps of household farms. The objectives of this study were to assess the yield gap of summer maize using an integrative method and to develop strategies for narrowing the maize yield gap through precise N fertilization. The results indicated that there was a significant difference in maize yield among fields, with a low level of variation. Additionally, significant differences in N application rate were observed among fields, with high variability. Based on long-term simulation results, the optimal N application rate was 193 kg ha -1 , with a corresponding maximum attainable yield (AY max ) of 10 318 kg ha -1 . A considerable difference between farmers' yields and AY max was observed. Low agronomic efficiency of applied N fertilizer (AE N ) in farmers' fields was exhibited. The integrative method lays a foundation for exploring the specific factors constraining crop yield gaps at the field scale and for developing strategies for rapid site-specific N management. Optimization strategies to narrow the maize yield gap include increasing N application rates and adjusting the N application schedule. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

Closing oil palm yield gaps among Indonesian smallholders through industry schemes, pruning, weeding and improved seeds

PubMed Central

Soliman, T.; Lim, F. K. S.; Lee, J. S. H.

2016-01-01

Oil palm production has led to large losses of valuable habitats for tropical biodiversity. Sparing of land for nature could in theory be attained if oil palm yields increased. The efficiency of oil palm smallholders is below its potential capacity, but the factors determining efficiency are poorly understood. We employed a two-stage data envelopment analysis approach to assess the influence of agronomic, supply chain and management factors on oil palm production efficiency in 190 smallholders in six villages in Indonesia. The results show that, on average, yield increases of 65% were possible and that fertilizer and herbicide use was excessive and inefficient. Adopting industry-supported scheme management practices, use of high-quality seeds and higher pruning and weeding rates were found to improve efficiency. Smallholder oil palm production intensification in Indonesia has the capacity to increase production by 26%, an equivalent of 1.75 million hectares of land. PMID:27853605

Closing oil palm yield gaps among Indonesian smallholders through industry schemes, pruning, weeding and improved seeds.

PubMed

Soliman, T; Lim, F K S; Lee, J S H; Carrasco, L R

2016-08-01

Oil palm production has led to large losses of valuable habitats for tropical biodiversity. Sparing of land for nature could in theory be attained if oil palm yields increased. The efficiency of oil palm smallholders is below its potential capacity, but the factors determining efficiency are poorly understood. We employed a two-stage data envelopment analysis approach to assess the influence of agronomic, supply chain and management factors on oil palm production efficiency in 190 smallholders in six villages in Indonesia. The results show that, on average, yield increases of 65% were possible and that fertilizer and herbicide use was excessive and inefficient. Adopting industry-supported scheme management practices, use of high-quality seeds and higher pruning and weeding rates were found to improve efficiency. Smallholder oil palm production intensification in Indonesia has the capacity to increase production by 26%, an equivalent of 1.75 million hectares of land.

Bio-energy Alliance High-Tonnage Bio-energy Crop Production and Conversion into Conventional Fuels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Capareda, Sergio; El-Halwagi, Mahmoud; Hall, Kenneth R.

2012-11-30

Maintaining a predictable and sustainable supply of feedstock for bioenergy conversion is a major goal to facilitate the efficient transition to cellulosic biofuels. Our work provides insight into the complex interactions among agronomic, edaphic, and climatic factors that affect the sustainability of bioenergy crop yields. Our results provide science-based agronomic response measures that document how to better manage bioenergy sorghum production from planting to harvest. We show that harvest aids provide no significant benefit as a means to decrease harvest moisture or improve bioenergy yields. Our efforts to identify optimal seeding rates under varied edaphic and climatological conditions reinforce previousmore » findings that sorghum is a resilient plant that can efficiently adapt to changing population pressures by decreasing or increasing the numbers of additional shoots or tillers – where optimal seeding rates for high biomass photoperiod sensitive sorghum is 60,000 to 70,000 seeds per acre and 100,000 to 120,000 seeds per acre for sweet varieties. Our varietal adaptability trials revealed that high biomass photoperiod sensitive energy sorghum consistently outperforms conventional photoperiod insensitive sweet sorghum and high biomass forage sorghum as the preferred bioenergy sorghum type, with combined theoretical yields of both cellulosic and fermentable water-soluble sugars producing an average yield of 1,035 gallons of EtOH per acre. Our nitrogen trials reveal that sweet sorghums produce ample amounts of water-soluble sugars with minimal increases in nitrogen inputs, and that excess nitrogen can affect minor increases in biomass yields and cellulosic sugars but decrease bioenergy quality by decreasing water-soluble sugar concentrations and increasing ash content, specifically when plant tissue nitrogen concentrations exceed 0.6 %, dry weight basis. Finally, through our growth and re-growth trials, we show that single-cut high biomass sorghum bioenergy yields significantly exceed those of multiple-cut high biomass sorghum systems. Our agronomic yield and quality data will be uploaded to the Bioenergy KDF Website before the end of February 2013, with a date for public access to be determined pending peer-reviewed publication of our findings.« less

Setting Up Decision-Making Tools toward a Quality-Oriented Participatory Maize Breeding Program

PubMed Central

Alves, Mara L.; Brites, Cláudia; Paulo, Manuel; Carbas, Bruna; Belo, Maria; Mendes-Moreira, Pedro M. R.; Brites, Carla; Bronze, Maria do Rosário; Gunjača, Jerko; Šatović, Zlatko; Vaz Patto, Maria C.

2017-01-01

Previous studies have reported promising differences in the quality of kernels from farmers' maize populations collected in a Portuguese region known to produce maize-based bread. However, several limitations have been identified in the previous characterizations of those populations, such as a limited set of quality traits accessed and a missing accurate agronomic performance evaluation. The objectives of this study were to perform a more detailed quality characterization of Portuguese farmers' maize populations; to estimate their agronomic performance in a broader range of environments; and to integrate quality, agronomic, and molecular data in the setting up of decision-making tools for the establishment of a quality-oriented participatory maize breeding program. Sixteen farmers' maize populations, together with 10 other maize populations chosen for comparison purposes, were multiplied in a common-garden experiment for quality evaluation. Flour obtained from each population was used to study kernel composition (protein, fat, fiber), flour's pasting behavior, and bioactive compound levels (carotenoids, tocopherols, phenolic compounds). These maize populations were evaluated for grain yield and ear weight in nine locations across Portugal; the populations' adaptability and stability were evaluated using additive main effects and multiplication interaction (AMMI) model analysis. The phenotypic characterization of each population was complemented with a molecular characterization, in which 30 individuals per population were genotyped with 20 microsatellites. Almost all farmers' populations were clustered into the same quality-group characterized by high levels of protein and fiber, low levels of carotenoids, volatile aldehydes, α- and δ-tocopherols, and breakdown viscosity. Within this quality-group, variability on particular quality traits (color and some bioactive compounds) could still be found. Regarding the agronomic performance, farmers' maize populations had low, but considerably stable, grain yields across the tested environments. As for their genetic diversity, each farmers' population was genetically heterogeneous; nonetheless, all farmers' populations were distinct from each other's. In conclusion, and taking into consideration different quality improvement objectives, the integration of the data generated within this study allowed the outline and exploration of alternative directions for future breeding activities. As a consequence, more informed choices will optimize the use of the resources available and improve the efficiency of participatory breeding activities. PMID:29312428

[Correlation analysis of major agronomic characters and the polysaccharide contents in Dendrobium officinale].

PubMed

Zhang, Lei; Zheng, Xi-Long; Qiu, Dao-Shou; Cai, Shi-Ke; Luo, Huan-Ming; Deng, Rui-Yun; Liu, Xiao-Jin

2013-10-01

In order to provide theoretical and technological basis for the germplasm innovation and variety breeding in Dendrobium officinale, a study of the correlation between polysaccharide content and agronomic characters was conducted. Based on the polysaccharide content determination and the agronomic characters investigation of 30 copies (110 individual plants) of Dendrobium officinale germplasm resources, the correlation between polysaccharide content and agronomic characters was analyzed via path and correlation analysis. Correlation analysis results showed that there was a significant negative correlation between average spacing and polysaccharide content, the correlation coefficient was -0.695. And the blade thickness was positively correlated with the polysaccharide content, but the correlation was not significant. The path analysis results showed that the stem length was the maximum influence factor to the polysaccharide, and it was positive effect, the direct path coefficient was 1.568. According to thess results, the polysaccharide content can be easily and intuitively estimated by the agronomic characters investigating data in the germpalsm resources screening and variety breeding. Therefore, it is a visual and practical technology guidance in quality variety breeding of Dendrobium officinale.

Effectiveness of rabbit manure biofertilizer in barley crop yield.

PubMed

Islas-Valdez, Samira; Lucho-Constantino, Carlos A; Beltrán-Hernández, Rosa I; Gómez-Mercado, René; Vázquez-Rodríguez, Gabriela A; Herrera, Juan M; Jiménez-González, Angélica

2017-11-01

The quality of biofertilizers is usually assessed only in terms of the amount of nutrients that they supply to the crops and their lack of viable pathogens and phytotoxicity. The goal of this study was to determine the effectiveness of a liquid biofertilizer obtained from rabbit manure in terms of presence of pathogens, phytotoxicity, and its effect on the grain yield and other agronomic traits of barley (Hordeum vulgare L.). Environmental effects of the biofertilizer were also evaluated by following its influence on selected soil parameters. We applied the biofertilizer at five combinations of doses and timings each and in two application modes (foliar or direct soil application) within a randomized complete block design with three replicates and using a chemical fertilizer as control. The agronomic traits evaluated were plant height, root length, dry weight, and number of leaves and stems at three growth stages: tillering, jointing, and flowering. The effectiveness of the biofertilizer was significantly modified by the mode of application, the growth stage of the crop, and the dose of biofertilizer applied. The results showed that the foliar application of the biofertilizer at the tillering stage produced the highest increase in grain yield (59.7 %, p < 0.10). The use of the biofertilizer caused significant changes in soil, particularly concerning pH, EC, Ca, Zn, Mg, and Mn. It is our view that the production and use of biofertilizers are a reliable alternative to deal with a solid waste problem while food security is increased.

Towards mastering CRISPR-induced gene knock-in in plants: Survey of key features and focus on the model Physcomitrella patens.

PubMed

Collonnier, Cécile; Guyon-Debast, Anouchka; Maclot, François; Mara, Kostlend; Charlot, Florence; Nogué, Fabien

2017-05-15

Beyond its predominant role in human and animal therapy, the CRISPR-Cas9 system has also become an essential tool for plant research and plant breeding. Agronomic applications rely on the mastery of gene inactivation and gene modification. However, if the knock-out of genes by non-homologous end-joining (NHEJ)-mediated repair of the targeted double-strand breaks (DSBs) induced by the CRISPR-Cas9 system is rather well mastered, the knock-in of genes by homology-driven repair or end-joining remains difficult to perform efficiently in higher plants. In this review, we describe the different approaches that can be tested to improve the efficiency of CRISPR-induced gene modification in plants, which include the use of optimal transformation and regeneration protocols, the design of appropriate guide RNAs and donor templates and the choice of nucleases and means of delivery. We also present what can be done to orient DNA repair pathways in the target cells, and we show how the moss Physcomitrella patens can be used as a model plant to better understand what DNA repair mechanisms are involved, and how this knowledge could eventually be used to define more performant strategies of CRISPR-induced gene knock-in. Copyright © 2017 Elsevier Inc. All rights reserved.

Development of Novel Glyphosate-Tolerant Japonica Rice Lines: A Step Toward Commercial Release.

PubMed

Cui, Ying; Huang, Shuqing; Liu, Ziduo; Yi, Shuyuan; Zhou, Fei; Chen, Hao; Lin, Yongjun

2016-01-01

Glyphosate is the most widely used herbicide for its low cost and high efficiency. However, it is rarely applied directly in rice field due to its toxicity to rice. Therefore, glyphosate-tolerant rice can greatly decrease the cost of rice production and provide a more effective weed management strategy. Although, several approaches to develop transgenic rice with glyphosate tolerance have been reported, the agronomic performances of these plants have not been well evaluated, and the feasibility of commercial production has not been confirmed yet. Here, a novel glyphosate-tolerant gene cloned from the bacterium Isoptericola variabilis was identified, codon optimized (designated as I. variabilis-EPSPS (*)), and transferred into Zhonghua11, a widely used japonica rice cultivar. After systematic analysis of the transgene integration via PCR, Southern blot and flanking sequence isolation, three transgenic lines with only one intact I. variabilis-EPSPS (*) expression cassette integrated into intergenic regions were identified. Seed test results showed that the glyphosate tolerance of the transgenic rice was about 240 times that of wild type on plant medium. The glyphosate tolerance of transgenic rice lines was further evaluated based on comprehensive agronomic performances in the field with T3 and T5generations in a 2-year assay, which showed that they were rarely affected by glyphosate even when the dosage was 8400 g ha(-1). To our knowledge, this is the first demonstration of the development of glyphosate-tolerant rice lines based on a comprehensive analysis of agronomic performances in the field. Taken together, the results suggest that the selected glyphosate-tolerant rice lines are highly tolerant to glyphosate and have the possibility of commercial release. I. variabilis-EPSPS (*) also can be a promising candidate gene in other species for developing glyphosate-tolerant crops.

Genome-Wide Association Mapping for Yield and Other Agronomic Traits in an Elite Breeding Population of Tropical Rice (Oryza sativa)

PubMed Central

Lalusin, Antonio; Borromeo, Teresita; Gregorio, Glenn; Hernandez, Jose; Virk, Parminder; Collard, Bertrand; McCouch, Susan R.

2015-01-01

Genome-wide association mapping studies (GWAS) are frequently used to detect QTL in diverse collections of crop germplasm, based on historic recombination events and linkage disequilibrium across the genome. Generally, diversity panels genotyped with high density SNP panels are utilized in order to assay a wide range of alleles and haplotypes and to monitor recombination breakpoints across the genome. By contrast, GWAS have not generally been performed in breeding populations. In this study we performed association mapping for 19 agronomic traits including yield and yield components in a breeding population of elite irrigated tropical rice breeding lines so that the results would be more directly applicable to breeding than those from a diversity panel. The population was genotyped with 71,710 SNPs using genotyping-by-sequencing (GBS), and GWAS performed with the explicit goal of expediting selection in the breeding program. Using this breeding panel we identified 52 QTL for 11 agronomic traits, including large effect QTLs for flowering time and grain length/grain width/grain-length-breadth ratio. We also identified haplotypes that can be used to select plants in our population for short stature (plant height), early flowering time, and high yield, and thus demonstrate the utility of association mapping in breeding populations for informing breeding decisions. We conclude by exploring how the newly identified significant SNPs and insights into the genetic architecture of these quantitative traits can be leveraged to build genomic-assisted selection models. PMID:25785447

[Rationality of commodity criteria and traditional breeding of Polygala tenuifolia based on agronomic traits and determination of chemical components].

PubMed

Wang, Dan-Dan; Bai, Lu; Xu, Xiao-Shuang; Zhang, Fu-Sheng; Xing, Jie; Jia, Jin-Ping; Tian, Hong-Ling; Qin, Xue-Mei

2016-10-01

The agronomic traits (plant height, root diameter, root length, first lateral root height, lateral root amount, root weight) of 18 Polygala tenuifolia samples with different agronomic traits were analyzed, respectively. HPLC was used to analyze three main characteristic components including tenuifolin, polygalaxanthone Ⅲ, and 3,6'-disinapoyl sucrose. At last, the correlation between six agronomic traits and three main characteristic components were analyzed by scatter plot. We found no significant correlation between root diameter and three main characteristic components. There were no obvious correlations between tenuifolin and the remaining five agronomic traits. Short root length and first lateral root height as well as high lateral root amount resulted in high levels of polygalaxanthone Ⅲ in P. tenuifolia samples. High levels of 3,6'-disinapoyl sucrose were observed in P. tenuifolia samples with longer root. So, the current commodity criteria and traditional breeding of P. tenuifolia did not conform to pharmacopoeia standards, which excellent medicinal materials should have high contents of the main characteristic components. It was urgent to revise the current commodity criteria and breeding methods. Copyright© by the Chinese Pharmaceutical Association.

Copper accumulation in vineyard soils: Rhizosphere processes and agronomic practices to limit its toxicity.

PubMed

Brunetto, Gustavo; Bastos de Melo, George Wellington; Terzano, Roberto; Del Buono, Daniele; Astolfi, Stefania; Tomasi, Nicola; Pii, Youry; Mimmo, Tanja; Cesco, Stefano

2016-11-01

Viticulture represents an important agricultural practice in many countries worldwide. Yet, the continuous use of fungicides has caused copper (Cu) accumulation in soils, which represent a major environmental and toxicological concern. Despite being an important micronutrient, Cu can be a potential toxicant at high concentrations since it may cause morphological, anatomical and physiological changes in plants, decreasing both food productivity and quality. Rhizosphere processes can, however, actively control the uptake and translocation of Cu in plants. In particular, root exudates affecting the chemical, physical and biological characteristics of the rhizosphere, might reduce the availability of Cu in the soil and hence its absorption. In addition, this review will aim at discussing the advantages and disadvantages of agronomic practices, such as liming, the use of pesticides, the application of organic matter, biochar and coal fly ashes, the inoculation with bacteria and/or mycorrhizal fungi and the intercropping, in alleviating Cu toxicity symptoms. Copyright © 2016 Elsevier Ltd. All rights reserved.

Occurrence of Sudan I in paprika fruits caused by agricultural environmental contamination.

PubMed

Lian, Yunhe; Gao, Wei; Zhou, Li; Wu, Naiying; Lu, Qingguo; Han, Wenjie; Tie, Xiaowei

2014-05-07

Current research has demonstrated the presence of sub parts per billion levels of Sudan dye in paprika fruits during the vegetation process, which is difficult to understand on the basis of the conventional concept of cross-contamination or malicious addition. Detailed surveys on Sudan dyes I-IV in paprika fruits, soils, and agronomic materials used from seven fields of Xinjiang (China) were conducted to investigate the natural contamination. Results revealed that Sudan dyes II-IV were never detected and that Sudan I existed in almost all samples except for the mulching film and irrigation water. The higher total amount of Sudan I in soils, pesticides, and fertilizers compared to coated seeds indicated the combination of Sudan I-contaminated soils and application of Sudan I-containing agronomic materials constitutes a major source of 0.18-2.52 μg/kg levels of Sudan I in fruits during the growth period. The study offers a more reasonable explanation for the previously observed Sudan I in paprika fruits.

Agronomic, chemical and genetic profiles of hot peppers (Capsicum annuum ssp.).

PubMed

De Masi, Luigi; Siviero, Pietro; Castaldo, Domenico; Cautela, Domenico; Esposito, Castrese; Laratta, Bruna

2007-08-01

A study on morphology, productive yield, main quality parameters and genetic variability of eight landraces of hot pepper (Capsicum annuum ssp.) from Southern Italy has been performed. Morphological characters of berries and productivity values were evaluated by agronomic analyses. Chemical and genetic investigations were performed by HPLC and random amplified polymorphic DNA (RAPD)-PCR, respectively. In particular, carotenoid and capsaicinoid (pungency) contents were considered as main quality parameters of hot pepper. For the eight selected samples, genetic similarity values were calculated from the generated RAPD fragments and a dendrogram of genetic similarity was constructed. All the eight landraces exhibited characteristic RAPD patterns that allowed their characterization. Agro-morphological and chemical determinations were found to be adequate for selection, but they resulted useful only for plants grown in the same environmental conditions. RAPD application may provide a more reliable way based on DNA identification. The results of our study led to the identification of three noteworthy populations, suitable for processing, which fitted into different clusters of the dendrogram.

A novel fuzzy expert system to assess the sustainability of the viticulture at the wine-estate scale.

PubMed

Lamastra, L; Balderacchi, M; Di Guardo, A; Monchiero, M; Trevisan, M

2016-12-01

The wine industry is definitely committed in sustainability: the stakeholders' interest for the topic is constantly growing and a wide number of sustainability programs have been launched in recent years. Most of these programs are focusing on the environmental aspects as environmental sustainability indicators, greenhouse gases emissions and the use of Life Cycle Assessment methodology. Among the environmental indicators the carbon and the water footprint are often used. These indicators, while being useful to assess the sustainability performance of the winegrowing farms, do not take into account important aspects related to the agronomic management of the vineyard. To fill this gap a new indicator called "Vigneto" (Vineyard in Italian language) has been developed. "Vigneto" is a multidimensional indicator to evaluate the sustainability of management options adopted at field scale. It considers the main agronomic aspects, which can have an impact on the environment. These include (i) pest management, (ii) soil management (erosion and compaction), (iii) fertility management (soil organic matter management and fertilizer application), (iv) biodiversity management. Those aspects have been related by fuzzy logics and implemented in web GIS software. The application of the model allows obtaining a general judgment of the agronomic sustainability of the vineyard management: the judgment varies from "A" (excellent) to "E" (completely unsustainable). The produced model was validated and tested by four Italian wine estate. The model output reports that the tested wineries have different management strategies: producers manage vineyards in different ways, depending on the different geographical position. The main differences are related to the soil management and to the presence of natural areas different from vineyard. The developed model can be defined as an environmental decision support system that can be used by wine companies' technicians to define the vineyard practices sustainability performance and support them in the definition of more sustainable management practices. Copyright © 2016. Published by Elsevier B.V.

Effect of Fertilization on Soil Fertility and Nutrient Use Efficiency at Potatoes

NASA Astrophysics Data System (ADS)

Neshev, Nesho; Manolov, Ivan

2016-04-01

The effect of fertilization on soil fertility, yields and nutrient use efficiency of potatoes grown under field experimental conditions was studied. The trail was conducted on shallow brown forest soil (Cambisols-coarse) during the vegetation periods of 2013 to 2015. The variants of the experiment were: control, N140; P80; K100; N140P80; N140K100; P80K100; N140P80K100; N140P80K100Mg33. The applied fertilization slightly decreased soil's pH after the harvest of potatoes compared to the soil pH their planting. Decreasing of pH was more severe at variant N (from 5,80 to 4,19 in 2014). The mineral nitrogen content in the soil after the harvest of potatoes was lower for the variants P, K and PK. The positive effect of fertilization on soil fertility after the end of the trails was more pronounced at variants NPK and NPKMg. The content of available nitrogen, phosphorus and potassium forms for these variants was the highest for each year. The highest content of mineral nitrogen was observed in 2013 (252,5 and 351,1 mg/1000g, respectively for variants NPK and NPKMg). It was due to extremely dry weather conditions during the vegetation in this year. Soil content of mineral N for the next two years was lower. The same tendency was observed for phosphorus and potassium was observed. In 2013 the P2O5 and K2O content in soil was the highest for the variants with full mineral fertilization - NPK (64,4 and 97,6 mg 100g-1 respectively for P2O5 and K2O) and NPKMg (65,2 and 88,0 mg 100g-1 respectively for P2O5 and K2O). The highest yields were recorded at variants NPK and NPKMg - 24,21 and 22,01 t ha-1, average for the studied period. The yield of variant NPK was 25 % higher than the yield from variant NP and 68 % higher than control. The partial factor productivity (PFPN, PFPP and PFPK) of the applied fertilizers was the highest at variant NPK. The PFPN (80,10 kg kg-1) for the yields of variant N was 57 % lower than the PFPN at variant NPK (180,36 kg kg-1). The PFPP and PFPK at variants P and K was approximately 57 and 47 % lower compared with variant NPK. Agronomic efficiency (AE) of applied nutrient was the highest for the combined NPK fertilization. The application only of N, P, K and PK combination without N was agronomically not effective practice. The combined NPK and NPKMg variants ensure the highest yields. The indicators of nutrient use efficiency (PFP and AE) were also the highest at these variants. Key words: Soil fertility, nutrient use efficiency, potatoes, yields,

A Regionally-Specific Assessment of the Carbon Abatement Potential of Biochar

NASA Astrophysics Data System (ADS)

Birch, G.; Field, J.; Keske, C.; DeFoort, M.; Cotrufo, M.

2012-12-01

Biochar, the solid carbon-rich co-product of certain bioenergy conversion technologies, is receiving a great deal of attention as a strategy for sequestering carbon in soils and improving the performance of agricultural systems. Several studies have attempted to quantify the lifecycle carbon abatement potential of biochar systems, considering emissions associated with feedstock provisioning and processing, energy co-production, agronomic system impacts (yield increases and nitrous oxide emission suppression), and the recalcitrance of biochar in soil, as well as accounting for the carbon abatement value of using the char as a fuel that is foregone when it is used as a soil amendment instead. These assessments typically focus on biochar production in advanced, efficient slow pyrolysis systems, despite the fact that much biochar is currently produced through small-scale carbonization or gasification systems that lack energy recovery or even emission control capability. Here, a mechanistic biochar system assessment model is presented, capable of estimating system carbon abatement value and profitability for different feedstocks, conversion technologies and temperatures, and application into different agricultural soils. The variation of biochar recalcitrance in soil as a function of production temperature is considered, and agricultural impacts are assessed in the context of biochar's liming value, an effect that is straightforward to quantify and that has often been implicated in observed crop yield increases or nitrous oxide emission reductions. The analysis is rigorous in that tradeoffs between biochar production quantity and quality are endogenized, but conservative in that other potential agronomic benefits of biochar (e.g. improved soil water holding capacity) are not considered. This model is applied to a case study of bioenergy and biochar co-production in northern Colorado using beetle-killed pine wood and slash as a feedstock. Preliminary results suggest that a) high system carbon abatement potentials are possible in the case study scenario, but only in systems that control air pollutant emissions and recover energy; b) biochar has more value as a soil amendment than a fuel when produced at high temperatures and applied to soils of low pH and low buffering capacity; and c) the carbon abatement value of agronomic impacts in temperate systems is relatively minor compared to other parts of the lifecycle. Additional results will be presented for which an optimal system design is identified and the analysis scaled-up to reflect the total beetle-kill feedstock availability in the state of Colorado in order to estimate the total regional carbon-mitigation potential of the technology.

Vegetation and Soil Responses to Concrete Grinding Residue Application on Highway Roadsides of Eastern Nebraska.

PubMed

Wingeyer, Ana; Mamo, Martha; Schacht, Walter; McCallister, Dennis; Sutton, Pamela

2018-05-01

As a precautionary principle, the National Pollutant Discharge Elimination System (NPDES) permit establishes that the primary pollutant in concrete grinding residue (CGR) is its alkalinity and restricts CGR roadside discharge to 11 Mg ha or the agronomic liming rate, whichever is lower. We evaluated the effect of CGR application on roadside soil chemical properties, existing vegetation, and rainfall runoff. Five CGR rates (0, 11, 22, 45, and 90 dry Mg ha) were tested on roadsides slopes at two different locations in eastern Nebraska. Vegetation, soil, and runoff characteristics were evaluated before CGR application and 30 d and 1 yr after CGR application. Soil pH of control plots averaged 8.3 and 8.5 for each site respectively, across depths and slope positions, thus not requiring any liming for agronomic purposes. Soil electrical conductivity (EC, 1:1) averages of control plots were 0.79 and 1.24 dS m across depths and slope positions. In the short term (30 d) the highest CGR application affected the 0- to 7.5-cm soil depth by increasing soil extractable Ca (21 and 25% for each site, respectively), soil pH (0.2, south site), and soil EC (0.2 dS m) compared with the control. However, these changes in soil did not persist 1 yr after CGR application. The pH buffering capacity of soil prevented post-CGR-application pH from exceeding 8.9, even at the highest application rate. Application of CGR did not produce any differences in biomass production, botanical composition, and runoff characteristics at either site. From our study, CGR up to ?90 dry Mg ha-about the amount produced during diamond grinding operations-can be one-time applied to roadside soils of similar characteristics on already established vegetation. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Integrating Agronomic Principles with Management Experience in Introductory Agronomy.

ERIC Educational Resources Information Center

Vorst, J. J.

1989-01-01

Explains the use of a cropping systems project to teach agronomic principles and crop management techniques, and to enhance communication skills. Provides a sample progress report instructions sheet which was used for the project. (Author/RT)

Net Fluxes of CO2, but not N20 or CH4, are Affected Following Agronomic-Scale Additions of Urea to Prairie and Arable Soils

USDA-ARS?s Scientific Manuscript database

Microbial production of carbon dioxide (CO2) increased with nitrogen (N) application rate for both arable and prairie soils incubated at 21 °C. Rate of N applied as urea (0, 11, 56, 112 kg N ha-1) did not affect soil methane consumption and nitrous oxide production for soil collected from either ec...

Agronomic properties of wastewater sludge biochar and bioavailability of metals in production of cherry tomato (Lycopersicon esculentum).

PubMed

Hossain, Mustafa K; Strezov, Vladimir; Chan, K Yin; Nelson, Peter F

2010-02-01

This work presents agronomic values of a biochar produced from wastewater sludge through pyrolysis at a temperature of 550 degrees C. In order to investigate and quantify effects of wastewater sludge biochar on soil quality, growth, yield and bioavailability of metals in cherry tomatoes, pot experiments were carried out in a temperature controlled environment and under four different treatments consisting of control soil, soil with biochar; soil with biochar and fertiliser, and soil with fertiliser only. The soil used was chromosol and the applied wastewater sludge biochar was 10tha(-1). The results showed that the application of biochar improves the production of cherry tomatoes by 64% above the control soil conditions. The ability of biochar to increase the yield was attributed to the combined effect of increased nutrient availability (P and N) and improved soil chemical conditions upon amendment. The yield of cherry tomato production was found to be at its maximum when biochar was applied in combination with the fertiliser. Application of biochar was also found to significantly increase the soil electrical conductivity as well as phosphorus and nitrogen contents. Bioavailability of metals present in the biochar was found to be below the Australian maximum permitted concentrations for food. Copyright (c) 2009 Elsevier Ltd. All rights reserved.

Soil Fungal Resources in Annual Cropping Systems and Their Potential for Management

PubMed Central

Esmaeili Taheri, Ahmad; Bainard, Luke D.; Yang, Chao; Navarro-Borrell, Adriana; Hamel, Chantal

2014-01-01

Soil fungi are a critical component of agroecosystems and provide ecological services that impact the production of food and bioproducts. Effective management of fungal resources is essential to optimize the productivity and sustainability of agricultural ecosystems. In this review, we (i) highlight the functional groups of fungi that play key roles in agricultural ecosystems, (ii) examine the influence of agronomic practices on these fungi, and (iii) propose ways to improve the management and contribution of soil fungi to annual cropping systems. Many of these key soil fungal organisms (i.e., arbuscular mycorrhizal fungi and fungal root endophytes) interact directly with plants and are determinants of the efficiency of agroecosystems. In turn, plants largely control rhizosphere fungi through the production of carbon and energy rich compounds and of bioactive phytochemicals, making them a powerful tool for the management of soil fungal diversity in agriculture. The use of crop rotations and selection of optimal plant genotypes can be used to improve soil biodiversity and promote beneficial soil fungi. In addition, other agronomic practices (e.g., no-till, microbial inoculants, and biochemical amendments) can be used to enhance the effect of beneficial fungi and increase the health and productivity of cultivated soils. PMID:25247177

Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean.

PubMed

Fang, Chao; Ma, Yanming; Wu, Shiwen; Liu, Zhi; Wang, Zheng; Yang, Rui; Hu, Guanghui; Zhou, Zhengkui; Yu, Hong; Zhang, Min; Pan, Yi; Zhou, Guoan; Ren, Haixiang; Du, Weiguang; Yan, Hongrui; Wang, Yanping; Han, Dezhi; Shen, Yanting; Liu, Shulin; Liu, Tengfei; Zhang, Jixiang; Qin, Hao; Yuan, Jia; Yuan, Xiaohui; Kong, Fanjiang; Liu, Baohui; Li, Jiayang; Zhang, Zhiwu; Wang, Guodong; Zhu, Baoge; Tian, Zhixi

2017-08-24

Soybean (Glycine max [L.] Merr.) is one of the most important oil and protein crops. Ever-increasing soybean consumption necessitates the improvement of varieties for more efficient production. However, both correlations among different traits and genetic interactions among genes that affect a single trait pose a challenge to soybean breeding. To understand the genetic networks underlying phenotypic correlations, we collected 809 soybean accessions worldwide and phenotyped them for two years at three locations for 84 agronomic traits. Genome-wide association studies identified 245 significant genetic loci, among which 95 genetically interacted with other loci. We determined that 14 oil synthesis-related genes are responsible for fatty acid accumulation in soybean and function in line with an additive model. Network analyses demonstrated that 51 traits could be linked through the linkage disequilibrium of 115 associated loci and these links reflect phenotypic correlations. We revealed that 23 loci, including the known Dt1, E2, E1, Ln, Dt2, Fan, and Fap loci, as well as 16 undefined associated loci, have pleiotropic effects on different traits. This study provides insights into the genetic correlation among complex traits and will facilitate future soybean functional studies and breeding through molecular design.

Environmental Impacts of Jatropha curcas Biodiesel in India

PubMed Central

Gmünder, Simon; Singh, Reena; Pfister, Stephan; Adheloya, Alok; Zah, Rainer

2012-01-01

In the context of energy security, rural development and climate change, India actively promotes the cultivation of Jatropha curcas, a biodiesel feedstock which has been identified as suitable for achieving the Indian target of 20% biofuel blending by 2017. In this paper, we present results concerning the range of environmental impacts of different Jatropha curcas cultivation systems. Moreover, nine agronomic trials in Andhra Pradesh are analysed, in which the yield was measured as a function of different inputs such as water, fertilizer, pesticides, and arbuscular mycorrhizal fungi. Further, the environmental impact of the whole Jatropha curcas biodiesel value chain is benchmarked with fossil diesel, following the ISO 14040/44 life cycle assessment procedure. Overall, this study shows that the use of Jatropha curcas biodiesel generally reduces the global warming potential and the nonrenewable energy demand as compared to fossil diesel. On the other hand, the environmental impacts on acidification, ecotoxicity, eutrophication, and water depletion all showed increases. Key for reducing the environmental impact of Jatropha curcas biodiesel is the resource efficiency during crop cultivation (especially mineral fertilizer application) and the optimal site selection of the Jatropha curcas plantations. PMID:22919274

Environmental impacts of Jatropha curcas biodiesel in India.

PubMed

Gmünder, Simon; Singh, Reena; Pfister, Stephan; Adheloya, Alok; Zah, Rainer

2012-01-01

In the context of energy security, rural development and climate change, India actively promotes the cultivation of Jatropha curcas, a biodiesel feedstock which has been identified as suitable for achieving the Indian target of 20% biofuel blending by 2017. In this paper, we present results concerning the range of environmental impacts of different Jatropha curcas cultivation systems. Moreover, nine agronomic trials in Andhra Pradesh are analysed, in which the yield was measured as a function of different inputs such as water, fertilizer, pesticides, and arbuscular mycorrhizal fungi. Further, the environmental impact of the whole Jatropha curcas biodiesel value chain is benchmarked with fossil diesel, following the ISO 14040/44 life cycle assessment procedure. Overall, this study shows that the use of Jatropha curcas biodiesel generally reduces the global warming potential and the nonrenewable energy demand as compared to fossil diesel. On the other hand, the environmental impacts on acidification, ecotoxicity, eutrophication, and water depletion all showed increases. Key for reducing the environmental impact of Jatropha curcas biodiesel is the resource efficiency during crop cultivation (especially mineral fertilizer application) and the optimal site selection of the Jatropha curcas plantations.

Envirotyping for deciphering environmental impacts on crop plants.

PubMed

Xu, Yunbi

2016-04-01

Global climate change imposes increasing impacts on our environments and crop production. To decipher environmental impacts on crop plants, the concept "envirotyping" is proposed, as a third "typing" technology, complementing with genotyping and phenotyping. Environmental factors can be collected through multiple environmental trials, geographic and soil information systems, measurement of soil and canopy properties, and evaluation of companion organisms. Envirotyping contributes to crop modeling and phenotype prediction through its functional components, including genotype-by-environment interaction (GEI), genes responsive to environmental signals, biotic and abiotic stresses, and integrative phenotyping. Envirotyping, driven by information and support systems, has a wide range of applications, including environmental characterization, GEI analysis, phenotype prediction, near-iso-environment construction, agronomic genomics, precision agriculture and breeding, and development of a four-dimensional profile of crop science involving genotype (G), phenotype (P), envirotype (E) and time (T) (developmental stage). In the future, envirotyping needs to zoom into specific experimental plots and individual plants, along with the development of high-throughput and precision envirotyping platforms, to integrate genotypic, phenotypic and envirotypic information for establishing a high-efficient precision breeding and sustainable crop production system based on deciphered environmental impacts.

Field-based estimates of global warming potential in bioenergy systems of Hawaii: Crop choice and deficit irrigation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pawlowski, Meghan N.; Crow, Susan E.; Meki, Manyowa N.

Replacing fossil fuel with biofuel is environmentally viable from a climate change perspective only if the net greenhouse gas (GHG) footprint of the system is reduced. The effects of replacing annual arable crops with perennial bioenergy feedstocks on net GHG production and soil carbon (C) stock are critical to the system-level balance. Here, we compared GHG flux, crop yield, root biomass, and soil C stock under two potential tropical, perennial grass biofuel feedstocks: conventional sugarcane and ratoon-harvested, zero-tillage napiergrass. Evaluations were conducted at two irrigation levels, 100% of plantation application and at a 50% deficit. Peaks and troughs of GHGmore » emission followed agronomic events such as ratoon harvest of napiergrass and fertilization. Yet, net GHG flux was dominated by carbon dioxide (CO 2), as methane was oxidized and nitrous oxide (N 2O) emission was very low even following fertilization. High N 2O fluxes that frequently negate other greenhouse gas benefits that come from replacing fossil fuels with agronomic forms of bioenergy were mitigated by efficient water and fertilizer management, including direct injection of fertilizer into buried irrigation lines. From soil intensively cultivated for a century in sugarcane, soil C stock and root biomass increased rapidly following cultivation in grasses selected for robust root systems and drought tolerance. The net soil C increase over the two-year crop cycle was three-fold greater than the annualized soil surface CO 2 flux. Furthermore, deficit irrigation reduced yield, but increased soil C accumulation as proportionately more photosynthetic resources were allocated below ground. In the first two years of cultivation napier grass did not increase net greenhouse warming potential (GWP) compared to sugarcane, and has the advantage of multiple ratoon harvests per year and less negative effects of deficit irrigation to yield.« less

Field-based estimates of global warming potential in bioenergy systems of Hawaii: Crop choice and deficit irrigation

DOE PAGES

Pawlowski, Meghan N.; Crow, Susan E.; Meki, Manyowa N.; ...

2017-01-04

Replacing fossil fuel with biofuel is environmentally viable from a climate change perspective only if the net greenhouse gas (GHG) footprint of the system is reduced. The effects of replacing annual arable crops with perennial bioenergy feedstocks on net GHG production and soil carbon (C) stock are critical to the system-level balance. Here, we compared GHG flux, crop yield, root biomass, and soil C stock under two potential tropical, perennial grass biofuel feedstocks: conventional sugarcane and ratoon-harvested, zero-tillage napiergrass. Evaluations were conducted at two irrigation levels, 100% of plantation application and at a 50% deficit. Peaks and troughs of GHGmore » emission followed agronomic events such as ratoon harvest of napiergrass and fertilization. Yet, net GHG flux was dominated by carbon dioxide (CO 2), as methane was oxidized and nitrous oxide (N 2O) emission was very low even following fertilization. High N 2O fluxes that frequently negate other greenhouse gas benefits that come from replacing fossil fuels with agronomic forms of bioenergy were mitigated by efficient water and fertilizer management, including direct injection of fertilizer into buried irrigation lines. From soil intensively cultivated for a century in sugarcane, soil C stock and root biomass increased rapidly following cultivation in grasses selected for robust root systems and drought tolerance. The net soil C increase over the two-year crop cycle was three-fold greater than the annualized soil surface CO 2 flux. Furthermore, deficit irrigation reduced yield, but increased soil C accumulation as proportionately more photosynthetic resources were allocated below ground. In the first two years of cultivation napier grass did not increase net greenhouse warming potential (GWP) compared to sugarcane, and has the advantage of multiple ratoon harvests per year and less negative effects of deficit irrigation to yield.« less

Genomic selection of agronomic traits in hybrid rice using an NCII population.

PubMed

Xu, Yang; Wang, Xin; Ding, Xiaowen; Zheng, Xingfei; Yang, Zefeng; Xu, Chenwu; Hu, Zhongli

2018-05-10

Hybrid breeding is an effective tool to improve yield in rice, while parental selection remains the key and difficult issue. Genomic selection (GS) provides opportunities to predict the performance of hybrids before phenotypes are measured. However, the application of GS is influenced by several genetic and statistical factors. Here, we used a rice North Carolina II (NC II) population constructed by crossing 115 rice varieties with five male sterile lines as a model to evaluate effects of statistical methods, heritability, marker density and training population size on prediction for hybrid performance. From the comparison of six GS methods, we found that predictabilities for different methods are significantly different, with genomic best linear unbiased prediction (GBLUP) and least absolute shrinkage and selection operation (LASSO) being the best, support vector machine (SVM) and partial least square (PLS) being the worst. The marker density has lower influence on predicting rice hybrid performance compared with the size of training population. Additionally, we used the 575 (115 × 5) hybrid rice as a training population to predict eight agronomic traits of all hybrids derived from 120 (115 + 5) rice varieties each mating with 3023 rice accessions from the 3000 rice genomes project (3 K RGP). Of the 362,760 potential hybrids, selection of the top 100 predicted hybrids would lead to 35.5%, 23.25%, 30.21%, 42.87%, 61.80%, 75.83%, 19.24% and 36.12% increase in grain yield per plant, thousand-grain weight, panicle number per plant, plant height, secondary branch number, grain number per panicle, panicle length and primary branch number, respectively. This study evaluated the factors affecting predictabilities for hybrid prediction and demonstrated the implementation of GS to predict hybrid performance of rice. Our results suggest that GS could enable the rapid selection of superior hybrids, thus increasing the efficiency of rice hybrid breeding.

Deciphering the Environmental Impacts on Rice Quality for Different Rice Cultivated Areas.

PubMed

Li, Xiukun; Wu, Lian; Geng, Xin; Xia, Xiuhong; Wang, Xuhong; Xu, Zhengjin; Xu, Quan

2018-01-19

Rice (Oryza sativa L.) is cultivated in a wide range of climatic conditions, and is one of mankind's major staple foods. The interaction of environmental factors with genotype effects major agronomic traits such as yield, quality, and resistance in rice. However, studies on the environmental factors affecting agronomic traits are often difficult to conduct because most environmental factors are dynamic and constantly changing. A series of recombinant inbred lines (RILs) derived from an indica/japonica cross were planted into four typical rice cultivated areas arranging from latitude N22° to N42°. The environmental data from the heading to mature (45 days) stages were recorded for each RIL in the four areas. We determined that light, temperature, and humidity significantly affected the milling quality and cooking quality overall the four areas. Within each area, these environmental factors mainly affected the head rice ratio, grain length, alkali consumption, and amylose and protein content. Moreover, the effect of these environmental factors dynamically changed from heading to mature stage. Compared to light and humidity, temperature was more stable and predictable, and night temperature showed a stronger correlation efficiency to cooking quality than day temperature, and the daily temperature range had contrary effects compared to day and night temperature on grain quality. The present study evaluated the critical phase during the grain filling stage by calculating the dynamic changes of correlation efficiency between the quality traits and climate parameters. Our findings suggest that the sowing date could be adjusted to improve rice quality so as to adjust for environmental changes.

Probing Phosphorus Efficient Low Phytic Acid Content Soybean Genotypes with Phosphorus Starvation in Hydroponics Growth System.

PubMed

Kumar, Varun; Singh, Tiratha Raj; Hada, Alkesh; Jolly, Monica; Ganapathi, Andy; Sachdev, Archana

2015-10-01

Phosphorus is an essential nutrient required for soybean growth but is bound in phytic acid which causes negative effects on both the environment as well as the animal nutrition. Lowering of phytic acid levels is associated with reduced agronomic characteristics, and relatively little information is available on the response of soybean plants to phosphorus (P) starvation. In this study, we evaluated the effects of different P starvation concentrations on the phytic acid content, growth, and yield of seven mutant genotypes along with the unirradiated control, JS-335, in a hydroponics growth system. The low phytic acid containing mutant genotypes, IR-JS-101, IR-DS-118, and IR-V-101, showed a relatively high growth rate in low P concentration containing nutrient solution (2 μM), whereas the high P concentration (50 μM) favored the growth of IR-DS-111 and IR-DS-115 mutant genotypes containing moderate phytate levels. The mutant genotypes with high phytic acid content, IR-DS-122, IR-DS-114, and JS-335, responded well under P starvation and did not have any significant effect on the growth and yield of plants. Moreover, the reduction of P concentration in nutrient solution from 50 to 2 μM also reduced the phytic acid content in the seeds of all the soybean genotypes under study. The desirable agronomic performance of low phytic acid containing mutant genotype IR-DS-118 reported in this study suggested it to be a P-efficient genotype which could be considered for agricultural practices under P limiting soils.

A Survey of Fertilizer Dealers: I. Sources of Agronomic Training.

ERIC Educational Resources Information Center

Schmitt, M. A.

1988-01-01

Reports on a survey of fertilizer dealers which was conducted to: assess where and from whom local fertilizer dealers obtain agronomic training; evaluate the effectiveness of various dealer training; and determine the needs and objectives of future training programs. (TW)

A Survey of Fertilizer Dealers: II. Sources of Agronomic Information.

ERIC Educational Resources Information Center

Schmitt, M. A.

1988-01-01

Reports on a survey of fertilizer dealers that was conducted to assess how the dealers were obtaining their agronomic information, aside from formal training sessions, and determine if these sources of information were satisfactory in fulfilling the dealers' needs. (TW)

Marker-assisted backcross approach for important agronomic traits of sorghum

USDA-ARS?s Scientific Manuscript database

Sequencing technologies are useful for identification of thousands of single nucleotide polymorphisms (SNPs) in a cost effective manner. QTL mapping, association mapping and Mutmap approaches provide opportunities for use of such SNPs to associate and identify genes that control important agronomic ...

Biochar: A synthesis of its agronomic impact beyond carbon sequestration

USDA-ARS?s Scientific Manuscript database

Biochar has been recently heralded as an amendment to revitalize degraded soils, improve soil carbon sequestration, increase agronomic productivity and enter into future carbon trading markets. However, scientific and economic technicalities may limit the ability of biochar to consistently deliver o...

Chloroplast genomes: diversity, evolution, and applications in genetic engineering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Daniell, Henry; Lin, Choun -Sea; Yu, Ming

Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800 sequenced chloroplast genomes from a variety of land plants has enhanced our understanding of chloroplast biology, intracellular gene transfer, conservation, diversity, and the genetic basis by which chloroplast transgenes can be engineered to enhance plant agronomic traits or to produce high-value agricultural or biomedical products. In this review, we discuss the impact of chloroplast genome sequences on understanding the origins of economically important cultivated species and changes that have taken place during domestication. Here, we also discuss the potential biotechnological applications of chloroplast genomes.

Chloroplast genomes: diversity, evolution, and applications in genetic engineering

DOE PAGES

Daniell, Henry; Lin, Choun -Sea; Yu, Ming; ...

2016-06-23

Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800 sequenced chloroplast genomes from a variety of land plants has enhanced our understanding of chloroplast biology, intracellular gene transfer, conservation, diversity, and the genetic basis by which chloroplast transgenes can be engineered to enhance plant agronomic traits or to produce high-value agricultural or biomedical products. In this review, we discuss the impact of chloroplast genome sequences on understanding the origins of economically important cultivated species and changes that have taken place during domestication. Here, we also discuss the potential biotechnological applications of chloroplast genomes.

Agronomic performance of F1, F2 and F3 hybrids between weedy rice and transgenic glufosinate-resistant rice.

PubMed

Song, Xiaoling; Wang, Zhou; Qiang, Sheng

2011-08-01

Studies of hybrid fitness, of which agronomic performance may be an indicator, can help in evaluating the potential for introgression of a transgene from a transgenic crop to wild relatives. The objective of this study was to assess the agronomic performance of reciprocal hybrids between two transgenic glufosinate-resistant rice lines, Y0003 and 99-t, and two weedy rice accessions, WR1 and WR2, in the greenhouse. F1 hybrids displayed heterosis in height, flag leaf area and number of spikelets per panicle. The agronomic performance of F1 between WR1 and Y0003 was not affected by crossing direction. The tiller and panicle numbers of F1 individuals were higher than their F2 counterparts. However, these traits did not change significantly from the F2 to the F3 generation or in hybrids with weedy rice as maternal or paternal plants. For all hybrids, the in vitro germination rates of fresh pollen were similar and significantly lower than those of their parents, seed sets were similar to or of lower value than those of weedy rice parents and seed shattering characteristics were partially suppressed, but the survival of hybrids over winter in the field was similar to that of weedy rice parents. All F1, F2 and F3 hybrids had similar composite agronomic performance to weedy rice parents. There was no significant decrease in the composite agronomic performance of any of the hybrids compared with weedy rice. This implies that gene flow from transgenic cultivated rice to weedy rice could occur under natural conditions. Copyright © 2011 Society of Chemical Industry.

Agronomic Traits and Molecular Marker Identification of Wheat–Aegilops caudata Addition Lines

PubMed Central

Gong, Wenping; Han, Ran; Li, Haosheng; Song, Jianmin; Yan, Hongfei; Li, Genying; Liu, Aifeng; Cao, Xinyou; Guo, Jun; Zhai, Shengnan; Cheng, Dungong; Zhao, Zhendong; Liu, Cheng; Liu, Jianjun

2017-01-01

Aegilops caudata is an important gene source for wheat breeding. Intensive evaluation of its utilization value is an essential first step prior to its application in breeding. In this research, the agronomical and quality traits of Triticum aestivum-Ae. caudata additions B–G (homoeologous groups not identified) were analyzed and evaluated. Disease resistance tests showed that chromosome D of Ae. caudata might possess leaf rust resistance, and chromosome E might carry stem rust and powdery mildew resistance genes. Investigations into agronomical traits suggested that the introduction of the Ae. caudata chromosome in addition line F could reduce plant height. Grain quality tests showed that the introduction of chromosomes E or F into wheat could increase its protein and wet gluten content. Therefore, wheat-Ae. caudata additions D–F are all potentially useful candidates for chromosome engineering activities to create useful wheat-alien chromosome introgressions. A total of 55 EST-based molecular markers were developed and then used to identify the chromosome homoeologous group of each of the Ae. caudata B–G chromosomes. Marker analysis indicated that the Ae. caudata chromosomes in addition lines B to G were structurally altered, therefore, a large population combined with intensive screening pressure should be taken into consideration when inducing and screening for wheat-Ae. caudata compensating translocations. Marker data also indicated that the Ae. caudata chromosomes in addition lines C–F were 5C, 6C, 7C, and 3C, respectively, while the homoeologous group of chromosomes B and G of Ae. caudata are as yet undetermined and need further research. PMID:29075275

Light-Weight Multispectral Uav Sensors and Their Capabilities for Predicting Grain Yield and Detecting Plant Diseases

NASA Astrophysics Data System (ADS)

Nebiker, S.; Lack, N.; Abächerli, M.; Läderach, S.

2016-06-01

In this paper we investigate the performance of new light-weight multispectral sensors for micro UAV and their application to selected tasks in agronomical research and agricultural practice. The investigations are based on a series of flight campaigns in 2014 and 2015 covering a number of agronomical test sites with experiments on rape, barley, onion, potato and other crops. In our sensor comparison we included a high-end multispectral multiSPEC 4C camera with bandpass colour filters and reference channel in zenith direction and a low-cost, consumer-grade Canon S110 NIR camera with Bayer pattern colour filters. Ground-based reference measurements were obtained using a terrestrial hyperspectral field spectrometer. The investigations show that measurements with the high-end system consistently match very well with ground-based field spectrometer measurements with a mean deviation of just 0.01-0.04 NDVI values. The low-cost system, while delivering better spatial resolutions, expressed significant biases. The sensors were subsequently used to address selected agronomical questions. These included crop yield estimation in rape and barley and plant disease detection in potato and onion cultivations. High levels of correlation between different vegetation indices and reference yield measurements were obtained for rape and barley. In case of barley, the NDRE index shows an average correlation of 87% with reference yield, when species are taken into account. With high geometric resolutions and respective GSDs of down to 2.5 cm the effects of a thrips infestation in onion could be analysed and potato blight was successfully detected at an early stage of infestation.

Unmanned aerial vehicles for high-throughput phenotyping and agronomic research

USDA-ARS?s Scientific Manuscript database

Advances in automation and data science have led agriculturists to seek real-time, high-quality, high-volume crop data to accelerate crop improvement through breeding and to optimize agronomic practices. Breeders have recently gained massive data-collection capability in genome sequencing of plants....

Linkages Among Agronomic, Environmental and Weed Management Characteristics in North American Sweet Corn

USDA-ARS?s Scientific Manuscript database

Performance of weed management systems varies greatly across the landscape in both growers’ fields and in experimental trials conducted by agricultural scientists. Using agronomic, environmental, and weed management information from growers’ fields and experimental trials, we identified dominant ch...

Genetic dissection of agronomically important traits in closely related temperate japonica rice cultivars

PubMed Central

Hori, Kiyosumi; Yamamoto, Toshio; Yano, Masahiro

2017-01-01

Many quantitative trait loci (QTLs) for agronomically important traits such as grain yield, disease resistance, and stress tolerance of rice (Oryza sativa L.) have been detected by using segregating populations derived from crosses between indica and japonica subspecies or with wild relatives. However, the QTLs involved in the control of natural variation in agronomic traits among closely related cultivars are still unclear. Decoding the whole genome sequences of Nipponbare and other temperate japonica rice cultivars has accelerated the collection of a huge number of single nucleotide polymorphisms (SNPs). These SNPs are good resource for developing polymorphic DNA markers and for detecting QTLs distributed across all rice chromosomes. The temperate japonica rice cultivar Koshihikari has remained the top cultivar for about 40 years since 1979 in Japan. Unraveling the genetic factors in Koshihikari will provide important insights into improving agronomic traits in temperate japonica rice cultivars. Here we describe recent progress in our studies as an example of genetic analysis in closely related cultivars. PMID:29398936

[Response of yield, quality and nitrogen use efficiency to nitrogen fertilizer from mechanical transplanting super japonica rice].

PubMed

Wei, Hai-Yan; Wang, Ya-Jiang; Meng, Tian-Yao; Ge, Meng-Jie; Zhang, Hong-Cheng; Dai, Qi-Gen; Huo, Zhong-Yang; Xu, Ke

2014-02-01

Five super japonica rice cultivars were grown by mechanical transplanting in field and seven N treatments with total N application rate of 0, 150, 187.5, 225, 262.5, 300 and 337.5 kg x hm(-2) respectively were adopted to study the effects of N rate on rice yield, quality and N use efficiency. The differences between N requirement for obtaining the highest yield and for achieving the best economic benefit were compared. With the increase of N fertilizer rate, the yields of five super japonica rice cultivars increased firstly and then descended, achieving the highest yield at the N level of 300 kg x hm(-2) ranging from 10.33-10.60 kg x hm(-2). Yield increase mainly attributed to the large number of spikelet, for the total spikelet number of each rice cultivar reached the maximum value at the 300 kg x hm(-2) N level. With the increase of N application, the rates of brown rice, milled rice, head milled rice and the protein content of the five super japonica rice cultivars were all increased, and the rates of brown rice, milled rice, head milled rice and the protein con- tent were higher at 337.5 kg x hm(-2) N level than at 0 kg x hm(-2) N level by 3.3%-4.2%, 2.9%-6.0%, 4.4%-33.7% and 23.8%-44.3%, respectively. While the amylose content, gel consistency and taste value of the five rice cultivars were all decreased, and the amylose content, gel consistency and taste value were lower at 337.5 kg x hm(-2) N level than at 0 kg x hm(-2) N level by 12.4%-38.9%, 10.3%-28.5% and 20.3%-29.7%, respectively. The chalkiness increased firstly and then decreased while the change of chalky rate varied with the cultivars. With the increase of N application, the N use efficiency, agronomic N use efficiency and physiological N use efficiency decreased while the N uptake of grain increased significantly. If the cost of N fertilizer was taken into account, the N fertilizer amount to obtain the optimal economic benefits would be 275.68 kg x hm(-2) with the corresponding yield of 9.97 t x hm(-2). Therefore, in the existing super rice production, classified management of N fertilizer would be required to meet differentiated demands of high yield, good quality, high efficiency, low N fertilizer input and so on.

Use of natural variation to identify loci associated with relevant agronomic phenotypic traits

USDA-ARS?s Scientific Manuscript database

Analysis of natural allelic variation is a useful discovery tool to identify novel alleles in genes and pathways that are consistent with agronomic productivity and environmental stability. Switchgrass, a native perennial North American prairie grass and emerging biofuel feedstock species, is divide...

Quantitative trait loci mapping for Gibberella ear rot resistance and associated agronomic traits using genotyping-by-sequencing in maize.

PubMed

Kebede, Aida Z; Woldemariam, Tsegaye; Reid, Lana M; Harris, Linda J

2016-01-01

Unique and co-localized chromosomal regions affecting Gibberella ear rot disease resistance and correlated agronomic traits were identified in maize. Dissecting the mechanisms underlying resistance to Gibberella ear rot (GER) disease in maize provides insight towards more informed breeding. To this goal, we evaluated 410 recombinant inbred lines (RIL) for GER resistance over three testing years using silk channel and kernel inoculation techniques. RILs were also evaluated for agronomic traits like days to silking, husk cover, and kernel drydown rate. The RILs showed significant genotypic differences for all traits with above average to high heritability estimates. Significant (P < 0.01) but weak genotypic correlations were observed between disease severity and agronomic traits, indicating the involvement of agronomic traits in disease resistance. Common QTLs were detected for GER resistance and kernel drydown rate, suggesting the existence of pleiotropic genes that could be exploited to improve both traits at the same time. The QTLs identified for silk and kernel resistance shared some common regions on chromosomes 1, 2, and 8 and also had some regions specific to each tissue on chromosomes 9 and 10. Thus, effective GER resistance breeding could be achieved by considering screening methods that allow exploitation of tissue-specific disease resistance mechanisms and include kernel drydown rate either in an index or as indirect selection criterion.

Biogas Technology Application in Western Kenya-A Field Investigation in Nandi and Bomet Counties

NASA Astrophysics Data System (ADS)

Venort, Taisha

The integration of biogas technology into Kenyan farming systems is becoming more common since the launch of the Kenya National Biogas Programme (KENDBIP). A comprehensive assessment of the status, operation of biogas plants constructed through KENDBIP, and their role within rural farming systems, is undertaken in two important dairy herds of Kenya (i.e., Nandi and Bomet counties), towards understanding factors affecting applications, for energy and agronomic use. Data on farming systems, operation and application were collected from 242 farm households in both counties. A Binary Linear Regression model was developed to pinpoint constraint factors most influential to plants operation. Descriptive statistics were used to compare users' experiences, and capture farm households' trends in energy and fertilizer use. Higher operational rate in Bomet (77%) than Nandi (59%), reveal that plants' viability are impacted by subsidies 'liability schemes of local supporting programs. Records of partial substitution to biogas and bio-slurry seem to contribute to the reinforcement of local agro-forestry traditions through an increase in the adoption of zero-grazing practices, wood/tree lots retention, and more efficient agricultural land attribution in the smallholder context. These changes are all having a positive impact on farm households' livelihoods and food security. Key recommendations to biogas programs stakeholders are that local subsidy schemes take better account of liability towards local technicians, Quality Control responsibilities are decentralized to local enterprises, and Research & Development strategies further investigate biogas technology application in agriculture, and its role in directly impacted value chains (i.e., Dairy, African Leafy vegetables, Feed & Fodder), for better experiences by farmers.

Agronomic effects of mutations in two soybean Stearoyl-ACP-Desaturases

USDA-ARS?s Scientific Manuscript database

Soybean [Glycine max (L.) Merr.] oil normally contains 2-4% stearic acid. Oil with higher levels of stearic acid is desired for use in the baking industry, for both its chemical properties and human health benefits. Several lines with increased stearic acid have been identified; however, the agronom...

Understanding Arsenic Dynamics in Agronomic Systems to Predict and Prevent Uptake by Crop Plants

EPA Science Inventory

This review is on arsenic in agronomic systems, and covers processes that influence the entry of arsenic into the human food supply. The scope is from sources of arsenic (natural and anthropogenic) in soils, biogeochemical and rhizosphere processes that control arsenic speciatio...

Disease evaluations and agronomic traits of advanced peanut breeding lines in 2017

USDA-ARS?s Scientific Manuscript database

Disease evaluations of advanced peanut breeding lines are conducted annually to compare the agronomic traits (crop value, yield, seed grade and characteristics) and disease resistance in cultivars that are currently available or close to being released for the Southwest. In 2017, a total of 19 comm...

Has selection for improved agronomic traits made reed canarygrass invasive?

USDA-ARS?s Scientific Manuscript database

Breeding efforts will play a critical role in meeting the increasing demand for cellulosic bioenergy feedstocks. However, a major concern is the potential development of novel invasive species that result from breeder’s efforts to improve agronomic traits in a crop. We use reed canarygrass as a case...

Cultivar x binary mixture interaction effect on agronomic traits in orchardgrass

USDA-ARS?s Scientific Manuscript database

A study was conducted to evaluate and characterize the agronomic value, including dry matter yield and forage quality of 25 orchardgrass cultivars grown in monoculture and binary mixtures with alfalfa under supplemental irrigation from 2009 to 2012 at a Millville, UT, field site. Orchardgrass monoc...

EVALUATING THE ROLE OF HABITAT QUALITY ON ESTABLISHMENT OF GM AGROSTIS STOLONIFERA PLANTS IN NON-AGRONOMIC SETTINGS

EPA Science Inventory

We compared soil chemistry and plant community data at non-agronomic mesic locations that either did or did not contain genetically modified (GM) Agrostis stolonifera. The best two-variable logistic regression model included soil Mn content and A. stolonifera cover and explained...

Introgression lines of Triticum aestivum x Aegilops tauschii: Agronomic and nutritional value

USDA-ARS?s Scientific Manuscript database

Eighty-five single homozygous substitution lines (SLs) of the Aegilops tauschii D genome in Chinese Spring (CS) hexaploid wheat (Triticum aestivum L.) genetic background were evaluated for agronomic, phenotypic and ionome profiles during three years of field experiments. An augmented design with a r...

