Arsenic resistance strategy in Pantoea sp. IMH: Organization, function and evolution of ars genes.

PubMed

Wang, Liying; Zhuang, Xuliang; Zhuang, Guoqiang; Jing, Chuanyong

2016-12-14

Pantoea sp. IMH is the only bacterium found in genus Pantoea with a high As resistance capacity, but its molecular mechanism is unknown. Herein, the organization, function, and evolution of ars genes in IMH are studied starting with analysis of the whole genome. Two ars systems - ars1 (arsR1B1C1H1) and ars2 (arsR2B2C2H2) - with low sequence homology and two arsC-like genes, were found in the IMH genome. Both ars1 and ars2 are involved in the As resistance, where ars1 is the major contributor at 15 °C and ars2 at 30 °C. The difference in the behavior of these two ars systems is attributed to the disparate activities of their arsR promoters at different temperatures. Sequence analysis based on concatenated ArsRBC indicates that ars1 and ars2 clusters may be acquired from Franconibacter helveticus LMG23732 and Serratia marcescens (plasmid R478), respectively, by horizontal gene transfer (HGT). Nevertheless, two arsC-like genes, probably arising from the duplication of arsC, do not contribute to the As resistance. Our results indicate that Pantoea sp. IMH acquired two different As resistance genetic systems by HGT, allowing the colonization of changing ecosystems, and highlighting the flexible adaptation of microorganisms to resist As.

Arsenic resistance strategy in Pantoea sp. IMH: Organization, function and evolution of ars genes

PubMed Central

Wang, Liying; Zhuang, Xuliang; Zhuang, Guoqiang; Jing, Chuanyong

2016-01-01

Pantoea sp. IMH is the only bacterium found in genus Pantoea with a high As resistance capacity, but its molecular mechanism is unknown. Herein, the organization, function, and evolution of ars genes in IMH are studied starting with analysis of the whole genome. Two ars systems - ars1 (arsR1B1C1H1) and ars2 (arsR2B2C2H2) - with low sequence homology and two arsC-like genes, were found in the IMH genome. Both ars1 and ars2 are involved in the As resistance, where ars1 is the major contributor at 15 °C and ars2 at 30 °C. The difference in the behavior of these two ars systems is attributed to the disparate activities of their arsR promoters at different temperatures. Sequence analysis based on concatenated ArsRBC indicates that ars1 and ars2 clusters may be acquired from Franconibacter helveticus LMG23732 and Serratia marcescens (plasmid R478), respectively, by horizontal gene transfer (HGT). Nevertheless, two arsC-like genes, probably arising from the duplication of arsC, do not contribute to the As resistance. Our results indicate that Pantoea sp. IMH acquired two different As resistance genetic systems by HGT, allowing the colonization of changing ecosystems, and highlighting the flexible adaptation of microorganisms to resist As. PMID:27966630

Cloning, expression, cellular distribution, and role in chemotaxis of a C5a receptor in rainbow trout: the first identification of a C5a receptor in a nonmammalian species

USGS Publications Warehouse

Boshra, Hani; Li, Jun; Peters, Rodney; Hansen, John; Matlapudi, Anjan; Sunyer, J. Oriol

2004-01-01

C3a, C4a, and C5a anaphylatoxins generated during complement activation play a key role in inflammation. C5a is the most potent of the three anaphylatoxins in eliciting biological responses. The effects of C5a are mediated by its binding to C5a receptor (C5aR, CD88). To date, C5aR has only been identified and cloned in mammalian species, and its evolutionary history remains ill-defined. To gain insights into the evolution, conserved structural domains, and functions of C5aR, we have cloned and characterized a C5aR in rainbow trout, a teleost fish. The isolated cDNA encoded a 350-aa protein that showed the highest sequence similarity to C5aR from other species. Genomic analysis revealed the presence of one continuous exon encoding the entire open reading frame. Northern blot analysis showed significant expression of the trout C5a receptor (TC5aR) message in PBLs and kidney. Flow cytometric analysis showed that two Abs generated against two different areas of the extracellular N-terminal region of TC5aR positively stained the same leukocyte populations from PBLs. B lymphocytes and granulocytes comprised the majority of cells recognized by the anti-TC5aR. More importantly, these Abs inhibited chemotaxis of PBLs toward a chemoattractant fraction purified from complement-activated trout serum. Our data suggest that the split between C5aR and C3aR from a common ancestral molecule occurred before the emergence of teleost fish. Moreover, we demonstrate that the overall structure of C5aR as well as its role in chemotaxis have remained conserved for >300 million years.

Jet evolution in a dense medium: event-by-event fluctuations and multi-particle correlations

NASA Astrophysics Data System (ADS)

Escobedo, Miguel A.; Iancu, Edmond

2017-11-01

We study the gluon distribution produced via successive medium-induced branchings by an energetic jet propagating through a weakly-coupled quark-gluon plasma. We show that under suitable approximations, the jet evolution is a Markovian stochastic process, which is exactly solvable. For this process, we construct exact analytic solutions for all the n-point correlation functions describing the gluon distribution in the space of energy [M. A. Escobedo, E. Iancu, Event-by-event fluctuations in the medium-induced jet evolution, JHEP 05 (2016) 008. arXiv:arxiv:arXiv:1601.03629, doi:http://dx.doi.org/10.1007/JHEP05(2016)008, M. A. Escobedo, E. Iancu, Multi-particle correlations and KNO scaling in the medium-induced jet evolution, JHEP 12 (2016) 104. arXiv:arxiv:arXiv:1609.06104, doi:http://dx.doi.org/10.1007/JHEP12(2016)104]. Using these results, we study the event-by-event distribution of the energy lost by the jet at large angles and of the multiplicities of the soft particles which carry this energy. We find that the event-by-event fluctuations are huge: the standard deviation in the energy loss is parametrically as large as its mean value [M. A. Escobedo, E. Iancu, Event-by-event fluctuations in the medium-induced jet evolution, JHEP 05 (2016) 008. arXiv:arxiv:arXiv:1601.03629, doi:http://dx.doi.org/10.1007/JHEP05(2016)008]. This has important consequences for the phenomenology of di-jet asymmetry in Pb+Pb collisions at the LHC: it implies that the fluctuations in the branching process can contribute to the measured asymmetry on an equal footing with the geometry of the di-jet event (i.e. as the difference between the in-medium path lengths of the two jets). We compute the higher moments of the multiplicity distribution and identify a remarkable regularity known as Koba-Nielsen-Olesen (KNO) scaling [M. A. Escobedo, E. Iancu, Multi-particle correlations and KNO scaling in the medium-induced jet evolution, JHEP 12 (2016) 104. arXiv:arxiv:arXiv:1609.06104, doi:http://dx.doi.org/10.1007/JHEP12(2016)104

Seismic transect across the Lomonosov and Mendeleev Ridges: Constraints on the geological evolution of the Amerasia Basin, Arctic Ocean

NASA Astrophysics Data System (ADS)

Jokat, Wilfried; Ickrath, Michele; O'Connor, John

2013-10-01

We report on seismic and petrological data that provide new constraints on the geological evolution of the Amerasia Basin. A seismic reflection transect across the Makarov Basin, located between the Mendeleev and Lomonosov Ridges, shows a complete undisturbed sedimentary section of Mesozoic/Cenozoic age. In contrast to the Mendeleev Ridge, the margin of the Lomonosov Ridge is wide and shows horst and graben structures. We suggest that the Mendeleev Ridge is most likely volcanic in origin and support this finding with a 40Ar/39Ar isotopic age for a tholeiitic basalt sampled from the central Alpha/Mendeleev Ridge. Seismic reflection data for the Makarov Basin show no evidence of compressional features, consistent with the Lomonosov Ridge moving as a microplate in the Cenozoic. We propose that the Amerasia Basin moved as a single tectonic plate during the opening of the Eurasia Basin.

Using a Multibeam Echosounder to Monitor AN Artificial Reef

NASA Astrophysics Data System (ADS)

Tassetti, A. N.; Malaspina, S.; Fabi, G.

2015-04-01

Artificial reefs (ARs) have become popular technological interventions in shallow water environments characterized by soft seabed for a wide number of purposes, from fisheries/environmental protection and enhancement to research and tourism. AR deployment has the potential for causing significant hydrographical and biological changes in the receiving environments and, in turn, ARs are strongly affected by the surrounding area in terms of spatial arrangement and structural integrity as well as colonization by benthic communities and finfish. In this context, ARs require a systematic monitoring program that a multibeam echosounder (MBES) can provide better than other sampling methods such as visual dives and ROV inspections that are not quantitative and often influenced by water visibility and diver experience/skills. In this paper, some subsequent MBES surveys of the Senigallia scientifically-planned AR (Northern Adriatic Sea) are presented and state-of-the art data processing and visualization techniques are used to draw post-reef deployment comparisons and quantify the evolution of the reef in terms of spatial arrangement and bulk volume. These multibeam surveys play a leading part in a general multi-year program, started simultaneously with the AR design and deployment and aimed to map how the reef structure quantitatively changes over time, as well as it affects the sea-bottom morphology and the fishery resource. All the data, surveyed over years making use of different sampling methods such as visual and instrumental echosounding observations and catch rate surveys, gain a mechanistic and predictive understanding of how the Senigallia AR functions ecologically and physically across spatial and temporal scales during its design life

An MHD Simulation of Solar Active Region 11158 Driven with a Time-dependent Electric Field Determined from HMI Vector Magnetic Field Measurement Data

NASA Astrophysics Data System (ADS)

Hayashi, Keiji; Feng, Xueshang; Xiong, Ming; Jiang, Chaowei

2018-03-01

For realistic magnetohydrodynamics (MHD) simulation of the solar active region (AR), two types of capabilities are required. The first is the capability to calculate the bottom-boundary electric field vector, with which the observed magnetic field can be reconstructed through the induction equation. The second is a proper boundary treatment to limit the size of the sub-Alfvénic simulation region. We developed (1) a practical inversion method to yield the solar-surface electric field vector from the temporal evolution of the three components of magnetic field data maps, and (2) a characteristic-based free boundary treatment for the top and side sub-Alfvénic boundary surfaces. We simulate the temporal evolution of AR 11158 over 16 hr for testing, using Solar Dynamics Observatory/Helioseismic Magnetic Imager vector magnetic field observation data and our time-dependent three-dimensional MHD simulation with these two features. Despite several assumptions in calculating the electric field and compromises for mitigating computational difficulties at the very low beta regime, several features of the AR were reasonably retrieved, such as twisting field structures, energy accumulation comparable to an X-class flare, and sudden changes at the time of the X-flare. The present MHD model can be a first step toward more realistic modeling of AR in the future.

Mayer Kangri metamorphic complexes in Central Qiangtang (Tibet, western China): implications for the Triassic-early Jurassic tectonics associated with the Paleo-Tethys Ocean

NASA Astrophysics Data System (ADS)

Wang, Yixuan; Liang, Xiao; Wang, Genhou; Yuan, Guoli; Bons, Paul D.

2018-03-01

The Mesozoic orogeny in Central Qiangtang Metamorphic Belt, northern Tibet, provides important insights into the geological evolution of the Paleo-Tethys Ocean. However, the Triassic-early Jurassic tectonics, particularly those associated with the continental collisionstage, remains poorly constrained. Here we present results from geological mapping, structural analysis, P-T data, and Ar-Ar geochronology of the Mayer Kangri metamorphic complex. Our data reveal an E-W-trending, 2 km wide dome-like structure associated with four successive tectonic events during the Middle Triassic and Early Jurassic. Field observations indicate that amphibolite and phengite schist complexes in this complex are separated from the overlying lower greenschist mélange by normal faulting with an evident dextral shearing component. Open antiform-like S2 foliation of the footwall phengite schist truncates the approximately north-dipping structures of the overlying mélange. Microtextures and mineral chemistry of amphibole reveal three stages of growth: Geothermobarometric estimates yield temperatures and pressures of 524 °C and 0.88 GPa for pargasite cores, 386 °C and 0.34 GPa for actinolite mantles, and 404 °C and 0.76 GPa for winchite rims. Peak blueschist metamorphism in the phengite schist occurred at 0.7-1.1 GPa and 400 °C. Our Ar-Ar dating of amphibole reveals rim-ward decreasing in age bands, including 242.4-241.2 Ma, ≥202.6-196.8, and 192.9-189.8 Ma. The results provide evidence for four distinct phases of Mesozoic tectonic evolution in Central Qiangtang: (1) northward oceanic subduction beneath North Qiangtang ( 244-220 Ma); (2) syn-collisional slab-break off (223-202 Ma); (3) early collisional extension driven by buoyant extrusion flow from depth ( 202.6-197 Ma); and (4) post-collision contraction and reburial (195.6-188.7 Ma).

FIP BIAS EVOLUTION IN A DECAYING ACTIVE REGION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baker, D.; Yardley, S. L.; Driel-Gesztelyi, L. van

Solar coronal plasma composition is typically characterized by first ionization potential (FIP) bias. Using spectra obtained by Hinode’s EUV Imaging Spectrometer instrument, we present a series of large-scale, spatially resolved composition maps of active region (AR)11389. The composition maps show how FIP bias evolves within the decaying AR during the period 2012 January 4–6. Globally, FIP bias decreases throughout the AR. We analyzed areas of significant plasma composition changes within the decaying AR and found that small-scale evolution in the photospheric magnetic field is closely linked to the FIP bias evolution observed in the corona. During the AR’s decay phase,more » small bipoles emerging within supergranular cells reconnect with the pre-existing AR field, creating a pathway along which photospheric and coronal plasmas can mix. The mixing timescales are shorter than those of plasma enrichment processes. Eruptive activity also results in shifting the FIP bias closer to photospheric in the affected areas. Finally, the FIP bias still remains dominantly coronal only in a part of the AR’s high-flux density core. We conclude that in the decay phase of an AR’s lifetime, the FIP bias is becoming increasingly modulated by episodes of small-scale flux emergence, i.e., decreasing the AR’s overall FIP bias. Our results show that magnetic field evolution plays an important role in compositional changes during AR development, revealing a more complex relationship than expected from previous well-known Skylab results showing that FIP bias increases almost linearly with age in young ARs.« less

Quasi-static three-dimensional magnetic field evolution in solar active region NOAA 11166 associated with an X1.5 flare

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vemareddy, P.; Wiegelmann, T., E-mail: vema@prl.res.in, E-mail: wiegelmann@mps.mpg.de

We study the quasi-static evolution of coronal magnetic fields constructed from the non-linear force-free field (NLFFF) approximation aiming to understand the relation between the magnetic field topology and ribbon emission during an X1.5 flare in active region (AR) NOAA 11166. The flare with a quasi-elliptical and two remote ribbons occurred on 2011 March 9 at 23:13 UT over a positive flux region surrounded by negative flux at the center of the bipolar AR. Our analysis of the coronal magnetic structure with potential and NLFFF solutions unveiled the existence of a single magnetic null point associated with a fan-spine topology andmore » is co-spatial with the hard X-ray source. The footpoints of the fan separatrix surface agree with the inner edge of the quasi-elliptical ribbon and the outer spine is linked to one of the remote ribbons. During the evolution, the slow footpoint motions stressed the field lines along the polarity inversion line and caused electric current layers in the corona around the fan separatrix surface. These current layers trigger magnetic reconnection as a consequence of dissipating currents, which are visible as cusp-shaped structures at lower heights. The reconnection process reorganized the magnetic field topology whose signatures are observed at the separatrices/quasi-separatrix layer structure in both the photosphere and the corona during the pre-to-post flare evolution. In agreement with previous numerical studies, our results suggest that the line-tied footpoint motions perturb the fan-spine system and cause null point reconnection, which eventually causes the flare emission at the footpoints of the field lines.« less

Campaign datasets for ARM Cloud Aerosol Precipitation Experiment (ACAPEX)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leung, L. Ruby; Mei, Fan; Comstock, Jennifer

This campaign consisted of the deployment of the DOE ARM Mobile Facility 2 (AMF2) and the ARM Aerial Facility (AAF) G-1 in a field campaign called ARM Cloud Aerosol Precipitation Experiment (ACAPEX), which took place in conjunction with CalWater 2- a NOAA field campaign. The joint CalWater 2/ACAPEX field campaign aimed to improve understanding and modeling of large-scale dynamics and cloud and precipitation processes associated with ARs and aerosol-cloud interactions that influence precipitation variability and extremes in the western U.S. The observational strategy consisted of the use of land and offshore assets to monitor: 1. the evolution and structure ofmore » ARs from near their regions of development 2. the long-range transport of aerosols in the eastern North Pacific and potential interactions with ARs 3. how aerosols from long-range transport and local sources influence cloud and precipitation in the U.S. West Coast where ARs make landfall and post-frontal clouds are frequent.« less

IR signature of the photoionization-induced hydrophobic-->hydrophilic site switching in phenol-Arn clusters

NASA Astrophysics Data System (ADS)

Ishiuchi, Shun-ichi; Sakai, Makoto; Tsuchida, Yuji; Takeda, Akihiro; Kawashima, Yasutake; Dopfer, Otto; Müller-Dethlefs, Klaus; Fujii, Masaaki

2007-09-01

IR spectra of phenol-Arn (PhOH-Arn) clusters with n =1 and 2 were measured in the neutral and cationic electronic ground states in order to determine the preferential intermolecular ligand binding motifs, hydrogen bonding (hydrophilic interaction) versus π bonding (hydrophobic interaction). Analysis of the vibrational frequencies of the OH stretching motion, νOH, observed in nanosecond IR spectra demonstrates that neutral PhOH-Ar and PhOH -Ar2 as well as cationic PhOH +-Ar have a π-bound structure, in which the Ar atoms bind to the aromatic ring. In contrast, the PhOH +-Ar2 cluster cation is concluded to have a H-bound structure, in which one Ar atom is hydrogen-bonded to the OH group. This π →H binding site switching induced by ionization was directly monitored in real time by picosecond time-resolved IR spectroscopy. The π-bound νOH band is observed just after the ionization and disappears simultaneously with the appearance of the H-bound νOH band. The analysis of the picosecond IR spectra demonstrates that (i) the π →H site switching is an elementary reaction with a time constant of ˜7ps, which is roughly independent of the available internal vibrational energy, (ii) the barrier for the isomerization reaction is rather low(<100cm-1), (iii) both the position and the width of the H-bound νOH band change with the delay time, and the time evolution of these spectral changes can be rationalized by intracluster vibrational energy redistribution occurring after the site switching. The observation of the ionization-induced switch from π bonding to H bonding in the PhOH +-Ar2 cation corresponds to the first manifestation of an intermolecular isomerization reaction in a charged aggregate.

The tectonometamorphic evolution of the Apuseni Mountains (Romania): Geodynamic constraints for the evolution of the Alps-Carpathians-Dinaride system of orogens

NASA Astrophysics Data System (ADS)

Reiser, Martin; Schuster, Ralf; Fügenschuh, Bernhard

2015-04-01

New structural, thermobarometric and geochronological data allow integrating kinematics, timing and intensity of tectonic phases into a geodynamic model of the Apuseni Mountain, which provides new constraints for the evolution of the Alps-Carpathians-Dinaride system of orogens. Strong differences in terms of deformation directions between Early and Late Cretaceous events provide new constraints on the regional geodynamic evolution during the Cretaceous. Geochronological and structural data evidence a Late Jurassic emplacement of the South Apuseni Ophiolites on top of the Biharia Nappe System (Dacia Mega-Unit), situated in an external position at the European margin. Following the emplacement of the ophiolites, three compressive deformation phases affected the Apuseni Mountains during Alpine orogeny: a) NE-directed in-sequence nappe stacking and regional metamorphic overprinting under amphibolite-facies conditions during the Early Cretaceous ("Austrian Phase"), b) NW-directed thrusting and folding, associated with greenschist-facies overprinting, during the early Late Cretaceous ("Turonian Phase") and c) E-W internal folding together with brittle thrusting during the latest Cretaceous ("Laramian Phase"). Major tectonic unroofing and exhumation at the transition from Early to Late Cretaceous times is documented through new Sm-Nd Grt, Ar-Ar Ms and Rb-Sr Bt ages from the study area and resulted in a complex thermal structure with strong lateral and vertical thermal gradients. Nappe stacking and medium-grade metamorphic overprinting during the Early Cretaceous exhibits striking parallels between the evolution of the Tisza-Dacia Mega-Units and the Austroalpine Nappes (ALCAPA Mega-Unit) and evidences a close connection. However, Late Cretaceous tectonic events in the study area exhibit strong similarities with the Dinarides. Thus, the Apuseni Mountains represent the "missing link" between the Early Cretaceous Meliata subduction (associated with obduction of ophiolites) and the Neotethys subduction during Late Cretaceous times.

Impurity incorporation, deposition kinetics, and microstructural evolution in sputtered Ta films

NASA Astrophysics Data System (ADS)

Whitacre, Jay Fredric

There is an increasing need to control the microstructure in thin sputtered Ta films for application as high-temperature coatings or diffusion barriers in microelectronic interconnect structures. To this end, the relationship between impurity incorporation, deposition kinetics, and microstructural evolution was examined for room-temperature low growth rate DC magnetron sputtered Ta films. Impurity levels present during deposition were controlled by pumping the chamber to various base pressures before growth. Ar pressures ranging from 2 to 20 mTorr were used to create contrasting kinetic environments in the sputter gas. This affected both the distribution of adatom kinetic energies at the substrate as well as the rate of impurity desorption from the chamber walls: at higher Ar pressures adatoms has lower kinetic energies, and there was an increase in impurity concentration. X-ray diffraction, high-resolution transmission electron microscopy (HREM), transmission electron diffraction (TED), scanning electron microscopy (SEM), secondary ion mass spectrometry (SIMS), and x-ray photoelectron. spectroscopy (XPS) were used to examine film crystallography, microstructure, and composition. A novel laboratory-based in-situ x-ray diffractometer was constructed. This new set-up allowed for the direct observation of microstructural evolution during growth. Films deposited at increasingly higher Ar pressures displayed a systematic decrease in grain size and degree of texturing, while surface morphology was found to vary from a nearly flat surface to a rough surface with several length scales of organization. In-situ x-ray results showed that the rate of texture evolution was found to be much higher in films grown using lower Ar pressures. These effects were studied in films less than 200 A thick using high resolution x-ray diffraction in conjunction with a synchrotron light source (SSRL B.L. 7-2). Films grown using higher Ar pressures (above 10 mTorr) with a pre-growth base pressure of 1 x 10--6 Torr had grains less than 10 nm in diameter and significant amorphous content Calculated radial distribution functions show a significant increase in average inter-atomic spacing in films grown using higher base pressures and Ar pressures. The amorphous content in the films was determined via comparison between ideal crystalline diffraction patterns and actual data. Thinner films grown at higher Ar pressures had relatively greater amorphous content. Real-time process control using the in-situ diffractometer was also demonstrated. The effects observed are discussed in the context of previous theories and experiments that document room-temperature sputter film growth. The changes in film microstructure observed were impurity mediated. Specifically, oxygen desorbed from the chamber walls during growth were incorporated into the film and subsequently limited grain development and texturing. A second phase consisting of amorphous Ta2O5 formed between the grain nuclei. Adatom kinetics played a role in determining surface morphology: at low Ar pressures (2 mTorr) significant adatom kinetic energies served to flattened the film surface, though impurity levels dominated grain development even in these conditions.

2.7 MeV Ar11+ ion irradiation induced structural evolution in Lu2(Ti2-xLux)O7-x/2 pyrochlores

NASA Astrophysics Data System (ADS)

Yang, D. Y.; Liu, C. G.; Zhang, K. Q.; Xia, Y.; Chen, L. J.; Liu, H.; Li, Y. H.

2015-11-01

This paper aims to study the radiation effects of nonstoichiometric pyrochlore series Lu2(Ti2-xLux)O7-x/2 (x = 0-0.667). Polycrystalline Lu2(Ti2-xLux)O7-x/2 samples were irradiated with 2.7 MeV Ar11+ ions up to a fluence of 8 × 1014 ions/cm2. The irradiated samples were characterized using grazing incidence X-ray diffraction technique. The results reveal that Lu2(Ti2-xLux)O7-x/2 samples undergo significant amorphization and lattice swelling upon irradiation. Specifically, the amorphization process is predominantly driven by ballistic nuclear energy deposition of Ar11+ ions at this energy regime, which can be well described by a direct-impact/defect-stimulated model. Both the amorphization fraction and the relative variation of lattice parameter decrease with increasing x, showing a strong dependence on the chemical composition. The results are then discussed in the framework of the structural disorder and recovery ability from damage, applying an atomic layer model.

Anomalous evolution of Ar metastable density with electron density in high density Ar discharge

DOE Office of Scientific and Technical Information (OSTI.GOV)

Park, Min; Chang, Hong-Young; You, Shin-Jae

2011-10-15

Recently, an anomalous evolution of argon metastable density with plasma discharge power (electron density) was reported [A. M. Daltrini, S. A. Moshkalev, T. J. Morgan, R. B. Piejak, and W. G. Graham, Appl. Phys. Lett. 92, 061504 (2008)]. Although the importance of the metastable atom and its density has been reported in a lot of literature, however, a basic physics behind the anomalous evolution of metastable density has not been clearly understood yet. In this study, we investigated a simple global model to elucidate the underlying physics of the anomalous evolution of argon metastable density with the electron density. Onmore » the basis of the proposed simple model, we reproduced the anomalous evolution of the metastable density and disclosed the detailed physics for the anomalous result. Drastic changes of dominant mechanisms for the population and depopulation processes of Ar metastable atoms with electron density, which take place even in relatively low electron density regime, is the clue to understand the result.« less

NON-NEUTRALIZED ELECTRIC CURRENT PATTERNS IN SOLAR ACTIVE REGIONS: ORIGIN OF THE SHEAR-GENERATING LORENTZ FORCE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Georgoulis, Manolis K.; Titov, Viacheslav S.; Mikic, Zoran

Using solar vector magnetograms of the highest available spatial resolution and signal-to-noise ratio, we perform a detailed study of electric current patterns in two solar active regions (ARs): a flaring/eruptive and a flare-quiet one. We aim to determine whether ARs inject non-neutralized (net) electric currents in the solar atmosphere, responding to a debate initiated nearly two decades ago that remains inconclusive. We find that well-formed, intense magnetic polarity inversion lines (PILs) within ARs are the only photospheric magnetic structures that support significant net current. More intense PILs seem to imply stronger non-neutralized current patterns per polarity. This finding revises previousmore » works that claim frequent injections of intense non-neutralized currents by most ARs appearing in the solar disk but also works that altogether rule out injection of non-neutralized currents. In agreement with previous studies, we also find that magnetically isolated ARs remain globally current-balanced. In addition, we confirm and quantify the preference of a given magnetic polarity to follow a given sense of electric currents, indicating a dominant sense of twist in ARs. This coherence effect is more pronounced in more compact ARs with stronger PILs and must be of sub-photospheric origin. Our results yield a natural explanation of the Lorentz force, invariably generating velocity and magnetic shear along strong PILs, thus setting a physical context for the observed pre-eruption evolution in solar ARs.« less

Synthesis of sponge-like hydrophobic NiBi3 surface by 200 keV Ar ion implantation

NASA Astrophysics Data System (ADS)

Siva, Vantari; Datta, D. P.; Chatterjee, S.; Varma, S.; Kanjilal, D.; Sahoo, Pratap K.

2017-07-01

Sponge-like nanostructures develop under Ar-ion implantation of a Ni-Bi bilayer with increasing ion fluence at room temperature. The surface morphology features different stages of evolution as a function of ion fluence, finally resulting in a planar surface at the highest fluence. Our investigations on the chemical composition reveal a spontaneous formation of NiBi3 phase on the surface of the as deposited bilayer film. Interestingly, we observe a competition between crystallization and amorphization of the existing poly-crystalline phases as a function of the implanted fluence. Measurements of contact angle by sessile drop method clearly show the ion-fluence dependent hydrophobic nature of the nano-structured surfaces. The wettability has been correlated with the variation in roughness and composition of the implanted surface. In fact, our experimental results confirm dominant effect of ion-sputtering as well as ion-induced mixing at the bilayer interface in the evolution of the sponge-like surface.

Comparative Genomic Analysis Reveals Organization, Function and Evolution of ars Genes in Pantoea spp.

PubMed

Wang, Liying; Wang, Jin; Jing, Chuanyong

2017-01-01

Numerous genes are involved in various strategies to resist toxic arsenic (As). However, the As resistance strategy in genus Pantoea is poorly understood. In this study, a comparative genome analysis of 23 Pantoea genomes was conducted. Two vertical genetic arsC -like genes without any contribution to As resistance were found to exist in the 23 Pantoea strains. Besides the two arsC -like genes, As resistance gene clusters arsRBC or arsRBCH were found in 15 Pantoea genomes. These ars clusters were found to be acquired by horizontal gene transfer (HGT) from sources related to Franconibacter helveticus, Serratia marcescens , and Citrobacter freundii . During the history of evolution, the ars clusters were acquired more than once in some species, and were lost in some strains, producing strains without As resistance capability. This study revealed the organization, distribution and the complex evolutionary history of As resistance genes in Pantoea spp.. The insights gained in this study improved our understanding on the As resistance strategy of Pantoea spp. and its roles in the biogeochemical cycling of As.

Comparative Genomic Analysis Reveals Organization, Function and Evolution of ars Genes in Pantoea spp.

PubMed Central

Wang, Liying; Wang, Jin; Jing, Chuanyong

2017-01-01

Numerous genes are involved in various strategies to resist toxic arsenic (As). However, the As resistance strategy in genus Pantoea is poorly understood. In this study, a comparative genome analysis of 23 Pantoea genomes was conducted. Two vertical genetic arsC-like genes without any contribution to As resistance were found to exist in the 23 Pantoea strains. Besides the two arsC-like genes, As resistance gene clusters arsRBC or arsRBCH were found in 15 Pantoea genomes. These ars clusters were found to be acquired by horizontal gene transfer (HGT) from sources related to Franconibacter helveticus, Serratia marcescens, and Citrobacter freundii. During the history of evolution, the ars clusters were acquired more than once in some species, and were lost in some strains, producing strains without As resistance capability. This study revealed the organization, distribution and the complex evolutionary history of As resistance genes in Pantoea spp.. The insights gained in this study improved our understanding on the As resistance strategy of Pantoea spp. and its roles in the biogeochemical cycling of As. PMID:28377759

Detailed analysis of dynamic evolution of three Active Regions at the photospheric level before flare and CME occurrence

NASA Astrophysics Data System (ADS)

Ye, Yudong; Korsós, M. B.; Erdélyi, R.

2018-01-01

We present a combined analysis of the applications of the weighted horizontal magnetic gradient (denoted as WGM in Korsós et al. (2015)) method and the magnetic helicity tool (Berger and Field, 1984) employed for three active regions (ARs), namely NOAA AR 11261, AR 11283 and AR 11429. We analysed the time series of photospheric data from the Solar Dynamics Observatory taken between August 2011 and March 2012. During this period the three ARs produced a series of flares (eight M- and six X-class) and coronal mass ejections (CMEs). AR 11261 had four M-class flares and one of them was accompanied by a fast CME. AR 11283 had similar activities with two M- and two X-class flares, but only with a slow CME. Finally, AR 11429 was the most powerful of the three ARs as it hosted five compact and large solar flare and CME eruptions. For applying the WGM method we employed the Debrecen sunspot data catalogue, and, for estimating the magnetic helicity at photospheric level we used the Space-weather HMI Active Region Patches (SHARP's) vector magnetograms from SDO/HMI (Solar Dynamics Observatory/Helioseismic and Magnetic Imager). We followed the evolution of the components of the WGM and the magnetic helicity before the flare and CME occurrences. We found a unique and mutually shared behaviour, called the U-shaped pattern, of the weighted distance component of WGM and of the shearing component of the helicity flux before the flare and CME eruptions. This common pattern is associated with the decreasing-receding phases yet reported only known to be a necessary feature prior to solar flare eruption(s) but found now at the same time in the evolution of the shearing helicity flux. This result leads to the conclusions that (i) the shearing motion of photospheric magnetic field may be a key driver for solar eruption in addition to the flux emerging process, and that (ii) the found decreasing-approaching pattern in the evolution of shearing helicity flux may be another precursor indicator for improving the forecasting of solar eruptions.

Augmented reality in laparoscopic surgical oncology.

PubMed

Nicolau, Stéphane; Soler, Luc; Mutter, Didier; Marescaux, Jacques

2011-09-01

Minimally invasive surgery represents one of the main evolutions of surgical techniques aimed at providing a greater benefit to the patient. However, minimally invasive surgery increases the operative difficulty since the depth perception is usually dramatically reduced, the field of view is limited and the sense of touch is transmitted by an instrument. However, these drawbacks can currently be reduced by computer technology guiding the surgical gesture. Indeed, from a patient's medical image (US, CT or MRI), Augmented Reality (AR) can increase the surgeon's intra-operative vision by providing a virtual transparency of the patient. AR is based on two main processes: the 3D visualization of the anatomical or pathological structures appearing in the medical image, and the registration of this visualization on the real patient. 3D visualization can be performed directly from the medical image without the need for a pre-processing step thanks to volume rendering. But better results are obtained with surface rendering after organ and pathology delineations and 3D modelling. Registration can be performed interactively or automatically. Several interactive systems have been developed and applied to humans, demonstrating the benefit of AR in surgical oncology. It also shows the current limited interactivity due to soft organ movements and interaction between surgeon instruments and organs. If the current automatic AR systems show the feasibility of such system, it is still relying on specific and expensive equipment which is not available in clinical routine. Moreover, they are not robust enough due to the high complexity of developing a real-time registration taking organ deformation and human movement into account. However, the latest results of automatic AR systems are extremely encouraging and show that it will become a standard requirement for future computer-assisted surgical oncology. In this article, we will explain the concept of AR and its principles. Then, we will review the existing interactive and automatic AR systems in digestive surgical oncology, highlighting their benefits and limitations. Finally, we will discuss the future evolutions and the issues that still have to be tackled so that this technology can be seamlessly integrated in the operating room. Copyright © 2011 Elsevier Ltd. All rights reserved.

Evolution of the magnetic helicity flux during the formation and eruption of flux ropes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Romano, P.; Zuccarello, F. P.; Guglielmino, S. L.

We describe the evolution and the magnetic helicity flux for two active regions (ARs) since their appearance on the solar disk: NOAA 11318 and NOAA 11675. Both ARs hosted the formation and destabilization of magnetic flux ropes. In the former AR, the formation of the flux rope culminated in a flare of C2.3 GOES class and a coronal mass ejection (CME) observed by Large Angle and Spectrometric Coronagraph Experiment. In the latter AR, the region hosting the flux rope was involved in several flares, but only a partial eruption with signatures of a minor plasma outflow was observed. We foundmore » a different behavior in the accumulation of the magnetic helicity flux in the corona, depending on the magnetic configuration and on the location of the flux ropes in the ARs. Our results suggest that the complexity and strength of the photospheric magnetic field is only a partial indicator of the real likelihood of an AR producing the eruption of a flux rope and a subsequent CME.« less

Synoptic evolution of Atmospheric River landfalls in Northern California and the pre-conditioning of their characteristics by the climate state

NASA Astrophysics Data System (ADS)

Gershunov, A.; Guirguis, K.; Shulgina, T.; Clemesha, R.; Ralph, M.

2017-12-01

Atmospheric Rivers (ARs) contribute the lion's share of water resources for California, but can also cause flooding and draw heavily on emergency resources of state and local governments. Comprehensive probabilistic tools relating landfalling ARs to pre-existing weather/climate conditions could be useful for subseasonal forecasting, emergency preparedness and water resource management. We examine ARs targeting the Northern California coast using long-term observations of synoptic-scale circulation, high-resolution precipitation, and a seven-decade-long catalog of AR landfalls to quantify distinct orientations of landfalling ARs. Using a probabilistic approach to relate these historic events to precursor weather patterns, we identify synoptic circulation patterns that precede AR landfalls at various lead times in the range of 0-30 days. Examination of the evolution of these precursor patterns reveals subtle but important differences in the atmospheric states that lead to AR landfalls versus those that don't. Synoptic precursors can also differentiate between orientations of ARs at landfall, which produce rather different precipitation patterns over the region's complex topography. Moreover, low-frequency climate forcing appears to modulate the likelihood of AR landfalls, as well as their preferred orientations. These results provide a link between seasonal and subseasonal timescales and suggest a new approach toward extended-range prediction of land-falling atmospheric rivers and their related precipitation.

Lesser Antillean Arc Initiation and Migration as a Proxy of Slab Dynamics: Geothermochronology, Thermobarometry and Structure of Saint Martin Granodiorites

NASA Astrophysics Data System (ADS)

Noury, M.; Münch, P.; Philippon, M. M.; Bernet, M.; Bruguier, O.; Balvay, M.

2017-12-01

In subduction zones, volcanic arc initiation, cessation, migration and associated upper plate deformation -i.e faulting and vertical motions- reflect large-scale slab dynamics. At the northeastern edge of the Caribbean plate, the Greater Caribbean subduction zone waned out during the Mid Eocene, following the subduction of the Bahamas bank. This arc cessation was contemporaneous with (i) a plate boundary re-organization (evolving from subduction to transform), (ii) upper plate deformation and (iii) arc initiation in the Lesser Antilles. As part of the GAARANTI project that aims at unraveling the relationships between the evolution of terrestrial Caribbean biodiversity and vertical motions resulting from the Lesser Antilles subduction zone dynamic, we study the Saint Martin granodiorites, one of the two Oligocene plutons outcropping in the Lesser Antillean forearc. We investigate the birth and evolution of the Lesser Antillean arc and its thermo-mechanical impact on the Caribbean upper plate. In order to characterize the P,T,t path of the pluton we performed several thermochronological analyses covering a wide range of temperature (U-Pb on zircon -Tc 850°C, Ar/Ar on amphibole -Tc 550°C- and biotite -Tc 325°C-, zircon and apatite fission-tracks -Tc 250 and 110°C, respectively as well as U-Th/He on apatite -Tc 60°C) coupled with in-situ thermobarometry analyses (Al in hornblendes) and structural data. Geochronology and thermobarometry reveal that the granodiorites emplaced at ca. 28 Ma, at a depth of 5 km. Based on the age difference between amphibole and biotite Ar/Ar ages, we show that the northern pluton cooled faster than the southern one. Preliminary thermochronological results show a fast cooling between 29 and 25 Ma and then a continuous and slow cooling since 25 Ma and inverse modeling points to a 10 Ma cooling event. Our investigations give insights on the thermo-mechanical evolution of the arc-forearc region of the Lesser Antilles subduction zone. Considering a mean high of 1200m for the volcanic edifice, the pluton emplaced at shallow depth (ca. 4 km) within the Caribbean plate. The pluton is bounded by N-S faults that could possibly be responsible for the 10 Ma exhumation event. This thermal event may be contemporaneous with the westward arc migration during Miocene times and may reflect slab flattening.