Responses of Super Rice (Oryza sativa L.) to Different Planting Methods for Grain Yield and Nitrogen-Use Efficiency in the Single Cropping Season

PubMed Central

Chen, Song; Wang, Danying; Xu, Chunmei; Ji, Chenglin; Zhang, Xiaoguo; Zhao, Xia; Zhang, Xiufu; Chauhan, Bhagirath Singh

2014-01-01

To break the yield ceiling of rice production, a super rice project was developed in 1996 to breed rice varieties with super high yield. A two-year experiment was conducted to evaluate yield and nitrogen (N)-use response of super rice to different planting methods in the single cropping season. A total of 17 rice varieties, including 13 super rice and four non-super checks (CK), were grown under three N levels [0 (N0), 150 (N150), and 225 (N225) kg ha−1] and two planting methods [transplanting (TP) and direct-seeding in wet conditions (WDS)]. Grain yield under WDS (7.69 t ha−1) was generally lower than TP (8.58 t ha−1). However, grain yield under different planting methods was affected by N rates as well as variety groups. In both years, there was no difference in grain yield between super and CK varieties at N150, irrespective of planting methods. However, grain yield difference was dramatic in japonica groups at N225, that is, there was an 11.3% and 14.1% average increase in super rice than in CK varieties in WDS and TP, respectively. This suggests that high N input contributes to narrowing the yield gap in super rice varieties, which also indicates that super rice was bred for high fertility conditions. In the japonica group, more N was accumulated in super rice than in CK at N225, but no difference was found between super and CK varieties at N0 and N150. Similar results were also found for N agronomic efficiency. The results suggest that super rice varieties have an advantage for N-use efficiency when high N is applied. The response of super rice was greater under TP than under WDS. The results suggest that the need to further improve agronomic and other management practices to achieve high yield and N-use efficiency for super rice varieties in WDS. PMID:25111805

Responses of super rice (Oryza sativa L.) to different planting methods for grain yield and nitrogen-use efficiency in the single cropping season.

PubMed

Chen, Song; Wang, Danying; Xu, Chunmei; Ji, Chenglin; Zhang, Xiaoguo; Zhao, Xia; Zhang, Xiufu; Chauhan, Bhagirath Singh

2014-01-01

To break the yield ceiling of rice production, a super rice project was developed in 1996 to breed rice varieties with super high yield. A two-year experiment was conducted to evaluate yield and nitrogen (N)-use response of super rice to different planting methods in the single cropping season. A total of 17 rice varieties, including 13 super rice and four non-super checks (CK), were grown under three N levels [0 (N0), 150 (N150), and 225 (N225) kg ha-1] and two planting methods [transplanting (TP) and direct-seeding in wet conditions (WDS)]. Grain yield under WDS (7.69 t ha-1) was generally lower than TP (8.58 t ha-1). However, grain yield under different planting methods was affected by N rates as well as variety groups. In both years, there was no difference in grain yield between super and CK varieties at N150, irrespective of planting methods. However, grain yield difference was dramatic in japonica groups at N225, that is, there was an 11.3% and 14.1% average increase in super rice than in CK varieties in WDS and TP, respectively. This suggests that high N input contributes to narrowing the yield gap in super rice varieties, which also indicates that super rice was bred for high fertility conditions. In the japonica group, more N was accumulated in super rice than in CK at N225, but no difference was found between super and CK varieties at N0 and N150. Similar results were also found for N agronomic efficiency. The results suggest that super rice varieties have an advantage for N-use efficiency when high N is applied. The response of super rice was greater under TP than under WDS. The results suggest that the need to further improve agronomic and other management practices to achieve high yield and N-use efficiency for super rice varieties in WDS.

[Effects of grafting and nitrogen fertilization on melon yield and nitrogen uptake and utilization].

PubMed

Xue, Liang; Ma, Zhong Ming; DU, Shao Ping

2017-06-18

A split-field design experiment was carried out using two main methods of cultivation (grafting and self-rooted cultivation) and subplots with different nitrogen application levels (0, 120, 240, and 360 kg N·hm -2 ) to investigate the effects of cultivation method and nitrogen application levels on the yield and quality of melons, nitrogen transfer, nitrogen distribution, and nitrogen utilization rate. The results showed that melons produced by grafting cultivation had a 7.3% increase in yield and a 0.16%-3.28% decrease in soluble solid content, compared to those produced by self-rooted cultivation. The amount of nitrogen accumulated in melons grafted in the early growth phase was lower than that in self-rooted melons, and higher after fruiting. During harvest, nitrogen accumulation amount in grafted melon plants was 5.2% higher than that in self-rooted plants and nitrogen accumulation amount in fruits was 10.3% higher. Grafting cultivation increased the amount of nitrogen transfer from plants to fruits by 20.9% compared to self-rooted cultivation. Nitrogen distribution in fruits was >80% in grafted melons, whereas that in self-rooted melons was <80%. Under the same level of nitrogen fertilization, melons cultivated by grafting showed 1.3%-4.2% increase in nitrogen absorption and utilization rate, 2.73-5.56 kg·kg -1 increase in nitrogen agronomic efficiency, and 7.39-16.18 kg·kg -1 increase in nitrogen physiological efficiency, compared to self-rooted cultivation. On the basis of the combined perspective of commercial melon yield, and nitrogen absorption and utilization rate, an applied nitrogen amount of 240 kg·hm -2 is most suitable for graf-ting cultivation in this region.

Drivers of Phosphorus Uptake by Barley Following Secondary Resource Application

PubMed Central

Brod, Eva; Øgaard, Anne Falk; Krogstad, Tore; Haraldsen, Trond Knapp; Frossard, Emmanuel; Oberson, Astrid

2016-01-01

Minable rock phosphate is a finite resource. Replacing mineral phosphorus (P) fertilizer with P-rich secondary resources is one way to manage P more efficiently, but the importance of physicochemical and microbial soil processes induced by secondary resources for plant P uptake is still poorly understood. Using radioactive-labeling techniques, the fertilization effects of dairy manure, fish sludge, meat bone meal, and wood ash were studied as P uptake by barley after 44 days and compared with those of water-soluble mineral P (MinP) and an unfertilized control (NoP) in a pot experiment with an agricultural soil containing little available P at two soil pH levels, approximately pH 5.3 (unlimed soil) and pH 6.2 (limed soil). In a parallel incubation experiment, the effects of the secondary resources on physicochemical and microbial soil processes were studied. The results showed that the relative agronomic efficiency compared with MinP decreased in the order: manure ≥fish sludge ≥wood ash ≥meat bone meal. The solubility of inorganic P in secondary resources was the main driver for P uptake by barley (Hordeum vulgare). The effects of secondary resources on physicochemical and microbial soil processes were of little overall importance. Application of organic carbon with manure resulted in microbial P immobilization and decreased uptake by barley of P derived from the soil. On both soils, P uptake by barley was best explained by a positive linear relationship with the H2O + NaHCO3-soluble inorganic P fraction in fertilizers or by a linear negative relationship with the HCl-soluble inorganic P fraction in fertilizers. PMID:27243015

Biostimulants from food processing by-products: agronomic, quality and metabolic impacts on organic tomato (Solanum lycopersicum L.).

PubMed

Abou Chehade, Lara; Al Chami, Ziad; De Pascali, Sandra Angelica; Cavoski, Ivana; Fanizzi, Francesco Paolo

2018-03-01

Biostimulants have recently gained increased attention due to their multiple benefits for sustainable agriculture. In this study, three food processing by-products - fennel processing residues (FPR), lemon processing residues (LPR) and brewer's spent grain (BSG) - were investigated as potential sources of biostimulants. Their aqueous extracts as individual and associated applications were assessed for their effects on agronomic, quality and metabolic performance of organic tomato in comparison to extract of humic substances (HS) and untreated control (CTRL). Only FPR extracts stimulated shoot growth and tomato dry matter content, whereas all candidates improved tomato yield. FPR and BSG increased fruit mineral content and BSG-FPR-LPR in combination enhanced titratable acidity. FPR-treated fruits had also 20% more vitamin C than CTRL, and higher phenol content was obtained in those of BSG-LPR. Fruit metabolomic profile showed the tendency of all extracts, except BSG-LPR, to increase tomato citric acid and to decrease β-glucose and methanol concentrations. The analysis revealed accordingly the indispensable role of FPR in combined applications for inducing an HS-like response in fruits. The results were indicative of the biostimulant activity of these extracts and demonstrated them, particularly FPR, as promising candidates for enhancing plant productivity and fruit quality. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Use of Maize (Zea mays L.) for phytomanagement of Cd-contaminated soils: a critical review.

PubMed

Rizwan, Muhammad; Ali, Shafaqat; Qayyum, Muhammad Farooq; Ok, Yong Sik; Zia-Ur-Rehman, Muhammad; Abbas, Zaheer; Hannan, Fakhir

2017-04-01

Maize (Zea mays L.) has been widely adopted for phytomanagement of cadmium (Cd)-contaminated soils due to its high biomass production and Cd accumulation capacity. This paper reviewed the toxic effects of Cd and its management by maize plants. Maize could tolerate a certain level of Cd in soil while higher Cd stress can decrease seed germination, mineral nutrition, photosynthesis and growth/yields. Toxicity response of maize to Cd varies with cultivar/varieties, growth medium and stress duration/extent. Exogenous application of organic and inorganic amendments has been used for enhancing Cd tolerance of maize. The selection of Cd-tolerant maize cultivar, crop rotation, soil type, and exogenous application of microbes is a representative agronomic practice to enhance Cd tolerance in maize. Proper selection of cultivar and agronomic practices combined with amendments might be successful for the remediation of Cd-contaminated soils with maize. However, there might be the risk of food chain contamination by maize grains obtained from the Cd-contaminated soils. Thus, maize cultivation could be an option for the management of low- and medium-grade Cd-contaminated soils if grain yield is required. On the other hand, maize can be grown on Cd-polluted soils only if biomass is required for energy production purposes. Long-term field trials are required, including risks and benefit analysis for various management strategies aiming Cd phytomanagement with maize.

Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation

PubMed Central

Pazhamala, Lekha T.; Purohit, Shilp; Saxena, Rachit K.; Garg, Vanika; Krishnamurthy, L.; Verdier, Jerome

2017-01-01

Abstract Pigeonpea (Cajanus cajan) is an important grain legume of the semi-arid tropics, mainly used for its protein rich seeds. To link the genome sequence information with agronomic traits resulting from specific developmental processes, a Cajanus cajan gene expression atlas (CcGEA) was developed using the Asha genotype. Thirty tissues/organs representing developmental stages from germination to senescence were used to generate 590.84 million paired-end RNA-Seq data. The CcGEA revealed a compendium of 28 793 genes with differential, specific, spatio-temporal and constitutive expression during various stages of development in different tissues. As an example to demonstrate the application of the CcGEA, a network of 28 flower-related genes analysed for cis-regulatory elements and splicing variants has been identified. In addition, expression analysis of these candidate genes in male sterile and male fertile genotypes suggested their critical role in normal pollen development leading to seed formation. Gene network analysis also identified two regulatory genes, a pollen-specific SF3 and a sucrose–proton symporter, that could have implications for improvement of agronomic traits such as seed production and yield. In conclusion, the CcGEA provides a valuable resource for pigeonpea to identify candidate genes involved in specific developmental processes and to understand the well-orchestrated growth and developmental process in this resilient crop. PMID:28338822

Association of green stem disorder with agronomic traits in soybean

USDA-ARS?s Scientific Manuscript database

Green stem disorder (GSD) of soybean is the occurrence of non-senescent, fleshy green stems of plants with normal, fully mature pods and seeds. The main focus of this study was to determine the relationship between GSD incidence and agronomic traits and to determine if GSD incidence was associated w...

Agronomic performance of five banana cultivars under protected cultivation

USDA-ARS?s Scientific Manuscript database

Banana has been grown both in open-field and protected cultivation in Turkey. So far protected cultivation is very popular due to the high yield and quality. The objective of the study was to evaluate agronomic performance of five new banana cultivars under plastic greenhouse. ‘MA 13’, ‘Williams’, ‘...

Digester effluent’s agronomic and odor emission potential: A swine case study

USDA-ARS?s Scientific Manuscript database

This on-farm study looked at the full-scale treatment effects of anaerobic digestion on the composition of manure effluent from an agronomic and air quality perspective. The goal was to improve our understanding of the role that anaerobic digestion may play in managing manure as a fertilizer and in...

Declining spatial efficiency of global cropland nitrogen allocation

NASA Astrophysics Data System (ADS)

Mueller, Nathaniel D.; Lassaletta, Luis; Runck, Bryan C.; Billen, Gilles; Garnier, Josette; Gerber, James S.

2017-02-01

Efficiently allocating nitrogen (N) across space maximizes crop productivity for a given amount of N input and reduces N losses to the environment. Here we quantify changes in the global spatial efficiency of cropland N use by calculating historical trade-off frontiers relating N inputs to possible N yield assuming efficient allocation. Time series cropland N budgets from 1961 to 2009 characterize the evolution of N input-yield response functions across 12 regions and are the basis for constructing trade-off frontiers. Improvements in agronomic technology have substantially increased cropping system yield potentials and expanded N-driven crop production possibilities. However, we find that these gains are compromised by the declining spatial efficiency of N use across regions. Since the start of the Green Revolution, N inputs and yields have moved farther from the optimal frontier over time; in recent years (1994-2009), global N surplus has grown to a value that is 69% greater than what is possible with efficient N allocation between regions. To reflect regional pollution and agricultural development goals, we construct scenarios that restrict reallocation, finding that these changes only slightly decrease potential gains in nitrogen use efficiency. Our results are inherently conservative due to the regional unit of analysis, meaning a larger potential exists than is quantified here for cross-scale policies to promote spatially efficient N use.

Plastic mulching in agriculture. Trading short-term agronomic benefits for long-term soil degradation?

PubMed

Steinmetz, Zacharias; Wollmann, Claudia; Schaefer, Miriam; Buchmann, Christian; David, Jan; Tröger, Josephine; Muñoz, Katherine; Frör, Oliver; Schaumann, Gabriele Ellen

2016-04-15

Plastic mulching has become a globally applied agricultural practice for its instant economic benefits such as higher yields, earlier harvests, improved fruit quality and increased water-use efficiency. However, knowledge of the sustainability of plastic mulching remains vague in terms of both an environmental and agronomic perspective. This review critically discusses the current understanding of the environmental impact of plastic mulch use by linking knowledge of agricultural benefits and research on the life cycle of plastic mulches with direct and indirect implications for long-term soil quality and ecosystem services. Adverse effects may arise from plastic additives, enhanced pesticide runoff and plastic residues likely to fragment into microplastics but remaining chemically intact and accumulating in soil where they can successively sorb agrochemicals. The quantification of microplastics in soil remains challenging due to the lack of appropriate analytical techniques. The cost and effort of recovering and recycling used mulching films may offset the aforementioned benefits in the long term. However, comparative and long-term agronomic assessments have not yet been conducted. Furthermore, plastic mulches have the potential to alter soil quality by shifting the edaphic biocoenosis (e.g. towards mycotoxigenic fungi), accelerate C/N metabolism eventually depleting soil organic matter stocks, increase soil water repellency and favour the release of greenhouse gases. A substantial process understanding of the interactions between the soil microclimate, water supply and biological activity under plastic mulches is still lacking but required to estimate potential risks for long-term soil quality. Currently, farmers mostly base their decision to apply plastic mulches rather on expected short-term benefits than on the consideration of long-term consequences. Future interdisciplinary research should therefore gain a deeper understanding of the incentives for farmers and public perception from both a psychological and economic perspective in order to develop new support strategies for the transition into a more environment-friendly food production. Copyright © 2016 Elsevier B.V. All rights reserved.

Adaptive nitrogen and integrated weed management in conservation agriculture: impacts on agronomic productivity, greenhouse gas emissions, and herbicide residues.

PubMed

Oyeogbe, Anthony Imoudu; Das, T K; Bhatia, Arti; Singh, Shashi Bala

2017-04-01

Increasing nitrogen (N) immobilization and weed interference in the early phase of implementation of conservation agriculture (CA) affects crop yields. Yet, higher fertilizer and herbicide use to improve productivity influences greenhouse gase emissions and herbicide residues. These tradeoffs precipitated a need for adaptive N and integrated weed management in CA-based maize (Zea mays L.)-wheat [Triticum aestivum (L.) emend Fiori & Paol] cropping system in the Indo-Gangetic Plains (IGP) to optimize N availability and reduce weed proliferation. Adaptive N fertilization was based on soil test value and normalized difference vegetation index measurement (NDVM) by GreenSeeker™ technology, while integrated weed management included brown manuring (Sesbania aculeata L. co-culture, killed at 25 days after sowing), herbicide mixture, and weedy check (control, i.e., without weed management). Results indicated that the 'best-adaptive N rate' (i.e., 50% basal + 25% broadcast at 25 days after sowing + supplementary N guided by NDVM) increased maize and wheat grain yields by 20 and 14% (averaged for 2 years), respectively, compared with whole recommended N applied at sowing. Weed management by brown manuring (during maize) and herbicide mixture (during wheat) resulted in 10 and 21% higher grain yields (averaged for 2 years), respectively, over the weedy check. The NDVM in-season N fertilization and brown manuring affected N 2 O and CO 2 emissions, but resulted in improved carbon storage efficiency, while herbicide residuals in soil were significantly lower in the maize season than in wheat cropping. This study concludes that adaptive N and integrated weed management enhance synergy between agronomic productivity, fertilizer and herbicide efficiency, and greenhouse gas mitigation.

Demand driven decision support for efficient water resources allocation in irrigated agriculture

NASA Astrophysics Data System (ADS)

Schuetze, Niels; Grießbach, Ulrike Ulrike; Röhm, Patric; Stange, Peter; Wagner, Michael; Seidel, Sabine; Werisch, Stefan; Barfus, Klemens

2014-05-01

Due to climate change, extreme weather conditions, such as longer dry spells in the summer months, may have an increasing impact on the agriculture in Saxony (Eastern Germany). For this reason, and, additionally, declining amounts of rainfall during the growing season the use of irrigation will be more important in future in Eastern Germany. To cope with this higher demand of water, a new decision support framework is developed which focuses on an integrated management of both irrigation water supply and demand. For modeling the regional water demand, local (and site-specific) water demand functions are used which are derived from the optimized agronomic response at farms scale. To account for climate variability the agronomic response is represented by stochastic crop water production functions (SCWPF) which provide the estimated yield subject to the minimum amount of irrigation water. These functions take into account the different soil types, crops and stochastically generated climate scenarios. By applying mathematical interpolation and optimization techniques, the SCWPF's are used to compute the water demand considering different constraints, for instance variable and fix costs or the producer price. This generic approach enables the computation for both multiple crops at farm scale as well as of the aggregated response to water pricing at a regional scale for full and deficit irrigation systems. Within the SAPHIR (SAxonian Platform for High Performance Irrigation) project a prototype of a decision support system is developed which helps to evaluate combined water supply and demand management policies for an effective and efficient utilization of water in order to meet future demands. The prototype is implemented as a web-based decision support system and it is based on a service-oriented geo-database architecture.

New Amphiphilic Composite for Preparing Efficient Coated Potassium-Fertilizers for Top-Dressing Fertilization of Annual Crops.

PubMed

Urrutia, Oscar; Erro, Javier; Zabini, Andre; Hoshiba, Kent; Blandin, Anne F; Baigorri, Roberto; Martín-Pastor, Manuel; Alis, Yves; Yvin, Jean C; García-Mina, José M

2018-05-16

This study describes the efficiency of a new coating material for preparing granulated potassium-fertilizers with a potassium release to the soil solution sensitive to rainfall intensity. The composite is prepared by reaction of an alkyd-resin with cement in the absence of water. The complementary use of diverse analytical techniques showed that the presence of the cement fraction induced alkyd resin reticulation and gradual cement-resin hardening. Scanning electron microscopy revealed the formation of micro and nanopores within cement-clusters, whose water permeability is affected by the resin reticulation and amphiphilic character. Potassium release was evaluated in water, soil-columns, and in soil-plant trials in pots and open-field. Agronomic results were consistent with potassium release rates obtained in water solution and soil columns. The composite-coated potassium fertilizer was more efficient than the noncoated one in providing plant available potassium, with this effect being dependent on water presence in soil.

The role of competition and seed production environment on the success of two perennial grass species in a roadside restoration

USDA-ARS?s Scientific Manuscript database

When large-scale restorations are undertaken using local genotypes, wild-collected sources often undergo a generation in an agronomic environment for seed increase. We have little information on how a single generation of agronomic production can alter seed success in restoration. In this study, we...

Variation of agronomic traits of ravenna grass and its potential as a biomass crop

USDA-ARS?s Scientific Manuscript database

Ravenna grass (Tripidium ravennae) is a tall robust bunchgrass with potential as an energy crop. The aim was to investigate the variation of agronomic traits of Ravenna grass. Univariate analyses of traits were conducted on 95 plants from 2013 to 2017. The traits were: biomass yield per plant, C, N,...

Descriptive statistics and correlation analysis of agronomic traits in a maize recombinant inbred line population.

PubMed

Zhang, H M; Hui, G Q; Luo, Q; Sun, Y; Liu, X H

2014-01-21

Maize (Zea mays L.) is one of the most important crops in the world. In this study, 13 agronomic traits of a recombinant inbred line population that was derived from the cross between Mo17 and Huangzao4 were investigated in maize: ear diameter, ear length, ear axis diameter, ear weight, plant height, ear height, days to pollen shed (DPS), days to silking (DS), the interval between DPS and DS, 100-kernel weight, kernel test weight, ear kernel weight, and kernel rate. Furthermore, the descriptive statistics and correlation analysis of the 13 traits were performed using the SPSS 11.5 software. The results providing the phenotypic data here are needed for the quantitative trait locus mapping of these agronomic traits.

Evaluation of a simple method for crop evapotranspiration partitioning and comparison of different water use efficiency approaches

NASA Astrophysics Data System (ADS)

Tallec, T.; Rivalland, V.; Jarosz, N.; Boulet, G.; Gentine, P.; Ceschia, E.

2012-04-01

In the current context of climate change, intra- and inter-annual variability of precipitation can lead to major modifications of water budgets and water use efficiencies (WUE). Obtaining greater insight into how climatic variability and agricultural practices affect water budgets and their components in croplands is, thus, important for adapting crop management and limiting water losses. The principal aims of this study were 1) to assess the contribution of different components to the agro-ecosystem water budget and 2) to analyze and compare the WUE calculated from ecophysiological (WUEplt), environmental (WUEeco) and agronomical (WUEagro) points of view for various crops during the growing season and for the annual time scale. Eddy covariance (EC) measurements of CO2 and water flux were performed on winter wheat, maize and sunflower crops at two sites in southwest France: Auradé and Lamasquère. To infer WUEplt, an estimation of plant transpiration (TR) is needed. We then tested a new method for partitioning evapotranspiration (ETR), measured by means of the EC method, into soil evaporation (E) and plant transpiration (TR) based on marginal distribution sampling (MDS). We compared these estimations with calibrated simulations of the ICARE-SVAT double source mechanistic model. The two partitioning methods showed good agreement, demonstrating that MDS is a convenient, simple and robust tool for estimating E with reasonable associated uncertainties. During the growing season, the proportion of E in ETR was approximately one-third and varied mainly with crop leaf area. When calculated on an annual time scale, the proportion of E in ETR reached more than 50%, depending on crop leaf area and the duration and distribution of bare soil within the year. WUEplt values ranged between -4.1 and -5.6 g C kg-1 H2O for maize and winter wheat, respectively, and were strongly dependent on meteorological conditions at the half-hourly, daily and seasonal time scales. When normalized by the vapor pressure deficit to reduce the effect of seasonal climatic variability on WUEplt, maize had the highest efficiency. Absolute WUEeco values on the ecosystem level, including water loss through evaporation and carbon release through ecosystem respiration, were consequently lower than on the stand level. This observation was even more pronounced on an annual time scale than on the growing-season time scale because of bare soil periods. Winter wheat showed the highest absolute values of WUEeco, and sunflower showed the lowest. To account for carbon input into WUE through organic fertilization and output through biomass exportation during harvest, net biome production (NBP) was considered in the calculation of an ecosystem-level WUE (WUENBP). Considering WUENBP instead of WUEeco markedly decreased the efficiency of the ecosystem, especially for crops with important carbon exports, as observed for the maize used for silaging and pointed out the profits of organic C input. From an agronomic perspective, maize showed the best WUE, with exported (marketable) carbon per unit of water used exceeding that of other crops. Thus, the environmental and agronomical WUE approaches should be considered together in the context of global climate change and sustainable development.

Preparation of wheat straw based superabsorbent resins and their applications as adsorbents for ammonium and phosphate removal.

PubMed

Liu, Jia; Su, Yuan; Li, Qian; Yue, Qinyan; Gao, Baoyu

2013-09-01

A novel wheat straw cellulose-g-poly (potassium acrylate)/polyvinyl alcohol (WSC-g-PKA/PVA) semi-interpenetrating polymer networks (semi-IPNs) superabsorbent resin (SAR) was prepared by graft copolymerization. The structure and performance of the WSC-g-PKA/PVA semi-IPNs SAR was studied and compared with those of wheat straw cellulose-g-poly (potassium acrylate) (WSC-g-PKA) SAR. The effects of various experimental parameters such as solution pH, concentration, contact time and ion strength on NH4(+) and PO4(3-) removal from solutions were investigated. Equilibrium isotherm data of adsorption of both NH4(+) and PO4(3-) were well fitted to the Freundlich model. Kinetic analysis showed that the pseudo-second-order kinetic model was more suitable for describing the whole adsorption process of NH4(+) and PO4(3-) on SARs. Overall, WSC-g-PKA/PVA semi-IPNs SAR showed better properties in comparison with WSC-g-PKA SAR and it could be considered as one efficient material for the removal and recovery of nitrogen and phosphorus with the agronomic reuse as a fertilizer. Copyright © 2013 Elsevier Ltd. All rights reserved.

Sugars in peach fruit: a breeding perspective

PubMed Central

Cirilli, Marco; Bassi, Daniele; Ciacciulli, Angelo

2016-01-01

The last decade has been characterized by a decrease in peach (Prunus persica) fruit consumption in many countries, foremost due to unsatisfactory quality. The sugar content is one of the most important quality traits perceived by consumers, and the development of novel peach cultivars with sugar-enhanced content is a primary objective of breeding programs to revert the market inertia. Nevertheless, the progress reachable through classical phenotypic selection is limited by the narrow genetic bases of peach breeding material and by the complex quantitative nature of the trait, which is deeply affected by environmental conditions and agronomical management. The development of molecular markers applicable in MAS or MAB has become an essential strategy to boost the selection efficiency. Despite the enormous advances in ‘omics’ sciences, providing powerful tools for plant genotyping, the identification of the genetic bases of sugar-related traits is hindered by the lack of adequate phenotyping methods that are able to address strong within-plant variability. This review provides an overview of the current knowledge of the metabolic pathways and physiological mechanisms regulating sugar accumulation in peach fruit, the main advances in phenotyping approaches and genetic background, and finally addressing new research priorities and prospective for breeders. PMID:26816618

Designing an Accompanying Ecosystem to Foster Entrepreneurship among Agronomic and Forestry Engineering Students. Opinion and Commitment of University Lecturers

ERIC Educational Resources Information Center

Ortiz-Medina, L.; Fernández-Ahumada, E.; Lara-Vélez, P.; Taguas, E. V.; Gallardo-Cobos, R.; del Campillo, M. C.; Guerrero-Ginel, J. E.

2016-01-01

In the Higher School of Agronomic and Forestry Engineering of the University of Cordoba, a collective project conceived as an 'ecosystem to support and accompany entrepreneurs' has been proposed. The approach aims to spread and consolidate the entrepreneurial spirit and to respond to the demands of possible stakeholders involved in the whole…

[Comparative analysis of agronomic and qualitative characters in different lines of Dendrobium denneanum].

PubMed

He, Tao; Deng, Li; Lin, Yuan; Li, Bo; Yang, Xiaofan; Wang, Fang; Chun, Ze

2010-08-01

To provide theoretical basis for breeding good variety of Dendrobium denneanum, agronomic and qualitative characters of 4 different lines and relationships among them were studied. The stem length, stem diameter, leaf length, leaf width, length/ width ratio and leaf area were measured. The single fresh and dry stem was weighed and drying rate was calculated. The contents of polysaccharides and total alkaloids were determined by sulfuric acid-phenol colorimetry and acid-dye colorimetry, respectively. The correlations between characters were analyzed. The results showed that differences in major agronomic characters between four lines were significant. The plant types of dq-1 and dq-2 were higher, dq-3 was medium and dq-4 was lower. The fresh weigh of stem and content of polysaccharides were the highest in dq-2, 7.81 g and 14.33%. While the highest content of total alkaloids and was 0. 486% in dq-3. There were significant correlations between agronomic characters, but these characters had low or non correlations with qualitative characters such as polysaccharides and total alkaloids. It was shown that the content of polysaccharides and total alkaloids were significantly different among 4 lines of D. denneanum, which could be selected for different uses.

Biostimulant Action of Protein Hydrolysates: Unraveling Their Effects on Plant Physiology and Microbiome

PubMed Central

Colla, Giuseppe; Hoagland, Lori; Ruzzi, Maurizio; Cardarelli, Mariateresa; Bonini, Paolo; Canaguier, Renaud; Rouphael, Youssef

2017-01-01

Plant-derived protein hydrolysates (PHs) have gained prominence as plant biostimulants because of their potential to increase the germination, productivity and quality of a wide range of horticultural and agronomic crops. Application of PHs can also alleviate the negative effects of abiotic plant stress due to salinity, drought and heavy metals. Recent studies aimed at uncovering the mechanisms regulating these beneficial effects indicate that PHs could be directly affecting plants by stimulating carbon and nitrogen metabolism, and interfering with hormonal activity. Indirect effects could also play a role as PHs could enhance nutrient availability in plant growth substrates, and increase nutrient uptake and nutrient-use efficiency in plants. Moreover, the beneficial effects of PHs also could be due to the stimulation of plant microbiomes. Plants are colonized by an abundant and diverse assortment of microbial taxa that can help plants acquire nutrients and water and withstand biotic and abiotic stress. The substrates provided by PHs, such as amino acids, could provide an ideal food source for these plant-associated microbes. Indeed, recent studies have provided evidence that plant microbiomes are modified by the application of PHs, supporting the hypothesis that PHs might be acting, at least in part, via changes in the composition and activity of these microbial communities. Application of PHs has great potential to meet the twin challenges of a feeding a growing population while minimizing agriculture’s impact on human health and the environment. However, to fully realize the potential of PHs, further studies are required to shed light on the mechanisms conferring the beneficial effects of these products, as well as identify product formulations and application methods that optimize benefits under a range of agro-ecological conditions. PMID:29312427

Distribution of Phenolic Compounds and Antioxidative Activities of Rice Kernel and Their Relationships with Agronomic Practice

PubMed Central

Kesarwani, Amit; Chiang, Po-Yuan; Chen, Shih-Shiung

2014-01-01

The phenolic and antioxidant activity of ethanolic extract of two Japonica rice cultivars, Taikeng no. 16 (medium and slender grain) and Kaohsiung no. 139 (short and round grain), grown under organic and conventional farming were examined. Analyses shows that Kaohsiung no. 139 contains the highest amount of secondary metabolites and continuous farming can increase its production. Results also suggest that phenolic content under different agronomic practices, has not shown significant differences but organically grown rice has proven to be better in higher accumulation of other secondary metabolites (2,2-diphenyl-1-picrylhydrazyl (DPPH), flavonoid content, and ferrous chelating capacity). In nutshell, genetic traits and environment have significant effect on phenolic compounds and the least variation reported under agronomic practices. PMID:25506072

Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation.

PubMed

Pazhamala, Lekha T; Purohit, Shilp; Saxena, Rachit K; Garg, Vanika; Krishnamurthy, L; Verdier, Jerome; Varshney, Rajeev K

2017-04-01

Pigeonpea (Cajanus cajan) is an important grain legume of the semi-arid tropics, mainly used for its protein rich seeds. To link the genome sequence information with agronomic traits resulting from specific developmental processes, a Cajanus cajan gene expression atlas (CcGEA) was developed using the Asha genotype. Thirty tissues/organs representing developmental stages from germination to senescence were used to generate 590.84 million paired-end RNA-Seq data. The CcGEA revealed a compendium of 28 793 genes with differential, specific, spatio-temporal and constitutive expression during various stages of development in different tissues. As an example to demonstrate the application of the CcGEA, a network of 28 flower-related genes analysed for cis-regulatory elements and splicing variants has been identified. In addition, expression analysis of these candidate genes in male sterile and male fertile genotypes suggested their critical role in normal pollen development leading to seed formation. Gene network analysis also identified two regulatory genes, a pollen-specific SF3 and a sucrose-proton symporter, that could have implications for improvement of agronomic traits such as seed production and yield. In conclusion, the CcGEA provides a valuable resource for pigeonpea to identify candidate genes involved in specific developmental processes and to understand the well-orchestrated growth and developmental process in this resilient crop. © The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Effects of organic carbon sequestration strategies on soil enzymatic activities

NASA Astrophysics Data System (ADS)

Puglisi, E.; Suciu, N.; Botteri, L.; Ferrari, T.; Coppolecchia, D.; Trevisan, M.; Piccolo, A.

2009-04-01

Greenhouse gases emissions can be counterbalanced with proper agronomical strategies aimed at sequestering carbon in soils. These strategies must be tested not only for their ability in reducing carbon dioxide emissions, but also for their impact on soil quality: enzymatic activities are related to main soil ecological quality, and can be used as early and sensitive indicators of alteration events. Three different strategies for soil carbon sequestration were studied: minimum tillage, protection of biodegradable organic fraction by compost amendment and oxidative polimerization of soil organic matter catalyzed by biometic porfirins. All strategies were compared with a traditional agricultural management based on tillage and mineral fertilization. Experiments were carried out in three Italian soils from different pedo-climatic regions located respectively in Piacenza, Turin and Naples and cultivated with maize or wheat. Soil samples were taken for three consecutive years after harvest and analyzed for their content in phosphates, ß-glucosidase, urease and invertase. An alteration index based on these enzymatic activities levels was applied as well. The biomimetic porfirin application didn't cause changes in enzymatic activities compared to the control at any treatment or location. Enzymatic activities were generally higher in the minimum tillage and compost treatment, while differences between location and date of samplings were limited. Application of the soil alteration index based on enzymatic activities showed that soils treated with compost or subjected to minimum tillage generally have a higher biological quality. The work confirms the environmental sustainability of the carbon sequestering agronomical practices studied.

Windrow co-composting of natural casings waste with sheep manure and dead leaves

DOE Office of Scientific and Technical Information (OSTI.GOV)

Makan, Abdelhadi, E-mail: abdelhadi.makan@gmail.com

Highlights: • Waste management opportunities in small and medium companies were highlighted. • Pilot scale program for windrow co-composting of natural casings was investigated. • Compost preparation, characterization and application phases were discussed. • Natural casings co-composting has proved more viable and cost effective solution. - Abstract: After studying the waste management opportunities in small and medium companies of natural casings, composting has proved more viable and cost effective solution for the valorization of these types of waste, but its feasibility depends on the final product value. This paper investigated a pilot scale program for the windrow co-composting of naturalmore » casings waste with sheep manure and dead leaves incorporation. Processing, characterization and application of the final compost were described and the final compost was analyzed for pathogens, metals, nutrients, maturity, and agronomic parameters. The results showed that all test result levels were below the limits specified in the EPA regulations published in Title 40, Section 503, of the Code of Federal Regulations (40 CFR 503). Moreover, the agronomic value tests which include nutrients, organic matter, pH, electrical conductivity, etc. showed that the compost had high organic-matter content and low salt content, all of which indicate good compost characteristics. The ratio of nitrogen (N), phosphorus (P), and potassium (K), or NPK ratio, was measured at 1.6–0.9–0.7. Reported units are consistent with those found on fertilizer formulations.« less

Agronomic effectiveness of biofertilizers with phosphate rock, sulphur and Acidithiobacillus for yam bean grown on a Brazilian tableland acidic soil.

PubMed

Stamford, N P; Santos, P R; Santos, C E S; Freitas, A D S; Dias, S H L; Lira, M A

2007-04-01

Phosphate rocks have low available P and soluble P fertilizers have been preferably used in plant crop production, although economic and effective P sources are needed. Experiments were carried out on a Brazilian Typic Fragiudult soil with low available P to evaluate the agronomic effectiveness of phosphate rock (PR) compared with soluble phosphate fertilizer. Yam bean (Pachyrhizus erosus) inoculated with rhizobia (strains NFB 747 and NFB 748) or not inoculated was the test crop. Biofertilizers were produced in field furrows by mixing phosphate rock (PR) and sulphur inoculated with Acidithiobacillus (S+Ac) in different rates (50, 100, 150 and 200 g S kg(-1) PR), with 60 days of incubation. Treatments were carried out with PR; biofertilizers B(50), B(100), B(150), B(200); triple super phosphate (TSP); B(200) without Acidithiobacillus and a control treatment without P application (P(0)). TSP and biofertilizers plus S inoculated with Acidithiobacillus increased plant growth. Soil acidity and available P increased when biofertilizers B(150) and B(200) were applied. We conclude that biofertilizers may be used as P source; however, long term use will reduce soil pH and potentially reduce crop growth.

Science, technique, technology: passages between matter and knowledge in imperial Chinese agriculture.

PubMed

Bray, Francesca

2008-09-01

Many historians today prefer to speak of knowledge and practice rather than science and technology. Here I argue for the value of reinstating the terms science, techniques and technology as tools for a more precise analysis of governmentality and the workings of power. My tactic is to use these three categories and their articulations to highlight flows between matter and ideas in the production and reproduction of knowledge. In any society, agriculture offers a wonderfully rich case of how ideas, material goods and social relations interweave. In China agronomy was a science of state, the basis of legitimate rule. I compare different genres of agronomic treatise to highlight what officials, landowners and peasants respectively contributed to, and expected from, this charged natural knowledge. I ask how new forms of textual and graphic inscription for encoding agronomic knowledge facilitated its dissemination and ask how successful this knowledge proved when rematerialized and tested as concrete artefacts or techniques. I highlight forms of innovation in response to crisis, and outline the overlapping interpretative frameworks within which the material applications of Chinese agricultural science confirmed and extended its truth across space and time.

Windrow co-composting of natural casings waste with sheep manure and dead leaves.

PubMed

Makan, Abdelhadi

2015-08-01

After studying the waste management opportunities in small and medium companies of natural casings, composting has proved more viable and cost effective solution for the valorization of these types of waste, but its feasibility depends on the final product value. This paper investigated a pilot scale program for the windrow co-composting of natural casings waste with sheep manure and dead leaves incorporation. Processing, characterization and application of the final compost were described and the final compost was analyzed for pathogens, metals, nutrients, maturity, and agronomic parameters. The results showed that all test result levels were below the limits specified in the EPA regulations published in Title 40, Section 503, of the Code of Federal Regulations (40 CFR 503). Moreover, the agronomic value tests which include nutrients, organic matter, pH, electrical conductivity, etc. showed that the compost had high organic-matter content and low salt content, all of which indicate good compost characteristics. The ratio of nitrogen (N), phosphorus (P), and potassium (K), or NPK ratio, was measured at 1.6-0.9-0.7. Reported units are consistent with those found on fertilizer formulations. Copyright © 2015 Elsevier Ltd. All rights reserved.

Does epigenetic polymorphism contribute to phenotypic variances in Jatropha curcas L.?

PubMed

Yi, Chengxin; Zhang, Shilu; Liu, Xiaokun; Bui, Ha T N; Hong, Yan

2010-11-23

There is a growing interest in Jatropha curcas L. (jatropha) as a biodiesel feedstock plant. Variations in its morphology and seed productivity have been well documented. However, there is the lack of systematic comparative evaluation of distinct collections under same climate and agronomic practices. With the several reports on low genetic diversity in jatropha collections, there is uncertainty on genetic contribution to jatropha morphology. In this study, five populations of jatropha plants collected from China (CN), Indonesia (MD), Suriname (SU), Tanzania (AF) and India (TN) were planted in one farm under the same agronomic practices. Their agronomic traits (branching pattern, height, diameter of canopy, time to first flowering, dormancy, accumulated seed yield and oil content) were observed and tracked for two years. Significant variations were found for all the agronomic traits studied. Genetic diversity and epigenetic diversity were evaluated using florescence Amplified Fragment Length Polymorphism (fAFLP) and methylation sensitive florescence AFLP (MfAFLP) methods. Very low level of genetic diversity was detected (polymorphic band <0.1%) within and among populations. In contrast, intermediate but significant epigenetic diversity was detected (25.3% of bands were polymorphic) within and among populations. More than half of CCGG sites surveyed by MfAFLP were methylated with significant difference in inner cytosine and double cytosine methylation among populations. Principal coordinates analysis (PCoA) based on Nei's epigenetic distance showed Tanzania/India group distinct from China/Indonesia/Suriname group. Inheritance of epigenetic markers was assessed in one F1 hybrid population between two morphologically distinct parent plants and one selfed population. 30 out of 39 polymorphic markers (77%) were found heritable and followed Mendelian segregation. One epiallele was further confirmed by bisulphite sequencing of its corresponding genomic region. Our study confirmed climate and practice independent differences in agronomic performance among jatropha collections. Such agronomic trait variations, however, were matched by very low genetic diversity and medium level but significant epigenetic diversity. Significant difference in inner cytosine and double cytosine methylation at CCGG sites was also found among populations. Most epigenetic differential markers can be inherited as epialleles following Mendelian segregation. These results suggest possible involvement of epigenetics in jatropha development.

Does epigenetic polymorphism contribute to phenotypic variances in Jatropha curcas L.?

PubMed Central

2010-01-01

Background There is a growing interest in Jatropha curcas L. (jatropha) as a biodiesel feedstock plant. Variations in its morphology and seed productivity have been well documented. However, there is the lack of systematic comparative evaluation of distinct collections under same climate and agronomic practices. With the several reports on low genetic diversity in jatropha collections, there is uncertainty on genetic contribution to jatropha morphology. Result In this study, five populations of jatropha plants collected from China (CN), Indonesia (MD), Suriname (SU), Tanzania (AF) and India (TN) were planted in one farm under the same agronomic practices. Their agronomic traits (branching pattern, height, diameter of canopy, time to first flowering, dormancy, accumulated seed yield and oil content) were observed and tracked for two years. Significant variations were found for all the agronomic traits studied. Genetic diversity and epigenetic diversity were evaluated using florescence Amplified Fragment Length Polymorphism (fAFLP) and methylation sensitive florescence AFLP (MfAFLP) methods. Very low level of genetic diversity was detected (polymorphic band <0.1%) within and among populations. In contrast, intermediate but significant epigenetic diversity was detected (25.3% of bands were polymorphic) within and among populations. More than half of CCGG sites surveyed by MfAFLP were methylated with significant difference in inner cytosine and double cytosine methylation among populations. Principal coordinates analysis (PCoA) based on Nei's epigenetic distance showed Tanzania/India group distinct from China/Indonesia/Suriname group. Inheritance of epigenetic markers was assessed in one F1 hybrid population between two morphologically distinct parent plants and one selfed population. 30 out of 39 polymorphic markers (77%) were found heritable and followed Mendelian segregation. One epiallele was further confirmed by bisulphite sequencing of its corresponding genomic region. Conclusion Our study confirmed climate and practice independent differences in agronomic performance among jatropha collections. Such agronomic trait variations, however, were matched by very low genetic diversity and medium level but significant epigenetic diversity. Significant difference in inner cytosine and double cytosine methylation at CCGG sites was also found among populations. Most epigenetic differential markers can be inherited as epialleles following Mendelian segregation. These results suggest possible involvement of epigenetics in jatropha development. PMID:21092236

Humic Substances in Organic Wastes and their Effects on Amended Soils

NASA Astrophysics Data System (ADS)

Senesi, N.; Ciavatta, C.; Plaza, C.

2009-04-01

Soil humic substances (HS) are universally recognized to play a major role in a wide number of agronomic and environmental processes. For example, soil HS are able to bind mineral particles together, thus promoting a good soil structure, constitute an important source of nutrients for plants and microorganisms, contribute largely to the acid-base buffering capacity of soils, and exert a marked control on the biological availability, physico-chemical behavior, and environmental fate of toxic metal ions and xenobiotics. For these reasons, the knowledge of the short- and long-term effects of organic amendments on the status, quality, and reactivity of indigenous soil HS is of paramount importance. The objective of this presentation is to provide an overview of the chemical and physico-chemical data available in the literature for the evaluation of the effects of organic wastes of various origin and nature used as soil amendments on the composition, structure, and chemical reactivity of native soil HS. In general, HS-like components of organic wastes are typically characterized by a relatively larger presence of aliphatic, amide, and polysaccharide structures, simple structural components of wide molecular heterogeneity, smaller contents of oxygen, acidic functional groups, and organic free radicals, and smaller degrees of aromatic ring polycondensation, polymerization, and humification than native soil HS. Further, with respect to native soil HS, HS-like fractions from organic wastes generally exhibit smaller binding capacities and affinities for metal ions and organic xenobiotics. Appropriate treatment processes of raw organic wastes able to produce environmentally safe and agronomically efficient soil amendments, such as composting, yield HS-like fractions characterized by chemical and physico-chemical features that approach those of native soil HS. In general, aliphatic, polysaccharide, and lignin structures and S- and N-containing groups of the HS-like fractions of organic wastes can be partially incorporated into native soil HS determining modifications at various extents of their composition, structure, and chemistry. The changes occurred in amended soil HS are more evident when untreated organic materials are used. However, with increasing time after land application, the effects observed become less and less apparent with a clear trend to approach the molecular properties typical of native soil HS.

Assessing and Exploiting Functional Diversity in Germplasm Pools to Enhance Abiotic Stress Adaptation and Yield in Cereals and Food Legumes

PubMed Central

Dwivedi, Sangam L.; Scheben, Armin; Edwards, David; Spillane, Charles; Ortiz, Rodomiro

2017-01-01

There is a need to accelerate crop improvement by introducing alleles conferring host plant resistance, abiotic stress adaptation, and high yield potential. Elite cultivars, landraces and wild relatives harbor useful genetic variation that needs to be more easily utilized in plant breeding. We review genome-wide approaches for assessing and identifying alleles associated with desirable agronomic traits in diverse germplasm pools of cereals and legumes. Major quantitative trait loci and single nucleotide polymorphisms (SNPs) associated with desirable agronomic traits have been deployed to enhance crop productivity and resilience. These include alleles associated with variation conferring enhanced photoperiod and flowering traits. Genetic variants in the florigen pathway can provide both environmental flexibility and improved yields. SNPs associated with length of growing season and tolerance to abiotic stresses (precipitation, high temperature) are valuable resources for accelerating breeding for drought-prone environments. Both genomic selection and genome editing can also harness allelic diversity and increase productivity by improving multiple traits, including phenology, plant architecture, yield potential and adaptation to abiotic stresses. Discovering rare alleles and useful haplotypes also provides opportunities to enhance abiotic stress adaptation, while epigenetic variation has potential to enhance abiotic stress adaptation and productivity in crops. By reviewing current knowledge on specific traits and their genetic basis, we highlight recent developments in the understanding of crop functional diversity and identify potential candidate genes for future use. The storage and integration of genetic, genomic and phenotypic information will play an important role in ensuring broad and rapid application of novel genetic discoveries by the plant breeding community. Exploiting alleles for yield-related traits would allow improvement of selection efficiency and overall genetic gain of multigenic traits. An integrated approach involving multiple stakeholders specializing in management and utilization of genetic resources, crop breeding, molecular biology and genomics, agronomy, stress tolerance, and reproductive/seed biology will help to address the global challenge of ensuring food security in the face of growing resource demands and climate change induced stresses. PMID:28900432

Applying genotyping (TILLING) and phenotyping analyses to elucidate gene function in a chemically induced sorghum mutant population

PubMed Central

Xin, Zhanguo; Li Wang, Ming; Barkley, Noelle A; Burow, Gloria; Franks, Cleve; Pederson, Gary; Burke, John

2008-01-01

Background Sorghum [Sorghum bicolor (L.) Moench] is ranked as the fifth most important grain crop and serves as a major food staple and fodder resource for much of the world, especially in arid and semi-arid regions. The recent surge in sorghum research is driven by its tolerance to drought/heat stresses and its strong potential as a bioenergy feedstock. Completion of the sorghum genome sequence has opened new avenues for sorghum functional genomics. However, the availability of genetic resources, specifically mutant lines, is limited. Chemical mutagenesis of sorghum germplasm, followed by screening for mutants altered in important agronomic traits, represents a rapid and effective means of addressing this limitation. Induced mutations in novel genes of interest can be efficiently assessed using the technique known as Targeting Induced Local Lesion IN Genomes (TILLING). Results A sorghum mutant population consisting of 1,600 lines was generated from the inbred line BTx623 by treatment with the chemical agent ethyl methanesulfonate (EMS). Numerous phenotypes with altered morphological and agronomic traits were observed from M2 and M3 lines in the field. A subset of 768 mutant lines was analyzed by TILLING using four target genes. A total of five mutations were identified resulting in a calculated mutation density of 1/526 kb. Two of the mutations identified by TILLING and verified by sequencing were detected in the gene encoding caffeic acid O-methyltransferase (COMT) in two independent mutant lines. The two mutant lines segregated for the expected brown midrib (bmr) phenotype, a trait associated with altered lignin content and increased digestibility. Conclusion TILLING as a reverse genetic approach has been successfully applied to sorghum. The diversity of the mutant phenotypes observed in the field, and the density of induced mutations calculated from TILLING indicate that this mutant population represents a useful resource for members of the sorghum research community. Moreover, TILLING has been demonstrated to be applicable for sorghum functional genomics by evaluating a small subset of the EMS-induced mutant lines. PMID:18854043

Assessing and Exploiting Functional Diversity in Germplasm Pools to Enhance Abiotic Stress Adaptation and Yield in Cereals and Food Legumes.

PubMed

Dwivedi, Sangam L; Scheben, Armin; Edwards, David; Spillane, Charles; Ortiz, Rodomiro

2017-01-01

There is a need to accelerate crop improvement by introducing alleles conferring host plant resistance, abiotic stress adaptation, and high yield potential. Elite cultivars, landraces and wild relatives harbor useful genetic variation that needs to be more easily utilized in plant breeding. We review genome-wide approaches for assessing and identifying alleles associated with desirable agronomic traits in diverse germplasm pools of cereals and legumes. Major quantitative trait loci and single nucleotide polymorphisms (SNPs) associated with desirable agronomic traits have been deployed to enhance crop productivity and resilience. These include alleles associated with variation conferring enhanced photoperiod and flowering traits. Genetic variants in the florigen pathway can provide both environmental flexibility and improved yields. SNPs associated with length of growing season and tolerance to abiotic stresses (precipitation, high temperature) are valuable resources for accelerating breeding for drought-prone environments. Both genomic selection and genome editing can also harness allelic diversity and increase productivity by improving multiple traits, including phenology, plant architecture, yield potential and adaptation to abiotic stresses. Discovering rare alleles and useful haplotypes also provides opportunities to enhance abiotic stress adaptation, while epigenetic variation has potential to enhance abiotic stress adaptation and productivity in crops. By reviewing current knowledge on specific traits and their genetic basis, we highlight recent developments in the understanding of crop functional diversity and identify potential candidate genes for future use. The storage and integration of genetic, genomic and phenotypic information will play an important role in ensuring broad and rapid application of novel genetic discoveries by the plant breeding community. Exploiting alleles for yield-related traits would allow improvement of selection efficiency and overall genetic gain of multigenic traits. An integrated approach involving multiple stakeholders specializing in management and utilization of genetic resources, crop breeding, molecular biology and genomics, agronomy, stress tolerance, and reproductive/seed biology will help to address the global challenge of ensuring food security in the face of growing resource demands and climate change induced stresses.

Molecular Breeding to Improve Salt Tolerance of Rice (Oryza sativa L.) in the Red River Delta of Vietnam

PubMed Central

Linh, Le Hung; Linh, Ta Hong; Xuan, Tran Dang; Ham, Le Huy; Ismail, Abdelbagi M.; Khanh, Tran Dang

2012-01-01

Rice is a stable food in Vietnam and plays a key role in the economy of the country. However, the production and the cultivating areas are adversely affected from the threats of devastation caused by the rise of sea level. Using marker-assisted backcrossing (MABC) to develop a new salt tolerance rice cultivar is one of the feasible methods to cope with these devastating changes. To improve rice salt tolerance in BT7 cultivar, FL478 was used as a donor parent to introgress the Saltol QTL conferring salt tolerance into BT7. Three backcrosses were conducted and successfully transferred positive alleles of Saltol from FL478 into BT7. The plants numbers IL-30 and IL-32 in BC3F1 population expected recurrent genome recovery of up to 99.2% and 100%, respectively. These selected lines that carried the Saltol alleles were screened in field for their agronomic traits. All improved lines had Saltol allele similar to the donor parent FL478, whereas their agronomic performances were the same as the original BT7. We show here the success of improving rice salt tolerance by MABC and the high efficiency of selection in early generations. In the present study, MABC has accelerated the development of superior qualities in the genetic background of BT7. PMID:23326259

Agronomic and environmental consequences of using liquid mineral concentrates on arable farms.

PubMed

Schils, René L M; Postma, Romke; van Rotterdam, Debby; Zwart, Kor B

2015-12-01

In regions with intensive livestock systems, the processing of manure into liquid mineral concentrates is seen as an option to increase the nutrient use efficiency of manures. The agricultural sector anticipates that these products may in future be regarded as regular mineral fertilisers. We assessed the agronomic suitability and impact on greenhouse gas (GHG) and ammonia emissions of using liquid mineral concentrates on arable farms. The phosphate requirements on arable farms were largely met by raw pig slurry, given its large regional availability. After the initial nutrient input by means of pig slurry, the nitrogen/phosphate ratio of the remaining nutrient crop requirements determined the additional amount of liquid mineral concentrates that can be used. For sandy soils, liquid mineral concentrates could supply 50% of the nitrogen requirement, whereas for clay soils the concentrates did not meet the required nitrogen/phosphate ratio. The total GHG emissions per kg of plant available nitrogen ranged from -65 to 33 kg CO2 -equivalents. It increased in the order digestates < mineral fertiliser < raw slurries. Liquid mineral concentrates had limited added value for arable farms. For an increased suitability it is necessary that liquid mineral concentrates do not contain phosphate and that the nitrogen availability is increased. In the manure-processing chain, anaerobic digestion had a dominant and beneficial effect on GHG emissions. © 2015 Society of Chemical Industry.

Energetics and environmental costs of agriculture in a dry tropical region of India

NASA Astrophysics Data System (ADS)

Singh, V. P.; Singh, J. S.

1992-07-01

The present article, based on a study of five village ecosystems, assesses the energy efficiency of rain-fed agriculture in a dry tropical environment and the impact of agricultural activity on the surrounding natural ecosystems. Agronomic yield is insufficient to meet the food requirement of the human population, hence 11.5%-49.7% of the required amount of food grains are imported from the market. Energy requirements of five studied agroecosystems are subsidized considerably by the surrounding forest in the form of fodder and firewood. Natural ecosystems supply about 80%-95% of fodder needs and 81%-100% of fuelwood needs. The output-input ratio of agriculture indicated that, on average, 4.1 units of energy are expended to obtain one unit of agronomic energy. Of this, 3.9 units are supplied by the natural ecosystem. In addition, 38% of the extracted firewood is marketed. The illegal felling and lopping of trees result in ever-increasing concentric circles of forest destruction around the villages and together with excessive grazing results in savannization. The forests can be conserved by encouraging fuelwood plantations (0.7 ha/ha cultivated land) and developing village pastures (1.6 ha/ha cultivated land) and reducing the livestock numbers. Agricultural production in the region can be stabilized by introducing improved dry farming techniques such as intercropping, planned rainwater management, and adequate use of fertilizers.

Vertical Stratification of Soil Phosphorus as a Concern for Dissolved Phosphorus Runoff in the Lake Erie Basin.

PubMed

Baker, David B; Johnson, Laura T; Confesor, Remegio B; Crumrine, John P

2017-11-01

During the re-eutrophication of Lake Erie, dissolved reactive phosphorus (DRP) loading and concentrations to the lake have nearly doubled, while particulate phosphorus (PP) has remained relatively constant. One potential cause of increased DRP concentrations is P stratification, or the buildup of soil-test P (STP) in the upper soil layer (<5 cm). Stratification often accompanies no-till and mulch-till practices that reduce erosion and PP loading, practices that have been widely implemented throughout the Lake Erie Basin. To evaluate the extent of P stratification in the Sandusky Watershed, certified crop advisors were enlisted to collect stratified soil samples (0-5 or 0-2.5 cm) alongside their normal agronomic samples (0-20 cm) ( = 1758 fields). The mean STP level in the upper 2.5 cm was 55% higher than the mean of agronomic samples used for fertilizer recommendations. The amounts of stratification were highly variable and did not correlate with agronomic STPs (Spearman's = 0.039, = 0.178). Agronomic STP in 70% of the fields was within the buildup or maintenance ranges for corn ( L.) and soybeans [ (L.) Merr.] (0-46 mg kg Mehlich-3 P). The cumulative risks for DRP runoff from the large number of fields in the buildup and maintenance ranges exceeded the risks from fields above those ranges. Reducing stratification by a one-time soil inversion has the potential for larger and quicker reductions in DRP runoff risk than practices related to drawing down agronomic STP levels. Periodic soil inversion and mixing, targeted by stratified STP data, should be considered a viable practice to reduce DRP loading to Lake Erie. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Assessment of agronomic homogeneity and compatibility of soils in the Vladimir Opolie region

NASA Astrophysics Data System (ADS)

Shein, E. V.; Kiryushin, V. I.; Korchagin, A. A.; Mazirov, M. A.; Dembovetskii, A. V.; Il'in, L. I.

2017-10-01

Complexes of gray forest soils of different podzolization degrees with the participation of gray forest podzolized soils with the second humus horizon play a noticeable role in the soil cover patterns of Vladimir Opolie. The agronomic homogeneity and agronomic compatibility of gray forest soils in automorphic positions ("plakor" sites) were assessed on the test field of the Vladimir Agricultural Research Institute. The term "soil homogeneity" implies in our study the closeness of crop yield estimates (scores) for the soil polygons; the term "soil compatibility" implies the possibility to apply the same technologies in the same dates for different soil polygons within a field. To assess the agronomic homogeneity and compatibility of soils, the statistical analysis of the yields of test crop (oats) was performed, and the spatial distribution of the particular parameters of soil hydrothermic regime was studied. The analysis of crop yields showed their high variability: the gray forest soils on microhighs showed the minimal potential fertility, and the maximal fertility was typical of the soils with the second humus horizon in microlows. Soils also differed significantly in their hydrothermic regime, as the gray forest soils with the second humus horizon were heated and cooled slower than the background gray forest soils; their temperature had a stronger lag effect and displayed a narrower amplitude in seasonal fluctuations; and these soils were wetter during the first weeks (40 days) of the growing season. Being colder and wetter, the soils with the second humus horizons reached their physical ripeness later than the gray forest soils. Thus, the soil cover of the test plot in the automorphic position is heterogeneous; from the agronomic standpoint, its components are incompatible.

Evaluation of Borage Extracts As Potential Biostimulant Using a Phenomic, Agronomic, Physiological, and Biochemical Approach.

PubMed

Bulgari, Roberta; Morgutti, Silvia; Cocetta, Giacomo; Negrini, Noemi; Farris, Stefano; Calcante, Aldo; Spinardi, Anna; Ferrari, Enrico; Mignani, Ilaria; Oberti, Roberto; Ferrante, Antonio

2017-01-01

Biostimulants are substances able to improve water and nutrient use efficiency and counteract stress factors by enhancing primary and secondary metabolism. Premise of the work was to exploit raw extracts from leaves (LE) or flowers (FE) of Borago officinalis L., to enhance yield and quality of Lactuca sativa 'Longifolia,' and to set up a protocol to assess their effects. To this aim, an integrated study on agronomic, physiological and biochemical aspects, including also a phenomic approach, has been adopted. Extracts were diluted to 1 or 10 mL L -1 , sprayed onto lettuce plants at the middle of the growing cycle and 1 day before harvest. Control plants were treated with water. Non-destructive analyses were conducted to assess the effect of extracts on biomass with an innovative imaging technique, and on leaf photosynthetic efficiency (chlorophyll a fluorescence and leaf gas exchanges). At harvest, the levels of ethylene, photosynthetic pigments, nitrate, and primary (sucrose and total sugars) and secondary (total phenols and flavonoids) metabolites, including the activity and levels of phenylalanine ammonia lyase (PAL) were assessed. Moreover, a preliminary study of the effects during postharvest was performed. Borage extracts enhanced the primary metabolism by increasing leaf pigments and photosynthetic activity. Plant fresh weight increased upon treatments with 10 mL L -1 doses, as correctly estimated by multi-view angles images. Chlorophyll a fluorescence data showed that FEs were able to increase the number of active reaction centers per cross section; a similar trend was observed for the performance index. Ethylene was three-fold lower in FEs treatments. Nitrate and sugar levels did not change in response to the different treatments. Total flavonoids and phenols, as well as the total protein levels, the in vitro PAL specific activity, and the levels of PAL-like polypeptides were increased by all borage extracts, with particular regard to FEs. FEs also proved efficient in preventing degradation and inducing an increase in photosynthetic pigments during storage. In conclusion, borage extracts, with particular regard to the flower ones, appear to indeed exert biostimulant effects on lettuce; future work will be required to further investigate on their efficacy in different conditions and/or species.

Use of CRISPR/Cas Genome Editing Technology for Targeted Mutagenesis in Rice.

PubMed

Xu, Rongfang; Wei, Pengcheng; Yang, Jianbo

2017-01-01

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-associated protein (Cas) system is a newly emerging mutagenesis (gene-editing) tool in genetic engineering. Among the agriculturally important crops, several genes have been successfully mutated by the system, and some agronomic important traits have been rapidly generated, which indicates the potential applications in both scientific research and plant breeding. In this chapter, we describe a standard gene-editing procedure to effectively target rice genes and to make specific rice mutants using the CRISPR/Cas9 system mediated by Agrobacterium transformation.

Modern maize hybrids in Northeast China exhibit increased yield potential and resource use efficiency despite adverse climate change.

PubMed

Chen, Xiaochao; Chen, Fanjun; Chen, Yanling; Gao, Qiang; Yang, Xiaoli; Yuan, Lixing; Zhang, Fusuo; Mi, Guohua

2013-03-01

The impact of global changes on food security is of serious concern. Breeding novel crop cultivars adaptable to climate change is one potential solution, but this approach requires an understanding of complex adaptive traits for climate-change conditions. In this study, plant growth, nitrogen (N) uptake, and yield in relation to climatic resource use efficiency of nine representative maize cultivars released between 1973 and 2000 in China were investigated in a 2-year field experiment under three N applications. The Hybrid-Maize model was used to simulate maize yield potential in the period from 1973 to 2011. During the past four decades, the total thermal time (growing degree days) increased whereas the total precipitation and sunshine hours decreased. This climate change led to a reduction of maize potential yield by an average of 12.9% across different hybrids. However, the potential yield of individual hybrids increased by 118.5 kg ha(-1)  yr(-1) with increasing year of release. From 1973 to 2000, the use efficiency of sunshine hours, thermal time, and precipitation resources increased by 37%, 40%, and 41%, respectively. The late developed hybrids showed less reduction in yield potential in current climate conditions than old cultivars, indicating some adaptation to new conditions. Since the mid-1990s, however, the yield impact of climate change exhibited little change, and even a slight worsening for new cultivars. Modern breeding increased ear fertility and grain-filling rate, and delayed leaf senescence without modification in net photosynthetic rate. The trade-off associated with delayed leaf senescence was decreased grain N concentration rather than increased plant N uptake, therefore N agronomic efficiency increased simultaneously. It is concluded that modern maize hybrids tolerate the climatic changes mainly by constitutively optimizing plant productivity. Maize breeding programs in the future should pay more attention to cope with the limiting climate factors specifically. © 2012 Blackwell Publishing Ltd.

Photoreceptor Mediated Plant Growth Responses: Implications for Photoreceptor Engineering toward Improved Performance in Crops

PubMed Central

Mawphlang, Ophilia I. L.; Kharshiing, Eros V.

2017-01-01

Rising temperatures during growing seasons coupled with altered precipitation rates presents a challenging task of improving crop productivity for overcoming such altered weather patterns and cater to a growing population. Light is a critical environmental factor that exerts a powerful influence on plant growth and development ranging from seed germination to flowering and fruiting. Higher plants utilize a suite of complex photoreceptor proteins to perceive surrounding red/far-red (phytochromes), blue/UV-A (cryptochromes, phototropins, ZTL/FKF1/LKP2), and UV-B light (UVR8). While genomic studies have also shown that light induces extensive reprogramming of gene expression patterns in plants, molecular genetic studies have shown that manipulation of one or more photoreceptors can result in modification of agronomically beneficial traits. Such information can assist researchers to engineer photoreceptors via genome editing technologies to alter expression or even sensitivity thresholds of native photoreceptors for targeting aspects of plant growth that can confer superior agronomic value to the engineered crops. Here we summarize the agronomically important plant growth processes influenced by photoreceptors in crop species, alongwith the functional interactions between different photoreceptors and phytohormones in regulating these responses. We also discuss the potential utility of synthetic biology approaches in photobiology for improving agronomically beneficial traits of crop plants by engineering designer photoreceptors. PMID:28744290

Evaluating the potential for weed seed dispersal based on waterfowl consumption and seed viability

USGS Publications Warehouse

Farmer, Jaime A.; Webb, Elisabeth B.; Pierce, Robert A.; Bradley, Kevin W.

2017-01-01

BACKGROUNDMigratory waterfowl have often been implicated in the movement of troublesome agronomic and wetland weed species. However, minimal research has been conducted to investigate the dispersal of agronomically important weed species by waterfowl. The two objectives for this project were to determine what weed species are being consumed by ducks and snow geese, and to determine the recovery rate and viability of 13 agronomic weed species after passage through a duck's digestive system.RESULTSSeed recovered from digestive tracts of 526 ducks and geese harvested during a 2‐year field study had 35 020 plants emerge. A greater variety of plant species emerged from ducks each year (47 and 31 species) compared to geese (11 and 3 species). Viable seed from 11 of 13 weed species fed to ducks in a controlled feeding study were recovered. Viability rate and gut retention times indicated potential dispersal up to 2900 km from the source depending on seed characteristics and variability in waterfowl dispersal distances.CONCLUSIONSStudy results confirm that waterfowl are consuming seeds from a variety of agronomically important weed species, including Palmer amaranth, which can remain viable after passage through digestive tracts and have potential to be dispersed over long distances by waterfowl.

Evaluating the potential for weed seed dispersal based on waterfowl consumption and seed viability.

PubMed

Farmer, Jaime A; Webb, Elisabeth B; Pierce, Robert A; Bradley, Kevin W

2017-12-01

Migratory waterfowl have often been implicated in the movement of troublesome agronomic and wetland weed species. However, minimal research has been conducted to investigate the dispersal of agronomically important weed species by waterfowl. The two objectives for this project were to determine what weed species are being consumed by ducks and snow geese, and to determine the recovery rate and viability of 13 agronomic weed species after passage through a duck's digestive system. Seed recovered from digestive tracts of 526 ducks and geese harvested during a 2-year field study had 35 020 plants emerge. A greater variety of plant species emerged from ducks each year (47 and 31 species) compared to geese (11 and 3 species). Viable seed from 11 of 13 weed species fed to ducks in a controlled feeding study were recovered. Viability rate and gut retention times indicated potential dispersal up to 2900 km from the source depending on seed characteristics and variability in waterfowl dispersal distances. Study results confirm that waterfowl are consuming seeds from a variety of agronomically important weed species, including Palmer amaranth, which can remain viable after passage through digestive tracts and have potential to be dispersed over long distances by waterfowl. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Development of a RAD-Seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding

PubMed Central

Luo, Zhijing; Chen, Mingjiao; Zhao, Xiangxiang; Zhang, Dabing; Qi, Yiping; Yuan, Zheng

2016-01-01

Rapid and accurate genome-wide marker detection is essential to the marker-assisted breeding and functional genomics studies. In this work, we developed an integrated software, AgroMarker Finder (AMF: http://erp.novelbio.com/AMF), for providing graphical user interface (GUI) to facilitate the recently developed restriction-site associated DNA (RAD) sequencing data analysis in rice. By application of AMF, a total of 90,743 high-quality markers (82,878 SNPs and 7,865 InDels) were detected between rice varieties JP69 and Jiaoyuan5A. The density of the identified markers is 0.2 per Kb for SNP markers, and 0.02 per Kb for InDel markers. Sequencing validation revealed that the accuracy of genome-wide marker detection by AMF is 93%. In addition, a validated subset of 82 SNPs and 31 InDels were found to be closely linked to 117 important agronomic trait genes, providing a basis for subsequent marker-assisted selection (MAS) and variety identification. Furthermore, we selected 12 markers from 31 validated InDel markers to identify seed authenticity of variety Jiaoyuanyou69, and we also identified 10 markers closely linked to the fragrant gene BADH2 to minimize linkage drag for Wuxiang075 (BADH2 donor)/Jiachang1 recombinants selection. Therefore, this software provides an efficient approach for marker identification from RAD-seq data, and it would be a valuable tool for plant MAS and variety protection. PMID:26799713

Development of a RAD-Seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding.

PubMed

Fan, Wei; Zong, Jie; Luo, Zhijing; Chen, Mingjiao; Zhao, Xiangxiang; Zhang, Dabing; Qi, Yiping; Yuan, Zheng

2016-01-01

Rapid and accurate genome-wide marker detection is essential to the marker-assisted breeding and functional genomics studies. In this work, we developed an integrated software, AgroMarker Finder (AMF: http://erp.novelbio.com/AMF), for providing graphical user interface (GUI) to facilitate the recently developed restriction-site associated DNA (RAD) sequencing data analysis in rice. By application of AMF, a total of 90,743 high-quality markers (82,878 SNPs and 7,865 InDels) were detected between rice varieties JP69 and Jiaoyuan5A. The density of the identified markers is 0.2 per Kb for SNP markers, and 0.02 per Kb for InDel markers. Sequencing validation revealed that the accuracy of genome-wide marker detection by AMF is 93%. In addition, a validated subset of 82 SNPs and 31 InDels were found to be closely linked to 117 important agronomic trait genes, providing a basis for subsequent marker-assisted selection (MAS) and variety identification. Furthermore, we selected 12 markers from 31 validated InDel markers to identify seed authenticity of variety Jiaoyuanyou69, and we also identified 10 markers closely linked to the fragrant gene BADH2 to minimize linkage drag for Wuxiang075 (BADH2 donor)/Jiachang1 recombinants selection. Therefore, this software provides an efficient approach for marker identification from RAD-seq data, and it would be a valuable tool for plant MAS and variety protection.

Lipids: From Chemical Structures, Biosynthesis, and Analyses to Industrial Applications.

PubMed

Li-Beisson, Yonghua; Nakamura, Yuki; Harwood, John

2016-01-01

Lipids are one of the major subcellular components, and play numerous essential functions. As well as their physiological roles, oils stored in biomass are useful commodities for a variety of biotechnological applications including food, chemical feedstocks, and fuel. Due to their agronomic as well as economic and societal importance, lipids have historically been subjected to intensive studies. Major current efforts are to increase the energy density of cell biomass, and/or create designer oils suitable for specific applications. This chapter covers some basic aspects of what one needs to know about lipids: definition, structure, function, metabolism and focus is also given on the development of modern lipid analytical tools and major current engineering approaches for biotechnological applications. This introductory chapter is intended to serve as a primer for all subsequent chapters in this book outlining current development in specific areas of lipids and their metabolism.

Plant growth-promoting bacteria as inoculants in agricultural soils

PubMed Central

de Souza, Rocheli; Ambrosini, Adriana; Passaglia, Luciane M.P.

2015-01-01

Abstract Plant-microbe interactions in the rhizosphere are the determinants of plant health, productivity and soil fertility. Plant growth-promoting bacteria (PGPB) are bacteria that can enhance plant growth and protect plants from disease and abiotic stresses through a wide variety of mechanisms; those that establish close associations with plants, such as the endophytes, could be more successful in plant growth promotion. Several important bacterial characteristics, such as biological nitrogen fixation, phosphate solubilization, ACC deaminase activity, and production of siderophores and phytohormones, can be assessed as plant growth promotion (PGP) traits. Bacterial inoculants can contribute to increase agronomic efficiency by reducing production costs and environmental pollution, once the use of chemical fertilizers can be reduced or eliminated if the inoculants are efficient. For bacterial inoculants to obtain success in improving plant growth and productivity, several processes involved can influence the efficiency of inoculation, as for example the exudation by plant roots, the bacterial colonization in the roots, and soil health. This review presents an overview of the importance of soil-plant-microbe interactions to the development of efficient inoculants, once PGPB are extensively studied microorganisms, representing a very diverse group of easily accessible beneficial bacteria. PMID:26537605

An Efficient Strategy Combining SSR Markers- and Advanced QTL-seq-driven QTL Mapping Unravels Candidate Genes Regulating Grain Weight in Rice

PubMed Central

Daware, Anurag; Das, Sweta; Srivastava, Rishi; Badoni, Saurabh; Singh, Ashok K.; Agarwal, Pinky; Parida, Swarup K.; Tyagi, Akhilesh K.

2016-01-01

Development and use of genome-wide informative simple sequence repeat (SSR) markers and novel integrated genomic strategies are vital to drive genomics-assisted breeding applications and for efficient dissection of quantitative trait loci (QTLs) underlying complex traits in rice. The present study developed 6244 genome-wide informative SSR markers exhibiting in silico fragment length polymorphism based on repeat-unit variations among genomic sequences of 11 indica, japonica, aus, and wild rice accessions. These markers were mapped on diverse coding and non-coding sequence components of known cloned/candidate genes annotated from 12 chromosomes and revealed a much higher amplification (97%) and polymorphic potential (88%) along with wider genetic/functional diversity level (16–74% with a mean 53%) especially among accessions belonging to indica cultivar group, suggesting their utility in large-scale genomics-assisted breeding applications in rice. A high-density 3791 SSR markers-anchored genetic linkage map (IR 64 × Sonasal) spanning 2060 cM total map-length with an average inter-marker distance of 0.54 cM was generated. This reference genetic map identified six major genomic regions harboring robust QTLs (31% combined phenotypic variation explained with a 5.7–8.7 LOD) governing grain weight on six rice chromosomes. One strong grain weight major QTL region (OsqGW5.1) was narrowed-down by integrating traditional QTL mapping with high-resolution QTL region-specific integrated SSR and single nucleotide polymorphism markers-based QTL-seq analysis and differential expression profiling. This led us to delineate two natural allelic variants in two known cis-regulatory elements (RAV1AAT and CARGCW8GAT) of glycosyl hydrolase and serine carboxypeptidase genes exhibiting pronounced seed-specific differential regulation in low (Sonasal) and high (IR 64) grain weight mapping parental accessions. Our genome-wide SSR marker resource (polymorphic within/between diverse cultivar groups) and integrated genomic strategy can efficiently scan functionally relevant potential molecular tags (markers, candidate genes and alleles) regulating complex agronomic traits (grain weight) and expedite marker-assisted genetic enhancement in rice. PMID:27833617

High-throughput measurement of rice tillers using a conveyor equipped with x-ray computed tomography

NASA Astrophysics Data System (ADS)

Yang, Wanneng; Xu, Xiaochun; Duan, Lingfeng; Luo, Qingming; Chen, Shangbin; Zeng, Shaoqun; Liu, Qian

2011-02-01

Tillering is one of the most important agronomic traits because the number of shoots per plant determines panicle number, a key component of grain yield. The conventional method of counting tillers is still manual. Under the condition of mass measurement, the accuracy and efficiency could be gradually degraded along with fatigue of experienced staff. Thus, manual measurement, including counting and recording, is not only time consuming but also lack objectivity. To automate this process, we developed a high-throughput facility, dubbed high-throughput system for measuring automatically rice tillers (H-SMART), for measuring rice tillers based on a conventional x-ray computed tomography (CT) system and industrial conveyor. Each pot-grown rice plant was delivered into the CT system for scanning via the conveyor equipment. A filtered back-projection algorithm was used to reconstruct the transverse section image of the rice culms. The number of tillers was then automatically extracted by image segmentation. To evaluate the accuracy of this system, three batches of rice at different growth stages (tillering, heading, or filling) were tested, yielding absolute mean absolute errors of 0.22, 0.36, and 0.36, respectively. Subsequently, the complete machine was used under industry conditions to estimate its efficiency, which was 4320 pots per continuous 24 h workday. Thus, the H-SMART could determine the number of tillers of pot-grown rice plants, providing three advantages over the manual tillering method: absence of human disturbance, automation, and high throughput. This facility expands the application of agricultural photonics in plant phenomics.

High-throughput measurement of rice tillers using a conveyor equipped with x-ray computed tomography.

PubMed

Yang, Wanneng; Xu, Xiaochun; Duan, Lingfeng; Luo, Qingming; Chen, Shangbin; Zeng, Shaoqun; Liu, Qian

2011-02-01

Tillering is one of the most important agronomic traits because the number of shoots per plant determines panicle number, a key component of grain yield. The conventional method of counting tillers is still manual. Under the condition of mass measurement, the accuracy and efficiency could be gradually degraded along with fatigue of experienced staff. Thus, manual measurement, including counting and recording, is not only time consuming but also lack objectivity. To automate this process, we developed a high-throughput facility, dubbed high-throughput system for measuring automatically rice tillers (H-SMART), for measuring rice tillers based on a conventional x-ray computed tomography (CT) system and industrial conveyor. Each pot-grown rice plant was delivered into the CT system for scanning via the conveyor equipment. A filtered back-projection algorithm was used to reconstruct the transverse section image of the rice culms. The number of tillers was then automatically extracted by image segmentation. To evaluate the accuracy of this system, three batches of rice at different growth stages (tillering, heading, or filling) were tested, yielding absolute mean absolute errors of 0.22, 0.36, and 0.36, respectively. Subsequently, the complete machine was used under industry conditions to estimate its efficiency, which was 4320 pots per continuous 24 h workday. Thus, the H-SMART could determine the number of tillers of pot-grown rice plants, providing three advantages over the manual tillering method: absence of human disturbance, automation, and high throughput. This facility expands the application of agricultural photonics in plant phenomics.

Global warming potential and greenhouse gas intensity in rice agriculture driven by high yields and nitrogen use efficiency

NASA Astrophysics Data System (ADS)

Zhang, Xiaoxu; Xu, Xin; Liu, Yinglie; Wang, Jinyang; Xiong, Zhengqin

2016-05-01

Our understanding of how global warming potential (GWP) and greenhouse gas intensity (GHGI) is affected by management practices aimed at food security with respect to rice agriculture remains limited. In the present study, a field experiment was conducted in China to evaluate the effects of integrated soil-crop system management (ISSM) on GWP and GHGI after accounting for carbon dioxide (CO2) equivalent emissions from all sources, including methane (CH4) and nitrous oxide (N2O) emissions, agrochemical inputs and farm operations and sinks (i.e., soil organic carbon sequestration). The ISSM mainly consisted of different nitrogen (N) fertilization rates and split, manure, Zn and Na2SiO3 fertilization and planting density for the improvement of rice yield and agronomic nitrogen use efficiency (NUE). Four ISSM scenarios consisting of different chemical N rates relative to the local farmers' practice (FP) rate were carried out, namely, ISSM-N1 (25 % reduction), ISSM-N2 (10 % reduction), ISSM-N3 (FP rate) and ISSM-N4 (25 % increase). The results showed that compared with the FP, the four ISSM scenarios significantly increased the rice yields by 10, 16, 28 and 41 % and the agronomic NUE by 75, 67, 35 and 40 %, respectively. In addition, compared with the FP, the ISSM-N1 and ISSM-N2 scenarios significantly reduced the GHGI by 14 and 18 %, respectively, despite similar GWPs. The ISSM-N3 and ISSM-N4 scenarios remarkably increased the GWP and GHGI by an average of 69 and 39 %, respectively. In conclusion, the ISSM strategies are promising for both food security and environmental protection, and the ISSM scenario of ISSM-N2 is the optimal strategy to realize high yields and high NUE together with low environmental impacts for this agricultural rice field.

Long-term on-farm participatory maize breeding by stratified mass selection retains molecular diversity while improving agronomic performance.

PubMed

Alves, Mara Lisa; Belo, Maria; Carbas, Bruna; Brites, Cláudia; Paulo, Manuel; Mendes-Moreira, Pedro; Brites, Carla; Bronze, Maria do Rosário; Šatović, Zlatko; Vaz Patto, Maria Carlota

2018-02-01

Modern maize breeding programs gave rise to genetically uniform varieties that can affect maize's capacity to cope with increasing climate unpredictability. Maize populations, genetically more heterogeneous, can evolve and better adapt to a broader range of edaphic-climatic conditions. These populations usually suffer from low yields; it is therefore desirable to improve their agronomic performance while maintaining their valuable diversity levels. With this objective, a long-term participatory breeding/on-farm conservation program was established in Portugal. In this program, maize populations were subject to stratified mass selection. This work aimed to estimate the effect of on-farm stratified mass selection on the agronomic performance, quality, and molecular diversity of two historical maize populations. Multilocation field trials, comparing the initial populations with the derived selection cycles, showed that this selection methodology led to agronomic improvement for one of the populations. The molecular diversity analysis, using microsatellites, revealed that overall genetic diversity in both populations was maintained throughout selection. The comparison of quality parameters between the initial populations and the derived selection cycles was made using kernel from a common-garden experiment. This analysis showed that the majority of the quality traits evaluated progressed erratically over time. In conclusion, this breeding approach, through simple and low-cost methodologies, proved to be an alternative strategy for genetic resources' on-farm conservation.

Study of nitrate leaching and nitrogen fate under intensive vegetable production pattern in northern China.

PubMed

Song, Xiao-Zong; Zhao, Chang-Xing; Wang, Xiao-Lan; Li, Ji

2009-04-01

Because of intensive vegetable production in plastic greenhouses in northern China, the potential risk of nitrate leaching to groundwater is increasingly apparent, threatening ecosystem services and the sustainability of food production. In the present work, nine drainable lysimeters were installed into vegetable fields, with in-situ loamy soils, in Shouguang City of the north China vegetable base. The experiments were conducted to quantify the magnitude and variability of nitrate leaching to groundwater and to access the fate of total fertilizer-N inputs in the area. The results obtained indicated that: under local conventional agronomic practices, there is a high discrepancy in leaching nitrate-N concentration (ranging from 17 to 457 mg L(-1)), and nitrate losses (152-347 kg N ha(-1)) were observed from 1-m soil profiles in the field. Meanwhile, high fertilizer N application resulted in low N efficiency, with only (33.0+/-13)% (mean+/-S.D.) of input N absorbed by the crops, while additionally nearly half of the total inputs of N were unaccounted in a partial N balance sheet. It is concluded that groundwater pollution associated with greenhouse-based vegetable production had been confirmed in Shouguang, adversely affecting water quality and leading to serial agro-ecological problems.

Genetic diversity of root system architecture in response to drought stress in grain legumes.

PubMed

Ye, Heng; Roorkiwal, Manish; Valliyodan, Babu; Zhou, Lijuan; Chen, Pengyin; Varshney, Rajeev K; Nguyen, Henry T

2018-06-06

Climate change has increased the occurrence of extreme weather patterns globally, causing significant reductions in crop production, and hence threatening food security. In order to meet the food demand of the growing world population, a faster rate of genetic gains leading to productivity enhancement for major crops is required. Grain legumes are an essential commodity in optimal human diets and animal feed because of their unique nutritional composition. Currently, limited water is a major constraint in grain legume production. Root system architecture (RSA) is an important developmental and agronomic trait, which plays vital roles in plant adaptation and productivity under water-limited environments. A deep and proliferative root system helps extract sufficient water and nutrients under these stress conditions. The integrated genetics and genomics approach to dissect molecular processes from genome to phenome is key to achieve increased water capture and use efficiency through developing better root systems. Success in crop improvement under drought depends on discovery and utilization of genetic variations existing in the germplasm. In this review, we summarize current progress in the genetic diversity in major legume crops, quantitative trait loci (QTLs) associated with RSA, and the importance and applications of recent discoveries associated with the beneficial root traits towards better RSA for enhanced drought tolerance and yield.

Enhanced disease resistance and drought tolerance in transgenic rice plants overexpressing protein elicitors from Magnaporthe oryzae.

PubMed

Wang, Zhenzhen; Han, Qiang; Zi, Qian; Lv, Shun; Qiu, Dewen; Zeng, Hongmei

2017-01-01

Exogenous application of the protein elicitors MoHrip1 and MoHrip2, which were isolated from the pathogenic fungus Magnaporthe oryzae (M. oryzae), was previously shown to induce a hypersensitive response in tobacco and to enhance resistance to rice blast. In this work, we successfully transformed rice with the mohrip1 and mohrip2 genes separately. The MoHrip1 and MoHrip2 transgenic rice plants displayed higher resistance to rice blast and stronger tolerance to drought stress than wild-type (WT) rice and the vector-control pCXUN rice. The expression of salicylic acid (SA)- and abscisic acid (ABA)-related genes was also increased, suggesting that these two elicitors may trigger SA signaling to protect the rice from damage during pathogen infection and regulate the ABA content to increase drought tolerance in transgenic rice. Trypan blue staining indicated that expressing MoHrip1 and MoHrip2 in rice plants inhibited hyphal growth of the rice blast fungus. Relative water content (RWC), water usage efficiency (WUE) and water loss rate (WLR) were measured to confirm the high capacity for water retention in transgenic rice. The MoHrip1 and MoHrip2 transgenic rice also exhibited enhanced agronomic traits such as increased plant height and tiller number.

Long-term Effect of Pig Slurry Application on Soil Carbon Storage, Quality and Yield Sustainability in Murcia Region, Spain

NASA Astrophysics Data System (ADS)

Büyükkılıç Yanardaǧ, Asuman

2013-04-01

Sustainability of agriculture is now a major global concern, especially since the 1980s. Soil organic matter is very important in the proper functions of the soil, which is also a good indicator of soil quality. This is due to its influence on many of the chemical, physical, and biological processes that control the capacity of a soil to perform properly. Understanding of nutrient supply through organic matter mineralization in agricultural systems is essential for maintaining long-term quality and productivity. The composition of pig manure will have a profound impact on soil properties, quality and crop yield when used in agriculture. We studied the effects of pig slurry (PS) application as an organic fertilizer, trying to determine the optimum amount that can be added to the soil, and the effect on soil properties, quality, and productivity. We applied 3 different doses on silty loam soils: Single (D1), Double (D2), Triple (D3) and unfertilized plots (C) served as controls. Samples were collected at two different levels, surface (0-30 cm) and subsurface (30-60 cm). D1 application dose, which is the agronomic rate of N-requirement (170 kg N/ha/yr) (European Directive 91/676/CEE), is very appropriate in term of sustainable agriculture and also can improve physical, chemical and biological soil properties. Therefore that the long-term use of PS with low dose may necessarily enhance soil quality in the long term. There are many factors to be considered when attempting to assess the overall net impact of a management practice on productivity. Additions of pig manure to soils at agronomic rates (170 kg N ha-1 yr-1) to match crop nutrient requirements are expected to have a positive impact on soil productivity. Therefore, the benefits from the use of application depend on the management of PS, carbon and environmental quality. However, PS have high micronutrient contents, and for this reason the application of high doses can pollute soils and damage human, animal and plant health, which is not suitable in term of sustainable agriculture. Keywords: Management, Pig slurry, Productivity, Quality, Soil.

Agronomic and environmental implications of enhanced s-triazine degradation

USGS Publications Warehouse

Krutz, L. J.; Dale L. Shaner,; Mark A. Weaver,; Webb, Richard M.; Zablotowicz, Robert M.; Reddy, Krishna N.; Huang, Y.; Thompson, S. J.

2010-01-01

Novel catabolic pathways enabling rapid detoxification of s-triazine herbicides have been elucidated and detected at a growing number of locations. The genes responsible for s-triazine mineralization, i.e. atzABCDEF and trzNDF, occur in at least four bacterial phyla and are implicated in the development of enhanced degradation in agricultural soils from all continents except Antarctica. Enhanced degradation occurs in at least nine crops and six crop rotation systems that rely on s-triazine herbicides for weed control, and, with the exception of acidic soil conditions and s-triazine application frequency, adaptation of the microbial population is independent of soil physiochemical properties and cultural management practices. From an agronomic perspective, residual weed control could be reduced tenfold in s-triazine-adapted relative to non-adapted soils. From an environmental standpoint, the off-site loss of total s-triazine residues could be overestimated 13-fold in adapted soils if altered persistence estimates and metabolic pathways are not reflected in fate and transport models. Empirical models requiring soil pH and s-triazine use history as input parameters predict atrazine persistence more accurately than historical estimates, thereby allowing practitioners to adjust weed control strategies and model input values when warranted. 

Quantitative trait loci (QTLs) for water use and crop production traits co-locate with major QTL for tolerance to water deficit in a fine-mapping population of pearl millet (Pennisetum glaucum L. R.Br.).

PubMed

Tharanya, Murugesan; Kholova, Jana; Sivasakthi, Kaliamoorthy; Seghal, Deepmala; Hash, Charles Tom; Raj, Basker; Srivastava, Rakesh Kumar; Baddam, Rekha; Thirunalasundari, Thiyagarajan; Yadav, Rattan; Vadez, Vincent

2018-04-21

Four genetic regions associated with water use traits, measured at different levels of plant organization, and with agronomic traits were identified within a previously reported region for terminal water deficit adaptation on linkage group 2. Close linkages between these traits showed the value of phenotyping both for agronomic and secondary traits to better understand plant productive processes. Water saving traits are critical for water stress adaptation of pearl millet, whereas maximizing water use is key to the absence of stress. This research aimed at demonstrating the close relationship between traits measured at different levels of plant organization, some putatively involved in water stress adaptation, and those responsible for agronomic performance. A fine-mapping population of pearl millet, segregating for a previously identified quantitative trait locus (QTL) for adaptation to terminal drought stress on LG02, was phenotyped for traits at different levels of plant organization in different experimental environments (pot culture, high-throughput phenotyping platform, lysimeters, and field). The linkages among traits across the experimental systems were analysed using principal component analysis and QTL co-localization approach. Four regions within the LG02-QTL were found and revealed substantial co-mapping of water use and agronomic traits. These regions, identified across experimental systems, provided genetic evidence of the tight linkages between traits phenotyped at a lower level of plant organization and agronomic traits assessed in the field, therefore deepening our understanding of complex traits and then benefiting both geneticists and breeders. In short: (1) under no/mild stress conditions, increasing biomass and tiller production increased water use and eventually yield; (2) under severe stress conditions, water savings at vegetative stage, from lower plant vigour and fewer tillers in that population, led to more water available during grain filling, expression of stay-green phenotypes, and higher yield.

Quantitative genetic analysis of agronomic and morphological traits in sorghum, Sorghum bicolor

PubMed Central

Mohammed, Riyazaddin; Are, Ashok K.; Bhavanasi, Ramaiah; Munghate, Rajendra S.; Kavi Kishor, Polavarapu B.; Sharma, Hari C.

2015-01-01

The productivity in sorghum is low, owing to various biotic and abiotic constraints. Combining insect resistance with desirable agronomic and morphological traits is important to increase sorghum productivity. Therefore, it is important to understand the variability for various agronomic traits, their heritabilities and nature of gene action to develop appropriate strategies for crop improvement. Therefore, a full diallel set of 10 parents and their 90 crosses including reciprocals were evaluated in replicated trials during the 2013–14 rainy and postrainy seasons. The crosses between the parents with early- and late-flowering flowered early, indicating dominance of earliness for anthesis in the test material used. Association between the shoot fly resistance, morphological, and agronomic traits suggested complex interactions between shoot fly resistance and morphological traits. Significance of the mean sum of squares for GCA (general combining ability) and SCA (specific combining ability) of all the studied traits suggested the importance of both additive and non-additive components in inheritance of these traits. The GCA/SCA, and the predictability ratios indicated predominance of additive gene effects for majority of the traits studied. High broad-sense and narrow-sense heritability estimates were observed for most of the morphological and agronomic traits. The significance of reciprocal combining ability effects for days to 50% flowering, plant height and 100 seed weight, suggested maternal effects for inheritance of these traits. Plant height and grain yield across seasons, days to 50% flowering, inflorescence exsertion, and panicle shape in the postrainy season showed greater specific combining ability variance, indicating the predominance of non-additive type of gene action/epistatic interactions in controlling the expression of these traits. Additive gene action in the rainy season, and dominance in the postrainy season for days to 50% flowering and plant height suggested G X E interactions for these traits. PMID:26579183

Tracing QTLs for Leaf Blast Resistance and Agronomic Performance of Finger Millet (Eleusine coracana (L.) Gaertn.) Genotypes through Association Mapping and in silico Comparative Genomics Analyses.

PubMed

Ramakrishnan, M; Antony Ceasar, S; Duraipandiyan, V; Vinod, K K; Kalpana, Krishnan; Al-Dhabi, N A; Ignacimuthu, S

2016-01-01

Finger millet is one of the small millets with high nutritive value. This crop is vulnerable to blast disease caused by Pyricularia grisea, which occurs annually during rainy and winter seasons. Leaf blast occurs at early crop stage and is highly damaging. Mapping of resistance genes and other quantitative trait loci (QTLs) for agronomic performance can be of great use for improving finger millet genotypes. Evaluation of one hundred and twenty-eight finger millet genotypes in natural field conditions revealed that leaf blast caused severe setback on agronomic performance for susceptible genotypes, most significant traits being plant height and root length. Plant height was reduced under disease severity while root length was increased. Among the genotypes, IE4795 showed superior response in terms of both disease resistance and better agronomic performance. A total of seven unambiguous QTLs were found to be associated with various agronomic traits including leaf blast resistance by association mapping analysis. The markers, UGEP101 and UGEP95, were strongly associated with blast resistance. UGEP98 was associated with tiller number and UGEP9 was associated with root length and seed yield. Cross species validation of markers revealed that 12 candidate genes were associated with 8 QTLs in the genomes of grass species such as rice, foxtail millet, maize, Brachypodium stacei, B. distachyon, Panicum hallii and switchgrass. Several candidate genes were found proximal to orthologous sequences of the identified QTLs such as 1,4-β-glucanase for leaf blast resistance, cytokinin dehydrogenase (CKX) for tiller production, calmodulin (CaM) binding protein for seed yield and pectin methylesterase inhibitor (PMEI) for root growth and development. Most of these QTLs and their putatively associated candidate genes are reported for first time in finger millet. On validation, these novel QTLs may be utilized in future for marker assisted breeding for the development of fungal resistant and high yielding varieties of finger millet.

Tracing QTLs for Leaf Blast Resistance and Agronomic Performance of Finger Millet (Eleusine coracana (L.) Gaertn.) Genotypes through Association Mapping and in silico Comparative Genomics Analyses

PubMed Central

Ramakrishnan, M.; Antony Ceasar, S.; Duraipandiyan, V.; Vinod, K. K.; Kalpana, Krishnan; Al-Dhabi, N. A.; Ignacimuthu, S.

2016-01-01

Finger millet is one of the small millets with high nutritive value. This crop is vulnerable to blast disease caused by Pyricularia grisea, which occurs annually during rainy and winter seasons. Leaf blast occurs at early crop stage and is highly damaging. Mapping of resistance genes and other quantitative trait loci (QTLs) for agronomic performance can be of great use for improving finger millet genotypes. Evaluation of one hundred and twenty-eight finger millet genotypes in natural field conditions revealed that leaf blast caused severe setback on agronomic performance for susceptible genotypes, most significant traits being plant height and root length. Plant height was reduced under disease severity while root length was increased. Among the genotypes, IE4795 showed superior response in terms of both disease resistance and better agronomic performance. A total of seven unambiguous QTLs were found to be associated with various agronomic traits including leaf blast resistance by association mapping analysis. The markers, UGEP101 and UGEP95, were strongly associated with blast resistance. UGEP98 was associated with tiller number and UGEP9 was associated with root length and seed yield. Cross species validation of markers revealed that 12 candidate genes were associated with 8 QTLs in the genomes of grass species such as rice, foxtail millet, maize, Brachypodium stacei, B. distachyon, Panicum hallii and switchgrass. Several candidate genes were found proximal to orthologous sequences of the identified QTLs such as 1,4-β-glucanase for leaf blast resistance, cytokinin dehydrogenase (CKX) for tiller production, calmodulin (CaM) binding protein for seed yield and pectin methylesterase inhibitor (PMEI) for root growth and development. Most of these QTLs and their putatively associated candidate genes are reported for first time in finger millet. On validation, these novel QTLs may be utilized in future for marker assisted breeding for the development of fungal resistant and high yielding varieties of finger millet. PMID:27415007

Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs.

PubMed

Huang, Cong; Nie, Xinhui; Shen, Chao; You, Chunyuan; Li, Wu; Zhao, Wenxia; Zhang, Xianlong; Lin, Zhongxu

2017-11-01

Gossypium hirsutum L. represents the largest source of textile fibre, and China is one of the largest cotton-producing and cotton-consuming countries in the world. To investigate the genetic architecture of the agronomic traits of upland cotton in China, a diverse and nationwide population containing 503 G. hirsutum accessions was collected for a genome-wide association study (GWAS) on 16 agronomic traits. The accessions were planted in four places from 2012 to 2013 for phenotyping. The CottonSNP63K array and a published high-density map based on this array were used for genotyping. The 503 G. hirsutum accessions were divided into three subpopulations based on 11 975 quantified polymorphic single-nucleotide polymorphisms (SNPs). By comparing the genetic structure and phenotypic variation among three genetic subpopulations, seven geographic distributions and four breeding periods, we found that geographic distribution and breeding period were not the determinants of genetic structure. In addition, no obvious phenotypic differentiations were found among the three subpopulations, even though they had different genetic backgrounds. A total of 324 SNPs and 160 candidate quantitative trait loci (QTL) regions were identified as significantly associated with the 16 agronomic traits. A network was established for multieffects in QTLs and interassociations among traits. Thirty-eight associated regions had pleiotropic effects controlling more than one trait. One candidate gene, Gh_D08G2376, was speculated to control the lint percentage (LP). This GWAS is the first report using high-resolution SNPs in upland cotton in China to comprehensively investigate agronomic traits, and it provides a fundamental resource for cotton genetic research and breeding. © 2017 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

Prediction of industrial tomato hybrids from agronomic traits and ISSR molecular markers.

PubMed

Figueiredo, A S T; Resende, J T V; Faria, M V; Da-Silva, P R; Fagundes, B S; Morales, R G F

2016-05-13

Heterosis is a highly relevant phenomenon in plant breeding. This condition is usually established in hybrids derived from crosses of highly divergent parents. The success of a breeder in obtaining heterosis is directly related to the correct identification of genetically contrasting parents. Currently, the diallel cross is the most commonly used methodology to detect contrasting parents; however, it is a time- and cost-consuming procedure. Therefore, new tools capable of performing this task quickly and accurately are required. Thus, the purpose of this study was to estimate the genetic divergence in industrial tomato lines, based on agronomic traits, and to compare with estimates obtained using inter-simple sequence repeat (ISSR) molecular markers. The genetic divergence among 10 industrial tomato lines, based on nine morphological characters and 12 ISSR primers was analyzed. For data analysis, Pearson and Spearman correlation coefficients were calculated between the genetic dissimilarity measures estimated by Mahalanobis distance and Jaccard's coefficient of genetic dissimilarity from the heterosis estimates, combining ability, and means of important traits of industrial tomato. The ISSR markers efficiently detected contrasting parents for hybrid production in tomato. Parent RVTD-08 was indicated as the most divergent, both by molecular and morphological markers, that positively contributed to increased heterosis and by the specific combining ability in the crosses in which it participated. The genetic dissimilarity estimated by ISSR molecular markers aided the identification of the best hybrids of the experiment in terms of total fruit yield, pulp yield, and soluble solids content.

Implementation of Quality Assurance Systems at E.T.S. Ingenieros Agrónomos of Madrid in the Framework of E.H.E.

NASA Astrophysics Data System (ADS)

Arce, A.; Tarquis, A. M.; Cartagena, M. C.

2012-04-01

The Bologna Process is to improve the quality of education, mobility, diversity and the competitiveness and involves three fundamental changes: transform of the structure of titles, changing in methods of teaching and implementation of the systems of quality assurance. Once that titles structure given by the E.T.S. Agronomic Engineer (ETSIA) have been defined, and introduced new methods of learning, this work has focused in the third point: implementation of quality assurance systems as well as the new three titles planning that begins to impart at ETSIA, Madrid, during 2010-2011 course. The academic year 2010-2011 was the first year of implementation of the Bologna Process, this paper attempts to compare the academic results obtained by students in the three new degrees in the subject of Chemistry I and II compared with the results obtained in the same subject in the degree of Agronomic Engineer in the past four years. The academic results have been lower than expected and worse than in previous courses. The paper tries to account for these results based on the percentage of compliance with the guidance of teachers, and based on student participation and training prior to beginning the course. Finally, propose possible solutions to try to correct these results in future courses, with the aim of improving efficiency rates, success and absenteeism important in the first year since it will condition the dropout rate of these new degrees.

Association Study Reveals Novel Genes Related to Yield and Quality of Fruit in Cape Gooseberry (Physalis peruviana L.).

PubMed

García-Arias, Francy L; Osorio-Guarín, Jaime A; Núñez Zarantes, Victor M

2018-01-01

Association mapping has been proposed as an efficient approach to assist plant breeding programs to investigate the genetic basis of agronomic traits. In this study, we evaluated 18 traits related to yield, (FWP, NF, FWI, and FWII), fruit size-shape (FP, FA, MW, WMH, MH, HMW, DI, FSI, FSII, OVO, OBO), and fruit quality (FIR, CF, and SST), in a diverse collection of 100 accessions of Physalis peruviana including wild, landraces, and anther culture derived lines. We identified seven accessions with suitable traits: fruit weight per plant (FWP) > 7,000 g/plant and cracked fruits (CF) < 4%, to be used as parents in cape gooseberry breeding program. In addition, the accessions were also characterized using Genotyping By Sequencing (GBS). We discovered 27,982 and 36,142 informative SNP markers based on the alignment against the two cape gooseberry references transcriptomes. Besides, 30,344 SNPs were identified based on alignment to the tomato reference genome. Genetic structure analysis showed that the population could be divided into two or three sub-groups, corresponding to landraces-anther culture and wild accessions for K = 2 and wild, landraces, and anther culture plants for K = 3. Association analysis was carried out using a Mixed Linear Model (MLM) and 34 SNP markers were significantly associated. These results reveal the basis of the genetic control of important agronomic traits and may facilitate marker-based breeding in P. peruviana .

Association Study Reveals Novel Genes Related to Yield and Quality of Fruit in Cape Gooseberry (Physalis peruviana L.)

PubMed Central

García-Arias, Francy L.; Osorio-Guarín, Jaime A.; Núñez Zarantes, Victor M.

2018-01-01

Association mapping has been proposed as an efficient approach to assist plant breeding programs to investigate the genetic basis of agronomic traits. In this study, we evaluated 18 traits related to yield, (FWP, NF, FWI, and FWII), fruit size-shape (FP, FA, MW, WMH, MH, HMW, DI, FSI, FSII, OVO, OBO), and fruit quality (FIR, CF, and SST), in a diverse collection of 100 accessions of Physalis peruviana including wild, landraces, and anther culture derived lines. We identified seven accessions with suitable traits: fruit weight per plant (FWP) > 7,000 g/plant and cracked fruits (CF) < 4%, to be used as parents in cape gooseberry breeding program. In addition, the accessions were also characterized using Genotyping By Sequencing (GBS). We discovered 27,982 and 36,142 informative SNP markers based on the alignment against the two cape gooseberry references transcriptomes. Besides, 30,344 SNPs were identified based on alignment to the tomato reference genome. Genetic structure analysis showed that the population could be divided into two or three sub-groups, corresponding to landraces-anther culture and wild accessions for K = 2 and wild, landraces, and anther culture plants for K = 3. Association analysis was carried out using a Mixed Linear Model (MLM) and 34 SNP markers were significantly associated. These results reveal the basis of the genetic control of important agronomic traits and may facilitate marker-based breeding in P. peruviana. PMID:29616069

Contrasting agronomic response of biochar amendment to a Mediterranean Cambisol: Incubation vs. field experiment

NASA Astrophysics Data System (ADS)

De la Rosa, José M.; Paneque, Marina; De Celis, Reyes; Miller, Ana Z.; Knicker, Heike

2015-04-01

The application of biochar to soil is being proposed as a novel approach to establish a significant long-term sink for atmospheric carbon dioxide in terrestrial ecosystems. In addition, biochars offer a simple, sustainable tool for managing organic wastes and to produce added value products. Numerous research studies pointed out that biochar can act as a soil conditioner enhancing plant growth by supplying and, more importantly, retaining nutrients and by providing other services such as improving soil physical and biological properties [1]. However, the effectiveness of biochar in enhancing plant fertility is a function of soil type, climate, and type of crop [2] but also of the biochar properties. The inherent variability of biochars due to different feedstock and production conditions implies a high variability of their effect on soil properties and productivity. Furthermore, due to the irreversibility of biochar application, it is necessary to perform detailed studies to achieve a high level of certainty that adding biochar to agricultural soils, for whatever reason, will not negatively affect soil health and productivity. The major goals of this research were: i) understanding how the properties of 5 different biochars produced by using different feedstock and pyrolysis conditions are related to their agronomic response, and ii) assessing the agronomic effect of biochar amendment under field conditions of a typical Mediterranean non-irrigated plantation. Four of the used biochars were produced by pyrolysis from wood (2), paper sludge (1) and sewage sludge (1), at temperatures up to 620 °C. The fifth biochar was produced from old grapevine wood by applying the traditional kiln method. Biochars were analysed for elemental composition (C, H, N), pH, WHC and ash contents. The H/C and O/C atomic ratios suggested high aromaticity of all biochars, which was confirmed by 13C solid-state NMR spectroscopy. The FT-IR spectra indicated the presence of lignin residues in wood biochars. The FESEM-EDS distinguished compositional and structural differences of the studied biochars such as macropores on the surface of pyrolysis wood biochars. In the frame of a pot experiment, the biochar characteristics (physical properties and chemical composition) were related to the germination rates and to the plant biomass production of a Lolium perenne. Incubation was carried out in 300 mL pots during 79 days in which a calcic Cambisol [3] was amended with 10, 20 and 40 t ha-1 biochar. After adjusting the soil humidity to 60% of the maximum water holding capacity (WHC), the pots were placed into a greenhouse under similar conditions than those reported by [4]. Biochar amendment improved significantly germination rates and soil fertility (excepting kiln wood biochar), and had no negative pH impact on the already alkaline soil. Application of sewage sludge biochar, the richest in minerals and nitrogen, resulted in the highest soil fertility. In this case, increase of the dose went along with an enhancement of plant production. Considering further costs due to production and transport of biochar, the application of 10 t ha-1 turned out as the most efficient for the crop and soil used in the incubation experiment [further details in 5]. The field study was performed with seeds of Helianthus annuus, at the experimental station "La Hampa", located in the Guadalquivir river valley (SW Spain; 37° 21.32' N, 6° 4.07' W), Seville. The calcic Cambisol which was also used as matrix for the pot experiments was amended with doses equivalent to 0 (control), 1.5 and 15 t ha-1 of the five biochars, making a total of 12 different treatments. Soil properties and composition were monitored during the growing time including elemental composition, pH, water holding capacity and soil microbial biomass. After 6 months of growth, sunflower plants were harvested. Plant height, chlorophyll content and sunflower seeds production were recorded. Results of this field experiment are still being processed. Nevertheless, preliminary results indicated that addition of biochar did not alter negatively physical properties (pH, EC) or composition of this alkaline soil, on the contrary biochar addition caused a slight improvement of the WHC and soil porosity. Those changes produced a faster development of plant shoots. However, at the end of the experiment, biochar amendment caused no significant increase on the agronomic production for any of the tested biochars. From these preliminary results, we conclude that biochar amendment improved physical-surficial characteristics of the calcic Cambisol from an agronomic point of view, but under the typical Mediterranean climate those changes seem to leave the harvested seed yields unaffected. References: [1] Glaser B, Lehmann J, Zech W, 2002. Biol. Fert. Soils. 35, 219-230. [2] Blackwell P, Riethmuller G, Collins M, 2009. in Lehmann J, Joseph S. Earthscan (Eds.), Biochar for Environmental Management: Science and Technology, London. [3] IUSS Working Group WRB, 2007. World Soil Resources Reports 103. FAO, Rome. [4] De la Rosa JM, Knicker H, 2011. Soil Biol. Biochem. 43, 2368-2373. [5] De la Rosa JM, Paneque M, Miller AZ, Knicker H, 2014. Sci. of the Tot. Env. 499, 175-184. Acknowledgements: The Marie Skłodowska-Curie actions (REA grant agreement n° PCIG12-GA-2012-333784-Biocharisma project) and the Spanish Ministry of Economy and Competitiveness (MINECO) (project PCGL2012-37041) are thanked for the financial support of the present study. The "Fondo Social Europeo" is thanked for funding J.M de la Rosa JAE-Doc contract. The European Biochar Network (Biochar as option for sustainable resource management-COST action TD1107) and Bodegas Torres (Spain) are acknowledged for providing the biochar samples.

Soil and agronomic factors associated with cadmium accumulations in kidneys of grazing sheep.

PubMed

Morcombe, P W; Petterson, D S; Ross, P J; Edwards, J R

1994-12-01

Mean concentration of cadmium (Cd) in kidneys of hogget sheep from 67 flocks grazing in the Agricultural Region of Western Australia was tested for association with soil, pastoral, climatic and nutritional factors. Hoggets grazing pastures on acidic soils and soils with a sandy-textured surface had higher Cd concentrations in kidneys than hoggets grazing pastures on more alkaline soils or soils with a clay-textured surface. Application of more than 100 kg of phosphatic fertiliser during the past 3 years to loamy soils was also associated with greater Cd concentration in kidneys of the grazing animals.

Heavy Metal Uptake by C. esculentus, S. alterniflora and Agronomic Plants from Contaminated Soils and Sediments.

DTIC Science & Technology

1982-02-28

in March and potted in April. Seed sowing will ta..-e place in mid-May. The species sown will include a grass. wheat, lettuce and radish and C... effects varied. Soe started negativeLy, and became positive; others remained negative ( radish ), and others were positive aLl the time (wheat). ALL...agronomic plants selected were radish (Webb’s French Break- fast), lettuce (Paris White), wheat (spring), red fescue (Merlin) and ryegrass (S24). Each

Beyond the plot: technology extrapolation domains for scaling out agronomic science

NASA Astrophysics Data System (ADS)

Rattalino Edreira, Juan I.; Cassman, Kenneth G.; Hochman, Zvi; van Ittersum, Martin K.; van Bussel, Lenny; Claessens, Lieven; Grassini, Patricio

2018-05-01

Ensuring an adequate food supply in systems that protect environmental quality and conserve natural resources requires productive and resource-efficient cropping systems on existing farmland. Meeting this challenge will be difficult without a robust spatial framework that facilitates rapid evaluation and scaling-out of currently available and emerging technologies. Here we develop a global spatial framework to delineate ‘technology extrapolation domains’ based on key climate and soil factors that govern crop yields and yield stability in rainfed crop production. The proposed framework adequately represents the spatial pattern of crop yields and stability when evaluated over the data-rich US Corn Belt. It also facilitates evaluation of cropping system performance across continents, which can improve efficiency of agricultural research that seeks to intensify production on existing farmland. Populating this biophysical spatial framework with appropriate socio-economic attributes provides the potential to amplify the return on investments in agricultural research and development by improving the effectiveness of research prioritization and impact assessment.

Optimization of pretreatment, enzymatic hydrolysis and fermentation for more efficient ethanol production by Jerusalem artichoke stalk.

PubMed

Li, Kai; Qin, Jin-Cheng; Liu, Chen-Guang; Bai, Feng-Wu

2016-12-01

Jerusalem artichoke (JA) is a potential energy crop for biorefinery due to its unique agronomic traits such as resistance to environmental stresses and high biomass yield in marginal lands. Although JA tubers have been explored for inulin extraction and biofuels production, there is little concern on its stalk (JAS). In this article, the pretreatment of JAS by alkaline hydrogen peroxide was optimized using the response surface methodology to improve sugars yield and reduce chemicals usage. Scanning electron microscopy, X-ray diffraction, and thermogravimetric analysis were applied to characterize the structures of the pretreated JAS to evaluate the effectiveness of the pretreatment. Furthermore, the feeding of the pretreated JAS and cellulase was performed for high solid uploading (up to 30%) to increase ethanol titer, and simultaneous saccharification and fermentation with 55.6g/L ethanol produced, 36.5% more than that produced through separate hydrolysis and fermentation, was validated to be more efficient. Copyright © 2016 Elsevier Ltd. All rights reserved.

AMP: Assembly Matching Pursuit.

PubMed

Biswas, S; Jojic, V

2013-01-01

Metagenomics, the study of the total genetic material isolated from a biological host, promises to reveal host-microbe or microbe-microbe interactions that may help to personalize medicine or improve agronomic practice. We introduce a method that discovers metagenomic units (MGUs) relevant for phenotype prediction through sequence-based dictionary learning. The method aggregates patient-specific dictionaries and estimates MGU abundances in order to summarize a whole population and yield universally predictive biomarkers. We analyze the impact of Gaussian, Poisson, and Negative Binomial read count models in guiding dictionary construction by examining classification efficiency on a number of synthetic datasets and a real dataset from Ref. 1. Each outperforms standard methods of dictionary composition, such as random projection and orthogonal matching pursuit. Additionally, the predictive MGUs they recover are biologically relevant.

Rice, Japonica (Oryza sativa L.).

PubMed

Main, Marcy; Frame, Bronwyn; Wang, Kan

2015-01-01

The importance of rice, as a food crop, is reflected in the extensive global research being conducted in an effort to improve and better understand this particular agronomic plant. In regard to biotechnology, this has led to the development of numerous genetic transformation protocols. Over the years, many of these methods have become increasingly straightforward, rapid, and efficient, thereby making rice valuable as a model crop for scientific research and functional genomics. The focus of this chapter is on one such protocol that uses Agrobacterium-mediated transformation of Oryza sativa L. ssp. Japonica cv. Nipponbare with an emphasis on tissue desiccation. The explants consist of callus derived from mature seeds which are cocultivated on filter paper postinfection. Hygromycin selection is used for the recovery of subsequent genetically engineered events.

Effect of agronomical practices on carpology, fruit and oil composition, and oil sensory properties, in olive (Olea europaea L.).

PubMed

Rosati, Adolfo; Cafiero, Caterina; Paoletti, Andrea; Alfei, Barbara; Caporali, Silvia; Casciani, Lorena; Valentini, Massimiliano

2014-09-15

We examined whether some agronomical practices (i.e. organic vs. conventional) affect olive fruit and oil composition, and oil sensory properties. Fruit characteristics (i.e. fresh and dry weight of pulp and pit, oil content on a fresh and dry weight basis) did not differ. Oil chemical traits did not differ except for increased content of polyphenols in the organic treatments, and some changes in the acidic composition. Sensory analysis revealed increased bitterness (both cultivars) and pungency (Frantoio) and decreased sweetness (Frantoio) in the organic treatment. Fruit metabolomic analysis with HRMAS-NMR indicated significant changes in some compounds including glycocholate, fatty acids, NADPH, NADP+, some amino acids, thymidine, trigonelline, nicotinic acid, 5,6-dihydrouracil, hesanal, cis-olefin, β-D-glucose, propanal and some unassigned species. The results suggest that agronomical practices may have effects on fruit composition that may be difficult to detect unless a broad-spectrum analysis is used. Copyright © 2014 Elsevier Ltd. All rights reserved.

Identification of QTLs for 14 Agronomically Important Traits in Setaria italica Based on SNPs Generated from High-Throughput Sequencing

PubMed Central

Zhang, Kai; Fan, Guangyu; Zhang, Xinxin; Zhao, Fang; Wei, Wei; Du, Guohua; Feng, Xiaolei; Wang, Xiaoming; Wang, Feng; Song, Guoliang; Zou, Hongfeng; Zhang, Xiaolei; Li, Shuangdong; Ni, Xuemei; Zhang, Gengyun; Zhao, Zhihai

2017-01-01

Foxtail millet (Setaria italica) is an important crop possessing C4 photosynthesis capability. The S. italica genome was de novo sequenced in 2012, but the sequence lacked high-density genetic maps with agronomic and yield trait linkages. In the present study, we resequenced a foxtail millet population of 439 recombinant inbred lines (RILs) and developed high-resolution bin map and high-density SNP markers, which could provide an effective approach for gene identification. A total of 59 QTL for 14 agronomic traits in plants grown under long- and short-day photoperiods were identified. The phenotypic variation explained ranged from 4.9 to 43.94%. In addition, we suggested that there may be segregation distortion on chromosome 6 that is significantly distorted toward Zhang gu. The newly identified QTL will provide a platform for sequence-based research on the S. italica genome, and for molecular marker-assisted breeding. PMID:28364039

Identification of QTLs for 14 Agronomically Important Traits in Setaria italica Based on SNPs Generated from High-Throughput Sequencing.

PubMed

Zhang, Kai; Fan, Guangyu; Zhang, Xinxin; Zhao, Fang; Wei, Wei; Du, Guohua; Feng, Xiaolei; Wang, Xiaoming; Wang, Feng; Song, Guoliang; Zou, Hongfeng; Zhang, Xiaolei; Li, Shuangdong; Ni, Xuemei; Zhang, Gengyun; Zhao, Zhihai

2017-05-05

Foxtail millet ( Setaria italica ) is an important crop possessing C4 photosynthesis capability. The S. italica genome was de novo sequenced in 2012, but the sequence lacked high-density genetic maps with agronomic and yield trait linkages. In the present study, we resequenced a foxtail millet population of 439 recombinant inbred lines (RILs) and developed high-resolution bin map and high-density SNP markers, which could provide an effective approach for gene identification. A total of 59 QTL for 14 agronomic traits in plants grown under long- and short-day photoperiods were identified. The phenotypic variation explained ranged from 4.9 to 43.94%. In addition, we suggested that there may be segregation distortion on chromosome 6 that is significantly distorted toward Zhang gu. The newly identified QTL will provide a platform for sequence-based research on the S. italica genome, and for molecular marker-assisted breeding. Copyright © 2017 Zhang et al.

Nanotechnology: A New Opportunity in Plant Sciences.

PubMed

Wang, Peng; Lombi, Enzo; Zhao, Fang-Jie; Kopittke, Peter M

2016-08-01

The agronomic application of nanotechnology in plants (phytonanotechnology) has the potential to alter conventional plant production systems, allowing for the controlled release of agrochemicals (e.g., fertilizers, pesticides, and herbicides) and target-specific delivery of biomolecules (e.g., nucleotides, proteins, and activators). An improved understanding of the interactions between nanoparticles (NPs) and plant responses, including their uptake, localization, and activity, could revolutionize crop production through increased disease resistance, nutrient utilization, and crop yield. Herewith, we review potential applications of phytonanotechnology and the key processes involved in the delivery of NPs to plants. To ensure both the safe use and social acceptance of phytonanotechnology, the adverse effects, including the risks associated with the transfer of NPs through the food chain, are discussed. Copyright © 2016 Elsevier Ltd. All rights reserved.

Isotope ratio mass spectrometry in combination with chemometrics for characterization of geographical origin and agronomic practices of table grape.

PubMed

Longobardi, Francesco; Casiello, Grazia; Centonze, Valentina; Catucci, Lucia; Agostiano, Angela

2017-08-01

Although table grape is one of the most cultivated and consumed fruits worldwide, no study has been reported on its geographical origin or agronomic practice based on stable isotope ratios. This study aimed to evaluate the usefulness of isotopic ratios (i.e. 2 H/ 1 H, 13 C/ 12 C, 15 N/ 14 N and 18 O/ 16 O) as possible markers to discriminate the agronomic practice (conventional versus organic farming) and provenance of table grape. In order to quantitatively evaluate which of the isotopic variables were more discriminating, a t test was carried out, in light of which only δ 13 C and δ 18 O provided statistically significant differences (P ≤ 0.05) for the discrimination of geographical origin and farming method. Principal component analysis (PCA) showed no good separation of samples differing in geographical area and agronomic practice; thus, for classification purposes, supervised approaches were carried out. In particular, general discriminant analysis (GDA) was used, resulting in prediction abilities of 75.0 and 92.2% for the discrimination of farming method and origin respectively. The present findings suggest that stable isotopes (i.e. δ 18 O, δ 2 H and δ 13 C) combined with chemometrics can be successfully applied to discriminate the provenance of table grape. However, the use of bulk nitrogen isotopes was not effective for farming method discrimination. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

In vivo Assembly in Escherichia coli of Transformation Vectors for Plastid Genome Engineering

PubMed Central

Wu, Yuyong; You, Lili; Li, Shengchun; Ma, Meiqi; Wu, Mengting; Ma, Lixin; Bock, Ralph; Chang, Ling; Zhang, Jiang

2017-01-01

Plastid transformation for the expression of recombinant proteins and entire metabolic pathways has become a promising tool for plant biotechnology. However, large-scale application of this technology has been hindered by some technical bottlenecks, including lack of routine transformation protocols for agronomically important crop plants like rice or maize. Currently, there are no standard or commercial plastid transformation vectors available for the scientific community. Construction of a plastid transformation vector usually requires tedious and time-consuming cloning steps. In this study, we describe the adoption of an in vivo Escherichia coli cloning (iVEC) technology to quickly assemble a plastid transformation vector. The method enables simple and seamless build-up of a complete plastid transformation vector from five DNA fragments in a single step. The vector assembled for demonstration purposes contains an enhanced green fluorescent protein (GFP) expression cassette, in which the gfp transgene is driven by the tobacco plastid ribosomal RNA operon promoter fused to the 5′ untranslated region (UTR) from gene10 of bacteriophage T7 and the transcript-stabilizing 3′UTR from the E. coli ribosomal RNA operon rrnB. Successful transformation of the tobacco plastid genome was verified by Southern blot analysis and seed assays. High-level expression of the GFP reporter in the transplastomic plants was visualized by confocal microscopy and Coomassie staining, and GFP accumulation was ~9% of the total soluble protein. The iVEC method represents a simple and efficient approach for construction of plastid transformation vector, and offers great potential for the assembly of increasingly complex vectors for synthetic biology applications in plastids. PMID:28871270

In vivo Assembly in Escherichia coli of Transformation Vectors for Plastid Genome Engineering.

PubMed

Wu, Yuyong; You, Lili; Li, Shengchun; Ma, Meiqi; Wu, Mengting; Ma, Lixin; Bock, Ralph; Chang, Ling; Zhang, Jiang

2017-01-01

Plastid transformation for the expression of recombinant proteins and entire metabolic pathways has become a promising tool for plant biotechnology. However, large-scale application of this technology has been hindered by some technical bottlenecks, including lack of routine transformation protocols for agronomically important crop plants like rice or maize. Currently, there are no standard or commercial plastid transformation vectors available for the scientific community. Construction of a plastid transformation vector usually requires tedious and time-consuming cloning steps. In this study, we describe the adoption of an in vivo Escherichia coli cloning (iVEC) technology to quickly assemble a plastid transformation vector. The method enables simple and seamless build-up of a complete plastid transformation vector from five DNA fragments in a single step. The vector assembled for demonstration purposes contains an enhanced green fluorescent protein (GFP) expression cassette, in which the gfp transgene is driven by the tobacco plastid ribosomal RNA operon promoter fused to the 5' untranslated region (UTR) from gene10 of bacteriophage T7 and the transcript-stabilizing 3'UTR from the E. coli ribosomal RNA operon rrnB . Successful transformation of the tobacco plastid genome was verified by Southern blot analysis and seed assays. High-level expression of the GFP reporter in the transplastomic plants was visualized by confocal microscopy and Coomassie staining, and GFP accumulation was ~9% of the total soluble protein. The iVEC method represents a simple and efficient approach for construction of plastid transformation vector, and offers great potential for the assembly of increasingly complex vectors for synthetic biology applications in plastids.