Ablation and cone formation mechanism on CR-39 by ArF laser irradiation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shakeri Jooybari, B., E-mail: baninshakery@gmail.com, E-mail: hafarideh@aut.ac.ir; Nuclear Science and Technology Research Institute NSRT, Tehran; Afarideh, H., E-mail: baninshakery@gmail.com, E-mail: hafarideh@aut.ac.ir

In this work, chemical properties, surface modification, and micro structures formation on ablated polyallyl di-glycol carbonate (CR-39) polymer by ArF laser irradiation (λ = 193 nm) at various fluences and pulse number were investigated. CR-39 samples have been irradiated with an ArF laser (193 nm) at a repetition rate of 1 Hz. Threshold fluence of ablation and effective absorption coefficient of CR-39 were determined. Conical microstructures (Taylor cone) formed on laser-ablated CR-39 exhibit: smooth, Taylor cone shape walls and sharp tips together with interference and well defined fringe-structure with a period of 230 nm, around cone base. Mechanism of cone formation and cone evolution of CR-39more » ablated surface were investigated by change of fluences (at a given pulse number) and pulse number (at a given fluence). Cone height, cone base, and region of interface were increased in micrometer steps by increasing the total fluence. Depression on the base of the cone and the circular fringe were simulated. FTIR spectra were measured and energy dispersive x-ray analysis of irradiated and un-irradiated samples was performed.« less

The evolution of flaring and non-flaring active regions

NASA Astrophysics Data System (ADS)

Kilcik, A.; Yurchyshyn, V.; Sahin, S.; Sarp, V.; Obridko, V.; Ozguc, A.; Rozelot, J. P.

2018-06-01

According to the modified Zurich classification, sunspot groups are classified into seven different classes (A, B, C, D, E, F and H) based on their morphology and evolution. In this classification, classes A and B, which are small groups, describe the beginning of sunspot evolution, while classes D, E and F describe the large and evolved groups. Class C describes the middle phase of sunspot evolution and the class H describes the end of sunspot evolution. Here, we compare the lifetime and temporal evolution of flaring and non-flaring active regions (ARs), and the flaring effect on ARs in these groups in detail for the last two solar cycles (1996 through 2016). Our main findings are as follows: (i) Flaring sunspot groups have longer lifetimes than non-flaring ones. (ii) Most of the class A, B and C flaring ARs rapidly evolve to higher classes, while this is not applicable for non-flaring ARs. More than 50 per cent of the flaring A, B and C groups changed morphologically, while the remaining D, E, F and H groups did not change remarkably after the flare activity. (iii) 75 per cent of all flaring sunspot groups are large and complex. (iv) There is a significant increase in the sunspot group area in classes A, B, C, D and H after flaring activity. In contrast, the sunspot group area of classes E and F decreased. The sunspot counts of classes D, E and F decreased as well, while classes A, B, C and H showed an increase.

Mineralogy and Ar-Ar Age of the Tarahumara IIE Iron, with Reference to the Origin of Alkali-Rich Materials

NASA Technical Reports Server (NTRS)

Takeda, Hiroshi; Bogard, Donald D.; Otsuki, Mayumi; Ishii, Teruaki

2003-01-01

Silicate inclusions in nine known IIE irons show diversity in mineralogy, and Colomera, Kodaikanal, Elga and Miles contain alkali-rich silicate inclusions. Bogard et al. showed evidence of a complex parent body evolution for IIE irons based on Ar-39-Ar-40 ages. Colomera contained a sanidine-rich surface inclusion and the K-enrichment trends in the Na-rich inclusions are different from those of other IIEs. To elucidate the origin of K-rich materials, we studied the mineralogy and Ar-Ar age of silicate inclusions from the Tarahumara IIE iron meteorite.

A reevaluation of the proposed spin-down of the white dwarf pulsar in AR Scorpii.

NASA Astrophysics Data System (ADS)

Potter, Stephen B.; Buckley, David A. H.

2018-05-01

We present high-speed optical photometric observations, spanning ˜2 years, of the recently-discovered white dwarf pulsar AR Scorpii. The amplitudes of the orbital, spin and beat modulations appear to be remarkably stable and repeatable over the time span of our observations. It has been suggested that the polarized and non-polarized emission from AR Scorpii is powered by the spin-down of the white dwarf. However, we find that our new data is inconsistent with the published spin-down ephemeris. Whilst our data is consistent with a constant spin period further observations over an extended time-base are required in order to ascertain the true spin-evolution of the white dwarf. This may have implications for the various models put forward to explain the energetics and evolution of AR Scorpii.

Neogene Basin Evolution Along the Northern Flank of the Papuan Peninsula, Goodenough Bay, Eastern Papua New Guinea

NASA Astrophysics Data System (ADS)

Horton, B. K.; Gillis, R. J.; Mann, P.

2009-12-01

Although large-magnitude extension in the Woodlark Rift of eastern Papua New Guinea (PNG) and the D’Entrecasteaux Islands has been addressed through previous research on the late Cenozoic structure and cooling history of metamorphic domes, few studies have evaluated the exhumational record contained within adjacent sedimentary basins. Onshore exposures of Neogene basin fill in PNG along the northern flank of the Papuan peninsula (east of the Dayman metamorphic dome and west-southwest of the domes of the D’Entrecasteaux Islands) provide a record of basin evolution prior to and during growth of the active spreading center that defines the boundary between the Australian plate and Woodlark microplate. Along the northern margin of the Papuan peninsula, a collection of lithofacies associations consisting of sandstone and subordinate conglomerate and mudstone represent deposition in bottomset, foreset, and topset subenvironments in a series of marine Gilbert-type deltas. Internal angular unconformities within the basin-fill succession indicate slope instability likely related to syndepositional deformation. This deformation is attributed to principally down-to-the north motion along extensional and strike-slip structures bordering the northern margin of Papuan peninsula, notably the ESE-striking Goodenough fault zone. Small-scale folding is interpreted as the product of late Miocene to Quaternary fault-related folding in an extensional setting, although we cannot rule out possible contraction coeval with significant collision-related shortening on the southern flank of the Papuan peninsula within the south-directed Papuan fold-thrust belt. Differences in sandstone petrographic results for the northern margin of the Papuan peninsula and the smaller Vogel peninsula suggest a multiphase history of basin evolution, with early Neogene subsidence of uncertain origin and late Neogene subsidence linked to regional extension. The timing of basin evolution will be assessed through pending chronological analyses based on marine microfossils and 40Ar/39Ar geochronology. These results will define the timing of basin evolution and related exhumation, allowing direct comparison with the structural record of cooling in metamorphic domes of the region.

SUNSPOT ROTATION AS A DRIVER OF MAJOR SOLAR ERUPTIONS IN THE NOAA ACTIVE REGION 12158

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vemareddy, P.; Ravindra, B.; Cheng, X., E-mail: vemareddy@iiap.res.in

We studied the development conditions of sigmoid structure under the influence of the magnetic non-potential characteristics of a rotating sunspot in the active region (AR) 12158. Vector magnetic field measurements from the Helioseismic Magnetic Imager and coronal EUV observations from the Atmospheric Imaging Assembly reveal that the erupting inverse-S sigmoid had roots at the location of the rotating sunspot. The sunspot rotates at a rate of 0°–5° h{sup −1} with increasing trend in the first half followed by a decrease. The time evolution of many non-potential parameters had a good correspondence with the sunspot rotation. The evolution of the ARmore » magnetic structure is approximated by a time series of force-free equilibria. The non-linear force-free field magnetic structure around the sunspot manifests the observed sigmoid structure. Field lines from the sunspot periphery constitute the body of the sigmoid and those from the interior overlie the sigmoid, similar to a flux rope structure. While the sunspot was rotating, two major coronal mass ejection eruptions occurred in the AR. During the first (second) event, the coronal current concentrations were enhanced (degraded), consistent with the photospheric net vertical current; however, magnetic energy was released during both cases. The analysis results suggest that the magnetic connections of the sigmoid are driven by the slow motion of sunspot rotation, which transforms to a highly twisted flux rope structure in a dynamical scenario. Exceeding the critical twist in the flux rope probably leads to the loss of equilibrium, thus triggering the onset of the two eruptions.« less

Hydrogen production by a thermophilic blue-green alga Mastigocladus laminosus

NASA Astrophysics Data System (ADS)

Miura, Y.; Yokoyama, H.; Miyamoto, K.; Okazaki, M.; Komemushi, S.

Light-driven hydrogen evolution by a thermophilic blue-green alga, Mastigocladus laminosus, was demonstrated and characterized under nitrogen-starved conditions. Air-grown cultures of this alga evolved hydrogen under Ar/CO2 at rates up to 2.2 ml/mg chl/hr. The optimum temperature and pH for the hydrogen evolution were 44-49 C and pH 7.0-7.5, respectively. Evolution in light was depressed by N2 gas and inhibited by salicylaldoxime or 2,4-dinitrophenol, indicating that nitrogenase was mainly responsible for the hydrogen evolution. The evolution rate was improved by adding carbon monoxide and acetylene to the gas phase of Ar/CO2. In addition, photobiological production of hydrogen (biophotolysis) by various blue-green algae is briefly reviewed and discussed.

Evolution of seafloor spreading rate based on Ar-40 degassing history

NASA Astrophysics Data System (ADS)

Tajika, Eiichi; Matsui, Takafumi

1993-05-01

A new degassing model of Ar-40 coupled with thermal evolution of the mantle is constructed to constrain the temporal variation of seafloor spreading rate. In this model, we take into account the effects of elemental partition and solubility during melt generation and bubble formation, and changes in both seafloor spreading rate and melt generation depth in the mantle. It is suggested that the seafloor spreading rate would have been almost the same as that of today over the history of the earth in order to explain the present amount of Ar-40 in the atmosphere. This result may also imply the mild degassing history of volatiles from the mantle.

Surface ripple evolution by argon ion irradiation in polymers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goyal, Meetika; Aggarwal, Sanjeev, E-mail: write2sa@gmail.com; Sharma, Annu

In this report, an attempt has been made to investigate the morphological evolution of nanoscale surface ripples on aliphatic (polypropylene, PP) and aromatic (polyethylene terephthalate, PET) polymeric substrates irradiated with 50 keV Ar{sup +} ions. The specimens were sputtered at off normal incidence of 30° with 5 × 10{sup 16} Ar{sup +} cm{sup −2}. The topographical features and structural behavior of the specimens were studied using Atomic Force Microscopy (AFM) and UV-Visible spectroscopy techniques, respectively. The Stopping and Range of Ions in Matter simulations were performed to calculate sputtering yield of irradiated PP and PET polymers. Sputtering yield of carbon atoms has beenmore » found to be smaller for PP (0.40) as compared to PET (0.73), which is attributed to the different structures of two polymers. AFM analysis demonstrates the evolution of ripple like features with amplitude (2.50 nm) and wavelength (690 nm) on PET while that of lower amplitude (1.50 nm) and higher wavelength (980 nm) on PP specimen. The disorder parameter (Urbach energy) has been found to increase significantly from 0.30 eV to 1.67 eV in case of PP as compared to a lesser increase from 0.35 eV to 0.72 eV in case of PET as revealed by UV-Visible characterization. A mutual correlation between ion beam sputtering induced topographical variations with that of enhancement in the disorder parameter of the specimens has been discussed.« less

Late Paleozoic deformation and exhumation in the Sierras Pampeanas (Argentina): 40Ar/39Ar-feldspar dating constraints

NASA Astrophysics Data System (ADS)

Löbens, Stefan; Oriolo, Sebastián; Benowitz, Jeff; Wemmer, Klaus; Layer, Paul; Siegesmund, Siegfried

2017-09-01

Systematic 40Ar/39Ar feldspar data obtained from the Sierras Pampeanas are presented, filling the gap between available high- (> 300 °C) and low-temperature (< 150 °C) thermochronological data. Results show Silurian-Devonian exhumation related to the late stages of the Famatinian/Ocloyic Orogeny for the Sierra de Pocho and the Sierra de Pie de Palo regions, whereas the Sierras de San Luis and the Sierra de Comechingones regions record exhumation during the Carboniferous. Comparison between new and available data points to a Carboniferous tectonic event in the Sierras Pampeanas, which represents a key period to constrain the early evolution of the proto-Andean margin of Gondwana. This event was probably transtensional and played a major role during the evolution of the Paganzo Basin as well as during the emplacement of alkaline magmatism in the retroarc.

Evolution of nanodot morphology on polycarbonate (PC) surfaces by 40 keV Ar{sup +}

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goyal, Meetika, E-mail: meetika89@gmail.com; Chawla, Mahak; Gupta, Divya

In the present paper we have discussed the effect of 40 keV Ar{sup +} ions irradiation on nanoscale surface morphology of Polycarbonate (PC) substrate. Specimens were sputtered at off normal incidences of 30°, 40° and 50° with the fluence of 1 × 10{sup 16} Ar{sup +}cm{sup −2}. The topographical behaviour of specimens was studied by using Atomic Force Microscopy (AFM) technique. AFM study demonstrates the evolution of nano dot morphology on PC specimens on irradiating with 1 × 10{sup 16} Ar{sup +}cm{sup −2}. Average size of dots varied from 37-95 nm in this specified range of incidence while density of dotsmore » varied from 0.17-3.0 × 107 dotscm{sup −2}. Such variations in morphological features have been supported by estimation of ion range and sputtering yield through SRIM simulations.« less

Lunar initial Nd-143/Nd-144 - Differential evolution of the lunar crust and mantle

NASA Technical Reports Server (NTRS)

Lugmair, G. W.; Marti, K.

1978-01-01

The Sm-Nd evolution of Apollo 15 green glass is discussed. The ICE age (intercept with chondritic evolution) of 3.8 + or - 0.4 eons overlaps the range of reported (Ar-39)-(Ar-40) ages and implies a distinct source region for green glass, characterized by very low and unfractionated REE abundances. Evidence is presented that LINd (lunar initial Nd) is compatible with a 'chondritic'-type Nd isotopic evolution as observed in the Juvinas meteorite. This normalization is used to study the Sm-Nd system of various lunar rock types. The results obtained from a limited number of rocks clearly indicate differential Sm-Nd evolution for the lunar crust and mantle. High-Ti basalts returned by the Apollo 11 and 17 missions were derived from distinct source regions. The Nd-143 evolution in KREEP requires a source region which is clearly distinct from any mantle reservoir.

Characterization of ultrafast laser-ablation plasma plumes at various Ar ambient pressures

DOE PAGES

Diwakar, P. K.; Harilal, S. S.; Phillips, M. C.; ...

2015-07-30

Expansion dynamics and internal plume structures of fs laser ablated brass plasma in Ar at various pressure levels ranging from vacuum to atmospheric were studied using multitude of diagnostic tools including time resolved and time integrated 2-dimensional imaging, optical time of flight measurements and visible emission spectroscopy. Temporal evolution of excited Cu and Zn species in the plume were imaged using band pass interference filters and compared its hydrodynamic expansion features with spectrally integrated images of the plume. 2D imaging coupled with monochromatic line selection showed several interesting features at various pressure levels which include velocity differences among the plumemore » species, emission intensity distribution, plasma temperature, electron density etc. Plume confinement, enhanced signal intensity, and dual peak structures in time-of-flight profiles were observed at intermediate pressure range of ~10 Torr. Optimum signal to background ratio was also observed in this pressure range. As a result, possible mechanisms for observed changes in plume shape, optical emission intensity and dual peak structures in time-of-flight profiles were discussed.« less

A statistical approach to develop a detailed soot growth model using PAH characteristics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Raj, Abhijeet; Celnik, Matthew; Shirley, Raphael

A detailed PAH growth model is developed, which is solved using a kinetic Monte Carlo algorithm. The model describes the structure and growth of planar PAH molecules, and is referred to as the kinetic Monte Carlo-aromatic site (KMC-ARS) model. A detailed PAH growth mechanism based on reactions at radical sites available in the literature, and additional reactions obtained from quantum chemistry calculations are used to model the PAH growth processes. New rates for the reactions involved in the cyclodehydrogenation process for the formation of 6-member rings on PAHs are calculated in this work based on density functional theory simulations. Themore » KMC-ARS model is validated by comparing experimentally observed ensembles on PAHs with the computed ensembles for a C{sub 2}H{sub 2} and a C{sub 6}H{sub 6} flame at different heights above the burner. The motivation for this model is the development of a detailed soot particle population balance model which describes the evolution of an ensemble of soot particles based on their PAH structure. However, at present incorporating such a detailed model into a population balance is computationally unfeasible. Therefore, a simpler model referred to as the site-counting model has been developed, which replaces the structural information of the PAH molecules by their functional groups augmented with statistical closure expressions. This closure is obtained from the KMC-ARS model, which is used to develop correlations and statistics in different flame environments which describe such PAH structural information. These correlations and statistics are implemented in the site-counting model, and results from the site-counting model and the KMC-ARS model are in good agreement. Additionally the effect of steric hindrance in large PAH structures is investigated and correlations for sites unavailable for reaction are presented. (author)« less

An Analysis of Coordinated Observations from NOAA’s Ronald H. Brown Ship and G-IV Aircraft in a Landfalling Atmospheric River over the North Pacific during CalWater-2015

DOE Office of Scientific and Technical Information (OSTI.GOV)

Neiman, Paul J.; Gaggini, Natalie; Fairall, Christopher W.

Using a diverse suite of mobile observing platforms deployed on NOAA’s Ronald H. Brown (RHB) research vessel and G-IV research aircraft during the CalWater-2015 field campaign, this study describes the structure and evolution of a long-lived atmospheric river (AR) modulated by six frontal waves over the northeastern Pacific on 20-25 January 2015. Satellite observations and reanalysis diagnostics provided synoptic-scale context, illustrating the warm, moist southwesterly airstream within the quasi-stationary AR situated between an upper-level trough and ridge. The AR remained offshore of the U.S. West Coast but made landfall across British Columbia where heavy precipitation and high melting levels occurred,more » resulting in flooding. Forty-seven rawinsondes launched from the RHB provided a comprehensive thermodynamic and kinematic depiction of the AR, including an upward intrusion of strong water-vapor transport in the low-level moist southwesterly flow during the passage of frontal waves 2 through 6. A collocated 1290-MHz wind profiler showed an abrupt frontal transition from southwesterly to northerly flow below 1 km MSL coinciding with the tail-end of AR conditions. Shipborne radar and disdrometer observations in the AR uniquely captured key microphysical characteristics of shallow warm rain, convection, and deep mixed-phase precipitation. Continuous and novel observations of sea-surface fluxes documented persistent ocean-surface evaporation into the AR and sensible-heat transfer from the AR into the ocean. The G-IV aircraft coordinated with the RHB and flew directly over the ship. Dropsonde and radar spatial analyses complemented the temporal depictions of the AR from the RHB. The AR characteristics varied, depending on the location of the cross section through the frontal waves.« less

Gas-phase evolution of Ar/H2O and Ar/CH4 dielectric barrier discharge plasmas

NASA Astrophysics Data System (ADS)

Barni, Ruggero; Riccardi, Claudia

2018-04-01

We present some experimental results of an investigation aimed to hydrogen production with atmospheric pressure plasmas, based on the use of dielectric barrier discharges, fed with a high-voltage alternating signal at frequency 30-50 kHz, in mixtures of methane or water vapor diluted in argon. The plasma gas-phase of the discharge was investigated by means of optical and electrical diagnostics. The emission spectra of the discharges was measured with a wide band spectrometer and a photosensor module, based on a photomultiplier tube. A Rogowski coil allowed to measure the electric current flowing into the circuit and a high voltage probe was employed for evaluating the voltage at the electrodes. The analysis of the signals of voltage and current shows the presence of microdischarges between the electrodes in two alternating phases during the period of oscillation of the applied voltage. The hydrogen concentration in the gaseous mixture was measured too. Besides this experimental campaign, we present also results from a numerical modeling of chemical kinetics in the gas-phase of Ar/H2O and Ar/CH4 plasmas. The simulations were conducted under conditions of single discharge to study the evolution of the system and of fixed frequency repeated discharging. In particular in Ar/H2O mixtures we could study the evolution from early atomic dissociation in the discharge, to longer time scales, when chemical reactions take place producing an increase of the density of species such as OH, H2O2 and subsequently of H and H2. The results of numerical simulations provide some insights into the evolution happening in the plasma gas-phase during the hydrogen reforming process.

Recycling argon through metamorphic reactions: The record in symplectites

NASA Astrophysics Data System (ADS)

McDonald, Christopher S.; Regis, Daniele; Warren, Clare J.; Kelley, Simon P.; Sherlock, Sarah C.

2018-02-01

The 40Ar/39Ar ages of metamorphic micas that crystallized at high temperatures are commonly interpreted as cooling ages, with grains considered to have lost 40Ar via thermally-driven diffusion into the grain boundary network. Recently reported laser-ablation data suggest that the spatial distribution of Ar in metamorphic micas does not always conform to the patterns predicted by diffusion theory and that despite high metamorphic temperatures, argon was not removed efficiently from the local system during metamorphic evolution. In the Western Gneiss Region (WGR), Norway, felsic gneisses preserve microtextural evidence for the breakdown of phengite to biotite and plagioclase symplectites during near isothermal decompression from c. 20-25 to c. 8-12 kbar at 700 °C. These samples provide an ideal natural laboratory to assess whether the complete replacement of one K-bearing mineral by another at high temperatures completely 'resets' the Ar clock, or whether there is some inheritance of 40Ar in the neocrystallized phase. The timing of the high-temperature portion of the WGR metamorphic cycle has been well constrained in previous studies. However, the timing of cooling following the overprint is still much debated. In-situ laser ablation spot dating in phengite, biotite-plagioclase symplectites and coarser, texturally later biotite yielded 40Ar/39Ar ages that span much of the metamorphic cycle. Together these data show that despite residence at temperatures of 700 °C, Ar is not completely removed by diffusive loss or during metamorphic recrystallization. Instead, Ar released during phengite breakdown appears to be partially reincorporated into the newly crystallizing biotite and plagioclase (or is trapped in fluid inclusions in those phases) within a close system. Our data show that the microtextural and petrographic evolution of the sample being dated provides a critical framework in which local 40Ar recycling can be tracked, thus potentially allowing 40Ar/39Ar dates to be linked more accurately to metamorphic history.

Structural Changes Due to Antagonist Binding in Ligand Binding Pocket of Androgen Receptor Elucidated Through Molecular Dynamics Simulations.

PubMed

Sakkiah, Sugunadevi; Kusko, Rebecca; Pan, Bohu; Guo, Wenjing; Ge, Weigong; Tong, Weida; Hong, Huixiao

2018-01-01

When a small molecule binds to the androgen receptor (AR), a conformational change can occur which impacts subsequent binding of co-regulator proteins and DNA. In order to accurately study this mechanism, the scientific community needs a crystal structure of the Wild type AR (WT-AR) ligand binding domain, bound with antagonist. To address this open need, we leveraged molecular docking and molecular dynamics (MD) simulations to construct a structure of the WT-AR ligand binding domain bound with antagonist bicalutamide. The structure of mutant AR (Mut-AR) bound with this same antagonist informed this study. After molecular docking analysis pinpointed the suitable binding orientation of a ligand in AR, the model was further optimized through 1 μs of MD simulations. Using this approach, three molecular systems were studied: (1) WT-AR bound with agonist R1881, (2) WT-AR bound with antagonist bicalutamide, and (3) Mut-AR bound with bicalutamide. Our structures were very similar to the experimentally determined structures of both WT-AR with R1881 and Mut-AR with bicalutamide, demonstrating the trustworthiness of this approach. In our model, when WT-AR is bound with bicalutamide, Val716/Lys720/Gln733, or Met734/Gln738/Glu897 move and thus disturb the positive and negative charge clumps of the AF2 site. This disruption of the AF2 site is key for understanding the impact of antagonist binding on subsequent co-regulator binding. In conclusion, the antagonist induced structural changes in WT-AR detailed in this study will enable further AR research and will facilitate AR targeting drug discovery.

Molecular Analysis of Arthrobacter Myovirus vB_ArtM-ArV1: We Blame It on the Tail

PubMed Central

Šimoliūnas, Eugenijus; Truncaitė, Lidija; Zajančkauskaitė, Aurelija; Nainys, Juozas; Kaupinis, Algirdas; Valius, Mindaugas; Meškys, Rolandas

2017-01-01

ABSTRACT This is the first report on a myophage that infects Arthrobacter. A novel virus, vB_ArtM-ArV1 (ArV1), was isolated from soil using Arthrobacter sp. strain 68b for phage propagation. Transmission electron microscopy showed its resemblance to members of the family Myoviridae: ArV1 has an isometric head (∼74 nm in diameter) and a contractile, nonflexible tail (∼192 nm). Phylogenetic and comparative sequence analyses, however, revealed that ArV1 has more genes in common with phages from the family Siphoviridae than it does with any myovirus characterized to date. The genome of ArV1 is a linear, circularly permuted, double-stranded DNA molecule (71,200 bp) with a GC content of 61.6%. The genome includes 101 open reading frames (ORFs) yet contains no tRNA genes. More than 50% of ArV1 genes encode unique proteins that either have no reliable identity to database entries or have homologues only in Arthrobacter phages, both sipho- and myoviruses. Using bioinformatics approaches, 13 ArV1 structural genes were identified, including those coding for head, tail, tail fiber, and baseplate proteins. A further 6 ArV1 ORFs were annotated as encoding putative structural proteins based on the results of proteomic analysis. Phylogenetic analysis based on the alignment of four conserved virion proteins revealed that Arthrobacter myophages form a discrete clade that seems to occupy a position somewhat intermediate between myo- and siphoviruses. Thus, the data presented here will help to advance our understanding of genetic diversity and evolution of phages that constitute the order Caudovirales. IMPORTANCE Bacteriophages, which likely originated in the early Precambrian Era, represent the most numerous population on the planet. Approximately 95% of known phages are tailed viruses that comprise three families: Podoviridae (with short tails), Siphoviridae (with long noncontractile tails), and Myoviridae (with contractile tails). Based on the current hypothesis, myophages, which may have evolved from siphophages, are thought to have first emerged among Gram-negative bacteria, whereas they emerged only later among Gram-positive bacteria. The results of the molecular characterization of myophage vB_ArtM-ArV1 presented here conform to the aforementioned hypothesis, since, at a glance, bacteriophage vB_ArtM-ArV1 appears to be a siphovirus that possesses a seemingly functional contractile tail. Our work demonstrates that such “chimeric” myophages are of cosmopolitan nature and are likely characteristic of the ecologically important soil bacterial genus Arthrobacter. PMID:28122988

The structure of the Temsamane fold-and-thrust stack (eastern Rif, Morocco): Evolution of a transpressional orogenic wedge

NASA Astrophysics Data System (ADS)

Jabaloy-Sánchez, Antonio; Azdimousa, Ali; Booth-Rea, Guillermo; Asebriy, Lahcen; Vázquez-Vílchez, Mercedes; Martínez-Martínez, José Miguel; Gabites, Janet

2015-11-01

The structure of the Temsamane fold-and-thrust stack corresponds to four units limited by anastomosing ductile shear zones cutting a trend of south verging recumbent folds. This ductile stack was formed in an inclined left-handed transpressional zone at the North African paleomargin during Chattian to Langhian times producing two main deformational events. The first event (Dp) produced a Sp/Lp planar linear fabric generated in a non-coaxial deformation with a top-to-the-WSW sense of movement and was associated to metamorphic P-T conditions varying from late diagenesis in the southernmost Temsamane outcrops to epizone in the north. According to the 40Ar/39Ar ages, this deformation occurred at Chattian-Aquitanian times. The second deformational event (Dc event) generated ENE-WSW trending folds with SSE vergence and a set of anastomosing shear zones with Sm/Lm planar linear fabric. The latter units were generated at around 15 Ma (Langhian), and indicate a strong localization of the simple shear component of the transpression. Moreover, this orientation is compatible with the kinematics of the Temsamane detachment, which can explain most of the uplift of the Temsamane rocks from the middle to the uppermost crust. The described evolution indicates that collision between the western Mediterranean terranes and the North African paleomargin and the formation of the Rifean orogenic wedge occurred at Chattian to Langhian times.

Mechanosensation is evolutionarily tuned to locomotor mechanics

PubMed Central

Aiello, Brett R.; Westneat, Mark W.; Hale, Melina E.

2017-01-01

The biomechanics of animal limbs has evolved to meet the functional demands for movement associated with different behaviors and environments. Effective movement relies not only on limb mechanics but also on appropriate mechanosensory feedback. By comparing sensory ability and mechanics within a phylogenetic framework, we show that peripheral mechanosensation has evolved with limb biomechanics, evolutionarily tuning the neuromechanical system to its functional demands. We examined sensory physiology and mechanics of the pectoral fins, forelimb homologs, in the fish family Labridae. Labrid fishes exhibit extraordinary morphological and behavioral diversity and use pectoral fin-based propulsion with fins ranging in shape from high aspect ratio (AR) wing-like fins to low AR paddle-like fins. Phylogenetic character analysis demonstrates that high AR fins evolved independently multiple times in this group. Four pairs of species were examined; each included a plesiomorphic low AR and a high AR species. Within each species pair, the high AR species demonstrated significantly stiffer fin rays in comparison with the low AR species. Afferent sensory nerve activity was recorded during fin ray bending. In all cases, afferents of stiffer fins were more sensitive at lower displacement amplitudes, demonstrating mechanosensory tuning to fin mechanics and a consistent pattern of correlated evolution. We suggest that these data provide a clear example of parallel evolution in a complex neuromechanical system, with a strong link between multiple phenotypic characters: pectoral fin shape, swimming behavior, fin ray stiffness, and mechanosensory sensitivity. PMID:28396411

Large-scale and Long-duration Simulation of a Multi-stage Eruptive Solar Event

NASA Astrophysics Data System (ADS)

Jiang, chaowei; Hu, Qiang; Wu, S. T.

2015-04-01

We employ a data-driven 3D MHD active region evolution model by using the Conservation Element and Solution Element (CESE) numerical method. This newly developed model retains the full MHD effects, allowing time-dependent boundary conditions and time evolution studies. The time-dependent simulation is driven by measured vector magnetograms and the method of MHD characteristics on the bottom boundary. We have applied the model to investigate the coronal magnetic field evolution of AR11283 which was characterized by a pre-existing sigmoid structure in the core region and multiple eruptions, both in relatively small and large scales. We have succeeded in producing the core magnetic field structure and the subsequent eruptions of flux-rope structures (see https://dl.dropboxusercontent.com/u/96898685/large.mp4 for an animation) as the measured vector magnetograms on the bottom boundary evolve in time with constant flux emergence. The whole process, lasting for about an hour in real time, compares well with the corresponding SDO/AIA and coronagraph imaging observations. From these results, we show the capability of the model, largely data-driven, that is able to simulate complex, topological, and highly dynamic active region evolutions. (We acknowledge partial support of NSF grants AGS 1153323 and AGS 1062050, and data support from SDO/HMI and AIA teams).

Identification of a new androgen receptor (AR) co-regulator BUD31 and related peptides to suppress wild-type and mutated AR-mediated prostate cancer growth via peptide screening and X-ray structure analysis.

PubMed

Hsu, Cheng-Lung; Liu, Jai-Shin; Wu, Po-Long; Guan, Hong-Hsiang; Chen, Yuh-Ling; Lin, An-Chi; Ting, Huei-Ju; Pang, See-Tong; Yeh, Shauh-Der; Ma, Wen-Lung; Chen, Chung-Jung; Wu, Wen-Guey; Chang, Chawnshang

2014-12-01

Treatment with individual anti-androgens is associated with the development of hot-spot mutations in the androgen receptor (AR). Here, we found that anti-androgens-mt-ARs have similar binary structure to the 5α-dihydrotestosterone-wt-AR. Phage display revealed that these ARs bound to similar peptides, including BUD31, containing an Fxx(F/H/L/W/Y)Y motif cluster with Tyr in the +5 position. Structural analyses of the AR-LBD-BUD31 complex revealed formation of an extra hydrogen bond between the Tyr+5 residue of the peptide and the AR. Functional studies showed that BUD31-related peptides suppressed AR transactivation, interrupted AR N-C interaction, and suppressed AR-mediated cell growth. Combination of peptide screening and X-ray structure analysis may serve as a new strategy for developing anti-ARs that simultaneously suppress both wt and mutated AR function. Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

Fuzzy Control/Space Station automation

NASA Technical Reports Server (NTRS)

Gersh, Mark

1990-01-01

Viewgraphs on fuzzy control/space station automation are presented. Topics covered include: Space Station Freedom (SSF); SSF evolution; factors pointing to automation & robotics (A&R); astronaut office inputs concerning A&R; flight system automation and ground operations applications; transition definition program; and advanced automation software tools.

High Spatial Resolution 40Ar/39Ar Geochronology of Lunar Impact Melt Rocks

NASA Astrophysics Data System (ADS)

Mercer, Cameron Mark

Impact cratering has played a key role in the evolution of the solid surfaces of Solar System bodies. While much of Earth’s impact record has been erased, its Moon preserves an extensive history of bombardment. Quantifying the timing of lunar impact events is crucial to understanding how impacts have shaped the evolution of early Earth, and provides the basis for estimating the ages of other cratered surfaces in the Solar System. Many lunar impact melt rocks are complex mixtures of glassy and crystalline “melt” materials and inherited clasts of pre-impact minerals and rocks. If analyzed in bulk, these samples can yield complicated incremental release 40Ar/39Ar spectra, making it challenging to uniquely interpret impact ages. Here, I have used a combination of high-spatial resolution 40Ar/39Ar geochronology and thermal-kinetic modeling to gain new insights into the impact histories recorded by such lunar samples. To compare my data to those of previous studies, I developed a software tool to account for differences in the decay, isotopic, and monitor age parameters used for different published 40Ar/39Ar datasets. Using an ultraviolet laser ablation microprobe (UVLAMP) system I selectively dated melt and clast components of impact melt rocks collected during the Apollo 16 and 17 missions. UVLAMP 40Ar/39Ar data for samples 77135, 60315, 61015, and 63355 show evidence of open-system behavior, and provide new insights into how to interpret some complexities of published incremental heating 40Ar/39Ar spectra. Samples 77115, 63525, 63549, and 65015 have relatively simple thermal histories, and UVLAMP 40Ar/39Ar data for the melt components of these rocks indicate the timing of impact events—spanning hundreds of millions of years—that influenced the Apollo 16 and 17 sites. My modeling and UVLAMP 40Ar/39Ar data for sample 73217 indicate that some impact melt rocks can quantitatively retain evidence for multiple melt-producing impact events, and imply that such polygenetic rocks should be regarded as high-value sampling opportunities during future exploration missions to cratered planetary surfaces. Collectively, my results complement previous incremental heating 40Ar/39Ar studies, and support interpretations that the Moon experienced a prolonged period of heavy bombardment early in its history.

The Global Challenge of Antimicrobial Resistance: Insights from Economic Analysis

PubMed Central

Eggleston, Karen; Zhang, Ruifang; Zeckhauser, Richard J.

2010-01-01

The prevalence of antimicrobial resistance (AR) limits the therapeutic options for treatment of infections, and increases the social benefit from disease prevention. Like an environmental resource, antimicrobials require stewardship. The effectiveness of an antimicrobial agent is a global public good. We argue for greater use of economic analysis as an input to policy discussion about AR, including for understanding the incentives underlying health behaviors that spawn AR, and to supplement other methods of tracing the evolution of AR internationally. We also discuss integrating antimicrobial stewardship into global health governance. PMID:20948953

Accelerated Evolution in Distinctive Species Reveals Candidate Elements for Clinically Relevant Traits, Including Mutation and Cancer Resistance.

PubMed

Ferris, Elliott; Abegglen, Lisa M; Schiffman, Joshua D; Gregg, Christopher

2018-03-06

The identity of most functional elements in the mammalian genome and the phenotypes they impact are unclear. Here, we perform a genome-wide comparative analysis of patterns of accelerated evolution in species with highly distinctive traits to discover candidate functional elements for clinically important phenotypes. We identify accelerated regions (ARs) in the elephant, hibernating bat, orca, dolphin, naked mole rat, and thirteen-lined ground squirrel lineages in mammalian conserved regions, uncovering ∼33,000 elements that bind hundreds of different regulatory proteins in humans and mice. ARs in the elephant, the largest land mammal, are uniquely enriched near elephant DNA damage response genes. The genomic hotspot for elephant ARs is the E3 ligase subunit of the Fanconi anemia complex, a master regulator of DNA repair. Additionally, ARs in the six species are associated with specific human clinical phenotypes that have apparent concordance with overt traits in each species. Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved.

Role of the Prospect Rock Fault in the Exhumation of High Pressure Rocks in North-Central Vermont

NASA Astrophysics Data System (ADS)

Tam, E.; Webb, L. E.; Aiken, C. L.

2017-12-01

The Prospect Rock Fault (PRF) is key to our interpretation of regional deformation and exhumation of blueschist and eclogite-facies rocks in the Tillotson Peak Complex (TPC) during the Taconic Orogeny. The TPC is in the footwall of the PRF in the eastern limb of the Green Mountain Anticlinorium. In the TPC, the dominant foliation is S2 and E-W trending F2 folds parallel L2 lineations, which run orthogonal to regional N-S trending folds associated with the Taconic Orogeny. This structural trend has possible analogies with HP-UHP terranes in Papua New Guinea and China. The PRF itself is folded by F2 folds. Presently, there is a lack of consensus about the structural evolution of the PRF and its role in the exhumation of the TPC, and studies have not reconciled the formation of the E-W folds and lineations to a regional model. Oriented samples and structural data were collected from the footwall of the PRF over several transects. Samples were processed into orthogonal thin sections for microstructural analyses and for 40Ar/39Ar step-heating of white mica. Preliminary results show a range of ages from 458.6 ± 2.0 Ma to 420.0 ± 2.7 Ma. The oldest ages are just slightly younger, yet concordant, with published and new 40Ar/39Ar ages from the TPC. The dominant foliation in the PRF samples, S2, is defined in thin section by mica and quartz microlithons, and oriented mica grains. S1 is only locally preserved in some mica domains and albite/garnet inclusion trails. S3 appears as crenulations of S2, with no significant new mineral crystallization. In the field, L2 lineations are defined by mineral and quartz rods, and L3 lineations are defined as intersection lineations on S2 surfaces. The relationships between ages and microstructures are consistent younger ages being associated with increased presence of S3 crenulation foliations, which appeared in structurally lower areas. Samples with older ages display dominant S2 foliations and lack S3 crenulations, and were sourced from structurally higher areas. Our results suggest the PRF played a role in exhumation of the TPC and ages obtained are closely aligned with deformation ages constrained from 40Ar/39Ar dating in southern Quebec for the Taconic D2 and Salinian D3 deformation. These dates may aid to further correlation tectonostratographic models between southern Quebec and northern Vermont.

LIGHT BRIDGE IN A DEVELOPING ACTIVE REGION. I. OBSERVATION OF LIGHT BRIDGE AND ITS DYNAMIC ACTIVITY PHENOMENA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Toriumi, Shin; Katsukawa, Yukio; Cheung, Mark C. M., E-mail: shin.toriumi@nao.ac.jp

Light bridges, the bright structures that divide the umbra of sunspots and pores into smaller pieces, are known to produce a wide variety of activity events in solar active regions (ARs). It is also known that the light bridges appear in the assembling process of nascent sunspots. The ultimate goal of this series of papers is to reveal the nature of light bridges in developing ARs and the occurrence of activity events associated with the light bridge structures from both observational and numerical approaches. In this first paper, exploiting the observational data obtained by Hinode, the Interface Region Imaging Spectrograph, andmore » the Solar Dynamics Observatory, we investigate the detailed structure of the light bridge in NOAA AR 11974 and its dynamic activity phenomena. As a result, we find that the light bridge has a weak, horizontal magnetic field, which is transported from the interior by a large-scale convective upflow and is surrounded by strong, vertical fields of adjacent pores. In the chromosphere above the bridge, a transient brightening occurs repeatedly and intermittently, followed by a recurrent dark surge ejection into higher altitudes. Our analysis indicates that the brightening is the plasma heating due to magnetic reconnection at lower altitudes, while the dark surge is the cool, dense plasma ejected from the reconnection region. From the observational results, we conclude that the dynamic activity observed in a light bridge structure such as chromospheric brightenings and dark surge ejections are driven by magnetoconvective evolution within the light bridge and its interaction with the surrounding magnetic fields.« less

Ion mass spectrometry investigations of the discharge during reactive high power pulsed and direct current magnetron sputtering of carbon in Ar and Ar/N{sub 2}

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schmidt, S.; Greczynski, G.; Jensen, J.

2012-07-01

Ion mass spectrometry was used to investigate discharges formed during high power impulse magnetron sputtering (HiPIMS) and direct current magnetron sputtering (DCMS) of a graphite target in Ar and Ar/N{sub 2} ambient. Ion energy distribution functions (IEDFs) were recorded in time-averaged and time-resolved mode for Ar{sup +}, C{sup +}, N{sub 2}{sup +}, N{sup +}, and C{sub x}N{sub y}{sup +} ions. An increase of N{sub 2} in the sputter gas (keeping the deposition pressure, pulse width, pulse frequency, and pulse energy constant) results for the HiPIMS discharge in a significant increase in C{sup +}, N{sup +}, and CN{sup +} ion energies.more » Ar{sup +}, N{sub 2}{sup +}, and C{sub 2}N{sup +} ion energies, in turn, did not considerably vary with the changes in working gas composition. The HiPIMS process showed higher ion energies and fluxes, particularly for C{sup +} ions, compared to DCMS. The time evolution of the plasma species was analyzed for HiPIMS and revealed the sequential arrival of working gas ions, ions ejected from the target, and later during the pulse-on time molecular ions, in particular CN{sup +} and C{sub 2}N{sup +}. The formation of fullerene-like structured CN{sub x} thin films for both modes of magnetron sputtering is explained by ion mass-spectrometry results and demonstrated by transmission electron microscopy as well as diffraction.« less

Investigation on demagnetization of Nd2Fe14B permanent magnets induced by irradiation

NASA Astrophysics Data System (ADS)

Li, Zhefu; Jia, Yanyan; Liu, Renduo; Xu, Yuhai; Wang, Guanghong; Xia, Xiaobin

2017-12-01

Nd2Fe14B is an important component of insertion devices, which are used in synchrotron radiation sources, and could be demagnetized by irradiation. In the present study, the Monte Carlo code FLUKA was used to analyze the irradiation field of Nd2Fe14B, and it was confirmed that the main demagnetization particle was neutron. Nd2Fe14B permanent magnet samples were irradiated by Ar ions at different doses to simulate neutron irradiation damage. The hysteresis loops were measured using a vibrating sample magnetometer, and the microstructure evolutions were characterized by transmission electron microscopy. Moreover, the relationship between them was discussed. The results indicate that the decrease in saturated magnetization is caused by the changes in microstructure. The evolution of single crystals into an amorphous structure is the reason for the demagnetization phenomenon of Nd2Fe14B permanent magnets when considering its microscopic structure.

Fast discharge in a spherical cavity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Antsiferov, P. S., E-mail: Ants@isan.troitsk.ru; Dorokhin, L. A.

2014-04-15

The work is devoted to the study of the plasma, created by a fast discharge in a spherical cavity. The discharge was driven by an inductive storage with plasma erosion opening switch (dI/dt ∼10{sup 12} A/s). The plasma was produced in a spherical cavity (alumina, 11 mm diameter). Xe, Ar, and He at the pressure 80 Pa were used as working gases. The time evolution of the spatial structure and of extreme ultraviolet (EUV) spectra of the discharge plasma was studied by means of micro channel plate detector. The discharges with Xe and Ar resulted in the stable appearance of the spherically shapedmore » plasma with the diameter about 1–3 mm. The plasma emission in the EUV region lasts ∼500 ns. The EUV spectrum of Ar discharge at the moment of maximum of the electron temperature T{sub e} contains the lines of Ar X (ionization potential 478.7 eV), that indicates a value of T{sub e} in the range 50–100 eV. The mechanism of plasma appearance can be the cumulation of the convergent spherical shock wave, generated by fast heat deposition and magnetic pressure in working media near the inner surface of the discharge volume.« less

New Constraints for Tectono-Thermal Alpine Evolution of the Pyrenees: Combining Zircon Fission-Track and (U-Th)/He Analyses with Raman Spectrometry and In-Situ K-Ar Geochronology

NASA Astrophysics Data System (ADS)

Waldner, M.; Bellahsen, N.; Mouthereau, F.; Pik, R.; Bernet, M.; Scaillet, S.; Rosenberg, C.

2017-12-01

The pyrenean range was formed by the convergence of European and Iberian plates following the inversion of the Mesozoic rifting in the north of Pyrenees. In the Axial Zone, the collision caused an antiformal nappe-stacking of tectonic units. Recent studies pointed out the importance of pre-collision structural and thermal inheritance that may play a major role for orogeny such as: 1) Paleozoic Variscan inheritance; 2) Mesozoic rift-related high geothermal gradients, which are maintained during the onset of convergence in the North Pyrenean Zone. From a mineralogical point of view, pre-collision feldspars have been destabilized and influenced the development of alpine phyllonite in brittle-ductile conditions which suggests a weak crustal behavior during the formation of the orogenic wedge. Our aim is to get a better understanding of alpine deformation and exhumation by coupling different thermochronological, geochronological and thermometric methods. We document the thermal evolution of each tectonic unit by using low-temperature thermochronometers (Zircon Fission Tracks, U-Th/He on zircons including laser ablation profiles). Our data on vertical profiles combined to existing dataset on apatite allows to model alpine exhumation across the Axial zone. Structural observations through alpine thrusts coupled to geochronology (in situ K/Ar on phengites), Raman and chlorite-phengite thermo(baro)metry provide new key data to unravel the alpine evolution of the Pyrenees. According to preliminary ZFT results on granite massifs in the central part of Pyrenean Axial zone (near ECORS profile), exhumation ages potentially indicates a migration of exhumation towards the south. Exhumation ages of the northern massifs seems to have preserved the North Pyrenean Cretaceous rift evolution. Further south, the onset of exhumation is as old as Paleocene, which precedes the Eocene ages of the literature. The low burial estimated in the northern massifs may indicate a high thermal gradient. This dataset coupled to the above-cited other methods provide the most exhaustive and detailed image of the thermo-structural evolution of the Axial Zone that enables us to discuss the crustal rheology during collision. This study is part of the Orogen project, a partnership between academy and industry (Total, BRGM, CNRS)

Miocene crustal extension following thrust tectonic in the Lower Sebtides units (internal Rif, Ceuta Peninsula, Spain): Implication for the geodynamic evolution of the Alboran domain

NASA Astrophysics Data System (ADS)

Homonnay, Emmanuelle; Corsini, Michel; Lardeaux, Jean-Marc; Romagny, Adrien; Münch, Philippe; Bosch, Delphine; Cenki-Tok, Bénédicte; Ouazzani-Touhami, Mohamed

2018-01-01

In Western Mediterranean, the Rif belt in Morocco is part of the Gibraltar Arc built during the Tertiary in the framework of Eurasia-Africa convergence. The structural and metamorphic evolution of the internal units of this belt as well as their timing, crucial to constrain the geodynamic evolution of the Alboran Sea, is still largely debated. Our study on the Ceuta Peninsula (Northern Rif) provides new structural, petrological and geochronological data (U-Th-Pb, Ar-Ar), which allow to precise the tectono-metamorphic evolution of the Lower Sebtides metamorphic units with: (1) a syn-metamorphic thrusting event developed under granulite facies conditions (7-10 kbar and 780-820 °C). A major thrust zone, the Ceuta Shear Zone, drove the emplacement of metapelites and peridotitic lenses from the Ceuta Upper Unit over the orthogneisses of the Monte Hacho Lower Unit. This compressional event ended during the Upper Oligocene. (2) an extensional event developed at the boundary between amphibolite and greenschist facies conditions (400-550 °C and 1-3 kbar). During this event, the Ceuta Shear Zone has been reactivated as a normal fault. Normal ductile shear zones contributed to the final exhumation of the metamorphic units during the Early Miocene. We propose that the compressional event is related to the formation of an orogenic wedge located in the upper plate, in a backward position, of the subduction zone driving the geodynamic evolution of the Alboran domain. In this context, the episode of lithospheric thinning could be related to the opening of the Alboran basin in a back-arc position. Furthermore, unlike the previous models proposed for the Rif belt, the tectonic coupling between mantle peridotites and crustal metamorphic rocks occurred in Ceuta Peninsula at a depth of 20-30 km under high temperature conditions, before the extensional event, and thus cannot be related to the back-arc extension. 1, BSE image of monazite. 2, CL image of monazite showing a thin rim zonation. 3, BSE image of zircon. 4, CL image of zircon showing zonation.

Reconstructing the Paleo-Limnologic Evolution of Lake Bonney, Antarctica using Dissolved Noble Gases

NASA Astrophysics Data System (ADS)

Warrier, R. B.; Castro, M.; Hall, C. M.; Kenig, F. P.; Doran, P. T.

2013-12-01

The McMurdo Dry Valleys, situated on the western coast of the Ross Sea are the largest ice-free region in Antarctica. Lake Bonney (LB), located in western Taylor valley, one of the main east-west dry valleys, has two lobes, East Lake Bonney (ELB) and West Lake Bonney (WLB), which are separated by a narrow straight with a ~13 m deep sill. Because the evolution of LB is ultimately controlled by climate and because there are no reliable millennial-scale continental records of climate other than the Taylor Dome ice core in this region of Antarctica, a number of studies have reconstructed the paleolimnologic history of LB using diverse tools to try to reconstruct the history of the lake, and thus, the climate evolution in this area. However, many open questions remain with respect to the paleo-limnologic evolution of LB. To further place constraints on the evolution of LB, we analyzed 23 lake samples collected between 5 and ~40 m depth from both ELB and WLB for He and Ar concentrations as well as isotopic ratios. Preliminary results show that samples present He excesses up to two and three orders of magnitude with respect to air saturated water (ASW) in ELB and WLB, respectively. While He excesses generally increase with depth in WLB suggesting accumulation of 4He over time, a similar correlation with depth is not observed for ELB samples, indicating a more complex evolutionary history in this lobe. Measured R/Ra He isotopic ratios, where Ra is the atmospheric 3He/4He ratio, vary between 0.20-0.61 and 0.16-0.22 for ELB and WLB respectively, and indicate that observed He excesses are predominantly crustal in origin, with a small (<~5%) mantle contribution. In contrast, measured 40Ar/36Ar ratios indicate that Ar concentrations at all depths in ELB are atmospheric in origin while WLB samples below the sill indicate addition of excess 40Ar, likely of radiogenic origin. Preliminary estimates of water residence times based on measured He excesses and crustal production ratios from basement rocks point to maximum water ages of ~5 kyrs and ~500 kyrs for the deep waters of ELB and WLB, respectively. Similarly, a maximum residence time of ~500 kyrs was obtained for bottom waters of WLB assuming a crustal origin for the observed excess 40Ar. These preliminary age results are maximum estimations and assume that all He and Ar excesses are entirely of crustal origin. Our preliminary results indicate that the WLB waters have been isolated from the atmosphere for a much longer period of time than ELB waters and point to a very different evolution of both lobes. In addition, these maximum WLB ages obtained are much younger than previously thought (~1-5 Ma).

Effects of Nonhydrostatic Stress on Structural and Optoelectronic Properties of Methylammonium Lead Bromide Perovskite

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Rong; Cai, Weizhao; Bi, Tiange

We report synchrotron X-ray diffraction, photoconductivity, and photoluminescence investigations of methylammonium-lead-bromide (MAPbBr3) under various stress conditions, supported by density-functional-theory (DFT) calculations. The properties of MAPbBr3 show substantial dependence on the hydrostatic conditions. While nonhydrostatic compression of MAPbBr3 leads to amorphization above 2.4 GPa, under quasi-hydrostatic (Ar) and hydrostatic (He) pressure, the sample remains in crystalline phases. A sequence of phase transitions between two cubic phases and orthorhombic Pnma phase is observed when using Ar, or no pressure-transmitting-medium (PTM). In helium-PTM only transitions between the two cubic structures and a new isostructural phase transition with a large volume collapse to amore » third cubic-phase at 2.7 GPa was observed. The photoluminescence measurements indicate a pressure-induced band gap-narrowing in the cubic phase I, and a blue-shift in the orthorhombic structure. DFT calculations illustrate that the dynamics of the organic molecules and the inorganic lattice, coupled via the N–H···Br hydrogen-bonding interactions, affect the Pb–Br distance and the bandgap evolution under pressure.« less

The Evolution of Quasi-separatrix Layer in Two Solar Eruptive Events

NASA Astrophysics Data System (ADS)

Kang, K. F.; Yan, X. L.; Xu, Z.; Wu, N.; Lin, J.

2017-05-01

Quasi-separatrix layer, also called QSL, is a region where magnetic connectivity changes drastically and mostly well coincides with the location of flare ribbons in observations. The research on the relation between this topological structure and 3-dimensional magnetic reconnection, and solar flares has attracted more and more attention. In this paper, using the theory of QSL we investigate a C5.7 classical two-ribbon solar flare (event 1) which occurred at AR11384 on 2011 December 26 and an M6.5 solar flare (event 2) which occurred at AR12371 on 2015 June 22, respectively. Combining the multi-wavelength data of AIA (Atmospheric Imaging Assembly) and vector magnetogrames of HMI (Helioseismic and Magnetic Imager) onboard SDO (Solar Dynamics Observatory), we extrapolate the coronal magnetic field using the PF (Potential Field) model and NLFFF (Nonlinear Force Free Field) model, and calculate the evolution of the AR (Active Region) magnetic free energy first. Next, we calculate the slgQ maps of Q factor (magnetic squashing factor) at different heights away from solar photosphere with the extrapolation results of PF and NLFFF in order to decide the location of QSL. Then, we investigate the evolution relation between QSL at different heights away from solar photosphere and flaring brightening at the same layers. Finally, we study the multi-wavelength evolution features of the 2 flares. And, we calculate the observational slipping running speeds of event 2 in 304 Å and 335 Å, which are 4.6 km s-1 and 6.3 km s-1, respectively. We find that the location of QSL calculated in chromosphere and corona is in good agreement with the location of flare ribbons at the same height, and the QSL at different layers has almost the same evolutionary behavior in time with the flaring brightening of the corresponding layer, which highlights the role of QSL in the research of 3D magnetic reconnection and solar flare, and we suggest that the flare may be triggered by the QSL reconnection. We also suggest that QSL is very important for us to research the essential connection between 3D magnetic reconnection and 2D magnetic reconnection.

Kinematics and 40Ar/ 39Ar geochronology of the Gaoligong and Chongshan shear systems, western Yunnan, China: Implications for early Oligocene tectonic extrusion of SE Asia

NASA Astrophysics Data System (ADS)

Wang, Yuejun; Fan, Weiming; Zhang, Yanhua; Peng, Touping; Chen, Xinyue; Xu, Yigang

2006-06-01

The Gaoligong and Chongshan shear systems (GLSS and CSSS) in western Yunnan, China, have similar tectonic significance to the Ailaoshan-Red River shear system (ASRRSS) during the Cenozoic tectonic development of the southeastern Tibetan syntaxis. To better understand their kinematics and the Cenozoic tectonic evolution of SE Asia, this paper presents new kinematic and 40Ar/ 39Ar geochronological data for these shear systems. All the structural and microstructural evidence indicate that the GLSS is a dextral strike-slip shear system while the CSSS is a sinistral strike-slip shear system, and both were developed under amphibolite- to greenschist-grade conditions. The 40Ar/ 39Ar dating of synkinematic minerals revealed that the strike-slip shearing on the GLSS and CSSS at least began at ˜ 32 Ma, possibly coeval with the onset of other major shear systems in SE Asia. The late-stage shearing on the GLSS and CSSS is dated at ˜ 27-29 Ma by the biotite 40Ar/ 39Ar ages, consistent with that of the Wang Chao shear zone (WCSZ), but ˜ 10 Ma earlier than that of the ASRRSS. The dextral Gaoligong shear zone within the GLSS may have separated the India plate from the Indochina Block during early Oligocene. Combined with other data in western Yunnan, we propose that the Baoshan/Southern Indochina Block escaped faster southeastward along the CSSS to the east and the GLSS to the west than the Northern Indochina Block along the ASRRSS, accompanying with the obliquely northward motion of the India plate during early Oligocene (28-36 Ma). During 28-17 Ma, the Northern Indochina Block was rotationally extruded along the ASRRSS relative to the South China Block as a result of continuously impinging of the India plate.

Re-evaluation of polyphase kinematic and 40Ar/39Ar cooling history of Moldanubian hot nappe at the eastern margin of the Bohemian Massif

NASA Astrophysics Data System (ADS)

Racek, M.; Lexa, O.; Schulmann, K.; Corsini, M.; Štípská, P.; Maierová, P.

2017-03-01

A structural and geochronological 40Ar/39Ar study was performed in kilometre-scale middle and lower crustal lens-shaped domains dominated by a preserved subvertical foliation, surrounded by horizontally foliated migmatites. These domains occur within the Moldanubian nappe overlying the Brunia microcontinent at the eastern margin of the European Variscides. Three main deformation phases were recognized: subvertical S2 fabric trending NW-SE in lower crustal rocks and NE-SW in mid-crustal rocks. It is reworked by HT/MT horizontal fabric S3 along margins of crustal domains and in surrounding migmatites. S3 bears a prolate NE lineation parallel to the S2-S3 intersection in the lower crustal domain. In the middle crustal units, L3 is weak, connected to oblate strain and trends NE-SW parallel to the S2-S3 intersection. D4 non-coaxial shear deformation is mainly localized at the boundary between the Moldanubian nappe and Brunia and bears strong top to the NNE shear criteria. In order to constrain kinematics of the D3 deformation, strain modelling was performed to show that the Moldanubian hot nappe was frontally thrust over the Brunia indentor. The renewed D4 tangential movement only heterogeneously reactivates the horizontal S3. This evolution is recorded in 40Ar/39Ar amphibole cooling ages, which show two statistically significant Carboniferous peaks at 342 and 332 Ma, which are also reflected by published detrital muscovite 40Ar/39Ar ages in the adjacent foreland basin. This geochronological record is correlated with progressive erosion of the topographically elevated upper crustal part of the Moldanubian nappe during D3 frontal thrusting, followed by greenschist facies D4 transpressive reactivation and subsequent erosion of high-grade parts of the nappe.

Structural basis for cyclization specificity of two Azotobacter type III polyketide synthases: a single amino acid substitution reverses their cyclization specificity.

PubMed

Satou, Ryutaro; Miyanaga, Akimasa; Ozawa, Hiroki; Funa, Nobutaka; Katsuyama, Yohei; Miyazono, Ken-ichi; Tanokura, Masaru; Ohnishi, Yasuo; Horinouchi, Sueharu

2013-11-22

Type III polyketide synthases (PKSs) show diverse cyclization specificity. We previously characterized two Azotobacter type III PKSs (ArsB and ArsC) with different cyclization specificity. ArsB and ArsC, which share a high sequence identity (71%), produce alkylresorcinols and alkylpyrones through aldol condensation and lactonization of the same polyketomethylene intermediate, respectively. Here we identified a key amino acid residue for the cyclization specificity of each enzyme by site-directed mutagenesis. Trp-281 of ArsB corresponded to Gly-284 of ArsC in the amino acid sequence alignment. The ArsB W281G mutant synthesized alkylpyrone but not alkylresorcinol. In contrast, the ArsC G284W mutant synthesized alkylresorcinol with a small amount of alkylpyrone. These results indicate that this amino acid residue (Trp-281 of ArsB or Gly-284 of ArsC) should occupy a critical position for the cyclization specificity of each enzyme. We then determined crystal structures of the wild-type and G284W ArsC proteins at resolutions of 1.76 and 1.99 Å, respectively. Comparison of these two ArsC structures indicates that the G284W substitution brings a steric wall to the active site cavity, resulting in a significant reduction of the cavity volume. We postulate that the polyketomethylene intermediate can be folded to a suitable form for aldol condensation only in such a relatively narrow cavity of ArsC G284W (and presumably ArsB). This is the first report on the alteration of cyclization specificity from lactonization to aldol condensation for a type III PKS. The ArsC G284W structure is significant as it is the first reported structure of a microbial resorcinol synthase.

Photoionization of rare gas clusters

NASA Astrophysics Data System (ADS)

Zhang, Huaizhen

This thesis concentrates on the study of photoionization of van der Waals clusters with different cluster sizes. The goal of the experimental investigation is to understand the electronic structure of van der Waals clusters and the electronic dynamics. These studies are fundamental to understand the interaction between UV-X rays and clusters. The experiments were performed at the Advanced Light Source at Lawrence Berkeley National Laboratory. The experimental method employs angle-resolved time-of-flight photoelectron spectrometry, one of the most powerful methods for probing the electronic structure of atoms, molecules, clusters and solids. The van der Waals cluster photoionization studies are focused on probing the evolution of the photoelectron angular distribution parameter as a function of photon energy and cluster size. The angular distribution has been known to be a sensitive probe of the electronic structure in atoms and molecules. However, it has not been used in the case of van der Waals clusters. We carried out outer-valence levels, inner-valence levels and core-levels cluster photoionization experiments. Specifically, this work reports on the first quantitative measurements of the angular distribution parameters of rare gas clusters as a function of average cluster sizes. Our findings for xenon clusters is that the overall photon-energy-dependent behavior of the photoelectrons from the clusters is very similar to that of the corresponding free atoms. However, distinct differences in the angular distribution point at cluster-size-dependent effects were found. For krypton clusters, in the photon energy range where atomic photoelectrons have a high angular anisotropy, our measurements show considerably more isotropic angular distributions for the cluster photoelectrons, especially right above the 3d and 4p thresholds. For the valence electrons, a surprising difference between the two spin-orbit components was found. For argon clusters, we found that the angular distribution parameter values of the two-spin-orbit components from Ar 2p clusters are slightly different. When comparing the beta values for Ar between atoms and clusters, we found different results between Ar 3s atoms and clusters, and between Ar 3p atoms and clusters. Argon cluster resonance from surface and bulk were also measured. Furthermore, the angular distribution parameters of Ar cluster photoelectrons and Ar atom photoelectrons in the 3s → np ionization region were obtained.

The Viking gas exchange experiment results from Chryse and Utopia surface samples

NASA Technical Reports Server (NTRS)

Oyama, V. I.; Berdahl, B. J.

1977-01-01

Immediate gas changes occurred when untreated Martian surface samples were humidified and/or wet by an aqueous nutrient medium in the Viking lander gas exchange experiment. The evolutions of N2, CO2, and Ar are mainly associated with soil surface desorption caused by water vapor, while O2 evolution is primarily associated with decomposition of superoxides inferred to be present on Mars. On recharges with fresh nutrient and test gas, only CO2 was given off, and its rate of evolution decreased with each recharge. This CO2 evolution is thought to come from the oxidation of organics present in the nutrient by gamma Fe2O3 in the surface samples. Atmospheric analyses were also performed at both sites. The mean atmospheric composition from four analyses is N2, 2.3%; O2, not greater than 0.15%; Ar, 1.5% and CO2, 96.2%.

Instrumentation development for In Situ 40Ar/39Ar planetary geochronology

USGS Publications Warehouse

Morgan, Leah; Munk, Madicken; Davidheiser-Kroll, Brett; Warner, Nicholas H.; Gupta, Sanjeev; Slaybaugh, Rachel; Harkness, Patrick; Mark, Darren

2017-01-01

The chronology of the Solar System, particularly the timing of formation of extra-terrestrial bodies and their features, is an outstanding problem in planetary science. Although various chronological methods for in situ geochronology have been proposed (e.g., Rb-Sr, K-Ar), and even applied (K-Ar), the reliability, accuracy, and applicability of the 40Ar/39Ar method makes it by far the most desirable chronometer for dating extra-terrestrial bodies. The method however relies on the neutron irradiation of samples, and thus a neutron source. Herein, we discuss the challenges and feasibility of deploying a passive neutron source to planetary surfaces for the in situ application of the 40Ar/39Ar chronometer. Requirements in generating and shielding neutrons, as well as analysing samples are described, along with an exploration of limitations such as mass, power and cost. Two potential solutions for the in situ extra-terrestrial deployment of the 40Ar/39Ar method are presented. Although this represents a challenging task, developing the technology to apply the 40Ar/39Ar method on planetary surfaces would represent a major advance towards constraining the timescale of solar system formation and evolution.

Dynamic defect annealing in wurtzite MgZnO implanted with Ar ions

NASA Astrophysics Data System (ADS)

Azarov, A. Yu.; Wendler, E.; Du, X. L.; Kuznetsov, A. Yu.; Svensson, B. G.

2015-09-01

Successful implementation of ion beams for modification of ternary ZnO-based oxides requires understanding and control of radiation-induced defects. Here, we study structural disorder in wurtzite ZnO and MgxZn1-xO (x ⩽ 0.3) samples implanted at room and 15 K temperatures with Ar ions in a wide fluence range (5 × 1012-3 × 1016 cm-2). The samples were characterized by Rutherford backscattering/channeling spectrometry performed in-situ without changing the sample temperature. The results show that all the samples exhibit high radiation resistance and cannot be rendered amorphous even for high ion fluences. Increasing the Mg content leads to some damage enhancement near the surface region; however, irrespective of the Mg content, the fluence dependence of bulk damage in the samples displays the so-called IV-stage evolution with a reverse temperature effect for high ion fluences.

Simulating the Coronal Evolution of AR 11437 Using SDO/HMI Magnetograms

NASA Astrophysics Data System (ADS)

Yardley, Stephanie L.; Mackay, Duncan H.; Green, Lucie M.

2018-01-01

The coronal magnetic field evolution of AR 11437 is simulated by applying the magnetofrictional relaxation technique of Mackay et al. A sequence of photospheric line-of-sight magnetograms produced by the Solar Dynamics Observatory (SDO)/Helioseismic Magnetic Imager (HMI) is used to drive the simulation and continuously evolve the coronal magnetic field of the active region through a series of nonlinear force-free equilibria. The simulation is started during the first stages of the active region emergence so that its full evolution from emergence to decay can be simulated. A comparison of the simulation results with SDO/Atmospheric Imaging Assembly (AIA) observations show that many aspects of the active region’s observed coronal evolution are reproduced. In particular, it shows the presence of a flux rope, which forms at the same location as sheared coronal loops in the observations. The observations show that eruptions occurred on 2012 March 17 at 05:09 UT and 10:45 UT and on 2012 March 20 at 14:31 UT. The simulation reproduces the first and third eruption, with the simulated flux rope erupting roughly 1 and 10 hr before the observed ejections, respectively. A parameter study is conducted where the boundary and initial conditions are varied along with the physical effects of Ohmic diffusion, hyperdiffusion, and an additional injection of helicity. When comparing the simulations, the evolution of the magnetic field, free magnetic energy, relative helicity and flux rope eruption timings do not change significantly. This indicates that the key element in reproducing the coronal evolution of AR 11437 is the use of line-of-sight magnetograms to drive the evolution of the coronal magnetic field.

Exploring Sulfur & Argon Abundances in Planetary Nebulae as Metallicity- Indicator Surrogates for Iron in the Interstellar Medium

NASA Astrophysics Data System (ADS)

Kwitter, Karen B.; Henry, Richard C.

1999-02-01

Our primary motivation for studying S and Ar distributions in planetary nebulae (PNe) across the Galactic disk is to explore the possibility of a surrogacy between (S+Ar)/O and Fe/O for use as a metallicity indicator in the interstellar medium. The chemical history of the Galaxy is usually studied through O and Fe distributions among objects of different ages. Historically, though, Fe and O have not been measured in the same systems: Fe is easily seen in stars but hard to detect in nebulae; the reverse is true for O. We know that S and Ar abundances are not affected by PN progenitor evolution, and we therefore seek to exploit both their unaltered abundances and ease of detectability in PNe to explore their surrogacy for Fe. If proven valid, this surrogacy carries broad and important ramifications for bridging the gap between stellar and interstellar abundances in the Galaxy, and potentially beyond. Observed S/O and Ar/O gradients will also provide constraints on theoretical stellar yields of S and Ar, since they can be compared with chemical evolution models (which incorporate theoretically-predicted stellar yields, an initial mass function, and rates of star formation and infall) to help place constraints on model parameters.

THE MAGNETIC SYSTEMS TRIGGERING THE M6.6 CLASS SOLAR FLARE IN NOAA ACTIVE REGION 11158

DOE Office of Scientific and Technical Information (OSTI.GOV)

Toriumi, Shin; Iida, Yusuke; Bamba, Yumi

2013-08-20

We report a detailed event analysis of the M6.6 class flare in the active region (AR) NOAA 11158 on 2011 February 13. AR 11158, which consisted of two major emerging bipoles, showed prominent activity including one X- and several M-class flares. In order to investigate the magnetic structures related to the M6.6 event, particularly the formation process of a flare-triggering magnetic region, we analyzed multiple spacecraft observations and numerical results of a flare simulation. We observed that, in the center of this quadrupolar AR, a highly sheared polarity inversion line (PIL) was formed through proper motions of the major magneticmore » elements, which built a sheared coronal arcade lying over the PIL. The observations lend support to the interpretation that the target flare was triggered by a localized magnetic region that had an intrusive structure, namely, a positive polarity penetrating into a negative counterpart. The geometrical relationship between the sheared coronal arcade and the triggering region is consistent with the theoretical flare model based on the previous numerical study. We found that the formation of the trigger region was due to the continuous accumulation of small-scale magnetic patches. A few hours before the flare occurred, the series of emerged/advected patches reconnected with a pre-existing field. Finally, the abrupt flare eruption of the M6.6 event started around 17:30 UT. Our analysis suggests that in the process of triggering flare activity, all magnetic systems on multiple scales are included, not only the entire AR evolution but also the fine magnetic elements.« less

Chronology of paleozoic metamorphism and deformation in the Blue Ridge thrust complex, North Carolina and Tennessee

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goldberg, S.A.; Dallmeyer, R.D.

1997-05-01

The Blue Ridge province in northwestern North Carolina and northeastern Tennessee records a multiphase collisional and accretionary history from the Mesoproterozoic through the Paleozoic. To constrain the tectonothermal evolution in this region, radiometric ages have been determined for 23 regionally metamorphosed amphibolites, granitic gneisses, and pelitic schists and from mylonites along shear zones that bound thrust sheets and within an internal shear zone. The garnet ages from the Pumpkin Patch a thrust sheet (458, 455, and 451 Ma) are similar to those from the structurally overlying Spruce Pine thrust sheet (460, 456, 455, and 450 Ma). Both thrust sheets exhibitmore » similar upper amphibolite-facies conditions. Because of the high closure temperature for garnet, the garnet ages are interpreted to date growth at or near the peak of Taconic metamorphism. Devonian metamorphic ages are recognized in the Spruce Pine thrust sheet, where Sm-Nd and Rb-Sr garnet ages of 386 and 393 Ma and mineral isochron ages of 397 {+-} 14 and 375 {+-} 27 Ma are preserved. Hornblendes record similar {sup 40}Ar/{sup 39}Ar, Sm-Nd, and Rb-Sr ages of 398 to 379 Ma. Devonian {sup 40}Ar/{sup 39}Ar hornblende ages are also recorded in the structurally lower Pumpkin Patch thrust sheet. The Devonian mineral ages are interpreted to date a discrete tectonothermal event, as opposed to uplift and slow cooling from an Ordovician metamorphic event. The Mississippian mylonitization is interpreted to represent thrusting and initial assembly of crystalline sheets associated with the Alleghanian orogeny. The composite thrust stack of the Blue Ridge complex was subsequently thrust northwestward along the Linville Falls fault during middle Alleghanian orogeny (about 300 Ma).« less

Influence of inert gases on the reactive high power pulsed magnetron sputtering process of carbon-nitride thin films

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schmidt, Susann; Czigany, Zsolt; Greczynski, Grzegorz

2013-01-15

The influence of inert gases (Ne, Ar, Kr) on the sputter process of carbon and carbon-nitride (CN{sub x}) thin films was studied using reactive high power pulsed magnetron sputtering (HiPIMS). Thin solid films were synthesized in an industrial deposition chamber from a graphite target. The peak target current during HiPIMS processing was found to decrease with increasing inert gas mass. Time averaged and time resolved ion mass spectroscopy showed that the addition of nitrogen, as reactive gas, resulted in less energetic ion species for processes employing Ne, whereas the opposite was noticed when Ar or Kr were employed as inertmore » gas. Processes in nonreactive ambient showed generally lower total ion fluxes for the three different inert gases. As soon as N{sub 2} was introduced into the process, the deposition rates for Ne and Ar-containing processes increased significantly. The reactive Kr-process, in contrast, showed slightly lower deposition rates than the nonreactive. The resulting thin films were characterized regarding their bonding and microstructure by x-ray photoelectron spectroscopy and transmission electron microscopy. Reactively deposited CN{sub x} thin films in Ar and Kr ambient exhibited an ordering toward a fullerene-like structure, whereas carbon and CN{sub x} films deposited in Ne atmosphere were found to be amorphous. This is attributed to an elevated amount of highly energetic particles observed during ion mass spectrometry and indicated by high peak target currents in Ne-containing processes. These results are discussed with respect to the current understanding of the structural evolution of a-C and CN{sub x} thin films.« less

Key structural features of nonsteroidal ligands for binding and activation of the androgen receptor.

PubMed

Yin, Donghua; He, Yali; Perera, Minoli A; Hong, Seoung Soo; Marhefka, Craig; Stourman, Nina; Kirkovsky, Leonid; Miller, Duane D; Dalton, James T

2003-01-01

The purposes of the present studies were to examine the androgen receptor (AR) binding ability and in vitro functional activity of multiple series of nonsteroidal compounds derived from known antiandrogen pharmacophores and to investigate the structure-activity relationships (SARs) of these nonsteroidal compounds. The AR binding properties of sixty-five nonsteroidal compounds were assessed by a radioligand competitive binding assay with the use of cytosolic AR prepared from rat prostates. The AR agonist and antagonist activities of high-affinity ligands were determined by the ability of the ligand to regulate AR-mediated transcriptional activation in cultured CV-1 cells, using a cotransfection assay. Nonsteroidal compounds with diverse structural features demonstrated a wide range of binding affinity for the AR. Ten compounds, mainly from the bicalutamide-related series, showed a binding affinity superior to the structural pharmacophore from which they were derived. Several SARs regarding nonsteroidal AR binding were revealed from the binding data, including stereoisomeric conformation, steric effect, and electronic effect. The functional activity of high-affinity ligands ranged from antagonist to full agonist for the AR. Several structural features were found to be determinative of agonist and antagonist activities. The nonsteroidal AR agonists identified from the present studies provided a pool of candidates for further development of selective androgen receptor modulators (SARMs) for androgen therapy. Also, these studies uncovered or confirmed numerous important SARs governing AR binding and functional properties by nonsteroidal molecules, which would be valuable in the future structural optimization of SARMs.

Evolution of low-aspect-ratio rectangular synthetic jets in a quiescent environment

NASA Astrophysics Data System (ADS)

Wang, Lei; Feng, Li-Hao; Wang, Jin-Jun; Li, Tian

2018-06-01

An experimental study was conducted on the evolution of low-aspect-ratio (AR) rectangular synthetic jets using time-resolved two-dimensional particle image velocimetry and stereoscopic particle image velocimetry. Five orifice ARs ranging from 1 to 5 were found to have an obvious effect on the axis switching of vortex rings and the near-field flow physics at a uniform Reynolds number of 166 and non-dimensional stroke length of 4.5. Compared with conventional continuous jets, rectangular synthetic jets displayed more times of axis switching and the first axis-switching location was closer to the jet exit. Two types of different streamwise vortices, SV-I and SV-II, were detected in the near field as the characteristic products of axis switching. Influenced by the axis switching and streamwise vortices, significant entrainment and mixing enhancement was demonstrated for low-AR rectangular synthetic jets.

High-resolution 40Ar/39Ar geochronology of volcanic rocks from the Siebengebirge (Central Germany)—Implications for eruption timescales and petrogenetic evolution of intraplate volcanic fields

NASA Astrophysics Data System (ADS)

Przybyla, Thomas; Pfänder, Jörg A.; Münker, Carsten; Kolb, Melanie; Becker, Maike; Hamacher, Uli

2018-06-01

A key parameter in understanding mantle dynamics beneath continents is the temporal evolution of intraplate volcanism in response to lithospheric thinning and asthenospheric uplift. To contribute to a better understanding of how intraplate volcanic fields evolve through time, we present a high precision 40Ar/39Ar age dataset for volcanic rocks from the Siebengebirge volcanic field (SVF) from central Germany, one of the best studied and compositionally most diverse intraplate volcanic fields of the Cenozoic Central European Volcanic Province (CEVP). Petrological and geochemical investigations suggest that the formation of the different rock types that occur in the SVF can be explained by a combination of assimilation and fractional crystallisation processes, starting from at least two different parental magmas with different levels of silica saturation (alkali basaltic and basanitic), and originating from different mantle sources. These evolved along two differentiation trends to latites and trachytes, and to tephrites and tephriphonolites, respectively. In contrast to their petrogenesis, the temporal evolution of the different SVF suites is poorly constrained. Previous K/Ar ages suggested a time of formation between about 28 and 19 Ma for the mafic rocks, and of about 27 to 24 Ma for the differentiated rocks. Our results confirm at high precision that the differentiated lithologies of both alkaline suites (40Ar/39Ar ages from 25.3 ± 0.2 Ma to 25.9 ± 0.3 Ma) erupted contemporaneously within a very short time period of 0.6 Ma, whereas the eruption of mafic rocks (basanites) lasted at least 8 Ma (40Ar/39Ar ages from 22.2 ± 0.2 Ma to 29.5 ± 0.3 Ma). This implies that felsic magmatism in the central SVF was likely a single event, possibly triggered by an intense phase of rifting, and that ongoing melting and eruption of mostly undifferentiated mafic lavas dominate the > 8 Ma long magmatic history of this region. Among the mafic lavas, most basanites and tephrites predate the alkali basalts and hawaiites, suggesting an overall temporal evolution towards less SiO2-undersaturated primary melts and increasing degrees of melting over time. The peak in alkali basaltic to hawaiitic magmatism slightly post dates the flare-up of genetically related felsic magmatism, by no more than 1 Ma. This is consistent with a model in which the magmatic plumbing system erupted successively from upper to lower levels, i.e. from more evolved to more primitive compositions. One young age for a basanitic sample suggests that silica saturation decreased again towards the end of volcanic activity. This chronology of volcanic events is in good agreement with previous models, suggesting continuous lithospheric thinning beneath the SVF as a response to an extensional regime and asthenospheric uplift in the northern alpine realm.