A coupled agronomic-economic model to consider allocation of brackish irrigation water

NASA Astrophysics Data System (ADS)

Ben-Gal, Alon; Weikard, Hans-Peter; Shah, Syed Hamid Hussain; van der Zee, Sjoerd E. A. T. M.

2013-05-01

In arid and semiarid regions, irrigation water is scarce and often contains high concentrations of salts. To reduce negative effects on crop yields, the irrigated amounts must include water for leaching and therefore exceed evapotranspiration. The leachate (drainage) water returns to water sources such as rivers or groundwater aquifers and increases their level of salinity and the leaching requirement for irrigation water of any sequential user. We develop a conceptual sequential (upstream-downstream) model of irrigation that predicts crop yields and water consumption and tracks the water flow and level of salinity along a river dependent on irrigation management decisions. The model incorporates an agro-physical model of plant response to environmental conditions including feedbacks. For a system with limited water resources, the model examines the impacts of water scarcity, salinity and technically inefficient application on yields for specific crop, soil, and climate conditions. Moving beyond the formulation of a conceptual frame, we apply the model to the irrigation of Capsicum annum on Arava Sandy Loam soil. We show for this case how water application could be distributed between upstream and downstream plots or farms. We identify those situations where it is beneficial to trade water from upstream to downstream farms (assuming that the upstream farm holds the water rights). We find that water trade will improve efficiency except when loss levels are low. We compute the marginal value of water, i.e., the price water would command on a market, for different levels of water scarcity, salinity and levels of water loss.

Biology and management of two important Conyza weeds: a global review.

PubMed

Bajwa, Ali Ahsan; Sadia, Sehrish; Ali, Hafiz Haider; Jabran, Khawar; Peerzada, Arslan Masood; Chauhan, Bhagirath Singh

2016-12-01

Weed management is one of the prime concerns for sustainable crop production. Conyza bonariensis and Conyza canadensis are two of the most problematic, noxious, invasive and widespread weeds in modern-day agriculture. The biology, ecology and interference of C. bonariensis and C. canadensis have been reviewed here to highlight pragmatic management options. Both these species share a unique set of biological features, which enables them to invade and adapt a wide range of environmental conditions. Distinct reproductive biology and an efficient seed dispersal mechanism help these species to spread rapidly. Ability to interfere strongly and to host crop pests makes these two species worst weeds of cropping systems. These weed species cause 28-68 % yield loss in important field crops such as soybean and cotton every year. These weeds are more prevalent in no-till systems and, thus, becoming a major issue in conservation agriculture. Cultural practices such as crop rotations, seed rate manipulation, mulching, inter-row tillage and narrow row spacing may provide an effective control of these species. However, such methods are not feasible and applicable under all types of conditions. Different herbicides also provide a varying degree of control depending on crop, agronomic practices, herbicide dose, application time and season. However, both these species have evolved resistance against multiple herbicides, including glyphosate and paraquat. The use of alternative herbicides and integrated management strategies may provide better control of herbicide-resistant C. bonariensis and C. canadensis. Management plans based on the eco-biological interactions of these species may prove sustainable in the future.

Vegetable Grafting: The Implications of a Growing Agronomic Imperative for Vegetable Fruit Quality and Nutritive Value

PubMed Central

Kyriacou, Marios C.; Rouphael, Youssef; Colla, Giuseppe; Zrenner, Rita; Schwarz, Dietmar

2017-01-01

Grafting has become an imperative for intensive vegetable production since chlorofluorocarbon-based soil fumigants were banned from use on grounds of environmental protection. Compelled by this development, research into rootstock–scion interaction has broadened the potential applications of grafting in the vegetable industry beyond aspects of soil phytopathology. Grafting has been increasingly tapped for cultivation under adverse environs posing abiotic and biotic stresses to vegetable crops, thus enabling expansion of commercial production onto otherwise under-exploited land. Vigorous rootstocks have been employed not only in the open field but also under protected cultivation where increase in productivity improves distribution of infrastructural and energy costs. Applications of grafting have expanded mainly in two families: the Cucurbitaceae and the Solanaceae, both of which comprise major vegetable crops. As the main drives behind the expansion of vegetable grafting have been the resistance to soilborne pathogens, tolerance to abiotic stresses and increase in yields, rootstock selection and breeding have accordingly conformed to the prevailing demand for improving productivity, arguably at the expense of fruit quality. It is, however, compelling to assess the qualitative implications of this growing agronomic practice for human nutrition. Problems of impaired vegetable fruit quality have not infrequently been associated with the practice of grafting. Accordingly, the aim of the current review is to reassess how the practice of grafting and the prevalence of particular types of commercial rootstocks influence vegetable fruit quality and, partly, storability. Physical, sensorial and bioactive aspects of quality are examined with respect to grafting for watermelon, melon, cucumber, tomato, eggplant, and pepper. The physiological mechanisms at play which mediate rootstock effects on scion performance are discussed in interpreting the implications of grafting for the configuration of vegetable fruit physicochemical quality and nutritive value. PMID:28553298

Application of Endophytic Pseudomonas fluorescens and a Bacterial Consortium to Brassica napus Can Increase Plant Height and Biomass under Greenhouse and Field Conditions

PubMed Central

Lally, Richard D.; Galbally, Paul; Moreira, António S.; Spink, John; Ryan, David; Germaine, Kieran J.; Dowling, David N.

2017-01-01

Plant associated bacteria with plant growth promotion (PGP) properties have been proposed for use as environmentally friendly biofertilizers for sustainable agriculture; however, analysis of their efficacy in the field is often limited. In this study, greenhouse and field trials were carried out using individual endophytic Pseudomonas fluorescens strains, the well characterized rhizospheric P. fluorescens F113 and an endophytic microbial consortium of 10 different strains. These bacteria had been previously characterized with respect to their PGP properties in vitro and had been shown to harbor a range of traits associated with PGP including siderophore production, 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase activity, and inorganic phosphate solubilization. In greenhouse experiments individual strains tagged with gfp and Kmr were applied to Brassica napus as a seed coat and were shown to effectively colonize the rhizosphere and root of B. napus and in addition they demonstrated a significant increase in plant biomass compared with the non-inoculated control. In the field experiment, the bacteria (individual and consortium) were spray inoculated to winter oilseed rape B. napus var. Compass which was grown under standard North Western European agronomic conditions. Analysis of the data provides evidence that the application of the live bacterial biofertilizers can enhance aspects of crop development in B. napus at field scale. The field data demonstrated statistically significant increases in crop height, stem/leaf, and pod biomass, particularly, in the case of the consortium inoculated treatment. However, although seed and oil yield were increased in the field in response to inoculation, these data were not statistically significant under the experimental conditions tested. Future field trials will investigate the effectiveness of the inoculants under different agronomic conditions. PMID:29312422

Different efficiencies of the same mechanisms result in distinct Cd tolerance within Rhizobium.

PubMed

Cardoso, Paulo; Corticeiro, Sofia; Freitas, Rosa; Figueira, Etelvina

2018-04-15

Soil contamination with metals is a widespread problem posing risks to humans and ecosystems. Metal contaminated soils often hold poor microbial density and biodiversity. Among soil bacteria, rhizobia have a great agronomic and environmental significance and are major contributors to a sustainable maintenance of soil fertility. This group of microorganisms are severely affected by metals, such as cadmium (Cd), but information about metal resistance mechanisms in rhizobia is still limited. A concerted approach of the different mechanisms conferring Cd tolerance to rhizobia was conducted using two Rhizobium strains with contrasting tolerances to Cd. Results show that both strains resort to the same mechanisms (extracellular immobilization, periplasmic allocation, cytoplasmic sequestration and biotransformation of toxic products) to overcome stress, but differences in the efficiencies of some mechanisms were noticed. The ability of Rhizobium to increase glutathione in the presence of Cd emerges as a central factor in the tolerance to Cd and is as a feature to be looked for when screening or transforming microorganisms to integrate plant-microbe consortia. These could promote plant growth at contaminated sites, being more efficient for the cleanup of metals from contaminated sites and the restoration of soil quality. Copyright © 2017 Elsevier Inc. All rights reserved.

Systems Biology for Smart Crops and Agricultural Innovation: Filling the Gaps between Genotype and Phenotype for Complex Traits Linked with Robust Agricultural Productivity and Sustainability

PubMed Central

Pathak, Rajesh Kumar; Gupta, Sanjay Mohan; Gaur, Vikram Singh; Pandey, Dinesh

2015-01-01

Abstract In recent years, rapid developments in several omics platforms and next generation sequencing technology have generated a huge amount of biological data about plants. Systems biology aims to develop and use well-organized and efficient algorithms, data structure, visualization, and communication tools for the integration of these biological data with the goal of computational modeling and simulation. It studies crop plant systems by systematically perturbing them, checking the gene, protein, and informational pathway responses; integrating these data; and finally, formulating mathematical models that describe the structure of system and its response to individual perturbations. Consequently, systems biology approaches, such as integrative and predictive ones, hold immense potential in understanding of molecular mechanism of agriculturally important complex traits linked to agricultural productivity. This has led to identification of some key genes and proteins involved in networks of pathways involved in input use efficiency, biotic and abiotic stress resistance, photosynthesis efficiency, root, stem and leaf architecture, and nutrient mobilization. The developments in the above fields have made it possible to design smart crops with superior agronomic traits through genetic manipulation of key candidate genes. PMID:26484978

Evaluation of Borage Extracts As Potential Biostimulant Using a Phenomic, Agronomic, Physiological, and Biochemical Approach

PubMed Central

Bulgari, Roberta; Morgutti, Silvia; Cocetta, Giacomo; Negrini, Noemi; Farris, Stefano; Calcante, Aldo; Spinardi, Anna; Ferrari, Enrico; Mignani, Ilaria; Oberti, Roberto; Ferrante, Antonio

2017-01-01

Biostimulants are substances able to improve water and nutrient use efficiency and counteract stress factors by enhancing primary and secondary metabolism. Premise of the work was to exploit raw extracts from leaves (LE) or flowers (FE) of Borago officinalis L., to enhance yield and quality of Lactuca sativa ‘Longifolia,’ and to set up a protocol to assess their effects. To this aim, an integrated study on agronomic, physiological and biochemical aspects, including also a phenomic approach, has been adopted. Extracts were diluted to 1 or 10 mL L–1, sprayed onto lettuce plants at the middle of the growing cycle and 1 day before harvest. Control plants were treated with water. Non-destructive analyses were conducted to assess the effect of extracts on biomass with an innovative imaging technique, and on leaf photosynthetic efficiency (chlorophyll a fluorescence and leaf gas exchanges). At harvest, the levels of ethylene, photosynthetic pigments, nitrate, and primary (sucrose and total sugars) and secondary (total phenols and flavonoids) metabolites, including the activity and levels of phenylalanine ammonia lyase (PAL) were assessed. Moreover, a preliminary study of the effects during postharvest was performed. Borage extracts enhanced the primary metabolism by increasing leaf pigments and photosynthetic activity. Plant fresh weight increased upon treatments with 10 mL L–1 doses, as correctly estimated by multi-view angles images. Chlorophyll a fluorescence data showed that FEs were able to increase the number of active reaction centers per cross section; a similar trend was observed for the performance index. Ethylene was three-fold lower in FEs treatments. Nitrate and sugar levels did not change in response to the different treatments. Total flavonoids and phenols, as well as the total protein levels, the in vitro PAL specific activity, and the levels of PAL-like polypeptides were increased by all borage extracts, with particular regard to FEs. FEs also proved efficient in preventing degradation and inducing an increase in photosynthetic pigments during storage. In conclusion, borage extracts, with particular regard to the flower ones, appear to indeed exert biostimulant effects on lettuce; future work will be required to further investigate on their efficacy in different conditions and/or species. PMID:28638392

[Phosphorus use efficiency of wheat on three typical farmland soils under long-term fertilization].

PubMed

Gao, Jing; Zhang, Shu-xiang; Xu, Ming-gang; Huang, Shao-min; Yang, Xue-yun

2009-09-01

Field experiments were conducted on three typical farmland soils (loess soil, fluvo-aquic soil, and cinnamon fluvo-aquic soil) in Northern China to study the grain yield, phosphorus agronomic efficiency (PAE), and phosphorus use efficiency (PUE) of wheat under effects of long-term fertilizations. Seven treatments were installed, i.e., non-fertilization (CK), nitrogen fertilization (N), nitrogen-potassium fertilization (NK), nitrogen-phosphorus fertilization (NP), nitrogen-phosphorus-potassium fertilization (NPK), NPK plus straw returning (NPKS), and NPK plus manure application (NPKM). The averaged wheat grain yields under long-term P fertilizations (treatments NP, NPK, NPKS, and NPKM) ranged from 2914 kg x hm(-2) to 6219 kg x hm(-2), being 200%-400% higher than those under no P fertilizations (treatments CK, N, and NK), and no significant differences were observed between the P fertilizations. In the early years of the experiment, the PAE in treatment NPK on the loess soil, fluvo-aquic soil, and cinnamon fluvo-aquic soil was 17.0 kg x kg(-1), 20.3 kg x kg(-1), and 13.3 kg x kg(-1), and the PUE was 15.3%, 31.2%, and 23.8%, respectively. After 15-year fertilization, the PAE and PUE in treatment NPK increased annually by 3.9 kg x kg(-1) and 1.3% on loess soil, 2.5 kg x kg(-1) and 0.9% on fluvo-aquic soil, and 2.8 kg x kg(-1) and 1.0% on cinnamon fluvo-aquic soil, respectively. There were no significant differences in the PAE and PUE among the P treatments for the same soils. In Northern China, long-term P fertilization could increase the wheat grain yield and PUE significantly, and the mean annual increase of PAE and PUE in treatment NPKM was higher on loess soil than on fluvo-aquic soil and cinnamon fluvo-aquic soil.

Methods for simultaneous control of lignin content and composition, and cellulose content in plants

DOEpatents

Chiang, Vincent Lee C.; Li, Laigeng

2005-02-15

The present invention relates to a method of concurrently introducing multiple genes into plants and trees is provided. The method includes simultaneous transformation of plants with multiple genes from the phenylpropanoid pathways including 4CL, CAld5H, AldOMT, SAD and CAD genes and combinations thereof to produce various lines of transgenic plants displaying altered agronomic traits. The agronomic traits of the plants are regulated by the orientation of the specific genes and the selected gene combinations, which are incorporated into the plant genome.

GWAS for plant growth stages and yield components in spring wheat (Triticum aestivum L.) harvested in three regions of Kazakhstan.

PubMed

Turuspekov, Yerlan; Baibulatova, Aida; Yermekbayev, Kanat; Tokhetova, Laura; Chudinov, Vladimir; Sereda, Grigoriy; Ganal, Martin; Griffiths, Simon; Abugalieva, Saule

2017-11-14

Spring wheat is the largest agricultural crop grown in Kazakhstan with an annual sowing area of 12 million hectares in 2016. Annually, the country harvests around 15 million tons of high quality grain. Despite environmental stress factors it is predicted that the use of new technologies may lead to increases in productivity from current levels of 1.5 to up to 3 tons per hectare. One way of improving wheat productivity is by the application of new genomic oriented approaches in plant breeding projects. Genome wide association studies (GWAS) are emerging as powerful tools for the understanding of the inheritance of complex traits via utilization of high throughput genotyping technologies and phenotypic assessments of plant collections. In this study, phenotyping and genotyping data on 194 spring wheat accessions from Kazakhstan, Russia, Europe, and CIMMYT were assessed for the identification of marker-trait associations (MTA) of agronomic traits by using GWAS. Field trials in Northern, Central and Southern regions of Kazakhstan using 194 spring wheat accessions revealed strong correlations of yield with booting date, plant height, biomass, number of spikes per plant, and number of kernels per spike. The accessions from Europe and CIMMYT showed high breeding potential for Southern and Central regions of the country in comparison with the performance of the local varieties. The GGE biplot method, using average yield per plant, suggested a clear separation of accessions into their three breeding origins in relationship to the three environments in which they were evaluated. The genetic variation in the three groups of accessions was further studied using 3245 polymorphic SNP (single nucleotide polymorphism) markers. The application of Principal Coordinate analysis clearly grouped the 194 accessions into three clades according to their breeding origins. GWAS on data from nine field trials allowed the identification of 114 MTAs for 12 different agronomic traits. Field evaluation of foreign germplasm revealed its poor yield performance in Northern Kazakhstan, which is the main wheat growing region in the country. However, it was found that EU and CIMMYT germplasm has high breeding potential to improve yield performance in Central and Southern regions. The use of Principal Coordinate analysis clearly separated the panel into three distinct groups according to their breeding origin. GWAS based on use of the TASSEL 5.0 package allowed the identification of 114 MTAs for twelve agronomic traits. The study identifies a network of key genes for improvement of yield productivity in wheat growing regions of Kazakhstan.

[Influence of different levels of irrigation and nitrogen application on the root growth and yield of spring wheat under permanent raised bed.

PubMed

Chen, Juan; Ma, Zhong Ming; Lyu, Xiao Dong; Liu, Ting Ting

2016-05-01

To establish an optimum combination of water and nitrogen for spring under permanent raised bed (PRB) tillage, a field investigation was carried out to assess effects of irrigation and N application on root growth, yield, irrigation water productivity and N efficiency. The experiment followed a completely randomized split-plot design, taking furrow irrigation 1200 m 3 ·hm -2 (W 1 ), 2400 m 3 ·hm -2 (W 2 ), 3600 m 3 ·hm -2 (W 3 ) as main plot treatments, and N rates (0, 90, 180, 270 kg·hm -2 ) the sub-plot treatments. Our results showed that the root mass density (RWD) was significantly affected by irrigation and N application, the RWD of spring wheat reached a maximum at the filling stage, followed by a slow decline until maturity, while the effect of N on RWD depended on soil water conditions. The application of N 2 produced the maximum RWD under W 2 irrigation, the application of N 1 produced the maximum RWD under W 1 irrigation, and the application of N 3 produced the maximum RWD under W 3 irrigation. The order of irrigation regime effect on RWD of spring wheat was W 2 >W 3 >W 1 . The order of irrigation regime and N rate effect on RWD of spring wheat was irrigation>N>irrigation and N interaction. W 2 N 2 treatment produced the highest RWD value. The root-to-shoot ratio (R/S) descended with the rising of irrigation water and nitrogen amount, and the combined treatment (W 1 N 0 ) produced the maximum R/S. The root system was mainly distributed in the 0-40 cm soil layer, in which the RWD accounted for 85% of the total RWD in 0-80 cm soil depth. There was a significantly positive relationship between RWD in the 0-40 cm and the yield of spring wheat, RWD in the 40-60 cm had higher linear dependence on the yield of spring wheat. W 2 increased the proportion of RWD in the deep soil layer (40-60 cm). The irrigation and N rate had a significant impact on biomass and grain yield of spring wheat, the biomass increased as the N rate and water amount increased, W 2 N 2 treatment produced the highest grain yield, irrigation water productivity descended with increasing the irrigation amount, and the nitrogen agronomic efficiency descended with increasing N rate. It was concluded that the irrigation level W 2 (2400 m 3 ·hm -2 ) and nitrogen level N 2 (180 kg·hm -2 ) could be recommended as the best combination of water and N, which promoted the root growth, improved grain yield, water and nitrogen use efficiencies of spring wheat production under PRB tillage in the experimental area.

Selection for Improved Energy Use Efficiency and Drought Tolerance in Canola Results in Distinct Transcriptome and Epigenome Changes.

PubMed

Verkest, Aurine; Byzova, Marina; Martens, Cindy; Willems, Patrick; Verwulgen, Tom; Slabbinck, Bram; Rombaut, Debbie; Van de Velde, Jan; Vandepoele, Klaas; Standaert, Evi; Peeters, Marrit; Van Lijsebettens, Mieke; Van Breusegem, Frank; De Block, Marc

2015-08-01

To increase both the yield potential and stability of crops, integrated breeding strategies are used that have mostly a direct genetic basis, but the utility of epigenetics to improve complex traits is unclear. A better understanding of the status of the epigenome and its contribution to agronomic performance would help in developing approaches to incorporate the epigenetic component of complex traits into breeding programs. Starting from isogenic canola (Brassica napus) lines, epilines were generated by selecting, repeatedly for three generations, for increased energy use efficiency and drought tolerance. These epilines had an enhanced energy use efficiency, drought tolerance, and nitrogen use efficiency. Transcriptome analysis of the epilines and a line selected for its energy use efficiency solely revealed common differentially expressed genes related to the onset of stress tolerance-regulating signaling events. Genes related to responses to salt, osmotic, abscisic acid, and drought treatments were specifically differentially expressed in the drought-tolerant epilines. The status of the epigenome, scored as differential trimethylation of lysine-4 of histone 3, further supported the phenotype by targeting drought-responsive genes and facilitating the transcription of the differentially expressed genes. From these results, we conclude that the canola epigenome can be shaped by selection to increase energy use efficiency and stress tolerance. Hence, these findings warrant the further development of strategies to incorporate epigenetics into breeding. © 2015 American Society of Plant Biologists. All Rights Reserved.

Crop immunity against viruses: outcomes and future challenges

PubMed Central

Nicaise, Valérie

2014-01-01

Viruses cause epidemics on all major cultures of agronomic importance, representing a serious threat to global food security. As strict intracellular pathogens, they cannot be controlled chemically and prophylactic measures consist mainly in the destruction of infected plants and excessive pesticide applications to limit the population of vector organisms. A powerful alternative frequently employed in agriculture relies on the use of crop genetic resistances, approach that depends on mechanisms governing plant–virus interactions. Hence, knowledge related to the molecular bases of viral infections and crop resistances is key to face viral attacks in fields. Over the past 80 years, great advances have been made on our understanding of plant immunity against viruses. Although most of the known natural resistance genes have long been dominant R genes (encoding NBS-LRR proteins), a vast number of crop recessive resistance genes were cloned in the last decade, emphasizing another evolutive strategy to block viruses. In addition, the discovery of RNA interference pathways highlighted a very efficient antiviral system targeting the infectious agent at the nucleic acid level. Insidiously, plant viruses evolve and often acquire the ability to overcome the resistances employed by breeders. The development of efficient and durable resistances able to withstand the extreme genetic plasticity of viruses therefore represents a major challenge for the coming years. This review aims at describing some of the most devastating diseases caused by viruses on crops and summarizes current knowledge about plant–virus interactions, focusing on resistance mechanisms that prevent or limit viral infection in plants. In addition, I will discuss the current outcomes of the actions employed to control viral diseases in fields and the future investigations that need to be undertaken to develop sustainable broad-spectrum crop resistances against viruses. PMID:25484888

Improving crop productivity and resource use efficiency to ensure food security and environmental quality in China.

PubMed

Fan, Mingsheng; Shen, Jianbo; Yuan, Lixing; Jiang, Rongfeng; Chen, Xinping; Davies, William J; Zhang, Fusuo

2012-01-01

In recent years, agricultural growth in China has accelerated remarkably, but most of this growth has been driven by increased yield per unit area rather than by expansion of the cultivated area. Looking towards 2030, to meet the demand for grain and to feed a growing population on the available arable land, it is suggested that annual crop production should be increased to around 580 Mt and that yield should increase by at least 2% annually. Crop production will become more difficult with climate change, resource scarcity (e.g. land, water, energy, and nutrients) and environmental degradation (e.g. declining soil quality, increased greenhouse gas emissions, and surface water eutrophication). To pursue the fastest and most practical route to improved yield, the near-term strategy is application and extension of existing agricultural technologies. This would lead to substantial improvement in crop and soil management practices, which are currently suboptimal. Two pivotal components are required if we are to follow new trajectories. First, the disciplines of soil management and agronomy need to be given increased emphasis in research and teaching, as part of a grand food security challenge. Second, continued genetic improvement in crop varieties will be vital. However, our view is that the biggest gains from improved technology will come most immediately from combinations of improved crops and improved agronomical practices. The objectives of this paper are to summarize the historical trend of crop production in China and to examine the main constraints to the further increase of crop productivity. The paper provides a perspective on the challenge faced by science and technology in agriculture which must be met both in terms of increased crop productivity but also in increased resource use efficiency and the protection of environmental quality.

Assembly of the draft genome of buckwheat and its applications in identifying agronomically useful genes

PubMed Central

Yasui, Yasuo; Hirakawa, Hideki; Ueno, Mariko; Matsui, Katsuhiro; Katsube-Tanaka, Tomoyuki; Yang, Soo Jung; Aii, Jotaro; Sato, Shingo; Mori, Masashi

2016-01-01

Buckwheat (Fagopyrum esculentum Moench; 2n = 2x = 16) is a nutritionally dense annual crop widely grown in temperate zones. To accelerate molecular breeding programmes of this important crop, we generated a draft assembly of the buckwheat genome using short reads obtained by next-generation sequencing (NGS), and constructed the Buckwheat Genome DataBase. After assembling short reads, we determined 387,594 scaffolds as the draft genome sequence (FES_r1.0). The total length of FES_r1.0 was 1,177,687,305 bp, and the N50 of the scaffolds was 25,109 bp. Gene prediction analysis revealed 286,768 coding sequences (CDSs; FES_r1.0_cds) including those related to transposable elements. The total length of FES_r1.0_cds was 212,917,911 bp, and the N50 was 1,101 bp. Of these, the functions of 35,816 CDSs excluding those for transposable elements were annotated by BLAST analysis. To demonstrate the utility of the database, we conducted several test analyses using BLAST and keyword searches. Furthermore, we used the draft genome as a reference sequence for NGS-based markers, and successfully identified novel candidate genes controlling heteromorphic self-incompatibility of buckwheat. The database and draft genome sequence provide a valuable resource that can be used in efforts to develop buckwheat cultivars with superior agronomic traits. PMID:27037832

A Combined Approach of Sensor Data Fusion and Multivariate Geostatistics for Delineation of Homogeneous Zones in an Agricultural Field

PubMed Central

Castrignanò, Annamaria; Quarto, Ruggiero; Vitti, Carolina; Langella, Giuliano; Terribile, Fabio

2017-01-01

To assess spatial variability at the very fine scale required by Precision Agriculture, different proximal and remote sensors have been used. They provide large amounts and different types of data which need to be combined. An integrated approach, using multivariate geostatistical data-fusion techniques and multi-source geophysical sensor data to determine simple summary scale-dependent indices, is described here. These indices can be used to delineate management zones to be submitted to differential management. Such a data fusion approach with geophysical sensors was applied in a soil of an agronomic field cropped with tomato. The synthetic regionalized factors determined, contributed to split the 3D edaphic environment into two main horizontal structures with different hydraulic properties and to disclose two main horizons in the 0–1.0-m depth with a discontinuity probably occurring between 0.40 m and 0.70 m. Comparing this partition with the soil properties measured with a shallow sampling, it was possible to verify the coherence in the topsoil between the dielectric properties and other properties more directly related to agronomic management. These results confirm the advantages of using proximal sensing as a preliminary step in the application of site-specific management. Combining disparate spatial data (data fusion) is not at all a naive problem and novel and powerful methods need to be developed. PMID:29207510

A Combined Approach of Sensor Data Fusion and Multivariate Geostatistics for Delineation of Homogeneous Zones in an Agricultural Field.

PubMed

Castrignanò, Annamaria; Buttafuoco, Gabriele; Quarto, Ruggiero; Vitti, Carolina; Langella, Giuliano; Terribile, Fabio; Venezia, Accursio

2017-12-03

To assess spatial variability at the very fine scale required by Precision Agriculture, different proximal and remote sensors have been used. They provide large amounts and different types of data which need to be combined. An integrated approach, using multivariate geostatistical data-fusion techniques and multi-source geophysical sensor data to determine simple summary scale-dependent indices, is described here. These indices can be used to delineate management zones to be submitted to differential management. Such a data fusion approach with geophysical sensors was applied in a soil of an agronomic field cropped with tomato. The synthetic regionalized factors determined, contributed to split the 3D edaphic environment into two main horizontal structures with different hydraulic properties and to disclose two main horizons in the 0-1.0-m depth with a discontinuity probably occurring between 0.40 m and 0.70 m. Comparing this partition with the soil properties measured with a shallow sampling, it was possible to verify the coherence in the topsoil between the dielectric properties and other properties more directly related to agronomic management. These results confirm the advantages of using proximal sensing as a preliminary step in the application of site-specific management. Combining disparate spatial data (data fusion) is not at all a naive problem and novel and powerful methods need to be developed.

Effects of different on-farm management on yield and water use efficiency of Potato crop cultivated in semiarid environments under subsurface drip irrigation

NASA Astrophysics Data System (ADS)

Ghazouani, Hiba; Provenzano, Giuseppe; Rallo, Giovanni; Mguidiche, Amel; Douh, Boutheina; Boujelben, Abdelhamid

2016-04-01

In Tunisia the amount of water for irrigated agriculture is higher than about 80% of the total resource.The increasing population and the rising food demand, associated to the negative effects of climate change,make it crucial to adopt strategies aiming to improve water use efficiency (WUE). Moreover, the absence of an effective public policy for water management amplifies the imbalance between water supply and its demand. Despite improved irrigation technologies can enhance the efficiency of water distribution systems, to achieve environmental goals it is also necessaryto identify on-farm management strategies accounting for actual crop water requirement. The main objective of the paper was to assess the effects of different on-farm managementstrategies (irrigation scheduling and planting date) on yield and water use efficiency of Potato crop (Solanumtuberosum L.) irrigated with a subsurface drip system, under the semi-arid climate of central Tunisia. Experiments were carried out during three growing seasons (2012, 2014 and 2015) at the High Agronomic Institute of ChottMariem in Sousse, by considering different planting dates and irrigation depths, the latter scheduled according to the climate observed during the season. All the considered treatments received the same pesticide and fertilizer management. Experiments evidenced that the climatic variability characterizing the examined seasons (photoperiod, solar radiation and average temperature) affects considerably the crop phenological stages, and the late sowing shortens the crop cycle.It has also been demonstrated that Leaf Area Index (LAI) and crop yield resulted relatively higher for those treatments receiving larger amounts of seasonal water. Crop yield varied between 16.3 t/ha and 39.1 t/ha, with a trend linearly related to the ratio between the seasonal amount of water supplied (Irrigation, I and Precipitation, P) and the maximum crop evapotranspiration (ETm). The maximum crop yield was in particular obtained for a value of this ratio equal to 1.45. Moreover, when increasing the seasonal pluviometric deficit (P-ETm) and therefore the irrigation depth (I), standard deviations of crop yield tended to decrease, as a consequence ofthe more uniform soil water content in the root zone. In terms of agronomic water use efficiency (AWUE),differences among the investigated treatments varied in a quite narrow range,due to thecombined effects of seasonal precipitation and atmospheric water demand on irrigation depths and crop yield.On the other hand, when considering irrigation water use efficiency (IWUE), more relevant differences between treatments were observed,being the higher values of IWUEgenerally associated to the lower irrigation depths. However, to define the best irrigation management strategy it is necessary, from one side, to consider the availability of water and from the other, to perform aneconomic analysis accounting for the cost of water and the related benefits achievable by the farmer.

The application of secondary metabolites in the study of sorghum insect resistance

NASA Astrophysics Data System (ADS)

Chunming, Bai; Yifei, Liu; Xiaochun, Lu

2018-03-01

Insect attack is one of the main factors for limiting the production of rice and sorghum. To improve resistance to pests of rice and sorghum will be of great significance for meliorating their production and quality. However, the source and material of anti-pest was scarce. In this study, we will study on the expression patterns of hydrocyanic acid biosynthesis relative genes in sorghum firstly. And we will also genetically transform them into rice and sorghum by specific and constitutive promoters and verify their pest-resistant ability. Finally, high pest-resistant genetically modified new sorghum cultivars will be bred with favorable comprehensive agronomic traits.

Statistical analysis of agronomical factors and weather conditions influencing deoxynivalenol levels in oats in Scandinavia.

PubMed

Lindblad, M; Börjesson, T; Hietaniemi, V; Elen, O

2012-01-01

The relationship between weather data and agronomical factors and deoxynivalenol (DON) levels in oats was examined with the aim of developing a predictive model. Data were collected from a total of 674 fields during periods of up to 10 years in Finland, Norway and Sweden, and included DON levels in the harvested oats crop, agronomical factors and weather data. The results show that there was a large regional variation in DON levels, with higher levels in one region in Norway compared with other regions in Norway, Finland and Sweden. In this region the median DON level was 1000 ng g⁻¹ and the regulatory limit for human consumption (1750 ng g⁻¹) was exceeded in 28% of the samples. In other regions the median DON levels ranged from 75 to 270 ng g⁻¹, and DON levels exceeded 1750 ng g⁻¹ in 3-8% of the samples. Including more variables than region in a multiple regression model only increased the adjusted coefficient of determination from 0.17 to 0.24, indicating that very little of the variation in DON levels could be explained by weather data or agronomical factors. Thus, it was not possible to predict DON levels based on the variables included in this study. Further studies are needed to solve this problem. Apparently the infection and/or growth of DON producing Fusarium species are promoted in certain regions. One possibility may be to study the species distribution of fungal communities and their changes during the oats cultivation period in more detail.

An agronomic field-scale sensor network for monitoring soil water and temperature variation

NASA Astrophysics Data System (ADS)

Brown, D. J.; Gasch, C.; Brooks, E. S.; Huggins, D. R.; Campbell, C. S.; Cobos, D. R.

2014-12-01

Environmental sensor networks have been deployed in a variety of contexts to monitor plant, air, water and soil properties. To date, there have been relatively few such networks deployed to monitor dynamic soil properties in cropped fields. Here we report on experience with a distributed soil sensor network that has been deployed for seven years in a research farm with ongoing agronomic field operations. The Washington State University R. J. Cook Agronomy Farm (CAF), Pullman, WA, USA has recently been designated a United States Department of Agriculture (USDA) Long-Term Agro-Ecosystem Research (LTAR) site. In 2007, 12 geo-referenced locations at CAF were instrumented, then in 2009 this network was expended to 42 locations distributed across the 37-ha farm. At each of this locations, Decagon 5TE probes (Decagon Devices Inc., Pullman, WA, USA) were installed at five depths (30, 60, 90, 120, and 150 cm), with temperature and volumetric soil moisture content recorded hourly. Initially, data loggers were wirelessly connected to a data station that could be accessed through a cell connection, but due to the logistics of agronomic field operations, we later buried the dataloggers at each site and now periodically download data via local radio transmission. In this presentation, we share our experience with the installation, maintenance, calibration and data processing associated with an agronomic soil monitoring network. We also present highlights of data derived from this network, including seasonal fluctuations of soil temperature and volumetric water content at each depth, and how these measurements are influenced by crop type, soil properties, landscape position, and precipitation events.

Distinct responses in ammonia-oxidizing archaea and bacteria after addition of biosolids to an agricultural soil.

PubMed

Kelly, John J; Policht, Katherine; Grancharova, Tanya; Hundal, Lakhwinder S

2011-09-01

The recently discovered ammonia-oxidizing archaea (AOA) have been suggested as contributors to the first step of nitrification in terrestrial ecosystems, a role that was previously assigned exclusively to ammonia-oxidizing bacteria (AOB). The current study assessed the effects of agricultural management, specifically amendment of soil with biosolids or synthetic fertilizer, on nitrification rates and copy numbers of archaeal and bacterial ammonia monooxygenase (amoA) genes. Anaerobically digested biosolids or synthetic fertilizer was applied annually for three consecutive years to field plots used for corn production. Biosolids were applied at two loading rates, a typical agronomic rate (27 Mg hectare(-1) year(-1)) and double the agronomic rate (54 Mg hectare(-1) year(-1)), while synthetic fertilizer was applied at an agronomic rate typical for the region (291 kg N hectare(-1) year(-1)). Both biosolids amendments and synthetic fertilizer increased soil N and corn yield, but only the biosolids amendments resulted in significant increases in nitrification rates and increases in the copy numbers of archaeal and bacterial amoA genes. In addition, only archaeal amoA gene copy numbers increased in response to biosolids applied at the typical agronomic rate and showed a significant correlation with nitrification rates. Finally, copy numbers of archaeal amoA genes were significantly higher than copy numbers of bacterial amoA genes for all treatments. These results implicate AOA as being primarily responsible for the increased nitrification observed in an agricultural soil amended with biosolids. These results also support the hypothesis that physiological differences between AOA and AOB may enable them to occupy distinct ecological niches.

A high density genetic map and QTL for agronomic and yield traits in Foxtail millet [Setaria italica (L.) P. Beauv].

PubMed

Fang, Xiaomei; Dong, Kongjun; Wang, Xiaoqin; Liu, Tianpeng; He, Jihong; Ren, Ruiyu; Zhang, Lei; Liu, Rui; Liu, Xueying; Li, Man; Huang, Mengzhu; Zhang, Zhengsheng; Yang, Tianyu

2016-05-04

Foxtail millet [Setaria italica (L.) P. Beauv.], a crop of historical importance in China, has been adopted as a model crop for studying C-4 photosynthesis, stress biology and biofuel traits. Construction of a high density genetic map and identification of stable quantitative trait loci (QTL) lay the foundation for marker-assisted selection for agronomic traits and yield improvement. A total of 10598 SSR markers were developed according to the reference genome sequence of foxtail millet cultivar 'Yugu1'. A total of 1013 SSR markers showing polymorphism between Yugu1 and Longgu7 were used to genotype 167 individuals from a Yugu1 × Longgu7 F2 population, and a high density genetic map was constructed. The genetic map contained 1035 loci and spanned 1318.8 cM with an average distance of 1.27 cM between adjacent markers. Based on agronomic and yield traits identified in 2 years, 29 QTL were identified for 11 traits with combined analysis and single environment analysis. These QTL explained from 7.0 to 14.3 % of phenotypic variation. Favorable QTL alleles for peduncle length originated from Longgu7 whereas favorable alleles for the other traits originated from Yugu1 except for qLMS6.1. New SSR markers, a high density genetic map and QTL identified for agronomic and yield traits lay the ground work for functional gene mapping, map-based cloning and marker-assisted selection in foxtail millet.

Genetic structure and diversity of indigenous rice (Oryza sativa) varieties in the Eastern Himalayan region of Northeast India.

PubMed

Choudhury, Baharul; Khan, Mohamed Latif; Dayanandan, Selvadurai

2013-12-01

The Eastern Himalayan region of Northeast (NE) India is home to a large number of indigenous rice varieties, which may serve as a valuable genetic resource for future crop improvement to meet the ever-increasing demand for food production. However, these varieties are rapidly being lost due to changes in land-use and agricultural practices, which favor agronomically improved varieties. A detailed understanding of the genetic structure and diversity of indigenous rice varieties is crucial for efficient utilization of rice genetic resources and for developing suitable conservation strategies. To explore the genetic structure and diversity of rice varieties in NE India, we genotyped 300 individuals of 24 indigenous rice varieties representing sali, boro, jum and glutinous types, 5 agronomically improved varieties, and one wild rice species (O. rufipogon) using seven SSR markers. A total of 85 alleles and a very high level of gene diversity (0.776) were detected among the indigenous rice varieties of the region. Considerable level of genetic variation was found within indigenous varieties whereas improved varieties were monoporphic across all loci. The comparison of genetic diversity among different types of rice revealed that sali type possessed the highest gene diversity (0.747) followed by jum (0.627), glutinous (0.602) and boro (0.596) types of indigenous rice varieties, while the lowest diversity was detected in agronomically improved varieties (0.459). The AMOVA results showed that 66% of the variation was distributed among varieties indicating a very high level of genetic differentiation in rice varieties in the region. Two major genetically defined clusters corresponding to indica and japonica groups were detected in rice varieties of the region. Overall, traditionally cultivated indigenous rice varieties in NE India showed high levels of genetic diversity comparable to levels of genetic diversity reported from wild rice populations in various parts of the world. The efforts for conservation of rice germplasm in NE India should consider saving rice varieties representing different types with specific emphasis given to sali and jum types. The protection against the loss of vast genetic diversity found in indigenous rice varieties in NE India is crucial for maintaining future food security in the changing world.

Translating knowledge about abiotic stress tolerance to breeding programmes.

PubMed

Gilliham, Matthew; Able, Jason A; Roy, Stuart J

2017-06-01

Plant breeding and improvements in agronomic practice are making a consistent contribution to increasing global crop production year upon year. However, the rate of yield improvement currently lags behind the targets set to produce enough food to meet the demands of the predicted global population in 2050. Furthermore, crops that are exposed to harmful abiotic environmental factors (abiotic stresses, e.g. water limitation, salinity, extreme temperature) are prone to reduced yields. Here, we briefly describe the processes undertaken in conventional breeding programmes, which are usually designed to improve yields in near-optimal conditions rather than specifically breeding for improved crop yield stability under stressed conditions. While there is extensive fundamental research activity that examines mechanisms of plant stress tolerance, there are few examples that apply this research to improving commercial crop yields. There are notable exceptions, and we highlight some of these to demonstrate the magnitude of yield gains that could be made by translating agronomic, phenological and genetic solutions focused on improving or mitigating the effect of abiotic stress in the field; in particular, we focus on improvements in crop water-use efficiency and salinity tolerance. We speculate upon the reasons for the disconnect between research and research translation. We conclude that to realise untapped rapid gains towards food security targets new funding structures need to be embraced. Such funding needs to serve both the core and collaborative activities of the fundamental, pre-breeding and breeding research communities in order to expedite the translation of innovative research into the fields of primary producers. © 2016 The Authors The Plant Journal © 2016 John Wiley & Sons Ltd.

Genetic Variability of 27 Traits in a Core Collection of Flax (Linum usitatissimum L.)

PubMed Central

You, Frank M.; Jia, Gaofeng; Xiao, Jin; Duguid, Scott D.; Rashid, Khalid Y.; Booker, Helen M.; Cloutier, Sylvie

2017-01-01

Assessment of genetic variability of plant core germplasm is needed for efficient germplasm utilization in breeding improvement. A total of 391 accessions of a flax core collection, which preserves the variation present in the world collection of 3,378 accessions maintained by Plant Gene Resources of Canada (PGRC) and represents a broad range of geographical origins, different improvement statuses and two morphotypes, was evaluated in field trials in up to 8 year-location environments for 10 agronomic, eight seed quality, six fiber and three disease resistance traits. The large phenotypic variation in this subset was explained by morphotypes (22%), geographical origins (11%), and other variance components (67%). Both divergence and similarity between two basic morphotypes, namely oil or linseed and fiber types, were observed, whereby linseed accessions had greater thousand seed weight, seeds m−2, oil content, branching capability and resistance to powdery mildew while fiber accessions had greater straw weight, plant height, protein content and resistance to pasmo and fusarium wilt diseases, but they had similar performance in many traits and some of them shared common characteristics of fiber and linseed types. Weak geographical patterns within either fiber or linseed accessions were confirmed, but specific trait performance was identified in East Asia for fiber type, and South Asia and North America for linseed type. Relatively high broad-sense heritability was obtained for seed quality traits, followed by agronomic traits and resistance to powdery mildew and fusarium wilt. Diverse phenotypic and genetic variability in the flax core collection constitutes a useful resource for breeding. PMID:28993783

Cell wall composition throughout development for the model grass Brachypodium distachyon

PubMed Central

Rancour, David M.; Marita, Jane M.; Hatfield, Ronald D.

2012-01-01

Temperate perennial grasses are important worldwide as a livestock nutritive energy source and a potential feedstock for lignocellulosic biofuel production. The annual temperate grass Brachypodium distachyon has been championed as a useful model system to facilitate biological research in agriculturally important temperate forage grasses based on phylogenetic relationships. To physically corroborate genetic predictions, we determined the chemical composition profiles of organ-specific cell walls throughout the development of two common diploid accessions of Brachypodium distachyon, Bd21-3 and Bd21. Chemical analysis was performed on cell walls isolated from distinct organs (i.e., leaves, sheaths, stems, and roots) at three developmental stages of (1) 12-day seedling, (2) vegetative-to-reproductive transition, and (3) mature seed fill. In addition, we have included cell wall analysis of embryonic callus used for genetic transformations. Composition of cell walls based on components lignin, hydroxycinnamates, uronosyls, neutral sugars, and protein suggests that Brachypodium distachyon is similar chemically to agriculturally important forage grasses. There were modest compositional differences in hydroxycinnamate profiles between accessions Bd21-3 and Bd21. In addition, when compared to agronomical important C3 grasses, more mature Brachypodium stem cell walls have a relative increase in glucose of 48% and a decrease in lignin of 36%. Though differences exist between Brachypodium and agronomical important C3 grasses, Brachypodium distachyon should be still a useful model system for genetic manipulation of cell wall composition to determine the impact upon functional characteristics such as rumen digestibility or energy conversion efficiency for bioenergy production. PMID:23227028

Agronomic improvements can make future cereal systems in South Asia far more productive and result in a lower environmental footprint.

PubMed

Ladha, Jagdish Kumar; Rao, Adusumilli Narayana; Raman, Anitha K; Padre, Agnes Tirol; Dobermann, Achim; Gathala, Mahesh; Kumar, Virender; Saharawat, Yashpal; Sharma, Sheetal; Piepho, Hans Peter; Alam, Md Mursedul; Liak, Ranjan; Rajendran, Ramasamy; Reddy, Chinnagangannagari Kesava; Parsad, Rajender; Sharma, Parbodh C; Singh, Sati Shankar; Saha, Abhijit; Noor, Shamsoon

2016-03-01

South Asian countries will have to double their food production by 2050 while using resources more efficiently and minimizing environmental problems. Transformative management approaches and technology solutions will be required in the major grain-producing areas that provide the basis for future food and nutrition security. This study was conducted in four locations representing major food production systems of densely populated regions of South Asia. Novel production-scale research platforms were established to assess and optimize three futuristic cropping systems and management scenarios (S2, S3, S4) in comparison with current management (S1). With best agronomic management practices (BMPs), including conservation agriculture (CA) and cropping system diversification, the productivity of rice- and wheat-based cropping systems of South Asia increased substantially, whereas the global warming potential intensity (GWPi) decreased. Positive economic returns and less use of water, labor, nitrogen, and fossil fuel energy per unit food produced were achieved. In comparison with S1, S4, in which BMPs, CA and crop diversification were implemented in the most integrated manner, achieved 54% higher grain energy yield with a 104% increase in economic returns, 35% lower total water input, and a 43% lower GWPi. Conservation agriculture practices were most suitable for intensifying as well as diversifying wheat-rice rotations, but less so for rice-rice systems. This finding also highlights the need for characterizing areas suitable for CA and subsequent technology targeting. A comprehensive baseline dataset generated in this study will allow the prediction of extending benefits to a larger scale. © 2015 John Wiley & Sons Ltd.

Genetic Variability of 27 Traits in a Core Collection of Flax (Linum usitatissimum L.).

PubMed

You, Frank M; Jia, Gaofeng; Xiao, Jin; Duguid, Scott D; Rashid, Khalid Y; Booker, Helen M; Cloutier, Sylvie

2017-01-01

Assessment of genetic variability of plant core germplasm is needed for efficient germplasm utilization in breeding improvement. A total of 391 accessions of a flax core collection, which preserves the variation present in the world collection of 3,378 accessions maintained by Plant Gene Resources of Canada (PGRC) and represents a broad range of geographical origins, different improvement statuses and two morphotypes, was evaluated in field trials in up to 8 year-location environments for 10 agronomic, eight seed quality, six fiber and three disease resistance traits. The large phenotypic variation in this subset was explained by morphotypes (22%), geographical origins (11%), and other variance components (67%). Both divergence and similarity between two basic morphotypes, namely oil or linseed and fiber types, were observed, whereby linseed accessions had greater thousand seed weight, seeds m -2 , oil content, branching capability and resistance to powdery mildew while fiber accessions had greater straw weight, plant height, protein content and resistance to pasmo and fusarium wilt diseases, but they had similar performance in many traits and some of them shared common characteristics of fiber and linseed types. Weak geographical patterns within either fiber or linseed accessions were confirmed, but specific trait performance was identified in East Asia for fiber type, and South Asia and North America for linseed type. Relatively high broad-sense heritability was obtained for seed quality traits, followed by agronomic traits and resistance to powdery mildew and fusarium wilt. Diverse phenotypic and genetic variability in the flax core collection constitutes a useful resource for breeding.

Managing Nitrogen in the anthropocene: integrating social and ecological science

NASA Astrophysics Data System (ADS)

Zhang, X.; Mauzerall, D. L.; Davidson, E. A.; Kanter, D.; Cai, R.; Searchinger, T.

2014-12-01

Human alteration of the global nitrogen cycle by agricultural activities has provided nutritious food to society, but also poses increasing threats to human and ecosystem health through unintended pollution. Managing nitrogen more efficiently in crop production is critical for addressing both food security and environmental challenges. Technologies and management practices have been developed to increase the uptake of applied nitrogen by crops. However, nitrogen use efficiency (NUE, yield per unit nitrogen input) is also affected by social and economic factors. For example, to maximize profit, farmers may change crop choice or their nitrogen application rate, both of which lead to a change in NUE. To evaluate such impacts, we use both theoretical and empirical approaches on micro (farm) and macro (national) scales: 1) We developed a bio-economic model (NUE3) on a farm scale to investigate how market signals (e.g. fertilizer and crop prices), government policies, and nitrogen-efficient technologies affect NUE. We demonstrate that if factors that influence nitrogen inputs (e.g. fertilizer-to-crop price ratios) are not considered, NUE projections will be poorly constrained. The impact of nitrogen-efficient technologies on NUE not only depends on how technology changes the production function, but also relies on the prices of the technologies, fertilizers, and crops. 2) We constructed a database of the nitrogen budget in crop production for major crops and major crop producing countries from 1961 to 2010. Using this database, we investigate historical trends of NUE and its relationship to agronomic, economic, social, and policy factors. We find that NUE in most developed countries follows a "U-shape" relationship with income level, consistent with the Environmental Kuznets Curve theory. According to the dynamics revealed in the NUE3 model, we propose three major pathways by which economic development affects NUE, namely consumption, technology, and public policy. Overall, our research suggests that it is critical to include social and economic processes when studying perturbations of the global nitrogen cycle and crafting environmental and food security policy. Better collaboration across disciplines is essential to improve nitrogen management in the anthropocene.

Iron nutrition, biomass production, and plant product quality.

PubMed

Briat, Jean-François; Dubos, Christian; Gaymard, Frédéric

2015-01-01

One of the grand challenges in modern agriculture is increasing biomass production, while improving plant product quality, in a sustainable way. Of the minerals, iron (Fe) plays a major role in this process because it is essential both for plant productivity and for the quality of their products. Fe homeostasis is an important determinant of photosynthetic efficiency in algae and higher plants, and we review here the impact of Fe limitation or excess on the structure and function of the photosynthetic apparatus. We also discuss the agronomic, plant breeding, and transgenic approaches that are used to remediate Fe deficiency of plants on calcareous soils, and suggest ways to increase the Fe content and bioavailability of the edible parts of crops to improve human diet. Copyright © 2014 Elsevier Ltd. All rights reserved.

Brassicaceae Mustards: Traditional and Agronomic Uses in Australia and New Zealand.

PubMed

Rahman, Mahmudur; Khatun, Amina; Liu, Lei; Barkla, Bronwyn J

2018-01-21

Commonly cultivated Brassicaceae mustards, namely garlic mustard ( Alliaria petiolata ), white mustard ( Brassica alba ), Ethiopian mustard ( B. carinata ), Asian mustard ( B. juncea ), oilseed rape ( B. napus ), black mustard ( B. nigra ), rapeseed ( B. rapa ), white ball mustard ( Calepina irregularis ), ball mustard ( Neslia paniculata ), treacle mustard ( Erysimum repandum ), hedge mustard ( Sisymbrium officinale ), Asian hedge mustard ( S. orientale ), smooth mustard ( S. erysimoides ) and canola are the major economically important oilseed crops in many countries. Mustards were naturalized to Australia and New Zealand and Australia is currently the second largest exporter of Brassicaceae oilseeds to meet the global demand for a healthy plant-derived oil, high in polyunsaturated fats. Apart from providing edible oil, various parts of these plants and many of their phytochemicals have been used traditionally for both agronomic as well as medicinal purposes, with evidence of their use by early Australian and New Zealand settlers and also the indigenous population. This review provides an overview of the current knowledge of traditional and agronomic uses of Brassicaceae oilseeds and mustards with a focus on their importance in Australia and New Zealand.

Genetic mapping and QTL analysis of agronomic traits in Indian Mucuna pruriens using an intraspecific F₂population.

PubMed

Mahesh, S; Leelambika, M; Jaheer, Md; Anithakumari, A M; Sathyanarayana, N

2016-03-01

Mucuna pruriens is a well-recognized agricultural and horticultural crop with important medicinal use. However, antinutritional factors in seed and adverse morphological characters have negatively affected its cultivation. To elucidate the genetic control of agronomic traits, an intraspecific genetic linkage map of Indian M. pruriens has been developed based on amplified fragment length polymorphism (AFLP) markers using 200 F₂ progenies derived from a cross between wild and cultivated genotypes. The resulting linkage map comprised 129 AFLP markers dispersed over 13 linkage groups spanning a total distance of 618.88 cM with an average marker interval of 4.79 cM. For the first time, three QTLs explaining about 6.05-14.77% of the corresponding total phenotypic variation for three quantitative (seed) traits and, eight QTLs explaining about 25.96% of the corresponding total phenotypic variation for three qualitative traits have been detected on four linkage groups. The map presented here will pave a way for mapping of genes/QTLs for the important agronomic and horticultural traits contrasting between the parents used in this study.

Waterfowl foraging in winter-flooded ricefields: Any agronomic benefits for farmers?

PubMed

Brogi, Anne; Pernollet, Claire A; Gauthier-Clerc, Michel; Guillemain, Matthieu

2015-12-01

Winter-flooding of ricefields provides foraging habitat to waterfowl, which in return may bring agronomic benefits to farmers. Our study experimentally tested the effect of mallards (Anas platyrhynchos) on the standing stalks and weed seed bank in the Camargue (France), both of which present major challenges for farmers. Three duck densities were tested: (D1) 5 ducks ha(-1) (historical nocturnal density), (D2) 23 ducks ha(-1) (present nocturnal density), and (D3) 300 ducks ha(-1) (Asian rice-duck farming density). The ducks reduced the stalks significantly: -27 % (D1), -52 % (D2), and -91 % (D3). Conversely, they decreased the number of seeds by only 3 % (D3) and the seed mass by about 21 % (D1 and D3), which was not significant. Besides they had no effect on seed species richness. This study clearly demonstrates that the winter-flooding effect on straw decomposition can be enhanced by waterfowl foraging, hence showing an agronomic benefit from ducks to farmers. However, there was no clear effect in terms of seed bank reduction.

How agricultural management shapes soil microbial communities: patterns emerging from genetic and genomic studies

NASA Astrophysics Data System (ADS)

Daly, Amanda; Grandy, A. Stuart

2016-04-01

Agriculture is a predominant land use and thus a large influence on global carbon (C) and nitrogen (N) balances, climate, and human health. If we are to produce food, fiber, and fuel sustainably we must maximize agricultural yield while minimizing negative environmental consequences, goals towards which we have made great strides through agronomic advances. However, most agronomic strategies have been designed with a view of soil as a black box, largely ignoring the way management is mediated by soil biota. Because soil microbes play a central role in many of the processes that deliver nutrients to crops and support their health and productivity, agricultural management strategies targeted to exploit or support microbial activity should deliver additional benefits. To do this we must determine how microbial community structure and function are shaped by agricultural practices, but until recently our characterizations of soil microbial communities in agricultural soils have been largely limited to broad taxonomic classes due to methodological constraints. With advances in high-throughput genetic and genomic sequencing techniques, better taxonomic resolution now enables us to determine how agricultural management affects specific microbes and, in turn, nutrient cycling outcomes. Here we unite findings from published research that includes genetic or genomic data about microbial community structure (e.g. 454, Illumina, clone libraries, qPCR) in soils under agricultural management regimes that differ in type and extent of tillage, cropping selections and rotations, inclusion of cover crops, organic amendments, and/or synthetic fertilizer application. We delineate patterns linking agricultural management to microbial diversity, biomass, C- and N-content, and abundance of microbial taxa; furthermore, where available, we compare patterns in microbial communities to patterns in soil extracellular enzyme activities, catabolic profiles, inorganic nitrogen pools, and nitrogen transforming processes. Where genetic data are scarce, we further inform our observations with data from phosopholipid fatty acid, ribosomal intergenic spacer, (terminal) restriction fragment length polymorphism, and denaturing gradient gel electrophoresis analyses. By summarizing the most current information about microbial community structure under different agricultural management strategies, we hope to jumpstart a dialogue that could ultimately inspire novel - and sustainable - agronomic approaches that work with and through soil microbes.

Molecular mapping of QTLs for plant type and earliness traits in pigeonpea (Cajanus cajan L. Millsp.).

PubMed

Kumawat, Giriraj; Raje, Ranjeet S; Bhutani, Shefali; Pal, Jitendra K; Mithra, Amitha S V C R; Gaikwad, Kishor; Sharma, Tilak R; Singh, Nagendra K

2012-10-08

Pigeonpea is an important grain legume of the semi-arid tropics and sub-tropical regions where it plays a crucial role in the food and nutritional security of the people. The average productivity of pigeonpea has remained very low and stagnant for over five decades due to lack of genomic information and intensive breeding efforts. Previous SSR-based linkage maps of pigeonpea used inter-specific crosses due to low inter-varietal polymorphism. Here our aim was to construct a high density intra-specific linkage map using genic-SNP markers for mapping of major quantitative trait loci (QTLs) for key agronomic traits, including plant height, number of primary and secondary branches, number of pods, days to flowering and days to maturity in pigeonpea. A population of 186 F2:3 lines derived from an intra-specific cross between inbred lines 'Pusa Dwarf' and 'HDM04-1' was used to construct a dense molecular linkage map of 296 genic SNP and SSR markers covering a total adjusted map length of 1520.22 cM for the 11 chromosomes of the pigeonpea genome. This is the first dense intra-specific linkage map of pigeonpea with the highest genome length coverage. Phenotypic data from the F2:3 families were used to identify thirteen QTLs for the six agronomic traits. The proportion of phenotypic variance explained by the individual QTLs ranged from 3.18% to 51.4%. Ten of these QTLs were clustered in just two genomic regions, indicating pleiotropic effects or close genetic linkage. In addition to the main effects, significant epistatic interaction effects were detected between the QTLs for number of pods per plant. A large amount of information on transcript sequences, SSR markers and draft genome sequence is now available for pigeonpea. However, there is need to develop high density linkage maps and identify genes/QTLs for important agronomic traits for practical breeding applications. This is the first report on identification of QTLs for plant type and maturity traits in pigeonpea. The QTLs identified in this study provide a strong foundation for further validation and fine mapping for utilization in the pigeonpea improvement.

Optimization and determination of polycyclic aromatic hydrocarbons in biochar-based fertilizers.

PubMed

Chen, Ping; Zhou, Hui; Gan, Jay; Sun, Mingxing; Shang, Guofeng; Liu, Liang; Shen, Guoqing

2015-03-01

The agronomic benefit of biochar has attracted widespread attention to biochar-based fertilizers. However, the inevitable presence of polycyclic aromatic hydrocarbons in biochar is a matter of concern because of the health and ecological risks of these compounds. The strong adsorption of polycyclic aromatic hydrocarbons to biochar complicates their analysis and extraction from biochar-based fertilizers. In this study, we optimized and validated a method for determining the 16 priority polycyclic aromatic hydrocarbons in biochar-based fertilizers. Results showed that accelerated solvent extraction exhibited high extraction efficiency. Based on a Box-Behnken design with a triplicate central point, accelerated solvent extraction was used under the following optimal operational conditions: extraction temperature of 78°C, extraction time of 17 min, and two static cycles. The optimized method was validated by assessing the linearity of analysis, limit of detection, limit of quantification, recovery, and application to real samples. The results showed that the 16 polycyclic aromatic hydrocarbons exhibited good linearity, with a correlation coefficient of 0.996. The limits of detection varied between 0.001 (phenanthrene) and 0.021 mg/g (benzo[ghi]perylene), and the limits of quantification varied between 0.004 (phenanthrene) and 0.069 mg/g (benzo[ghi]perylene). The relative recoveries of the 16 polycyclic aromatic hydrocarbons were 70.26-102.99%. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Strategies for soil-based precision agriculture in cotton

NASA Astrophysics Data System (ADS)

Neely, Haly L.; Morgan, Cristine L. S.; Stanislav, Scott; Rouze, Gregory; Shi, Yeyin; Thomasson, J. Alex; Valasek, John; Olsenholler, Jeff

2016-05-01

The goal of precision agriculture is to increase crop yield while maximizing the use efficiency of farm resources. In this application, UAV-based systems are presenting agricultural researchers with an opportunity to study crop response to environmental and management factors in real-time without disturbing the crop. The spatial variability soil properties, which drive crop yield and quality, cannot be changed and thus keen agronomic choices with soil variability in mind have the potential to increase profits. Additionally, measuring crop stress over time and in response to management and environmental conditions may enable agronomists and plant breeders to make more informed decisions about variety selection than the traditional end-of-season yield and quality measurements. In a previous study, seed-cotton yield was measured over 4 years and compared with soil variability as mapped by a proximal soil sensor. It was found that soil properties had a significant effect on seed-cotton yield and the effect was not consistent across years due to different precipitation conditions. However, when seed-cotton yield was compared to the normalized difference vegetation index (NDVI), as measured using a multispectral camera from a UAV, predictions improved. Further improvement was seen when soil-only pixels were removed from the analysis. On-going studies are using UAV-based data to uncover the thresholds for stress and yield potential. Long-term goals of this research include detecting stress before yield is reduced and selecting better adapted varieties.

Agronomic threshold of soil available phosphorus in grey desert soils in Xinjiang, China

NASA Astrophysics Data System (ADS)

Wang, B.; Liu, H.; Hao, X. Y.; Wang, X. H.; Sun, J. S.; Li, J. M.; Ma, Y. B.

2016-08-01

Based on 23 years of data, yields of maize, wheat and cotton were modelled under different fertilizer management practices and at different levels of available phosphorus (Olsen-P) in soil. Three types of threshold models were used, namely linear-linear (LL), linear- plateau (LP), and Mitscherlich type exponential (Exp). The agronomic thresholds of available phosphorus were 25.4 mgkg-1 for cotton, 14.8 mgkg-1 for wheat, 13.1 mgkg-1 for maize and 25.4 mgkg-1 for the grey desert soil regions of Xinjiang in China as a whole.