High-resolution 40Ar/39Ar geochronology of volcanic rocks from the Siebengebirge (Central Germany)—Implications for eruption timescales and petrogenetic evolution of intraplate volcanic fields

NASA Astrophysics Data System (ADS)

Przybyla, Thomas; Pfänder, Jörg A.; Münker, Carsten; Kolb, Melanie; Becker, Maike; Hamacher, Uli

2017-11-01

A key parameter in understanding mantle dynamics beneath continents is the temporal evolution of intraplate volcanism in response to lithospheric thinning and asthenospheric uplift. To contribute to a better understanding of how intraplate volcanic fields evolve through time, we present a high precision 40Ar/39Ar age dataset for volcanic rocks from the Siebengebirge volcanic field (SVF) from central Germany, one of the best studied and compositionally most diverse intraplate volcanic fields of the Cenozoic Central European Volcanic Province (CEVP). Petrological and geochemical investigations suggest that the formation of the different rock types that occur in the SVF can be explained by a combination of assimilation and fractional crystallisation processes, starting from at least two different parental magmas with different levels of silica saturation (alkali basaltic and basanitic), and originating from different mantle sources. These evolved along two differentiation trends to latites and trachytes, and to tephrites and tephriphonolites, respectively. In contrast to their petrogenesis, the temporal evolution of the different SVF suites is poorly constrained. Previous K/Ar ages suggested a time of formation between about 28 and 19 Ma for the mafic rocks, and of about 27 to 24 Ma for the differentiated rocks. Our results confirm at high precision that the differentiated lithologies of both alkaline suites (40Ar/39Ar ages from 25.3 ± 0.2 Ma to 25.9 ± 0.3 Ma) erupted contemporaneously within a very short time period of 0.6 Ma, whereas the eruption of mafic rocks (basanites) lasted at least 8 Ma (40Ar/39Ar ages from 22.2 ± 0.2 Ma to 29.5 ± 0.3 Ma). This implies that felsic magmatism in the central SVF was likely a single event, possibly triggered by an intense phase of rifting, and that ongoing melting and eruption of mostly undifferentiated mafic lavas dominate the > 8 Ma long magmatic history of this region. Among the mafic lavas, most basanites and tephrites predate the alkali basalts and hawaiites, suggesting an overall temporal evolution towards less SiO2-undersaturated primary melts and increasing degrees of melting over time. The peak in alkali basaltic to hawaiitic magmatism slightly post dates the flare-up of genetically related felsic magmatism, by no more than 1 Ma. This is consistent with a model in which the magmatic plumbing system erupted successively from upper to lower levels, i.e. from more evolved to more primitive compositions. One young age for a basanitic sample suggests that silica saturation decreased again towards the end of volcanic activity. This chronology of volcanic events is in good agreement with previous models, suggesting continuous lithospheric thinning beneath the SVF as a response to an extensional regime and asthenospheric uplift in the northern alpine realm.

PARALLEL EVOLUTION OF QUASI-SEPARATRIX LAYERS AND ACTIVE REGION UPFLOWS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mandrini, C. H.; Cristiani, G. D.; Nuevo, F. A.

2015-08-10

Persistent plasma upflows were observed with Hinode’s EUV Imaging Spectrometer (EIS) at the edges of active region (AR) 10978 as it crossed the solar disk. We analyze the evolution of the photospheric magnetic and velocity fields of the AR, model its coronal magnetic field, and compute the location of magnetic null-points and quasi-sepratrix layers (QSLs) searching for the origin of EIS upflows. Magnetic reconnection at the computed null points cannot explain all of the observed EIS upflow regions. However, EIS upflows and QSLs are found to evolve in parallel, both temporarily and spatially. Sections of two sets of QSLs, calledmore » outer and inner, are found associated to EIS upflow streams having different characteristics. The reconnection process in the outer QSLs is forced by a large-scale photospheric flow pattern, which is present in the AR for several days. We propose a scenario in which upflows are observed, provided that a large enough asymmetry in plasma pressure exists between the pre-reconnection loops and lasts as long as a photospheric forcing is at work. A similar mechanism operates in the inner QSLs; in this case, it is forced by the emergence and evolution of the bipoles between the two main AR polarities. Our findings provide strong support for the results from previous individual case studies investigating the role of magnetic reconnection at QSLs as the origin of the upflowing plasma. Furthermore, we propose that persistent reconnection along QSLs does not only drive the EIS upflows, but is also responsible for the continuous metric radio noise-storm observed in AR 10978 along its disk transit by the Nançay Radio Heliograph.« less

Geospeedometry in the inverted metamorphic gradient of the Nestos Thrust Zone in central Rhodope (Northern Greece)

NASA Astrophysics Data System (ADS)

Cioldi, Stefania; Moulas, Evangelos; Burg, Jean-Pierre

2015-04-01

Thrust tectonics and inverted metamorphic gradients are major consequences of large and likely fast movements of crustal segments in compressional environments. The purpose of this study is to investigate the tectonic setting and the timescale of inverted metamorphic zonations related to crustal-scale thrusting. The aim is to contribute understanding the link between mechanical and thermal evolution of major thrust zones and to clarify the nature and the origin of orogenic heat. The Rhodope metamorphic complex (Northern Greece) is interpreted as a part of the Alpine-Himalaya orogenic belt and represents a collisional system with an association of both large-scale thrusting and pervasive exhumation tectonics. The Nestos Shear Zone overprints the suture boundary with a NNE-dipping pile of schists displaying inverted isograds. The inverted metamorphic zones start from chlorite-muscovite grade at the bottom and reach kyanite-sillimanite grades with migmatites in the upper structural levels. In order to reconstruct the thermo-tectonic evolution of inverted metamorphic zonation, reliable geochronological data are essential. 40Ar/39Ar geochronology with step-heating technique on white mica from micaschists provided a temporal resolution with the potential to characterize shearing. 40Ar/39Ar dating across the Nestos Shear Zone yields Late Eocene-Early Oligocene (40-30 Ma) cooling (~400-350° C) ages, which correspond to local thermo-deformation episodes linked to late and post-orogenic intrusions. U-Pb Sensitive High Resolution Ion Microprobe (SHRIMP) zircon geochronology on leucosomes from migmatitic orthogneisses were considered to estimate the age of peak metamorphic conditions, contemporaneous with anatexis. U-Pb ages of zircon rims specify regional partial melting during the Early Cretaceous (160-120 Ma). This is in disagreement with previous assertions, which argued that the formation of leucosomes in this region is Late Eocene (42-35 Ma) and implied multiple subductions and multiple metamorphic cycles during orogeny. Garnet geospeedometry considers the kinetic response of minerals and allowed estimating the absolute time-dependent thermal evolution by diffusive element profiles in garnet. Inverse-fitting numerical model considering Fractionation and Diffusion in GarnEt (FRIDGE) calculates garnet composition profiles by introducing P-T-t paths and bulk-rock composition of a specific sample. Preliminary results of Fe-Mg - Ca - Mn garnet fractionation-diffusion modelling indicate very short timescale (between 2 and 5 Ma) for peak metamorphic conditions in the Rhodope collisional system.

Variation in the terrestrial isotopic composition and atomic weight of argon

USGS Publications Warehouse

Böhlke, John Karl

2014-01-01

The isotopic composition and atomic weight of argon (Ar) are variable in terrestrial materials. Those variations are a source of uncertainty in the assignment of standard properties for Ar, but they provide useful information in many areas of science. Variations in the stable isotopic composition and atomic weight of Ar are caused by several different processes, including (1) isotope production from other elements by radioactive decay (radiogenic isotopes) or other nuclear transformations (e.g., nucleogenic isotopes), and (2) isotopic fractionation by physical-chemical processes such as diffusion or phase equilibria. Physical-chemical processes cause correlated mass-dependent variations in the Ar isotope-amount ratios (40Ar/36Ar, 38Ar/36Ar), whereas nuclear transformation processes cause non-mass-dependent variations. While atmospheric Ar can serve as an abundant and homogeneous isotopic reference, deviations from the atmospheric isotopic ratios in other Ar occurrences limit the precision with which a standard atomic weight can be given for Ar. Published data indicate variation of Ar atomic weights in normal terrestrial materials between about 39.7931 and 39.9624. The upper bound of this interval is given by the atomic mass of 40Ar, as some samples contain almost pure radiogenic 40Ar. The lower bound is derived from analyses of pitchblende (uranium mineral) containing large amounts of nucleogenic 36Ar and 38Ar. Within this interval, measurements of different isotope ratios (40Ar/36Ar or 38Ar/36Ar) at various levels of precision are widely used for studies in geochronology, water–rock interaction, atmospheric evolution, and other fields.

Identifying artificial selection signals in the chicken genome.

PubMed

Ma, Yunlong; Gu, Lantao; Yang, Liubin; Sun, Chenghao; Xie, Shengsong; Fang, Chengchi; Gong, Yangzhang; Li, Shijun

2018-01-01

Identifying the signals of artificial selection can contribute to further shaping economically important traits. Here, a chicken 600k SNP-array was employed to detect the signals of artificial selection using 331 individuals from 9 breeds, including Jingfen (JF), Jinghong (JH), Araucanas (AR), White Leghorn (WL), Pekin-Bantam (PB), Shamo (SH), Gallus-Gallus-Spadiceus (GA), Rheinlander (RH) and Vorwerkhuhn (VO). Per the population genetic structure, 9 breeds were combined into 5 breed-pools, and a 'two-step' strategy was used to reveal the signals of artificial selection. GA, which has little artificial selection, was defined as the reference population, and a total of 204, 155, 305 and 323 potential artificial selection signals were identified in AR_VO, PB, RH_WL and JH_JF, respectively. We also found signals derived from standing and de-novo genetic variations have contributed to adaptive evolution during artificial selection. Further enrichment analysis suggests that the genomic regions of artificial selection signals harbour genes, including THSR, PTHLH and PMCH, responsible for economic traits, such as fertility, growth and immunization. Overall, this study found a series of genes that contribute to the improvement of chicken breeds and revealed the genetic mechanisms of adaptive evolution, which can be used as fundamental information in future chicken functional genomics study.

Quantifying the Topology and Evolution of a Magnetic Flux Rope Associated with Multi-flare Activities

NASA Astrophysics Data System (ADS)

Yang, Kai; Guo, Yang; Ding, M. D.

2016-06-01

Magnetic flux ropes (MFRs) play an important role in solar activities. The quantitative assessment of the topology of an MFR and its evolution is crucial for a better understanding of the relationship between the MFR and associated activities. In this paper, we investigate the magnetic field of active region (AR) 12017 from 2014 March 28-29, during which time 12 flares were triggered by intermittent eruptions of a filament (either successful or confined). Using vector magnetic field data from the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory, we calculate the magnetic energy and helicity injection in the AR, and extrapolate the 3D magnetic field with a nonlinear force-free field model. From the extrapolations, we find an MFR that is cospatial with the filament. We further determine the configuration of this MFR from the closed quasi-separatrix layer (QSL) around it. Then, we calculate the twist number and the magnetic helicity for the field lines composing the MFR. The results show that the closed QSL structure surrounding the MFR becomes smaller as a consequence of flare occurrence. We also find that the flares in our sample are mainly triggered by kink instability. Moreover, the twist number varies more sensitively than other parameters with the occurrence of flares.

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer.

PubMed

Wolf, Yuri I; Makarova, Kira S; Yutin, Natalya; Koonin, Eugene V

2012-12-14

Collections of Clusters of Orthologous Genes (COGs) provide indispensable tools for comparative genomic analysis, evolutionary reconstruction and functional annotation of new genomes. Initially, COGs were made for all complete genomes of cellular life forms that were available at the time. However, with the accumulation of thousands of complete genomes, construction of a comprehensive COG set has become extremely computationally demanding and prone to error propagation, necessitating the switch to taxon-specific COG collections. Previously, we reported the collection of COGs for 41 genomes of Archaea (arCOGs). Here we present a major update of the arCOGs and describe evolutionary reconstructions to reveal general trends in the evolution of Archaea. The updated version of the arCOG database incorporates 91% of the pangenome of 120 archaea (251,032 protein-coding genes altogether) into 10,335 arCOGs. Using this new set of arCOGs, we performed maximum likelihood reconstruction of the genome content of archaeal ancestral forms and gene gain and loss events in archaeal evolution. This reconstruction shows that the last Common Ancestor of the extant Archaea was an organism of greater complexity than most of the extant archaea, probably with over 2,500 protein-coding genes. The subsequent evolution of almost all archaeal lineages was apparently dominated by gene loss resulting in genome streamlining. Overall, in the evolution of Archaea as well as a representative set of bacteria that was similarly analyzed for comparison, gene losses are estimated to outnumber gene gains at least 4 to 1. Analysis of specific patterns of gene gain in Archaea shows that, although some groups, in particular Halobacteria, acquire substantially more genes than others, on the whole, gene exchange between major groups of Archaea appears to be largely random, with no major 'highways' of horizontal gene transfer. The updated collection of arCOGs is expected to become a key resource for comparative genomics, evolutionary reconstruction and functional annotation of new archaeal genomes. Given that, in spite of the major increase in the number of genomes, the conserved core of archaeal genes appears to be stabilizing, the major evolutionary trends revealed here have a chance to stand the test of time. This article was reviewed by (for complete reviews see the Reviewers' Reports section): Dr. PLG, Prof. PF, Dr. PL (nominated by Prof. JPG).

Enemy at the gates: Rapid defensive trait diversification in an adaptive radiation of lizards.

PubMed

Broeckhoven, Chris; Diedericks, Genevieve; Hui, Cang; Makhubo, Buyisile G; Mouton, P le Fras N

2016-11-01

Adaptive radiation (AR), the product of rapid diversification of an ancestral species into novel adaptive zones, has become pivotal in our understanding of biodiversity. Although it has widely been accepted that predators may drive the process of AR by creating ecological opportunity (e.g., enemy-free space), the role of predators as selective agents in defensive trait diversification remains controversial. Using phylogenetic comparative methods, we provide evidence for an "early burst" in the diversification of antipredator phenotypes in Cordylinae, a relatively small AR of morphologically diverse southern African lizards. The evolution of body armor appears to have been initially rapid, but slowed down over time, consistent with the ecological niche-filling model. We suggest that the observed "early burst" pattern could be attributed to shifts in vulnerability to different types of predators (i.e., aerial versus terrestrial) associated with thermal habitat partitioning. These results provide empirical evidence supporting the hypothesis that predators or the interaction therewith might be key components of ecological opportunity, although the way in which predators influence morphological diversification requires further study. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

COMET-AR User's Manual: COmputational MEchanics Testbed with Adaptive Refinement

NASA Technical Reports Server (NTRS)

Moas, E. (Editor)

1997-01-01

The COMET-AR User's Manual provides a reference manual for the Computational Structural Mechanics Testbed with Adaptive Refinement (COMET-AR), a software system developed jointly by Lockheed Palo Alto Research Laboratory and NASA Langley Research Center under contract NAS1-18444. The COMET-AR system is an extended version of an earlier finite element based structural analysis system called COMET, also developed by Lockheed and NASA. The primary extensions are the adaptive mesh refinement capabilities and a new "object-like" database interface that makes COMET-AR easier to extend further. This User's Manual provides a detailed description of the user interface to COMET-AR from the viewpoint of a structural analyst.

The Western Cycladic Detachment System on Makronisos, Greece

NASA Astrophysics Data System (ADS)

Loisl, Johannes; Lindner, Karoline; Huet, Benjamin; Grasemann, Bernhard; Rice, A. Hugh. N.; Soukis, Konstantinos; Schneider, David

2014-05-01

Makronisos, which lies 3 km east of the Attica port of Lavrion, is the northwesternmost part of the Western Cycladic archipelago. The Cyclades and adjacent part of Attica are dominated by Miocene low-angle detachments that developed during top-to-SSW crustal extension, forming the West Cycladic Detachment System. Although extension is well documented on the other Western Cycladic islands and in Attica, the geology of Makronisos is poorly known. The aim of this study is to provide data on the structural, microstructural and metamorphic evolution of Makronisos to resolve its tectonostratigraphic position and its relationships within the Cycladic realm. Most of Makronisos consists of grey, locally graphitic, pelitic schists and yellowish impure marbles, interlayed with blue-grey mylonitic marbles and quartzites, forming large-scale pinch-and-swell structures. Metabasites are present as small bodies along the east side of the island but are thicker and more continuous in the southeast. Petrography shows that metabasites usually contain blue amphiboles, although generally only as relicts after greenschist facies retrogression. Serpentinite has been found at two localities. The structurally highest level of the island consists of white-grey to pale-red ultramylonites up to 40 m thick. These mainly lie on the central ridge of the island, but, due to large-scale upright folding, also crop out along the east and west coasts. In several places, the ultramylonites overlie 1-2 m of foliated ultracataclasites derived from the footwall pelitic schists. Stretching lineations and macroscopic shear-criteria indicate a top-to-SSW shear-sense. Microstructural analyses consistently show the same shear-sense, indicated by shape and crystal preferred orientations, σ- and δ-clasts, mica-fish, rotated veins and SCC' structures. Deformation mechanisms observed in quartz (LT-bulging) and calcite (recrystallization) are evidence for deformation temperatures of c. 300°C. Albite porphyroclasts may preserve an older foliation and layering, exhibiting features of an earlier, higher grade metamorphism and deformation phase. This evolution is consistent with progressive cooling during top-to-SSW deformation. The relict HP-mineral assemblages indicate a correlation with the Cycladic Blueschist Unit and hence the white-grey to pale-red ultramylonites forming the structurally uppermost part of the island can be interpreted as a part of the footwall of the Western Cycladic Detachment System. 40Ar/39Ar analyses on metamorphic white mica from pelitic schists, quartzites and marble mylonites/ultramylonites yield ages between 15 and 22 Ma, with a positive correlation between young ages and higher strain. These results are younger than 40Ar/39Ar ages in the Cycladic Blueschist Unit on Evvia (55-45 Ma and 35-30 Ma) but are similar to white mica ages on nearby Kea. In combination with the given tectonometamorphic data, this suggests that Makronisos underwent a similar geological history as other Western Cycladic islands.

A study of silver species on silver-exchanged ETS-10 and mordenite by XRD, SEM and solid-state 109Ag, 29Si and 27AI NMR spectroscopy.

PubMed

Liu, Yan; Chen, Fu; Wasylishen, Roderick E; Xu, Zhenghe; Sawada, James; Kuznicki, Steven M

2012-08-01

Silver zeolites, especially Ag-ETS-10 and Ag-mordenite, actively bind xenon and iodine, two prime contaminants common to nuclear accidents. The evolution of silver species on silver exchanged ETS-10 (Ag/ETS-10) and mordenite (Ag/Mor) has been investigated by exposing the materials to a series of activation conditions in Ar, air and H2. The samples were characterized by XRD, SEM and solid-state 109Ag, 29Si and 27AI MAS NMR. The silver reduction and structural evolution have been illustrated by those techniques. The effectiveness of one sample of each type of sieve was tested for its ability to trap mercury from a gas stream. However, the results from this study demonstrate that the adsorption characteristics of silver-loaded sieves cannot necessarily be predicted using a full complement of structural characterization techniques, which highlights the importance of understanding the formation and nature of silver species on molecular sieves.

Mid-Cretaceous oblique rifting of West Antarctica: Emplacement and rapid cooling of the Fosdick Mountains migmatite-cored gneiss dome

USGS Publications Warehouse

McFadden, Rory; Teyssier, Christian; Siddoway, Christine; Cosca, Michael A.; Fanning, C. Mark

2015-01-01

In Marie Byrd Land, West Antarctica, the Fosdick Mountains migmatite-cored gneiss dome was exhumed from mid- to lower middle crustal depths during the incipient stage of the West Antarctic Rift system in the mid-Cretaceous. Prior to and during exhumation, major crustal melting and deformation included transfer and emplacement of voluminous granitic material and numerous intrusions of mantle-derived diorite in dikes. A succession of melt- and magma-related structures formed at temperatures in excess of 665 ± 50 °C based on Ti-in-zircon thermometry. These record a transition from wrench to oblique extensional deformation that culminated in the development of the oblique South Fosdick Detachment zone. Solid-state fabrics within the detachment zone and overprinting brittle structures record translation of the detachment zone and dome to shallow levels.To determine the duration of exhumation and cooling, we sampled granite and gneisses at high spatial resolution for U–Pb zircon geochronology and 40Ar/39Ar hornblende and biotite thermochronology. U–Pb zircon crystallization ages for the youngest granites are 102 Ma. Three hornblende ages are 103 to 100 Ma and 12 biotite ages are 101 to 99 Ma. All overlap within uncertainty. The coincidence of zircon crystallization ages with 40Ar/39Ar cooling ages indicates cooling rates > 100 °C/m.y. that, when considered together with overprinting structures, indicates rapid exhumation of granite and migmatite from deep to shallow crustal levels within a transcurrent setting. Orientations of structures and age-constrained crosscutting relationships indicate counterclockwise rotation of stretching axes from oblique extension into nearly orthogonal extension with respect to the Marie Byrd Land margin. The rotation may be a result of localized extension arising from unroofing and arching of the Fosdick dome, extensional opening within a pull-apart zone, or changes in plate boundary configuration.The rapid tectonic and temperature evolution of the Fosdick Mountains dome lends support to recently developed numerical models of crustal flow and cooling in orogenic crust undergoing extension/transtension, and accords with numerous studies of migmatite-cored gneiss domes in transcurrent settings.

Investigation of high power impulse magnetron sputtering (HIPIMS) discharge using fast ICCD camera

NASA Astrophysics Data System (ADS)

Hecimovic, Ante

2012-10-01

High power impulse magnetron sputtering (HIPIMS) combines impulse glow discharges at power levels up to the MW range with conventional magnetron cathodes to achieve a highly ionised sputtered flux. The dynamics of the HIPIMS discharge was investigated using fast Intensified Charge Coupled Device (ICCD) camera. In the first experiment the HIPIMS plasma was recorded from the side with goal to analyse the plasma intensity using Abel inversion to obtain the emissivity maps of the plasma species. Resulting emissivity maps provide the information on the spatial distribution of Ar and sputtered material and evolution of the plasma chemistry above the cathode. In the second experiment the plasma emission was recorded with camera facing the target. The images show that the HIPIMS plasma develops drift wave type instabilities characterized by well defined regions of high and low plasma emissivity along the racetrack of the magnetron. The instabilities cause periodic shifts in the floating potential. The structures rotate in ExB direction at velocities of 10 kms-1 and frequencies up to 200 kHz. The high emissivity regions comprise Ar and metal ion emission with strong Ar and metal neutral emission depletion. A detailed analysis of the temporal evolution of the saturated instabilities using four consequently triggered fast ICCD cameras is presented. Furthermore working gas pressure and discharge current variation showed that the shape and the speed of the instability strongly depend on the working gas and target material combination. In order to better understand the mechanism of the instability, different optical interference band pass filters (of metal and gas atom, and ion lines) were used to observe the spatial distribution of each species within the instability.

Discovery and functional characterisation of a luqin-type neuropeptide signalling system in a deuterostome.

PubMed

Yañez-Guerra, Luis Alfonso; Delroisse, Jérôme; Barreiro-Iglesias, Antón; Slade, Susan E; Scrivens, James H; Elphick, Maurice R

2018-05-08

Neuropeptides are diverse and evolutionarily ancient regulators of physiological/behavioural processes in animals. Here we have investigated the evolution and comparative physiology of luqin-type neuropeptide signalling, which has been characterised previously in protostomian invertebrates. Phylogenetic analysis indicates that luqin-type receptors and tachykinin-type receptors are paralogous and probably originated in a common ancestor of the Bilateria. In the deuterostomian lineage, luqin-type signalling has been lost in chordates but interestingly it has been retained in ambulacrarians. Therefore, here we characterised luqin-type signalling for the first time in an ambulacrarian - the starfish Asterias rubens (phylum Echinodermata). A luqin-like neuropeptide with a C-terminal RWamide motif (ArLQ; EEKTRFPKFMRW-NH 2 ) was identified as the ligand for two luqin-type receptors in A. rubens, ArLQR1 and ArLQR2. Furthermore, analysis of the expression of the ArLQ precursor using mRNA in situ hybridisation revealed expression in the nervous system, digestive system and locomotory organs (tube feet) and in vitro pharmacology revealed that ArLQ causes dose-dependent relaxation of tube feet. Accordingly, previous studies have revealed that luqin-type signalling regulates feeding and locomotor activity in protostomes. In conclusion, our phylogenetic analysis combined with characterisation of luqin-type signalling in a deuterostome has provided new insights into neuropeptide evolution and function in the animal kingdom.

Multi-stage metamorphism in the South Armenian Block during the Late Jurassic to Early Cretaceous: Tectonics over south-dipping subduction of Northern branch of Neotethys

NASA Astrophysics Data System (ADS)

Hässig, M.; Rolland, Y.; Sahakyan, L.; Sosson, M.; Galoyan, G.; Avagyan, A.; Bosch, D.; Müller, C.

2015-04-01

The geologic evolution of the South Armenian Block (SAB) in the Mesozoic is reconstructed from a structural, metamorphic, and geochronologic study including U-Pb and 40Ar/39Ar dating. The South Armenian Block Crystalline Basement (SABCB) outcrops solely in a narrow tectonic window, NW of Yerevan. The study of this zone provides key and unprecedented information concerning closing of the Northern Neotethys oceanic domain north of the Taurides-Anatolides platform from the Middle Jurassic to the Early Cretaceous. The basement comprises of presumed Proterozoic orthogneiss overlain by metamorphosed pelites as well as intrusions of granodiorite and leucogranite during the Late Jurassic and Early Cretaceous. Structural, geochronological and petrological observations show a multiphased evolution of the northern margin of the SAB during the Late Jurassic and Early Cretaceous. A south-dipping subduction under the East Anatolian Platform-South Armenian Block (EAP-SAB) is proposed in order to suit recent findings pertaining emplacement of relatively hot subduction related granodiorite as well as the metamorphic evolution of the crystalline basement in the Lesser Caucasus area. The metamorphism is interpreted as evidencing: (1) M1 Barrovian MP-MT conditions (staurolite-kyanite) at c. 157-160 Ma and intrusion of dioritic magmas at c. 150-156 Ma, (2) near-adiabatic decompression is featured by partial melting and production of leucogranites at c. 153 Ma, followed by M2 HT-LP conditions (andalusite-K-feldspar). A phase of shearing and recrystallization is ascribed to doming at c. 130-150 Ma and cooling at 400 °C by c. 123 Ma (M3). Structural observations show (1) top to the north shearing during M1 and (2) radial extension during M2. The extensional event ends by emplacement of a thick detrital series along radial S, E and W-dipping normal faults. Further, the crystalline basement is unconformably covered by Upper Cretaceous-Paleocene series dated by nannofossils, evolving from Maastrichtian marly sandstones to Paleocene limestones.

Recognition of hyper-extended rifted margin remnants in the internal zone of the Alpine belt: A tribute to Marco Beltrando

NASA Astrophysics Data System (ADS)

Mohn, Geoffroy; Manatschal, Gianreto

2016-04-01

Marco Beltrando was part of the young generation of Alpine geologists who challenged the interpretation of the Western Alps by combining a classical field approach and modern techniques (e.g. 40Ar/39Ar and (U-Th)/He thermochronology). His work provides the foundation to re-interpret some of the classical sections through the Alpine belt and may impact the way of thinking about the nature and structure of internal parts of collisional orogens. This contribution will present the main outcomes of the work of Marco Beltrando and their implications for the understanding of Alpine type orogens. Since his PhD, Marco Beltrando focused most of his work on the study of the internal parts of the Western Alps. He investigated in great details the complex, multiphase structural and metamorphic evolution of the Penninic units in the Western Alps. He concluded that these units went through several cycles of shortening and extension during the Alpine orogeny, with major implications for the Alps but also other orogenic belts. After his PhD, he focused his research on the pre-orogenic evolution of the Alpine belt. He first worked on the Petit St. Bernard area, where he identified relics of the former hyper-extended Tethyan rifted margin. Thanks to his work and his amazing knowledge of the Western Alps, he understood the potential importance of rift-inheritance in controlling the architecture and evolution of the Alpine belt. In parallel to the study of the orogenic evolution, he developed a new methodology to recognize rift-related lithostratigraphic units in highly deformed and metamorphosed parts of the Alps. His innovative work allowed a re-assessment of several areas in the Western Alps and demonstrates the importance of rift inheritance. Recently, he started a new research project on the evolution of the Southern Alps highlighting the importance of heating and cooling cycles resulting from complex successions of rifting events. In spite of his young age, Marco Beltrando was at the forefront of new techniques, ideas and concepts that ultimately will improve our understanding of mountain belts and rift systems. Eventually more than anything, his motivation and enthusiasm were a constant source of inspiration.

What we learn from eclipsing binaries in the ultraviolet

NASA Technical Reports Server (NTRS)

Guinan, Edward F.

1990-01-01

Recent results on stars and stellar physics from IUE (International Ultraviolet Explorer) observations of eclipsing binaries are discussed. Several case studies are presented, including V 444 Cyg, Aur stars, V 471 Tau and AR Lac. Topics include stellar winds and mass loss, stellar atmospheres, stellar dynamos, and surface activity. Studies of binary star dynamics and evolution are discussed. The progress made with IUE in understanding the complex dynamical and evolutionary processes taking place in W UMa-type binaries and Algol systems is highlighted. The initial results of intensive studies of the W UMa star VW Cep and three representative Algol-type binaries (in different stages of evolution) focused on gas flows and accretion, are included. The future prospects of eclipsing binary research are explored. Remaining problems are surveyed and the next challenges are presented. The roles that eclipsing binaries could play in studies of stellar evolution, cluster dynamics, galactic structure, mass luminosity relations for extra galactic systems, cosmology, and even possible detection of extra solar system planets using eclipsing binaries are discussed.

Improving Food Safety by Understanding the Evolution of Egg-contaminating Salmonella Enteritidis

USDA-ARS?s Scientific Manuscript database

Improving Food Safety by Understanding the Evolution of Egg-contaminating Salmonella Enteritidis Jean Guard, Veterinary Medical Officer U. S. Department of Agriculture, Athens, GA USA (jean.guard@ars.usda.gov) The curious case of egg contamination by Salmonella enterica serovar Enteritidis S. ...

Animal Foraging and the Evolution of Goal-Directed Cognition

ERIC Educational Resources Information Center

Hills, Thomas T.

2006-01-01

Foraging-and feeding-related behaviors across eumetazoans share similar molecular mechanisms, suggesting the early evolution of an optimal foraging behavior called area-restricted search (ARS), involving mechanisms of dopamine and glutamate in the modulation of behavioral focus. Similar mechanisms in the vertebrate basal ganglia control motor…

Exploring the links between volcano flank collapse and magma evolution: Fogo oceanic shield volcano, Cape Verde

NASA Astrophysics Data System (ADS)

Cornu, Melodie-Neige; Paris, Raphael; Doucelance, Regis; Bachelery, Patrick; Guillou, Hervé

2017-04-01

Mass wasting of oceanic shield volcanoes is largely documented through the recognition of collapse scars and submarine debris fans. However, it is actually difficult to infer the mechanisms controlling volcano flank failures that potentially imply tens to hundreds of km3. Studies coupling detailed petrological and geochemical analyses of eruptive products hold clues for better understanding the relationships between magma sources, the plumbing system, and flank instability. Our study aims at tracking potential variations of magma source, storage and transport beneath Fogo shield volcano (Cape Verde) before and after its major flank collapse. We also provide a geochronological framework of this magmatic evolution through new radiometric ages (K-Ar and Ar-Ar) of both pre-collapse and post-collapse lavas. The central part of Fogo volcanic edifice is truncated by an 8 km-wide caldera opened to the East, corresponding to the scar of the last flank collapse (Monte Amarelo collapse, Late Pleistocene, 150 km3). Lavas sampled at the base of the scar (the so-called Bordeira) yielded ages between 158 and 136 ka. The age of the collapse is constrained between 68 ka (youngest lava flow cut by the collapse scar) and 59 ka (oldest lava flow overlapping the scar). The collapse walls display a complex structural, intrusive and eruptive history. Undersaturated volcanism (SiO2<43%) is surprisingly dominated by explosive products such as ignimbrites, with 4 major explosive episodes representing half of the volume of the central edifice. This explosive record onshore is correlated with the offshore record of mafic tephra and turbidites (Eisele et al., 2015). Major elements analyses indicate that the pre-collapse lavas are significantly less differentiated than post-collapse lavas, with a peak of alkalis at the collapse. Rare-earth elements concentration decreases with time, with a notable positive anomaly before the collapse. The evolution of the isotopic ratios (Sr, Nd and Pb) through time displays unusual V-shaped profiles centered around the collapse. The occurrence of the Monte Amarelo collapse is thus not disconnected from the magmatic evolution, both at the crustal and mantellic levels. Our results also point out the importance and relative frequency of explosive eruptions of undersaturated magmas at Fogo volcano.

An Early Jurassic 40Ar/39Ar Age for the Puchezh-Katunki Impact Structure (Russia) — No Causal Link to an Extinction Event

NASA Astrophysics Data System (ADS)

Holm-Alwmark, S.; Alwmark, C.; Lindström, S.; Ferrière, L.; Scherstén, A.; Masaitis, V. L.; Mashchak, M. S.; Naumov, M. V.

2016-08-01

We propose a revised age of 192.0 ± 0.8 Ma for the formation of the Puchezh-Katunki impact structure, Russia, based on 40Ar/39Ar step-heating analyses of five impact melt rock samples. This age does not correlate with any known extinction event.

Synthesis of geological, structural, and geochronologic data (phase V, deliverable 53): Chapter A in Second projet de renforcement institutionnel du secteur minier de la République Islamique de Mauritanie (PRISM-II)

USGS Publications Warehouse

Bradley, Dwight C.; O'Sullivan, Paul; Cosca, Michael A.; Motts, Holly; Horton, John D.; Taylor, Cliff D.; Beaudoin, Georges; Lee, Gregory K.; Ramezani, Jahan; Bradley, Daniel N.; Jones, James V.; Bowring, Samuel

2015-01-01

This report is a companion to the new Geologic Map of Mauritania (Bradley and others, 2015; referred to herein as “Deliverable 51”) and the new Structural Geologic Map of Mauritania (Bradley and others, 2015a; referred to herein as “Deliverable 52”). Section 1 contains explanatory information for these two digital maps. Section 2 covers the analytical methods used in obtaining new U-Pb ages from 9 igneous rock samples, new detrital zircon ages from 40 sedimentary or metasedimentary rock samples, and new 40Ar/39Ar ages from 12 samples of metamorphic rocks and veins. Sections 3 through 6 present the new geochronological results, organized by region. In Section 7, we discuss implications of the new ages for the regional geology and discuss problematic results. Finally, in Section 8, we summarize the geology and tectonic evolution of Mauritania in narrative form, drawing on new and published information, in the context of global tectonics. The report is being released in both English and French. In both versions, we use the French-language names for formal stratigraphic units.

Evolution of Metal(Loid) Binding Sites in Transcriptional Regulators

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ordonez, E.; Thiyagarajan, S.; Cook, J.D.

2009-05-22

Expression of the genes for resistance to heavy metals and metalloids is transcriptionally regulated by the toxic ions themselves. Members of the ArsR/SmtB family of small metalloregulatory proteins respond to transition metals, heavy metals, and metalloids, including As(III), Sb(III), Cd(II), Pb(II), Zn(II), Co(II), and Ni(II). These homodimeric repressors bind to DNA in the absence of inducing metal(loid) ion and dissociate from the DNA when inducer is bound. The regulatory sites are often three- or four-coordinate metal binding sites composed of cysteine thiolates. Surprisingly, in two different As(III)-responsive regulators, the metalloid binding sites were in different locations in the repressor, andmore » the Cd(II) binding sites were in two different locations in two Cd(II)-responsive regulators. We hypothesize that ArsR/SmtB repressors have a common backbone structure, that of a winged helix DNA-binding protein, but have considerable plasticity in the location of inducer binding sites. Here we show that an As(III)-responsive member of the family, CgArsR1 from Corynebacterium glutamicum, binds As(III) to a cysteine triad composed of Cys{sup 15}, Cys{sup 16}, and Cys{sup 55}. This binding site is clearly unrelated to the binding sites of other characterized ArsR/SmtB family members. This is consistent with our hypothesis that metal(loid) binding sites in DNA binding proteins evolve convergently in response to persistent environmental pressures.« less

Argon-40 as a Constraint on the Volcanic Degassing History and Thermal Evolution of Mars

NASA Astrophysics Data System (ADS)

Kiefer, W. S.

2017-12-01

Models for the thermal and magmatic evolution of Mars are strongly controlled by the volcanic degassing of water from the interior. Water affects the mantle's viscosity and hence the vigor of convective flow. It also affects the mantle's solidus temperature and hence the rate of magma generation. This set of coupled feedback loops affects both the volume of crustal production and the possible production of a magnetic field via a core dynamo (e.g., Sandu and Kiefer, GRL 2012, 2011GL050225). Volcanic degassing also affects other atmospheric components. Argon-40, which is a radioactive decay product of potassium-40, can potentially serve as an additional test of thermal evolution models. As a noble gas, 40Ar is highly incompatible in mantle and crustal rocks and thus tends to degas to the atmosphere during magmatic events. 40K has a half-life of 1.25 billion years and thus 40Ar measures volcanic degassing throughout martian history. It is relatively insensitive to atmospheric loss processes during the earliest part of solar system history, and long-term loss of 40Ar from the atmosphere can be estimated from fractionation of the 38Ar/36Ar ratio relative to solar (MAVEN results indicate that 66% of 36Ar has been lost from the martian atmosphere, Jakosky et al., Science 2017). The noble gas composition of the martian atmosphere has been measured both in situ using the SAM mass spectrometer on NASA's Curiosity rover and via measurements of trapped atmospheric gases in martian meteorites. One important application of 40Ar degassing models is as a constraint on the bulk silicate composition of Mars. The most widely accepted composition model for Mars has a potassium abundance of 305-310 ppm, slightly higher than the bulk silicate Earth. However, several other models assume a bulk silicate Mars K of up to 1040 ppm. Preliminary Ar degassing modeling favors K in the lower half of this range, consistent with results from long-term and present-day magma production models. Constraints on the bulk silicate K abundance are important to understanding the thermal and magmatic history of Mars because 40K is a radioactive heat source. In addition, the expected abundances of K and Na are correlated and elevated values of Na act to lower the peridotite solidus and thus to enhance the magma production rate (Kiefer et al., Geochimica, 2015).

Time-dependent evolution of functional vs. remodeling signaling in induced pluripotent stem cell-derived cardiomyocytes and induced maturation with biomechanical stimulation.

PubMed

Jung, Gwanghyun; Fajardo, Giovanni; Ribeiro, Alexandre J S; Kooiker, Kristina Bezold; Coronado, Michael; Zhao, Mingming; Hu, Dong-Qing; Reddy, Sushma; Kodo, Kazuki; Sriram, Krishna; Insel, Paul A; Wu, Joseph C; Pruitt, Beth L; Bernstein, Daniel

2016-04-01

Human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) are a powerful platform for uncovering disease mechanisms and assessing drugs for efficacy/toxicity. However, the accuracy with which hiPSC-CMs recapitulate the contractile and remodeling signaling of adult cardiomyocytes is not fully known. We used β-adrenergic receptor (β-AR) signaling as a prototype to determine the evolution of signaling component expression and function during hiPSC-CM maturation. In "early" hiPSC-CMs (less than or equal to d 30), β2-ARs are a primary source of cAMP/PKA signaling. With longer culture, β1-AR signaling increases: from 0% of cAMP generation at d 30 to 56.8 ± 6.6% by d 60. PKA signaling shows a similar increase: 15.7 ± 5.2% (d 30), 49.8 ± 0.5% (d 60), and 71.0 ± 6.1% (d 90). cAMP generation increases 9-fold from d 30 to 60, with enhanced coupling to remodeling pathways (e.g., Akt and Ca(2+)/calmodulin-dependent protein kinase type II) and development of caveolin-mediated signaling compartmentalization. By contrast, cardiotoxicity induced by chronic β-AR stimulation, a major component of heart failure, develops much later: 5% cell death at d 30vs 55% at d 90. Moreover, β-AR maturation can be accelerated by biomechanical stimulation. The differential maturation of β-AR functionalvs remodeling signaling in hiPSC-CMs has important implications for their use in disease modeling and drug testing. We propose that assessment of signaling be added to the indices of phenotypic maturation of hiPSC-CMs.-Jung, G., Fajardo, G., Ribeiro, A. J. S., Kooiker, K. B., Coronado, M., Zhao, M., Hu, D.-Q., Reddy, S., Kodo, K., Sriram, K., Insel, P. A., Wu, J. C., Pruitt, B. L., Bernstein, D. Time-dependent evolution of functionalvs remodeling signaling in induced pluripotent stem cell-derived cardiomyocytes and induced maturation with biomechanical stimulation. © FASEB.

Successive Homologous Coronal Mass Ejections Driven by Shearing and Converging Motions in Solar Active Region NOAA 12371

NASA Astrophysics Data System (ADS)

Vemareddy, P.

2017-08-01

We study the magnetic field evolution in AR 12371, related to its successive eruptive nature. During the disk transit of seven days, the active region (AR) launched four sequential fast coronal mass ejections (CMEs), which are associated with long duration M-class flares. Morphological study delineates a pre-eruptive coronal sigmoid structure above the polarity inversion line (PIL) similar to Moore et al.’s study. The velocity field derived from tracked magnetograms indicates persistent shear and converging motions of polarity regions about the PIL. While these shear motions continue, the crossed arms of two sigmoid elbows are being brought to interaction by converging motions at the middle of the PIL, initiating the tether-cutting reconnection of field lines and the onset of the CME explosion. The successive CMEs are explained by a cyclic process of magnetic energy storage and release referred to as “sigmoid-to-arcade-to-sigmoid” transformation driven by photospheric flux motions. Furthermore, the continued shear motions inject helicity flux with a dominant negative sign, which contributes to core field twist and its energy by building a twisted flux rope (FR). After a limiting value, the excess coronal helicity is expelled by bodily ejection of the FR, which is initiated by some instability as realized by intermittent CMEs. This AR is in contrast with the confined AR 12192 with a predominant negative sign and larger helicity flux, but much weaker (-0.02 turns) normalized coronal helicity content. While predominant signed helicity flux is a requirement for CME eruption, our study suggests that the magnetic flux normalized helicity flux is a necessary condition accommodating the role of background flux and appeals to a further study of a large sample of ARs.

Successive Homologous Coronal Mass Ejections Driven by Shearing and Converging Motions in Solar Active Region NOAA 12371

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vemareddy, P., E-mail: vemareddy@iiap.res.in

We study the magnetic field evolution in AR 12371, related to its successive eruptive nature. During the disk transit of seven days, the active region (AR) launched four sequential fast coronal mass ejections (CMEs), which are associated with long duration M-class flares. Morphological study delineates a pre-eruptive coronal sigmoid structure above the polarity inversion line (PIL) similar to Moore et al.’s study. The velocity field derived from tracked magnetograms indicates persistent shear and converging motions of polarity regions about the PIL. While these shear motions continue, the crossed arms of two sigmoid elbows are being brought to interaction by convergingmore » motions at the middle of the PIL, initiating the tether-cutting reconnection of field lines and the onset of the CME explosion. The successive CMEs are explained by a cyclic process of magnetic energy storage and release referred to as “sigmoid-to-arcade-to-sigmoid” transformation driven by photospheric flux motions. Furthermore, the continued shear motions inject helicity flux with a dominant negative sign, which contributes to core field twist and its energy by building a twisted flux rope (FR). After a limiting value, the excess coronal helicity is expelled by bodily ejection of the FR, which is initiated by some instability as realized by intermittent CMEs. This AR is in contrast with the confined AR 12192 with a predominant negative sign and larger helicity flux, but much weaker (−0.02 turns) normalized coronal helicity content. While predominant signed helicity flux is a requirement for CME eruption, our study suggests that the magnetic flux normalized helicity flux is a necessary condition accommodating the role of background flux and appeals to a further study of a large sample of ARs.« less

Crystallization Age and Impact Resetting of Ancient Lunar Crust from the Descartes Terrane

NASA Technical Reports Server (NTRS)

Norman, M. D.; Borg, L. E.; Nyquist, L. E.; Bogard, D. D.

2002-01-01

Lunar ferroan anorthosites (FANs) are relics of an ancient, primary feldspathic crust that is widely believed to have crystallized from a global magma ocean. Compositions and ages of FANs provide fundamental information about the origin and magmatic evolution of the Moon, while the petrology and thermal history of lunar FANs illustrate the structure and impact history of the lunar crust. Here we report petrologic, geochemical, and isotopic (Nd-Sr-Ar) studies of a ferroan noritic anorthosite clast from lunar breccia 67215 to improve our understanding of the composition, age, and thermal history of the Moon.

A new Triassic shortening-extrusion tectonic model for Central-Eastern Asia: Structural, geochronological and paleomagnetic investigations in the Xilamulun Fault (North China)

NASA Astrophysics Data System (ADS)

Zhao, Pan; Faure, Michel; Chen, Yan; Shi, Guanzhong; Xu, Bei

2015-09-01

At the northern margin of the North China Block (NCB), the Xilamulun Fault (XMF) is a key belt to decipher the tectonic evolution of Central-Eastern Asia, as it records the Paleozoic final closure of the Paleo-Asian Ocean, and localizes a Late Triassic intracontinental deformation. In this study, structural analysis, 40Ar-39Ar dating, and paleomagnetic studies were performed to investigate the kinematics of the XMF and to further discuss its Triassic geodynamic significance in the Central-Eastern Asia framework after the Paleozoic Central Asian Orogenic evolution. The structural analyses reveal two phases of ductile deformation. The first one (D1), which displays N-verging and E-W trending folds, is related to the Early Paleozoic collisional event between the NCB and the Songliao-Hunshandake Block (SHB). The second phase (D2) displays a high-angle foliation and a pervasive sub-horizontal E-W stretching lineation with kinematic criteria indicative of dextral strike-slip shearing. The 40Ar-39Ar dating on mylonitic granite places the main shearing event around 227-209 Ma. This D2 shearing is coeval with that of the dextral strike-slip Bayan Obo-Chifeng Fault (BCF) and the Chicheng-Fengning-Longhua Fault to the south, which together constitute a dextral shearing fault system on the northern margin of the NCB during the Late Triassic. The paleomagnetic study performed on the Middle Permian Guangxingyuan pluton, located between the XMF and BCF, documents a local clockwise rotation of this pluton with respect to the NCB and SHB. Our multidisciplinary study suggests an NNW-SSE shortening and strike-slip shearing dominated tectonic setting on the northern margin of the NCB during the Late Triassic. Combining the contemporaneous dextral strike-slip movements of the XMF and BCF in northern China and the sinistral strike-slip movement of East Gobi Fault (EGF) in southeastern Mongolia with the large-scale tectonic framework, a Late Triassic NNW-SSE shortening-eastward extrusion tectonic model for Central-Eastern Asia is firstly proposed. The NNW-SSE shortening results in the eastward extrusion of the continental wedge bounded by the BCF and EGF, which is accommodated by the different kinematic patterns of the southern (XMF and BCF) and northwestern (EGF) bounding faults. This shortening-extrusion tectonic framework is tentatively interpreted as the result of the far field forces associated with three Late Triassic lithosphere-scale convergences in East Asia: i) northward intracontinental subduction between the NCB and South China Block, ii) collision of the Qiangtang Block with the Qaidam Block, and iii) southward subduction of the Mongol-Okhotsk Ocean beneath the Mongolia Block.

A new Triassic shortening-extrusion tectonic model for Central-EasternAsia: Structural, geochronological and paleomagnetic investigations in the Xilamulun Fault (North China)

NASA Astrophysics Data System (ADS)

Zhao, Pan; Faure, Michel; Chen, Yan; Xu, Bei

2017-04-01

At the northern margin of the North China Block (NCB), the Xilamulun Fault (XMF) is a key belt to decipher the tectonic evolution of Central-Eastern Asia, as it records the Paleozoic final closure of the Paleo-Asian Ocean, and localizes a Late Triassic intracontinental deformation. In this study, structural analysis, 40Ar-39Ar dating, and paleomagnetic studies were performed to investigate the kinematics of the XMF and to further discuss its Triassic geodynamic significance in the Central-Eastern Asia framework after the Paleozoic Central Asian Orogenic evolution. The structural analyses reveal two phases of ductile deformation. The first one (D1), which displays N-verging and E-W trending folds, is related to the Early Paleozoic collisional event between the NCB and the Songliao-Hunshandake Block (SHB). The second phase (D2) displays a high-angle foliation and a pervasive sub-horizontalE-W stretching lineation with kinematic criteria indicative of dextral strike-slip shearing. The 40Ar-39Ar dating on mylonitic granite places the main shearing event around 227-209 Ma. This D2 shearing is coeval with that of the dextral strike-slip Bayan Obo-Chifeng Fault (BCF) and the Chicheng-Fengning-Longhua Fault to the south, which together constitute a dextral shearing fault system on the northern margin of the NCB during the Late Triassic. The paleomagnetic study performed on the Middle Permian Guangxingyuan pluton, located between the XMF and BCF, documents a local clockwise rotation of this pluton with respect to the NCB and SHB. Our multidisciplinary study suggests anNNW-SSE shortening and strike-slip shearing dominated tectonic setting on the northern margin of the NCB during the Late Triassic. Combining the contemporaneous dextral strike-slip movements of the XMF and BCF in northern China and the sinistral strike-slip movement of East Gobi Fault (EGF) in southeastern Mongolia with the large-scale tectonic framework, a Late Triassic NNW-SSE shortening-eastward extrusion tectonic model for Central-Eastern Asia is firstly proposed. The NNW-SSE shortening results in the eastward extrusion of the continental wedge bounded by the BCF and EGF, which is accommodated by the different kinematic patterns of the southern (XMF and BCF) and northwestern (EGF) bounding faults. This shortening-extrusion tectonic framework is tentatively interpreted as the result of the far field forces associated with three Late Triassic lithosphere-scale convergences in East Asia: i)northward intracontinental subduction between the NCB and South China Block, ii)collision of the Qiangtang Block with the Qaidam Block, and iii)southward subduction of the Mongol-Okhotsk Ocean beneath the Mongolia Block.

40Ar/39Ar geochronology of submarine Mauna Loa volcano, Hawaii

NASA Astrophysics Data System (ADS)

Jicha, Brian R.; Rhodes, J. Michael; Singer, Brad S.; Garcia, Michael O.

2012-09-01

New geochronologic constraints refine the growth history of Mauna Loa volcano and enhance interpretations of the petrologic, geochemical, and isotopic evolution of Hawaiian magmatism. We report results of 40Ar/39Ar incremental heating experiments on low-K, tholeiitic lavas from the 1.6 km high Kahuku landslide scarp cutting Mauna Loa's submarine southwest rift zone, and from lavas in a deeper section of the rift. Obtaining precise40Ar/39Ar ages from young, tholeiitic lavas containing only 0.2-0.3 wt.% K2O is challenging due to their extremely low radiogenic 40Ar contents. Analyses of groundmass from 45 lavas yield 14 new age determinations (31% success rate) with plateau and isochron ages that agree with stratigraphic constraints. Lavas collected from a 1250 m thick section in the landslide scarp headwall were all erupted around 470 ± 10 ka, implying an extraordinary period of accumulation of ˜25 mm/yr, possibly correlating with the peak of the shield-building stage. This rate is three times higher than the estimated vertical lava accumulation rate for shield-building at Mauna Kea (8.6 ± 3.1 mm/yr) based on results from the Hawaii Scientific Drilling Project. Between ˜470 and 273 ka, the lava accumulation rate along the southwest rift zone decreased dramatically to ˜1 mm/yr. We propose that the marked reduction in lava accumulation rate does not mark the onset of post-shield volcanism as previously suggested, but rather indicates the upward migration of the magma system as Mauna Loa evolved from a submarine stage of growth to one that is predominantly subaerial, thereby cutting off supply to the distal rift zone. Prior to ˜250 ka, lavas with Loihi-like isotopic signatures were erupted along with lavas having typical Mauna Loa values, implying greater heterogeneity in the plume source earlier in Mauna Loa's growth. In addition to refining accumulation rates and the isotopic evolution of the lavas erupted along the southwest rift zone, our new40Ar/39Ar results constrain the eruption of the Ninole Basalts from 227 to 108 ka and provide maximum estimates on the timing of the Ka Lae and South Kona landslides.

Chemistry and chronology of magmatic processes, Central Kenya Peralkaline province, East African Rift

NASA Astrophysics Data System (ADS)

Anthony, E.; Deino, A. L.; White, J. C.; Omenda, P. A.

2014-12-01

We report here a synthesis of the geochemistry of magma evolution correlated with 40Ar/39Ar, 14 C, and U-series chronology for volcanoes in the Central Kenya Peralkaline Province (CKPP). The volcanic centers - Menengai, Eburru, Olkaria, Longonot, and Suswa - are at the apex of the Kenya Dome, and consist of trachyte, phonolite, comendite, and pantellerite. These volcanic centers are within the graben of the EARS and are characterized by a shield-building phase followed by caldera collapse and subsequent post-caldera eruptions. Geochemical modeling demonstrates that the magmas are the result of fractional crystallization of alkali basaltic magmas and magma mixing. Longonot and Suswa have the most chronologic data -14 C, Ar/Ar and U-series - and they show that the youngest eruptions have 230 Th/232Th of 0.8, which was inherited from the magma system prior to eruption. Subsequent changes in 230 Th/232 Th are due to post-eruptive decay of 230 Th and correlate well with 14 C and Ar/Ar.

Combined 40Ar/39Ar and Fission-Track study of the Freetown Layered Igneous Complex, Freetown, Sierra Leone, West Africa: Implications for the Initial Break-up of Pangea to form the Central Atlantic Ocean and Insight into the Post-rift Evolution of the Sie

NASA Astrophysics Data System (ADS)

Barrie, Ibrahim; Wijbrans, Jan; Andriessen, Paul; Beunk, Frank; Strasser-King, Victor; Fode, Daniel

2010-05-01

Sierra Leone lies within the south-western part of the West African Craton and comprises two major Archaean structural divisions: a low-grade granite-greenstone terrane characterised by N-S striking structures and a NW-SE striking highly metamorphosed belt of strained rocks that form the coastal margin of the craton. Intruded into the belt is the Freetown Layered Igneous Complex (FLIC), a tholeiitic magamtic body emplaced prior to or during the break-up of Pangea to form the Central Atlantic Ocean and, forming today the high ground of the coastal outline of Sierra Leone which is one of the most distinctive features on the West African coast. The break-up of Pangaea to form the Central Atlantic and its passive margins began in the Early Jurassic. Geo-tectonically, the break-up was particularly characterised by the formation of the Central Atlantic Magmatic Province (CAMP), covering once-contiguous parts of North America, Europe, Africa and South America. The FLIC forming part of the heart of CAMP is the largest single layered igneous intrusive yet known on either side of the Central Atlantic, measuring on surface, 65 x 14 x 7 km. Geophysical investigations indicate that the intrusion extends offshore to a depth of about 20 km. Geologically the Complex is a rhythmically layered elongated ultramafic-mafic lopolith divisible into 4 major zones each comprising repeated sequences of troctolitic, gabbroic and anorthositic rocks. An idealised unit of layering is from base upwards: dunite, troctolite, olivine-gabbro, leuco-gabbro, gabbro-norite and anorthosite cumulates. 40Ar-39Ar age spectra and 40Ar/36Ar versus 39Ar/36Ar isochron plots obtained by stepwise-heating experiments on plagioclases, biotites and amphiboles from troctolites, olivine-gabbros, gabbro-norites and anorthosites of the four zones yield plateau and isochron ages that seem to depict the cooling history of the Complex after emplacement. The biotites and some of the plagioclases and amphiboles give very good plateaus that range from 196.3 ± 3 Ma to 232.1 ± 9 Ma with the best-fit isochron plots showing a range from 193.3± 10 Ma to 234.1 ± 11 Ma. Because these dates represent cooling ages, we interpret them as representing a minimum intrusion-age of the Complex implying that its true emplacement age might be somewhat older than 230 Ma. Given that most established CAMP ages revolve around 200 Ma or younger, we hypothesise that FLIC represents a hitherto unknown pre-CAMP magmatic event that might have thermally triggered the initial break-up of Pangaea to form the Central Atlantic. This view is consistent with field-observations that the Complex is cross-cut by predominantly coast-parallel mafic dykes attributed to the CAMP dyke-swarm. To ascertain the hypothesis, we are currently carrying out U-Pb zircon dating to establish, precisely, the true emplacement age of the Complex. The Fission-track ages vary from 91.7 ± 7 Ma to 114.6 ± 9 Ma. This age range shows that after emplacement and crystallisation, the FLIC underwent an extremely slow cooling for a long period of time. This in turn implies that after the break-up of Pangea to form, in part, the Sierra Leone margin, a late and slow uplift (Erosion/denudation) that took place during the Cretaceous was a very important geological process that characterised the post-rift evolution of the margin. References: Barrie, I.J., P.A.M. Andriessen, F.F. Beunk, J.R. Wijbrans, V.E.H. Strasser-King, D.V.A.Fode. (2006). Tectonothermal Evolution of the Sierra Leone Passive Continental Margin, West Africa: Constraints from Thermochronology. Geochemica et Cosmochemica Acta 70 (18): A36- A36 Suppl. S Aug-Sep 2006. Marzoli, A., P.R. Renne, E.M. Piccirillo, M. Ernesto, G. Bellieni, A De Min. (1999). Extensive 200-Million-Year-Old Continental Flood Basalts of the Central Atlantic Magmatic Province. Science284: 616-618. McHone, J.G. (2000). Non-plume magmatism and rifting during the opening of the central Atlantic Ocean. Tectonophysics, 316: 287-296. Umeji, A.C. (1983). Geochemistry and Mineralogy of the Freetown Layered Basic Igneous Complex of Sierra Leone. Chemical Geology, 39: 17-38. Wells, M.K. (1962). Structure and Petrology of the Freetown Layered Basic Complex of Sierra Leone. Overseas Geol. Mineral. Res. Bull. Suppl., 4, 115 pp. Williams, H.R. (1986). The Archaean Kaila Group of Western Sierra Leone: Geology and Relations with adjacent Granite-Greenstone Terrane. Precambrian Research, 38: 201-213.

Thomson scattering diagnostics of decay processes of Ar/SF6 gas-blast arcs confined by a nozzle

NASA Astrophysics Data System (ADS)

Tomita, Kentaro; Gojima, Daisuke; Nagai, Kazuhiko; Uchino, Kiichiro; Kamimae, Ryo; Tanaka, Yasunori; Suzuki, Katsumi; Iijima, Takanori; Uchii, Toshiyuki; Shinkai, Takeshi

2013-09-01

Because of its instability, it is difficult to measure precisely the electron density (ne) of a long-gap decaying arc discharge in a circuit breaker. However, it is well known that it is an essential parameter for the determination of success or failure of the current interruption in a circuit breaker. In this paper, the spatiotemporal evolutions of the electron density were successfully measured in decaying SF6 gas-blast arc discharges formed with a long gap (50 mm) in a confined nozzle using laser Thomson scattering. Pure Ar gas and an 80%Ar/20%SF6 mixture gas were used as the arc quenching media at atmospheric pressure. After reducing the current to zero, both the measured ne and arc radius in the Ar/SF6 gas arc clearly decayed more rapidly than in the pure Ar gas arc.

Potassium-argon (argon-argon), structural fabrics

USGS Publications Warehouse

Cosca, Michael A.; Rink, W. Jack; Thompson, Jereon

2014-01-01

Definition: 40Ar/39Ar geochronology of structural fabrics: The application of 40Ar/39Ar methods to date development of structural fabrics in geologic samples. Introduction: Structural fabrics develop during rock deformation at variable pressures (P), temperatures (T), fluid compositions (X), and time (t). Structural fabrics are represented in rocks by features such as foliations and shear zones developed at the mm to km scale. In ideal cases, the P-T-X history of a given structural fabric can be constrained using stable isotope, cation exchange, and/or mineral equilibria thermobarometry (Essene 1989). The timing of structural fabric development can be assessed qualitatively using geologic field observations or quantitatively using isotope-based geochronology. High-precision geochronology of the thermal and fluid flow histories associated with structural fabric development can answer fundamental geologic questions including (1) when hydrothermal fluids transported and deposited ore minerals, ...

Proton scattering from the unstable nuclei 30S and 34Ar: structural evolution along the sulfur and argon isotopic chains*

NASA Astrophysics Data System (ADS)

Khan, E.; Suomijärvi, T.; Blumenfeld, Y.; Van Giai, Nguyen; Alamanos, N.; Auger, F.; Bauge, E.; Beaumel, D.; Delaroche, J. P.; Delbourgo-Salvador, P.; Drouart, A.; Fortier, S.; Frascaria, N.; Gillibert, A.; Girod, M.; Jouanne, C.; Kemper, K. W.; Lagoyannis, A.; Lapoux, V.; Lépine-Szily, A.; Lhenry, I.; Libert, J.; Maréchal, F.; Maison, J. M.; Musumarra, A.; Ottini-Hustache, S.; Piattelli, P.; Pita, S.; Pollacco, E. C.; Roussel-Chomaz, P.; Santonocito, D.; Sauvestre, J. E.; Scarpaci, J. A.; Zerguerras, T.

2001-11-01

Proton elastic and inelastic scattering angular distributions to the 2 1+ and 3 1- collective states of the proton-rich nuclei 30S and 34Ar were measured at 53 MeV/ A and 47 MeV/ A, respectively, using secondary beams from the GANIL facility and the MUST silicon strip detector array. Data for the stable 32S nucleus were also obtained at 53 MeV/ A for comparison. A phenomenological analysis was used to deduce the deformation parameters βp,p' for the low-lying collective excitations. A microscopic analysis was performed by generating matter and transition densities from self-consistent QRPA calculations. Configuration mixing calculations based on a collective Bohr Hamiltonian were also performed. DWBA and coupled-channel calculations using microscopic optical potentials built from these densities and the JLM interaction are compared to the data. There is no indication for the presence of proton skins in these nuclei. The microscopic calculations are extended to the even-even sulfur and argon isotopes from A=30 to A=40, and A=34 to A=44, respectively, and compared to available experimental results. On the basis of this analysis predictions are made for the 42,44S and 46Ar nuclei concerning ground state and transition densities.

Alpine extensional detachment tectonics in the Grande Kabylie metamorphic core complex of the Maghrebides (northern Algeria)

NASA Astrophysics Data System (ADS)

Saadallah, A.; Caby, R.

1996-12-01

The Maghrebides are part of the peri-Mediterranean Alpine orogen. They expose in their inner zone inliers of high-grade crystalline rocks surrounded by Oligo-Miocene and younger Miocene cover. Detailed mapping coupled with structural and petrological investigations in the Grande Kabylie massif, and the reinterpretation of the available geochronological data, allow us to refute the traditional concept of rigid behaviour of this massif during Alpine events. We show that the dome geometry, the kinematic and metamorphic evolutions and the age pattern are typical of metamorphic core complexes exhumed by extension. A major low-angle detachment fault defined by mylonites and by younger cataclasites has been traced in the massif. The upper unit encompasses pre-Permian phyllites with Variscan {40Ar }/{39Ar } cooling ages, capped by unconformable Mesozoic to Tertiary cover of the Calcareous Range, both mainly affected by extensive Tertiary brittle deformation and normal faulting. The lower unit exposes in two half-domes a continuous tectonic pile, 6-8 km thick, of amphibolite facies rocks and orthogneisses affected by syndashmetamorphic ductile deformation, devoid of retrogression. The regular increase of paleotemperature downward and the {40Ar }/{39Ar } plateau ages around 80 Ma suggest that the high-temperature foliation and associated WNW-directed shear under a high geothermal gradient relate to extensional tectonics developed during Mesozoic lithospheric thinning of the Variscan south European margin. To the north, the Sidi Alli Bou Nab massif exposes another crustal section affected throughout by WNW-directed extensional shear during {HP }/{HT } syndashmetamorphic thinning and with overall {40Ar }/{39Ar } plateau ages of 25 Ma. The Eocene oblique collisional event responsible for crustal thickening was totally overprinted by this new extensional regime, synchronous with the beginning of the opening of the Western Mediterranean oceanic basin. This was also coeval with south-directed thrusting of foreland nappes to the south. Post-Miocene tectonic events cause significant overprinting.

Confirming the key role of Ar+ ion bombardment in the growth feature of nanostructured carbon materials by PECVD

NASA Astrophysics Data System (ADS)

Liu, Yulin; Lin, Jinghuang; Jia, Henan; Chen, Shulin; Qi, Junlei; Qu, Chaoqun; Cao, Jian; Feng, Jicai; Fei, Weidong

2017-11-01

In order to confirm the key role of Ar+ ion bombardment in the growth feature of nanostructured carbon materials (NCMs), here we report a novel strategy to create different Ar+ ion states in situ in plasma enhanced chemical vapor deposition (PECVD) by separating catalyst film from the substrate. Different bombardment environments on either side of the catalyst film were created simultaneously to achieve multi-layered structural NCMs. Results showed that Ar+ ion bombardment is crucial and complex for the growth of NCMs. Firstly, Ar+ ion bombardment has both positive and negative effects on carbon nanotubes (CNTs). On one hand, Ar+ ions can break up the graphic structure of CNTs and suppress thin CNT nucleation and growth. On the other hand, Ar+ ion bombardment can remove redundant carbon layers on the surface of large catalyst particles which is essential for thick CNTs. As a result, the diameter of the CNTs depends on the Ar+ ion state. As for vertically oriented few-layer graphene (VFG), Ar+ ions are essential and can even convert the CNTs into VFG. Therefore, by combining with the catalyst separation method, specific or multi-layered structural NCMs can be obtained by PECVD only by changing the intensity of Ar+ ion bombardment, and these special NCMs are promising in many fields.

Confirming the key role of Ar+ ion bombardment in the growth feature of nanostructured carbon materials by PECVD.

PubMed

Liu, Yulin; Lin, Jinghuang; Jia, Henan; Chen, Shulin; Qi, Junlei; Qu, Chaoqun; Cao, Jian; Feng, Jicai; Fei, Weidong

2017-11-24

In order to confirm the key role of Ar + ion bombardment in the growth feature of nanostructured carbon materials (NCMs), here we report a novel strategy to create different Ar + ion states in situ in plasma enhanced chemical vapor deposition (PECVD) by separating catalyst film from the substrate. Different bombardment environments on either side of the catalyst film were created simultaneously to achieve multi-layered structural NCMs. Results showed that Ar + ion bombardment is crucial and complex for the growth of NCMs. Firstly, Ar + ion bombardment has both positive and negative effects on carbon nanotubes (CNTs). On one hand, Ar + ions can break up the graphic structure of CNTs and suppress thin CNT nucleation and growth. On the other hand, Ar + ion bombardment can remove redundant carbon layers on the surface of large catalyst particles which is essential for thick CNTs. As a result, the diameter of the CNTs depends on the Ar + ion state. As for vertically oriented few-layer graphene (VFG), Ar + ions are essential and can even convert the CNTs into VFG. Therefore, by combining with the catalyst separation method, specific or multi-layered structural NCMs can be obtained by PECVD only by changing the intensity of Ar + ion bombardment, and these special NCMs are promising in many fields.

Geology and metallogeny of the Ar Rayn terrane, eastern Arabian shield: Evolution of a Neoproterozoic continental-margin arc during assembly of Gondwana within the East African orogen

USGS Publications Warehouse

Doebrich, J.L.; Al-Jehani, A. M.; Siddiqui, A.A.; Hayes, T.S.; Wooden, J.L.; Johnson, P.R.

2007-01-01

The Neoproterozoic Ar Rayn terrane is exposed along the eastern margin of the Arabian shield. The terrane is bounded on the west by the Ad Dawadimi terrane across the Al Amar fault zone (AAF), and is nonconformably overlain on the east by Phanerozoic sedimentary rocks. The terrane is composed of a magmatic arc complex and syn- to post-orogenic intrusions. The layered rocks of the arc, the Al Amar group (>689 Ma to ???625 Ma), consist of tholeiitic to calc-alkaline basaltic to rhyolitic volcanic and volcaniclastic rocks with subordinate tuffaceous sedimentary rocks and carbonates, and are divided into an eastern and western sequence. Plutonic rocks of the terrane form three distinct lithogeochemical groups: (1) low-Al trondhjemite-tonalite-granodiorite (TTG) of arc affinity (632-616 Ma) in the western part of the terrane, (2) high-Al TTG/adakite of arc affinity (689-617 Ma) in the central and eastern part of the terrane, and (3) syn- to post-orogenic alkali granite (607-583 Ma). West-dipping subduction along a trench east of the terrane is inferred from high-Al TTG/adakite emplaced east of low-Al TTG. The Ar Rayn terrane contains significant resources in epithermal Au-Ag-Zn-Cu-barite, enigmatic stratiform volcanic-hosted Khnaiguiyah-type Zn-Cu-Fe-Mn, and orogenic Au vein deposits, and the potential for significant resources in Fe-oxide Cu-Au (IOCG), and porphyry Cu deposits. Khnaiguiyah-type deposits formed before or during early deformation of the Al Amar group eastern sequence. Epithermal and porphyry deposits formed proximal to volcanic centers in Al Amar group western sequence. IOCG deposits are largely structurally controlled and hosted by group-1 intrusions and Al Amar group volcanic rocks in the western part of the terrane. Orogenic gold veins are largely associated with north-striking faults, particularly in and near the AAF, and are presumably related to amalgamation of the Ar Rayn and Ad Dawadimi terranes. Geologic, structural, and metallogenic characteristics of the Ar Rayn terrane are analogous to the Andean continental margin of Chile, with opposite subduction polarity. The Ar Rayn terrane represents a continental margin arc that lay above a west-dipping subduction zone along a continental block represented by the Afif composite terrane. The concentration of epithermal, porphyry Cu and IOCG mineral systems, of central arc affiliation, along the AAF suggests that the AAF is not an ophiolitic suture zone, but originated as a major intra-arc fault that localized magmatism and mineralization. West-directed oblique subduction and ultimate collision with a land mass from the east (East Gondwana?) resulted in major transcurrent displacement along the AAF, bringing the eastern part of the arc terrane to its present exposed position, juxtaposed across the AAF against a back-arc basin assemblage represented by the Abt schist of the Ad Dawadimi terrane. Our findings indicate that arc formation and accretionary processes in the Arabian shield were still ongoing into the latest Neoproterozoic (Ediacaran), to about 620-600 Ma, and lead us to conclude that evolution of the Ar Rayn terrane (arc formation, accretion, syn- to postorogenic plutonism) defines a final stage of assembly of the Gondwana supercontinent along the northeastern margin of the East African orogen. ?? 2007 Elsevier B.V. All rights reserved.

QUANTIFYING THE TOPOLOGY AND EVOLUTION OF A MAGNETIC FLUX ROPE ASSOCIATED WITH MULTI-FLARE ACTIVITIES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Kai; Guo, Yang; Ding, M. D., E-mail: dmd@nju.edu.cn

2016-06-20

Magnetic flux ropes (MFRs) play an important role in solar activities. The quantitative assessment of the topology of an MFR and its evolution is crucial for a better understanding of the relationship between the MFR and associated activities. In this paper, we investigate the magnetic field of active region (AR) 12017 from 2014 March 28–29, during which time 12 flares were triggered by intermittent eruptions of a filament (either successful or confined). Using vector magnetic field data from the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory , we calculate the magnetic energy and helicity injection in themore » AR, and extrapolate the 3D magnetic field with a nonlinear force-free field model. From the extrapolations, we find an MFR that is cospatial with the filament. We further determine the configuration of this MFR from the closed quasi-separatrix layer (QSL) around it. Then, we calculate the twist number and the magnetic helicity for the field lines composing the MFR. The results show that the closed QSL structure surrounding the MFR becomes smaller as a consequence of flare occurrence. We also find that the flares in our sample are mainly triggered by kink instability. Moreover, the twist number varies more sensitively than other parameters with the occurrence of flares.« less

Evidence for determinism in species diversification and contingency in phenotypic evolution during adaptive radiation.

PubMed

Burbrink, Frank T; Chen, Xin; Myers, Edward A; Brandley, Matthew C; Pyron, R Alexander

2012-12-07

Adaptive radiation (AR) theory predicts that groups sharing the same source of ecological opportunity (EO) will experience deterministic species diversification and morphological evolution. Thus, deterministic ecological and morphological evolution should be correlated with deterministic patterns in the tempo and mode of speciation for groups in similar habitats and time periods. We test this hypothesis using well-sampled phylogenies of four squamate groups that colonized the New World (NW) in the Late Oligocene. We use both standard and coalescent models to assess species diversification, as well as likelihood models to examine morphological evolution. All squamate groups show similar early pulses of speciation, as well as diversity-dependent ecological limits on clade size at a continental scale. In contrast, processes of morphological evolution are not easily predictable and do not show similar pulses of early and rapid change. Patterns of morphological and species diversification thus appear uncoupled across these groups. This indicates that the processes that drive diversification and disparification are not mechanistically linked, even among similar groups of taxa experiencing the same sources of EO. It also suggests that processes of phenotypic diversification cannot be predicted solely from the existence of an AR or knowledge of the process of diversification.

Evidence for determinism in species diversification and contingency in phenotypic evolution during adaptive radiation

PubMed Central

Burbrink, Frank T.; Chen, Xin; Myers, Edward A.; Brandley, Matthew C.; Pyron, R. Alexander

2012-01-01

Adaptive radiation (AR) theory predicts that groups sharing the same source of ecological opportunity (EO) will experience deterministic species diversification and morphological evolution. Thus, deterministic ecological and morphological evolution should be correlated with deterministic patterns in the tempo and mode of speciation for groups in similar habitats and time periods. We test this hypothesis using well-sampled phylogenies of four squamate groups that colonized the New World (NW) in the Late Oligocene. We use both standard and coalescent models to assess species diversification, as well as likelihood models to examine morphological evolution. All squamate groups show similar early pulses of speciation, as well as diversity-dependent ecological limits on clade size at a continental scale. In contrast, processes of morphological evolution are not easily predictable and do not show similar pulses of early and rapid change. Patterns of morphological and species diversification thus appear uncoupled across these groups. This indicates that the processes that drive diversification and disparification are not mechanistically linked, even among similar groups of taxa experiencing the same sources of EO. It also suggests that processes of phenotypic diversification cannot be predicted solely from the existence of an AR or knowledge of the process of diversification. PMID:23034709

Flow Structure and Force Variation with Aspect Ratio for a Two-Degree-of-Freedom Flapping Wing

NASA Astrophysics Data System (ADS)

Burge, Matthew; Favale, James; Ringuette, Matthew

2014-11-01

We investigate experimentally the effect of aspect ratio (AR) on the flow structure and forces of a two-degree-of-freedom flapping wing. Flapping wings are known to produce complex and unsteady vortex loop structures, and the objective is to characterize their variation with AR and how this influences the lift force. Previous results on rotating wings demonstrated that changes in AR significantly affect the three-dimensional flow structure and lift coefficient. This is primarily due to the relatively greater influence of the tip vortex for lower AR. At Reynolds number of order O(103) we test wings of AR = 2-4, values typically found in nature, with simplified planform shapes. The lift force is measured using a submersible transducer at the base of the wing in a glycerin-water mixture. The qualitative, three-dimensional vortex loop structure for different ARs is obtained using multi-color dye flow visualization. Guided by this, quantitative three-component flow information, namely vorticity, the Q-criterion, and circulation, is acquired from stereoscopic particle image velocimetry in key planes. Of interest is how these parameters and the vortex loop topology vary with AR, and their connection to features in the unsteady force signal. This work is supported by the National Science Foundation, Award Number 1336548, supervised by Dr. Dimitrios Papavassiliou.

Low oxygen and argon in the Neoproterozoic atmosphere at 815 Ma

NASA Astrophysics Data System (ADS)

Yeung, Laurence Y.

2017-12-01

The evolution of Earth's atmosphere on >106-yr timescales is tied to that of the deep Earth. Volcanic degassing, weathering, and burial of volatile elements regulates their abundance at the surface, setting a boundary condition for the biogeochemical cycles that modulate Earth's atmosphere and climate. The atmosphere expresses this interaction through its composition; however, direct measurements of the ancient atmosphere's composition more than a million years ago are notoriously difficult to obtain. Gases trapped in ancient minerals represent a potential archive of the ancient atmosphere, but their fidelity has not been thoroughly evaluated. Both trapping and preservation artifacts may be relevant. Here, I use a multi-element approach to reanalyze recently collected fluid-inclusion data from halites purportedly containing snapshots of the ancient atmosphere as old as 815 Ma. I argue that those samples were affected by the concomitant trapping of air dissolved in brines and contaminations associated with modern air. These artifacts lead to an apparent excess in O2 and Ar. The samples may also contain signals of mass-dependent fractionation and biogeochemical cycling within the fluid inclusions. After consideration of these artifacts, this new analysis suggests that the Tonian atmosphere was likely low in O2, containing ≤10% present atmospheric levels (PAL), not ∼50% PAL as the data would suggest at face value. Low concentrations of O2 are consistent with other geochemical constraints for this time period and further imply that the majority of Neoproterozoic atmospheric oxygenation occurred after 815 Ma. In addition, the analysis reveals a surprisingly low Tonian Ar inventory-≤60% PAL-which, if accurate, challenges our understanding of the solid Earth's degassing history. When placed in context with other empirical estimates of paleo-atmospheric Ar, the data imply a period of relatively slow atmospheric Ar accumulation in the Paleo- and Meso-Proterozoic, followed by extensive degassing in the late Neoproterozoic or early Cambrian, before returning to a relatively quiescent state by the Devonian. This two-step structure resembles that for the evolution of atmospheric O2, hinting at a common driving force from the deep Earth. Some caution is warranted, however, because still more enigmatic contaminations than the ones presented here may be relevant. Gases trapped in minerals may offer important constraints on the evolution of Earth's surface, climate, and atmosphere, but potential contaminations and other confounding factors need to be considered carefully before these records can be considered quantitative.

Plasma flows and magnetic field interplay during the formation of a pore

NASA Astrophysics Data System (ADS)

Ermolli, I.; Cristaldi, A.; Giorgi, F.; Giannattasio, F.; Stangalini, M.; Romano, P.; Tritschler, A.; Zuccarello, F.

2017-04-01

Aims: Recent simulations of solar magneto-convection have offered new levels of understanding of the interplay between plasma motions and magnetic fields in evolving active regions. We aim at verifying some aspects of the formation of magnetic regions derived from recent numerical studies in observational data. Methods: We studied the formation of a pore in the active region (AR) NOAA 11462. We analysed data obtained with the Interferometric Bidimensional Spectrometer (IBIS) at the Dunn Solar Telescope on April 17, 2012, consisting of full Stokes measurements of the Fe I 617.3 nm lines. Furthermore, we analysed SDO/HMI observations in the continuum and vector magnetograms derived from the Fe I 617.3 nm line data taken from April 15 to 19, 2012. We estimated the magnetic field strength and vector components and the line-of-sight (LOS) and horizontal motions in the photospheric region hosting the pore formation. We discuss our results in light of other observational studies and recent advances of numerical simulations. Results: The pore formation occurs in less than 1 h in the leading region of the AR. We observe that the evolution of the flux patch in the leading part of the AR is faster (<12 h) than the evolution (20-30 h) of the more diffuse and smaller scale flux patches in the trailing region. During the pore formation, the ratio between magnetic and dark area decreases from 5 to 2. We observe strong downflows at the forming pore boundary and diverging proper motions of plasma in the vicinity of the evolving feature that are directed towards the forming pore. The average values and trends of the various quantities estimated in the AR are in agreement with results of former observational studies of steady pores and with their modelled counterparts, as seen in recent numerical simulations of a rising-tube process. The agreement with the outcomes of the numerical studies holds for both the signatures of the flux emergence process (e.g. appearance of small-scale mixed polarity patterns and elongated granules) and the evolution of the region. The processes driving the formation of the pore are identified with the emergence of a magnetic flux concentration and the subsequent reorganization of the emerged flux, by the combined effect of velocity and magnetic field, in and around the evolving structure. Movies associated to Figs. 1 and 4 are available at http://www.aanda.org

Age of the Lava Creek supereruption and magma chamber assembly at Yellowstone based on 40Ar/39Ar and U-Pb dating of sanidine and zircon crystals

USGS Publications Warehouse

Matthews, Naomi E.; Vazquez, Jorge A.; Calvert, Andrew T.