Agronomic characterization of the Argentina Indicator Region. [U.S. corn belt and Argentine pampas

NASA Technical Reports Server (NTRS)

Hicks, D. R. (Principal Investigator)

1982-01-01

An overview of the Argentina indicator region including information on topography, climate, soils and vegetation is presented followed by a regionalization of crop livestock land use. Corn/soybean production and exports as well as agricultural practices are discussed. Similarities and differences in the physical agronomic scene, crop livestock land use and agricultural practices between the U.S. corn belt and the Argentine pampa are considered. The Argentine agricultural economy is described. Crop calendars for the Argentina indicator region, an accompanying description, notes on crop-livestock zones, wheat production, field size, and agricultural problems and practices are included.

Row Ratios of Intercropping Maize and Soybean Can Affect Agronomic Efficiency of the System and Subsequent Wheat

PubMed Central

Zhang, Yitao; Liu, Jian; Zhang, Jizong; Liu, Hongbin; Liu, Shen; Zhai, Limei; Wang, Hongyuan; Lei, Qiuliang; Ren, Tianzhi; Yin, Changbin

2015-01-01

Intercropping is regarded as an important agricultural practice to improve crop production and environmental quality in the regions with intensive agricultural production, e.g., northern China. To optimize agronomic advantage of maize (Zea mays L.) and soybean (Glycine max L.) intercropping system compared to monoculture of maize, two sequential experiments were conducted. Experiment 1 was to screening the optimal cropping system in summer that had the highest yields and economic benefits, and Experiment 2 was to identify the optimum row ratio of the intercrops selected from Experiment 1. Results of Experiment 1 showed that maize intercropping with soybean (maize || soybean) was the optimal cropping system in summer. Compared to conventional monoculture of maize, maize || soybean had significant advantage in yield, economy, land utilization ratio and reducing soil nitrate nitrogen (N) accumulation, as well as better residual effect on the subsequent wheat (Triticum aestivum L.) crop. Experiment 2 showed that intercropping systems reduced use of N fertilizer per unit land area and increased relative biomass of intercropped maize, due to promoted photosynthetic efficiency of border rows and N utilization during symbiotic period. Intercropping advantage began to emerge at tasseling stage after N topdressing for maize. Among all treatments with different row ratios, alternating four maize rows with six soybean rows (4M:6S) had the largest land equivalent ratio (1.30), total N accumulation in crops (258 kg ha-1), and economic benefit (3,408 USD ha-1). Compared to maize monoculture, 4M:6S had significantly lower nitrate-N accumulation in soil both after harvest of maize and after harvest of the subsequent wheat, but it did not decrease yield of wheat. The most important advantage of 4M:6S was to increase biomass of intercropped maize and soybean, which further led to the increase of total N accumulation by crops as well as economic benefit. In conclusion, alternating four maize rows with six soybean rows was the optimum row ratio in maize || soybean system, though this needs to be further confirmed by pluri-annual trials. PMID:26061566

Characterization of Agronomy, Grain Physicochemical Quality, and Nutritional Property of High-Lysine 35R Transgenic Rice with Simultaneous Modification of Lysine Biosynthesis and Catabolism.

PubMed

Yang, Qingqing; Wu, Hongyu; Li, Qianfeng; Duan, Ruxu; Zhang, Changquan; Sun, Samuel Saiming; Liu, Qiaoquan

2017-05-31

Lysine is the first limiting essential amino acid in rice. We previously constructed a series of transgenic rice lines to enhance lysine biosynthesis (35S), down-regulate its catabolism (Ri), or simultaneously achieve both metabolic effects (35R). In this study, nine transgenic lines, three from each group, were selected for both field and animal feeding trials. The results showed that the transgene(s) caused no obvious effects on field performance and main agronomic traits. Mature seeds of transgenic line 35R-17 contained 48-60-fold more free lysine than in wild type and had slightly lower apparent amylose content and softer gel consistency. Moreover, a 35-day feeding experiment showed that the body weight gain, food efficiency, and protein efficiency ratio of rats fed the 35R-17 transgenic rice diet were improved when compared with those fed wild-type rice diet. These data will be useful for further evaluation and potential commercialization of 35R high-lysine transgenic rice.

The effectiveness and efficiency of phytoremediation of a multicontaminated industrial site: Porto Marghera (Venice Lagoon, Italy).

PubMed

Guarino, C; Sciarrillo, R

2017-09-01

The Venice Lagoon is worldwide considered as a typical example of the human impact on the surrounding ecosystem. The development of the industrial zone of Porto Marghera begun in 1917 as an extension of the Venice Port, in order to sustain activities related to oil and coal, as well as to exploit the railway system. Despite the recent decrease in the number of employees, Porto Marghera is still one of the most important chemical districts in Italy. This study reports early results from the ongoing in-situ phytoextraction of potentially toxic elements (Cd, Hg, Zn) within the industrial area of Porto Marghera. Two agronomic plant species with high annual biomass yield (Helianthus annuus L., Brassica juncea (L.) Czern.) were used. This paper also reports the microcosms and mesocosms tests to evaluate the efficacy of the treatments to be applied to the in-situ phytoextraction process of the polluted site. The combined use of EDTA and Ammonium Thiosulfate during phytoextraction increases the efficiency of Cd, Hg, Zn removal from contaminated soil. Copyright © 2017 Elsevier Ltd. All rights reserved.

Grain production versus resource and environmental costs: towards increasing sustainability of nutrient use in China.

PubMed

Jiao, Xiaoqiang; Lyu, Yang; Wu, Xiaobin; Li, Haigang; Cheng, Lingyun; Zhang, Chaochun; Yuan, Lixing; Jiang, Rongfeng; Jiang, Baiwen; Rengel, Zed; Zhang, Fusuo; Davies, William J; Shen, Jianbo

2016-09-01

Over the past five decades, Chinese grain production has increased 4-fold, from 110 Mt in 1961 to 557 Mt in 2014, with less than 9% of the world's arable land feeding 22% of the world's population, indicating a substantial contribution to global food security. However, compared with developed economies, such as the USA and the European Union, more than half of the increased crop production in China can be attributed to a rapid increase in the consumption of chemicals, particularly fertilizers. Excessive fertilization has caused low nutrient use efficiency and high environmental costs in grain production. We analysed the key requirements underpinning increased sustainability of crop production in China, as follows: (i) enhance nutrient use efficiency and reduce nutrient losses by fertilizing roots not soil to maximize root/rhizosphere efficiency with innovative root zone nutrient management; (ii) improve crop productivity and resource use efficiency by matching the best agronomic management practices with crop improvement; and (iii) promote technology transfer of the root zone nutrient management to achieve the target of high yields and high efficiency with low environmental risks on a broad scale. Coordinating grain production and environmental protection by increasing the sustainability of nutrient use will be a key step in achieving sustainable crop production in Chinese agriculture. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Agronomic Challenges and Opportunities for Smallholder Terrace Agriculture in Developing Countries.

PubMed

Chapagain, Tejendra; Raizada, Manish N

2017-01-01

Improving land productivity is essential to meet increasing food and forage demands in hillside and mountain communities. Tens of millions of smallholder terrace farmers in Asia, Africa, and Latin America who earn $1-2 per day do not have access to peer-reviewed knowledge of best agronomic practices, though they have considerable traditional ecological knowledge. Terrace farmers also lack access to affordable farm tools and inputs required to increase crop yields. The objectives of this review are to highlight the agronomic challenges of terrace farming, and offer innovative, low-cost solutions to intensify terrace agriculture while improving local livelihoods. The article focuses on smallholder farmers in developing nations, with particular reference to Nepal. The challenges of terrace agriculture in these regions include lack of quality land area for agriculture, erosion and loss of soil fertility, low yield, poor access to agricultural inputs and services, lack of mechanization, labor shortages, poverty, and illiteracy. Agronomic strategies that could help address these concerns include intensification of terraces using agro-ecological approaches along with introduction of light-weight, low-cost, and purchasable tools and affordable inputs that enhance productivity and reduce female drudgery. To package, deliver, and share these technologies with remote hillside communities, effective scaling up models are required. One opportunity to enable distribution of these products could be to "piggy-back" onto pre-existing snackfood/cigarette/alcohol distribution networks that are prevalent even in the most remote mountainous regions of the world. Such strategies, practices, and tools could be supported by formalized government policies dedicated to the well-being of terrace farmers and ecosystems, to maintain resiliency at a time of alarming climate change. We hope this review will inform governments, non-governmental organizations, and the private sector to draw attention to this neglected and vulnerable agro-ecosystem in developing countries.

A highly concentrated diet increases biogas production and the agronomic value of young bull's manure.

PubMed

Mendonça Costa, Mônica Sarolli Silva de; Lucas, Jorge de; Mendonça Costa, Luiz Antonio de; Orrico, Ana Carolina Amorim

2016-02-01

The increasing demand for animal protein has driven significant changes in cattle breeding systems, mainly in feedlots, with the use of young bulls fed on diets richer in concentrate (C) than in forage (F). These changes are likely to affect animal manure, demanding re-evaluation of the biogas production per kg of TS and VS added, as well as of its agronomic value as a biofertilizer, after anaerobic digestion. Here, we determined the biogas production and agronomic value (i.e., the macronutrient concentration in the final biofertilizer) of the manure of young bulls fed on diets with more (80% C+20% F; 'HighC' diet) or less (65% C+35% F; 'LowC' diet) concentrate, evaluating the effects of temperature (25, 35, and 40°C) and the use of an inoculum, during anaerobic digestion. A total of 24 benchtop reactors were used, operating in a semi-continuous system, with a 40-day hydraulic retention time (HRT). The manure from animals given the HighC diet had the greatest potential for biogas production, when digested with the use of an inoculum and at 35 or 40°C (0.6326 and 0.6207m(3)biogas/kg volatile solids, or VS, respectively). We observed the highest levels of the macronutrients N, P, and K in the biofertilizer from the manure of animals given HighC. Our results show that the manure of young bulls achieves its highest potential for biogas production and agronomic value when animals are fed diets richer in concentrate, and that biogas production increases if digestion is performed at higher temperatures, and with the use of an inoculum. Copyright © 2015 Elsevier Ltd. All rights reserved.

Distinct Responses in Ammonia-Oxidizing Archaea and Bacteria after Addition of Biosolids to an Agricultural Soil▿

PubMed Central

Kelly, John J.; Policht, Katherine; Grancharova, Tanya; Hundal, Lakhwinder S.

2011-01-01

The recently discovered ammonia-oxidizing archaea (AOA) have been suggested as contributors to the first step of nitrification in terrestrial ecosystems, a role that was previously assigned exclusively to ammonia-oxidizing bacteria (AOB). The current study assessed the effects of agricultural management, specifically amendment of soil with biosolids or synthetic fertilizer, on nitrification rates and copy numbers of archaeal and bacterial ammonia monooxygenase (amoA) genes. Anaerobically digested biosolids or synthetic fertilizer was applied annually for three consecutive years to field plots used for corn production. Biosolids were applied at two loading rates, a typical agronomic rate (27 Mg hectare−1 year−1) and double the agronomic rate (54 Mg hectare−1 year−1), while synthetic fertilizer was applied at an agronomic rate typical for the region (291 kg N hectare−1 year−1). Both biosolids amendments and synthetic fertilizer increased soil N and corn yield, but only the biosolids amendments resulted in significant increases in nitrification rates and increases in the copy numbers of archaeal and bacterial amoA genes. In addition, only archaeal amoA gene copy numbers increased in response to biosolids applied at the typical agronomic rate and showed a significant correlation with nitrification rates. Finally, copy numbers of archaeal amoA genes were significantly higher than copy numbers of bacterial amoA genes for all treatments. These results implicate AOA as being primarily responsible for the increased nitrification observed in an agricultural soil amended with biosolids. These results also support the hypothesis that physiological differences between AOA and AOB may enable them to occupy distinct ecological niches. PMID:21803892

Selenium speciation profiles in biofortified sangiovese wine.

PubMed

Fontanella, Maria Chiara; D'Amato, Roberto; Regni, Luca; Proietti, Primo; Beone, Gian Maria; Businelli, Daniela

2017-09-01

Biofortification is an agronomic-based strategy, utilized by farmers, to produce selenium (Se)-enriched food products that may help reduce dietary deficiencies of Se occurring throughout susceptible regions of the world. The foliar exposure route application ensures a high efficiency of Se assimilation by the plant since it does not depend on root-to-shoot translocation. In this study we treated grapevines of Sangiovese variety in the pre-flowering period with sodium selenate (100mg Se L -1 ). Se content was measured in leaves, fruit at harvest time and in wine respectively in treated and not treated samples with ICP-MS. At harvest, a higher amount of Se in the treated leaves compared to untreated ones was found, 16.0±3.1mgkg -1 dry weight (dw) against 0.17±0.006mgkg -1 dw in the untreated ones. The treated grapes had a content of Se of 0.800±0.08mgkg -1 dw, while that untreated one 0.065±0.025mgkg -1 dw. Immediately after the malolactic fermentation, the wine obtained from treated and untreated vines had a Se content of 0.620±0.09mg Se L -1 and 0.024±0.010mg Se L -1 respectively. In our case the percentage of inorganic Se is 26% of the total Se in the untreated wine, while in Se enriched wine this percentage increase to 47.5% of the total Se. The Se(VI) was the inorganic chemical form more present in enriched wine, probably due to foliar application with selenate. Distributions of Se species suggested being careful to the choice of the enrichment solutions to promote a balanced distribution of different chemical forms, perhaps favouring the accumulation of organic forms. Copyright © 2016 Elsevier GmbH. All rights reserved.

Rainwater harvesting and management in rainfed agricultural systems in sub-Saharan Africa - A review

NASA Astrophysics Data System (ADS)

Biazin, Birhanu; Sterk, Geert; Temesgen, Melesse; Abdulkedir, Abdu; Stroosnijder, Leo

Agricultural water scarcity in the predominantly rainfed agricultural system of sub-Saharan Africa (SSA) is more related to the variability of rainfall and excessive non-productive losses, than the total annual precipitation in the growing season. Less than 15% of the terrestrial precipitation takes the form of productive ‘green’ transpiration. Hence, rainwater harvesting and management (RWHM) technologies hold a significant potential for improving rainwater-use efficiency and sustaining rainfed agriculture in the region. This paper outlines the various RWHM techniques being practiced in SSA, and reviews recent research results on the performance of selected practices. So far, micro-catchment and in situ rainwater harvesting techniques are more common than rainwater irrigation techniques from macro-catchment systems. Depending on rainfall patterns and local soil characteristics, appropriate application of in situ and micro-catchment techniques could improve the soil water content of the rooting zone by up to 30%. Up to sixfold crop yields have been obtained through combinations of rainwater harvesting and fertiliser use, as compared to traditional practices. Supplemental irrigation of rainfed agriculture through rainwater harvesting not only reduces the risk of total crop failure due to dry spells, but also substantially improves water and crop productivity. Depending on the type of crop and the seasonal rainfall pattern, the application of RWHM techniques makes net profits more possible, compared to the meagre profit or net loss of existing systems. Implementation of rainwater harvesting may allow cereal-based smallholder farmers to shift to diversified crops, hence improving household food security, dietary status, and economic return. The much needed green revolution and adaptations to climate change in SSA should blend rainwater harvesting ideals with agronomic principles. More efforts are needed to improve the indigenous practices, and to disseminate best practices on a wider scale.

Dynamic Model Improves Agronomic and Environmental Outcomes for Maize Nitrogen Management over Static Approach.

PubMed

Sela, Shai; van Es, Harold M; Moebius-Clune, Bianca N; Marjerison, Rebecca; Moebius-Clune, Daniel; Schindelbeck, Robert; Severson, Keith; Young, Eric

2017-03-01

Large temporal and spatial variability in soil nitrogen (N) availability leads many farmers across the United States to over-apply N fertilizers in maize ( L.) production environments, often resulting in large environmental N losses. Static Stanford-type N recommendation tools are typically promoted in the United States, but new dynamic model-based decision tools allow for highly adaptive N recommendations that account for specific production environments and conditions. This study compares the Corn N Calculator (CNC), a static N recommendation tool for New York, to Adapt-N, a dynamic simulation tool that combines soil, crop, and management information with real-time weather data to estimate optimum N application rates for maize. The efficiency of the two tools in predicting the Economically Optimum N Rate (EONR) is compared using field data from 14 multiple N-rate trials conducted in New York during the years 2011 through 2015. The CNC tool was used with both realistic grower-estimated potential yields and those extracted from the CNC default database, which were found to be unrealistically low when compared with field data. By accounting for weather and site-specific conditions, the Adapt-N tool was found to increase the farmer profits and significantly improve the prediction of the EONR (RMSE = 34 kg ha). Furthermore, using a dynamic instead of a static approach led to reduced N application rates, which in turn resulted in substantially lower simulated environmental N losses. This study shows that better N management through a dynamic decision tool such as Adapt-N can help reduce environmental impacts while sustaining farm economic viability. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Review of remediation practices regarding cadmium-enriched farmland soil with particular reference to China.

PubMed

Tang, X; Li, Q; Wu, M; Lin, L; Scholz, M

2016-10-01

Cadmium-enrichment of farmland soil greatly threatens the sustainable use of soil resources and the safe cultivation of grain. This review paper briefly introduces the status of farmland soil as well as grain, which are both often polluted by cadmium (Cd) in China, and illustrates the major sources of Cd contaminants in farmland soil. In order to meet soil environmental quality standards and farmland environmental quality evaluation standards for edible agricultural products, Cd-enriched farmland soil is frequently remediated with the following prevailing techniques: dig and fill, electro-kinetic remediation, chemical elution, stabilisation and solidification, phytoremediation, field management and combined remediation. Most remediation techniques are still at the stage of small-scale trial experiments in China and few techniques are assessed in field trials. After comparing the technical and economical applicability among different Cd-enriched farmland soil remediation techniques, a novel ecological and hydraulic remediation technique has been proposed, which integrated the advantages of chemical elution, solidification and stabilisation, phytoremediation and field management. The ecological and hydraulic remediation concept is based on existing irrigation and drainage facilities, ecological ditches (ponds) and agronomic measures, which mainly detoxify the Cd-enriched soil during the interim period of crop cultivation, and guarantee the grain safety during its growth period. This technique may shift the challenge from soil to water treatment, and thus greatly enhances the remediation efficiency and shortens the remediation duration. Moreover, the proposed ecological and hydraulic remediation method matches well with the practical choice of cultivation while remediation for Cd-enriched soil in China, which has negligible impacts on the normal crop cultivation process, and thus shows great potential for large area applications. Copyright © 2016 Elsevier Ltd. All rights reserved.

Genomic-based-breeding tools for tropical maize improvement.

PubMed

Chakradhar, Thammineni; Hindu, Vemuri; Reddy, Palakolanu Sudhakar

2017-12-01

Maize has traditionally been the main staple diet in the Southern Asia and Sub-Saharan Africa and widely grown by millions of resource poor small scale farmers. Approximately, 35.4 million hectares are sown to tropical maize, constituting around 59% of the developing worlds. Tropical maize encounters tremendous challenges besides poor agro-climatic situations with average yields recorded <3 tones/hectare that is far less than the average of developed countries. On the contrary to poor yields, the demand for maize as food, feed, and fuel is continuously increasing in these regions. Heterosis breeding introduced in early 90 s improved maize yields significantly, but genetic gains is still a mirage, particularly for crop growing under marginal environments. Application of molecular markers has accelerated the pace of maize breeding to some extent. The availability of array of sequencing and genotyping technologies offers unrivalled service to improve precision in maize-breeding programs through modern approaches such as genomic selection, genome-wide association studies, bulk segregant analysis-based sequencing approaches, etc. Superior alleles underlying complex traits can easily be identified and introgressed efficiently using these sequence-based approaches. Integration of genomic tools and techniques with advanced genetic resources such as nested association mapping and backcross nested association mapping could certainly address the genetic issues in maize improvement programs in developing countries. Huge diversity in tropical maize and its inherent capacity for doubled haploid technology offers advantage to apply the next generation genomic tools for accelerating production in marginal environments of tropical and subtropical world. Precision in phenotyping is the key for success of any molecular-breeding approach. This article reviews genomic technologies and their application to improve agronomic traits in tropical maize breeding has been reviewed in detail.

High throughput selection of novel plant growth regulators: Assessing the translatability of small bioactive molecules from Arabidopsis to crops.

PubMed

Rodriguez-Furlán, Cecilia; Miranda, Giovanna; Reggiardo, Martín; Hicks, Glenn R; Norambuena, Lorena

2016-04-01

Plant growth regulators (PGRs) have become an integral part of agricultural and horticultural practices. Accordingly, there is an increased demand for new and cost-effective products. Nevertheless, the market is limited by insufficient innovation. In this context chemical genomics has gained increasing attention as a powerful approach addressing specific traits. Here is described the successful implementation of a highly specific, sensitive and efficient high throughput screening approach using Arabidopsis as a model. Using a combination of techniques, 10,000 diverse compounds were screened and evaluated for several important plant growth traits including root and leaf growth. The phenotype-based selection allowed the compilation of a collection of putative Arabidopsis growth regulators with a broad range of activities and specificities. A subset was selected for evaluating their bioactivity in agronomically valuable plants. Their validation as growth regulators in commercial species such as tomato, lettuce, carrot, maize and turfgrasses reinforced the success of the screening in Arabidopsis and indicated that small molecules activity can be efficiently translated to commercial species. Therefore, the chemical genomics approach in Arabidopsis is a promising field that can be incorporated in PGR discovery programs and has a great potential to develop new products that can be efficiently used in crops. Copyright © 2016. Published by Elsevier Ireland Ltd.

Ectopic expression of Arabidopsis Target of Rapamycin (AtTOR) improves water-use efficiency and yield potential in rice

NASA Astrophysics Data System (ADS)

Bakshi, Achala; Moin, Mazahar; Kumar, M. Udaya; Reddy, Aramati Bindu Madhava; Ren, Maozhi; Datla, Raju; Siddiq, E. A.; Kirti, P. B.

2017-02-01

The target of Rapamycin (TOR) present in all eukaryotes is a multifunctional protein, regulating growth, development, protein translation, ribosome biogenesis, nutrient, and energy signaling. In the present study, ectopic expression of TOR gene of Arabidopsis thaliana in a widely cultivated indica rice resulted in enhanced plant growth under water-limiting conditions conferring agronomically important water-use efficiency (WUE) trait. The AtTOR high expression lines of rice exhibited profuse tillering, increased panicle length, increased plant height, high photosynthetic efficiency, chlorophyll content and low Δ13C. Δ13C, which is inversely related to high WUE, was as low as 17‰ in two AtTOR high expression lines. These lines were also insensitive to the ABA-mediated inhibition of seed germination. The significant upregulation of 15 stress-specific genes in high expression lines indicates their contribution to abiotic stress tolerance. The constitutive expression of AtTOR is also associated with significant transcriptional upregulation of putative TOR complex-1 components, OsRaptor and OsLST8. Glucose-mediated transcriptional activation of AtTOR gene enhanced lateral root formation. Taken together, our findings indicate that TOR, in addition to its multiple cellular functions, also plays an important role in response to abiotic stress and potentially enhances WUE and yield related attributes.

Agronomic effect of empty fruit bunches compost, anorganic fertilizer and endophytic microbes in oil palm main nursery used Ganoderma endemic soil

NASA Astrophysics Data System (ADS)

Hanum, H.; Lisnawita; Tantawi, A. R.

2018-02-01

Using of Ganoderma endemic soil in oil palm main nursery is not recomended because produce bad quality seedling. The application of organic and anorganic fertilizer and endophytic microbes are the alternative for solving the problem. The objective of this research is to evaluate the effect of empty fruit bunches compost, anorganic fertilizer and endophytic microbes on growth of oil palm seedling in main nursery. This research used factorial randomized block design. The first factor was combination of empty fruit bunches compost and anorganic fertilizer, The second factor was endophytic microbes consisting of Trichoderma and Aspergillus. The results showed that interaction effect of the both treatment factor used increased growth of seedling in third and fourth month after application. The best growth of seedling was on the treatment of empty fruit bunches compost combined with anorganic fertilizer 150% recommended dosage and Trichoderma viride.

Camera sensor arrangement for crop/weed detection accuracy in agronomic images.

PubMed

Romeo, Juan; Guerrero, José Miguel; Montalvo, Martín; Emmi, Luis; Guijarro, María; Gonzalez-de-Santos, Pablo; Pajares, Gonzalo

2013-04-02

In Precision Agriculture, images coming from camera-based sensors are commonly used for weed identification and crop line detection, either to apply specific treatments or for vehicle guidance purposes. Accuracy of identification and detection is an important issue to be addressed in image processing. There are two main types of parameters affecting the accuracy of the images, namely: (a) extrinsic, related to the sensor's positioning in the tractor; (b) intrinsic, related to the sensor specifications, such as CCD resolution, focal length or iris aperture, among others. Moreover, in agricultural applications, the uncontrolled illumination, existing in outdoor environments, is also an important factor affecting the image accuracy. This paper is exclusively focused on two main issues, always with the goal to achieve the highest image accuracy in Precision Agriculture applications, making the following two main contributions: (a) camera sensor arrangement, to adjust extrinsic parameters and (b) design of strategies for controlling the adverse illumination effects.

Emergent Imaging and Geospatial Technologies for Soil Investigations

NASA Technical Reports Server (NTRS)

DeGloria, Stephen D.; Beaudette, Dylan E.; Irons, James R.; Libohova, Zamir; O'Neill, Peggy E.; Owens, Phillip R.; Schoeneberger, Philip J.; West, Larry T.; Wysocki, Douglas A.

2014-01-01

Soil survey investigations and inventories form the scientific basis for a wide spectrum of agronomic and environmental management programs. Soil data and information help formulate resource conservation policies of federal, state, and local governments that seek to sustain our agricultural production system while enhancing environmental quality on both public and private lands. The dual challenges of increasing agricultural production and ensuring environmental integrity require electronically available soil inventory data with both spatial and attribute quality. Meeting this societal need in part depends on development and evaluation of new methods for updating and maintaining soil inventories for sophisticated applications, and implementing an effective framework to conceptualize and communicate tacit knowledge from soil scientists to numerous stakeholders.

Rice functional genomics research in China.

PubMed

Han, Bin; Xue, Yongbiao; Li, Jiayang; Deng, Xing-Wang; Zhang, Qifa

2007-06-29

Rice functional genomics is a scientific approach that seeks to identify and define the function of rice genes, and uncover when and how genes work together to produce phenotypic traits. Rapid progress in rice genome sequencing has facilitated research in rice functional genomics in China. The Ministry of Science and Technology of China has funded two major rice functional genomics research programmes for building up the infrastructures of the functional genomics study such as developing rice functional genomics tools and resources. The programmes were also aimed at cloning and functional analyses of a number of genes controlling important agronomic traits from rice. National and international collaborations on rice functional genomics study are accelerating rice gene discovery and application.

Penetrative trace fossils from the late Ediacaran of Mongolia: early onset of the agronomic revolution.

PubMed

Oji, Tatsuo; Dornbos, Stephen Q; Yada, Keigo; Hasegawa, Hitoshi; Gonchigdorj, Sersmaa; Mochizuki, Takafumi; Takayanagi, Hideko; Iryu, Yasufumi

2018-02-01

The Cambrian radiation of complex animals includes a dramatic increase in the depth and intensity of bioturbation in seafloor sediment known as the 'agronomic revolution'. This bioturbation transition was coupled with a shift in dominant trace fossil style from horizontal surficial traces in the late Precambrian to vertically penetrative trace fossils in the Cambrian. Here we show the existence of the first vertically penetrative trace fossils from the latest Ediacaran: dense occurrences of the U-shaped trace fossil Arenicolites from late Precambrian marine carbonates of Western Mongolia. Their Ediacaran age is established through stable carbon isotope chemostratigraphy and their occurrence stratigraphically below the first appearance of the trace fossil Treptichnus pedum . These Arenicolites are large in diameter, penetrate down to at least 4 cm into the sediment, and were presumably formed by the activity of bilaterian animals. They are preserved commonly as paired circular openings on bedding planes with maximum diameters ranging up to almost 1 cm, and as U- and J-shaped tubes in vertical sections of beds. Discovery of these complex penetrative trace fossils demonstrates that the agronomic revolution started earlier than previously considered.

Penetrative trace fossils from the late Ediacaran of Mongolia: early onset of the agronomic revolution

PubMed Central

Dornbos, Stephen Q.; Yada, Keigo; Hasegawa, Hitoshi; Gonchigdorj, Sersmaa; Mochizuki, Takafumi; Takayanagi, Hideko; Iryu, Yasufumi

2018-01-01

The Cambrian radiation of complex animals includes a dramatic increase in the depth and intensity of bioturbation in seafloor sediment known as the ‘agronomic revolution’. This bioturbation transition was coupled with a shift in dominant trace fossil style from horizontal surficial traces in the late Precambrian to vertically penetrative trace fossils in the Cambrian. Here we show the existence of the first vertically penetrative trace fossils from the latest Ediacaran: dense occurrences of the U-shaped trace fossil Arenicolites from late Precambrian marine carbonates of Western Mongolia. Their Ediacaran age is established through stable carbon isotope chemostratigraphy and their occurrence stratigraphically below the first appearance of the trace fossil Treptichnus pedum. These Arenicolites are large in diameter, penetrate down to at least 4 cm into the sediment, and were presumably formed by the activity of bilaterian animals. They are preserved commonly as paired circular openings on bedding planes with maximum diameters ranging up to almost 1 cm, and as U- and J-shaped tubes in vertical sections of beds. Discovery of these complex penetrative trace fossils demonstrates that the agronomic revolution started earlier than previously considered. PMID:29515908

Agronomic Biofortification of Amaranthus dubius with Macro Nutrients and Vitamin A

NASA Astrophysics Data System (ADS)

Mala, R.; Celsia, A. S. Ruby; Mahalakshmi, R.; Rajeswari, S.

2017-08-01

Agronomic biofortification of Amaranthus dubius with carbohydrates, proteins and Vitamin A using Spirulina platensis is reported in the present preliminary study. S. platensis was applied basally to field and its influence on germination, concentration of proteins, carbohydrates, chlorophyll, carotenoids and antioxidant activity of leaves were assessed in CO1 variety of A. dubius. Biofortification of the nutrients were evaluated on 5th and 20th day. Germination was optimum at 0.005 % of S. platensis as a fertilizer and the agronomic fortifying agent. Germination in control was 82 % and 95 % in 0.005 % of S. platensis fortification. The concentration of total chlorophyll in control and biofortified leaf on 20th day were 85.6 mg/g and 325 mg/g of dried leaf. The concentration of proteins was 71.93 mg/g and 450 mg/g on 20th day in control and fortified leaves. S. platensis applied field produced leaves fortified with 1.27 % of vitamin A aldehyde. Antioxidant activity of control leaf was 34.85 % and it was significantly increased in fortified leaves to 87 %. Thus the study confirms the fortification of leaf with proteins, carbohydrates and vitamin A.

Comprehensive review on agro technologies of low-calorie natural sweetener stevia (Stevia rebaudiana Bertoni): a boon to diabetic patients.

PubMed

Sharma, Saurabh; Walia, Swati; Singh, Bikram; Kumar, Rakesh

2016-04-01

Stevia rebaudiana Bertoni is a low-calorie natural sweetener plant native to Paraguay. The leaves of stevia have sweetening compounds called steviol glycosides (SGs), which contain different marker compounds, i.e. stevioside (St), rebaudioside (Rb) A, B, C, D and E, dulcoside A and steviol biosides, which are nearly 300 times sweeter than sugar. Stevia is a better alternative to sugar in formulating food products, reducing the harmful effect of sugar and improving the nutrient properties. We have tried to compile a literature on various agronomic and management aspects which are helpful in increasing the yield and quality of stevia to be grown as a crop that will benefit farmers and industrialists. The stevioside thus obtained can be used to make different food products for sweetening purposes, which could be a boon to diabetic patients. Incorporation of different agronomic techniques like propagation method, transplanting time, intercropping, irrigation, mulching, plant geometry, pinching and harvesting time not only improve the biomass but also increase the quality of stevia. Therefore, agronomic considerations are of high priority to utilize its maximum potential. © 2015 Society of Chemical Industry. © 2015 Society of Chemical Industry.

Penetrative trace fossils from the late Ediacaran of Mongolia: early onset of the agronomic revolution

NASA Astrophysics Data System (ADS)

Oji, Tatsuo; Dornbos, Stephen Q.; Yada, Keigo; Hasegawa, Hitoshi; Gonchigdorj, Sersmaa; Mochizuki, Takafumi; Takayanagi, Hideko; Iryu, Yasufumi

2018-02-01

The Cambrian radiation of complex animals includes a dramatic increase in the depth and intensity of bioturbation in seafloor sediment known as the `agronomic revolution'. This bioturbation transition was coupled with a shift in dominant trace fossil style from horizontal surficial traces in the late Precambrian to vertically penetrative trace fossils in the Cambrian. Here we show the existence of the first vertically penetrative trace fossils from the latest Ediacaran: dense occurrences of the U-shaped trace fossil Arenicolites from late Precambrian marine carbonates of Western Mongolia. Their Ediacaran age is established through stable carbon isotope chemostratigraphy and their occurrence stratigraphically below the first appearance of the trace fossil Treptichnus pedum. These Arenicolites are large in diameter, penetrate down to at least 4 cm into the sediment, and were presumably formed by the activity of bilaterian animals. They are preserved commonly as paired circular openings on bedding planes with maximum diameters ranging up to almost 1 cm, and as U- and J-shaped tubes in vertical sections of beds. Discovery of these complex penetrative trace fossils demonstrates that the agronomic revolution started earlier than previously considered.

[An ADAA model and its analysis method for agronomic traits based on the double-cross mating design].

PubMed

Xu, Z C; Zhu, J

2000-01-01

According to the double-cross mating design and using principles of Cockerham's general genetic model, a genetic model with additive, dominance and epistatic effects (ADAA model) was proposed for the analysis of agronomic traits. Components of genetic effects were derived for different generations. Monte Carlo simulation was conducted for analyzing the ADAA model and its reduced AD model by using different generations. It was indicated that genetic variance components could be estimated without bias by MINQUE(1) method and genetic effects could be predicted effectively by AUP method; at least three generations (including parent, F1 of single cross and F1 of double-cross) were necessary for analyzing the ADAA model and only two generations (including parent and F1 of double-cross) were enough for the reduced AD model. When epistatic effects were taken into account, a new approach for predicting the heterosis of agronomic traits of double-crosses was given on the basis of unbiased prediction of genotypic merits of parents and their crosses. In addition, genotype x environment interaction effects and interaction heterosis due to G x E interaction were discussed briefly.

LC-MS phenolic profiling combined with multivariate analysis as an approach for the characterization of extra virgin olive oils of four rare Tunisian cultivars during ripening.

PubMed

Ben Brahim, Samia; Kelebek, Hasim; Ammar, Sonda; Abichou, Mounir; Bouaziz, Mohamed

2017-08-15

In this work, the phenolic composition of four rare cultivars grown under the same agronomical and environmental conditions was studied. This is to test the effects of cultivars and ripening index essentially on phenolic composition in olive oils as well as tocopherols composition, organoleptic profiling and oxidative properties. Furthermore, some agronomical traits were determined in which a general increase in the size of the fruit and oil contents were recorded for all cultivars. The phenolic fractions were identified and quantified using liquid chromatography coupled to diode array detection and electrospray ionization tandem mass spectrometry (LC-DAD-ESI-MS/MS) in multiple reaction monitoring mode (MRM). A total of 13 phenolic compounds belonging to different chemical families were determined. Qualitative and quantitative differences in phenolic composition were observed among cultivars and also among sampling times. On the contrary to the agronomical traits, a general decrease (p<0.05) of total phenolic compounds was observed during maturation. Likewise, a decrease in tocopherols concentrations and oxidative properties was observed. Copyright © 2017 Elsevier Ltd. All rights reserved.

Quantification of trans-1,4-polyisoprene in Eucommia ulmoides by fourier transform infrared spectroscopy and pyrolysis-gas chromatography/mass spectrometry.

PubMed

Takeno, Shinya; Bamba, Takeshi; Nakazawa, Yoshihisa; Fukusaki, Eiichiro; Okazawa, Atsushi; Kobayashi, Akio

2008-04-01

Commercial development of trans-1,4-polyisoprene from Eucommia ulmoides Oliver (EU-rubber) requires specific knowledge on selection of high-rubber-content lines and establishment of agronomic cultivation methods for achieving maximum EU-rubber yield. The development can be facilitated by high-throughput and highly sensitive analytical techniques for EU-rubber extraction and quantification. In this paper, we described an efficient EU-rubber extraction method, and validated that the accuracy was equivalent to that of the conventional Soxhlet extraction method. We also described a highly sensitive quantification method for EU-rubber by Fourier transform infrared spectroscopy (FT-IR) and pyrolysis-gas chromatography/mass spectrometry (PyGC/MS). We successfully applied the extraction/quantification method for study of seasonal changes in EU-rubber content and molecular weight distribution.

Rapid generation of genetic diversity by multiplex CRISPR/Cas9 genome editing in rice.

PubMed

Shen, Lan; Hua, Yufeng; Fu, Yaping; Li, Jian; Liu, Qing; Jiao, Xiaozhen; Xin, Gaowei; Wang, Junjie; Wang, Xingchun; Yan, Changjie; Wang, Kejian

2017-05-01

The clustered regularly interspaced short palindromic repeats (CRISPR)-associated endonuclease 9 (CRISPR/Cas9) system has emerged as a promising technology for specific genome editing in many species. Here we constructed one vector targeting eight agronomic genes in rice using the CRISPR/Cas9 multiplex genome editing system. By subsequent genetic transformation and DNA sequencing, we found that the eight target genes have high mutation efficiencies in the T 0 generation. Both heterozygous and homozygous mutations of all editing genes were obtained in T 0 plants. In addition, homozygous sextuple, septuple, and octuple mutants were identified. As the abundant genotypes in T 0 transgenic plants, various phenotypes related to the editing genes were observed. The findings demonstrate the potential of the CRISPR/Cas9 system for rapid introduction of genetic diversity during crop breeding.

Assembly of the draft genome of buckwheat and its applications in identifying agronomically useful genes.

PubMed

Yasui, Yasuo; Hirakawa, Hideki; Ueno, Mariko; Matsui, Katsuhiro; Katsube-Tanaka, Tomoyuki; Yang, Soo Jung; Aii, Jotaro; Sato, Shingo; Mori, Masashi

2016-06-01

Buckwheat (Fagopyrum esculentum Moench; 2n = 2x = 16) is a nutritionally dense annual crop widely grown in temperate zones. To accelerate molecular breeding programmes of this important crop, we generated a draft assembly of the buckwheat genome using short reads obtained by next-generation sequencing (NGS), and constructed the Buckwheat Genome DataBase. After assembling short reads, we determined 387,594 scaffolds as the draft genome sequence (FES_r1.0). The total length of FES_r1.0 was 1,177,687,305 bp, and the N50 of the scaffolds was 25,109 bp. Gene prediction analysis revealed 286,768 coding sequences (CDSs; FES_r1.0_cds) including those related to transposable elements. The total length of FES_r1.0_cds was 212,917,911 bp, and the N50 was 1,101 bp. Of these, the functions of 35,816 CDSs excluding those for transposable elements were annotated by BLAST analysis. To demonstrate the utility of the database, we conducted several test analyses using BLAST and keyword searches. Furthermore, we used the draft genome as a reference sequence for NGS-based markers, and successfully identified novel candidate genes controlling heteromorphic self-incompatibility of buckwheat. The database and draft genome sequence provide a valuable resource that can be used in efforts to develop buckwheat cultivars with superior agronomic traits. © The Author 2016. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea

PubMed Central

Kujur, Alice; Upadhyaya, Hari D.; Shree, Tanima; Bajaj, Deepak; Das, Shouvik; Saxena, Maneesha S.; Badoni, Saurabh; Kumar, Vinod; Tripathi, Shailesh; Gowda, C. L. L.; Sharma, Shivali; Singh, Sube; Tyagi, Akhilesh K.; Parida, Swarup K.

2015-01-01

We discovered 26785 and 16573 high-quality SNPs differentiating two parental genotypes of a RIL mapping population using reference desi and kabuli genome-based GBS assay. Of these, 3625 and 2177 SNPs have been integrated into eight desi and kabuli chromosomes, respectively in order to construct ultra-high density (0.20–0.37 cM) intra-specific chickpea genetic linkage maps. One of these constructed high-resolution genetic map has potential to identify 33 major genomic regions harbouring 35 robust QTLs (PVE: 17.9–39.7%) associated with three agronomic traits, which were mapped within <1 cM mean marker intervals on desi chromosomes. The extended LD (linkage disequilibrium) decay (~15 cM) in chromosomes of genetic maps have encouraged us to use a rapid integrated approach (comparative QTL mapping, QTL-region specific haplotype/LD-based trait association analysis, expression profiling and gene haplotype-based association mapping) rather than a traditional QTL map-based cloning method to narrow-down one major seed weight (SW) robust QTL region. It delineated favourable natural allelic variants and superior haplotype-containing one seed-specific candidate embryo defective gene regulating SW in chickpea. The ultra-high-resolution genetic maps, QTLs/genes and alleles/haplotypes-related genomic information generated and integrated strategy for rapid QTL/gene identification developed have potential to expedite genomics-assisted breeding applications in crop plants, including chickpea for their genetic enhancement. PMID:25942004

Ammonia volatilization and atmospheric N deposition following straw and urea application from a rice-wheat rotation in southeastern China

NASA Astrophysics Data System (ADS)

Sun, Liying; Wu, Zhen; Ma, Yuchun; Liu, Yinglie; Xiong, Zhengqin

2018-05-01

Ammonia is a vital component of the nitrogen (N) cycle of terrestrial ecosystems in terms of volatilization and deposition. Here, a field experiment was undertaken to simultaneously investigate the effects of rice straw and urea incorporation on ammonia volatilization, atmospheric N deposition, yields and agronomic nitrogen use efficiency (NUE) under a rice-wheat system in China. The experiment involved four treatments: control (0 N, 0 straw), NS0 (250 kg N ha-1 season-1, 0 straw), NS1 (250 kg N ha-1 season-1, 3 t ha-1 yr-1 straw), and NS2 (250 kg N ha-1 season-1, 6 t ha-1 yr-1 straw) in the rice-wheat annual rotation system. The results indicated that the NS0, NS1 and NS2 treatments emitted cumulative ammonia of 14.0%, 16.4%, and 19.2%, respectively in the rice season and 7.6%, 11.1%, and 12.3%, respectively in the wheat season among the total urea-N application. Compared to the NS0 treatment, the NS1 and NS2 treatments significantly increased the cumulative ammonia emissions by 15.5% (p < 0.05) and 33.5% (p < 0.05), respectively in the rice season and 39.9% (p < 0.05) and 53.1% (p < 0.05), respectively in the wheat season. There was no significant difference between the NS2 and NS1 treatments during the wheat season. The amount of NH4+-N deposition accounted for 56.1% of the total inorganic N deposition during the whole rice-wheat system. The bulk NH4+-N deposition during the period of fertilization contributed 73.9% and 5.7% to the total NH4+-N deposition in the rice and wheat season, respectively. Overall, straw incorporation increased ammonia volatilization, not affecting the crop grain yield or NUE. The seasonal variation in NH4+-N bulk deposition was closely related to N fertilizer application.

Effects of variety, cropping year, location and fertilizer application on nutritive value of durum wheat straw.

PubMed

Tolera, A; Tsegaye, B; Berg, T

2008-04-01

This study was carried out to assess the effects of variety, year, location and level of fertilizer application on chemical composition and in sacco dry matter (DM) degradability of durum wheat straw as well as to understand the relationship between straw quality and agronomic traits of the crop and to assess the possibilities of selecting wheat varieties that combine high grain yield with desirable straw quality. Two local (Arendeto and Tikur sinde) and two improved (Boohai and Gerardo) varieties of durum wheat (Triticum turgidum Desf.) were used in the experiment. The four varieties were grown at two locations (Akaki and Ejere) in the years 2001/2002 and 2002/2003 in 5 x 5 m plots in three replications. Diammonium phosphate and urea fertilizers were applied at four levels (0/0, 32/23, 41/23 and 64/46 kg/ha of nitrogen/phosphorus). Straw quality was assessed based on chemical composition and in sacco DM degradability. Correlation of straw quality with grain and straw yield and with other agronomic characteristics of the crop was determined. The potential utility index (a measure that integrates grain and digestible straw yield) was used for ranking of the varieties. The local varieties had higher crude protein (CP) and lower neutral detergent fibre contents and higher digestibility than the improved varieties. The cropping year and location had significant effect on CP content and degradability of the straw, which could be due to climatic variation. However, the fertilizer level did not have any significant effect on straw quality except that the CP content of the straw tended to increase with increasing level of fertilizer application. Based on the potential utility index the varieties ranked, in a decreasing order, as Tikur sinde > Arendeto > Gerardo > Boohai and the ranking was consistent across years and locations. Except the CP content, straw quality was not negatively correlated with grain and straw yield. This indicates that there is a possibility of selecting varieties of wheat that combine high grain and straw yield with desirable straw quality.

Beyond Genomic Prediction: Combining Different Types of omics Data Can Improve Prediction of Hybrid Performance in Maize.

PubMed

Schrag, Tobias A; Westhues, Matthias; Schipprack, Wolfgang; Seifert, Felix; Thiemann, Alexander; Scholten, Stefan; Melchinger, Albrecht E

2018-04-01

The ability to predict the agronomic performance of single-crosses with high precision is essential for selecting superior candidates for hybrid breeding. With recent technological advances, thousands of new parent lines, and, consequently, millions of new hybrid combinations are possible in each breeding cycle, yet only a few hundred can be produced and phenotyped in multi-environment yield trials. Well established prediction approaches such as best linear unbiased prediction (BLUP) using pedigree data and whole-genome prediction using genomic data are limited in capturing epistasis and interactions occurring within and among downstream biological strata such as transcriptome and metabolome. Because mRNA and small RNA (sRNA) sequences are involved in transcriptional, translational and post-translational processes, we expect them to provide information influencing several biological strata. However, using sRNA data of parent lines to predict hybrid performance has not yet been addressed. Here, we gathered genomic, transcriptomic (mRNA and sRNA) and metabolomic data of parent lines to evaluate the ability of the data to predict the performance of untested hybrids for important agronomic traits in grain maize. We found a considerable interaction for predictive ability between predictor and trait, with mRNA data being a superior predictor for grain yield and genomic data for grain dry matter content, while sRNA performed relatively poorly for both traits. Combining mRNA and genomic data as predictors resulted in high predictive abilities across both traits and combining other predictors improved prediction over that of the individual predictors alone. We conclude that downstream "omics" can complement genomics for hybrid prediction, and, thereby, contribute to more efficient selection of hybrid candidates. Copyright © 2018 by the Genetics Society of America.

Water and soil conservation for food security in Niger and its constraints for adoption

NASA Astrophysics Data System (ADS)

Wildemeersch, Jasmien; Timmerman, Emma; Garba, Maman; Mazijn, Bernard; Sabiou, Mahamane; Ibro, Germaine; Cornelis, Wim

2013-04-01

Nigerien subsistence farmers increasingly rely on marginal degraded lands for food production as a result of ongoing soil degradation, limited fertile land availability and growing population pressure. These degraded lands, however, generally provide poor yields which are largely assigned to an increased vulnerability to drought as a major part of the rainfall is lost through inefficient rain water partitioning. More efficient use of rainwater can be achieved with the aid of water and soil conservation (WSC) techniques such as zaï (Z) and demi-lunes (DL) which positively alter the soil water-balance in favour of productive water and deliver a wide range of ecosystem services. The results of our in situ root-zone water balance experiment at Sadoré-village (2011-2012) confirm improved agronomical, hydrological and soil quality parameters under the Z and DL treatments. The highest grain yield is produced by the zaï, which is 3 times better than the grain yield of the demi-lunes. Zaï moreover reduce cumulative actual evaporation and both Z and DL increase soil water content in the catchment as measured by a neutron probe and biological soil quality indicated by an extended nematode population of free living species. The techniques therefore show promising potential to rehabilitate and to increase the agronomic efficiency of marginal land in Niger, but the adoption of the techniques has not been widespread and the dissemination generally encounters difficulties. To identify and quantify the importance and presence of several adoption obstacles in the Tillabéri region, we conducted 100 households surveys exploring farmers' erosion perception, WSC technique knowledge and resource availability. Although the important adoption triggers such as food insecurity and limited fertile land availability are present, the regions' adoption rate is low due to a general lack of manure availability and a profound knowledge of erosion and the techniques themselves, which indicates the need for an efficient and specialised policy focusing on more than yield alone. Just like every other agricultural undertaking in the Sahel, adoption with economic profit as sole goal contains a significant investment risk for an independent subsistence farmer due to the risk of drought and dry spells, which results even under WSC in low yields. Most farmers have little awareness of erosion causes and effects and therefore do not relate WSC techniques to the indirect benefits for their livelihoods besides higher yield such as re-greening and the prevention of flooding, which are to be taken into account to secure sustainable solutions to drought and food insecurity.

4R Water Quality Impacts: An Assessment and Synthesis of Forty Years of Drainage Nitrogen Losses.

PubMed

Christianson, L E; Harmel, R D

2015-11-01

The intersection of agricultural drainage and nutrient mobility in the environment has led to multiscale water quality concerns. This work reviewed and quantitatively analyzed nearly 1,000 site-years of subsurface tile drainage nitrogen (N) load data to develop a more comprehensive understanding of the impacts of 4R practices (application of the right source of nutrients, at the right rate and time, and in the right place) within drained landscapes across North America. Using drainage data newly compiled in the "Measured Annual Nutrient loads from AGricultural Environments" (MANAGE) database, relationships were developed across N application rates for nitrate N drainage loads and corn ( L.) yields. The lack of significant differences between N application timing or application method was inconsistent with the current emphasis placed on application timing, in particular, as a water quality improvement strategy ( = 0.934 and 0.916, respectively). Broad-scale analyses such as this can help identify major trends for water quality, but accurate implementation of the 4R approach will require site-specific knowledge to balance agronomic and environmental goals. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Dynamic Modeling of Silicon Bioavailability, Uptake, Transport, and Accumulation: Applicability in Improving the Nutritional Quality of Tomato

PubMed Central

López-Pérez, Mari C.; Pérez-Labrada, Fabián; Ramírez-Pérez, Lino J.; Juárez-Maldonado, Antonio; Morales-Díaz, América B.; González-Morales, Susana; García-Dávila, Luis R.; García-Mata, Jesús; Benavides-Mendoza, Adalberto

2018-01-01

Silicon is an essential nutrient for humans, additionally is beneficial for terrestrial plants. In plants Si enhances tolerance to different types of stress; in humans, it improves the metabolism and increases the strength of skeletal and connective tissues as well as of the immune system. Most of the Si intake of humans come from edible plants creating a double benefit: first, because the absorption of Si increases the antioxidants and other phytochemicals in plants, thereby increasing its functional value, and second because the higher concentration of Si in plants increases intake in human consumers. Therefore, it is desirable to raise the availability of Si in the human diet through the agronomic management of Si accumulator species, such as corn, wheat, rice, soybeans, and beans. But also in such species as tomatoes, carrots, and other vegetables, whose per capita consumption has increased. However, there are few systematized recommendations for the application and management of Si fertilizers based on the physicochemical factors that determine their availability, absorption, transport, and deposition in cells and tissues. This study presents updated information about edaphic and plant factors, which determine the absorption, transport, and deposition rates in edible organs. The information was integrated into an estimated dynamic model that approximates the processes previously mentioned in a model that represents a tomato crop in soil and soilless conditions. In the model, on the other hand, was integrated the available information about key environmental factors related to Si absorption and mobilization, such as the temperature, pH, and soil organic matter. The output data of the model were compared against information collected in the literature, finding an adequate adjustment. The use of the model for educational or technical purposes, including the possibility of extending it to other horticultural crops, can increase the understanding of the agronomic management of Si in plants. PMID:29868098

Modelling the structural response of cotton plants to mepiquat chloride and population density

PubMed Central

Gu, Shenghao; Evers, Jochem B.; Zhang, Lizhen; Mao, Lili; Zhang, Siping; Zhao, Xinhua; Liu, Shaodong; van der Werf, Wopke; Li, Zhaohu

2014-01-01

Background and Aims Cotton (Gossypium hirsutum) has indeterminate growth. The growth regulator mepiquat chloride (MC) is used worldwide to restrict vegetative growth and promote boll formation and yield. The effects of MC are modulated by complex interactions with growing conditions (nutrients, weather) and plant population density, and as a result the effects on plant form are not fully understood and are difficult to predict. The use of MC is thus hard to optimize. Methods To explore crop responses to plant density and MC, a functional–structural plant model (FSPM) for cotton (named CottonXL) was designed. The model was calibrated using 1 year's field data, and validated by using two additional years of detailed experimental data on the effects of MC and plant density in stands of pure cotton and in intercrops of cotton with wheat. CottonXL simulates development of leaf and fruits (square, flower and boll), plant height and branching. Crop development is driven by thermal time, population density, MC application, and topping of the main stem and branches. Key Results Validation of the model showed good correspondence between simulated and observed values for leaf area index with an overall root-mean-square error of 0·50 m2 m−2, and with an overall prediction error of less than 10 % for number of bolls, plant height, number of fruit branches and number of phytomers. Canopy structure became more compact with the decrease of leaf area index and internode length due to the application of MC. Moreover, MC did not have a substantial effect on boll density but increased lint yield at higher densities. Conclusions The model satisfactorily represents the effects of agronomic measures on cotton plant structure. It can be used to identify optimal agronomic management of cotton to achieve optimal plant structure for maximum yield under varying environmental conditions. PMID:24489020

Dynamic Modeling of Silicon Bioavailability, Uptake, Transport, and Accumulation: Applicability in Improving the Nutritional Quality of Tomato.

PubMed

López-Pérez, Mari C; Pérez-Labrada, Fabián; Ramírez-Pérez, Lino J; Juárez-Maldonado, Antonio; Morales-Díaz, América B; González-Morales, Susana; García-Dávila, Luis R; García-Mata, Jesús; Benavides-Mendoza, Adalberto

2018-01-01

Silicon is an essential nutrient for humans, additionally is beneficial for terrestrial plants. In plants Si enhances tolerance to different types of stress; in humans, it improves the metabolism and increases the strength of skeletal and connective tissues as well as of the immune system. Most of the Si intake of humans come from edible plants creating a double benefit: first, because the absorption of Si increases the antioxidants and other phytochemicals in plants, thereby increasing its functional value, and second because the higher concentration of Si in plants increases intake in human consumers. Therefore, it is desirable to raise the availability of Si in the human diet through the agronomic management of Si accumulator species, such as corn, wheat, rice, soybeans, and beans. But also in such species as tomatoes, carrots, and other vegetables, whose per capita consumption has increased. However, there are few systematized recommendations for the application and management of Si fertilizers based on the physicochemical factors that determine their availability, absorption, transport, and deposition in cells and tissues. This study presents updated information about edaphic and plant factors, which determine the absorption, transport, and deposition rates in edible organs. The information was integrated into an estimated dynamic model that approximates the processes previously mentioned in a model that represents a tomato crop in soil and soilless conditions. In the model, on the other hand, was integrated the available information about key environmental factors related to Si absorption and mobilization, such as the temperature, pH, and soil organic matter. The output data of the model were compared against information collected in the literature, finding an adequate adjustment. The use of the model for educational or technical purposes, including the possibility of extending it to other horticultural crops, can increase the understanding of the agronomic management of Si in plants.

GERIHCO "Gestion des Risques et Histoire des Coulées Boueuses" - Risk Management and History of Muddy Floods / An interdisciplinary approach to understand the muddy floods risk (Alsace - France)

NASA Astrophysics Data System (ADS)

Heitz, C.; Rozan, A.; Auzet, A.; Koller, R.; Wintz, M.

2012-12-01

The interdisciplinary research program GERIHCO started in 2005 with a pool of a dozen researchers from disciplines as different as economy, sociology, geography, agronomy, … interested in the study of the risk of muddy floods in the Alsatian region. The main issues studied are related to: (1) The study of the physical processes of muddy floods and the agronomic measures that can decrease the hazard show that the cultural practices without ploughing have positive effects on runoff and erosion. But there are some known consequences of these practices on agronomic issues such as: biological activity in the soil and sanitary situation in the fields (weeds and parasites, for instance). We assess the level of pesticides employment under such cultural practices. Is it more/less important and does it impact the environment more than in conventional systems? Two indicators are used: I-PHY (INDIGO software®) and TFI, Treatment Frequency Index. (2) The economic analyses of the adoption of reduced tillage aims to carry out an economic analysis of the reduced tillage implementation for Alsatian crops farms, by using technical and economic indicators derived from SYSTERRE®. The main results show that reduced tillage - maintains yield levels, reduces working time and gasoil consumptions, maintains a direct margin compared to ploughing system. (3) The sociological analysis of the farmers' behaviors deals with the understanding of their behaviors face to soil erosion and environmental issues. The sociological study focuses on the farmers points of view, which are the very last stakeholders in the risk management decision system. Surveys and individual interviews have been conducted in 3 villages, frequently concerned by muddy floods. (4) The study of the perception of protective measures and the modelling their efficiency highlight that several measures can be taken to decrease the risk: agronomic measures, policy measures, economic measures,...A dialogue between all stakeholders has to be initiate to define the best practices and the best way to manage muddy floods and their damages. The psychosocial analyse (based on questionnaires) allows us to understand the agents' behaviors and then to identify the potential protective measures they should adopt. Surveys among farmers highlight their willingness to set up fascines in their fields. The results show that: they perceive fascines as a "solution of emergency", negative aspects mainly concern the cost, the integration in the landscape and the care and maintenance of the fascines, there is a lack of information dealing with the protective measures and their efficiency. All the results show that the management of a natural disaster occurring every year in some cases and damaging inhabitants as well as farmers has to be managed with a collaborative approach: all actors have to be involved in the settlement of mitigation measures. The financial support of the local Water Agency allows us to implement the different studies and then to communicate largely the results of the program. This investment also shows the interest of such an approach in risk studies.

Rice epigenomics and epigenetics: challenges and opportunities.

PubMed

Chen, Xiangsong; Zhou, Dao-Xiu

2013-05-01

During recent years rice genome-wide epigenomic information such as DNA methylation and histone modifications, which are important for genome activity has been accumulated. The function of a number of rice epigenetic regulators has been studied, many of which are found to be involved in a diverse range of developmental and stress-responsive pathways. Analysis of epigenetic variations among different rice varieties indicates that epigenetic modification may lead to inheritable phenotypic variation. Characterizing phenotypic consequences of rice epigenomic variations and the underlining chromatin mechanism and identifying epialleles related to important agronomic traits may provide novel strategies to enhance agronomically favorable traits and grain productivity in rice. Copyright © 2013 Elsevier Ltd. All rights reserved.

Spectral-agronomic relationships of corn, soybean and wheat canopies

NASA Technical Reports Server (NTRS)

Bauer, M. E. (Principal Investigator); Daughtry, C. S. T.; Vanderbilt, V. C.

1981-01-01

During the past six years several thousand reflectance spectra of corn, soybean, and wheat canopies were acquired and analyzed. The relationships of biophysical variables, including leaf area index, percent soil cover, chlorophyll and water content, to the visible and infrared reflectance of canopies are described. The effects on reflectance of cultural, environmental, and stress factors such as planting data, seeding rate, row spacing, cultivar, soil type and nitrogen fertilization are also examined. The conclusions are that several key agronomic variables including leaf area index, development stage and degree of stress are strongly related to spectral reflectance and that it should be possible to estimate these descriptions of crop condition from satellite acquired multispectral data.

Nitrogen use efficiency in grain production and the estimated nitrogen input/output balance in China agriculture.

PubMed

Li, Shutian; He, Ping; Jin, Jiyun

2013-03-30

Understanding the nitrogen (N) use efficiency and N input/output balance in the agricultural system is crucial for best management of N fertilisers in China. In the last 60 years, N fertiliser consumption correlated positively with grain production. During that period the partial factor productivity of N (PFPN ) declined greatly from more than 1000 kg grain kg⁻¹ N in the 1950s to nearly 30 kg grain kg⁻¹ N in 2008. This change in PFPN could be largely explained by the increase in N rate. The average agronomic efficiency of fertiliser N (AEN ) for rice, wheat and maize during 2000-2010 was 12.6, 8.3 and 11.5 kg kg⁻¹ respectively, which was similar to that in the early 1980s but lower than that in the early 1960s. Estimation based on statistical data showed that a total of 49.16 × 10⁶ t of N was input into Chinese agriculture, of which chemical N, organic fertiliser N, biological fixed N and other sources accounted for 58.2, 24.3, 10.5 and 7.0% respectively. Nitrogen was surplus in all regions, the total N surplus being 10.6 × 10⁶ t (60.6 kg ha⁻¹). The great challenge is to balance the use of current N fertilisers between regions and crops to improve N use efficiency while maintaining or increasing crop production under the high-intensity agricultural system of China. © 2012 Society of Chemical Industry.

Use of ex vitro composite plants to study the interaction of cowpea (Vigna unguiculata L.) with the root parasitic angiosperm Striga gesnerioides

PubMed Central

2012-01-01

Background Cowpea (Vigna unguiculata L.) is an important grain and forage legume grown throughout sub-Saharan Africa primarily by subsistence farmers on poor, drought prone soils. Genetic improvement of the crop is being actively pursued and numerous functional genomics studies are underway aimed at characterizing gene controlling key agronomic characteristics for disease and pest resistances. Unfortunately, similar to other legumes, efficient plant transformation technology is a rate-limiting step in analysis of gene function in cowpea. Results Here we describe an optimized protocol for the rapid generation of transformed hairy roots on ex vitro composite plants of cowpea using Agrobacterium rhizogenes. We further demonstrate the applicability of cowpea composite plants to study gene expression involved in the resistance response of the plant roots to attack by the root parasitic weed, Striga gesnerioides. The utility of the new system and critical parameters of the method are described and discussed herein. Conclusions Cowpea composite plants offer a rapid alternative to methods requiring stable transformation and whole plant regeneration for studying gene expression in resistance or susceptibility responses to parasitic weeds. Their use can likely be readily adapted to look at the effects of both ectopic gene overexpression as well as gene knockdown of root associated defense responses and to the study of a broader range of root associated physiological and aphysiological processes including root growth and differentiation as well as interactions with other root pests, parasites, and symbionts. PMID:22741546

Bioremediation of cadmium- and zinc-contaminated soil using Rhodobacter sphaeroides.