2015-01-01

The last supereruption from the Yellowstone Plateau formed Yellowstone caldera and ejected the >1000 km3 of rhyolite that composes the Lava Creek Tuff. Tephra from the Lava Creek eruption is a key Quaternary chronostratigraphic marker, in particular for dating the deposition of mid Pleistocene glacial and pluvial deposits in western North America. To resolve the timing of eruption and crystallization history for the Lava Creek magma, we performed (1) 40Ar/39Ar dating of single sanidine crystals to delimit eruption age and (2) ion microprobe U-Pb and trace-element analyses of the crystal faces and interiors of single zircons to date the interval of zircon crystallization and characterize magmatic evolution. Sanidines from the two informal members composing Lava Creek Tuff yield a preferred 40Ar/39Ar isochron date of 631.3 ± 4.3 ka. Crystal faces on zircons from both members yield a weighted mean 206Pb/238U date of 626.5 ± 5.8 ka, and have trace element concentrations that vary with the eruptive stratigraphy. Zircon interiors yield a mean 206Pb/238U date of 659.8 ± 5.5 ka, and reveal reverse and/or oscillatory zoning of trace element concentrations, with many crystals containing high U concentration cores that likely grew from highly evolved melt. The occurrence of distal Lava Creek tephra in stratigraphic sequences marking the Marine Isotope Stage 16–15 transition supports the apparent eruption age of ∼631 ka. The combined results reveal that Lava Creek zircons record episodic heating, renewed crystallization, and an overall up-temperature evolution for Yellowstone's subvolcanic reservoir in the 103−104 year interval before eruption.

New therapeutic options for allergic rhinitis: back to the future with intranasal corticosteroid aerosols.

PubMed

Carr, Warner W

2013-01-01

Under current guidelines, intranasal corticosteroids (INSs) are considered the most effective first-line therapy to improve allergic rhinitis (AR) symptoms and burden of disease. In the late 1980s-1990s, chlorofluorocarbon (CFC)-propelled corticosteroid aerosol nasal sprays formed the standard of care for the treatment of AR. Because of environmental concerns, CFC aerosols were gradually phased out, and aqueous INS formulations of nasal sprays became the standard of care. Although many aqueous INS sprays are available, specific product-related factors can reduce patient adherence to an INS and subsequently reduce treatment efficacy. The purpose of this paper was to review the evolution of AR therapeutics and drug devices and how it may have an effect on patient adherence/compliance and patient satisfaction with current available therapies and show the unmet need to improve INS delivery systems. Although aqueous INSs are effective and well tolerated, use in some patients may be compromised because of patient sensory perception and device preference. A historical review of the evolution of intranasal delivery of INSs was undertaken to provide further insight into improving treatment options for patients with AR. Although the various approved INSs appear to be equivalent in terms of reducing AR disease burden, the method in which an INS is delivered to a patient has significant bearing on the overall success of each specific drug product. Hydrofluoroalkane-propelled INS drug products offer a back-to-the-future delivery approach that may be further tailored to the individual patient's needs. Past experiences and the development of new devices are paving the way toward further therapy choices, ultimately affording health care providers access to the most effective treatments for patients with AR.

Physics of the Solar Active Regions from Radio Observations

NASA Astrophysics Data System (ADS)

Gelfreikh, G. B.

1999-12-01

Localized increase of the magnetic field observed by routine methods on the photosphere result in the growth of a number of active processes in the solar atmosphere and the heliosphere. These localized regions of increased magnetic field are called active regions (AR). The main processes of transfer, accumulation and release of energy in an AR is, however, out of scope of photospheric observations being essentially a 3D-process and happening either under photosphere or up in the corona. So, to investigate these plasma structures and processes we are bound to use either extrapolation of optical observational methods or observations in EUV, X-rays and radio. In this review, we stress and illustrate the input to the problem gained from radio astronomical methods and discuss possible future development of their applicatications. Historically speaking each new step in developing radio technique of observations resulted in detecting some new physics of ARs. The most significant progress in the last few years in radio diagnostics of the plasma structures of magnetospheres of the solar ARs is connected with the developing of the 2D full disk analysis on regular basis made at Nobeyama and detailed multichannel spectral-polarization (but one-dimensional and one per day) solar observations at the RATAN-600. In this report the bulk of attention is paid to the new approach to the study of solar activity gained with the Nobeyama radioheliograph and analyzing the ways for future progress. The most important new features of the multicomponent radio sources of the ARs studied using Nobeyama radioheliograph are as follow: 1. The analysis of magnetic field structures in solar corona above sunspot with 2000 G. Their temporal evolution and fluctuations with the periods around 3 and 5 minutes, due to MHD-waves in sunspot magnetic tubes and surrounding plasma. These investigations are certainly based on an analysis of thermal cyclotron emission of lower corona and CCTR above sunspot umbra. 2. Magnetography of the solar active regions presenting the weak magnetic fields (with the sensitivity of several G) reflecting longitude component of the magnetic field in chromosphere and corona and solar faculae structure. The method is based on an analysis of the weak polarization (of the order of 1% or less). 3. An analysis of the structure, temperature, and density of arches seen above neutral magnetic field lines (seen in most ARs with spots and without ones). 4. Study of temporal and spatial behavior of inversion of the sign of the circular polarization with the result of magnetography of the solar corona. 5. An analysis of the solar activity at high heliographic latitudes, observed mostly as polar faculae (increased brightness structures having counterparts in optical white light observations). In modern study of the solar activity analysis of the activity of polar zones are of principal importance. Nobeyama probably presents the most reliable way to study this. The above points present not exactly completed results but rather the directions for future studies. These should use full time coverage of observations at different phases of the solar activity and combination of observations with other radio, optical, EUV and X-ray observations whenever possible.

40Ar/39Ar and unspiked 40K-40Ar dating of upper Pleistocene volcanic activity in the Bas-Vivarais (Ardèche, France)

NASA Astrophysics Data System (ADS)

Sasco, Romain; Guillou, Hervé; Nomade, Sébastien; Scao, Vincent; Maury, René C.; Kissel, Catherine; Wandres, Camille

2017-07-01

Fifteen basanitic and tephritic flows from Bas-Vivarais, the youngest volcanic field in the French Massif Central together with the Chaîne des Puys, were dated by 40Ar/39Ar and 40K-40Ar on separated groundmass, and studied for paleomagnetism. An almost systematic discrepancy between the two types of ages is observed, the 40K-40Ar method providing ages up to 8.5 times the 40Ar/39Ar ones. Microscopic observations and geochemical analyses lead us to conclude that most of the K-Ar ages measured on Bas-Vivarais samples are in error due to extraneous argon originating from contamination by xenocrysts from disintegrated crustal and mantle xenoliths. However, 40Ar/39Ar experiments do not evidence any excess argon, suggesting two possibilities: 1, the extraneous argon contribution was eliminated during the pre-degassing of the samples at 600 °C prior to the step heating experiments, 2 - K-Ar ages may be older because larger quantities of xenocrysts, potential carriers of extraneous argon were involved in the K-Ar experiments than in the 40Ar/39Ar ones. 40Ar/39Ar ages are thus little or not affected by contamination and provide reliable ages for the studied volcanoes. Combined 40Ar/39Ar datings and magnetic directions for each flow point out to three successive stages in the volcanic evolution of Bas-Vivarais. Stage 1, limited to the northern part of the field, has a mean age of 187.3 ± 19.0 ka. In its southern part, Stages 2 and 3 emplaced magmas at 31.1 ± 3.9 ka and 23.9 ± 8.1 ka, respectively. These two last stages are consistent with available 14C dates but not with previous thermoluminescence data.

40Ar/39Ar age of the Manson impact structure, Iowa, and correlative impact ejecta in the Crow Creek member of the Pierre Shale (Upper Cretaceous), South Dakota and Nebraska

USGS Publications Warehouse

Izett, G.A.; Cobban, W.A.; Dalrymple, G.B.; Obradovich, J.D.

1998-01-01

A set of 34 laser total-fusion 40Ar/39Ar analyses of sanidine from a melt layer in crater-fill deposits of the Manson impact structure in Iowa has a weighted-mean age of 74.1 ?? 0.1 Ma. This age is about 9.0 m.y. older than 40Ar/39Ar ages of shocked microcline from the Manson impact structure reported previously by others. The 74.1 Ma age of the sanidine, which is a melt product of Precambrian microcline clasts, indicates that the Manson impact structure played no part in the Cretaceous-Tertiary (K-T) mass extinction at 64.5 Ma. Moreover, incremental-heating 40Ar/39Ar ages of the sanidine show that it is essentially free of excess 40Ar and has not been influenced by postcrystallization heating or alteration. An age spectrum of the matrix of the melt layer shows effects of 39Ar recoil, including older ages in the low-temperature increments and younger ages in the high-temperature increments. At 17 places in eastern South Dakota and Nebraska, shocked quartz and feldspar grains are concentrated in the lower part of the Crow Creek Member of the Pierre Shale (Upper Cretaceous). The grains are largest (3.2 mm) in southeastern South Dakota and decrease in size (0.45 mm) to the northwest, consistent with the idea that the Manson impact structure was their source. The ubiquitous presence of shocked grains concentrated in a thin calcarenite at the base of the Crow Creek Member suggests it is an event bed recording an instant of geologic time. Ammonites below and above the Crow Creek Member limit its age to the zone of Didymoceras nebrascense of earliest late Campanian age. Plagioclase from a bentonite bed in this zone in Colorado has a 40Ar/39Ar age of 74.1 ?? 0.1 Ma commensurate with our sanidine age of 74.1 Ma for the Manson impact structure. 40Ar/39Ar ages of bentonite beds below and above the Crow Creek are consistent with our 74.1 ?? 0.1 Ma age for the Manson impact structure and limit its age to the interval ?? 74.5 0.1 to 73.8 ?? 0.1 Ma. Recently, two origins for the Crow Creek have been proposed - eastward transgression of the Late Cretaceous sea and a Manson impact-triggered tsunami. We conclude that most data are in accord with an impact origin for the Crow Creek Member and are at odds with the marine transgression hypothesis.

Evolution of crystalline target rocks and impactites in the chesapeake bay impact structure, ICDP-USGS eyreville B core

USGS Publications Warehouse

Horton, J. Wright; Kunk, Michael J.; Belkin, Harvey E.; Aleinikoff, John N.; Jackson, John C.; Chou, I.-Ming

2009-01-01

The 1766-m-deep Eyreville B core from the late Eocene Chesapeake Bay impact structure includes, in ascending order, a lower basement-derived section of schist and pegmatitic granite with impact breccia dikes, polymict impact breccias, and cataclas tic gneiss blocks overlain by suevites and clast-rich impact melt rocks, sand with an amphibolite block and lithic boulders, and a 275-m-thick granite slab overlain by crater-fill sediments and postimpact strata. Graphite-rich cataclasite marks a detachment fault atop the lower basement-derived section. Overlying impactites consist mainly of basement-derived clasts and impact melt particles, and coastal-plain sediment clasts are underrepresented. Shocked quartz is common, and coesite and reidite are confirmed by Raman spectra. Silicate glasses have textures indicating immiscible melts at quench, and they are partly altered to smectite. Chrome spinel, baddeleyite, and corundum in silicate glass indicate high-temperature crystallization under silica undersaturation. Clast-rich impact melt rocks contain α-cristobalite and monoclinic tridymite. The impactites record an upward transition from slumped ground surge to melt-rich fallback from the ejecta plume. Basement-derived rocks include amphibolite-facies schists, greenschist(?)-facies quartz-feldspar gneiss blocks and subgreenschist-facies shale and siltstone clasts in polymict impact breccias, the amphibolite block, and the granite slab. The granite slab, underlying sand, and amphibolite block represent rock avalanches from inward collapse of unshocked bedrock around the transient crater rim. Gneissic and massive granites in the slab yield U-Pb sensitive high-resolution ion microprobe (SHRIMP) zircon dates of 615 ± 7 Ma and 254 ± 3 Ma, respectively. Postimpact heating was <~350 °C in the lower basement-derived section based on undisturbed 40Ar/39Ar plateau ages of muscovite and <~150 °C in sand above the suevite based on 40Ar/39Ar age spectra of detrital microcline.

Webizing mobile augmented reality content

NASA Astrophysics Data System (ADS)

Ahn, Sangchul; Ko, Heedong; Yoo, Byounghyun

2014-01-01

This paper presents a content structure for building mobile augmented reality (AR) applications in HTML5 to achieve a clean separation of the mobile AR content and the application logic for scaling as on the Web. We propose that the content structure contains the physical world as well as virtual assets for mobile AR applications as document object model (DOM) elements and that their behaviour and user interactions are controlled through DOM events by representing objects and places with a uniform resource identifier. Our content structure enables mobile AR applications to be seamlessly developed as normal HTML documents under the current Web eco-system.

LEED STUDY OF Ag(111)-(√ 7×√ 7)R19.1^o-4Ar

NASA Astrophysics Data System (ADS)

Caragiu, Mellita; Diehl, Renee D.; Leatherman, Gerry S.

2000-03-01

Recent LEED studies of the adsorption geometries of Xe and Kr on metal surfaces have indicated that, contrary to expectations, the low-coordination adsorption sites are generally preferred, even on relatively corrugated surfaces such as Cu(1\\overline 1 0). This study extends the range of this phenomenon to include Ar. On Ag(111), Ar can form a commensurate structure, Ag(111)-(√ 7×√ 7)R19.1^o-4Ar, if the step sites are first blocked by preadsorbing another species such as CO. A dynamical LEED analysis of this structure at 33K indicates that the structure includes one atom per unit cell on a top site and the remaining three on bridge sites. This structure is clearly preferred over ones in which hollow sites are occupied, providing evidence that the preference of noble gases atoms for low-coordination sites on metals extends to Ar.

Dissociation rate of bromine diatomics in an argon heat bath

NASA Technical Reports Server (NTRS)

Razner, R.; Hopkins, D.

1973-01-01

The evolution of a collection of 300 K bromine diatomics embedded in a heat bath of argon atoms at 1800 K was studied by computer, and a dissociation-rate constant for the reaction Br2 + BR + Ar yields Br + Ar was determined. Previously published probability distributions for energy and angular momentum transfers in classical three-dimensional Br2-Ar collisions were used in conjunction with a newly developed Monte Carlo scheme for this purpose. Results are compared with experimental shock-tube data and the predictions of several other theoretical models. A departure from equilibrium is obtained which is significantly greater than that predicted by any of these other theories.

Arsenic detoxification and evolution of trimethylarsine gas by a microbial arsenite S-adenosylmethionine methyltransferase

PubMed Central

Qin, Jie; Rosen, Barry P.; Zhang, Yang; Wang, Gejiao; Franke, Sylvia; Rensing, Christopher

2006-01-01

In this article, a mechanism of arsenite [As(III)]resistance through methylation and subsequent volatization is described. Heterologous expression of arsM from Rhodopseudomonas palustris was shown to confer As(III) resistance to an arsenic-sensitive strain of Escherichia coli. ArsM catalyzes the formation of a number of methylated intermediates from As(III), with trimethylarsine as the end product. The net result is loss of arsenic, from both the medium and the cells. Because ArsM homologues are widespread in nature, this microbial-mediated transformation is proposed to have an important impact on the global arsenic cycle. PMID:16452170

Study of Three-dimensional Magnetic Structure and the Successive Eruptive Nature of Active Region 12371

NASA Astrophysics Data System (ADS)

Vemareddy, P.; Demóulin, P.

2018-04-01

We study the magnetic structure of a successively erupting sigmoid in active region 12371 by modeling the quasi-static coronal field evolution with nonlinear force-free field (NLFFF) equilibria. Helioseismic and Magnetic Imager/Solar Dynamic Observatory vector magnetograms are used as input to the NLFFF model. In all eruption events, the modeled structure resembles the observed pre-eruptive coronal sigmoid and the NLFFF core field is a combination of double inverse-J-shaped and inverse-S field lines with dips touching the photosphere. Such field lines are formed by the flux cancellation reconnection of opposite-J field lines at bald-patch locations, which in turn implies the formation of a weakly twisted flux-rope (FR) from large-scale sheared arcade field lines. Later on, this FR undergoes coronal tether-cutting reconnection until a coronal mass ejection is triggered. The modeled structure captured these major features of sigmoid-to-arcade-to-sigmoid transformation, which is reoccuring under continuous photospheric flux motions. Calculations of the field line twist reveal a fractional increase followed by a decrease of the number of pixels having a range of twist. This traces the buildup process of a twisted core field by slow photospheric motions and the relaxation after eruption, respectively. Our study infers that the large eruptivity of this AR is due to a steep decrease of the background coronal field meeting the torus instability criteria at a low height (≈40 Mm) in contrast to noneruptive ARs.

Structural Diversity of Ligand-Binding Androgen Receptors Revealed by Microsecond Long Molecular Dynamics Simulations and Enhanced Sampling.

PubMed

Duan, Mojie; Liu, Na; Zhou, Wenfang; Li, Dan; Yang, Minghui; Hou, Tingjun

2016-09-13

Androgen receptor (AR) plays important roles in the development of prostate cancer (PCa). The antagonistic drugs, which suppress the activity of AR, are widely used in the treatment of PCa. However, the molecular mechanism of antagonism about how ligands affect the structures of AR remains elusive. To better understand the conformational variability of ARs bound with agonists or antagonists, we performed long time unbiased molecular dynamics (MD) simulations and enhanced sampling simulations for the ligand binding domain of AR (AR-LBD) in complex with various ligands. Based on the simulation results, we proposed an allosteric pathway linking ligands and helix 12 (H12) of AR-LBD, which involves the interactions among the ligands and the residues W741, H874, and I899. The interaction pathway provides an atomistic explanation of how ligands affect the structure of AR-LBD. A repositioning of H12 was observed, but it is facilitated by the C-terminal of H12, instead of by the loop between helix 11 (H11) and H12. The bias-exchange metadynamics simulations further demonstrated the above observations. More importantly, the free energy profiles constructed by the enhanced sampling simulations revealed the transition process between the antagonistic form and agonistic form of AR-LBD. Our results would be helpful for the design of more efficient antagonists of AR to combat PCa.

40Ar/39Ar mica dating of late Cenozoic sediments in the upper Yangtze: Implications for sediment provenance and drainage evolution

NASA Astrophysics Data System (ADS)

Sun, Xilin; Li, Chang'an; Kuiper, Kuiper; Zhang, Zengjie; Wijbrans, Jan

2017-04-01

The development of the river systems in East Asia is closely linked to the uplift of the Tibetan plateau caused by collision of the India-Eurasia. The Yangtze River is the largest river in Asia and the timing and exact causes of its formation are still a matter of debate. Controversy exists for example on the start of the connection of the eastern Tibetan rivers to the eastward flowing Yangtze instead of the southward flowing Red River. Here we use the 40Ar/39Ar dating of detrital micas (muscovite and biotite) and muscovite geochemistry to constrain the sediment provenance in the eastern Tibetan Plateau. The remarkable spatial and temporal variation in sediment provenance allow us to extract information about the evolution of the upper Yangtze River. The combined data suggest that the upper Jinsha River upstream from Shigu town lost its connection with the southward flowing Red River at least earlier than the Pliocene. To the east of Shigu, the Yalong and Jinsha rivers flowed across the Yuanmou Basin into the Red River before 3.1 Ma, but abandoned this connection and turned east somewhere between 3.1 and 2.1 Ma. Our results rule out the possibility of a west-flowing Jinsha River since 1.58 Ma. The current stream directions between Shigu and Panzhihua go north, south and east and must have been formed at that time. Our data also shed new light on the evolution of the Dadu River. The Dadu River did not flow southward into Yuanmou Basin at least since 4.8 Ma but flowed into the Jinsha River along the Anninghe Fault. These capture events are closely linked to the tectonism of the eastern Tibetan Plateau and intensification of the East Asia monsoon.

The Late-Holocene evolution of the Miseno area (south-western Campi Flegrei) as inferred by stratigraphy, petrochemistry and 40Ar/39Ar geochronology:Chapter 6 in Volcanism in the Campania Plain — Vesuvius, Campi Flegrei and Ignimbrites

USGS Publications Warehouse

Insinga, Donatella; Calvert, Andrew T.; Lanphere, Marvin A.; Morra, Vincenzo; Perrotta, Annamaria; Sacchi, Marco; Scarpati, Claudio; Saburomaru, James; Fedele, Lorenzo

2006-01-01

This study on terrestrial and marine successions increases the understanding of the Late-Holocene volcanological and stratigraphical evolution of the south-western part of Campi Flegrei caldera.Stratigraphic data derived from field studies of two major tuff vents located along the coastal zone, namely Porto Miseno and Capo Miseno, clearly indicate that the Porto Miseno tuff ring slightly predates the Capo Miseno tuff cone. 40Ar/39Ar step-heating experiments, carried out on fresh sanidine separates from pumice samples, yielded a plateau age of 5090±140 yr BP for Capo Miseno and 6490±510 yr BP for Porto Miseno vent, thus confirming field observations.The volcanoclastic input derived from this recent and intense eruptive activity played a major role in the inner-shelf stratigraphic evolution of the Porto Miseno Bay deposits that have been drilled up to 40 m depth off the crater rim. The cored succession is characterised by transgressive marine deposits (mostly volcanic sand) with two intercalated peat layers (t1 and t2), dated at 3560±40 yr BP and 7815±55 yr BP (14C), respectively, interbedded with a 1–5 m thick pumice layer (tephra C). Peat layers have been chronostratigraphically correlated with two widespread paleosols onland while petrochemical analyses allowed us to correlate tephra C with the Capo Miseno tuff cone deposits.The results presented in this study imply a Late-Holocene volcanic activity that is also well preserved in the marine record in this sector of the caldera where a new chronostratigraphic reconstruction of the eruptive events is required in order to better evaluate the hazard assessment of the area.

Nucleosome exclusion from the interspecies-conserved central AT-rich region of the Ars insulator.

PubMed

Takagi, Haruna; Inai, Yuta; Watanabe, Shun-ichiro; Tatemoto, Sayuri; Yajima, Mamiko; Akasaka, Koji; Yamamoto, Takashi; Sakamoto, Naoaki

2012-01-01

The Ars insulator is a boundary element identified in the upstream region of the arylsulfatase (HpArs) gene in the sea urchin, Hemicentrotus pulcherrimus, and possesses the ability to both block enhancer-promoter communications and protect transgenes from silent chromatin. To understand the molecular mechanism of the Ars insulator, we investigated the correlation between chromatin structure, DNA structure and insulator activity. Nuclease digestion of nuclei isolated from sea urchin embryos revealed the presence of a nuclease-hypersensitive site within the Ars insulator. Analysis of micrococcal nuclease-sensitive sites in the Ars insulator, reconstituted with nucleosomes, showed the exclusion of nucleosomes from the central AT-rich region. Furthermore, the central AT-rich region in naked DNA was sensitive to nucleotide base modification by diethylpyrocarbonate (DEPC). These observations suggest that non-B-DNA structures in the central AT-rich region may inhibit nucleosomal formation, which leads to nuclease hypersensitivity. Furthermore, comparison of nucleotide sequences between the HpArs gene and its ortholog in Strongylocentrotus purpuratus revealed that the central AT-rich region of the Ars insulator is conserved, and this conserved region showed significant enhancer blocking activity. These results suggest that the central AT-rich nucleosome-free region plays an important role in the function of the Ars insulator.

Paleomagnetic and geochronologic constraints on the geodynamic evolution of the Central Dinarides

PubMed Central

de Leeuw, Arjan; Mandic, Oleg; Krijgsman, Wout; Kuiper, Klaudia; Hrvatović, Hazim

2012-01-01

The geodynamic evolution of the Dinaride Mountains of southeastern Europe is relatively poorly understood, especially in comparison with the neighboring Alps and Carpathians. Here, we construct a new chronostratigraphy for the post-orogenic intra-montane basins of the Central Dinarides based on paleomagnetic and 40Ar/39Ar age data. A first phase of basin formation occurred in the late Oligocene. A second phase of basin formation took place between 18 and 13 Ma, concurrent with profound extension in the neighboring Pannonian Basin. Our paleomagnetic results further indicate that the Dinarides have not experienced any significant tectonic rotation since the late Oligocene. This implies that the Dinarides were decoupled from the adjacent Adria and the Tisza–Dacia Mega-Units that both underwent major rotation during the Miocene. The Dinaride orogen must consequently have accommodated significant shortening. This is corroborated by our AMS data that indicate post-Middle Miocene shortening in the frontal zone, wrenching in the central part of the orogen, and compression in the hinterland. A review of paleomagnetic data from the Adria plate, which plays a major role in the evolution of the Dinarides as well as the Alps, constrains rotation since the Early Cretaceous to 48 ± 10° counterclockwise and indicates 20° of this rotation took place since the Miocene. It also shows that Adria behaved as an independent plate from the Late Jurassic to the Eocene. From the Eocene onwards, coupling between Adria and Africa was stronger than between Adria and Europe. Adria continued to behave as an independent plate. The amount of rotation within the Adria-Dinarides collision zone increases with age and proximity of the sampled sediments to undeformed Adria. These results significantly improve our insight in the post-orogenic evolution of the Dinarides and resolve an apparent controversy between structural geological and paleomagnetic rotation estimates for the Dinarides as well as Adria. PMID:27065500

Increased androgenic sensitivity in the hind limb muscular system marks the evolution of a derived gestural display.

PubMed

Mangiamele, Lisa A; Fuxjager, Matthew J; Schuppe, Eric R; Taylor, Rebecca S; Hödl, Walter; Preininger, Doris

2016-05-17

Physical gestures are prominent features of many species' multimodal displays, yet how evolution incorporates body and leg movements into animal signaling repertoires is unclear. Androgenic hormones modulate the production of reproductive signals and sexual motor skills in many vertebrates; therefore, one possibility is that selection for physical signals drives the evolution of androgenic sensitivity in select neuromotor pathways. We examined this issue in the Bornean rock frog (Staurois parvus, family: Ranidae). Males court females and compete with rivals by performing both vocalizations and hind limb gestural signals, called "foot flags." Foot flagging is a derived display that emerged in the ranids after vocal signaling. Here, we show that administration of testosterone (T) increases foot flagging behavior under seminatural conditions. Moreover, using quantitative PCR, we also find that adult male S. parvus maintain a unique androgenic phenotype, in which androgen receptor (AR) in the hind limb musculature is expressed at levels ∼10× greater than in two other anuran species, which do not produce foot flags (Rana pipiens and Xenopus laevis). Finally, because males of all three of these species solicit mates with calls, we accordingly detect no differences in AR expression in the vocal apparatus (larynx) among taxa. The results show that foot flagging is an androgen-dependent gestural signal, and its emergence is associated with increased androgenic sensitivity within the hind limb musculature. Selection for this novel gestural signal may therefore drive the evolution of increased AR expression in key muscles that control signal production to support adaptive motor performance.

Increased androgenic sensitivity in the hind limb muscular system marks the evolution of a derived gestural display

PubMed Central

Mangiamele, Lisa A.; Fuxjager, Matthew J.; Schuppe, Eric R.; Taylor, Rebecca S.; Hödl, Walter; Preininger, Doris

2016-01-01

Physical gestures are prominent features of many species’ multimodal displays, yet how evolution incorporates body and leg movements into animal signaling repertoires is unclear. Androgenic hormones modulate the production of reproductive signals and sexual motor skills in many vertebrates; therefore, one possibility is that selection for physical signals drives the evolution of androgenic sensitivity in select neuromotor pathways. We examined this issue in the Bornean rock frog (Staurois parvus, family: Ranidae). Males court females and compete with rivals by performing both vocalizations and hind limb gestural signals, called “foot flags.” Foot flagging is a derived display that emerged in the ranids after vocal signaling. Here, we show that administration of testosterone (T) increases foot flagging behavior under seminatural conditions. Moreover, using quantitative PCR, we also find that adult male S. parvus maintain a unique androgenic phenotype, in which androgen receptor (AR) in the hind limb musculature is expressed at levels ∼10× greater than in two other anuran species, which do not produce foot flags (Rana pipiens and Xenopus laevis). Finally, because males of all three of these species solicit mates with calls, we accordingly detect no differences in AR expression in the vocal apparatus (larynx) among taxa. The results show that foot flagging is an androgen-dependent gestural signal, and its emergence is associated with increased androgenic sensitivity within the hind limb musculature. Selection for this novel gestural signal may therefore drive the evolution of increased AR expression in key muscles that control signal production to support adaptive motor performance. PMID:27143723

Implications for Lunar Crustal Evolution from Y-86032 and Dho 908

NASA Technical Reports Server (NTRS)

Nyquist, L. E.; Shih, C. -Y.; Reese, Y. D.; Park, J.; Bogard, D. D.; Garrison, D. H.; Yamaguchi, A.; Joy, K. H.

2010-01-01

We have studied anorthositic clasts in the Y-86032 and Dhofar 908 meteorites by the Rb-Sr, Sm-Nd, and Ar-39-Ar-40 techniques combining isotopic studies with mineralogical/petrological studies of the same clasts. As a result of these studies, we conclude that the lunar crust is composed of a variety of anorthosites, at least some of which must have formed as plutons in the earliest formed ferroan anorthosite crust.

Geology, age, and tectonic setting of the Cretaceous Sliderock Mountain Volcano, Montana

USGS Publications Warehouse

Du Bray, E.A.; Harlan, Stephen S.

1998-01-01

The Sliderock Mountain stratovolcano, part of the Upper Cretaceous continental magmatic arc in southwestern Montana, consists of volcaniclastic strata and basaltic andesite lava flows. An intrusive complex represents the volcano's solidified magma chamber. Compositional diversity within components of the volcano appears to reflect evolution via about 50 percent fractional crystallization involving clinopyroxene and plagioclase. 40Ar/39Ar indicate that the volcano was active about 78?1 Ma.

Large Magellanic Cloud Planetary Nebula Morphology: Probing Stellar Populations and Evolution.

PubMed

Stanghellini; Shaw; Balick; Blades

2000-05-10

Planetary nebulae (PNe) in the Large Magellanic Cloud (LMC) offer the unique opportunity to study both the population and evolution of low- and intermediate-mass stars, by means of the morphological type of the nebula. Using observations from our LMC PN morphological survey, and including images available in the Hubble Space Telescope Data Archive and published chemical abundances, we find that asymmetry in PNe is strongly correlated with a younger stellar population, as indicated by the abundance of elements that are unaltered by stellar evolution (Ne, Ar, and S). While similar results have been obtained for Galactic PNe, this is the first demonstration of the relationship for extragalactic PNe. We also examine the relation between morphology and abundance of the products of stellar evolution. We found that asymmetric PNe have higher nitrogen and lower carbon abundances than symmetric PNe. Our two main results are broadly consistent with the predictions of stellar evolution if the progenitors of asymmetric PNe have on average larger masses than the progenitors of symmetric PNe. The results bear on the question of formation mechanisms for asymmetric PNe-specifically, that the genesis of PNe structure should relate strongly to the population type, and by inference the mass, of the progenitor star and less strongly on whether the central star is a member of a close binary system.

Androgen receptor: structure, role in prostate cancer and drug discovery

PubMed Central

Tan, MH Eileen; Li, Jun; Xu, H Eric; Melcher, Karsten; Yong, Eu-leong

2015-01-01

Androgens and androgen receptors (AR) play a pivotal role in expression of the male phenotype. Several diseases, such as androgen insensitivity syndrome (AIS) and prostate cancer, are associated with alterations in AR functions. Indeed, androgen blockade by drugs that prevent the production of androgens and/or block the action of the AR inhibits prostate cancer growth. However, resistance to these drugs often occurs after 2–3 years as the patients develop castration-resistant prostate cancer (CRPC). In CRPC, a functional AR remains a key regulator. Early studies focused on the functional domains of the AR and its crucial role in the pathology. The elucidation of the structures of the AR DNA binding domain (DBD) and ligand binding domain (LBD) provides a new framework for understanding the functions of this receptor and leads to the development of rational drug design for the treatment of prostate cancer. An overview of androgen receptor structure and activity, its actions in prostate cancer, and how structural information and high-throughput screening have been or can be used for drug discovery are provided herein. PMID:24909511

The role of the memory inherited by the system from the Cretaceous-Tertiary evolution of convergent margins into the build-up of the Source area (Apuseni Mountains, Romania).

NASA Astrophysics Data System (ADS)

Reiser, Martin; Fügenschuh, Bernhard; Schuster, Ralf

2010-05-01

The Apuseni mountains in Romania take a central position in the Alpine Carpathian Dinaride system and separate the Pannonian basin in the west from the Transsylvanian basin in the east. The Cretaceous age nappe stack involves from bottom to top Tisza- (Bihor and Codru) and Dacia-derived units (Biharia, according to Schmid et al., 2008) overlain by the South Apuseni and Transylvanian ophiolite belt. This study tries to provide new and additional information on the structural and metamorphic evolution of these units from the Jurassic obduction to neotectonic activity. This also comprises information on their interaction with the neighbouring basins. The objective is to show the impact of large scale (plate) tectonics (f.i. in terms of its thermal configuration and strengths profile) and the impact of early-formed tectonic features for the further evolution, specifically the formation of the surrounding basins together with its feedback with topography. This approach includes investigation of kinematics along first order contacts during distinct events together with the thermotectonic characterization of the involved units. While the early "high-grade" evolution will be geochronologically addressed by Sm/Nd, Rb/Sr and Ar/Ar dating, fission track analysis on zircon and apatite will be used to constrain the low-temperature part of the story. Already available data by Sanders (1998), Schuller (2004), Merten (in preparation) and Kounov (in preparation) together with new own data will be used to provide a 4D model for the late-stage thermal evolution of the Apuseni mountains. Thermal modelling will be compared and integrated with numerical modelling of the landscape evolution. The hereby generated data and information on erosion and exhumation will be further used in associated partner projects of the Source to Sink research network which addresses the evolution of the Danube system from the hinterland to the Black Sea. References: Sanders, C. A. E. (1998), Tectonics and erosion - Competitive forces in a compressive orogen: A fission track study of the Romanian Carpathians, PhD-thesis, Vrije Universiteit, Amsterdam, pp. 204. Schuller, V. (2004), Evolution and geodynamic significance of the Upper Cretaceous Gosau basin in the Apuseni Mountains (Romania), PhD Thesis, Tubinger Geowiss. Arb. Reihe A70, 112 pp. Schmid, S. M., D. Bernoulli, B. Fügenschuh, L. Matenco, S. Schaefer, R. Schuster, M. Tischler and K. Ustaszewski (2008), The Alps-Carpathians-Dinaridic orogenic system: correlation and evolution of tectonic units, Swiss Journal of Geosciences, 2008.

Tectono-metamorphic evolution of the Kibuye-Gitarama-Gatumba area (Rwanda): using petrochronology to unravel the geodynamic framework of the Karagwe-Ankole Belt

NASA Astrophysics Data System (ADS)

Van Daele, Johanna; Jacques, Dominique; Hulsbosch, Niels; Dewaele, Stijn; Muchez, Philippe

2017-04-01

The Mesoproterozoic Karagwe-Ankole Belt (KAB) extends from Burundi over Rwanda and NW-Tanzania to S-Uganda (Central Africa). The integration of the metamorphic and magmatic evolution of this orogenic belt in a consistent geodynamic framework is still controversial. Additionally, geochronological information on the deformation phases is limited. This tectono-metamorphic model is, however, a crucial component in the understanding of the Meso- to Early Neoproterozoic mineralization processes. A detailed structural mapping of road and river transects was performed in the Kibuye-Gitarama-Gatumba area (West Rwanda) to determine the deformation history of the KAB. Structural analyses and petrographic studies identified two main compressive deformation phases. A locally observed foliation with a N45W-N50W orientation is interpreted as the consequence of a first compressional phase (D1, shortening direction N40E-N45E). Additionally, a well-developed crenulation cleavage and a regionally pervasive foliation were found. The cleavage and foliation have an orientation of N20W-N30W (exceptionally N20E) and are indicative of a second compressional phase (D2) with an EW shortening direction. Final extension (D3) along a N30W-N10E direction resulted in boudinage and joint development. Fieldwork observations combined with known ages of the granites in the KAB indicate that D1 and D2 took place prior to 986 Ma while D3 is younger than 986 Ma. Based on thin section petrography, a petrochronological strategy was outlined to fill in the gaps of the currently broadly defined timeframe. The regional metamorphic grade of the study area is upper greenschist, with the formation of muscovite, biotite, chlorite, garnet, staurolite and cordierite. The main penetrative tectonic foliations (D1 and D2) are expressed by the preferential orientation of muscovite or biotite. In some cases, muscovite growing along the crenulation cleavage (syn-D2) was observed. Furthermore, pre- and syn-D2 garnets were identified. Different generations of quartz veins (post-dating D3) contain muscovite, garnet and/or biotite. These minerals provide excellent dating possibilities (Ar-Ar, in-situ Rb-Sr and Sm-Nd). The obtained results will be used to refine the chronological aspects of the deformation history of the KAB. Furthermore, these data will be combined with regional structural data, petrographic and geothermobarometric analyses to reconstruct the tectono-metamorphic evolution of the Karagwe-Ankole Belt, which will allow to obtain a better insight in the geodynamic evolution and the ore-forming processes.

Multistage extensional evolution of the central East Greenland Caledonides

NASA Astrophysics Data System (ADS)

White, Arthur P.; Hodges, Kip V.

2002-10-01

Recent field investigations in the central East Greenland Caledonides (72°-74°N) resulted in the identification of an orogen-scale extensional fault system called the Fjord Region Detachment (FRD). Previous geochronologic constraints on this deformation indicated that the FRD was active circa 430-425 Ma, a time when the Baltica-Laurentia collision was thought to be occurring, and continued to be active for up to 80 million years. We present new 40Ar/39Ar thermochronologic data from an E-W transect that cuts across two splays of the FRD. Our data demonstrate that at least two distinct episodes of faulting were responsible for extension in the East Greenland Caledonides: an earlier phase (circa 425-423 Ma) that was synorogenic and penetrated to middle-crustal levels, followed by a post-Caledonian phase of reactivation (˜414 to 380 Ma) that affected even deeper structural levels. Furthermore, we present in situ UV laser 40Ar/39Ar data for pseudotachylite collected along the deepest splay of the FRD that indicate this fault was active again as recently as ˜357 Ma (coeval with Devonian basin formation). Altogether, our data suggest that rather than being active continuously for 80 million years, the FRD consisted of multiple splays that were active for shorter intervals over discrete time periods separated by as much as 60 million years. Finally, our data provide evidence that young extensional deformation associated with postorogenic collapse in East Greenland was not restricted to the formation of sedimentary basins in the far eastern part of the orogen, but also resulted in deformation of the Archean-Paleozoic crystalline basement.

Structures, bonding, and reaction chemistry of the neutral organogallium(I) compounds (GaAr)n(n = 1 or 2) (Ar = terphenyl or related ligand): an experimental investigation of Ga-Ga multiple bonding.