PubMed

Peng, Weihua; Li, Xiaomin; Song, Jingxiang; Jiang, Wei; Liu, Yingying; Fan, Wenhong

2018-04-01

Bioremediation using microorganisms is a promising technique to remediate soil contaminated with heavy metals. In this study, Rhodobacter sphaeroides was used to bioremediate soils contaminated with cadmium (Cd) and zinc (Zn). The study found that the treatment reduced the overall bioavailable fractions (e.g., exchangeable and carbonate bound phases) of Cd and Zn. More stable fractions (e.g., Fe-Mn oxide, organic bound, and residual phases (only for Zn)) increased after bioremediation. A wheat seedling experiment revealed that the phytoavailability of Cd was reduced after bioremediation using R. sphaeroides. After bioremediation, the exchangeable phases of Cd and Zn in soil were reduced by as much as 30.7% and 100.0%, respectively; the Cd levels in wheat leaf and root were reduced by as much as 62.3% and 47.2%, respectively. However, when the soils were contaminated with very high levels of Cd and Zn (Cd 54.97-65.33 mg kg -1 ; Zn 813.4-964.8 mg kg -1 ), bioremediation effects were not clear. The study also found that R. sphaeroides bioremediation in soil can enhance the Zn/Cd ratio in the harvested wheat leaf and root overall. This indicates potentially favorable application in agronomic practice and biofortification. Although remediation efficiency in highly contaminated soil was not significant, R. sphaeroides may be potentially and practically applied to the bioremediation of soils co-contaminated by Cd and Zn. Copyright © 2018 Elsevier Ltd. All rights reserved.

Molecular mapping of QTLs for plant type and earliness traits in pigeonpea (Cajanus cajan L. Millsp.)

PubMed Central

2012-01-01

Background Pigeonpea is an important grain legume of the semi-arid tropics and sub-tropical regions where it plays a crucial role in the food and nutritional security of the people. The average productivity of pigeonpea has remained very low and stagnant for over five decades due to lack of genomic information and intensive breeding efforts. Previous SSR-based linkage maps of pigeonpea used inter-specific crosses due to low inter-varietal polymorphism. Here our aim was to construct a high density intra-specific linkage map using genic-SNP markers for mapping of major quantitative trait loci (QTLs) for key agronomic traits, including plant height, number of primary and secondary branches, number of pods, days to flowering and days to maturity in pigeonpea. Results A population of 186 F2:3 lines derived from an intra-specific cross between inbred lines ‘Pusa Dwarf’ and ‘HDM04-1’ was used to construct a dense molecular linkage map of 296 genic SNP and SSR markers covering a total adjusted map length of 1520.22 cM for the 11 chromosomes of the pigeonpea genome. This is the first dense intra-specific linkage map of pigeonpea with the highest genome length coverage. Phenotypic data from the F2:3 families were used to identify thirteen QTLs for the six agronomic traits. The proportion of phenotypic variance explained by the individual QTLs ranged from 3.18% to 51.4%. Ten of these QTLs were clustered in just two genomic regions, indicating pleiotropic effects or close genetic linkage. In addition to the main effects, significant epistatic interaction effects were detected between the QTLs for number of pods per plant. Conclusions A large amount of information on transcript sequences, SSR markers and draft genome sequence is now available for pigeonpea. However, there is need to develop high density linkage maps and identify genes/QTLs for important agronomic traits for practical breeding applications. This is the first report on identification of QTLs for plant type and maturity traits in pigeonpea. The QTLs identified in this study provide a strong foundation for further validation and fine mapping for utilization in the pigeonpea improvement. PMID:23043321

Productive potential of cassava plants (Manihot esculenta Crantz) propagated by leaf buds.

PubMed

Neves, Reizaluamar J; Diniz, Rafael P; Oliveira, Eder J DE

2018-04-23

New techniques of rapid multiplication of cassava (Manihot esculenta Crantz) have been developed, requiring technical support for large-scale use. This work main to evaluate the agronomic performance of plantlets obtained by leaf buds technique against stem cuttings in the field conditions. The work was conducted using the randomized block design in a factorial scheme with 3 varieties (BRS Kiriris, 98150-06, 9624-09) × 4 origins of the plantlets (conventional - stem cuttings of 20 cm length, leaf buds of the upper, middle and inferior stem part) × 2 agrochemicals (control and treated). There was a remarkable decrease in some agronomic traits that ranged from 23% (number of branches) to 62% (shoot weight) when using leaf buds plantlets. The treatment of plantlets with agrochemicals promoted significant increases in all traits, ranging from 26% (number of roots per plant) to 46% (shoot weight). The plantlets originating from leaf buds of the upper and middle parts were able to generate stem-like plants similar to stem-derived ones. Despite its lower agronomic performance under field conditions, multiplication by leaf buds may generate five times the number of propagules in comparison with the conventional multiplication, and therefore it could be a viable alternative for rapid cassava multiplication.

Global value of GM rice: a review of expected agronomic and consumer benefits.

PubMed

Demont, Matty; Stein, Alexander J

2013-06-25

Unlike the other major crops, no genetically modified (GM) varieties of rice have been commercialized at a large scale. Within the next 2-3 years new transgenic rice varieties could be ready for regulatory approval and subsequent commercialization, though. Given the importance of rice as staple crop for many of the world's poorest people, this will have implications for the alleviation of poverty, hunger and malnutrition. Thus, policy-makers need to be aware of the potential benefits of GM rice. We provide an overview of the literature and discuss the evidence on expected agronomic and consumer benefits of genetically engineered rice. We find that while GM rice with improved agronomic traits could deliver benefits similar to already commercialized biotechnology crops, expected benefits of consumer traits could be higher by an order of magnitude. By aggregating the expected annual benefits, we estimate the global value of GM rice to be US$64 billion per year. This is only an indicative value, as more GM varieties will become available in future. Nevertheless, such a figure can help guide policy-makers when deciding on the approval or funding of biotechnology crops and it may also raise awareness among consumers about what is at stake for their societies. Copyright © 2013 Elsevier B.V. All rights reserved.

Investigation of the effect of genotype and agronomic conditions on metabolomic profiles of selected strawberry cultivars with different sensitivity to environmental stress.

PubMed

Akhatou, Ikram; González-Domínguez, Raúl; Fernández-Recamales, Ángeles

2016-04-01

Strawberry is one of the most economically important and widely cultivated fruit crops across the world, so that there is a growing need to develop new analytical methodologies for the authentication of variety and origin, as well as the assessment of agricultural and processing practices. In this work, an untargeted metabolomic strategy based on gas chromatography mass spectrometry (GC-MS) combined with multivariate statistical techniques was used for the first time to characterize the primary metabolome of different strawberry cultivars and to study metabolite alterations in response to multiple agronomic conditions. For this purpose, we investigated three varieties of strawberries with different sensitivity to environmental stress (Camarosa, Festival and Palomar), cultivated in soilless systems using various electrical conductivities, types of coverage and substrates. Metabolomic analysis revealed significant alterations in primary metabolites between the three strawberry cultivars grown under different crop conditions, including sugars (fructose, glucose), organic acids (malic acid, citric acid) and amino acids (alanine, threonine, aspartic acid), among others. Therefore, it could be concluded that GC-MS based metabolomics is a suitable tool to differentiate strawberry cultivars and characterize metabolomic changes associated with environmental and agronomic conditions. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Radiation and chemical mutagen induced somaclonal variations through in vitro organogenesis of cotton (Gossypium hirsutum L.).

PubMed

Muthusamy, Annamalai; Jayabalan, Narayanasamy

2014-12-01

The purpose of the investigation was to induce somaclonal variations by gamma rays (GR), ethylmethane sulphonate (EMS) and sodium azide (SA) during in vitro organogenesis of cotton. The shoot tip explants were irradiated with 5-50 Gray (Gy) GR (Cobalt 60), 0.5-5.0 mM EMS and SA separately, and inoculated on Murashige and Skoog (MS) medium fortified with plant growth regulator (PGR) for organogenesis. The plantlets with well-developed root systems were acclimatized and transferred into the experimental field to screen the somaclonal variations during growth and development. The number of somaclonal variations was observed in growth of irradiated/treated shoot tips, multiplication, plantlet regeneration and growth in vitro and ex vitro. The lower doses/concentrations of mutagenic treatments showed significant enhancement in selected agronomical characters and they showed decreased trends with increasing doses/concentrations of mutagenic agents. The results of the present study revealed the influence of lower doses/concentrations of mutagenic treatments on in vitro and ex vitro growth of cotton plantlets and their significant improvement in agronomical characters which needs further imperative stability analysis. The present observations showed the platform to use lower doses/concentrations of mutagenic agents to induce variability for enhanced agronomical characters, resistant and tolerant cotton varieties.

A high-density genetic map and QTL analysis of agronomic traits in foxtail millet [Setaria italica (L.) P. Beauv.] using RAD-seq.

PubMed

Wang, Jun; Wang, Zhilan; Du, Xiaofen; Yang, Huiqing; Han, Fang; Han, Yuanhuai; Yuan, Feng; Zhang, Linyi; Peng, Shuzhong; Guo, Erhu

2017-01-01

Foxtail millet (Setaria italica), a very important grain crop in China, has become a new model plant for cereal crops and biofuel grasses. Although its reference genome sequence was released recently, quantitative trait loci (QTLs) controlling complex agronomic traits remains limited. The development of massively parallel genotyping methods and next-generation sequencing technologies provides an excellent opportunity for developing single-nucleotide polymorphisms (SNPs) for linkage map construction and QTL analysis of complex quantitative traits. In this study, a high-throughput and cost-effective RAD-seq approach was employed to generate a high-density genetic map for foxtail millet. A total of 2,668,587 SNP loci were detected according to the reference genome sequence; meanwhile, 9,968 SNP markers were used to genotype 124 F2 progenies derived from the cross between Hongmiaozhangu and Changnong35; a high-density genetic map spanning 1648.8 cM, with an average distance of 0.17 cM between adjacent markers was constructed; 11 major QTLs for eight agronomic traits were identified; five co-dominant DNA markers were developed. These findings will be of value for the identification of candidate genes and marker-assisted selection in foxtail millet.

A high-density genetic map and QTL analysis of agronomic traits in foxtail millet [Setaria italica (L.) P. Beauv.] using RAD-seq

PubMed Central

Wang, Zhilan; Du, Xiaofen; Yang, Huiqing; Han, Fang; Han, Yuanhuai; Yuan, Feng; Zhang, Linyi; Peng, Shuzhong; Guo, Erhu

2017-01-01

Foxtail millet (Setaria italica), a very important grain crop in China, has become a new model plant for cereal crops and biofuel grasses. Although its reference genome sequence was released recently, quantitative trait loci (QTLs) controlling complex agronomic traits remains limited. The development of massively parallel genotyping methods and next-generation sequencing technologies provides an excellent opportunity for developing single-nucleotide polymorphisms (SNPs) for linkage map construction and QTL analysis of complex quantitative traits. In this study, a high-throughput and cost-effective RAD-seq approach was employed to generate a high-density genetic map for foxtail millet. A total of 2,668,587 SNP loci were detected according to the reference genome sequence; meanwhile, 9,968 SNP markers were used to genotype 124 F2 progenies derived from the cross between Hongmiaozhangu and Changnong35; a high-density genetic map spanning 1648.8 cM, with an average distance of 0.17 cM between adjacent markers was constructed; 11 major QTLs for eight agronomic traits were identified; five co-dominant DNA markers were developed. These findings will be of value for the identification of candidate genes and marker-assisted selection in foxtail millet. PMID:28644843

Fertilizer standards for controlling groundwater nitrate pollution from agriculture: El Salobral-Los Llanos case study, Spain

NASA Astrophysics Data System (ADS)

Peña-Haro, S.; Llopis-Albert, C.; Pulido-Velazquez, M.; Pulido-Velazquez, D.

2010-10-01

SummaryAlthough the legislation on groundwater quality targets pollutant concentration, the effects of measures on non-point source pollution control are often evaluated in terms of their emission reduction potential at the source, not on their capacity of reducing the pollutant concentration in groundwater. This paper applies a hydro-economic modelling framework to an aquifer, El Salobral-Los Llanos aquifer (Mancha Oriental, Spain), where nitrate concentrations higher than those allowed by the EU Water Framework Directive and Groundwater Directive are locally found due to the intense fertilizer use in irrigated crops. The approach allows defining the economically optimal allocation of spatially variable fertilizer standards in agricultural basins using a hydro-economic model that links the fertilizer application with groundwater nitrate concentration at different control sites while maximizing net economic benefits. The methodology incorporates results from agronomic simulations, groundwater flow and transport into a management framework that yields the fertilizer allocation that maximizes benefits in agriculture while meeting the environmental standards. The cost of applying fertilizer standards was estimated as the difference between the private net revenues from actual application and the scenarios generated considering the application of the standards. Furthermore, the cost of applying fertilizer standards was compared with the cost of taxing nitrogen fertilizers in order to reduce the fertilizer use to a level that the nitrate concentration in groundwater was below the limit. The results show the required reduction of fertilizer application in the different crop areas depending on its location with regards to the control sites, crop types and soil-plant conditions, groundwater flow and transport processes, time horizon for meeting the standards, and the cost of implementing such a policy (as forgone benefits). According to the results, a high fertilizer price would be required to reduce nitrate concentrations in groundwater below the standard of 50 mg/l. In this particular case, it is more cost-efficient to apply standards to fertilizer use than taxes, although the instrument of fertilizer standards is more difficult to implement and control.

Genetic control of inflorescence architecture during rice domestication

PubMed Central

Zhu, Zuofeng; Tan, Lubin; Fu, Yongcai; Liu, Fengxia; Cai, Hongwei; Xie, Daoxin; Wu, Feng; Wu, Jianzhong; Matsumoto, Takashi; Sun, Chuanqing

2013-01-01

Inflorescence architecture is a key agronomical factor determining grain yield, and thus has been a major target of cereal crop domestication. Transition from a spread panicle typical of ancestral wild rice (Oryza rufipogon Griff.) to the compact panicle of present cultivars (O. sativa L.) was a crucial event in rice domestication. Here we show that the spread panicle architecture of wild rice is controlled by a dominant gene, OsLG1, a previously reported SBP-domain transcription factor that controls rice ligule development. Association analysis indicates that a single-nucleotide polymorphism-6 in the OsLG1 regulatory region led to a compact panicle architecture in cultivars during rice domestication. We speculate that the cis-regulatory mutation can fine-tune the spatial expression of the target gene, and that selection of cis-regulatory mutations might be an efficient strategy for crop domestication. PMID:23884108

Jatropha (Jatropha curcas L.).

PubMed

Maravi, Devendra Kumar; Mazumdar, Purabi; Alam, Shamsher; Goud, Vaibhav V; Sahoo, Lingaraj

2015-01-01

The seed oil of Jatropha (Jatropha curcas L.) as a source of biodiesel fuel is gaining worldwide importance. Commercial-scale exploration of Jatropha has not succeeded due to low and unstable seed yield in semiarid lands unsuitable for the food production and infestation to diseases. Genetic engineering is promising to improve various agronomic traits in Jatropha and to understand the molecular functions of key Jatropha genes for molecular breeding. We describe a protocol routinely followed in our laboratory for stable and efficient Agrobacterium tumefaciens-mediated transformation of Jatropha using cotyledonary leaf as explants. The 4-day-old explants are infected with Agrobacterium tumefaciens strain EHA105 harboring pBI121 plant binary vector, which contains nptII as plant selectable marker and gus as reporter. The putative transformed plants are selected on kanamycin, and stable integration of transgene(s) is confirmed by histochemical GUS assay, polymerase chain reaction, and Southern hybridization.

Can functional hologenomics aid tackling current challenges in plant breeding?

PubMed

Nogales, Amaia; Nobre, Tânia; Valadas, Vera; Ragonezi, Carla; Döring, Matthias; Polidoros, Alexios; Arnholdt-Schmitt, Birgit

2016-07-01

Molecular plant breeding usually overlooks the genetic variability that arises from the association of plants with endophytic microorganisms, when looking at agronomic interesting target traits. This source of variability can have crucial effects on the functionality of the organism considered as a whole (the holobiont), and therefore can be selectable in breeding programs. However, seeing the holobiont as a unit for selection and improvement in breeding programs requires novel approaches for genotyping and phenotyping. These should not focus just at the plant level, but also include the associated endophytes and their functional effects on the plant, to make effective desirable trait screenings. The present review intends to draw attention to a new research field on functional hologenomics that if associated with adequate phenotyping tools could greatly increase the efficiency of breeding programs. © The Author 2015. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Synthetic Botany.

PubMed

Boehm, Christian R; Pollak, Bernardo; Purswani, Nuri; Patron, Nicola; Haseloff, Jim

2017-07-05

Plants are attractive platforms for synthetic biology and metabolic engineering. Plants' modular and plastic body plans, capacity for photosynthesis, extensive secondary metabolism, and agronomic systems for large-scale production make them ideal targets for genetic reprogramming. However, efforts in this area have been constrained by slow growth, long life cycles, the requirement for specialized facilities, a paucity of efficient tools for genetic manipulation, and the complexity of multicellularity. There is a need for better experimental and theoretical frameworks to understand the way genetic networks, cellular populations, and tissue-wide physical processes interact at different scales. We highlight new approaches to the DNA-based manipulation of plants and the use of advanced quantitative imaging techniques in simple plant models such as Marchantia polymorpha. These offer the prospects of improved understanding of plant dynamics and new approaches to rational engineering of plant traits. Copyright © 2017 Cold Spring Harbor Laboratory Press; all rights reserved.

Plant Volatile Genomics: Recent Developments and Putative Applications in Agriculture.

PubMed

Paul, Ishita; Bhadoria, Pratapbhanu Singh; Mitra, Adinpunya

2016-01-01

The review of patents reveals that investigation of plant volatiles and their biosynthetic pathways is a relatively new field in plant biochemistry. The diversity of structure and function of these volatiles is gradually being understood. However, the great diversity of volatile biochemicals plants emit through different parts plays numerous roles in stress resistance and other ecological interactions. From an agronomic point of view, regulation volatile production in crop plants may lead to desirable changes in plant defence, pollinator attraction and post-harvest qualities. In several crop species, genetic manipulation or metabolic channelling have led to altered emission I aroma profiles. This short review summarizes some recent cases of artificial manipulation of volatile profile in planta or in transformed microbial systems.

The application of genomics and bioinformatics to accelerate crop improvement in a changing climate.

PubMed

Batley, Jacqueline; Edwards, David

2016-04-01

The changing climate and growing global population will increase pressure on our ability to produce sufficient food. The breeding of novel crops and the adaptation of current crops to the new environment are required to ensure continued food production. Advances in genomics offer the potential to accelerate the genomics based breeding of crop plants. However, relating genomic data to climate related agronomic traits for use in breeding remains a huge challenge, and one which will require coordination of diverse skills and expertise. Bioinformatics, when combined with genomics has the potential to help maintain food security in the face of climate change through the accelerated production of climate ready crops. Copyright © 2016 Elsevier Ltd. All rights reserved.

Development and application of transgenic technologies in cassava.

PubMed

Taylor, Nigel; Chavarriaga, Paul; Raemakers, Krit; Siritunga, Dimuth; Zhang, Peng

2004-11-01

The capacity to integrate transgenes into the tropical root crop cassava (Manihot esculenta Crantz) is now established and being utilized to generate plants expressing traits of agronomic interest. The tissue culture and gene transfer systems currently employed to produce these transgenic cassava have improved significantly over the past 5 years and are assessed and compared in this review. Programs are underway to develop cassava with enhanced resistance to viral diseases and insects pests, improved nutritional content, modified and increased starch metabolism and reduced cyanogenic content of processed roots. Each of these is described individually for the underlying biology the molecular strategies being employed and progress achieved towards the desired product. Important advances have occurred, with transgenic plants from several laboratories being prepared for field trails.

Advances in cereal genomics and applications in crop breeding.

PubMed

Varshney, Rajeev K; Hoisington, David A; Tyagi, Akhilesh K

2006-11-01

Recent advances in cereal genomics have made it possible to analyse the architecture of cereal genomes and their expressed components, leading to an increase in our knowledge of the genes that are linked to key agronomically important traits. These studies have used molecular genetic mapping of quantitative trait loci (QTL) of several complex traits that are important in breeding. The identification and molecular cloning of genes underlying QTLs offers the possibility to examine the naturally occurring allelic variation for respective complex traits. Novel alleles, identified by functional genomics or haplotype analysis, can enrich the genetic basis of cultivated crops to improve productivity. Advances made in cereal genomics research in recent years thus offer the opportunities to enhance the prediction of phenotypes from genotypes for cereal breeding.

Magnitude differences in agronomic, chemical, nutritional, and structural features among different varieties of forage corn grown on dry land and irrigated land.

PubMed

Xin, Hangshu; Abeysekara, Samen; Zhang, Xuewei; Yu, Peiqiang

2015-03-11

In this study, eight varieties of corn forage grown in semiarid western Canada (including Pioneer P2501, Pioneer P39m26, Pioneer P7443, Hyland HL3085, Hyland HLBaxxos, Hyland HLR219, Hyland HLSR22, and Pickseed Silex BT) were selected to explore the effect of irrigation implementation in comparison with nonirrigation on (1) agronomic characteristics, (2) basic chemical profiles explored by using a near-infrared reflectance (NIR) system, and (3) protein and carbohydrate internal structural parameters revealed by using an attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR) system. Also, principal component analysis (PCA) was performed on spectroscopic data for clarification of differences in molecular structural makeup among the varieties. The results showed that irrigation treatment significantly increased (P < 0.05) contents of dry matter (DM) and organic matter (OM) but decreased crude protein (CP) of corn forages. Significant interactions of irrigation treatment and corn variety were observed on most agronomic characteristics (DM yield, T/ha, days to tasseling, days to silking) and crude fiber (CF) and ether extract (EE) contents as well as some spectral data such as cellulosic compounds (CELC) peak intensity, peak ratios of CHO third peak to CELC, α-helix to β-sheet, and CHO third peak to amide I. Additionally, the spectral ratios of chemical functional groups that related to structural and nonstructural carbohydrates and protein polymers in forages did not remain constant over corn varieties cultivated with and without water treatment. Moreover, different cultivars had different growth, structure, and nutrition performances in this study. Although significant differences could be found in peak intensities, PCA results indicated some structural similarities existed between two treated corn forages with the exception of HL3085 and HLBaxxos. In conclusion, irrigation and corn variety had interaction effects on agronomic, chemical, nutritional, and structural features. Further study on the optimum level of irrigation for corn forage cultivation might be helpful in semiarid regions such as western Canada.

Agronomic performance of new open pollinated experimental lines of broccoli (Brassica oleracea L. var. italica) evaluated under organic farming.

PubMed

Sahamishirazi, Samira; Moehring, Jens; Zikeli, Sabine; Fleck, Michael; Claupein, Wilhelm; Graeff-Hoenninger, Simone

2018-01-01

In order to develop new open pollinating cultivars of broccoli for organic farming, two experiments were conducted during fall 2015 and spring 2016. This study was aimed at comparing the agronomic performance of eleven new open pollinating breeding lines of broccoli to introduce new lines and to test their seasonal suitability for organic farming. Field experiments were carried out at the organic research station Kleinhohenheim of the University of Hohenheim (Stuttgart-Germany). Different agronomic traits total biomass fresh weight, head fresh weight, head diameter, hollow-stem, fresh weight harvest index and marketable yield were assessed together with commercial control cultivars. The data from both experiments were analyzed using a two-stage mixed model approach. In our study, genotype, growing season and their interaction had significant effects on most traits. Plants belonging to the fall growing season had bigger sizes in comparison to spring with significantly (p< 0.0001) higher biomass fresh weight. Some experimental lines had significant lower head fresh weight in spring in comparison to the fall season. The high temperature during the harvest period for the spring season affected the yield negatively through decreasing the firmness of broccoli heads. The low average minimum temperatures during the spring growing season lead to low biomass fresh weight but high fresh weight harvest index. Testing the seasonal suitability of all open pollinating lines showed that the considered fall season was better for broccoli production. However, the change in yield between the fall and the spring growing season was not significant for "Line 701" and "CHE-MIC". Considering the expression of different agronomic traits, "CHE-GRE-G", "Calinaro" and "CAN-SPB" performed the best in the fall growing season, and "CHE-GRE-G", "CHE-GRE-A", "CHE-BAL-A" and "CHE-MIC" and "Line 701" were best in the spring growing season, specifically due to the highest marketable yield and proportion of marketable heads.

Agronomic Challenges and Opportunities for Smallholder Terrace Agriculture in Developing Countries

PubMed Central

Chapagain, Tejendra; Raizada, Manish N.

2017-01-01

Improving land productivity is essential to meet increasing food and forage demands in hillside and mountain communities. Tens of millions of smallholder terrace farmers in Asia, Africa, and Latin America who earn $1–2 per day do not have access to peer-reviewed knowledge of best agronomic practices, though they have considerable traditional ecological knowledge. Terrace farmers also lack access to affordable farm tools and inputs required to increase crop yields. The objectives of this review are to highlight the agronomic challenges of terrace farming, and offer innovative, low-cost solutions to intensify terrace agriculture while improving local livelihoods. The article focuses on smallholder farmers in developing nations, with particular reference to Nepal. The challenges of terrace agriculture in these regions include lack of quality land area for agriculture, erosion and loss of soil fertility, low yield, poor access to agricultural inputs and services, lack of mechanization, labor shortages, poverty, and illiteracy. Agronomic strategies that could help address these concerns include intensification of terraces using agro-ecological approaches along with introduction of light-weight, low-cost, and purchasable tools and affordable inputs that enhance productivity and reduce female drudgery. To package, deliver, and share these technologies with remote hillside communities, effective scaling up models are required. One opportunity to enable distribution of these products could be to “piggy-back” onto pre-existing snackfood/cigarette/alcohol distribution networks that are prevalent even in the most remote mountainous regions of the world. Such strategies, practices, and tools could be supported by formalized government policies dedicated to the well-being of terrace farmers and ecosystems, to maintain resiliency at a time of alarming climate change. We hope this review will inform governments, non-governmental organizations, and the private sector to draw attention to this neglected and vulnerable agro-ecosystem in developing countries. PMID:28367150

Efficient CRISPR/Cas9-based gene knockout in watermelon.

PubMed

Tian, Shouwei; Jiang, Linjian; Gao, Qiang; Zhang, Jie; Zong, Mei; Zhang, Haiying; Ren, Yi; Guo, Shaogui; Gong, Guoyi; Liu, Fan; Xu, Yong

2017-03-01

CRISPR/Cas9 system can precisely edit genomic sequence and effectively create knockout mutations in T0 generation watermelon plants. Genome editing offers great advantage to reveal gene function and generate agronomically important mutations to crops. Recently, RNA-guided genome editing system using the type II clustered regularly interspaced short palindromic repeats (CRISPR)-associated protein 9 (Cas9) has been applied to several plant species, achieving successful targeted mutagenesis. Here, we report the genome of watermelon, an important fruit crop, can also be precisely edited by CRISPR/Cas9 system. ClPDS, phytoene desaturase in watermelon, was selected as the target gene because its mutant bears evident albino phenotype. CRISPR/Cas9 system performed genome editing, such as insertions or deletions at the expected position, in transfected watermelon protoplast cells. More importantly, all transgenic watermelon plants harbored ClPDS mutations and showed clear or mosaic albino phenotype, indicating that CRISPR/Cas9 system has technically 100% of genome editing efficiency in transgenic watermelon lines. Furthermore, there were very likely no off-target mutations, indicated by examining regions that were highly homologous to sgRNA sequences. Our results show that CRISPR/Cas9 system is a powerful tool to effectively create knockout mutations in watermelon.

Phosphorus balance and use efficiency on 21 intensive grass-based dairy farms in the South of Ireland.

PubMed

Mihailescu, E; Murphy, P N C; Ryan, W; Casey, I A; Humphreys, J

2015-04-01

Given the finite nature of global phosphorus (P) resources, there is an increasing concern about balancing agronomic and environmental impacts from P usage on dairy farms. Data from a 3-year (2009-2011) survey were used to assess farm-gate P balances and P use efficiency (PUE) on 21 intensive grass-based dairy farms operating under the good agricultural practice (GAP) regulations in Ireland. Mean stocking rate (SR) was 2·06 livestock units (LU)/ha, mean P surplus was 5·09 kg/ha, or 0·004 kg P/kg milk solids (MS), and mean PUE was 0·70. Phosphorus imports were dominated by inorganic fertilizer (7·61 kg P/ha) and feeds (7·62 kg P/ha), while exports were dominated by milk (6·66 kg P/ha) and livestock (5·10 kg P/ha). Comparison to similar studies carried out before the introduction of the GAP regulations in 2006 indicated that P surplus, both per ha and per kg MS, has significantly decreased (by 74 and 81%, respectively) and PUE increased (by 48%), mostly due to decreased inorganic fertilizer P import and improvements in P management. There has been a notable shift towards spring application of organic manures, indicating improved awareness of the fertilizer value of organic manures and good compliance with the GAP regulations regarding fertilizer application timing. These results suggested a positive impact of the GAP regulations on dairy farm P surplus and PUE, indicating an improvement in both environmental and economic sustainability of dairy production through improved resource use efficiencies. Such improvements will be necessary to achieve national targets of improved water quality and increased dairy production. Results suggest that optimizing fertilizer and feed P imports combined with improved on-farm P recycling are the most effective way to increase PUE. Equally, continued monitoring of soil test P (STP) and P management will be necessary to ensure that adequate soil P fertility is maintained. Mean P surplus was lower and PUE was much higher than the overall mean surplus (15·92 kg P/ha) and PUE (0·47) from three studies of continental and English dairy farms, largely due to the low import system that is more typical in Ireland, with seasonal milk production (compact spring calving), low use of imported feeds and high use of grazed grass.

Development of a Worldwide Consortium on Evolutionary Participatory Breeding in Quinoa

PubMed Central

Murphy, Kevin M.; Bazile, Didier; Kellogg, Julianne; Rahmanian, Maryam

2016-01-01

Chenopodium quinoa is gaining global importance due to its excellent protein quality and tolerance of abiotic stresses. The last 60 years have seen major strides in the expansion of quinoa crop production and experimentation. Quinoa’s wide genetic diversity has led to its agronomic versatility and adaptation to different soil types, particularly saline soils, and environments with extremely variable conditions in terms of humidity, altitude, and temperature. The potential of quinoa to contribute to global food security was recognized in 2013 in the declaration of the International Year of Quinoa (IYQ). Promoting the use of improved homogeneous quinoa varieties standardized to comply with applicable norms on seeds or suited to intensified conventional agriculture farming systems may not generate the necessary resilience needed to respond to current and future global challenges. Maintaining and increasing quinoa biodiversity is imperative, as the dynamics of the global expansion of quinoa may constitute a threat to farmers if the spread is generated with a narrow genetic base. In this article, we propose that the method of evolutionary participatory breeding could be a useful tool to develop new quinoa genetic material in cooperation with farmers. We introduce preliminary results on quinoa population development with farmers in the Pacific Northwest region of the USA. We conclude that a global collaborative network on quinoa (GCN-Quinoa) could be the baseline for participatory plant breeding programs originating in developing or developed countries to meet the needs of farmers across a diversity of agronomic systems and a wide range of physical environments. PMID:27242815

DHPLC technology for high-throughput detection of mutations in a durum wheat TILLING population.

PubMed

Colasuonno, Pasqualina; Incerti, Ornella; Lozito, Maria Luisa; Simeone, Rosanna; Gadaleta, Agata; Blanco, Antonio

2016-02-17

Durum wheat (Triticum turgidum L.) is a cereal crop widely grown in the Mediterranean regions; the amber grain is mainly used for the production of pasta, couscous and typical breads. Single nucleotide polymorphism (SNP) detection technologies and high-throughput mutation induction represent a new challenge in wheat breeding to identify allelic variation in large populations. The TILLING strategy makes use of traditional chemical mutagenesis followed by screening for single base mismatches to identify novel mutant loci. Although TILLING has been combined to several sensitive pre-screening methods for SNP analysis, most rely on expensive equipment. Recently, a new low cost and time saving DHPLC protocol has been used in molecular human diagnostic to detect unknown mutations. In this work, we developed a new durum wheat TILLING population (cv. Marco Aurelio) using 0.70-0.85% ethyl methane sulfonate (EMS). To investigate the efficiency of the mutagenic treatments, a pilot screening was carried out on 1,140 mutant lines focusing on two target genes (Lycopene epsilon-cyclase, ε-LCY, and Lycopene beta-cyclase, β-LCY) involved in carotenoid metabolism in wheat grains. We simplify the heteroduplex detection by two low cost methods: the enzymatic cleavage (CelI)/agarose gel technique and the denaturing high-performance liquid chromatography (DHPLC). The CelI/agarose gel approach allowed us to identify 31 mutations, whereas the DHPLC procedure detected a total of 46 mutations for both genes. All detected mutations were confirmed by direct sequencing. The estimated overall mutation frequency for the pilot assay by the DHPLC methodology resulted to be of 1/77 kb, representing a high probability to detect interesting mutations in the target genes. We demonstrated the applicability and efficiency of a new strategy for the detection of induced variability. We produced and characterized a new durum wheat TILLING population useful for a better understanding of key gene functions. The availability of this tool together with TILLING technique will expand the polymorphisms in candidate genes of agronomically important traits in wheat.

Evaluation of the slurry management strategy and the integration of the composting technology in a pig farm - Agronomical and environmental implications.

PubMed

Sáez, José A; Clemente, Rafael; Bustamante, M Ángeles; Yañez, David; Bernal, M Pilar

2017-05-01

The changes in livestock production systems towards intensification frequently lead to an excess of manure generation with respect to the agricultural land available for its soil application. However, treatment technologies can help in the management of manures, especially in N-surplus areas. An integrated slurry treatment system based on solid-liquid separation, aerobic treatment of the liquid and composting the solid fraction was evaluated in a pig farm (sows and piglets) in the South of Spain. Solid fraction separation using a filter band connected to a screw press had low efficiency (38%), which was greatly improved incorporating a rotatory sieve (61%). The depuration system was very efficient for the liquid, with total removal of 84% total solids, 87% volatile solids, and 98% phosphorus. Two composting systems were tested through mechanical turning of: 1- a mixture of solid fraction stored for 1 month after solid-liquid separation and cereal straw; 2- recently-separated solid fraction mixed with cotton gin waste. System 2 was recommended for the farm, as it exhibited a fast temperature rise and a long thermophilic phase to ensure compost sanitisation, and high recovery of nutrients (TN 77%, P and K > 85%) and organic matter (45%). The composts obtained were mature, stable and showed a high degree of humification of their organic matter, absence of phytotoxicity and concentrations of nutrients similar to other composts from pig manure or separated slurry solids. However, the introduction of slurry from piglets into the solid-liquid separation system should be avoided in order to reduce the content of Zn in the compost, which lowers its quality. The slurry separation followed by composting of the solid fraction using a passive windrow system, and aeration of the liquid phase, was the most recommendable procedure for the reduction of GHG emissions on the farm. Copyright © 2017 Elsevier Ltd. All rights reserved.

Biochar from Biomass and its Potential Agronomic and Environmental Use in Washington: A Promising Alternative to Drawdown Carbon from the Atmosphere and Develop a New Industry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amonette, James E.; Garcia-Perez, Manuel; Sjoding, David

2016-03-04

Climate change is one of the most serious issues facing the world today. Increasing concentrations of carbon dioxide (CO 2) and other long-lived greenhouse gases (GHGs) in the atmosphere continue to warm the planet and destabilize the climate. It has been estimated that the impact from this warming could cost the state 10 billion per year by 2020, and 16 billion per year by 2040. Long-term solutions to the climate problem likely will require that large quantities of CO 2 be removed from the atmosphere. In fact, massive CO 2 drawdowns from the atmosphere have occurred in earth’s recent pastmore » from events occurring in our hemisphere. Studies of those analogs provide insight into the potential magnitude for specific actions to drawdown significant CO 2 from the atmosphere. One of these potential actions is the large-scale production of biochar from abundant woody biomass waste and its storage in soils, where it remains stable for hundreds to thousands of years. Moreover, for the carbon emission intensity of Washington’s fuel mix, biochar production from biomass is twice as effective in offsetting GHG emissions as complete biomass combustion of the same biomass. Washington State has large quantities of wood waste biomass that could be purposed for production of combined heat/power/biochar (CHPB) through existing biomass boilers. We propose to 1) evaluate the quantities of Washington wood waste biomass, 2) inventory existing boiler capacity and assess the technical merits and challenges to repurpose the boilers to CHPB, and 3) apply literature values and analog biochar examples to better quantify the extent of CO 2 drawdown that could be achieved in Washington State over the next century using engineered biochar. This white paper explores the potential to replicate the historical drawdowns of atmospheric CO 2, a topic the authors think should be part of current climate-change mitigation discussions. This document is a companion to a white paper titled Biochar from Wood Biomass and Agricultural Residues and its Potential Agronomic Use in Washington: A Tool to Improve Irrigation Water Use Efficiency, Energy Efficiency and Sequester Carbon (Amonette, et al., 2016, in preparation).« less

Applied Mathematics for agronomical engineers in Spain at UPM

NASA Astrophysics Data System (ADS)

Anton, J. M.; Grau, J. B.; Tarquis, A. M.; Fabregat, J.; Sanchez, M. E.

2009-04-01

Mathematics, created or discovered, are a global human conceptual endowment, containing large systems of knowledge, and varied skills to use definite parts of them, in creation or discovery, or for applications, e.g. in Physics, or notably in engineering behaviour. When getting upper intellectual levels in the 19th century, the agronomical science and praxis was noticeably or mainly organised in Spain in agronomical engineering schools and also in institutes, together with technician schools, also with different lower lever centres, and they have evolved with progress and they are much changing at present to a EEES schema (Bolonia process). They work in different lines that need some basis or skills from mathematics. The vocation to start such careers, that have varied curriculums, contains only some mathematics, and the number of credits for mathematics is restrained because time is necessary for other initial sciences such as applied chemistry, biology, ecology and soil sciences, but some basis and skill of maths are needed, also with Physics, at least for electricity, machines, construction, economics at initial ground levels, and also for Statistics that are here considered part of Applied Mathematics. The ways of teaching mathematical basis and skills are especial, and are different from the practical ways needed e. g. for Soil Sciences, and they involve especial efforts from students, and especial controls or exams that guide much learning. The mathematics have a very large accepted content that uses mostly a standard logic, and that is remarkably stable and international, rather similar notation and expressions being used with different main languages. For engineering the logical basis is really often not taught, but the use of it is transferred, especially for calculus that requires both adapted somehow simplified schemas and the learning of a specific skill to use it, and also for linear algebra. The basic forms of differential calculus in several variables are an example, maybe since Leibnitz, of the difficulty of balance rigor and usefulness in limited hours of teaching. In part engineers use of mathematics with manuals and now with computers that use packages, general (MAPLE, MATLAB, may be MATHCAD, et. C. ) or specific, such as for Statistics, Topography, Structural design, Hydraulics, specific Machines,…, and mostly the details of the algorithms are hidden, but the engineer must have in mind the basic mathematical schemas justifying what he is constructing with these tools, the PC being also used for organisation and drawing. The engineers must adapt to the evolution of these packages and computers that get much changed and improved in five or ten years, quicker than the specific engineering environment, and a clear idea of the much more stable mathematical structures behind gives a solid mental ground for that. An initiation to using computers also with a mathematical structure behind is necessary, to be followed in professional life. A specific actualisation of mathematical knowledge is often necessary for some new applications.

Novel manure management technologies in no-till and forage introduction to the special series.

PubMed

Maguire, Rory O; Kleinman, Peter J A; Beegle, Douglas B

2011-01-01

Surface application of manures leaves nitrogen (N) and phosphorus (P) susceptible to being lost in runoff, and N can also be lost to the atmosphere through ammonia (IH3) volatilization. Tillage immediately after surface application of manure moves manure nutrients under the soil surface, where they are less vulnerable to runoff and volatilization loss. Tillage, however, destroys soil structure, can lead to soil erosion, and is incompatible with forage and no-till systems. A variety of technologies are now available to place manure nutrients under the soil surface, but these are not widely used as surface broadcasting is cheap and long established as the standard method for land application of manure. This collection of papers includes agronomic, environmental, and economic assessments of subsurface manure application technologies, many of which clearly show benefits when comparedwith surface broadcasting. However, there remain significant gaps in our current knowledge, some related to the site-specific nature of technological performance, others related to the nascent and incomplete nature of the assessment process. Thus, while we know that we can improve land application of manure and the sustainability of farming systems with alternatives to surface broadcasting, many questions remain concerning which technologies work best for particular soils, manure types, and farming and cropping systems.

Indispensable role of biochar-inherent mineral constituents in its environmental applications: A review.

PubMed

Xu, Xiaoyun; Zhao, Yinghao; Sima, Jingke; Zhao, Ling; Mašek, Ondřej; Cao, Xinde

2017-10-01

Biochar typically consists of both carbon and mineral fractions, and the carbon fraction has been generally considered to determine its properties and applications. Recently, an increasing body of research has demonstrated that mineral components inherent in biochar, such as alkali or alkaline earth metals in the form of carbonates, phosphates, or oxides, could also influence the properties and thus the applications. The review articles published thus far have mainly focused on multiple environmental and agronomic applications of biochar, including carbon sequestration, soil improvement, environmental remediation, etc. This review aims to highlight the indispensable role of the mineral fraction of biochar in these different applications, especially in environmental applications. Specifically, it provides a critical review of current research findings related to the mineral composition of biochar and the effect of the mineral fraction on the physicochemical properties, contaminant sorption, carbon retention and stability, and nutrient bioavailability of biochar. Furthermore, the role of minerals in the emerging applications of biochar, as a precursor for fuel cells, supercapacitors, and photoactive components, is also summarized. Overall, inherent minerals should be fully considered while determining the most appropriate application for any given biochar. A thorough understanding of the role of biochar-bound minerals in different applications will also allow the design or selection of the most suitable biochar for specific applications based on the consideration of feedstock composition, production parameters, and post-treatment. Copyright © 2017 Elsevier Ltd. All rights reserved.

Increasing the source/sink ratio in Vitis vinifera (cv Sangiovese) induces extensive transcriptome reprogramming and modifies berry ripening

PubMed Central

2011-01-01

Background Cluster thinning is an agronomic practice in which a proportion of berry clusters are removed from the vine to increase the source/sink ratio and improve the quality of the remaining berries. Until now no transcriptomic data have been reported describing the mechanisms that underlie the agronomic and biochemical effects of thinning. Results We profiled the transcriptome of Vitis vinifera cv. Sangiovese berries before and after thinning at veraison using a genome-wide microarray representing all grapevine genes listed in the latest V1 gene prediction. Thinning increased the source/sink ratio from 0.6 to 1.2 m2 leaf area per kg of berries and boosted the sugar and anthocyanin content at harvest. Extensive transcriptome remodeling was observed in thinned vines 2 weeks after thinning and at ripening. This included the enhanced modulation of genes that are normally regulated during berry development and the induction of a large set of genes that are not usually expressed. Conclusion Cluster thinning has a profound effect on several important cellular processes and metabolic pathways including carbohydrate metabolism and the synthesis and transport of secondary products. The integrated agronomic, biochemical and transcriptomic data revealed that the positive impact of cluster thinning on final berry composition reflects a much more complex outcome than simply enhancing the normal ripening process. PMID:22192855

Agronomic and chemical evaluation of smooth sumac, Rhus glabra

DOE Office of Scientific and Technical Information (OSTI.GOV)

Campbell, T.A.

Smooth sumac (Rhus glabra) is a potential whole-plant source of polyphenol and oil. In a 2-yr evaluation of progenies from 14 Maryland, 1 northern Virginia, and 2 Georgia populations, highly significant variation (1% level) in vigor, number of plants surviving the seeding year, dry matter yield the seeding year, and number of tillers produced the second year was observed. In 15 entries, highly significant variation (1% level) in polyphenol + oil and in gallotannins was observed. Dry matter yields, extrapolated to Mg ha/sup -1/, ranged from 0.02 to 1.4 (for a single harvest), % polyphenol + oil from 19.4-31.1, andmore » % gallotannins (a class of polyphenols) from 9.8 to 15.7. It is suggested that significantly improved lines could be developed through breeding. Based on estimated ratios of sigma/sup 2//sub Entries//sigma/sup 2//sub Entries/ + sigma/sup 2/, genetic variation for most agronomic traits could be estimated with fair precision whereas variation for chemical traits could be affected substantially by nongenetic factors. Factor analysis indicated plants that would perform reasonably well over a 2-yr period could be selected on the basis of early seeding-year vigor scores. Selection for high amount of polyphenol + oil and gallotannins would have to be done independently of agronomic selection. Cutting frequencies should not exceed 2 x yr/sup -1/ or serious stand loss would occur.« less

Molecular and phenotypic characterization of transgenic wheat and sorghum events expressing the barley alanine aminotransferase.

PubMed

Peña, Pamela A; Quach, Truyen; Sato, Shirley; Ge, Zhengxiang; Nersesian, Natalya; Dweikat, Ismail M; Soundararajan, Madhavan; Clemente, Tom

2017-12-01

The expression of a barley alanine aminotransferase gene impacts agronomic outcomes in a C3 crop, wheat. The use of nitrogen-based fertilizers has become one of the major agronomic inputs in crop production systems. Strategies to enhance nitrogen assimilation and flux in planta are being pursued through the introduction of novel genetic alleles. Here an Agrobacterium-mediated approach was employed to introduce the alanine aminotransferase from barley (Hordeum vulgare), HvAlaAT, into wheat (Triticum aestivum) and sorghum (Sorghum bicolor), regulated by either constitutive or root preferred promoter elements. Plants harboring the transgenic HvAlaAT alleles displayed increased alanine aminotransferase (alt) activity. The enhanced alt activity impacted height, tillering and significantly boosted vegetative biomass relative to controls in wheat evaluated under hydroponic conditions, where the phenotypic outcome across these parameters varied relative to time of year study was conducted. Constitutive expression of HvAlaAT translated to elevation in wheat grain yield under field conditions. In sorghum, expression of HvAlaAT enhanced enzymatic activity, but no changes in phenotypic outcomes were observed. Taken together these results suggest that positive agronomic outcomes can be achieved through enhanced alt activity in a C3 crop, wheat. However, the variability observed across experiments under greenhouse conditions implies the phenotypic outcomes imparted by the HvAlaAT allele in wheat may be impacted by environment.

Understanding Arsenic Dynamics in Agronomic Systems to ...

EPA Pesticide Factsheets

This review is on arsenic in agronomic systems, and covers processes that influence the entry of arsenic into the human food supply. The scope is from sources of arsenic (natural and anthropogenic) in soils, biogeochemical and rhizosphere processes that control arsenic speciation and availability, through to mechanisms of uptake by crop plants and potential mitigation strategies. This review makes a case for taking steps to prevent or limit crop uptake of arsenic, wherever possible, and to work toward a long-term solution to the presence of arsenic in agronomic systems. The past two decades have seen important advances in our understanding of how biogeochemical and physiological processes influence human exposure to soil arsenic, and thus must now prompt an informed reconsideration and unification of regulations to protect the quality of agricultural and residential soils. Consumption of staple foods such as rice, beverages such as apple juice, or vegetables grown in historically arsenic-contaminated soils is now recognized as a tangible route of arsenic exposure that, in many cases, is more significant than exposure from drinking water. Understanding the sources of arsenic to crop plants and the factors that influence them is key to reducing exposure now and preventing exposure in future. In addition to the abundant natural sources of arsenic, there are a large number of industrial and agricultural sources of arsenic to the soil; from mining wastes, coal fly

A carotenogenic mini-pathway introduced into white corn does not affect development or agronomic performance

PubMed Central

Zanga, Daniela; Capell, Teresa; Slafer, Gustavo A.; Christou, Paul; Savin, Roxana

2016-01-01

High-carotenoid corn (Carolight®) has been developed as a vehicle to deliver pro-vitamin A in the diet and thus address vitamin A deficiency in at-risk populations in developing countries. Like any other novel crop, the performance of Carolight® must be tested in different environments to ensure that optimal yields and productivity are maintained, particularly in this case to ensure that the engineered metabolic pathway does not attract a yield penalty. Here we compared the performance of Carolight® with its near isogenic white corn inbred parental line under greenhouse and field conditions, and monitored the stability of the introduced trait. We found that Carolight® was indistinguishable from its near isogenic line in terms of agronomic performance, particularly grain yield and its main components. We also established experimentally that the functionality of the introduced trait was indistinguishable when plants were grown in a controlled environment or in the field. Such thorough characterization under different agronomic conditions is rarely performed even for first-generation traits such as herbicide tolerance and pest resistance, and certainly not for complex second-generation traits such as the metabolic remodeling in the Carolight® variety. Our results therefore indicate that Carolight® can now be incorporated into breeding lines to generate hybrids with locally adapted varieties for further product development and assessment. PMID:27922071

Functional Roles of microRNAs in Agronomically Important Plants—Potential as Targets for Crop Improvement and Protection

PubMed Central

Djami-Tchatchou, Arnaud T.; Sanan-Mishra, Neeti; Ntushelo, Khayalethu; Dubery, Ian A.

2017-01-01

MicroRNAs (miRNAs) are a class of small non-coding RNAs that have recently emerged as important regulators of gene expression, mainly through cleavage and/or translation inhibition of the target mRNAs during or after transcription. miRNAs play important roles by regulating a multitude of biological processes in plants which include maintenance of genome integrity, development, metabolism, and adaptive responses toward environmental stresses. The increasing population of the world and their food demands requires focused efforts for the improvement of crop plants to ensure sustainable food production. Manipulation of mRNA transcript abundance via miRNA control provides a unique strategy for modulating differential plant gene expression and miRNAs are thus emerging as the next generation targets for genetic engineering for improvement of the agronomic properties of crops. However, a deeper understanding of its potential and the mechanisms involved will facilitate the design of suitable strategies to obtain the desirable traits with minimum trade-offs in the modified crops. In this regard, this review highlights the diverse roles of conserved and newly identified miRNAs in various food and industrial crops and recent advances made in the uses of miRNAs to improve plants of agronomically importance so as to significantly enhance crop yields and increase tolerance to various environmental stress agents of biotic—or abiotic origin. PMID:28382044

Correlation, path analysis and heritability estimation for agronomic traits contribute to yield on soybean

NASA Astrophysics Data System (ADS)

Sulistyo, A.; Purwantoro; Sari, K. P.

2018-01-01

Selection is a routine activity in plant breeding programs that must be done by plant breeders in obtaining superior plant genotypes. The use of appropriate selection criteria will determine the effectiveness of selection activities. The purpose of this study was to analysis the inheritable agronomic traits that contribute to soybean yield. A total of 91 soybean lines were planted in Muneng Experimental Station, Probolinggo District, East Java Province, Indonesia in 2016. All soybean lines were arranged in randomized complete block design with two replicates. Correlation analysis, path analysis and heritability estimation were performed on days to flowering, days to maturing, plant height, number of branches, number of fertile nodes, number of filled pods, weight of 100 seeds, and yield to determine selection criteria on soybean breeding program. The results showed that the heritability value of almost all agronomic traits observed is high except for the number of fertile nodes with low heritability. The result of correlation analysis shows that days to flowering, plant height and number of fertile nodes have positive correlation with seed yield per plot (0.056, 0.444, and 0.100, respectively). In addition, path analysis showed that plant height and number of fertile nodes have highest positive direct effect on soybean yield. Based on this result, plant height can be selected as one of selection criteria in soybean breeding program to obtain high yielding soybean variety.

A carotenogenic mini-pathway introduced into white corn does not affect development or agronomic performance.

PubMed

Zanga, Daniela; Capell, Teresa; Slafer, Gustavo A; Christou, Paul; Savin, Roxana

2016-12-06

High-carotenoid corn (Carolight®) has been developed as a vehicle to deliver pro-vitamin A in the diet and thus address vitamin A deficiency in at-risk populations in developing countries. Like any other novel crop, the performance of Carolight® must be tested in different environments to ensure that optimal yields and productivity are maintained, particularly in this case to ensure that the engineered metabolic pathway does not attract a yield penalty. Here we compared the performance of Carolight® with its near isogenic white corn inbred parental line under greenhouse and field conditions, and monitored the stability of the introduced trait. We found that Carolight® was indistinguishable from its near isogenic line in terms of agronomic performance, particularly grain yield and its main components. We also established experimentally that the functionality of the introduced trait was indistinguishable when plants were grown in a controlled environment or in the field. Such thorough characterization under different agronomic conditions is rarely performed even for first-generation traits such as herbicide tolerance and pest resistance, and certainly not for complex second-generation traits such as the metabolic remodeling in the Carolight® variety. Our results therefore indicate that Carolight® can now be incorporated into breeding lines to generate hybrids with locally adapted varieties for further product development and assessment.

Synthesis and chemical characterization of the novel agronomically relevant pentadentate chelate 2-(2-((2-hydroxybenzyl)amino)ethylamino)-2-(2-hydroxyphenyl)acetic acid (DCHA).

PubMed

López-Rayo, Sandra; Hernández, Diana; Lucena, Juan J; Escudero, Rosa; Gómez-Gallego, Mar; Sierra, Miguel A

2010-07-14

Iron chelates analogous to o,o-EDDHA/Fe(3+) are the fertilizers chosen to treat iron chlorosis in plants growing on calcareous soil. The isomer o,p-EDDHA/Fe(3+) presents less stability but faster assimilation by the plant than o,o-EDDHA/Fe(3+), because only five coordinating groups are able to complex Fe(3+). The new chelating agent 2-(2-((2-hydroxybenzyl)amino)ethylamino)-2-(2-hydroxyphenyl)acetic acid (DCHA) has been synthesized to obtain an iron fertilizer with intermediate stability between o,o-EDDHA/Fe(3+) and o,p-EDDHA/Fe(3+) and with fast assimilation. Its synthesis has been done starting from phenol, N-acetylethylendiamine, glyoxylic acid, and NaOH in a three-step sequence. The purity of the DCHA chelating agent, its protonation, and Ca(2+), Mg(2+), Fe(3+), and Cu(2+) stability constants, together with its ability to maintain iron in solution in different agronomic conditions, have been determined. The results indicate that the chelate DCHA/Fe(3+) has intermediate stability between those of o,o-EDDHA/Fe(3+) and o,p-EDDHA/Fe(3+) complexes and that it is capable of maintaining the Fe(3+) in agronomic conditions. This new chelating agent may be effective in correcting iron chlorosis in plants.

Plant height revertants of Dominant Semidwarf mutant rice created by low-energy ion irradiation

NASA Astrophysics Data System (ADS)

Liu, Binmei; Wu, Yuejin; Xu, Xue; Song, M.; Zhao, M.; Fu, X. D.

2008-04-01

Dominant Semidwarf mutant rice (Sdd) was obtained from its wild type (WT) by irradiation with a low-energy ion beam. Six tall revertants of Sdd were induced by irradiation. The revertants restored the plant height to that of WT plants. Investigation of the agronomic character and genetic analysis indicate that the revertants are similar to WT plants with putative different inherited mutations. The revertants were checked for DNA differences using the simple sequence repeat technique. Among 408 such primers used, only 2 primers detected mutation sites in the revertants, which provided the molecular evidence for the revertants induced from Sdd. This study indicates that ion irradiation may be used as a mutagen to create revertants for plant architecture studies and could be a new application.

Use of prolines for improving growth and/or yield

DOEpatents

Unkefer, Pat J; Martinez, Rodolfo A; Knight, Thomas J

2013-10-08

The present invention describes a composition including a mixture of L- and D-pyroglutamate stereoisomers in a ratio of L to D of from about 80:20 to about 97:3, and, a carrier medium for application of the L- and D-pyroglutamate stereoisomers to a target plant. The composition can also be used as a germination medium and may be incorporated into a seed coat for assisting in germination. The present invention further describes a method of increasing the agronomic performance of a target plant by treating a target plant with a composition including a mixture of L- and D-pyroglutamate stereoisomers in a ratio of L to D of from about 80:20 to about 97:3 and a carrier medium for said L- and D-pyroglutamate stereoisomers.

Use of prolines for improving growth and/or yield

DOEpatents

Unkefer, Pat J.; Martinez, Rodolfo A.; Knight, Thomas J.

2014-08-12

The present invention describes a composition including a mixture of L- and D-pyroglutamate stereoisomers in a ratio of L to D of from about 80:20 to about 97:3 , and, a carrier medium for application of the L- and D-pyroglutamate stereoisomers to a target plant. The composition can also be used as a germination medium and may be incorporated into a seed coat for assisting in germination. The present invention further describes a method of increasing the agronomic performance of a target plant by treating a target plant with a composition including a mixture of L- and D-pyroglutamate stereoisomers in a ratio of L to D of from about 80:20 to about 97:3 and a carrier medium for said L- and D-pyroglutamate stereoisomers.

Recent Advances in the Genetic Transformation of Coffee

PubMed Central

Mishra, M. K.; Slater, A.

2012-01-01

Coffee is one of the most important plantation crops, grown in about 80 countries across the world. The genus Coffea comprises approximately 100 species of which only two species, that is, Coffea arabica (commonly known as arabica coffee) and Coffea canephora (known as robusta coffee), are commercially cultivated. Genetic improvement of coffee through traditional breeding is slow due to the perennial nature of the plant. Genetic transformation has tremendous potential in developing improved coffee varieties with desired agronomic traits, which are otherwise difficult to achieve through traditional breeding. During the last twenty years, significant progress has been made in coffee biotechnology, particularly in the area of transgenic technology. This paper provides a detailed account of the advances made in the genetic transformation of coffee and their potential applications. PMID:22970380

Interaction of metal oxide nanoparticles with higher terrestrial plants: Physiological and biochemical aspects.

PubMed

Du, Wenchao; Tan, Wenjuan; Peralta-Videa, Jose R; Gardea-Torresdey, Jorge L; Ji, Rong; Yin, Ying; Guo, Hongyan

2017-01-01

Multiple applications of metal oxide nanoparticles (MONPs) could result in their accumulation in soil, threatening higher terrestrial plants. Several reports have shown the effects of MONPs on plants. In this review, we analyze the most recent reports about the physiological and biochemical responses of plants to stress imposed by MONPs. Findings demonstrate that MONPs may be taken up and accumulated in plant tissues causing adverse or beneficial effects on seed germination, seedling elongation, photosynthesis, antioxidative stress response, agronomic, and yield characteristics. Given the importance of determining the potential risks of MONPs on crops and other terrestrial higher plants, research questions about field long-term conditions, transgenernational phytotoxicity, genotype specific sensitivity, and combined pollution problems should be considered. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

[Effects of different fertilization modes on vegetable growth, fertilizer nitrogen utilization, and nitrogen loss from vegetable field].

PubMed

Huang, Dong-feng; Wang, Guo; Li, Wei-hua; Qiu, Xiao-xuan

2009-03-01

A field experiment with Chinese cabbage, water spinach, and three-colored amaranth cropped three times in one year was conducted to study the effects of seven fertilization modes, i.e., none fertilization, basal application of chemical fertilizers, 1/2 basal application and 1/2 top-dressing of chemical fertilizers, basal application of chemical fertilizers and dicyandiamide, 1/2 basal application and 1/2 top-dressing of chemical fertilizers and dicyandiamide, 1/2 basal application and 1/2 top-dressing of chemical fertilizers and organic manure, and basal application of organic manure, on the plant height, yield, nitrogen accumulation, and fertilizer nitrogen utilization of the vegetables, and the loss of NO3- -N and NH4+ -N from vegetable field under natural rainfall condition. The results showed that comparing with none fertilization, the fertilization modes '1/2 basal application and 1/2 top-dressing of chemical fertilizers and organic manure' and 'basal application of chemical fertilizers and dicyandiamide' improved the agronomic properties of test vegetables, increased their yields by 103%-219% and 93%-226%, and nitrogen accumulation by 153% -216% and 231%-320%, respectively, and enhanced fertilizer nitrogen utilization rate. They also decreased the surface runoff loss of NO3- -N and NH4+ -N by 48.1% and 46.5%, respectively, compared with the mode 'basal application of chemical fertilizers', and hence, reduced the risk of agricultural non-point pollution. Therefore, these two fertilization modes could be popularized in vegetable production.

Long-Term Exposure of Agricultural Soil to Veterinary Antibiotics Changes the Population Structure of Symbiotic Nitrogen-Fixing Rhizobacteria Occupying Nodules of Soybeans (Glycine max).

PubMed

Revellin, Cécile; Hartmann, Alain; Solanas, Sébastien; Topp, Edward

2018-05-01

Antibiotics are entrained in agricultural soil through the application of manures from medicated animals. In the present study, a series of small field plots was established in 1999 that receive annual spring applications of a mixture of tylosin, sulfamethazine, and chlortetracycline at concentrations ranging from 0.1 to 10 mg · kg -1 soil. These antibiotics are commonly used in commercial swine production. The field plots were cropped continuously for soybeans, and in 2012, after 14 annual antibiotic applications, the nodules from soybean roots were sampled and the occupying bradyrhizobia were characterized. Nodules and isolates were serotyped, and isolates were distinguished using 16S rRNA gene and 16S to 23S rRNA gene intergenic spacer region sequencing, multilocus sequence typing, and RSα fingerprinting. Treatment with the antibiotic mixture skewed the population of bradyrhizobia dominating the nodule occupancy, with a significantly larger proportion of Bradyrhizobium liaoningense organisms even at the lowest dose of 0.1 mg · kg -1 soil. Likewise, all doses of antibiotics altered the distribution of RSα fingerprint types. Bradyrhizobia were phenotypically evaluated for their sensitivity to the antibiotics, and there was no association between in situ treatment and a decreased sensitivity to the drugs. Overall, long-term exposure to the antibiotic mixture altered the composition of bradyrhizobial populations occupying nitrogen-fixing nodules, apparently through an indirect effect not associated with the sensitivity to the drugs. Further work evaluating agronomic impacts is warranted. IMPORTANCE Antibiotics are entrained in agricultural soil through the application of animal or human waste or by irrigation with reused wastewater. Soybeans obtain nitrogen through symbiotic nitrogen fixation. Here, we evaluated the impact of 14 annual exposures to antibiotics commonly used in swine production on the distribution of bradyrhizobia occupying nitrogen-fixing nodules on soybean roots in a long-term field experiment. By means of various sequencing and genomic fingerprinting techniques, the repeated exposure to a mixture of tylosin, sulfamethazine, and chlortetracycline each at a nominal soil concentration of 0.1 mg · kg -1 soil was found to modify the diversity and identity of bradyrhizobia occupying the nodules. Nodule occupancy was not associated with the level of sensitivity to the antibiotics, indicating that the observed effects were not due to the direct toxicity of the antibiotics on bradyrhizobia. Altogether, these results indicate the potential for long-term impacts of antibiotics on this agronomically important symbiosis. © Crown copyright 2018.

Courtney E. Payne | NREL

Science.gov Websites

improved and higher throughput methods for analysis of biomass feedstocks Agronomics-using NIR spectroscopy in-house and external client training. She has also developed improved and high-throughput methods

Dissipation of contaminants of emerging concern in biosolids applied to non-irrigated farmland in eastern Colorado

USGS Publications Warehouse

Yager, Tracy; Furlong, Edward T.; Kolpin, Dana W.; Kinney, Chad A.; Zaugg, Steven D.; Burkhardt, Mark R.

2013-01-01

In 2007, a 1.5-year field-scale study was initiated by the U.S. Geological Survey to evaluate the dissipation of contaminants of emerging concern (CECs) following a first agronomic biosolids application to nonirrigated farmland. CECs with the greatest decrease in concentration in the surface biosolids at 180 days post-application included indole, d-limonene, p-cresol, phenol, and skatol. CECs that were present in the largest concentration in 180-day-weathered biosolids included stanols, nonylphenols, bisphenol A, bis(2-ethylhexyl) phthalate, hexahydrohexamethyl cyclopenta-benzopyran (HHCB), and triclosan. CECs that were detected in pre-application soil were 3-beta coprostanol, skatol, acetophenone, beta-sitosterol, beta-stigmastanol, cholesterol, indole, p-cresol, and phenol, most of which are biogenic sterols or fragrances that have natural plant sources in addition to anthropogenic sources, yet their concentrations increased (in some cases, substantially) following biosolids application. Preliminary data indicate the nonylphenols (including NPEO1, NPEO2), OPEO1, benzo[a]pyrene, diethyl phthalate, d-limonene, HHCB, triclosan, and possibly 3-beta coprostanol, skatol, beta-sitosterol, cholesterol, indole, and p-cresol, migrated downward through the soil by 468 days post-application, but indicated little uptake by mature wheat plants. This study indicates that some CECs are sufficiently persistent and mobile to be vertically transported into the soil column following biosolids applications to the land surface, even in semiarid regions.

Agronomic performance of new open pollinated experimental lines of broccoli (Brassica oleracea L. var. italica) evaluated under organic farming

PubMed Central

Moehring, Jens; Zikeli, Sabine; Fleck, Michael; Claupein, Wilhelm; Graeff-Hoenninger, Simone

2018-01-01

In order to develop new open pollinating cultivars of broccoli for organic farming, two experiments were conducted during fall 2015 and spring 2016. This study was aimed at comparing the agronomic performance of eleven new open pollinating breeding lines of broccoli to introduce new lines and to test their seasonal suitability for organic farming. Field experiments were carried out at the organic research station Kleinhohenheim of the University of Hohenheim (Stuttgart-Germany). Different agronomic traits total biomass fresh weight, head fresh weight, head diameter, hollow-stem, fresh weight harvest index and marketable yield were assessed together with commercial control cultivars. The data from both experiments were analyzed using a two-stage mixed model approach. In our study, genotype, growing season and their interaction had significant effects on most traits. Plants belonging to the fall growing season had bigger sizes in comparison to spring with significantly (p< 0.0001) higher biomass fresh weight. Some experimental lines had significant lower head fresh weight in spring in comparison to the fall season. The high temperature during the harvest period for the spring season affected the yield negatively through decreasing the firmness of broccoli heads. The low average minimum temperatures during the spring growing season lead to low biomass fresh weight but high fresh weight harvest index. Testing the seasonal suitability of all open pollinating lines showed that the considered fall season was better for broccoli production. However, the change in yield between the fall and the spring growing season was not significant for “Line 701” and “CHE-MIC”. Considering the expression of different agronomic traits, “CHE-GRE-G”, “Calinaro” and “CAN-SPB” performed the best in the fall growing season, and “CHE-GRE-G”, “CHE-GRE-A”, “CHE-BAL-A” and “CHE-MIC” and “Line 701” were best in the spring growing season, specifically due to the highest marketable yield and proportion of marketable heads. PMID:29738530

Maize yield gaps caused by non-controllable, agronomic, and socioeconomic factors in a changing climate of Northeast China.

PubMed

Liu, Zhijuan; Yang, Xiaoguang; Lin, Xiaomao; Hubbard, Kenneth G; Lv, Shuo; Wang, Jing

2016-01-15

Closing the gap between current and potential yields is one means of increasing agricultural production to feed the globally increasing population. Therefore, investigation of the geographic patterns, trends and causes of crop yield gaps is essential to identifying where yields might be increased and quantifying the contributions of yield-limiting factors that may provide us potentials to enhance crop productivity. In this study, the changes in potential yields, attainable yields, potential farmers' yields, and actual farmers' yields during the past five decades in Northeast China (NEC) were investigated. Additionally the yield gaps caused by non-controllable, agronomic, and socioeconomic factors were determined. Over the period 1961 to 2010 the estimated regional area-weighted mean maize potential yield, attainable yield, and potential farmers' yield were approximately 12.3 t ha(-1), 11.5 t ha(-1), and 6.4 t ha(-1) which showed a decreasing tendency. The actual farmers' yield over NEC was 4.5 t ha(-1), and showed a tendency to increase (p<0.01) by 1.27 t ha(-1) per decade. The regional mean total yield gap (YGt), weighted by the area in each county dedicated to maize crop, was 64% of potential yield. Moreover, 8, 40, and 16% reductions in potential yields were due to non-controllable factors (YGI), agronomic factors (YGII), and socioeconomic factors (YGIII), respectively. Therefore, the exploitable yield gap, considered here as the difference between the potential yield and what one can expect considering non-controllable factors (i.e. YGt-YGI), of maize in NEC was about 56%. The regional area-weighted averages of YGt, and YGIII were found to have significant decreases of 11.0, and 10.7% per decade. At the time horizon 2010, the exploitable yield gaps were estimated to equal 36% of potential yield. This led to the conclusion that the yield gap could be deeply reduced by improving local agronomic management and controlling socioeconomic factors. Copyright © 2015 Elsevier B.V. All rights reserved.

Rice Molecular Breeding Laboratories in the Genomics Era: Current Status and Future Considerations

PubMed Central

Collard, Bert C. Y.; Vera Cruz, Casiana M.; McNally, Kenneth L.; Virk, Parminder S.; Mackill, David J.

2008-01-01

Using DNA markers in plant breeding with marker-assisted selection (MAS) could greatly improve the precision and efficiency of selection, leading to the accelerated development of new crop varieties. The numerous examples of MAS in rice have prompted many breeding institutes to establish molecular breeding labs. The last decade has produced an enormous amount of genomics research in rice, including the identification of thousands of QTLs for agronomically important traits, the generation of large amounts of gene expression data, and cloning and characterization of new genes, including the detection of single nucleotide polymorphisms. The pinnacle of genomics research has been the completion and annotation of genome sequences for indica and japonica rice. This information—coupled with the development of new genotyping methodologies and platforms, and the development of bioinformatics databases and software tools—provides even more exciting opportunities for rice molecular breeding in the 21st century. However, the great challenge for molecular breeders is to apply genomics data in actual breeding programs. Here, we review the current status of MAS in rice, current genomics projects and promising new genotyping methodologies, and evaluate the probable impact of genomics research. We also identify critical research areas to “bridge the application gap” between QTL identification and applied breeding that need to be addressed to realize the full potential of MAS, and propose ideas and guidelines for establishing rice molecular breeding labs in the postgenome sequence era to integrate molecular breeding within the context of overall rice breeding and research programs. PMID:18528527

Long term agronomic and environmental effects of irrigation with reclaimed wastewater

NASA Astrophysics Data System (ADS)

Yermiyahu, Uri; Ben-Gal, Alon; Dag, Arnon

2014-05-01

Fresh water in the Mediterranean region is generally scarce and only low quality reclaimed wastewater (RWW) is available for irrigation. The aim of the present study was to evaluate the effect of irrigation with RWW on tree growth and productivity and to quantify nitrate and chloride (Cl) losses in an olive orchard. Three treatments were tested on two cultivars (Barnea and Leccino); fresh water with standard fertigation (Fr), recycled water with standard fertigation (Re) and recycled water with reduced fertigation (in accordance to the K and N available in the recycled water) (Re-). The total amount of nutrients arriving with the RWW was substantial; 100, 30, 150 kg ha-1 N, P, K, respectively, ca. half of the recommended fertilization dosages. Throughout the 6 experimental years, fertigation treatments did not influence nutrient status in leaves and did not affect fruit or oil production. While similar amounts of water were applied, the Re and Re- treatments loaded the soil profile with 1.75 times more Cl than the Fr treatment. Additionally, significantly more nitrates were transported out of the root zone in the Re treatment compared to Fr and Re- for both cultivars. The results indicate that recycled water can be used for olive oil irrigation with no negative effects on oil yield or quality. Irrigation with RWW increased salt loads into and beyond the root zone. The nutritional constituents in the RWW used to irrigate olives should be accounted for in order to increase fertilizer application efficiency and minimize the transport of salts and nutrients into groundwater.

Nitrate Paradigm Does Not Hold Up for Sugarcane

PubMed Central

Robinson, Nicole; Brackin, Richard; Vinall, Kerry; Soper, Fiona; Holst, Jirko; Gamage, Harshi; Paungfoo-Lonhienne, Chanyarat; Rennenberg, Heinz; Lakshmanan, Prakash; Schmidt, Susanne

2011-01-01

Modern agriculture is based on the notion that nitrate is the main source of nitrogen (N) for crops, but nitrate is also the most mobile form of N and easily lost from soil. Efficient acquisition of nitrate by crops is therefore a prerequisite for avoiding off-site N pollution. Sugarcane is considered the most suitable tropical crop for biofuel production, but surprisingly high N fertilizer applications in main producer countries raise doubt about the sustainability of production and are at odds with a carbon-based crop. Examining reasons for the inefficient use of N fertilizer, we hypothesized that sugarcane resembles other giant tropical grasses which inhibit the production of nitrate in soil and differ from related grain crops with a confirmed ability to use nitrate. The results of our study support the hypothesis that N-replete sugarcane and ancestral species in the Andropogoneae supertribe strongly prefer ammonium over nitrate. Sugarcane differs from grain crops, sorghum and maize, which acquired both N sources equally well, while giant grass, Erianthus, displayed an intermediate ability to use nitrate. We conclude that discrimination against nitrate and a low capacity to store nitrate in shoots prevents commercial sugarcane varieties from taking advantage of the high nitrate concentrations in fertilized soils in the first three months of the growing season, leaving nitrate vulnerable to loss. Our study addresses a major caveat of sugarcane production and affords a strong basis for improvement through breeding cultivars with enhanced capacity to use nitrate as well as through agronomic measures that reduce nitrification in soil. PMID:21552564

Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives

PubMed Central

Longhi, Sara; Giongo, Lara; Buti, Matteo; Surbanovski, Nada; Viola, Roberto; Velasco, Riccardo; Ward, Judson A; Sargent, Daniel J

2014-01-01

The Rosoideae is a subfamily of the Rosaceae that contains a number of species of economic importance, including the soft fruit species strawberry (Fragaria ×ananassa), red (Rubus idaeus) and black (Rubus occidentalis) raspberries, blackberries (Rubus spp.) and one of the most economically important cut flower genera, the roses (Rosa spp.). Molecular genetics and genomics resources for the Rosoideae have developed rapidly over the past two decades, beginning with the development and application of a number of molecular marker types including restriction fragment length polymorphisms, amplified fragment length polymorphisms and microsatellites, and culminating in the recent publication of the genome sequence of the woodland strawberry, Fragaria vesca, and the development of high throughput single nucleotide polymorphism (SNP)-genotyping resources for Fragaria, Rosa and Rubus. These tools have been used to identify genes and other functional elements that control traits of economic importance, to study the evolution of plant genome structure within the subfamily, and are beginning to facilitate genomic-assisted breeding through the development and deployment of markers linked to traits such as aspects of fruit quality, disease resistance and the timing of flowering. In this review, we report on the developments that have been made over the last 20 years in the field of molecular genetics and structural genomics within the Rosoideae, comment on how the knowledge gained will improve the efficiency of cultivar development and discuss how these advances will enhance our understanding of the biological processes determining agronomically important traits in all Rosoideae species. PMID:26504527

Biological Implications in Cassava for the Production of Amylose-Free Starch: Impact on Root Yield and Related Traits

PubMed Central

Karlström, Amanda; Calle, Fernando; Salazar, Sandra; Morante, Nelson; Dufour, Dominique; Ceballos, Hernán

2016-01-01

Cassava (Manihot esculenta, Crantz) is an important food security crop, but it is becoming an important raw material for different industrial applications. Cassava is the second most important source of starch worldwide. Novel starch properties are of interest to the starch industry, and one them is the recently identified amylose-free (waxy) cassava starch. Waxy mutants have been found in different crops and have been often associated with a yield penalty. There are ongoing efforts to develop commercial cassava varieties with amylose-free starch. However, little information is available regarding the biological and agronomic implications of starch mutations in cassava, nor in other root and tuber crops. In this study, siblings from eight full-sib families, segregating for the waxy trait, were used to determine if the mutation has implications for yield, dry matter content (DMC) and harvest index in cassava. A total of 87 waxy and 87 wild-type starch genotypes from the eight families were used in the study. The only significant effect of starch type was on DMC (p < 0.01), with waxy clones having a 0.8% lower content than their wild type counterparts. There was no effect of starch type on fresh root yield (FRY), adjusted FRY and harvest index. It is not clear if lower DMC is a pleiotropic effect of the waxy starch mutation or else the result of linked genes introgressed along with the mutation. It is expected that commercial waxy cassava varieties will have competitive FRYs but special efforts will be required to attain adequate DMCs. This study contributes to the limited knowledge available of the impact of starch mutations on the agronomic performance of root and tuber crops. PMID:27242813

Breaking conceptual locks in modelling root absorption of nutrients: reopening the thermodynamic viewpoint of ion transport across the root

PubMed Central

Le Deunff, Erwan; Malagoli, Philippe

2014-01-01

Background The top-down analysis of nitrate influx isotherms through the Enzyme-Substrate interpretation has not withstood recent molecular and histochemical analyses of nitrate transporters. Indeed, at least four families of nitrate transporters operating at both high and/or low external nitrate concentrations, and which are located in series and/or parallel in the different cellular layers of the mature root, are involved in nitrate uptake. Accordingly, the top-down analysis of the root catalytic structure for ion transport from the Enzyme-Substrate interpretation of nitrate influx isotherms is inadequate. Moreover, the use of the Enzyme-Substrate velocity equation as a single reference in agronomic models is not suitable in its formalism to account for variations in N uptake under fluctuating environmental conditions. Therefore, a conceptual paradigm shift is required to improve the mechanistic modelling of N uptake in agronomic models. Scope An alternative formalism, the Flow-Force theory, was proposed in the 1970s to describe ion isotherms based upon biophysical ‘flows and forces’ relationships of non-equilibrium thermodynamics. This interpretation describes, with macroscopic parameters, the patterns of N uptake provided by a biological system such as roots. In contrast to the Enzyme-Substrate interpretation, this approach does not claim to represent molecular characteristics. Here it is shown that it is possible to combine the Flow-Force formalism with polynomial responses of nitrate influx rate induced by climatic and in planta factors in relation to nitrate availability. Conclusions Application of the Flow-Force formalism allows nitrate uptake to be modelled in a more realistic manner, and allows scaling-up in time and space of the regulation of nitrate uptake across the plant growth cycle. PMID:25425406

Subsurface phosphorus transport through a no-till field in the semi arid Palouse region

NASA Astrophysics Data System (ADS)

Norby, J. C.; Brooks, E. S.; Strawn, D. G.

2017-12-01

Excess application of fertilizers containing nitrogen and phosphorus for farming use has led to ongoing water quality issues in the United States. When these nutrients leave agronomic systems, and enter water bodies in large quantities, algal bloom and eutrophication can occur. Extensive studies focusing on phosphorus as a pollutant from agronomic systems have been conducted in the many regions of the United States; however, there has been a lack of studies completed in the semiarid Palouse region of eastern Washington and western Idaho. The goal of this research study was to better understand how no-till farm management has altered soil P temporally and the current availability for off-site transport of P throughout an artificially drained catchment at the Cook Agronomy Farm in Pullman, WA. We also attempted to determine the processes responsible for subsurface flow of phosphorus, specifically through preferential flow pathways. Dissolved reactive P (DRP)concentrations of subsurface drainage from a artificial drain exceeded TMDL threshold concentrations during numerous seasonal high flow events over the two-year study time frame. Soil analyses show a highly variable distribution of water-extractable P across the sub-catchment area and initial results suggest a translocation of P species deeper into the soil profile after implementing no-till practices in 1998. We hypothesized that a greater network of macropores from lack of soil disturbance allow for preferential flow of nutrient-laden water deeper into the subsurface and to the artificial drain system. Simulated flow experiments on soil cores from the study site showed large-scale macropore development, extreme variability in soil conductivity, and high P adsorption potential for the soils, suggesting a disconnect between P movement through macropore soil and subsurface drainage water rich in DRP at the artificial drain line outlet.

An integrated crop model and GIS decision support system for assisting agronomic decision making under climate change.

PubMed

Kadiyala, M D M; Nedumaran, S; Singh, Piara; S, Chukka; Irshad, Mohammad A; Bantilan, M C S

2015-07-15

The semi-arid tropical (SAT) regions of India are suffering from low productivity which may be further aggravated by anticipated climate change. The present study analyzes the spatial variability of climate change impacts on groundnut yields in the Anantapur district of India and examines the relative contribution of adaptation strategies. For this purpose, a web based decision support tool that integrates crop simulation model and Geographical Information System (GIS) was developed to assist agronomic decision making and this tool can be scalable to any location and crop. The climate change projections of five global climate models (GCMs) relative to the 1980-2010 baseline for Anantapur district indicates an increase in rainfall activity to the tune of 10.6 to 25% during Mid-century period (2040-69) with RCP 8.5. The GCMs also predict warming exceeding 1.4 to 2.4°C by 2069 in the study region. The spatial crop responses to the projected climate indicate a decrease in groundnut yields with four GCMs (MPI-ESM-MR, MIROC5, CCSM4 and HadGEM2-ES) and a contrasting 6.3% increase with the GCM, GFDL-ESM2M. The simulation studies using CROPGRO-Peanut model reveals that groundnut yields can be increased on average by 1.0%, 5.0%, 14.4%, and 20.2%, by adopting adaptation options of heat tolerance, drought tolerant cultivars, supplemental irrigation and a combination of drought tolerance cultivar and supplemental irrigation respectively. The spatial patterns of relative benefits of adaptation options were geographically different and the greatest benefits can be achieved by adopting new cultivars having drought tolerance and with the application of one supplemental irrigation at 60days after sowing. Copyright © 2015 Elsevier B.V. All rights reserved.

Camelina sativa: An ideal platform for the metabolic engineering and field production of industrial lipids.

PubMed

Bansal, Sunil; Durrett, Timothy P

2016-01-01

Triacylglycerols (TAG) containing modified fatty acids with functionality beyond those found in commercially grown oil seed crops can be used as feedstocks for biofuels and bio-based materials. Over the years, advances have been made in transgenically engineering the production of various modified fatty acids in the model plant Arabidopsis thaliana. However, the inability to produce large quantities of transgenic seed has limited the functional testing of the modified oil. In contrast, the emerging oil seed crop Camelina sativa possesses important agronomic traits that recommend it as an ideal production platform for biofuels and industrial feedstocks. Camelina possesses low water and fertilizer requirements and is capable of yields comparable to other oil seed crops, particularly under stress conditions. Importantly, its relatively short growing season enables it to be grown as part of a double cropping system. In addition to these valuable agronomic features, Camelina is amenable to rapid metabolic engineering. The development of a simple and effective transformation method, combined with the availability of abundant transcriptomic and genomic data, has allowed the generation of transgenic Camelina lines capable of synthesizing high levels of unusual lipids. In some cases these levels have surpassed what was achieved in Arabidopsis. Further, the ability to use Camelina as a crop production system has allowed for the large scale growth of transgenic oil seed crops, enabling subsequent physical property testing. The application of new techniques such as genome editing will further increase the suitability of Camelina as an ideal platform for the production of biofuels and bio-materials. Copyright © 2015 Elsevier B.V. and Société Française de Biochimie et Biologie Moléculaire (SFBBM). All rights reserved.

Seed priming with iron and zinc in bread wheat: effects in germination, mitosis and grain yield.

PubMed

Reis, Sara; Pavia, Ivo; Carvalho, Ana; Moutinho-Pereira, José; Correia, Carlos; Lima-Brito, José

2018-07-01

Currently, the biofortification of crops like wheat with micronutrients such as iron (Fe) and zinc (Zn) is extremely important due to the deficiencies of these micronutrients in the human diet and in soils. Agronomic biofortification with Fe and Zn can be done through different exogenous strategies such as soil application, foliar spraying, and seed priming. However, the excess of these micronutrients can be detrimental to the plants. Therefore, in the last decade, a high number of studies focused on the evaluation of their phytotoxic effects to define the best strategies for biofortification of bread wheat. In this study, we investigated the effects of seed priming with different dosages (1 mg L -1 to 8 mg L -1 ) of Fe and/or Zn in germination, mitosis and yield of bread wheat cv. 'Jordão' when compared with control. Overall, our results showed that: micronutrient dosages higher than 4 mg L -1 negatively affect the germination; Fe and/or Zn concentrations higher than 2 mg L -1 significantly decrease the mitotic index and increase the percentage of dividing cells with anomalies; treatments performed with 8 mg L -1 of Fe and/or 8 mg L -1 Zn caused negative effects in germination, mitosis and grain yield. Moreover, seed priming with 2 mg L -1 Fe + 2 mg L -1 Zn has been shown to be non-cytotoxic, ensuring a high rate of germination (80%) and normal dividing cells (90%) as well as improving tillering and grain yield. This work revealed that seed priming with Fe and Zn micronutrients constitutes a useful and alternative approach for the agronomic biofortification of bread wheat.

Advances and Challenges in Genomic Selection for Disease Resistance.

PubMed

Poland, Jesse; Rutkoski, Jessica

2016-08-04

Breeding for disease resistance is a central focus of plant breeding programs, as any successful variety must have the complete package of high yield, disease resistance, agronomic performance, and end-use quality. With the need to accelerate the development of improved varieties, genomics-assisted breeding is becoming an important tool in breeding programs. With marker-assisted selection, there has been success in breeding for disease resistance; however, much of this work and research has focused on identifying, mapping, and selecting for major resistance genes that tend to be highly effective but vulnerable to breakdown with rapid changes in pathogen races. In contrast, breeding for minor-gene quantitative resistance tends to produce more durable varieties but is a more challenging breeding objective. As the genetic architecture of resistance shifts from single major R genes to a diffused architecture of many minor genes, the best approach for molecular breeding will shift from marker-assisted selection to genomic selection. Genomics-assisted breeding for quantitative resistance will therefore necessitate whole-genome prediction models and selection methodology as implemented for classical complex traits such as yield. Here, we examine multiple case studies testing whole-genome prediction models and genomic selection for disease resistance. In general, whole-genome models for disease resistance can produce prediction accuracy suitable for application in breeding. These models also largely outperform multiple linear regression as would be applied in marker-assisted selection. With the implementation of genomic selection for yield and other agronomic traits, whole-genome marker profiles will be available for the entire set of breeding lines, enabling genomic selection for disease at no additional direct cost. In this context, the scope of implementing genomics selection for disease resistance, and specifically for quantitative resistance and quarantined pathogens, becomes a tractable and powerful approach in breeding programs.

Agronomic benefits of biochar as a soil amendment after its use as waste water filtration medium.

PubMed

Werner, Steffen; Kätzl, Korbinian; Wichern, Marc; Buerkert, Andreas; Steiner, Christoph; Marschner, Bernd

2018-02-01

In many water-scarce countries, waste water is used for irrigation which poses a health risk to farmers and consumers. At the same time, it delivers nutrients to the farming systems. In this study, we tested the hypotheses that biochar can be used as a filter medium for waste water treatment to reduce pathogen loads. At the same time, the biochar is becoming enriched with nutrients and therefore can act as a fertilizer for soil amendment. We used biochar as a filter medium for the filtration of raw waste water and compared the agronomic effects of this "filterchar" (FC) and the untreated biochar (BC) in a greenhouse pot trial on spring wheat biomass production on an acidic sandy soil from Niger. The biochar filter showed the same removal of pathogens as a common sand filter (1.4 log units on average). We did not observe a nutrient accumulation in FC compared to untreated BC. Instead, P, Mg and K were reduced during filtration while N content remained unchanged. Nevertheless, higher biomass (Triticum L. Spp.) production in BC (+72%) and FC (+37%) treatments (20 t ha -1 ), compared with the unamended control, were found. There were no significant differences in aboveground biomass production between BC and FC. Soil available P content was increased by BC (+106%) and FC (+52%) application. Besides, mineral nitrogen content was reduced in BC treated soil and to a lesser extent when FC was used. This may be explained by reduced sorption affinity for mineral nitrogen compounds on FC surfaces. Although the nutrients provided by FC decreased, due to leaching in the filter, it still yielded higher biomass than the unamended control. Copyright © 2017 Elsevier Ltd. All rights reserved.

Effect of cover crops on greenhouse gas emissions in an irrigated field under integrated soil fertility management

NASA Astrophysics Data System (ADS)

Guardia, Guillermo; Abalos, Diego; García-Marco, Sonia; Quemada, Miguel; Alonso-Ayuso, María; Cárdenas, Laura M.; Dixon, Elizabeth R.; Vallejo, Antonio

2016-09-01

Agronomical and environmental benefits are associated with replacing winter fallow by cover crops (CCs). Yet, the effect of this practice on nitrous oxide (N2O) emissions remains poorly understood. In this context, a field experiment was carried out under Mediterranean conditions to evaluate the effect of replacing the traditional winter fallow (F) by vetch (Vicia sativa L.; V) or barley (Hordeum vulgare L.; B) on greenhouse gas (GHG) emissions during the intercrop and the maize (Zea mays L.) cropping period. The maize was fertilized following integrated soil fertility management (ISFM) criteria. Maize nitrogen (N) uptake, soil mineral N concentrations, soil temperature and moisture, dissolved organic carbon (DOC) and GHG fluxes were measured during the experiment. Our management (adjusted N synthetic rates due to ISFM) and pedo-climatic conditions resulted in low cumulative N2O emissions (0.57 to 0.75 kg N2O-N ha-1 yr-1), yield-scaled N2O emissions (3-6 g N2O-N kg aboveground N uptake-1) and N surplus (31 to 56 kg N ha-1) for all treatments. Although CCs increased N2O emissions during the intercrop period compared to F (1.6 and 2.6 times in B and V, respectively), the ISFM resulted in similar cumulative emissions for the CCs and F at the end of the maize cropping period. The higher C : N ratio of the B residue led to a greater proportion of N2O losses from the synthetic fertilizer in these plots when compared to V. No significant differences were observed in CH4 and CO2 fluxes at the end of the experiment. This study shows that the use of both legume and nonlegume CCs combined with ISFM could provide, in addition to the advantages reported in previous studies, an opportunity to maximize agronomic efficiency (lowering synthetic N requirements for the subsequent cash crop) without increasing cumulative or yield-scaled N2O losses.

A potato model intercomparison across varying climates and productivity levels.

PubMed

Fleisher, David H; Condori, Bruno; Quiroz, Roberto; Alva, Ashok; Asseng, Senthold; Barreda, Carolina; Bindi, Marco; Boote, Kenneth J; Ferrise, Roberto; Franke, Angelinus C; Govindakrishnan, Panamanna M; Harahagazwe, Dieudonne; Hoogenboom, Gerrit; Naresh Kumar, Soora; Merante, Paolo; Nendel, Claas; Olesen, Jorgen E; Parker, Phillip S; Raes, Dirk; Raymundo, Rubi; Ruane, Alex C; Stockle, Claudio; Supit, Iwan; Vanuytrecht, Eline; Wolf, Joost; Woli, Prem

2017-03-01

A potato crop multimodel assessment was conducted to quantify variation among models and evaluate responses to climate change. Nine modeling groups simulated agronomic and climatic responses at low-input (Chinoli, Bolivia and Gisozi, Burundi)- and high-input (Jyndevad, Denmark and Washington, United States) management sites. Two calibration stages were explored, partial (P1), where experimental dry matter data were not provided, and full (P2). The median model ensemble response outperformed any single model in terms of replicating observed yield across all locations. Uncertainty in simulated yield decreased from 38% to 20% between P1 and P2. Model uncertainty increased with interannual variability, and predictions for all agronomic variables were significantly different from one model to another (P < 0.001). Uncertainty averaged 15% higher for low- vs. high-input sites, with larger differences observed for evapotranspiration (ET), nitrogen uptake, and water use efficiency as compared to dry matter. A minimum of five partial, or three full, calibrated models was required for an ensemble approach to keep variability below that of common field variation. Model variation was not influenced by change in carbon dioxide (C), but increased as much as 41% and 23% for yield and ET, respectively, as temperature (T) or rainfall (W) moved away from historical levels. Increases in T accounted for the highest amount of uncertainty, suggesting that methods and parameters for T sensitivity represent a considerable unknown among models. Using median model ensemble values, yield increased on average 6% per 100-ppm C, declined 4.6% per °C, and declined 2% for every 10% decrease in rainfall (for nonirrigated sites). Differences in predictions due to model representation of light utilization were significant (P < 0.01). These are the first reported results quantifying uncertainty for tuber/root crops and suggest modeling assessments of climate change impact on potato may be improved using an ensemble approach. © 2016 John Wiley & Sons Ltd.

Relevant role of dissolved humic matter in phosphorus bioavailability in natural and agronomical ecosystems through the formation of Humic-(Metal)-Phosphate complexes

NASA Astrophysics Data System (ADS)

Baigorri, Roberto; Urrutia, Óscar; Erro, Javier; Pazos-Pérez, Nicolás; María García-Mina, José

2016-04-01

Natural Organic Matter (NOM) and the NOM fraction present in soil solution (dissolved organic matter: DOM) are currently considered as fundamental actors in soil fertility and crop mineral nutrition. Indeed, decreases in crop yields as well as soil erosion are closely related to low values of NOM and, in fact, the use of organic amendments as both soil improvers and plant growth enhancers is very usual in countries with soils poor in NOM. This role of NOM (and DOM) seems to be associated with the presence of bio-transformed organic molecules (humic substances) with high cation chelating-complexing ability. In fact, bioavailable micronutrients with metallic character in soil solutions of alkaline and calcareous soils are forming stable complexes with DOM. This beneficial action of DOM also concerns other plant nutrients such as inorganic phosphate (Pi). Among the different mechanisms involved in the beneficial action of DOM on P bioavailability, the possible formation of poly-nuclear complexes including stable chemical bonds between negative binding sites in humic substances and Pi through metal bridges in soil solution might be relevant, especially in acidic soils. In fact, several studies have proven that these complexes can be obtained in the laboratory and are very efficient in prevent Pi soil fixation and improve Pi root uptake. However, clear experimental evidence about their presence in soil solutions of natural and agronomical soil ecosystems has not published yet. We present here experimental results supporting the real presence of stable Pi-metal-Humic (PMH) complexes in the soil solution of several acidic soils. The study is based on the physico-chemical characterization (31P-NMR, FTIR, TEM-EDAX, ICP-OES) of the DOM fraction isolated by ultrafiltration from the soil solution of several representative acidic soils. In average, more than 60 % of Pi was found in the soil solution humic fraction forming stable humic-metal (Fe, Al) complexes.

Molecular Breeding of Rice Restorer Lines and Hybrids for Brown Planthopper (BPH) Resistance Using the Bph14 and Bph15 Genes.

PubMed

Wang, Hongbo; Ye, Shengtuo; Mou, Tongmin

2016-12-01

The development of hybrid rice is a practical approach for increasing rice production. However, the brown planthopper (BPH), Nilaparvata lugens Stål, causes severe yield loss of rice (Oryza sativa L.) and can threaten food security. Therefore, breeding hybrid rice resistant to BPH is the most effective and economical strategy to maintain high and stable production. Fortunately, numerous BPH resistance genes have been identified, and abundant linkage markers are available for molecular marker-assisted selection (MAS) in breeding programs. Hence, we pyramided two BPH resistance genes, Bph14 and Bph15, into a susceptive CMS restorer line Huahui938 and its derived hybrids using MAS to improve the BPH resistance of hybrid rice. Three near-isogenic lines (NILs) with pyramided Bph14 and Bph15 were obtained by molecular marker-assisted backcross (MAB) and phenotypic selection. The genomic components of these NILs were detected using the whole-genome SNP (Single nucleotide polymorphism) array, RICE6K, suggesting that the recurrent parent genome (RPG) recovery of the NILs was 87.88, 87.70 and 86.62 %, respectively. BPH bioassays showed that the improved NILs and their derived hybrids carrying homozygous Bph14 and Bph15 were resistant to BPH. However, the hybrids with heterozygous Bph14 and Bph15 remained susceptible to BPH. The developed NILs showed no significant differences in major agronomic traits and rice qualities compared with the recurrent parent. Moreover, the improved hybrids derived from the NILs exhibited better agronomic performance and rice quality compared with the controls under natural field conditions. This study demonstrates that it is essential to stack Bph14 and Bph15 into both the maternal and paternal parents for developing BPH-resistant hybrid rice varieties. The SNP array with abundant DNA markers is an efficient tool for analyzing the RPG recovery of progenies and can be used to monitor the donor segments in NILs, thus being extremely important for rice molecular breeding.

Seeds of Brassicaceae weeds have an inherent or inducible response to the germination stimulant karrikinolide.

PubMed

Long, Rowena L; Stevens, Jason C; Griffiths, Erin M; Adamek, Markus; Gorecki, Marta J; Powles, Stephen B; Merritt, David J

2011-10-01

Karrikinolide (KAR(1)) is a smoke-derived chemical that can trigger seeds to germinate. A potential application for KAR(1) is for synchronizing the germination of weed seeds, thereby enhancing the efficiency of weed control efforts. Yet not all species germinate readily with KAR(1), and it is not known whether seemingly non-responsive species can be induced to respond. Here a major agronomic weed family, the Brassicaceae, is used to test the hypothesis that a stimulatory response to KAR(1) may be present in physiologically dormant seeds but may not be expressed under all circumstances. Seeds of eight Brassicaceae weed species (Brassica tournefortii, Raphanus raphanistrum, Sisymbrium orientale, S. erysimoides, Rapistrum rugosum, Lepidium africanum, Heliophila pusilla and Carrichtera annua) were tested for their response to 1 µm KAR(1) when freshly collected and following simulated and natural dormancy alleviation, which included wet-dry cycling, dry after-ripening, cold and warm stratification and a 2 year seed burial trial. Seven of the eight Brassicaceae species tested were stimulated to germinate with KAR(1) when the seeds were fresh, and the remaining species became responsive to KAR(1) following wet-dry cycling and dry after-ripening. Light influenced the germination response of seeds to KAR(1), with the majority of species germinating better in darkness. Germination with and without KAR(1) fluctuated seasonally throughout the seed burial trial. KAR(1) responses are more complex than simply stating whether a species is responsive or non-responsive; light and temperature conditions, dormancy state and seed lot all influence the sensitivity of seeds to KAR(1), and a response to KAR(1) can be induced. Three response types for generalizing KAR(1) responses are proposed, namely inherent, inducible and undetected. Given that responses to KAR(1) were either inherent or inducible in all 15 seed lots included in this study, the Brassicaceae may be an ideal target for future application of KAR(1) in weed management.

Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius).

PubMed

Yang, Huaan; Jian, Jianbo; Li, Xuan; Renshaw, Daniel; Clements, Jonathan; Sweetingham, Mark W; Tan, Cong; Li, Chengdao

2015-09-02

Molecular marker-assisted breeding provides an efficient tool to develop improved crop varieties. A major challenge for the broad application of markers in marker-assisted selection is that the marker phenotypes must match plant phenotypes in a wide range of breeding germplasm. In this study, we used the legume crop species Lupinus angustifolius (lupin) to demonstrate the utility of whole genome sequencing and re-sequencing on the development of diagnostic markers for molecular plant breeding. Nine lupin cultivars released in Australia from 1973 to 2007 were subjected to whole genome re-sequencing. The re-sequencing data together with the reference genome sequence data were used in marker development, which revealed 180,596 to 795,735 SNP markers from pairwise comparisons among the cultivars. A total of 207,887 markers were anchored on the lupin genetic linkage map. Marker mining obtained an average of 387 SNP markers and 87 InDel markers for each of the 24 genome sequence assembly scaffolds bearing markers linked to 11 genes of agronomic interest. Using the R gene PhtjR conferring resistance to phomopsis stem blight disease as a test case, we discovered 17 candidate diagnostic markers by genotyping and selecting markers on a genetic linkage map. A further 243 candidate diagnostic markers were discovered by marker mining on a scaffold bearing non-diagnostic markers linked to the PhtjR gene. Nine out from the ten tested candidate diagnostic markers were confirmed as truly diagnostic on a broad range of commercial cultivars. Markers developed using these strategies meet the requirements for broad application in molecular plant breeding. We demonstrated that low-cost genome sequencing and re-sequencing data were sufficient and very effective in the development of diagnostic markers for marker-assisted selection. The strategies used in this study may be applied to any trait or plant species. Whole genome sequencing and re-sequencing provides a powerful tool to overcome current limitations in molecular plant breeding, which will enable plant breeders to precisely pyramid favourable genes to develop super crop varieties to meet future food demands.

Canadian Whole-Farm Model Holos - Development, Stakeholder Involvement, and Model Application

NASA Astrophysics Data System (ADS)

Kroebel, R.; Janzen, H.; Beauchemin, K. A.

2017-12-01

Agriculture and Agri-Food Canada's Holos model, based mostly on emission factors, aims to explore the effect of management on Canadian whole-farm greenhouse gas emissions. The model includes 27 commonly grown annual and perennial crops, summer fallow, grassland, and 8 types of tree plantings, along with beef, dairy, sheep, swine and other livestock or poultry operations. Model outputs encompass net emissions of CO2, CH4, and N2O (in CO2 equivalents), calculated for various farm components. Where possible, algorithms are drawn from peer-reviewed publications. For consistency, Holos is aligned with the Canadian sustainability indicator and national greenhouse gas inventory objectives. Although primarily an exploratory tool for research, the model's design makes it accessible and instructive also to agricultural producers, educators, and policy makers. Model development, therefore, proceeds iteratively, with extensive stakeholder feedback from training sessions or annual workshops. To make the model accessible to diverse users, the team developed a multi-layered interface, with general farming scenarios for general use, but giving access to detailed coefficients and assumptions to researchers. The model relies on extensive climate, soil, and agronomic databases to populate regionally-applicable default values thereby minimizing keyboard entries. In an initial application, the model was used to assess greenhouse gas emissions from the Canadian beef production system; it showed that enteric methane accounted for 63% of total GHG emissions and that 84% of emissions originated from the cow-calf herd. The model further showed that GHG emission intensity per kg beef, nationally, declined by 14% from 1981 to 2011, owing to gains in production efficiency. Holos is now being used to consider further potential advances through improved rations or other management options. We are now aiming to expand into questions of grazing management, and are developing a novel carbon modelling approach based on the ICBM model. Also under development are sub-models to predict ammonia volatilization and water budgets. Development of Holos is expected to continue, forging an interactive link between ongoing research and the interests of stakeholders in an ever-changing agricultural environment.

Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea

PubMed Central

Kujur, Alice; Bajaj, Deepak; Upadhyaya, Hari D.; Das, Shouvik; Ranjan, Rajeev; Shree, Tanima; Saxena, Maneesha S.; Badoni, Saurabh; Kumar, Vinod; Tripathi, Shailesh; Gowda, C. L. L.; Sharma, Shivali; Singh, Sube; Tyagi, Akhilesh K.; Parida, Swarup K.

2015-01-01

The genome-wide discovery and high-throughput genotyping of SNPs in chickpea natural germplasm lines is indispensable to extrapolate their natural allelic diversity, domestication, and linkage disequilibrium (LD) patterns leading to the genetic enhancement of this vital legume crop. We discovered 44,844 high-quality SNPs by sequencing of 93 diverse cultivated desi, kabuli, and wild chickpea accessions using reference genome- and de novo-based GBS (genotyping-by-sequencing) assays that were physically mapped across eight chromosomes of desi and kabuli. Of these, 22,542 SNPs were structurally annotated in different coding and non-coding sequence components of genes. Genes with 3296 non-synonymous and 269 regulatory SNPs could functionally differentiate accessions based on their contrasting agronomic traits. A high experimental validation success rate (92%) and reproducibility (100%) along with strong sensitivity (93–96%) and specificity (99%) of GBS-based SNPs was observed. This infers the robustness of GBS as a high-throughput assay for rapid large-scale mining and genotyping of genome-wide SNPs in chickpea with sub-optimal use of resources. With 23,798 genome-wide SNPs, a relatively high intra-specific polymorphic potential (49.5%) and broader molecular diversity (13–89%)/functional allelic diversity (18–77%) was apparent among 93 chickpea accessions, suggesting their tremendous applicability in rapid selection of desirable diverse accessions/inter-specific hybrids in chickpea crossbred varietal improvement program. The genome-wide SNPs revealed complex admixed domestication pattern, extensive LD estimates (0.54–0.68) and extended LD decay (400–500 kb) in a structured population inclusive of 93 accessions. These findings reflect the utility of our identified SNPs for subsequent genome-wide association study (GWAS) and selective sweep-based domestication trait dissection analysis to identify potential genomic loci (gene-associated targets) specifically regulating important complex quantitative agronomic traits in chickpea. The numerous informative genome-wide SNPs, natural allelic diversity-led domestication pattern, and LD-based information generated in our study have got multidimensional applicability with respect to chickpea genomics-assisted breeding. PMID:25873920

Development of "Purple Endosperm Rice" by Engineering Anthocyanin Biosynthesis in the Endosperm with a High-Efficiency Transgene Stacking System.

PubMed

Zhu, Qinlong; Yu, Suize; Zeng, Dongchang; Liu, Hongmei; Wang, Huicong; Yang, Zhongfang; Xie, Xianrong; Shen, Rongxin; Tan, Jiantao; Li, Heying; Zhao, Xiucai; Zhang, Qunyu; Chen, Yuanling; Guo, Jingxing; Chen, Letian; Liu, Yao-Guang

2017-07-05

Anthocyanins have high antioxidant activities, and engineering of anthocyanin biosynthesis in staple crops, such as rice (Oryza sativa L.), could provide health-promoting foods for improving human health. However, engineering metabolic pathways for biofortification remains difficult, and previous attempts to engineer anthocyanin production in rice endosperm failed because of the sophisticated genetic regulatory network of its biosynthetic pathway. In this study, we developed a high-efficiency vector system for transgene stacking and used it to engineer anthocyanin biosynthesis in rice endosperm. We made a construct containing eight anthocyanin-related genes (two regulatory genes from maize and six structural genes from Coleus) driven by the endosperm-specific promoters,plus a selectable marker and a gene for marker excision. Transformation of rice with this construct generated a novel biofortified germplasm "Purple Endosperm Rice" (called "Zijingmi" in Chinese), which has high anthocyanin contents and antioxidant activity in the endosperm. This anthocyanin production results from expression of the transgenes and the resulting activation (or enhancement) of expression of 13 endogenous anthocyanin biosynthesis genes that are silenced or expressed at low levels in wild-type rice endosperm. This study provides an efficient, versatile toolkit for transgene stacking and demonstrates its use for successful engineering of a sophisticated biological pathway, suggesting the potential utility of this toolkit for synthetic biology and improvement of agronomic traits in plants. Copyright © 2017 The Author. Published by Elsevier Inc. All rights reserved.

7 CFR 1412.48 - Planting Transferability Pilot Project.

Code of Federal Regulations, 2010 CFR

2010-01-01

... the offers exceed the acreage limitation in the State, CCC will conduct a lottery style selection... a program of crop rotation on the farm to achieve agronomic and pest and disease management benefits...

Argentina spectral-agronomic multitemporal data set

NASA Technical Reports Server (NTRS)

Helmer, D.; Kinzler, C.; Tomppkins, M. A.; Badhwar, G. D.

1983-01-01

A multitemporal LANDSAT spectral data set was created. The data set is over five 5 nm-by-6 nm areas over Argentina and contains by field, the spectral data, vegetation type and cloud cover information.

The CRISPR-Cas9 technology: Closer to the ultimate toolkit for targeted genome editing.

PubMed

Quétier, Francis

2016-01-01

The first period of plant genome editing was based on Agrobacterium; chemical mutagenesis by EMS (ethyl methanesulfonate) and ionizing radiations; each of these technologies led to randomly distributed genome modifications. The second period is associated with the discoveries of homing and meganuclease enzymes during the 80s and 90s, which were then engineered to provide efficient tools for targeted editing. From 2006 to 2012, a few crop plants were successfully and precisely modified using zinc-finger nucleases. A third wave of improvement in genome editing, which led to a dramatic decrease in off-target events, was achieved in 2009-2011 with the TALEN technology. The latest revolution surfaced in 2013 with the CRISPR-Cas9 system, whose high efficiency and technical ease of use is really impressive; scientists can use in-house kits or commercially available kits; the only two requirements are to carefully choose the location of the DNA double strand breaks to be induced and then to order an oligonucleotide. While this close-to- ultimate toolkit for targeted editing of genomes represents dramatic scientific progress which allows the development of more complex useful agronomic traits through synthetic biology, the social acceptance of genome editing remains regularly questioned by anti-GMO citizens and organizations. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

The use of whole food animal studies in the safety assessment of genetically modified crops: limitations and recommendations.

PubMed

Bartholomaeus, Andrew; Parrott, Wayne; Bondy, Genevieve; Walker, Kate

2013-11-01

There is disagreement internationally across major regulatory jurisdictions on the relevance and utility of whole food (WF) toxicity studies on GM crops, with no harmonization of data or regulatory requirements. The scientific value, and therefore animal ethics, of WF studies on GM crops is a matter addressable from the wealth of data available on commercialized GM crops and WF studies on irradiated foods. We reviewed available GM crop WF studies and considered the extent to which they add to the information from agronomic and compositional analyses. No WF toxicity study was identified that convincingly demonstrated toxicological concern or that called into question the adequacy, sufficiency, and reliability of safety assessments based on crop molecular characterization, transgene source, agronomic characteristics, and/or compositional analysis of the GM crop and its near-isogenic line. Predictions of safety based on crop genetics and compositional analyses have provided complete concordance with the results of well-conducted animal testing. However, this concordance is primarily due to the improbability of de novo generation of toxic substances in crop plants using genetic engineering practices and due to the weakness of WF toxicity studies in general. Thus, based on the comparative robustness and reliability of compositional and agronomic considerations and on the absence of any scientific basis for a significant potential for de novo generation of toxicologically significant compositional alterations as a sole result of transgene insertion, the conclusion of this review is that WF animal toxicity studies are unnecessary and scientifically unjustifiable.

Characterization of selenium-enriched wheat by agronomic biofortification.

PubMed

Galinha, Catarina; Sánchez-Martínez, María; Pacheco, Adriano M G; Freitas, Maria do Carmo; Coutinho, José; Maçãs, Benvindo; Almeida, Ana Sofia; Pérez-Corona, María Teresa; Madrid, Yolanda; Wolterbeek, Hubert T

2015-07-01

Agronomic biofortification of staple crops is an effective way to enhance their contents in essential nutrients up the food chain, with a view to correcting for their deficiencies in animal or human status. Selenium (Se) is one such case, for its uneven distribution in the continental crust and, therefore, in agricultural lands easily translates into substantial variation in nutritional intakes. Cereals are far from being the main sources of Se on a content basis, but they are likely the major contributors to intake on a dietary basis. To assess their potential to assimilate and biotransform Se, bread and durum wheat were enriched with Se through foliar and soil addition at an equivalent field rate of 100 g of Se per hectare (ha), using sodium selenate and sodium selenite as Se-supplementation matrices, in actual field conditions throughout. Biotransformation of inorganic Se was evaluated by using HPLC-ICP-MS after enzymatic hydrolysis for Se-species extraction in the resulting mature wheat grains. Selenomethionine and Se(VI) were identified and quantified: the former was the predominant species, representing 70-100 % of the total Se in samples; the maximum amount of inorganic Se was below 5 %. These results were similar for both supplementation methods and for both wheat varieties. Judging from the present results, one can conclude that agronomic biofortification of wheat may improve the nutritional quality of wheat grains with significant amounts of selenomethionine, which is an attractive option for increasing the Se status in human diets through Se-enriched, wheat-based foodstuff.

Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize.

PubMed

Riedelsheimer, Christian; Lisec, Jan; Czedik-Eysenberg, Angelika; Sulpice, Ronan; Flis, Anna; Grieder, Christoph; Altmann, Thomas; Stitt, Mark; Willmitzer, Lothar; Melchinger, Albrecht E

2012-06-05

The diversity of metabolites found in plants is by far greater than in most other organisms. Metabolic profiling techniques, which measure many of these compounds simultaneously, enabled investigating the regulation of metabolic networks and proved to be useful for predicting important agronomic traits. However, little is known about the genetic basis of metabolites in crops such as maize. Here, a set of 289 diverse maize inbred lines was genotyped with 56,110 SNPs and assayed for 118 biochemical compounds in the leaves of young plants, as well as for agronomic traits of mature plants in field trials. Metabolite concentrations had on average a repeatability of 0.73 and showed a correlation pattern that largely reflected their functional grouping. Genome-wide association mapping with correction for population structure and cryptic relatedness identified for 26 distinct metabolites strong associations with SNPs, explaining up to 32.0% of the observed genetic variance. On nine chromosomes, we detected 15 distinct SNP-metabolite associations, each of which explained more then 15% of the genetic variance. For lignin precursors, including p-coumaric acid and caffeic acid, we found strong associations (P values to ) with a region on chromosome 9 harboring cinnamoyl-CoA reductase, a key enzyme in monolignol synthesis and a target for improving the quality of lignocellulosic biomass by genetic engineering approaches. Moreover, lignin precursors correlated significantly with lignin content, plant height, and dry matter yield, suggesting that metabolites represent promising connecting links for narrowing the genotype-phenotype gap of complex agronomic traits.

Microsatellite Variations of Elite Setaria Varieties Released during Last Six Decades in China.

PubMed

Jia, Guanqing; Liu, Xiaotong; Schnable, James C; Niu, Zhengang; Wang, Chunfang; Li, Yuhui; Wang, Shujun; Wang, Suying; Liu, Jinrong; Guo, Erhu; Zhi, Hui; Diao, Xianmin

2015-01-01

Crop improvement is a multifaceted micro-evolutionary process, involving changes in breeding approaches, planting configurations and consumption preferences of human beings. Recent research has started to identify the specific genes or genomic regions correlate to improved agronomic traits, however, an apparent blank between the genetic structure of crop elite varieties and their improving histories in diverse modern breeding programs is still in existence. Foxtail millet (Setaria italica) was one of the earliest cereal crops to be domesticated and served as a staple crop for early civilizations in China, where it is still widely grown today. In the present trial, a panel of foxtail millet elite varieties, which were released in the last sixty years in different geographical regions of China, was characterized using microsatellite markers (SSRs). A clear separation of two subpopulations corresponding to the two eco-geographical regions of foxtail millet production in China was identified by the dataset, which also indicated that in more recently released elite varieties, large quantities of accessions have been transferred from spring-sowing to summer-sowing ecotypes, likely as a result of breeding response to planting configurations. An association mapping study was conducted to identify loci controlling traits of major agronomic interest. Furthermore, selective sweeps involved in improvement of foxtail millet were identified as multi-diverse minor effect loci controlling different agronomic traits during the long-term improvement of elite varieties. Our results highlight the effect of transition of planting configuration and breeding preference on genetic evolvement of crop species.

Microsatellite Variations of Elite Setaria Varieties Released during Last Six Decades in China

PubMed Central

Schnable, James C.; Niu, Zhengang; Wang, Chunfang; Li, Yuhui; Wang, Shujun; Wang, Suying; Liu, Jinrong; Guo, Erhu; Zhi, Hui; Diao, Xianmin

2015-01-01

Crop improvement is a multifaceted micro-evolutionary process, involving changes in breeding approaches, planting configurations and consumption preferences of human beings. Recent research has started to identify the specific genes or genomic regions correlate to improved agronomic traits, however, an apparent blank between the genetic structure of crop elite varieties and their improving histories in diverse modern breeding programs is still in existence. Foxtail millet (Setaria italica) was one of the earliest cereal crops to be domesticated and served as a staple crop for early civilizations in China, where it is still widely grown today. In the present trial, a panel of foxtail millet elite varieties, which were released in the last sixty years in different geographical regions of China, was characterized using microsatellite markers (SSRs). A clear separation of two subpopulations corresponding to the two eco-geographical regions of foxtail millet production in China was identified by the dataset, which also indicated that in more recently released elite varieties, large quantities of accessions have been transferred from spring-sowing to summer-sowing ecotypes, likely as a result of breeding response to planting configurations. An association mapping study was conducted to identify loci controlling traits of major agronomic interest. Furthermore, selective sweeps involved in improvement of foxtail millet were identified as multi-diverse minor effect loci controlling different agronomic traits during the long-term improvement of elite varieties. Our results highlight the effect of transition of planting configuration and breeding preference on genetic evolvement of crop species. PMID:25932649

Evaluation of thermophilic fungal consortium for organic municipal solid waste composting.

PubMed

Awasthi, Mukesh Kumar; Pandey, Akhilesh Kumar; Khan, Jamaluddin; Bundela, Pushpendra Singh; Wong, Jonathan W C; Selvam, Ammaiyappan

2014-09-01

Influence of fungal consortium and different turning frequency on composting of organic fraction of municipal solid waste (OFMSW) was investigated to produce compost with higher agronomic value. Four piles of OFMSW were prepared: three piles were inoculated with fungal consortium containing 5l each spore suspensions of Trichoderma viride, Aspergillus niger and Aspergillus flavus and with a turning frequency of weekly (Pile 1), twice a week (Pile 2) and daily (Pile 3), while Pile 4 with weekly turning and without fungal inoculation served as control. The fungal consortium with weekly (Pile 1) turning frequency significantly affected temperature, pH, TOC, TKN, C/N ratio and germination index. High degradation of organic matter and early maturity was observed in Pile 1. Results indicate that fungal consortium with weekly turning frequency of open windrows were more cost-effective in comparison with other technologies for efficient composting and yield safe end products. Copyright © 2014 Elsevier Ltd. All rights reserved.

Construction of a genetic map using EST-SSR markers and QTL analysis of major agronomic characters in hexaploid sweet potato (Ipomoea batatas (L.) Lam).

PubMed

Kim, Jin-Hee; Chung, Il Kyung; Kim, Kyung-Min

2017-01-01

The Sweet potato, Ipomoea batatas (L.) Lam, is difficult to study in genetics and genomics because it is a hexaploid. The sweet potato study not have been performed domestically or internationally. In this study was performed to construct genetic map and quantitative trait loci (QTL) analysis. A total of 245 EST-SSR markers were developed, and the map was constructed by using 210 of those markers. The total map length was 1508.1 cM, and the mean distance between markers was 7.2 cM. Fifteen characteristics were investigated for QTLs analysis. According to those, the Four QTLs were identified, and The LOD score was 3.0. Further studies need to develop molecular markers in terms of EST-SSR markers for doing to be capable of efficient breeding. The genetic map created here using EST-SSR markers will facilitate planned breeding of sweet potato cultivars with various desirable traits.

Impact of use of treated wastewater for irrigation on soil and quinoa crop in South of Morocco

NASA Astrophysics Data System (ADS)

El Youssfi, Lahcen; Choukr-Allah, Redouane; Zaafrani, Mina; Hirich, Aziz; Fahmi, Hasna; Abdelatif, Rami; Laajaj, Khadija; El Omari, Halima

2015-04-01

This work was conducted at the experimental station of the IAV Hassan II-CHA-Agadir in southwest Morocco between 2010 and 2012. It aimed the assessment of the effects of use of treated wastewater on soil properties and agronomic parameters by adopting crop rotation introducing quinoa (Chenopodium quinoa Willd.) as a new crop under semi-arid climate. Biomass production, yield, nutrient accumulation in leaves and the level of electrical conductivity and soil nitrate are the evaluated parameters during three growing seasons. Results show that quinoa has a performing behavior when it is preceded by fabae bean in term of water use efficiency; in addition, the recorded level of salt accumulation in the soil was the lowest in comparison with that of the combinations bean>quinoa and fallow>quinoa. Concerning growth and yield, it was found that growing quinoa after chickpea was more beneficial in terms of biomass productivity and yield. Keywords: Quinoa, soil, treated wastewater semi-arid

Chemometric analysis for the evaluation of phenolic patterns in olive leaves from six cultivars at different growth stages.

PubMed

Talhaoui, Nassima; Gómez-Caravaca, Ana María; Roldán, Cristina; León, Lorenzo; De la Rosa, Raúl; Fernández-Gutiérrez, Alberto; Segura-Carretero, Antonio

2015-02-18

Leaves from six important olive cultivars grown under the same agronomic conditions were collected at four different times from June to December and analyzed by high performance liquid chromatography-diode array detector-time-of-flight-mass spectrometry (HPLC-DAD-TOF-MS). Twenty-eight phenolic compounds were identified and quantified. No qualitative differences were detected among leaves. However, for all cultivars, total concentrations of phenolic compounds decreased from June to August, then increased from October on, and reached higher levels again in December. Principal component analysis provided a clear separation of the phenolic content in leaves for different sampling times and cultivars. Hence, the availability of phenolic compounds depends on both the season and the cultivar. June and December seem to be good times to collect leaves as a source of phenolic compounds. December coincides with the harvest period of olives in the Andalusian region. Thus, in December olive leaves could be valorized efficiently as olive byproducts.

Intercropping for Management of Insect Pests of Castor, Ricinus communis, in the Semi—Arid Tropics of India

PubMed Central

Srinivasa Rao, M.; Venkateswarlu, B.

2012-01-01

Intercropping is one of the important cultural practices in pest management and is based on the principle of reducing insect pests by increasing the diversity of an ecosystem. On—farm experiments were conducted in villages of semi—arid tropical (SAT) India to identify the appropriate combination of castor (Ricinus communis L.) (Malpighiales: Euphorbiaceae) and intercropping in relation to pest incidence. The diversity created by introducing cluster bean, cowpea, black gram, or groundnut as intercrops in castor (1:2 ratio proportions) resulted in reduction of incidence of insect pests, namely semilooper (Achaea janata L.), leaf hopper (Empoasca flavescens Fabricius), and shoot and capsule borer (Conogethes punctiferalis Guenee). A buildup of natural enemies (Microplitis, coccinellids, and spiders) of the major pests of castor was also observed in these intercropping systems and resulted in the reduction of insect pests. Further, these systems were more efficient agronomically and economically, and were thus more profitable than a castor monocrop. PMID:22934569

Automatic aeroponic irrigation system based on Arduino’s platform

NASA Astrophysics Data System (ADS)

Montoya, A. P.; Obando, F. A.; Morales, J. G.; Vargas, G.

2017-06-01

The recirculating hydroponic culture techniques, as aeroponics, has several advantages over traditional agriculture, aimed to improve the efficiently and environmental impact of agriculture. These techniques require continuous monitoring and automation for proper operation. In this work was developed an automatic monitored aeroponic-irrigation system based on the Arduino’s free software platform. Analog and digital sensors for measuring the temperature, flow and level of a nutrient solution in a real greenhouse were implemented. In addition, the pH and electric conductivity of nutritive solutions are monitored using the Arduino’s differential configuration. The sensor network, the acquisition and automation system are managed by two Arduinos modules in master-slave configuration, which communicate one each other wireless by Wi-Fi. Further, data are stored in micro SD memories and the information is loaded on a web page in real time. The developed device brings important agronomic information when is tested with an arugula culture (Eruca sativa Mill). The system also could be employ as an early warning system to prevent irrigation malfunctions.

X-Ray Computed Tomography Reveals the Response of Root System Architecture to Soil Texture1[OPEN

PubMed Central

Rogers, Eric D.; Monaenkova, Daria; Mijar, Medhavinee; Goldman, Daniel I.

2016-01-01

Root system architecture (RSA) impacts plant fitness and crop yield by facilitating efficient nutrient and water uptake from the soil. A better understanding of the effects of soil on RSA could improve crop productivity by matching roots to their soil environment. We used x-ray computed tomography to perform a detailed three-dimensional quantification of changes in rice (Oryza sativa) RSA in response to the physical properties of a granular substrate. We characterized the RSA of eight rice cultivars in five different growth substrates and determined that RSA is the result of interactions between genotype and growth environment. We identified cultivar-specific changes in RSA in response to changing growth substrate texture. The cultivar Azucena exhibited low RSA plasticity in all growth substrates, whereas cultivar Bala root depth was a function of soil hardness. Our imaging techniques provide a framework to study RSA in different growth environments, the results of which can be used to improve root traits with agronomic potential. PMID:27208237

Estimation of Wheat Plant Density at Early Stages Using High Resolution Imagery

PubMed Central

Liu, Shouyang; Baret, Fred; Andrieu, Bruno; Burger, Philippe; Hemmerlé, Matthieu

2017-01-01

Crop density is a key agronomical trait used to manage wheat crops and estimate yield. Visual counting of plants in the field is currently the most common method used. However, it is tedious and time consuming. The main objective of this work is to develop a machine vision based method to automate the density survey of wheat at early stages. RGB images taken with a high resolution RGB camera are classified to identify the green pixels corresponding to the plants. Crop rows are extracted and the connected components (objects) are identified. A neural network is then trained to estimate the number of plants in the objects using the object features. The method was evaluated over three experiments showing contrasted conditions with sowing densities ranging from 100 to 600 seeds⋅m-2. Results demonstrate that the density is accurately estimated with an average relative error of 12%. The pipeline developed here provides an efficient and accurate estimate of wheat plant density at early stages. PMID:28559901

Phytohormones signaling and crosstalk regulating leaf angle in rice.