PubMed

Hardman, Ned J; Wright, Robert J; Phillips, Andrew D; Power, Philip P

2003-03-05

The synthesis, structure, and properties of several new organogallium(I) compounds are reported. The monovalent compounds GaAr* (Ar* = C(6)H(3)-2,6-Trip(2), Trip = C(6)H(2)-2,4,6-Pr(i)()(3), 1), GaAr# (Ar# = C(6)H(3)-2,6(Bu(t)Dipp)(2), Bu(t)Dipp = C(6)H(2)-2,6-Pr(i)(2)-4-Bu(t)(), 4), and the dimeric (GaAr')(2) (Ar' = C(6)H(3)-2,6-Dipp(2), Dipp = C(6)H(3)-2,6-Pr(i)(2), 6) were synthesized by the reaction of "GaI" with (Et(2)O)LiAr*, (Et(2)O)LiAr# (3), or (LiAr')(2). Compounds 1 and 4 were isolated as green crystals, whereas 6 was obtained as a brown-red crystalline solid. All three compounds dissolved in hydrocarbon solvents to give green solutions and almost identical UV/visible spectra. Cryoscopy of 1 and 6 showed that they were monomeric in cyclohexane. Crystals of 1 and 4 were unsuitable for X-ray crystal structure determinations, but an X-ray data set for 6 showed that it was weakly dimerized in the solid with a long Ga-Ga bond of 2.6268(7) A and a trans-bent CGaGaC core array. The 1,2-diiodo-1,2-diaryldigallane compounds [Ga(Ar*)I](2) (2), [Ga(Ar#)I](2) (5), and [Ga(Ar')I](2) (7) were isolated as byproducts of the synthesis of 1, 4, and 6. The crystal structures of 2 and 7 showed that they had planar ICGaGaCI core arrays with Ga-Ga distances near 2.49 A, consistent with Ga-Ga single bonding. Treatment of 1, 4, and 6 with B(C(6)F(5))(3) immediately afforded the 1:1 donor-acceptor complexes ArGa[B(C(6)F(5))(3)] (Ar = Ar*, 8; Ar#, 9; Ar', 10) that featured almost linear gallium coordination, Ga-B distances near the sum of the covalent radii of gallium and boron, as well as some close Ga...F contacts. Compound 1 also reacted with Fe(CO)(5) under ambient conditions to give Ar*GaFe(CO)(4) (11), which had been previously synthesized by the reaction of GaAr*Cl(2) with Na(2)Fe(CO)(4). Reaction of 1 with 2,3-dimethyl-1,3-butadiene afforded the compound [Ar*GaCH(2)C(Me)C(Me)CH(2)]2 (12) that had a 10-membered 1,5-Ga(2)C(8) ring with no Ga-Ga interaction. Stirring 1 or 6 with sodium readily gave Na(2)[Ar*GaGaAr*] (13) and Na(2)(Ar'GaGaAr') (14). The former species 13 had been synthesized previously by reduction of GaAr*Cl(2) with sodium and was described as having a Ga-Ga triple bond because of the short Ga-Ga distance and the electronic relationship between [Ar*GaGaAr*](2-) and the corresponding neutral group 14 alkyne analogues. Compound 14 has a similar structure featuring a trans-bent CGaGaC core, bridged by sodiums which were also coordinated to the flanking aryl rings of the Ar' ligands. The Ga-Ga bond length was found to be 2.347(1) A, which is slightly (ca. 0.02 A) longer than that reported for 13. Reaction of Ga[N(Dipp)C(Me)](2)CH, 15 (i.e., GaN(wedge)NDipp(2)), which is sterically related to 1, 4, and 6, with Fe(CO)(5) yielded Dipp(2)N(wedge)NGaFe(CO)(4) (16), whose Ga-Fe bond is slightly longer than that observed in 11. Reaction of the less bulky LiAr"(Ar"= C(6)H(3)-2,6-Mes(2)) with "GaI" afforded the new paramagnetic cluster Ga(11)Ar(4)" (17). The ready dissociation of 1, 4, and 6 in solution, the long Ga-Ga distance in 6, and the chemistry of these compounds showed that the Ga-Ga bonds are significantly weaker than single bonds. The reduction of 1 and 6 with sodium to give 13 and 14 supplies two electrons to the di-gallium unit to generate a single bond (in addition to the weak interaction in the neutral precursor) with retention of the trans-bent geometry. It was concluded that the stability of 13 and 14 depends on the matching size of the sodium ion, and the presence of Na-Ga and Na-Ar interactions that stabilize their Na(2)Ga(2) core structures.

Titanium embedded cage structure formation in Al{sub n}Ti{sup +} clusters and their interaction with Ar

DOE Office of Scientific and Technical Information (OSTI.GOV)

Torres, M. B., E-mail: begonia@ubu.es; Vega, A.; Balbás, L. C.

2014-05-07

Recently, Ar physisorption was used as a structural probe for the location of the Ti dopant atom in aluminium cluster cations, Al{sub n}Ti{sup +} [Lang et al., J. Am. Soc. Mass Spectrom. 22, 1508 (2011)]. As an experiment result, the lack of Ar complexes for n > n{sub c} determines the cluster size for which the Ti atom is located inside of an Al cage. To elucidate the decisive factors for the formation of endohedrally Al{sub n}Ti{sup +}, experimentalists proposed detailed computational studies as indispensable. In this work, we investigated, using the density functional theory, the structural and electronic propertiesmore » of singly titanium doped cationic clusters, Al{sub n}Ti{sup +} (n = 16–21) as well as the adsorption of an Ar atom on them. The first endohedral doped cluster, with Ti encapsulated in a fcc-like cage skeleton, appears at n{sub c} = 21, which is the critical number consistent with the exohedral-endohedral transition experimentally observed. At this critical size the non-crystalline icosahedral growth pattern, related to the pure aluminium clusters, with the Ti atom in the surface, changes into a endohedral fcc-like pattern. The map of structural isomers, relative energy differences, second energy differences, and structural parameters were determined and analyzed. Moreover, we show the critical size depends on the net charge of the cluster, being different for the cationic clusters (n{sub c} = 21) and their neutral counterparts (n{sub c} = 20). For the Al {sub n} Ti {sup +} · Ar complexes, and for n < 21, the preferred Ar adsorption site is on top of the exohedral Ti atom, with adsorption energy in very good agreement with the experimental value. Instead, for n = 21, the Ar adsorption occurs on the top an Al atom with very low absorption energy. For all sizes the geometry of the Al{sub n}Ti{sup +} clusters keeps unaltered in the Ar-cluster complexes. This fact indicates that Ar adsorption does not influence the cluster structure, providing support to the experimental technique used. For n{sub c} = 21, the smallest size of endohedral Ti doped cationic clusters, the Ar binding energy decreases drastically, whereas the Ar-cluster distance increases substantially, point to Ar physisorption, as assumed by the experimentalists. Calculated Ar adsorption energies agree well with available experimental binding energies.« less

K-Ar age constrains on chemically weathered granitic basement rocks (saprolites) in Scandinavia

NASA Astrophysics Data System (ADS)

Margreth, Annina; Fredin, Ola; Viola, Giulio; Knies, Jochen; Sørlie, Ronald; Lie, Jan-Erik; Margrethe Grandal, Else; Zwingmann, Horst; Vogt, Christoph

2017-04-01

Remnants of in-situ weathered bedrock, saprolite, are found in several locations in Scandinavia. Saprolites contain important information about past climate conditions and landscape evolution, although their age and genesis are commonly difficult to constrain. It is generally thought that clay-poor, coarse-grained (arêne) saprolites, mostly occurring as thin regolith blankets or in larger outcrops, formed in temperate climate during the Cenozoic, whereas clay-rich (argillic) saprolites, commonly restricted to small, fracture-bounded outcrops, formed in (sub-)tropical climate during the Mesozoic. Recent methodological and conceptual advances in K-Ar dating of illite-bearing fault rocks have been applied to date clay-rich saprolites. To test the K-Ar dating technique for saprolites, we first selected an offshore site in the Viking Graben of the North Sea, where weathered and fractured granitic basement highs have been drilled during petroleum exploration, and an abandoned kaolin mine in Southern Sweden. Both targets provide independent age control through the presence of overlying Mesozoic sedimentary rocks. Clay-rich saprolites occurring in fractured basement rocks were additionally sampled in a joint valley landscape on the southwestern coast of Norway, which can be regarded as the possible onland correlative to the offshore basement high. In order to offer a sound interpretation of the obtained K-Ar ages, the mineralogical and chemical composition of the saprolites requires a thorough characterization. Scanning electron microscopy of thin sections, integrated by XRD and XRF analysis, reveals the progressive transformation of primary granitic rock minerals into secondary clay minerals. The authigenesis of illite is particularly important to understand, since it is the only K-bearing clay mineral that can be dated by the K-Ar method. K-feldspars and mica are the common primary K-bearing minerals, from which illite can be formed. While progressive leaching of interlayer potassium is observed in micas without significant modification of the mineral structure, K-feldspars are gradually dissolved with concomitant precipitation of illite, smectite and kaolinite. Individual illite minerals are difficult to identify, but low-K contents in smectite point to small amounts of illite-interlayers. This finding is supported by XRD patterns (powder analyses on clay size fractions) that lack a clear 10 Å peak indicating the presence of illite/mica, but show a prominent and slight asymmetric 14 Å peak representing smectite with potential low (<10 %) illite-interlayer content. In agreement with previous models of diminishing contamination of protolithic K-bearing phases in the finest grain size fractions, K-Ar ages invariably decrease with grain size suggesting that the finest grain-size is predominantly composed of authigenic, syn-weathering illite, whose age can thus be used to constrain the timing of saprolitization. The obtained Late Permian to Late Triassic ages i) are in accordance with independent age constraints supporting previous hypotheses of intense chemical weathering during the Mesozoic and ii) correlate with similar K-Ar ages obtained from nearby brittle faults suggesting a genetic relationship between weathering and brittle deformation. The combined investigation and K-Ar dating of illite-bearing fractured and weathered bedrock provides new insights into the tectonic and climatic evolution of the Scandinavian landscape prior to the major, and often obliterating, Quaternary glaciations.

Food commensal microbes as a potentially important avenue in transmitting antibiotic resistance genes.

PubMed

Wang, Hua H; Manuzon, Michele; Lehman, Mark; Wan, Kai; Luo, Hongliang; Wittum, Thomas E; Yousef, Ahmed; Bakaletz, Lauren O

2006-01-01

The rapid emergence of antibiotic-resistant (ART) pathogens is a major threat to public health. While the surfacing of ART food-borne pathogens is alarming, the magnitude of the antibiotic resistance (AR) gene pool in food-borne commensal microbes is yet to be revealed. Incidence of ART commensals in selected retail food products was examined in this study. The presence of 10(2)-10(7) CFU of ART bacteria per gram of foods in many samples, particularly in ready-to-eat, 'healthy' food items, indicates that the ART bacteria are abundant in the food chain. AR-encoding genes were detected in ART isolates, and Streptococcus thermophilus was found to be a major host for AR genes in cheese microbiota. Lactococcus lactis and Leuconostoc sp. isolates were also found carrying AR genes. The data indicate that food could be an important avenue for ART bacterial evolution and dissemination. AR-encoding plasmids from several food-borne commensals were transmitted to Streptococcus mutans via natural gene transformation under laboratory conditions, suggesting the possible transfer of AR genes from food commensals to human residential bacteria via horizontal gene transfer.

Structure in Radiative Shocks

NASA Astrophysics Data System (ADS)

Drake, R. Paul; Visco, A.; Doss, F.; Reighard, A.; Froula, D.; Glenzer, S.; Knauer, J.

2008-05-01

Radiative shocks are shock waves fast enough that radiation from the shock-heated matter alters the structure of the shock. They are of fundamental interest to high-energy-density physics and also have applications throughout astrophysics. This poster will review the dimensionless parameters that determine structure in these shocks and will discuss recent experiments to measure such structure for strongly radiative shocks that are optically thin upstream and optically thick downstream. The shock transition itself heats mainly the ions. Immediately downstream of the shock, the ions heat the electrons and the electrons radiate, producing an optically thin cooling layer, followed by the downstream layer of warm, shocked material. The axial structure of these systems is of interest, because the transition from precursor through the cooling layer to the final state is complex and difficult to calculate. Their lateral structure is also of interest, as they seem likely to be subject to some variation on the Vishniac instability of thin layers. In our experiments to produce such shocks, laser ablation launches a Be plasma into a tube of Xe or Ar gas, at a velocity above 100 km/s. This drives a shock down the tube. Radiography provides fundamental information about the structure and evolution of the shocked material in Xe. Thomson scattering and pyrometry have provided data in Ar. We will summarize the available evidence regarding the properties of these shocks, and will discuss their connections to astrophysical cases. This research was sponsored by the National Nuclear Security Administration under the Stewardship Science Academic Alliances program through DOE Research Grants DE-FG52-07NA28058, DE-FG52-04NA00064, and other grants and contracts.

How is the fitness landscaped upon which life evolves selected?

NASA Astrophysics Data System (ADS)

Deem, Michael

2008-03-01

We investigate the selective forces that promote the emergence of modularity in nature. We demonstrate the spontaneous emergence of modularity in a population of individuals that evolve in a changing environment. We show that the level of modularity correlates with the rapidity and severity of environmental change. The modularity arises as a synergistic response to the noise in the environment in the presence of horizontal gene transfer. We suggest that the hierarchical structure observed in the natural world may be a broken symmetry state, which generically results from evolution in a changing environment. The existence of such structure, therefore, need not necessarily rest on intelligent design or the anthropic principle. 1) J. Sun and M. W. Deem, Phys. Rev. Lett., to appear., arXiv:0710.3436

Paleo- and Neoproterozoic magmatic and tectonometamorphic evolution of the Isla Cristalina de Rivera (Nico Pérez Terrane, Uruguay)

NASA Astrophysics Data System (ADS)

Oyhantçabal, Pedro; Wagner-Eimer, Martin; Wemmer, Klaus; Schulz, Bernhard; Frei, Robert; Siegesmund, Siegfried

2012-10-01

The Isla Cristalina de Rivera crystalline complex in northeastern Uruguay underwent a multistage magmatic and metamorphic evolution. Based on SHRIMP U-Pb zircon, Th-U-Pb monazite (CHIME-EPMA method) and K-Ar age data from key units several events can be recognized: (1) multistage magmatism at 2,171-2,114 Ma, recorded on zircon of the granulitic orthogneisses and their 2,093-2,077 Ma overgrowths; (2) a distinct amphibolite facies metamorphism at ~1,980 Ma, recorded by monazite; (3) greenschist facies reworking and shearing at ca. 606 Ma (monazite and K-Ar on muscovite) along the Rivera Shear Zone, and finally (4) intrusion of the post-tectonic Sobresaliente and Las Flores granites at around 585 Ma. Lithological similarities, geographic proximity and coeval magmatic and metamorphic events indicate a similar tectonometamorphic evolution for the Isla Cristalina de Rivera, the Valentines Block in Uruguay and the Santa María Chico Granulitic Complex in southern Brazil, since at least 2.1 Ga.

A NEW METHOD TO QUANTIFY AND REDUCE THE NET PROJECTION ERROR IN WHOLE-SOLAR-ACTIVE-REGION PARAMETERS MEASURED FROM VECTOR MAGNETOGRAMS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Falconer, David A.; Tiwari, Sanjiv K.; Moore, Ronald L.

Projection errors limit the use of vector magnetograms of active regions (ARs) far from the disk center. In this Letter, for ARs observed up to 60° from the disk center, we demonstrate a method for measuring and reducing the projection error in the magnitude of any whole-AR parameter that is derived from a vector magnetogram that has been deprojected to the disk center. The method assumes that the center-to-limb curve of the average of the parameter’s absolute values, measured from the disk passage of a large number of ARs and normalized to each AR’s absolute value of the parameter atmore » central meridian, gives the average fractional projection error at each radial distance from the disk center. To demonstrate the method, we use a large set of large-flux ARs and apply the method to a whole-AR parameter that is among the simplest to measure: whole-AR magnetic flux. We measure 30,845 SDO /Helioseismic and Magnetic Imager vector magnetograms covering the disk passage of 272 large-flux ARs, each having whole-AR flux >10{sup 22} Mx. We obtain the center-to-limb radial-distance run of the average projection error in measured whole-AR flux from a Chebyshev fit to the radial-distance plot of the 30,845 normalized measured values. The average projection error in the measured whole-AR flux of an AR at a given radial distance is removed by multiplying the measured flux by the correction factor given by the fit. The correction is important for both the study of the evolution of ARs and for improving the accuracy of forecasts of an AR’s major flare/coronal mass ejection productivity.« less

Breakout Reconnection Observed by the TESIS EUV Telescope

NASA Astrophysics Data System (ADS)

Reva, A. A.; Ulyanov, A. S.; Shestov, S. V.; Kuzin, S. V.

2016-01-01

We present experimental evidence of the coronal mass ejection (CME) breakout reconnection, observed by the TESIS EUV telescope. The telescope could observe solar corona up to 2 R⊙ from the Sun center in the Fe 171 Å line. Starting from 2009 April 8, TESIS observed an active region (AR) that had a quadrupolar structure with an X-point 0.5 R⊙ above photosphere. A magnetic field reconstructed from the Michelson Doppler Imager data also has a multipolar structure with an X-point above the AR. At 21:45 UT on April 9, the loops near the X-point started to move away from each other with a velocity of ≈7 km s-1. At 01:15 UT on April 10, a bright stripe appeared between the loops, and the flux in the GOES 0.5-4 Å channel increased. We interpret the loops’ sideways motion and the bright stripe as evidence of the breakout reconnection. At 01:45 UT, the loops below the X-point started to slowly move up. At 15:10 UT, the CME started to accelerate impulsively, while at the same time a flare arcade formed below the CME. After 15:50 UT, the CME moved with constant velocity. The CME evolution precisely followed the breakout model scenario.

Oldest human footprints dated by Ar/Ar

NASA Astrophysics Data System (ADS)

Scaillet, Stéphane; Vita-Scaillet, Grazia; Guillou, Hervé

2008-11-01

Fossilized human trackways are extremely rare in the geologic record. These bear indirect but invaluable testimony of human/hominid locomotion in open air settings and can provide critical information on biomechanical changes relating to bipedalism evolution throughout the primitive human lineage. Among these, the "Devil's footsteps" represent one of the best preserved human footprints suite recovered so far in a Pleistocene volcanic ash of the Roccamonfina volcano (southern Italy). Until recently, the age of these footprints remained speculative and indirectly correlated with a loosely dated caldera-forming eruption that produced the Brown Leucitic Tuff. Despite extensive hydrothermal alteration of the pyroclastic deposit and variable contamination with excess 40Ar, detailed and selective 40Ar/ 39Ar laser probe analysis of single leucite crystals recovered from the ash deposit shows that the pyroclastic layer and the footprints are 345 ± 6 kyr old (1 σ), confirming for the first time that these are the oldest human trackways ever dated, and that they were presumably left by the modern human predecessor, Homo heidelbergensis, close to Climatic Termination IV.

Constraints on formation and evolution of the lunar crust from feldspathic granulitic breccias NWA 3163 and 4881

NASA Astrophysics Data System (ADS)

McLeod, Claire L.; Brandon, Alan D.; Fernandes, Vera A.; Peslier, Anne H.; Fritz, Jörg; Lapen, Thomas; Shafer, John T.; Butcher, Alan R.; Irving, Anthony J.

2016-08-01

Lunar granulitic meteorites provide new constraints on the composition and evolution of the lunar crust as they are potentially derived from outside the Apollo and Luna landing sites. Northwest Africa (NWA) 3163, the focus of this study, and its paired stones NWA 4881 and NWA 4483, are shocked granulitic noritic anorthosites. They are petrographically and compositionally distinct from the Apollo granulites and noritic anorthosites. Northwest Africa 3163 is REE-depleted by an order of magnitude compared to Apollo granulites and is one of the most trace element depleted lunar samples studied to date. New in-situ mineral compositional data and Rb-Sr, Ar-Ar isotopic systematics are used to evaluate the petrogenetic history of NWA 3163 (and its paired stones) within the context of early lunar evolution and the bulk composition of the lunar highlands crust. The NWA 3163 protolith was the likely product of reworked lunar crust with a previous history of heavy REE depletion. The bulk feldspathic and pyroxene-rich fragments have 87Sr/86Sr that are indistinguishable and average 0.699282 ± 0.000007 (2σ). A calculated source model Sr TRD age of 4.340 ± 0.057 Ga is consistent with (1) the recently determined young FAS (Ferroan Anorthosite) age of 4.360 ± 0.003 Ga for FAS 60025, (2) 142Nd model ages for the closure of the Sm-Nd system for the mantle source reservoirs of the Apollo mare basalts (4.355-4.314 Ga) and (3) a prominent age peak in the Apollo lunar zircon record (c. 4.345 Ga). These ages are ∼100 Myr younger than predicted timescales for complete LMO crystallization (∼10 Myrs after Moon formation, Elkins-Tanton et al., 2011). This supports a later, major event during lunar evolution associated with crustal reworking due to magma ocean cumulate overturn, serial magmatism, or a large impact event leading to localized or global crustal melting and/or exhumation. The Ar-Ar isotopic systematics on aliquots of paired stone NWA 4881 are consistent with an impact event at ⩾ 3.5 Ga. This is inferred to record the event that induced granularization of NWA 3163 (and paired rocks). A later event is also recorded at ∼2 Ga by Ar-Ar isotopes is consistent with an increase in the number of impacts on the lunar surface at this time (Fernandes et al., 2013). Northwest Africa 3163 and its paired stones therefore record a c. 2.4 Gyr record of lunar crustal production, metamorphism, brecciation, impacts and eventual ejection from the lunar surface.

Neuropeptide diversity and the regulation of social behavior in New World primates

PubMed Central

French, Jeffrey A.; Taylor, Jack H.; Mustoe, Aaryn C.; Cavanaugh, Jon

2016-01-01

Oxytocin (OT) and vasopressin (AVP) are important hypothalamic neuropeptides that regulate peripheral physiology, and have emerged as important modulators of brain function, particularly in the social realm. OT structure and the genes that ultimately determine structure are highly conserved among diverse eutherian mammals, but recent discoveries have identified surprising variability in OT and peptide structure in New World monkeys (NWM), with five new OT variants identified to date. This review explores these new findings in light of comparative OT/AVP ligand evolution, documents coevolutionary changes in the oxytocin and vasopressin receptors (OTR and V1aR), and highlights the distribution of neuropeptidergic neurons and receptors in the primate brain. Finally, the behavioral consequences of OT and AVP in regulating NWM sociality are summarized, demonstrating important neuromodulatory effects of these compounds and OT ligand-specific influences in certain social domains. PMID:27020799

Modeling and simulation studies of human β3 adrenergic receptor and its interactions with agonists.

PubMed

Sahi, Shakti; Tewatia, Parul; Malik, Balwant K

2012-12-01

β3 adrenergic receptor (β3AR) is known to mediate various pharmacological and physiological effects such as thermogenesis in brown adipocytes, lipolysis in white adipocytes, glucose homeostasis and intestinal smooth muscle relaxation. Several efforts have been made in this field to understand their function and regulation in different human tissues and they have emerged as potential attractive targets in drug discovery for the treatment of diabetes, depression, obesity etc. Although the crystal structures of Bovine Rhodopsin and β2 adrenergic receptor have been resolved, to date there is no three dimensional structural information on β3AR. Our aim in this study was to model 3D structure of β3AR by various molecular modeling and simulation techniques. In this paper, we describe a refined predicted model of β3AR using different algorithms for structure prediction. The structural refinement and minimization of the generated 3D model of β3AR were done by Schrodinger suite 9.1. Docking studies of β3AR model with the known agonists enabled us to identify specific residues, viz, Asp 117, Ser 208, Ser 209, Ser 212, Arg 315, Asn 332, within the β3AR binding pocket, which might play an important role in ligand binding. Receptor ligand interaction studies clearly indicated that these five residues showed strong hydrogen bonding interactions with the ligands. The results have been correlated with the experimental data available. The predicted ligand binding interactions and the simulation studies validate the methods used to predict the 3D-structure.

Accessory mineral U-Th-Pb ages and 40Ar/39Ar eruption chronology, and their bearing on rhyolitic magma evolution in the Pleistocene Coso volcanic field, California

USGS Publications Warehouse

Simon, J.I.; Vazquez, J.A.; Renne, P.R.; Schmitt, A.K.; Bacon, C.R.; Reid, M.R.

2009-01-01

We determined Ar/Ar eruption ages of eight extrusions from the Pleistocene Coso volcanic field, a long-lived series of small volume rhyolitic domes in eastern California. Combined with ion-microprobe dating of crystal ages of zircon and allanite from these lavas and from granophyre geothermal well cuttings, we were able to track the range of magma-production rates over the past 650 ka at Coso. In ??? 230 ka rhyolites we find no evidence of protracted magma residence or recycled zircon (or allanite) from Pleistocene predecessors. A significant subset of zircon in the ???85 ka rhyolites yielded ages between ???100 and 200 Ma, requiring that generation of at least some rhyolites involves material from Mesozoic basement. Similar zircon xenocrysts are found in an ???200 ka granophyre. The new age constraints imply that magma evolution at Coso can occur rapidly as demonstrated by significant changes in rhyolite composition over short time intervals (???10's to 100's ka). In conjunction with radioisotopic age constraints from other young silicic volcanic fields, dating of Coso rhyolites highlights the fact that at least some (and often the more voluminous) rhyolites are produced relatively rapidly, but that many small-volume rhyolites likely represent separation from long-lived mushy magma bodies. ?? The Author(s) 2009.

Targeting Ligand-Dependent and Ligand-Independent Androgen Receptor Signaling in Prostate Cancer

DTIC Science & Technology

2013-10-01

that disrupt more selective classes of LxxLL motifs: for example, we have compounds that can block AR-PELP1 and AR- hsp27 interaction through the LxxLL...motif as well as compounds that only block AR-PELP1 (and not AR- hsp27 ). We believe that these compounds will be critical for ascertaining the...IP: AR Input PELP1 PELP1 AR AR Hsp27 hsp27 10 Planned structural modifications of D2-derived peptidomimetics by docking

Incremental heating of Bishop Tuff sanidine reveals preeruptive radiogenic Ar and rapid remobilization from cold storage

NASA Astrophysics Data System (ADS)

Andersen, Nathan L.; Jicha, Brian R.; Singer, Brad S.; Hildreth, Wes

2017-11-01

Accurate and precise ages of large silicic eruptions are critical to calibrating the geologic timescale and gauging the tempo of changes in climate, biologic evolution, and magmatic processes throughout Earth history. The conventional approach to dating these eruptive products using the 40Ar/39Ar method is to fuse dozens of individual feldspar crystals. However, dispersion of fusion dates is common and interpretation is complicated by increasingly precise data obtained via multicollector mass spectrometry. Incremental heating of 49 individual Bishop Tuff (BT) sanidine crystals produces 40Ar/39Ar dates with reduced dispersion, yet we find a 16-ky range of plateau dates that is not attributable to excess Ar. We interpret this dispersion to reflect cooling of the magma reservoir margins below ˜475 °C, accumulation of radiogenic Ar, and rapid preeruption remobilization. Accordingly, these data elucidate the recycling of subsolidus material into voluminous rhyolite magma reservoirs and the effect of preeruptive magmatic processes on the 40Ar/39Ar system. The youngest sanidine dates, likely the most representative of the BT eruption age, yield a weighted mean of 764.8 ± 0.3/0.6 ka (2σ analytical/full uncertainty) indicating eruption only ˜7 ky following the Matuyama‑Brunhes magnetic polarity reversal. Single-crystal incremental heating provides leverage with which to interpret complex populations of 40Ar/39Ar sanidine and U-Pb zircon dates and a substantially improved capability to resolve the timing and causal relationship of events in the geologic record.

Incremental heating of Bishop Tuff sanidine reveals preeruptive radiogenic Ar and rapid remobilization from cold storage.

PubMed

Andersen, Nathan L; Jicha, Brian R; Singer, Brad S; Hildreth, Wes

2017-11-21

Accurate and precise ages of large silicic eruptions are critical to calibrating the geologic timescale and gauging the tempo of changes in climate, biologic evolution, and magmatic processes throughout Earth history. The conventional approach to dating these eruptive products using the 40 Ar/ 39 Ar method is to fuse dozens of individual feldspar crystals. However, dispersion of fusion dates is common and interpretation is complicated by increasingly precise data obtained via multicollector mass spectrometry. Incremental heating of 49 individual Bishop Tuff (BT) sanidine crystals produces 40 Ar/ 39 Ar dates with reduced dispersion, yet we find a 16-ky range of plateau dates that is not attributable to excess Ar. We interpret this dispersion to reflect cooling of the magma reservoir margins below ∼475 °C, accumulation of radiogenic Ar, and rapid preeruption remobilization. Accordingly, these data elucidate the recycling of subsolidus material into voluminous rhyolite magma reservoirs and the effect of preeruptive magmatic processes on the 40 Ar/ 39 Ar system. The youngest sanidine dates, likely the most representative of the BT eruption age, yield a weighted mean of 764.8 ± 0.3/0.6 ka (2σ analytical/full uncertainty) indicating eruption only ∼7 ky following the Matuyama-Brunhes magnetic polarity reversal. Single-crystal incremental heating provides leverage with which to interpret complex populations of 40 Ar/ 39 Ar sanidine and U-Pb zircon dates and a substantially improved capability to resolve the timing and causal relationship of events in the geologic record.

Effects of alkylresorcinols on volume and structure of yeast-leavened bread.

PubMed

Andersson, Annica Am; Landberg, Rikard; Söderman, Thomas; Hedkvist, Sofie; Katina, Kati; Juvonen, Riikka; Holopainen, Ulla; Lehtinen, Pekka; Aman, Per

2011-01-30

Alkylresorcinols (AR) are amphiphilic phenolic compounds found in high amounts in wheat, durum wheat and rye, with different homologue composition for each cereal. The effect of different amounts of added AR from these cereals on bread volume, height, porosity and microstructure was studied. Breads with added rye bran (with high levels of AR) or acetone-extracted rye bran (with low levels of AR) were also baked, as well as breads with finely milled forms of each of these brans. Breads with high amounts of added AR, irrespective of AR homologue composition, had a lower volume, a more compact structure and an adverse microstructure compared with breads with no or low levels of added AR. AR were also shown to inhibit the activity of baker's yeast. There was no difference in bread volume and porosity between bread baked with rye bran and acetone-extracted rye bran or with brans of different particle size. Irrespective of homologue composition, AR had a negative effect on wheat bread properties when added in high amounts as purified extracts from wheat, durum wheat and rye. Natural levels of AR in rye bran, however, did not affect the volume and porosity of yeast-leavened wheat breads. 2010 Society of Chemical Industry.

Genetic diversity and population structure of the Ethiopian sorghum [Sorghum bicolor (L.) Moench] germplasm collection maintained by the USDA-ARS, National Plant Germplasm System using SSR markers

USDA-ARS?s Scientific Manuscript database

The genetic diversity and population structure present in the Ethiopia sorghum collection maintained by the USDA-ARS, National Plant Germplasm System (USDA-ARS-NPGS) is unknown. In addition, passport information is absent for 83% of these accessions which limit its evaluation and utility. Therefor...

Atmospheric River impacts in British Columbia and the Pacific Northwest on 22-24 January 2015 during the CalWater 2015 field campaign

NASA Astrophysics Data System (ADS)

Gaggini, N. G.; Spackman, J. R.; Neiman, P. J.; White, A. B.; Fairall, C. W.; Barnet, C.; Gambacorta, A.; Hughes, M.

2015-12-01

Over 30 dropsonde transects were performed across atmospheric rivers (ARs) over the eastern Pacific during CalWater 2015. An event in late January allowed first-of-its-kind coordinated dropsonde transects of an AR using the NOAA G-IV aircraft in tandem with the NOAA Ronald H. Brown (RHB), which observed the marine boundary layer during the passage of this major AR. Dropsonde data collected on 22 January 2015 sampled the early stages of the AR, when the AR began making landfall near Vancouver Island, British Columbia. At the same time the RHB collected precipitation and oceanic moisture flux measurements on the warm side of the AR. A second flight on 24 January 2015 sampled the later stages of the AR, again passing over the RHB stationed beneath the AR. During this later period, the AR axis of moisture shifted north-northeast and fanned out along the coast, affecting regions from Northern Washington to Southern Alaska. Multi-day landfalling AR conditions led to flooding in British Columbia and northern Washington. The influence of the coastal orography combined with the shift in AR orientation is examined to understand the orographic control of precipitation that triggered the flooding. In addition, cross section analysis of the AR using dropsonde and reanalysis data are used to better understand the synoptic influences, water vapor transport, and moisture evolution during the lifecycle of the AR. To gain greater insight into AR development and prolonged AR conditions that led to enhanced flooding, a comparison of aircraft and ship data from CalWater 2015 and NOAA Unique CrIS/ATMS Processing System (NUCAPS) retrievals (integrated water vapor, vertical temperature and moisture profiles, and an experimental ATMS-only rain rate product) will be compared for the 22-24 January period.

Structure, replication efficiency and fragility of yeast ARS elements.

PubMed

Dhar, Manoj K; Sehgal, Shelly; Kaul, Sanjana

2012-05-01

DNA replication in eukaryotes initiates at specific sites known as origins of replication, or replicators. These replication origins occur throughout the genome, though the propensity of their occurrence depends on the type of organism. In eukaryotes, zones of initiation of replication spanning from about 100 to 50,000 base pairs have been reported. The characteristics of eukaryotic replication origins are best understood in the budding yeast Saccharomyces cerevisiae, where some autonomously replicating sequences, or ARS elements, confer origin activity. ARS elements are short DNA sequences of a few hundred base pairs, identified by their efficiency at initiating a replication event when cloned in a plasmid. ARS elements, although structurally diverse, maintain a basic structure composed of three domains, A, B and C. Domain A is comprised of a consensus sequence designated ACS (ARS consensus sequence), while the B domain has the DNA unwinding element and the C domain is important for DNA-protein interactions. Although there are ∼400 ARS elements in the yeast genome, not all of them are active origins of replication. Different groups within the genus Saccharomyces have ARS elements as components of replication origin. The present paper provides a comprehensive review of various aspects of ARSs, starting from their structural conservation to sequence thermodynamics. All significant and conserved functional sequence motifs within different types of ARS elements have been extensively described. Issues like silencing at ARSs, their inherent fragility and factors governing their replication efficiency have also been addressed. Progress in understanding crucial components associated with the replication machinery and timing at these ARS elements is discussed in the section entitled "The replicon revisited". Copyright © 2012 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

The interplay of shape and crystalline anisotropies in plasmonic semiconductor nanocrystals

DOE PAGES

Kim, Jongwook; Agrawal, Ankit; Krieg, Franziska; ...

2016-05-16

Doped semiconductor nanocrystals are an emerging class of materials hosting localized surface plasmon resonance (LSPR) over a wide optical range. Studies so far have focused on tuning LSPR frequency by controlling the dopant and carrier concentrations in diverse semiconductor materials. However, the influence of anisotropic nanocrystal shape and of intrinsic crystal structure on LSPR remain poorly explored. Here, we illustrate how these two factors collaborate to determine LSPR characteristics in hexagonal cesium-doped tungsten oxide nanocrystals. The effect of shape anisotropy is systematically analyzed via synthetic control of nanocrystal aspect ratio (AR), from disks to nanorods. We demonstrate the dominant influencemore » of crystalline anisotropy, which uniquely causes strong LSPR band-splitting into two distinct peaks with comparable intensities. Modeling typically used to rationalize particle shape effects is refined by taking into account the anisotropic dielectric function due to crystalline anisotropy, thus fully accounting for the AR-dependent evolution of multiband LSPR spectra. Furthermore, this new insight into LSPR of semiconductor nanocrystals provides a novel strategy for an exquisite tuning of LSPR line shape.« less

3D-Printed Broadband Dielectric Tube Terahertz Waveguide with Anti-Reflection Structure

NASA Astrophysics Data System (ADS)

Vogt, Dominik Walter; Leonhardt, Rainer

2016-11-01

We demonstrate broadband, low loss, and close-to-zero dispersion guidance of terahertz (THz) radiation in a dielectric tube with an anti-reflection structure (AR-tube waveguide) in the frequency range from 0.2 to 1.0 THz. The anti-reflection structure (ARS) consists of close-packed cones in a hexagonal lattice arranged on the outer surface of the tube cladding. The feature size of the ARS is in the order of the wavelength between 0.2 and 1.0 THz. The waveguides are fabricated with the versatile and cost efficient 3D-printing method. Terahertz time-domain spectroscopy (THz-TDS) measurements as well as 3D finite-difference time-domain simulations (FDTD) are performed to extensively characterize the AR-tube waveguides. Spectrograms, attenuation spectra, effective phase refractive indices, and the group-velocity dispersion parameters β 2 of the AR-tube waveguides are presented. Both the experimental and numerical results confirm the extended bandwidth and smaller group-velocity dispersion of the AR-tube waveguide compared to a low loss plain dielectric tube THz waveguide. The AR-tube waveguide prototypes show an attenuation spectrum close to the theoretical limit given by the infinite cladding tube waveguide.

The molecular structures and conformation of o-selenobenzyl fluoride derivatives, ArSeX (Ar=C 6H 4CH 2F; X=CN, Cl, Me): ab initio and DFT calculations

NASA Astrophysics Data System (ADS)

Jeong, Myongho; Kwon, Younghi

2000-10-01

Ab initio and density functional theory methods are applied to investigate the molecular structures, intramolecular orbital interactions, and 19F and 77Se NMR chemical shifts of o-selenobenzyl fluoride derivatives, ArSeX ( Ar= C6H4CH2F; X= CN, Cl, Me) , at both RHF and B3LYP levels with the basis sets 6-311G ∗∗ and 6-311+G ∗∗. There are two stable rotational conformers for ArSeX. The energy differences between both conformers for each compound are small (within 2 kcal/mol) at various levels.

Technology advancement of the electrochemical CO2 concentrating process

NASA Technical Reports Server (NTRS)

Schubert, F. H.; Woods, R. R.; Hallick, T. M.; Heppner, D. B.

1978-01-01

The overall objectives of the present program are to: (1) improve the performance of the electrochemical CO2 removal technique by increasing CO2 removal efficiencies at pCO2 levels below 400 Pa, increasing cell power output and broadening the tolerance of electrochemical cells for operation over wide ranges of cabin relative humidity; (2) design, fabricate, and assemble development hardware to continue the evolution of the electrochemical concentrating technique from the existing level to an advanced level able to efficiently meet the CO2 removal needs of a spacecraft air revitalization system (ARS); (3) develop and incorporate into the EDC the components and concepts that allow for the efficient integration of the electrochemical technique with other subsystems to form a spacecraft ARS; (4) combine ARS functions to enable the elimination of subsystem components and interfaces; and (5) demonstrate the integration concepts through actual operation of a functionally integrated ARS.

RBS-channeling study of radiation damage in Ar{sup +} implanted CuInSe{sub 2} crystals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yakushev, Michael V., E-mail: michael.yakushev@strath.ac.uk; Ural Federal University, Ekaterinburg 620002; Institute of Solid State Chemistry of the Urals Branch of RAS, Ekaterinburg 620990

2016-09-15

Chalcopyrite solar cells are reported to have a high tolerance to irradiation by high energy electrons or ions, but the origin of this is not well understood. This work studies the evolution of damage in Ar{sup +}-bombarded CuInSe{sub 2} single crystal using Rutherford backscattering/channeling analysis. Ar{sup +} ions of 30 keV were implanted with doses in the range from 10{sup 12} to 3 × 10{sup 16} cm{sup −2} at room temperature. Implantation was found to create two layers of damage: (1) on the surface, caused by preferential sputtering of Se and Cu atoms; (2) at the layer of implanted Ar, possibly consisting of stackingmore » faults and dislocation loops. The damage in the second layer was estimated to be less than 2% of the theoretical prediction suggesting efficient healing of primary implantation defects.« less

Functional Characterization of Paralogous Gonadotropin-Releasing Hormone-Type and Corazonin-Type Neuropeptides in an Echinoderm

PubMed Central

Tian, Shi; Egertová, Michaela; Elphick, Maurice R.