PubMed

Luo, Xiangyu; Zheng, Jingsheng; Huang, Rongyu; Huang, Yumin; Wang, Houcong; Jiang, Liangrong; Fang, Xuanjun

2016-12-01

Leaf angle is an important agronomic trait in rice (Oryza sativa L.). It affects both the efficiency of sunlight capture and nitrogen reservoirs. The erect leaf phenotype is suited for high-density planting and thus increasing crop yields. Many genes regulate leaf angle by affecting leaf structure, such as the lamina joint, mechanical tissues, and the midrib. Signaling of brassinosteroids (BR), auxin (IAA), and gibberellins (GA) plays important roles in the regulation of lamina joint bending in rice. In addition, the biosynthesis and signaling of BR are known to have dominant effects on leaf angle development. In this review, we summarize the factors and genes associated with the development of leaf angle in rice, outline the regulatory mechanisms based on the signaling of BR, IAA, and GA, and discuss the contribution of crosstalk between BR and IAA or GA in the formation of leaf angle. Promising lines of research in the transgenic engineering of rice leaf angle to increase grain yield are proposed.

Strigolactone biology: genes, functional genomics, epigenetics and applications.

PubMed

Makhzoum, Abdullah; Yousefzadi, Morteza; Malik, Sonia; Gantet, Pascal; Tremouillaux-Guiller, Jocelyne

2017-03-01

Strigolactones (SLs) represent an important new plant hormone class marked by their multifunctional role in plant and rhizosphere interactions. These compounds stimulate hyphal branching in arbuscular mycorrhizal fungi (AMF) and seed germination of root parasitic plants. In addition, they are involved in the control of plant architecture by inhibiting bud outgrowth as well as many other morphological and developmental processes together with other plant hormones such as auxins and cytokinins. The biosynthetic pathway of SLs that are derived from carotenoids was partially decrypted based on the identification of mutants from a variety of plant species. Only a few SL biosynthetic and regulated genes and related regulatory transcription factors have been identified. However, functional genomics and epigenetic studies started to give first elements on the modality of the regulation of SLs related genes. Since they control plant architecture and plant-rhizosphere interaction, SLs start to be used for agronomical and biotechnological applications. Furthermore, the genes involved in the SL biosynthetic pathway and genes regulated by SL constitute interesting targets for plant breeding. Therefore, it is necessary to decipher and better understand the genetic determinants of their regulation at different levels.

Irradiation of municipal sludge for agricultural use

NASA Astrophysics Data System (ADS)

Ahlstrom, Scott B.

Research has demonstrated that irradiation is an effective means for reducing pathogens in sewage sludge to levels where sludge reuse in public areas meets criteria for protection of the public health. Complementary research has demonstrated the value of the irradiated sludge in both agronomic and animal science applications. The benefits of sludge application to cropland are well documented. The irradiation process does not increase the extractability and plant uptake of a broad range of nutrients and heavy metals from sludge-amended soils. However, it does eliminate the hazards associated with pathogen contamination when applying sludge to agricultural land. Irradiated sludge has also been evaluated as a supplemental foodstuff for cattle and sheep. The data indicate that products derived from raw sewage may have a substantial nutritive value for ruminant animals. Irradiation of sewage sludge is a practical means of sludge disinfection. Where a highly disinfected sludge is required, it should be considered as a viable sludge management alternative. Evaluation of sludge irradiation technology and its associated costs must be done with consideration of other sludge treatment processes to develop an acceptable sludge management system.

Perception of the plant hormone ethylene: known-knowns and known-unknowns.

PubMed

Light, Kenneth M; Wisniewski, John A; Vinyard, W Andrew; Kieber-Emmons, Matthew T

2016-09-01

The gaseous phytohormone ethylene is implicated in virtually all phases of plant growth and development and thus has a major impact on crop production. This agronomic impact makes understanding ethylene signaling the Philosopher's Stone of the plant biotechnology world in applications including post-harvest transport of foodstuffs, consistency of foodstuff maturity pre-harvest, decorative flower freshness and longevity, and biomass production for biofuel applications. Ethylene is biosynthesized by plants in response to environmental factors and plant life-cycle events, and triggers a signaling cascade that modulates over 1000 genes. The key components in the perception of ethylene are a family of copper dependent receptors, the bioinorganic chemistry of which has been largely ignored by the chemical community. Since identification of these receptors two decades ago, there has been tremendous growth in knowledge in the biological community on the signal transduction pathways and mechanisms of ethylene signaling. In this review, we highlight these advances and key chemical voids in knowledge that are overdue for exploration, and which are required to ultimately regulate and control ethylene signaling.

The hard choice for alternative biofuels to diesel in Brazil.

PubMed

Carioca, J O B; Hiluy Filho, J J; Leal, M R L V; Macambira, F S

2009-01-01

This paper selects biofuel scenarios to substitute diesel in Brazil based on oil reserves increase, diesel imports, CO(2) emissions, crops agronomic yields, byproducts marketing and social impacts. This hard task still considers that agricultural practices in developing countries have large social impacts. Brazil presents high consumption of diesel oil in transport; low agronomic yield of traditional vegetable oil crops, which demand large cultivation areas contrasting with microalgae and palm oils which present high productivity. Concerning technologies, thermal cracking and transesterification of vegetable oils present a difficult economic situation related to vegetable oils price, food competition and glycerin market; BTL technology, meaning thermal gasification of biomass to liquids, faces problems related to low density of biomaterials and low viscosity of synthetic biodiesel produced. Biorefinery algal integrated systems and co-solvent technology to introduce up to 8% of ethanol into diesel seem to be feasible routes to reduce diesel consumption.

Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits.

PubMed

Varshney, Rajeev K; Saxena, Rachit K; Upadhyaya, Hari D; Khan, Aamir W; Yu, Yue; Kim, Changhoon; Rathore, Abhishek; Kim, Dongseon; Kim, Jihun; An, Shaun; Kumar, Vinay; Anuradha, Ghanta; Yamini, Kalinati Narasimhan; Zhang, Wei; Muniswamy, Sonnappa; Kim, Jong-So; Penmetsa, R Varma; von Wettberg, Eric; Datta, Swapan K

2017-07-01

Pigeonpea (Cajanus cajan), a tropical grain legume with low input requirements, is expected to continue to have an important role in supplying food and nutritional security in developing countries in Asia, Africa and the tropical Americas. From whole-genome resequencing of 292 Cajanus accessions encompassing breeding lines, landraces and wild species, we characterize genome-wide variation. On the basis of a scan for selective sweeps, we find several genomic regions that were likely targets of domestication and breeding. Using genome-wide association analysis, we identify associations between several candidate genes and agronomically important traits. Candidate genes for these traits in pigeonpea have sequence similarity to genes functionally characterized in other plants for flowering time control, seed development and pod dehiscence. Our findings will allow acceleration of genetic gains for key traits to improve yield and sustainability in pigeonpea.

Influence of agronomic variables on the composition of mate tea leaves (Ilex paraguariensis) extracts obtained from CO2 extraction at 30 degrees C and 175 bar.

PubMed

Esmelindro, Angela Aquino; Girardi, Jonathan Dos Santos; Mossi, Altemir; Jacques, Rosângela Assis; Dariva, Cláudio

2004-04-07

The aim of this work is to assess the influence of light intensity (plants with direct sun exposure and in a controlled light intensity) and age of leaves (6-24 months) on the characteristics of the extracts of mate tea leaves obtained from carbon dioxide at high pressures. Samples of mate were collected in an experiment conducted under agronomic control at Industria e Comercio de Erva-Mate Barão LTDA, Brazil. The content of selected organic compounds of the extracts was evaluated by gas chromatography together with mass spectrometry. Quantitative analysis of caffeine, theobromine, phytol, vitamin E, squalene, and stigmasterol was performed, and the results showed that field variables exert a strong influence on the liquid yield and on the chemical distribution of the extracts.

Breeding erect plant type sweetpotato lines using cross breeding and gamma-ray irradiation.

PubMed

Kuranouchi, Toshikazu; Kumazaki, Tadashi; Kumagai, Toru; Nakatani, Makoto

2016-06-01

Few sweetpotato (Ipomoea batatas Lam.) cultivars with erect plant type are available despite their advantages over spreading type, such as simplicity of cultivation and ability to adapt to limited space. One of the reasons is insufficiency of their agronomic characteristics for table use. So, it is important to overcome these drawbacks of ER-type lines. We attempted to breed new erect plant type sweetpotato lines having good agronomic traits using cross breeding and mutation breeding with gamma-ray irradiation. With cross breeding we successfully developed new erect plant type lines with almost equal levels of yield as compared to 'Beniazuma', one of the leading cultivars in Japan. However, mutation breeding failed to develop any promising lines because we could not obtain distinct erect plant type lines. In the future larger numbers of plants should be used for mutation breeding, and irradiation methods should be improved.

Plant photomorphogenesis and canopy growth

NASA Technical Reports Server (NTRS)

Ballare, Carlos L.; Scopel, Ana L.

1994-01-01

An important motivation for studying photomorphogenesis is to understand the relationships among plant photophysiology in canopies, canopy productivity, and agronomic yield. This understanding is essential to optimize lighting systems used for plant farming in controlled environments (CE) and for the design of genetically engineered crop strains with altered photoresponses. This article provides an overview of some basic principles of plant photomorphogenesis in canopies and discusses their implications for (1) scaling up information on plant photophysiology from individual plants in CE to whole canopies in the field, and (2) designing lighting conditions to increase plant productivity in CE used for agronomic purposes (e.g. space farming in CE Life Support Systems). We concentrate on the visible (lambda between 400 and 700 nm) and far-infrared (FR; lambda greater than 700 nm) spectral regions, since the ultraviolet (UV; 280 to 400 nm) is covered by other authors in this volume.

Agronomic and remedial benefits and risks of applying biochar to soil: Current knowledge and future research directions.

PubMed

Kuppusamy, Saranya; Thavamani, Palanisami; Megharaj, Mallavarapu; Venkateswarlu, Kadiyala; Naidu, Ravi

2016-02-01

'Biochar' represents an emerging technology that is increasingly being recognized for its potential role in carbon sequestration, reducing greenhouse gas emissions, waste management, renewable energy, soil improvement, crop productivity enhancement and environmental remediation. Published reviews have so far focused mainly on the above listed agronomic and environmental benefits of applying biochar, yet paid little or no attention to its harmful effects on the ecological system. This review highlights a balanced overview of the advantages and disadvantages of the pyrolysis process of biochar production, end-product quality and the benefits versus drawbacks of biochar on: (a) soil geochemistry and albedo, (b) microflora and fauna, (c) agrochemicals, (d) greenhouse gas efflux, (e) nutrients, (f) crop yield, and (g) contaminants (organic and inorganic). Future research should focus more on the unintended long-term consequences of biochar on biological organisms and their processes in the soil. Copyright © 2015 Elsevier Ltd. All rights reserved.

Correlation and path analysis of biomass sorghum production.

PubMed

Vendruscolo, T P S; Barelli, M A A; Castrillon, M A S; da Silva, R S; de Oliveira, F T; Corrêa, C L; Zago, B W; Tardin, F D

2016-12-23

Sorghum biomass is an interesting raw material for bioenergy production due to its versatility, potential of being a renewable energy source, and low-cost of production. The objective of this study was to evaluate the genetic variability of biomass sorghum genotypes and to estimate genotypic, phenotypic, and environmental correlations, and direct and indirect effects of seven agronomic traits through path analysis. Thirty-four biomass sorghum genotypes and two forage sorghum genotypes were cultivated in a randomized block design with three replicates. The following morpho-agronomic traits were evaluated: flowering date, stem diameter, number of stems, plant height, number of leaves, green mass production, and dry matter production. There were significant differences at the 1% level for all traits. The highest genotypic correlation was found between the traits green mass production and dry matter production. The path analysis demonstrated that green mass production and number of leaves can assist in the selection of dry matter production.

Evaluation of gravimetric ground truth soil moisture data collected for the agricultural soil moisture experiment, 1978 Colby, Kansas, aircraft mission

NASA Technical Reports Server (NTRS)

Arya, L. M.; Phinney, D. E. (Principal Investigator)

1980-01-01

Soil moisture data acquired to support the development of algorithms for estimating surface soil moisture from remotely sensed backscattering of microwaves from ground surfaces are presented. Aspects of field uniformity and variability of gravimetric soil moisture measurements are discussed. Moisture distribution patterns are illustrated by frequency distributions and contour plots. Standard deviations and coefficients of variation relative to degree of wetness and agronomic features of the fields are examined. Influence of sampling depth on observed moisture content an variability are indicated. For the various sets of measurements, soil moisture values that appear as outliers are flagged. The distribution and legal descriptions of the test fields are included along with examinations of soil types, agronomic features, and sampling plan. Bulk density data for experimental fields are appended, should analyses involving volumetric moisture content be of interest to the users of data in this report.

Genetic parameters and selection of soybean lines based on selection indexes.

PubMed

Teixeira, F G; Hamawaki, O T; Nogueira, A P O; Hamawaki, R L; Jorge, G L; Hamawaki, C L; Machado, B Q V; Santana, A J O

2017-09-21

Defining selection criteria is important to obtain promising genotypes in a breeding program. The objective of this study was to estimate genetic parameters for agronomic traits and to perform soybean line selection using selection indices. The experiment was conducted at an experimental area located at Capim Branco farm, belonging to the Federal University of Uberlândia. A total of 37 soybean genotypes were evaluated in randomized complete block design with three replicates, in which twelve agronomic traits were evaluated. Analysis of variance, the Scott-Knott test at the 1 and 5% level of probability, and selection index analyses were performed. There was genetic variability for all agronomic traits, with medium to high levels of genotype determination coefficient. Twelve lines with a total cycle up to 110 days were observed and grouped with the cultivars MSOY 6101 and UFUS 7910. Three lines, UFUS FG 03, UFUS FG 20, and UFUS FG 31, were highlighted regarding grain yield with higher values than the national average of 3072 kg/ha. The direct selection enabled the highest trait individual gains. The Williams (1962) index and the Smith (1936) and Hazel (1943) index presented the highest selection gain for the grain yield character. The genotype-ideotype distance index and the index of the sum of ranks of Mulamba and Mock (1978) presented higher values of total selection gain. The lines UFUS FG 12, UFUS FG 14, UFUS FG 18, UFUS FG 25, and UFUS FG 31 were distinguished as superior genotypes by direct selection methods and selection indexes.

QTL mapping for Mediterranean corn borer resistance in European flint germplasm using recombinant inbred lines

PubMed Central

2010-01-01

Background Ostrinia nubilalis (ECB) and Sesamia nonagrioides (MCB) are two maize stem borers which cause important losses in temperate maize production, but QTL analyses for corn borer resistance were mostly restricted to ECB resistance and maize materials genetically related (mapping populations derived from B73). Therefore, the objective of this work was to identify and characterize QTLs for MCB resistance and agronomic traits in a RILs population derived from European flint inbreds. Results Three QTLs were detected for stalk tunnel length at bins 1.02, 3.05 and 8.05 which explained 7.5% of the RILs genotypic variance. The QTL at bin 3.05 was co-located to a QTL related to plant height and grain humidity and the QTL at bin 8.05 was located near a QTL related to yield. Conclusions Our results, when compared with results from other authors, suggest the presence of genes involved in cell wall biosynthesis or fortification with effects on resistance to different corn borer species and digestibility for dairy cattle. Particularly, we proposed five candidate genes related to cell wall characteristics which could explain the QTL for stalk tunnelling in the region 3.05. However, the small proportion of genotypic variance explained by the QTLs suggest that there are also many other genes of small effect regulating MCB resistance and we conclude that MAS seems not promising for this trait. Two QTLs detected for stalk tunnelling overlap with QTLs for agronomic traits, indicating the presence of pleitropism or linkage between genes affecting resistance and agronomic traits. PMID:20230603

Preliminary evidence for associations between molecular markers and quantitative traits in a set of bread wheat (Triticum aestivum L.) cultivars and breeding lines.

PubMed

Abdollahi Mandoulakani, Babak; Nasri, Shilan; Dashchi, Sahar; Arzhang, Sorour; Bernousi, Iraj; Abbasi Holasou, Hossein

The identification of polymorphic markers associated with various quantitative traits allows us to test their performance for the exploitation of the extensive quantitative variation maintained in gene banks. In the current study, a set of 97 wheat germplasm accessions including 48 cultivars and 49 breeding lines were evaluated for 18 agronomic traits. The accessions were also genotyped with 23 ISSR, nine IRAP and 20 REMAP markers, generating a total of 658 clear and scorable bands, 86% of which were polymorphic. Both neighbor-joining dendrogram and Bayesian analysis of clustering of individuals revealed that the accessions could be divided into four genetically distinct groups, indicating the presence of a population structure in current wheat germplasm. Associations between molecular markers and 18 agronomic traits were analyzed using the mixed linear model (MLM) approach. A total of 94 loci were found to be significantly associated with agronomic traits (P≤0.01). The highest number of bands significantly associated with the 18 traits varied from 11 for number of spikelets spike -1 (NSS) to two for grain yield in row (GRY). Loci ISSR16-9 and REMAP13-10 were associated with three different traits. The results of the current study provide useful information about the performance of retrotransposon-based and ISSR molecular markers that could be helpful in selecting potentially elite gene bank samples for wheat-breeding programs. Copyright © 2017 Académie des sciences. Published by Elsevier Masson SAS. All rights reserved.

Automatic detection and agronomic characterization of olive groves using high-resolution imagery and LIDAR data

NASA Astrophysics Data System (ADS)

Caruso, T.; Rühl, J.; Sciortino, R.; Marra, F. P.; La Scalia, G.

2014-10-01

The Common Agricultural Policy of the European Union grants subsidies for olive production. Areas of intensified olive farming will be of major importance for the increasing demand for oil production of the next decades, and countries with a high ratio of intensively and super-intensively managed olive groves will be more competitive than others, since they are able to reduce production costs. It can be estimated that about 25-40% of the Sicilian oliviculture must be defined as "marginal". Modern olive cultivation systems, which permit the mechanization of pruning and harvest operations, are limited. Agronomists, landscape planners, policy decision-makers and other professionals have a growing need for accurate and cost-effective information on land use in general and agronomic parameters in the particular. The availability of high spatial resolution imagery has enabled researchers to propose analysis tools on agricultural parcel and tree level. In our study, we test the performance of WorldView-2 imagery relative to the detection of olive groves and the delineation of olive tree crowns, using an object-oriented approach of image classification in combined use with LIDAR data. We selected two sites, which differ in their environmental conditions and in their agronomic parameters of olive grove cultivation. The main advantage of the proposed methodology is the low necessary quantity of data input and its automatibility. However, it should be applied in other study areas to test if the good results of accuracy assessment can be confirmed. Data extracted by the proposed methodology can be used as input data for decision-making support systems for olive grove management.

QTL mapping for nine drought-responsive agronomic traits in bread wheat under irrigated and rain-fed environments

PubMed Central

Gahlaut, Vijay; Jaiswal, Vandana; Tyagi, Bhudeva S.; Singh, Gyanendra; Sareen, Sindhu; Balyan, Harindra S.

2017-01-01

In bread wheat, QTL interval mapping was conducted for nine important drought responsive agronomic traits. For this purpose, a doubled haploid (DH) mapping population derived from Kukri/Excalibur was grown over three years at four separate locations in India, both under irrigated and rain-fed environments. Single locus analysis using composite interval mapping (CIM) allowed detection of 98 QTL, which included 66 QTL for nine individual agronomic traits and 32 QTL, which affected drought sensitivity index (DSI) for the same nine traits. Two-locus analysis allowed detection of 19 main effect QTL (M-QTL) for four traits (days to anthesis, days to maturity, grain filling duration and thousand grain weight) and 19 pairs of epistatic QTL (E-QTL) for two traits (days to anthesis and thousand grain weight). Eight QTL were common in single locus analysis and two locus analysis. These QTL (identified both in single- and two-locus analysis) were distributed on 20 different chromosomes (except 4D). Important genomic regions on chromosomes 5A and 7A were also identified (5A carried QTL for seven traits and 7A carried QTL for six traits). Marker-assisted recurrent selection (MARS) involving pyramiding of important QTL reported in the present study, together with important QTL reported earlier, may be used for improvement of drought tolerance in wheat. In future, more closely linked markers for the QTL reported here may be developed through fine mapping, and the candidate genes may be identified and used for developing a better understanding of the genetic basis of drought tolerance in wheat. PMID:28793327

Validation of mega-environment universal and specific QTL associated with seed yield and agronomic traits in soybeans.

PubMed

Palomeque, Laura; Liu, Li-Jun; Li, Wenbin; Hedges, Bradley R; Cober, Elroy R; Smid, Mathew P; Lukens, Lewis; Rajcan, Istvan

2010-03-01

The value of quantitative trait loci (QTL) is dependent on the strength of association with the traits of interest, allelic diversity at the QTL and the effect of the genetic background on the expression of the QTL. A number of recent studies have identified QTL associated with traits of interest that appear to be independent of the environment but dependent on the genetic background in which they are found. Therefore, the objective of this study was to validate universal and/or mega-environment-specific seed yield QTL that have been previously reported in an independent recombinant inbred line (RIL) population derived from the cross between an elite Chinese and Canadian parent. The population was evaluated at two field environments in China and in five environments in Canada in 2005 and 2006. Of the seven markers linked to seed yield QTL reported by our group in a previous study, four were polymorphic between the two parents. No association between seed yield and QTL was observed. The result could imply that seed yield QTL were either not stable in this particular genetic background or harboured different alleles than the ones in the original mapping population. QTL(U) Satt162 was associated with several agronomic traits of which lodging was validated. Both the non-adapted and adapted parent contributed favourable alleles to the progeny. Therefore, plant introductions have been validated as a source of favourable alleles that could increase the genetic variability of the soybean germplasm pool and lead to further improvements in seed yield and other agronomic traits.

SNP Marker Integration and QTL Analysis of 12 Agronomic and Morphological Traits in F8 RILs of Pepper (Capsicum annuum L.)

PubMed Central

Lu, Fu-Hao; Kwon, Soon-Wook; Yoon, Min-Young; Kim, Ki-Taek; Cho, Myeong-Cheoul; Yoon, Moo-Kyung; Park, Yong-Jin

2012-01-01

Red pepper, Capsicum annuum L., has been attracting geneticists’ and breeders’ attention as one of the important agronomic crops. This study was to integrate 41 SNP markers newly developed from comparative transcriptomes into a previous linkage map, and map 12 agronomic and morphological traits into the integrated map. A total of 39 markers found precise position and were assigned to 13 linkage groups (LGs) as well as the unassigned LGe, leading to total 458 molecular markers present in this genetic map. Linkage mapping was supported by the physical mapping to tomato and potato genomes using BLAST retrieving, revealing at least two-thirds of the markers mapped to the corresponding LGs. A sum of 23 quantitative trait loci from 11 traits was detected using the composite interval mapping algorithm. A consistent interval between a035_1 and a170_1 on LG5 was detected as a main-effect locus among the resistance QTLs to Phytophthora capsici at high-, intermediate- and low-level tests, and interactions between the QTLs for high-level resistance test were found. Considering the epistatic effect, those QTLs could explain up to 98.25% of the phenotype variations of resistance. Moreover, 17 QTLs for another eight traits were found to locate on LG3, 4, and 12 mostly with varying phenotypic contribution. Furthermore, the locus for corolla color was mapped to LG10 as a marker. The integrated map and the QTLs identified would be helpful for current genetics research and crop breeding, especially in the Solanaceae family. PMID:22684870

Evaluation of virus resistance and agronomic performance of rice cultivar ASD 16 after transfer of transgene against Rice tungro bacilliform virus by backcross breeding.

PubMed

Valarmathi, P; Kumar, G; Robin, S; Manonmani, S; Dasgupta, I; Rabindran, R

2016-08-01

Severe losses of rice yield in south and southeast Asia are caused by Rice tungro disease (RTD) induced by mixed infection of Rice tungro bacilliform virus (RTBV) and Rice tungro spherical virus (RTSV). In order to develop transgene-based resistance against RTBV, one of its genes, ORF IV, was used to generate transgenic resistance based on RNA-interference in the easily transformed rice variety Pusa Basmati-1, and the transgene was subsequently introgressed to rice variety ASD 16, a variety popular in southern India, using transgene marker-assisted selection. Here, we report the evaluation of BC3F4 and BC3F5 generation rice plants for resistance to RTBV as well as for agronomic traits under glasshouse conditions. The BC3F4 and BC3F5 generation rice plants tested showed variable levels of resistance, which was manifested by an average of twofold amelioration in height reduction, 1.5-fold decrease in the reduction in chlorophyll content, and 100- to 10,000-fold reduction in the titers of RTBV, but no reduction of RTSV titers, in three backcrossed lines when compared with the ASD 16 parent. Agronomic traits of some of the backcrossed lines recorded substantial improvements when compared with the ASD 16 parental line after inoculation by RTBV and RTSV. This work represents an important step in transferring RTD resistance to a susceptible popular rice variety, hence enhancing its yield in areas threatened by the disease.

Characterization of bean (Phaseolus vulgaris L.) ecotype "Fagiolo occhio nero di Oliveto Citra" using agronomic, biochemical and molecular approaches.

PubMed

Zaccardelli, Massimo; Pentangelo, Alfonso; Tripodi, Pasquale

2013-09-15

Common bean (Phaseolus vulgaris) is the most important grain legume and plays a significant role in human nutrition being a major source of dietary protein and representing a rich source of minerals and certain vitamins. Several large germplasm collections have been established, which contain large amounts of genetic diversity, including wild and domesticated species. In this study agronomic, biochemical and molecular characterization of landrace bean named "Fagiolo occhio nero di Oliveto Citra" (Phaseolus vulgaris L.), is described. Seeds were obtained by local farmers and field trials were carried out during years 2009-2010, in the typical cultivation site (Oliveto Citra, Salerno Province), using two different densities of investment. During 2011, in order to evaluate the performance in different environments, field trials were conducted in three localities (Battipaglia, Oliveto Citra and Controne). Data analysis shows good adaptability across locations and similar grain yield using two spacing's of seeds. Morphological characterization and molecular analysis, using AFLP and Minisatellite molecular markers, were performed on ten "biotypes" collected from local farmers. Seeds characterization showed variability on the violet area surrounding the hilum (named as eye) while markers have provided useful information on relationships between biotypes. Biochemical analysis, which includes the contents of protein, minerals and antioxidants, shows how the composition is consistent with respect to other landraces and commercial cultivars. The landrace under study revealed genetic stability and good adaptation to cultivated environment with best performance in the native area. In addition, the bio-agronomic characteristics are in accord with studies reported in literature.

Genetic Variability, Genotype × Environment Interaction, Correlation, and GGE Biplot Analysis for Grain Iron and Zinc Concentration and Other Agronomic Traits in RIL Population of Sorghum (Sorghum bicolor L. Moench)

PubMed Central

Phuke, Rahul M.; Anuradha, Kotla; Radhika, Kommineni; Jabeen, Farzana; Anuradha, Ghanta; Ramesh, Thatikunta; Hariprasanna, K.; Mehtre, Shivaji P.; Deshpande, Santosh P.; Anil, Gaddameedi; Das, Roma R.; Rathore, Abhishek; Hash, Tom; Reddy, Belum V. S.; Kumar, Are Ashok

2017-01-01

The low grain iron and zinc densities are well documented problems in food crops, affecting crop nutritional quality especially in cereals. Sorghum is a major source of energy and micronutrients for majority of population in Africa and central India. Understanding genetic variation, genotype × environment interaction and association between these traits is critical for development of improved cultivars with high iron and zinc. A total of 336 sorghum RILs (Recombinant Inbred Lines) were evaluated for grain iron and zinc concentration along with other agronomic traits for 2 years at three locations. The results showed that large variability exists in RIL population for both micronutrients (Iron = 10.8 to 76.4 mg kg−1 and Zinc = 10.2 to 58.7 mg kg−1, across environments) and agronomic traits. Genotype × environment interaction for both micronutrients (iron and zinc) was highly significant. GGE biplots comparison for grain iron and zinc showed greater variation across environments. The results also showed that G × E was substantial for grain iron and zinc, hence wider testing needed for taking care of G × E interaction to breed micronutrient rich sorghum lines. Iron and zinc concentration showed high significant positive correlation (across environment = 0.79; p < 0.01) indicating possibility of simultaneous effective selection for both the traits. The RIL population showed good variability and high heritabilities (>0.60, in individual environments) for Fe and Zn and other traits studied indicating its suitability to map QTL for iron and zinc. PMID:28529518

Association Mapping Reveals Genetic Loci Associated with Important Agronomic Traits in Lentinula edodes, Shiitake Mushroom

PubMed Central

Li, Chuang; Gong, Wenbing; Zhang, Lin; Yang, Zhiquan; Nong, Wenyan; Bian, Yinbing; Kwan, Hoi-Shan; Cheung, Man-Kit; Xiao, Yang

2017-01-01

Association mapping is a robust approach for the detection of quantitative trait loci (QTLs). Here, by genotyping 297 genome-wide molecular markers of 89 Lentinula edodes cultivars in China, the genetic diversity, population structure and genetic loci associated with 11 agronomic traits were examined. A total of 873 alleles were detected in the tested strains with a mean of 2.939 alleles per locus, and the Shannon's information index was 0.734. Population structure analysis revealed two robustly differentiated groups among the Chinese L. edodes cultivars (FST = 0.247). Using the mixed linear model, a total of 43 markers were detected to be significantly associated with four traits. The number of markers associated with traits ranged from 9 to 26, and the phenotypic variations explained by each marker varied from 12.07% to 31.32%. Apart from five previously reported markers, the remaining 38 markers were newly reported here. Twenty-one markers were identified as simultaneously linked to two to four traits, and five markers were associated with the same traits in cultivation tests performed in two consecutive years. The 43 traits-associated markers were related to 97 genes, and 24 of them were related to 10 traits-associated markers detected in both years or identified previously, 13 of which had a >2-fold expression change between the mycelium and primordium stages. Our study has provided candidate markers for marker-assisted selection (MAS) and useful clues for understanding the genetic architecture of agronomic traits in the shiitake mushroom. PMID:28261189

The use of whole food animal studies in the safety assessment of genetically modified crops: Limitations and recommendations

PubMed Central

Bartholomaeus, Andrew; Parrott, Wayne; Bondy, Genevieve

2013-01-01

There is disagreement internationally across major regulatory jurisdictions on the relevance and utility of whole food (WF) toxicity studies on GM crops, with no harmonization of data or regulatory requirements. The scientific value, and therefore animal ethics, of WF studies on GM crops is a matter addressable from the wealth of data available on commercialized GM crops and WF studies on irradiated foods. We reviewed available GM crop WF studies and considered the extent to which they add to the information from agronomic and compositional analyses. No WF toxicity study was identified that convincingly demonstrated toxicological concern or that called into question the adequacy, sufficiency, and reliability of safety assessments based on crop molecular characterization, transgene source, agronomic characteristics, and/or compositional analysis of the GM crop and its near-isogenic line. Predictions of safety based on crop genetics and compositional analyses have provided complete concordance with the results of well-conducted animal testing. However, this concordance is primarily due to the improbability of de novo generation of toxic substances in crop plants using genetic engineering practices and due to the weakness of WF toxicity studies in general. Thus, based on the comparative robustness and reliability of compositional and agronomic considerations and on the absence of any scientific basis for a significant potential for de novo generation of toxicologically significant compositional alterations as a sole result of transgene insertion, the conclusion of this review is that WF animal toxicity studies are unnecessary and scientifically unjustifiable. PMID:24164514

Agronomie implications of waterfowl management in Mississippi ricefields

USGS Publications Warehouse

Manley, S.W.; Kaminski, R.M.; Reinecke, K.J.; Gerard, P.D.

2005-01-01

Ricefields are important foraging habitat for waterfowl and other waterbirds in several North American wintering areas, including the Mississippi Alluvial Valley (MAV). Rice growers are likely to adopt management practices that provide habitat for waterfowl if agronomic benefits also occur. Therefore, we conducted a replicated field experiment during autumn through spring 1995-1997 to study effects of postharvest field treatment and winter-water management on agronomic variables including biomass of residual rice straw, cool-season grasses and forbs (i.e., winter weeds), and viability of red rice (Oryza sativa var.). The treatment combination of postharvest disking and flooding until early March reduced straw 68%, from 9,938 kg/ha after harvest to 3,209 kg/ha in spring. Treatment combinations that included flooding until early March were most effective in suppressing winter weeds and decreased their biomass in spring by 83% when compared to the average of other treatment combinations. Effects of treatment combinations on spring viability of red rice differed between winters, but no significant effects were found within winters. Autumn disking followed by flooding until early March reduced rice straw and suppressed winter weeds the most, but with additional costs. To obtain the most agronomic benefits, we recommend that rice growers forgo autumn disking and flood fields until early March, which will provide moderate straw reduction, good weed suppression, and predicted savings of $22.24-62.93/ha (U.S.) ($9.00-25.47/ac). Maintenance of floods on ricefields until early March also benefits waterfowl and other waterbirds by providing foraging habitat throughout winter.

Calcium biofortification of crops

USDA-ARS?s Scientific Manuscript database

More than half of the world's population is deficient in calcium (Ca), iron (Fe), iodine (I), magnesium (Mg), selenium (Se), or zinc (Zn). The consumption of plants, directly or via livestock, containing inadequate concentrations of particular minerals causes these deficiencies. Agronomic and geneti...

Phylogenetic relationships among Maloideae species

USDA-ARS?s Scientific Manuscript database

The Maloideae is a highly diverse sub-family of the Rosaceae containing several agronomically important species (Malus sp. and Pyrus sp.) and their wild relatives. Previous phylogenetic work within the group has revealed extensive intergeneric hybridization and polyploidization. In order to develop...

ESTABLISHMENT OF TRANSGENIC CREEPING BENTGRASS (AGROSTIS STOLONIFERA L.) IN NON-AGRONOMIC HABITATS

EPA Science Inventory

Concerns about genetically modified crops include transgene flow to compatible wild species and potential unintended ecological consequences associated with transgene introgression. To date, there has been little empirical documentation of the relative frequency of establishment...

Measuring sap flow in plants

USDA-ARS?s Scientific Manuscript database

Sap flow measurements provide a powerful tool for quantifying plant water use and monitoring qualitative physiological responses of plants to environmental conditions. As such, sap flow methods are widely employed to invesitgate the agronomic, ecological and hydrological outcomes of plant growth. T...

Biofortification and phytoremediation of selenium in China

USDA-ARS?s Scientific Manuscript database

Biofortification is an agricultural process that increases the uptake and accumulation of specific nutrients, e.g. selenium (Se), in agricultural food products through plant breeding, genetic engineering, and manipulation of agronomic practices. The development and uses of biofortified agricultural ...

Interspecific chromosomal effects on agronomic traits in Gossypium hirsutum by AD analysis using intermated G. barbadense chromosome substitution lines.

PubMed

Saha, S; Wu, J; Jenkins, J N; McCarty, J C; Stelly, D M

2013-01-01

The untapped potential of the beneficial alleles from Gossypium barbadense L. has not been well utilized in G. hirsutum L. (often referred to as Upland cotton) breeding programs. This is primarily due to genomic incompatibility and technical challenges associated with conventional methods of interspecific introgression. In this study, we used a hypoaneuploid-based chromosome substitution line as a means for systematically introgressing G. barbadense doubled-haploid line '3-79' germplasm into a common Upland genetic background, inbred 'Texas marker-1' ('TM-1'). We reported on the chromosomal effects, lint percentage, boll weight, seedcotton yield and lint yield in chromosome substitution CS-B (G. barbadense L.) lines. Using an additive-dominance genetic model, we studied the interaction of alleles located on two alien substituted chromosomes versus one alien substituted chromosome using a partial diallel mating design of selected CS-B lines (CS-B05sh, CS-B06, CS-B09, CS-B10, CS-B12, CS-B17 and CS-B18). Among these parents, CS-B09 and CS-B10 were reported for the first time. The donor parent 3-79, had the lowest additive effect for all of the agronomic traits. All of the CS-B lines had significant additive effects with boll weight and lint percentage. CS-B10 had the highest additive effects for lint percentage, and seedcotton and lint yield among all of the lines showing a transgressive genetic mode of inheritance for these traits. CS-B09 had greater additive genetic effects on lint yield, while CS-B06, CS-B10 and CS-B17 had superior additive genetic effects on both lint and seedcotton yield compared to TM-1 parent. The 3-79 line had the highest dominance effects for boll weight (0.513 g) and CS-B10 had the lowest dominance effect for boll weight (-0.702). Some major antagonistic genetic effects for the agronomic traits were present with most of the substituted chromosomes and chromosome arms, a finding suggested their recalcitrance to conventional breeding efforts. The results revealed that the substituted chromosomes and arms of 3-79 carried some cryptic beneficial alleles with potential to improve agronomic traits including yield, whose effects were masked at the whole genome level in 3-79.

Catchment Area Treatment (CAT) Plan and Crop Area Optimization for Integrated Management in a Water Resource Project

NASA Astrophysics Data System (ADS)

Jaiswal, R. K.; Thomas, T.; Galkate, R. V.; Ghosh, N. C.; Singh, S.

2013-09-01

A scientifically developed catchment area treatment (CAT) plan and optimized pattern of crop areas may be the key for sustainable development of water resource, profitability in agriculture and improvement of overall economy in drought affected Bundelkhand region of Madhya Pradesh (India). In this study, an attempt has been made to develop a CAT plan using spatial variation of geology, geomorphology, soil, drainage, land use in geographical information system for selection of soil and water conservation measures and crop area optimization using linear programming for maximization of return considering water availability, area affinity, fertilizers, social and market constraints in Benisagar reservoir project of Chhatarpur district (M.P.). The scientifically developed CAT plan based on overlaying of spatial information consists of 58 mechanical measure (49 boulder bunds, 1 check dam, 7 cully plug and 1 percolation tank), 2.60 km2 land for agro forestry, 2.08 km2 land for afforestation in Benisagar dam and 67 mechanical measures (45 boulder bunds and 22 gully plugs), 7.79 km2 land for agro forestry, 5.24 km2 land for afforestation in Beniganj weir catchment with various agronomic measures for agriculture areas. The linear programming has been used for optimization of crop areas in Benisagar command for sustainable development considering various scenarios of water availability, efficiencies, affinity and fertilizers availability in the command. Considering present supply condition of water, fertilizers, area affinity and making command self sufficient in most of crops, the net benefit can be increase to Rs. 1.93 crores from 41.70 km2 irrigable area in Benisagar command by optimizing cropping pattern and reducing losses during conveyance and application of water.

Management of irrigation frequency and nitrogen fertilization to mitigate GHG and NO emissions from drip-fertigated crops.

PubMed

Abalos, Diego; Sanchez-Martin, Laura; Garcia-Torres, Lourdes; van Groenigen, Jan Willem; Vallejo, Antonio

2014-08-15

Drip irrigation combined with split application of fertilizer nitrogen (N) dissolved in the irrigation water (i.e. drip fertigation) is commonly considered best management practice for water and nutrient efficiency. As a consequence, its use is becoming widespread. Some of the main factors (water-filled pore space, NH4(+) and NO3(-)) regulating the emissions of greenhouse gases (i.e. N2O, CO2 and CH4) and NO from agroecosystems can easily be manipulated by drip fertigation without yield penalties. In this study, we tested management options to reduce these emissions in a field experiment with a melon (Cucumis melo L.) crop. Treatments included drip irrigation frequency (weekly/daily) and type of N fertilizer (urea/calcium nitrate) applied by fertigation. Crop yield, environmental parameters, soil mineral N concentrations and fluxes of N2O, NO, CH4 and CO2 were measured during 85 days. Fertigation with urea instead of calcium nitrate increased N2O and NO emissions by a factor of 2.4 and 2.9, respectively (P<0.005). Daily irrigation reduced NO emissions by 42% (P<0.005) but increased CO2 emissions by 21% (P<0.05) compared with weekly irrigation. We found no relation between irrigation frequency and N2O emissions. Based on yield-scaled Global Warming Potential as well as NO cumulative emissions, we conclude that weekly fertigation with a NO3(-)-based fertilizer is the best option to combine agronomic productivity with environmental sustainability. Our study shows that adequate management of drip fertigation, while contributing to the attainment of water and food security, may provide an opportunity for climate change mitigation. Copyright © 2014 Elsevier B.V. All rights reserved.

An efficient immunodetection method for histone modifications in plants.

PubMed

Nic-Can, Geovanny; Hernández-Castellano, Sara; Kú-González, Angela; Loyola-Vargas, Víctor M; De-la-Peña, Clelia

2013-12-16

Epigenetic mechanisms can be highly dynamic, but the cross-talk among them and with the genome is still poorly understood. Many of these mechanisms work at different places in the cell and at different times of organism development. Covalent histone modifications are one of the most complex and studied epigenetic mechanisms involved in cellular reprogramming and development in plants. Therefore, the knowledge of the spatial distribution of histone methylation in different tissues is important to understand their behavior on specific cells. Based on the importance of epigenetic marks for biology, we present a simplified, inexpensive and efficient protocol for in situ immunolocalization on different tissues such as flowers, buds, callus, somatic embryo and meristematic tissue from several plants of agronomical and biological importance. Here, we fully describe all the steps to perform the localization of histone modifications. Using this method, we were able to visualize the distribution of H3K4me3 and H3K9me2 without loss of histological integrity of tissues from several plants, including Agave tequilana, Capsicum chinense, Coffea canephora and Cedrela odorata, as well as Arabidopsis thaliana. There are many protocols to study chromatin modifications; however, most of them are expensive, difficult and require sophisticated equipment. Here, we provide an efficient protocol for in situ localization of histone methylation that dispenses with the use of expensive and sensitive enzymes. The present method can be used to investigate the cellular distribution and localization of a wide array of proteins, which could help to clarify the biological role that they play at specific times and places in different tissues of various plant species.

Functional Genomic Analysis of Cotton Genes with Agrobacterium-Mediated Virus-Induced Gene Silencing

PubMed Central

Gao, Xiquan; Shan, Libo

2015-01-01

Cotton (Gossypium spp.) is one of the most agronomically important crops worldwide for its unique textile fiber production and serving as food and feed stock. Molecular breeding and genetic engineering of useful genes into cotton have emerged as advanced approaches to improve cotton yield, fiber quality, and resistance to various stresses. However, the understanding of gene functions and regulations in cotton is largely hindered by the limited molecular and biochemical tools. Here, we describe the method of an Agrobacterium infiltration-based virus-induced gene silencing (VIGS) assay to transiently silence endogenous genes in cotton at 2-week-old seedling stage. The genes of interest could be readily silenced with a consistently high efficiency. To monitor gene silencing efficiency, we have cloned cotton GrCla1 from G. raimondii, a homolog gene of Arabidopsis Cloroplastos alterados 1 (AtCla1) involved in chloroplast development, and inserted into a tobacco rattle virus (TRV) binary vector pYL156. Silencing of GrCla1 results in albino phenotype on the newly emerging leaves, serving as a visual marker for silencing efficiency. To further explore the possibility of using VIGS assay to reveal the essential genes mediating disease resistance to Verticillium dahliae, a fungal pathogen causing severe Verticillium wilt in cotton, we developed a seedling infection assay to inoculate cotton seedlings when the genes of interest are silenced by VIGS. The method we describe here could be further explored for functional genomic analysis of cotton genes involved in development and various biotic and abiotic stresses. PMID:23386302

Functional genomic analysis of cotton genes with agrobacterium-mediated virus-induced gene silencing.

PubMed

Gao, Xiquan; Shan, Libo

2013-01-01

Cotton (Gossypium spp.) is one of the most agronomically important crops worldwide for its unique textile fiber production and serving as food and feed stock. Molecular breeding and genetic engineering of useful genes into cotton have emerged as advanced approaches to improve cotton yield, fiber quality, and resistance to various stresses. However, the understanding of gene functions and regulations in cotton is largely hindered by the limited molecular and biochemical tools. Here, we describe the method of an Agrobacterium infiltration-based virus-induced gene silencing (VIGS) assay to transiently silence endogenous genes in cotton at 2-week-old seedling stage. The genes of interest could be readily silenced with a consistently high efficiency. To monitor gene silencing efficiency, we have cloned cotton GrCla1 from G. raimondii, a homolog gene of Arabidopsis Cloroplastos alterados 1 (AtCla1) involved in chloroplast development, and inserted into a tobacco rattle virus (TRV) binary vector pYL156. Silencing of GrCla1 results in albino phenotype on the newly emerging leaves, serving as a visual marker for silencing efficiency. To further explore the possibility of using VIGS assay to reveal the essential genes mediating disease resistance to Verticillium dahliae, a fungal pathogen causing severe Verticillium wilt in cotton, we developed a seedling infection assay to inoculate cotton seedlings when the genes of interest are silenced by VIGS. The method we describe here could be further explored for functional genomic analysis of cotton genes involved in development and various biotic and abiotic stresses.

Impact of climate change on crop nutrient and water use efficiencies.

PubMed

Brouder, Sylvie M; Volenec, Jeffrey J

2008-08-01

Implicit in discussions of plant nutrition and climate change is the assumption that we know what to do relative to nutrient management here and now but that these strategies might not apply in a changed climate. We review existing knowledge on interactive influences of atmospheric carbon dioxide concentration, temperature and soil moisture on plant growth, development and yield as well as on plant water use efficiency (WUE) and physiological and uptake efficiencies of soil-immobile nutrients. Elevated atmospheric CO(2) will increase leaf and canopy photosynthesis, especially in C3 plants, with minor changes in dark respiration. Additional CO(2) will increase biomass without marked alteration in dry matter partitioning, reduce transpiration of most plants and improve WUE. However, spatiotemporal variation in these attributes will impact agronomic performance and crop water use in a site-specific manner. Nutrient acquisition is closely associated with overall biomass and strongly influenced by root surface area. When climate change alters soil factors to restrict root growth, nutrient stress will occur. Plant size may also change but nutrient concentration will remain relatively unchanged; therefore, nutrient removal will scale with growth. Changes in regional nutrient requirements will be most remarkable where we alter cropping systems to accommodate shifts in ecozones or alter farming systems to capture new uses from existing systems. For regions and systems where we currently do an adequate job managing nutrients, we stand a good chance of continued optimization under a changed climate. If we can and should do better, climate change will not help us.

High Throughput Determination of Plant Height, Ground Cover, and Above-Ground Biomass in Wheat with LiDAR

PubMed Central

Jimenez-Berni, Jose A.; Deery, David M.; Rozas-Larraondo, Pablo; Condon, Anthony (Tony) G.; Rebetzke, Greg J.; James, Richard A.; Bovill, William D.; Furbank, Robert T.; Sirault, Xavier R. R.

2018-01-01

Crop improvement efforts are targeting increased above-ground biomass and radiation-use efficiency as drivers for greater yield. Early ground cover and canopy height contribute to biomass production, but manual measurements of these traits, and in particular above-ground biomass, are slow and labor-intensive, more so when made at multiple developmental stages. These constraints limit the ability to capture these data in a temporal fashion, hampering insights that could be gained from multi-dimensional data. Here we demonstrate the capacity of Light Detection and Ranging (LiDAR), mounted on a lightweight, mobile, ground-based platform, for rapid multi-temporal and non-destructive estimation of canopy height, ground cover and above-ground biomass. Field validation of LiDAR measurements is presented. For canopy height, strong relationships with LiDAR (r2 of 0.99 and root mean square error of 0.017 m) were obtained. Ground cover was estimated from LiDAR using two methodologies: red reflectance image and canopy height. In contrast to NDVI, LiDAR was not affected by saturation at high ground cover, and the comparison of both LiDAR methodologies showed strong association (r2 = 0.92 and slope = 1.02) at ground cover above 0.8. For above-ground biomass, a dedicated field experiment was performed with destructive biomass sampled eight times across different developmental stages. Two methodologies are presented for the estimation of biomass from LiDAR: 3D voxel index (3DVI) and 3D profile index (3DPI). The parameters involved in the calculation of 3DVI and 3DPI were optimized for each sample event from tillering to maturity, as well as generalized for any developmental stage. Individual sample point predictions were strong while predictions across all eight sample events, provided the strongest association with biomass (r2 = 0.93 and r2 = 0.92) for 3DPI and 3DVI, respectively. Given these results, we believe that application of this system will provide new opportunities to deliver improved genotypes and agronomic interventions via more efficient and reliable phenotyping of these important traits in large experiments. PMID:29535749

High Throughput Determination of Plant Height, Ground Cover, and Above-Ground Biomass in Wheat with LiDAR.

PubMed

Jimenez-Berni, Jose A; Deery, David M; Rozas-Larraondo, Pablo; Condon, Anthony Tony G; Rebetzke, Greg J; James, Richard A; Bovill, William D; Furbank, Robert T; Sirault, Xavier R R

2018-01-01

Crop improvement efforts are targeting increased above-ground biomass and radiation-use efficiency as drivers for greater yield. Early ground cover and canopy height contribute to biomass production, but manual measurements of these traits, and in particular above-ground biomass, are slow and labor-intensive, more so when made at multiple developmental stages. These constraints limit the ability to capture these data in a temporal fashion, hampering insights that could be gained from multi-dimensional data. Here we demonstrate the capacity of Light Detection and Ranging (LiDAR), mounted on a lightweight, mobile, ground-based platform, for rapid multi-temporal and non-destructive estimation of canopy height, ground cover and above-ground biomass. Field validation of LiDAR measurements is presented. For canopy height, strong relationships with LiDAR ( r 2 of 0.99 and root mean square error of 0.017 m) were obtained. Ground cover was estimated from LiDAR using two methodologies: red reflectance image and canopy height. In contrast to NDVI, LiDAR was not affected by saturation at high ground cover, and the comparison of both LiDAR methodologies showed strong association ( r 2 = 0.92 and slope = 1.02) at ground cover above 0.8. For above-ground biomass, a dedicated field experiment was performed with destructive biomass sampled eight times across different developmental stages. Two methodologies are presented for the estimation of biomass from LiDAR: 3D voxel index (3DVI) and 3D profile index (3DPI). The parameters involved in the calculation of 3DVI and 3DPI were optimized for each sample event from tillering to maturity, as well as generalized for any developmental stage. Individual sample point predictions were strong while predictions across all eight sample events, provided the strongest association with biomass ( r 2 = 0.93 and r 2 = 0.92) for 3DPI and 3DVI, respectively. Given these results, we believe that application of this system will provide new opportunities to deliver improved genotypes and agronomic interventions via more efficient and reliable phenotyping of these important traits in large experiments.

Short-term effects of fertility management under organic farming in Mediterranean region on soil properties and tomato production

NASA Astrophysics Data System (ADS)

Cavoski, Ivana; Chami, Ziad Al; Jarrar, Mohammad; Dumontet, Stefano; Mondelli, Donato

2014-05-01

In organic farming, plant production depends almost exclusively on nutrient deriving from the decomposition of exogenous organic matter in soil which is able to provide significant quantities of several important nutrients for the plant growth. However, in the soil the timing and amount of mineralization often does not coincide with crop nutritional need, making in-season fertilization necessary. The Regulation (EC) No 889/2008 on organic farming standards recognizes these needs and allows the use of a limited range fertilizers and soil conditioners (inputs) in order to meet nutritional needs of the plants and to achieve short term economically viable yield. Short-term open field experiment was conducted at the Mediterranean Agronomic Institute of Bari (MAIB) located in Apulia region (Southern Italy) in order study the effects of different fertilization scenarios based on equilibrated nutritional requirement on tomato (Lycopersicon esculentum Mill, cv. San Marzano) production efficiency and soil chemical properties. In soil dressing phase, three months before planting, biochar (BCH), organic fertilizers (OF), combined treatment (BCH+OF), cattle manure and vineyard wood compost (MVC), dairy wastes industry and vineyard wood compost (DVC) and unamended soil as control (CON) were established. In the pre-crop phase, organic and/or mineral fertilizers were incorporated into the previous treatments except CON and BCH in order to achieve balanced N, P and K application rates for tomato plants. Different fertilization scenarios significantly increased the yields over CON and BCH treatments, maintaining fruits quality. In short period of time, most of the soil parameters remained invariable, only available phosphorus significantly increased in the treatments which received organic fertilizers maybe due to the slight reduction in soil pH. However, such results are not surprising, if we consider the quantity of amendments and fertilizers applied in the experiment, as well as a short term study. Future research needs to address the scope for increasing nutrient use efficiency and monitoring of soil nutrient pools in long term studies. Keywords: organic farming, fertility management, tomato crop, Biochar

Reinventing potato at the diploid level

USDA-ARS?s Scientific Manuscript database

The outcrossing polyploidy nature of cultivated potato has hindered the use of genomics resources to dissect the genetic basis of agronomically important traits. Reversion to the diploid level allows us to apply powerful tools toward this effort. Parthenogenesis generates diploid cultivated potato, ...

EFFECTS OF SIMULATED ACIDIC RAIN ON YIELDS OF FIELD-GROWN CROPS

EPA Science Inventory

Experiments were performed to determine the effects of simulated acidic rainfall on yields of radish (Raphanus sativa), garden beet (Beta vulgaris), kidney bean (Phaseolus vulgaris), and alfalfa (Medicago sativa) grown under standard agronomic practices. The experimental design a...

AGRONOMIC OPTIMIZATION FOR PHYTOREMEDIATION OF POLYCYCLIC AROMATIC HYDROCARBONS

EPA Science Inventory

Phytoremediation is a low-cost method of using plants to degrade, volatilize or sequester organic and metal pollutants that has been used in efforts to remediate sites contaminated with polycyclic aromatic hydrocarbon (PAH) refinery wastes. Non-native plant species aggressivel...

Drainage Water Filtration

USDA-ARS?s Scientific Manuscript database

Tile drainage discharge from managed turf is known to carry elevated concentrations of agronomic fertilizers and chemicals. One approach being considered to reduce the transport is end-of-tile-filters. Laboratory and field studies have been initiated to address the efficacy of this approach. Result...

Field potential soil variability index to identify precision agriculture opportunity

USDA-ARS?s Scientific Manuscript database

Precision agriculture (PA) technologies used for identifying and managing within-field variability are not widely used despite decades of advancement. Technological innovations in agronomic tools, such as canopy reflectance or electrical conductivity sensors, have created opportunities to achieve a ...

Registration of 'Prevail' hard red spring wheat

USDA-ARS?s Scientific Manuscript database

Grower and end-user acceptance of new Hard Red Spring Wheat (HRSW; Triticum aestivum L.) cultivars is largely contingent upon satisfactory agronomic performance, end-use quality potential, and disease resistance levels. Additional characteristics, such as desirable plant height, can also contribute...

Artificial Selection for Determinate Growth Habit in Soybean

USDA-ARS?s Scientific Manuscript database

Determinacy is an agronomically important trait associated with the domestication in soybean (Glycine max). Most soybean cultivars are classifiable into indeterminate and determinate growth habit, while Glycine soja, the wild progenitor of soybean, is indeterminate. Indeterminate (Dt1) and determina...

Proteomics characterization of intermediate wheatgrass (Thinopyrum intermedium) flour proteins

USDA-ARS?s Scientific Manuscript database

Thinopyrum intermedium, commonly known as intermediate wheatgrass (IWG), is a perennial crop with favorable agronomic characteristics and nutritional benefits. IWG lines are deficient in high molecular weight glutenins (HMWG), responsible for dough strength. A detailed characterization of IWG flou...

Association among US locations for orchardgrass production

USDA-ARS?s Scientific Manuscript database

Thirteen orchardgrass (Dacylis glomerata L.) cultivars were evaluated over four years at five U.S. field locations in Kentucky, Pennsylvania, Utah, Virginia, and Wisconsin. The objective was to determine the relationship among the five locations for orchardgrass agronomic performance. Cultivar by en...

Multivariate analysis: greater insights into complex systems

USDA-ARS?s Scientific Manuscript database

Many agronomic researchers measure and collect multiple response variables in an effort to understand the more complex nature of the system being studied. Multivariate (MV) statistical methods encompass the simultaneous analysis of all random variables (RV) measured on each experimental or sampling ...

Composition and assembly of a spectral and agronomic data base for 1980 spring small grain segments

NASA Technical Reports Server (NTRS)

Helmer, D.; Krantz, J.; Kinsler, M.; Tomkins, M.

1983-01-01

A data set was assembled which consolidates the LANDSAT spectral data, ground truth observation data, and analyst cloud screening data for 28 spring small grain segments collected during the 1980 crop year.

Grand challenges for crop science

USDA-ARS?s Scientific Manuscript database

Crop science is a highly integrative science using the disciplines of conventional plant breeding, transgenic crop improvement, plant physiology, and cropping system sciences to develop improved varieties of agronomic, turf, and forage crops to produce feed, food, fuel, and fiber for our world's gro...

Agrobacterium-mediated genetic transformation of Coffea arabica (L.) is greatly enhanced by using established embryogenic callus cultures

PubMed Central

2011-01-01

Background Following genome sequencing of crop plants, one of the main challenges today is determining the function of all the predicted genes. When gene validation approaches are used for woody species, the main obstacle is the low recovery rate of transgenic plants from elite or commercial cultivars. Embryogenic calli have frequently been the target tissue for transformation, but the difficulty in producing or maintaining embryogenic tissues is one of the main problems encountered in genetic transformation of many woody plants, including Coffea arabica. Results We identified the conditions required for successful long-term proliferation of embryogenic cultures in C. arabica and designed a highly efficient and reliable Agrobacterium tumefaciens-mediated transformation method based on these conditions. The transformation protocol with LBA1119 harboring pBin 35S GFP was established by evaluating the effect of different parameters on transformation efficiency by GFP detection. Using embryogenic callus cultures, co-cultivation with LBA1119 OD600 = 0.6 for five days at 20 °C enabled reproducible transformation. The maintenance conditions for the embryogenic callus cultures, particularly a high auxin to cytokinin ratio, the age of the culture (optimum for 7-10 months of proliferation) and the use of a yellow callus phenotype, were the most important factors for achieving highly efficient transformation (> 90%). At the histological level, successful transformation was related to the number of proembryogenic masses present. All the selected plants were proved to be transformed by PCR and Southern blot hybridization. Conclusion Most progress in increasing transformation efficiency in coffee has been achieved by optimizing the production conditions of embryogenic cultures used as target tissues for transformation. This is the first time that a strong positive effect of the age of the culture on transformation efficiency was demonstrated. Our results make Agrobacterium-mediated transformation of embryogenic cultures a viable and useful tool both for coffee breeding and for the functional analysis of agronomically important genes. PMID:21595964

Real cases study through computer applications for futures Agricultural Engineers

NASA Astrophysics Data System (ADS)

Moratiel, R.; Durán, J. M.; Tarquis, A. M.

2010-05-01

One of the huge concerns on the higher engineer education is the lag of real cases study that the future professionals need in the work and corporation market. This concern was reflected in Bologna higher education system including recommendations in this respect. The knowhow as why this or other methodology is one of the keys to resolve this problem. In the last courses given in Department of Crop Production, at the Agronomy Engineer School of Madrid (Escuela Técnica Superior de Ingenieros Agrónomos, UPM) we have developed more than one hundred applications in Microsoft Excel®. Our aim was to show different real scenarios which the future Agronomic Engineers can be found in their professional life and with items related to crop production field. In order to achieve our target, each application in Excel presents a file text in which is explained the theoretical concepts and the objectives, as well as some resources used from Excel syntax. In this way, the student can understand and use of such application, even they can modify and customize it for a real case presented in their context and/or master project. This electronic monograph gives an answer to the need to manage data in several real scenarios showed in lectures, calculus resolution, information analysis and manage worksheets in a professional and student level.

Reducing anti-nutritional factor and enhancing yield with advancing time of planting and zinc application in grasspea in Ethiopia.

PubMed

Sarker, Ashutosh; Fikre, Asnake; El-Moneim, Ali M Abd; Nakkoul, Hani; Singh, Murari

2018-01-01

Grasspea (Lathyrus sativus L.) is an important pulse crop for food, feed and sustainable crop production systems in Ethiopia. Despite its advantages in nutrition and adaptability to harsh climate and low fertile soil, it contains a neurotoxin, β-N-oxalyl-α,β-diamiono propionic acid (β-ODAP), which paralyses the lower limbs and is affected by genotypic and agronomic factors. To determine the effect of zinc application and planting date on yield and β-ODAP content of two genotypes, experiments were conducted in two regions of Ethiopia. The main effects of variety, sowing date and zinc and their interactions were significant (P < 0.001) for β-ODAP and seed yield, which had a linear relationship with zinc. For the improved grasspea variety, an application of 20 kg ha -1 zinc showed a reduction of β-ODAP from 0.15% to 0.088% at Debre Zeit and 0.14% to 0.08% at Sheno and increased its yield from 841 kg ha -1 to 2260 kg ha -1 at Debre Zeit and from 715 to 1835 kg ha -1 at Sheno. Early sowing showed a reduction in ODAP content in relation to the late sowing. An application of Zn beyond even 20 kg ha -1 with an early sowing is recommended for the improved variety. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Enhanced atrazine degradation is widespread across the United States.

PubMed

Mueller, Thomas C; Parker, Ethan T; Steckel, Larry; Clay, Sharon A; Owen, Micheal Dk; Curran, William S; Currie, Randall; Scott, Robert; Sprague, Christy; Stephenson, Daniel O; Miller, Donnie K; Prostko, Eric P; Grichar, W James; Martin, James; Kruz, L Jason; Bradley, Kevin; Bernards, Mark L; Dotray, Peter; Knezevic, Stevan; Davis, Vince; Klein, Robert

2017-09-01

Atrazine (ATZ) has been a key herbicide for annual weed control in corn, with both a soil and post-emergence vegetation application period. Although enhanced ATZ degradation in soil with a history of ATZ use has been reported, the extent and rate of degradation in the US Corn Belt is uncertain. We show that enhanced ATZ degradation exists across much of the country. Soils from 15 of 16 surveyed states had enhanced ATZ degradation. The average ATZ half-life was only 2.3 days in ATZ history soils, compared with an average 14.5 days in soils with no previous ATZ use, meaning that ATZ degrades an average 6 times faster in soils with previous ATZ use. When ATZ is used for several years, enhanced degradation will undoubtedly change the way ATZ is used in agronomic crops and also its ultimate environmental fate. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.