2017-01-01

Homologs of the vertebrate neuropeptide gonadotropin-releasing hormone (GnRH) have been identified in invertebrates, including the insect neuropeptide corazonin (CRZ). Recently, we reported the discovery of GnRH-type and CRZ-type signaling systems in an echinoderm, the starfish Asterias rubens, demonstrating that the evolutionary origin of paralogous GnRH-type and CRZ-type neuropeptides can be traced back to the common ancestor of protostomes and deuterostomes. Here, we have investigated the physiological roles of the GnRH-type (ArGnRH) and the CRZ-type (ArCRZ) neuropeptides in A. rubens, using mRNA in situ hybridization, immunohistochemistry and in vitro pharmacology. ArGnRH precursor (ArGnRHP)-expressing cells and ArGnRH-immunoreactive cells and/or processes are present in the radial nerve cords, circumoral nerve ring, digestive system (e.g., cardiac stomach and pyloric stomach), body wall-associated muscle (apical muscle), and appendages (tube feet, terminal tentacle). The general distribution of ArCRZ precursor (ArCRZP)-expressing cells is similar to that of ArGnRHP, but with specific local differences. For example, cells expressing ArGnRHP are present in both the ectoneural and hyponeural regions of the radial nerve cords and circumoral nerve ring, whereas cells expressing ArCRZP were only observed in the ectoneural region. In vitro pharmacological experiments revealed that both ArGnRH and ArCRZ cause contraction of cardiac stomach, apical muscle, and tube foot preparations. However, ArGnRH was more potent/effective than ArCRZ as a contractant of the cardiac stomach, whereas ArCRZ was more potent/effective than ArGnRH as a contractant of the apical muscle. These findings demonstrate that both ArGnRH and ArCRZ are myoexcitatory neuropeptides in starfish, but differences in their expression patterns and pharmacological activities are indicative of distinct physiological roles. This is the first study to investigate the physiological roles of both GnRH-type and CRZ-type neuropeptides in a deuterostome, providing new insights into the evolution and comparative physiology of these paralogous neuropeptide signaling systems in the Bilateria. PMID:29033898

Structural characterization of framework-gas interactions in the metal-organic framework Co2(dobdc) by in situ single-crystal X-ray diffraction.

PubMed

Gonzalez, Miguel I; Mason, Jarad A; Bloch, Eric D; Teat, Simon J; Gagnon, Kevin J; Morrison, Gregory Y; Queen, Wendy L; Long, Jeffrey R

2017-06-01

The crystallographic characterization of framework-guest interactions in metal-organic frameworks allows the location of guest binding sites and provides meaningful information on the nature of these interactions, enabling the correlation of structure with adsorption behavior. Here, techniques developed for in situ single-crystal X-ray diffraction experiments on porous crystals have enabled the direct observation of CO, CH 4 , N 2 , O 2 , Ar, and P 4 adsorption in Co 2 (dobdc) (dobdc 4- = 2,5-dioxido-1,4-benzenedicarboxylate), a metal-organic framework bearing coordinatively unsaturated cobalt(ii) sites. All these molecules exhibit such weak interactions with the high-spin cobalt(ii) sites in the framework that no analogous molecular structures exist, demonstrating the utility of metal-organic frameworks as crystalline matrices for the isolation and structural determination of unstable species. Notably, the Co-CH 4 and Co-Ar interactions observed in Co 2 (dobdc) represent, to the best of our knowledge, the first single-crystal structure determination of a metal-CH 4 interaction and the first crystallographically characterized metal-Ar interaction. Analysis of low-pressure gas adsorption isotherms confirms that these gases exhibit mainly physisorptive interactions with the cobalt(ii) sites in Co 2 (dobdc), with differential enthalpies of adsorption as weak as -17(1) kJ mol -1 (for Ar). Moreover, the structures of Co 2 (dobdc)·3.8N 2 , Co 2 (dobdc)·5.9O 2 , and Co 2 (dobdc)·2.0Ar reveal the location of secondary (N 2 , O 2 , and Ar) and tertiary (O 2 ) binding sites in Co 2 (dobdc), while high-pressure CO 2 , CO, CH 4 , N 2 , and Ar adsorption isotherms show that these binding sites become more relevant at elevated pressures.

The Plio-Quaternary Volcanic Evolution of Gran Canaria Based on new Unspiked K-Ar ages and Magnetostratigraphy

NASA Astrophysics Data System (ADS)

Guillou, H.; Carracedo, J.; Perez Torrado, F.

2003-12-01

The combined use of radioisotopic dating, magnetostratigraphy and field geology is a powerful tool to provide reliable chronological frameworks of volcanic edifices. This approach has been used to investigate the last two stages of the volcanic evolution of Gran Canaria. Fifty samples were dated using the unspiked K-Ar method and had their magnetic polarity measured both in the field and in laboratory. Ages were compared to their stratigraphic positions and magnetic polarities before accepting their validity. The unspiked K-Ar chronology constrains the timing of lateral collapses, eruption rates and the contemporaneity of different volcano-magmatic stages at Gran Canaria. Our new data set modifies significantly the previous chronological framework of Gran Canaria, especially between 4 and 2.8 Ma. Based on these new ages, we can bracket the age of the multiple lateral collapses of the Roque Nublo stratovolcano flanks between 3.5 and 3.1 Ma .This time interval corresponds to a main period of volcanic quiescence. Calculated eruptive rates during the stratovolcano edification are about 0.1 km3/kyr which is significantly lower than the published estimates. The dating also reveals that the two main last stages are not separated by a major time gap, but that the early stages of the rift forming eruption and the vanishing activity of the Roque Nublo strato-volcano were contemporaneous for at least 600 kyrs. These results support that our combined approach provides a rapid first-pass and reliable geochronology. Nevertheless, this chronology can be amplified and made more precise where necessary through detailed Ar-Ar incremental-heating methods. Samples which should be investigated using this method are the oldest and youngest K-Ar dated flows of each volcanic stage, and samples from stratigraphic sections that hold potential to study the behaviour of the earth's magnetic field during reversals (Gauss-Gilbert transition, Olduvai and Reunion events).

Argon behaviour in an inverted Barrovian sequence, Sikkim Himalaya: The consequences of temperature and timescale on 40Ar/39Ar mica geochronology

NASA Astrophysics Data System (ADS)

Mottram, Catherine M.; Warren, Clare J.; Halton, Alison M.; Kelley, Simon P.; Harris, Nigel B. W.

2015-12-01

40Ar/39Ar dating of metamorphic rocks sometimes yields complicated datasets which are difficult to interpret in terms of timescales of the metamorphic cycle. Single-grain fusion and step-heating data were obtained for rocks sampled through a major thrust-sense shear zone (the Main Central Thrust) and the associated inverted metamorphic zone in the Sikkim region of the eastern Himalaya. This transect provides a natural laboratory to explore factors influencing apparent 40Ar/39Ar ages in similar lithologies at a variety of metamorphic pressure and temperature (P-T) conditions. The 40Ar/39Ar dataset records progressively younger apparent age populations and a decrease in within-sample dispersion with increasing temperature through the sequence. The white mica populations span 2-9 Ma within each sample in the structurally lower levels (garnet grade) but only 0-3 Ma at structurally higher levels (kyanite-sillimanite grade). Mean white mica single-grain fusion population ages vary from 16.2 ± 3.9 Ma (2σ) to 13.2 ± 1.3 Ma (2σ) from lowest to highest levels. White mica step-heating data from the same samples yields plateau ages from 14.27 ± 0.13 Ma to 12.96 ± 0.05 Ma. Biotite yield older apparent age populations with mean single-grain fusion dates varying from 74.7 ± 11.8 Ma (2σ) at the lowest structural levels to 18.6 ± 4.7 Ma (2σ) at the highest structural levels; the step-heating plateaux are commonly disturbed. Temperatures > 600 °C at pressures of 0.4-0.8 GPa sustained over > 5 Ma, appear to be required for white mica and biotite ages to be consistent with diffusive, open-system cooling. At lower temperatures, and/or over shorter metamorphic timescales, more 40Ar is retained than results from simple diffusion models suggest. Diffusion modelling of Ar in white mica from the highest structural levels suggests that the high-temperature rocks cooled at a rate of 50-80 °C Ma- 1, consistent with rapid thrusting, extrusion and exhumation along the Main Central Thrust during the mid-Miocene.

Crystal structure of the adenosine A 2A receptor bound to an antagonist reveals a potential allosteric pocket

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sun, Bingfa; Bachhawat, Priti; Chu, Matthew Ling-Hon

The adenosine A2A receptor (A2AR) has long been implicated in cardiovascular disorders. As more selective A2AR ligands are being identified, its roles in other disorders, such as Parkinson’s disease, are starting to emerge, and A2AR antagonists are important drug candidates for nondopaminergic anti-Parkinson treatment. Here we report the crystal structure of A2A receptor bound to compound 1 (Cmpd-1), a novel A2AR/N-methyl D-aspartate receptor subtype 2B (NR2B) dual antagonist and potential anti-Parkinson candidate compound, at 3.5 Å resolution. The A2A receptor with a cytochrome b562-RIL (BRIL) fusion (A2AR–BRIL) in the intracellular loop 3 (ICL3) was crystallized in detergent micelles using vapor-phasemore » diffusion. Whereas A2AR–BRIL bound to the antagonist ZM241385 has previously been crystallized in lipidic cubic phase (LCP), structural differences in the Cmpd-1–bound A2AR–BRIL prevented formation of the lattice observed with the ZM241385–bound receptor. The crystals grew with a type II crystal lattice in contrast to the typical type I packing seen from membrane protein structures crystallized in LCP. Cmpd-1 binds in a position that overlaps with the native ligand adenosine, but its methoxyphenyl group extends to an exosite not previously observed in other A2AR structures. Structural analysis revealed that Cmpd-1 binding results in the unique conformations of two tyrosine residues, Tyr91.35 and Tyr2717.36, which are critical for the formation of the exosite. The structure reveals insights into antagonist binding that are not observed in other A2AR structures, highlighting flexibility in the binding pocket that may facilitate the development of A2AR-selective compounds for the treatment of Parkinson’s disease.« less

Parametric computational study of sheaths in multicomponent Ar/O2 plasma

NASA Astrophysics Data System (ADS)

Hromadka, J.; Ibehej, T.; Hrach, R.

2018-02-01

Our study is devoted to sheath structures emerging in Ar/O2 plasma. By means of two dimensional PIC/MCC computer model two configurations were investigated - sheath structure in the vicinity of a cylindrical Langmuir probe for two different biases and changes of the sheath structure when a cylindrical probe passes into a semi-planar probe. It was shown that O+ ions play important role in shielding out negative bias of a solid immersed in Ar/O2 plasma and edge effects of a semi-planar probe on its sheath structure were evaluated.

Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales

PubMed Central

Makarova, Kira S.; Wolf, Yuri I.; Koonin, Eugene V.

2015-01-01

With the continuously accelerating genome sequencing from diverse groups of archaea and bacteria, accurate identification of gene orthology and availability of readily expandable clusters of orthologous genes are essential for the functional annotation of new genomes. We report an update of the collection of archaeal Clusters of Orthologous Genes (arCOGs) to cover, on average, 91% of the protein-coding genes in 168 archaeal genomes. The new arCOGs were constructed using refined algorithms for orthology identification combined with extensive manual curation, including incorporation of the results of several completed and ongoing research projects in archaeal genomics. A new level of classification is introduced, superclusters that unit two or more arCOGs and more completely reflect gene family evolution than individual, disconnected arCOGs. Assessment of the current archaeal genome annotation in public databases indicates that consistent use of arCOGs can significantly improve the annotation quality. In addition to their utility for genome annotation, arCOGs also are a platform for phylogenomic analysis. We explore this aspect of arCOGs by performing a phylogenomic study of the Thermococci that are traditionally viewed as the basal branch of the Euryarchaeota. The results of phylogenomic analysis that involved both comparison of multiple phylogenetic trees and a search for putative derived shared characters by using phyletic patterns extracted from the arCOGs reveal a likely evolutionary relationship between the Thermococci, Methanococci, and Methanobacteria. The arCOGs are expected to be instrumental for a comprehensive phylogenomic study of the archaea. PMID:25764277

FLUX CANCELLATION AND THE EVOLUTION OF THE ERUPTIVE FILAMENT OF 2011 JUNE 7

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yardley, S. L.; Green, L. M.; Williams, D. R.

We investigate whether flux cancellation is responsible for the formation of a very massive filament resulting in the spectacular eruption on 2011 June 7. We analyze and quantify the amount of flux cancellation that occurs in NOAA AR 11226 and its two neighboring active regions (ARs 11227 and 11233) using line-of-sight magnetograms from the Heliospheric Magnetic Imager. During a 3.6 day period building up to the eruption of the filament, 1.7 × 10{sup 21} Mx, 21% of AR 11226's maximum magnetic flux, was canceled along the polarity inversion line (PIL) where the filament formed. If the flux cancellation continued atmore » the same rate up until the eruption then up to 2.8 × 10{sup 21} Mx (34% of the AR flux) may have been built into the magnetic configuration that contains the filament plasma. The large flux cancellation rate is due to an unusual motion of the positive-polarity sunspot, which splits, with the largest section moving rapidly toward the PIL. This motion compresses the negative polarity and leads to the formation of an orphan penumbra where one end of the filament is rooted. Dense plasma threads above the orphan penumbra build into the filament, extending its length, and presumably injecting material into it. We conclude that the exceptionally strong flux cancellation in AR 11226 played a significant role in the formation of its unusually massive filament. In addition, the presence and coherent evolution of bald patches in the vector magnetic field along the PIL suggest that the magnetic field configuration supporting the filament material is that of a flux rope.« less

Overview of radiometric ages in three allochthonous belts of Northern Venezuela: Old ones, new ones, and their impact on regional geology

USGS Publications Warehouse

Sisson, V.B.; Ave Lallemant, H.G.; Ostos, M.; Blythe, A.E.; Snee, L.W.; Copeland, Peter; Wright, J.E.; Donelick, R.A.; Guth, L.R.

2005-01-01

The margin of northern Venezuela is a complex zone representing the orogenic events from basement formation to subsequent subduction and exhumation during transpressional collision. This boundary zone has six east-west-trending belts that each record a different segment of its development. This geologic complexity requires radiometric ages to unravel, and we herein provide 48 new ages including U-Pb (4), Rb-Sr (2), 40Ar/39Ar (24), zircon and apatite fission-track (17), and 14C (1) ages to constrain the evolution of three of these belts. These three belts are the Cordillera de la Costa, Caucagua-El Tinaco, and Serran??a del Interior belts. In the Cordillera de la Costa belt, U-Pb geochronologic data indicate portions of the basement igneous and metaigneous rocks formed in the Cambro-Ordovician (513-471 Ma). New 40Ar/39Ar data from Margarita Island indicate that some of the subduction complex was rapidly cooled and exhumed, whereas other portions indicate slower cooling. This contrasts with new 40Ar/39Ar data from the Puerto Cabello. ?? 2005 Geological Society of America.

Physical Characteristics of AR 11024 Plasma Based on SPHINX and XRT Data

NASA Astrophysics Data System (ADS)

Sylwester, B.; Sylwester, J.; Siarkowski, M.; Engell, A. J.; Kuzin, S. V.

We have studied the evolution of basic physical properties of plasma within the coronal part of the isolated, new cycle region (AR 11024) during its crossing over the solar disc in July 2009. Our analysis is based on the high temporal and spectral resolution measurements performed by the Polish X-ray spectrometer SphinX onboard the CORONAS-Photon satellite. Hinode XRT images provide information on spatial extension of the emission within this active region. It is found that the average temperature of the plasma within the analysed region is the highest (˜6 MK) when the region is young and gradually declines to ˜2 MK when the emission measure is the highest. An average density during this first part of the evolution is estimated to be ˜2 x 10^9 cm^{-3}.

Conserved Binding Mode of Human [beta subscript 2] Adrenergic Receptor Inverse Agonists and Antagonist Revealed by X-ray Crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wacker, Daniel; Fenalti, Gustavo; Brown, Monica A.

2010-11-15

G protein-coupled receptors (GPCRs) represent a large fraction of current pharmaceutical targets, and of the GPCRs, the {beta}{sub 2} adrenergic receptor ({beta}{sub 2}AR) is one of the most extensively studied. Previously, the X-ray crystal structure of {beta}{sub 2}AR has been determined in complex with two partial inverse agonists, but the global impact of additional ligands on the structure or local impacts on the binding site are not well-understood. To assess the extent of such ligand-induced conformational differences, we determined the crystal structures of a previously described engineered {beta}{sub 2}AR construct in complex with two inverse agonists: ICI 118,551 (2.8 {angstrom}),more » a recently described compound (2.8 {angstrom}) (Kolb et al, 2009), and the antagonist alprenolol (3.1 {angstrom}). The structures show the same overall fold observed for the previous {beta}{sub 2}AR structures and demonstrate that the ligand binding site can accommodate compounds of different chemical and pharmacological properties with only minor local structural rearrangements. All three compounds contain a hydroxy-amine motif that establishes a conserved hydrogen bond network with the receptor and chemically diverse aromatic moieties that form distinct interactions with {beta}{sub 2}AR. Furthermore, receptor ligand cross-docking experiments revealed that a single {beta}{sub 2}AR complex can be suitable for docking of a range of antagonists and inverse agonists but also indicate that additional ligand-receptor structures may be useful to further improve performance for in-silico docking or lead-optimization in drug design.« less

Identification and Characterization of ART-27, a Novel Coactivator for the Androgen Receptor N Terminus

PubMed Central

Markus, Steven M.; Taneja, Samir S.; Logan, Susan K.; Li, Wenhui; Ha, Susan; Hittelman, Adam B.; Rogatsky, Inez; Garabedian, Michael J.

2002-01-01

The androgen receptor (AR) is a ligand-regulated transcription factor that stimulates cell growth and differentiation in androgen-responsive tissues. The AR N terminus contains two activation functions (AF-1a and AF-1b) that are necessary for maximal transcriptional enhancement by the receptor; however, the mechanisms and components regulating AR transcriptional activation are not fully understood. We sought to identify novel factors that interact with the AR N terminus from an androgen-stimulated human prostate cancer cell library using a yeast two-hybrid approach designed to identify proteins that interact with transcriptional activation domains. A 157-amino acid protein termed ART-27 was cloned and shown to interact predominantly with the AR153–336, containing AF-1a and a part of AF-1b, localize to the nucleus and increase the transcriptional activity of AR when overexpressed in cultured mammalian cells. ART-27 also enhanced the transcriptional activation by AR153–336 fused to the LexA DNA-binding domain but not other AR N-terminal subdomains, suggesting that ART-27 exerts its effect via an interaction with a defined region of the AR N terminus. ART-27 interacts with AR in nuclear extracts from LNCaP cells in a ligand-independent manner. Interestingly, velocity gradient sedimentation of HeLa nuclear extracts suggests that native ART-27 is part of a multiprotein complex. ART-27 is expressed in a variety of human tissues, including sites of androgen action such as prostate and skeletal muscle, and is conserved throughout evolution. Thus, ART-27 is a novel cofactor that interacts with the AR N terminus and plays a role in facilitating receptor-induced transcriptional activation. PMID:11854421

Identification and characterization of ART-27, a novel coactivator for the androgen receptor N terminus.

PubMed

Markus, Steven M; Taneja, Samir S; Logan, Susan K; Li, Wenhui; Ha, Susan; Hittelman, Adam B; Rogatsky, Inez; Garabedian, Michael J

2002-02-01

The androgen receptor (AR) is a ligand-regulated transcription factor that stimulates cell growth and differentiation in androgen-responsive tissues. The AR N terminus contains two activation functions (AF-1a and AF-1b) that are necessary for maximal transcriptional enhancement by the receptor; however, the mechanisms and components regulating AR transcriptional activation are not fully understood. We sought to identify novel factors that interact with the AR N terminus from an androgen-stimulated human prostate cancer cell library using a yeast two-hybrid approach designed to identify proteins that interact with transcriptional activation domains. A 157-amino acid protein termed ART-27 was cloned and shown to interact predominantly with the AR(153-336), containing AF-1a and a part of AF-1b, localize to the nucleus and increase the transcriptional activity of AR when overexpressed in cultured mammalian cells. ART-27 also enhanced the transcriptional activation by AR(153-336) fused to the LexA DNA-binding domain but not other AR N-terminal subdomains, suggesting that ART-27 exerts its effect via an interaction with a defined region of the AR N terminus. ART-27 interacts with AR in nuclear extracts from LNCaP cells in a ligand-independent manner. Interestingly, velocity gradient sedimentation of HeLa nuclear extracts suggests that native ART-27 is part of a multiprotein complex. ART-27 is expressed in a variety of human tissues, including sites of androgen action such as prostate and skeletal muscle, and is conserved throughout evolution. Thus, ART-27 is a novel cofactor that interacts with the AR N terminus and plays a role in facilitating receptor-induced transcriptional activation.

SOLAR MULTIPLE ERUPTIONS FROM A CONFINED MAGNETIC STRUCTURE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Jeongwoo; Chae, Jongchul; Liu, Chang

2016-09-20

How eruption can recur from a confined magnetic structure is discussed based on the Solar Dynamics Observatory observations of the NOAA active region 11444, which produced three eruptions within 1.5 hr on 2012 March 27. The active region (AR) had the positive-polarity magnetic fields in the center surrounded by the negative-polarity fields around. Since such a distribution of magnetic polarity tends to form a dome-like magnetic fan structure confined over the AR, the multiple eruptions were puzzling. Our investigation reveals that this event exhibits several properties distinct from other eruptions associated with magnetic fan structures: (i) a long filament encirclingmore » the AR was present before the eruptions; (ii) expansion of the open–closed boundary (OCB) of the field lines after each eruption was suggestive of the growing fan-dome structure, and (iii) the ribbons inside the closed magnetic polarity inversion line evolved in response to the expanding OCB. It thus appears that in spite of multiple eruptions the fan-dome structure remained undamaged, and the closing back field lines after each eruption rather reinforced the fan-dome structure. We argue that the multiple eruptions could occur in this AR in spite of its confined magnetic structure because the filament encircling the AR was adequate for slipping through the magnetic separatrix to minimize the damage to its overlying fan-dome structure. The result of this study provides a new insight into the productivity of eruptions from a confined magnetic structure.« less

Increased phospho-AKT is associated with loss of the androgen receptor during the progression of N-methyl-N-nitrosourea-induced prostate carcinogenesis in rats.

PubMed

Liao, Zhiming; Wang, Shihua; Boileau, Thomas W-M; Erdman, John W; Clinton, Steven K

2005-07-01

Characterization of molecular events during N-methyl-N-nitrosourea (MNU)-induced rat prostate carcinogenesis enhances the utility of this model for the preclinical assessment of preventive strategies. Androgen independence is typical of advanced human prostate cancer and may occur through multiple mechanisms including the loss of androgen receptor (AR) expression and the activation of alternative signaling pathways. We examined the interrelationships between AR and p-AKT expression by immunohistochemical staining during MNU-androgen-induced prostate carcinogenesis in male Wistar-Unilever rats. Histone nuclear staining and image analysis was employed to assess parallel changes in chromatin and nuclear structure. The percentage of AR positive nuclei decreased (P < 0.01) as carcinogenesis progressed: hyperplasia (92%), atypical hyperplasia (92%), well-differentiated adenocarcinoma (57%), moderately-differentiated adenocarcinoma (19%), and poorly-differentiated adenocarcinoma (10%). Conversely, p-AKT staining increased significantly during carcinogenesis. Sparse staining was observed in normal tissues (0.2% of epithelial area) and hyperplastic lesions (0.1%), while expression increased significantly (P < 0.001) in atypical hyperplasia (7.6%), well-differentiated adenocarcinoma (16.7%), moderately-differentiated adenocarcinoma (19.6%), and poorly-differentiated adenocarcinoma (17.4%). In parallel, nuclear morphometry revealed increased nuclear size, greater irregularity, and lower DNA compactness as cancers became more poorly differentiated. In the MNU model, the progressive evolution of dominant tumor cell populations showing an increase in p-AKT in parallel with a decline in AR staining suggests that activation of AKT signaling may be one of several mechanisms contributing to androgen insensitivity during prostate cancer progression. Our observations mimic findings suggested by human studies and support the relevance of the MNU model in preclinical studies of preventive strategies. (c) 2005 Wiley-Liss, Inc.

Normal and grazing incidence pulsed laser deposition of nanostructured MoSx hydrogen evolution catalysts from a MoS2 target

NASA Astrophysics Data System (ADS)

Fominski, V. Yu.; Romanov, R. I.; Fominski, D. V.; Dzhumaev, P. S.; Troyan, I. A.

2018-06-01

Pulsed laser ablation of a MoS2 target causes enhanced splashing of the material. So, for MoSx films obtained by pulsed laser deposition (PLD) in the conventional normal incidence (NI) configuration, their typical morphology is characterized by an underlying granular structure with an overlayer of widely dispersed spherical Mo and MoSx particles possessing micro-, sub-micro- and nanometer sizes. We investigated the possibility of using high surface roughness, which occurs due to particle deposition, as a support with a large exposed surface area for thin MoSx catalytic layers for the hydrogen evolution reaction (HER). For comparison, the HER performance of MoSx layers formed by grazing incidence (GI) PLD was studied. During GI-PLD, a substrate was placed along the direction of laser plume transport and few large particles loaded the substrate. The local structure and composition of thin MoSx layers formed by the deposition of the vapor component of the laser plume were varied by changing the pressure of the buffer gas (argon, Ar). In the case of NI-PLD, an increase in Ar pressure caused the formation of quasi-amorphous MoSx (x ≥ 2) films that possessed highly active catalytic sites on the edges of the layered MoS2 nanophase. At the same time, a decrease in the deposition rate of the MoSx film appeared due to the scattering of the vapor flux by Ar molecules during flux transport from the target to the substrate. This effect prevented uniform deposition of the MoSx catalytic film on the surface of most particles, whose deposition rate was independent of Ar pressure. The scattered vapor flux containing Mo and S atoms was a dominant source for MoSx film growth during GI-PLD. The thickness and composition distribution of the MoSx film on the substrate depended on both the pressure of the buffer gas and the distance from the target. For 1.0-2.5 cm from the target, the deposition rate was quite sufficient to form S-enriched quasi-amorphous MoSx (2.5 < x < 6) catalytic films that consisted of densely packed 30-50 nm nanoparticles. The GI-PLD films possessed a greater density of catalytically active sites with a distinct local atomic configuration including edge sites of the layered MoS2 nanophase and diverse S ligands in the amorphous phase, which contained Mo3-S clusters. At a modest loading of ∼300 μg/cm2 on glassy carbon substrates and an overpotential of -140 mV, these films activated H2 production with geometric current densities up to -10 mA/cm2.

Structure and composition of the neutral upper atmosphere of Mars from the MAVEN NGIMS investigation

PubMed Central

Benna, M.; Elrod, M.; Yelle, R. V.; Bougher, S. W.; Stone, S. W.; Jakosky, B. M.

2015-01-01

Abstract The Mars Atmosphere and Volatile EvolutioN (MAVEN) Neutral Gas and Ion Mass Spectrometer (NGIMS) provides sensitive detections of neutral gas and ambient ion composition. NGIMS measurements of nine atomic and molecular neutral species, and their variation with altitude, latitude, and solar zenith angle are reported over several months of operation of the MAVEN mission. Sampling NGIMS signals from multiple neutral species every several seconds reveals persistent and unexpectedly large amplitude density structures. The scale height temperatures are mapped over the course of the first few months of the mission from high down to midlatitudes. NGIMS measurements near the homopause of 40Ar/N2 ratios agree with those reported by the Sample Analysis at Mars investigation and allow the altitude of the homopause for the most abundant gases to be established. PMID:27667873

Rhyolitic tephra record of the Gona region, southern Afar Rift, Ethiopia: Characteristics correlation and chronology

NASA Astrophysics Data System (ADS)

Dunbar, N. W.; Brown, F. H.; Levin, N. E.; McIntosh, W. C.; Rogers, M.; Semaw, S.; Simpson, S. W.; Stinchcomb, G. E.

2016-12-01

The Gona region, on the western flank of the southern Afar Rift, in Ethiopia, contains a rich and complex tephra record that provides insight into structural evolution of the region and chronological controls on the local record of human evolution. Despite lack of source volcanoes in the Gona region, thick (up to 80 cm), fine-grained (20-500 µm), fresh, pure, glassy distal tephra layers, which are discontinuous and appear to have undergone significant secondary thickening shortly after deposition, are present in sediments deposited in the last two million years. Altered tephra are present in older sediments. New data are consistent with those reported by Quade et al. (2008), showing that tephra from Gona are typically rhyolitic, consistent with derivation from large, but distant volcanic eruptions. Significant geochemical variation is observed between different tephra layers, particularly with respect to FeO (ranging between 2 and 7.5 wt.% in different rhyolitic tephra), Ca, Mn, and Cl. Elements Na and K are variable, consistent with alkali mobility during glass hydration. Although some tephra layers contain feldspar and are thus datable using the 40Ar/39Ar, others are not directly datable, so must be geochemically linked to dated source eruptions. A unit of particular focus is the widespread marker tuff known locally as the Boolihinan tuff, which is associated with significant hominin fossils and artifacts. This locally aphyric unit, which consists of highly expanded rhyolitic glass, exhibits some geochemical variability, particularly with respect to SiO2 (74-78 wt.%), but yields a robust compositions with respect to Fe, Ca, Mn, and Cl. The Boolihinan tuff was previously tentatively correlated to a 1.6 Ma tephra found in DSDP core DEM-4-1. However, we suggest here a more robust correlation to two samples of an unwelded ignimbrite with 40Ar/39Ar ages of 1.281±0.061 and 1.253±0.041 (27-01 and 27-05 of Morgan et al., 2012) from the Melka Kunture area, which is over 300 km from the Gona field area. The Boolihinan tuff is interpreted to be the ashfall equivalent of the unwelded ignimbrite. This correlation provides a chronological marker which in turn provides improved age constraints to the fossils and artifacts at Gona that are found in association with this tephra.

Substituent effects that control conjugated oligomer conformation through non-covalent interactions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sharber, Seth A.; Baral, Rom Nath; Frausto, Fanny

Although understanding the conformations and arrangements of conjugated materials as solids is key to their prospective applications, predictive power over these structural factors remains elusive. In this work, substituent effects tune non-covalent interactions between side-chain fluorinated benzyl esters and main-chain terminal arenes, in turn controlling the conformations and interchromophore aggregation of three-ring phenylene-ethynylenes (PEs). Cofacial fluoroarene–arene (ArF–ArH) interactions cause twisting in the PE backbone, interrupting intramolecular conjugation as well as blocking chromophore aggregation, both of which prevent the typically observed bathochromic shift observed upon transitioning PEs from solution to solid. This work highlights two structural factors that determine whether themore » ArF–ArH interactions, and the resulting twisted, unaggregated chromophores, occur in these solids: (i) the electron-releasing characteristic of substituents on ArH, with more electron-releasing character favoring ArF–ArH interactions, and (ii) the fluorination pattern of the ArF ring, with 2,3,4,5,6-pentafluorophenyl favoring ArF–ArH interactions over 2,4,6-trifluorophenyl. Furthermore, these trends indicate that considerations of electrostatic complementarity, whether through a polar-π or substituent–substituent mechanism, can serve as an effective design principle in controlling the interaction strengths, and therefore the optoelectronic properties, of these molecules as solids.« less

Substituent effects that control conjugated oligomer conformation through non-covalent interactions

DOE PAGES

Sharber, Seth A.; Baral, Rom Nath; Frausto, Fanny; ...

2017-03-31

Although understanding the conformations and arrangements of conjugated materials as solids is key to their prospective applications, predictive power over these structural factors remains elusive. In this work, substituent effects tune non-covalent interactions between side-chain fluorinated benzyl esters and main-chain terminal arenes, in turn controlling the conformations and interchromophore aggregation of three-ring phenylene-ethynylenes (PEs). Cofacial fluoroarene–arene (ArF–ArH) interactions cause twisting in the PE backbone, interrupting intramolecular conjugation as well as blocking chromophore aggregation, both of which prevent the typically observed bathochromic shift observed upon transitioning PEs from solution to solid. This work highlights two structural factors that determine whether themore » ArF–ArH interactions, and the resulting twisted, unaggregated chromophores, occur in these solids: (i) the electron-releasing characteristic of substituents on ArH, with more electron-releasing character favoring ArF–ArH interactions, and (ii) the fluorination pattern of the ArF ring, with 2,3,4,5,6-pentafluorophenyl favoring ArF–ArH interactions over 2,4,6-trifluorophenyl. Furthermore, these trends indicate that considerations of electrostatic complementarity, whether through a polar-π or substituent–substituent mechanism, can serve as an effective design principle in controlling the interaction strengths, and therefore the optoelectronic properties, of these molecules as solids.« less

Classification of damage in structural systems using time series analysis and supervised and unsupervised pattern recognition techniques

NASA Astrophysics Data System (ADS)

Omenzetter, Piotr; de Lautour, Oliver R.

2010-04-01

Developed for studying long, periodic records of various measured quantities, time series analysis methods are inherently suited and offer interesting possibilities for Structural Health Monitoring (SHM) applications. However, their use in SHM can still be regarded as an emerging application and deserves more studies. In this research, Autoregressive (AR) models were used to fit experimental acceleration time histories from two experimental structural systems, a 3- storey bookshelf-type laboratory structure and the ASCE Phase II SHM Benchmark Structure, in healthy and several damaged states. The coefficients of the AR models were chosen as damage sensitive features. Preliminary visual inspection of the large, multidimensional sets of AR coefficients to check the presence of clusters corresponding to different damage severities was achieved using Sammon mapping - an efficient nonlinear data compression technique. Systematic classification of damage into states based on the analysis of the AR coefficients was achieved using two supervised classification techniques: Nearest Neighbor Classification (NNC) and Learning Vector Quantization (LVQ), and one unsupervised technique: Self-organizing Maps (SOM). This paper discusses the performance of AR coefficients as damage sensitive features and compares the efficiency of the three classification techniques using experimental data.

The Measurement of the Evaporation Residues Excitation Functions in the Fusion Reactions 144Sm (40Ar,xn) and 166Er(40Ar,xn)

NASA Astrophysics Data System (ADS)

Chernysheva, E. V.; Rodin, A. M.; Belozerov, A. V.; Dmitriev, S. N.; Gulyaev, A. V.; Gulyaeva, A. V.; Itkis, M. G.; Novoselov, A. S.; Oganessian, Yu. Ts.; Salamatin, V. S.; Stepantsov, S. V.; Vedeneev, V. Yu.; Yukhimchuk, S. A.; Krupa, L.; Kliman, J.; Motycak, S.; Sivacek, I.

2015-06-01

The evaporation residues excitation functions for the reactions 40Ar+144Sm→184Hg and 40Ar+166Er→206Rn were measured at the energies below and above the Coulomb barrier (Elab=142-207 MeV) using a mass-separator MASHA. The experimental data were compared with theoretical calculations using a Channel Coupling Model. The influence of experimental beam energy spread on the excitation functions was taking into account. It was found that structure of xn-cross sections correlate strongly with the nuclear structure of colliding nuclei.

Mesozoic thermal history and timing of structural events for the Yukon-Tanana Upland, east-central Alaska: 40Ar/39Ar data from metamorphic and plutonic rocks

USGS Publications Warehouse

Dusel-Bacon, C.; Lanphere, M.A.; Sharp, W.D.; Layer, P.W.; Hansen, V.L.

2002-01-01

We present new 40Ar/39Ar ages for hornblende, muscovite, and biotite from metamorphic and plutonic rocks from the Yukon-Tanana Upland, Alaska. Integration of our data with published 40Ar/39Ar, kinematic, and metamorphic pressure (P) and temperature (T) data confirms and refines the complex interaction of metamorphism and tectonism proposed for the region. The oldest metamorphic episode(s) postdates Middle Permian magmatism and predates the intrusion of Late Triassic (215-212 Ma) granitoids into the Fortymile River assemblage (Taylor Mountain assemblage of previous papers). In the eastern Eagle quadrangle, rapid and widespread Early Jurassic cooling is indicated by ???188-186 Ma 40Ar/39Ar plateau ages for hornblende from plutons that intrude the Fortymile River assemblage, and for metamorphic minerals from the Fortymile River assemblage and the structurally underlying Nasina assemblage. We interpret these Early Jurassic ages to represent cooling resulting from northwest-directed contraction that emplaced the Fortymile River assemblage onto the Nasina assemblage to the north as well as the Lake George assemblage to the south. This cooling was the final stage of a continuum of subduction-related contraction that produced crustal thickening, intermediate- to high-P metamorphism within both the Fortymile River assemblage and the structurally underlying Lake George assemblage, and Late Triassic and Early Jurassic plutonism in the Fortymile River and Nasina assemblages. Although a few metamorphic samples from the Lake George assemblage yield Jurassic 40Ar/39Ar cooling ages, most yield Early Cretaceous 40Ar/39Ar ages: hornblende ???135-115 Ma, and muscovite and biotite ???110-108 Ma. We interpret the Early Cretaceous metamorphic cooling, in most areas, to have resulted from regional extension and exhumation of the lower plate, previously tectonically thickened during Early Jurassic and older convergence.

Particle visualization in high-power impulse magnetron sputtering. I. 2D density mapping

DOE Office of Scientific and Technical Information (OSTI.GOV)

Britun, Nikolay, E-mail: nikolay.britun@umons.ac.be; Palmucci, Maria; Konstantinidis, Stephanos

2015-04-28

Time-resolved characterization of an Ar-Ti high-power impulse magnetron sputtering discharge has been performed. This paper deals with two-dimensional density mapping in the discharge volume obtained by laser-induced fluorescence imaging. The time-resolved density evolution of Ti neutrals, singly ionized Ti atoms (Ti{sup +}), and Ar metastable atoms (Ar{sup met}) in the area above the sputtered cathode is mapped for the first time in this type of discharges. The energetic characteristics of the discharge species are additionally studied by Doppler-shift laser-induced fluorescence imaging. The questions related to the propagation of both the neutral and ionized discharge particles, as well as to theirmore » spatial density distributions, are discussed.« less

A 3D-analysis of cluster formation and dynamics of the X(-)-benzene (X = F, Cl, Br, I) ionic dimer solvated by Ar atoms.

PubMed

Albertí, Margarita; Huarte-Larrañaga, Fermín; Aguilar, Antonio; Lucas, José M; Pirani, Fernando

2011-05-14

The specific influence of X(-) ions (X = F,Cl, Br, I) in the solvation process of halide-benzene (X(-)-Bz) ionic heterodimers by Ar atoms is investigated by means of molecular dynamic (MD) simulations. The gradual evolution from cluster rearrangement to solvation dynamics is discussed by considering ensembles of n (n = 1-15 and n = 30) Ar atoms around the X(-)-Bz stable ionic dimers. The potential energy surfaces employed are based on an atom/ion-atom and atom/ion-bond decomposition, which has been developed previously by some of the authors. The outcome of the dynamics is analyzed by employing radial distribution functions (RDF) and tridimensional (3D) probability densities.

Macromolecular recognition: Structural aspects of the origin of the genetic system

NASA Technical Reports Server (NTRS)

Rein, Robert; Sokalski, W. Andrzej; Barak, Dov; Luo, Ning; Zielinski, Theresa Julia; Shibata, Masayuki

1991-01-01

Theoretical simulation of prebiotic chemical processes is an invaluable tool for probing the phenomenon of the evolution of life. Using computational and modeling techniques and guided by analogies from present day systems, we seek to understand the emergence of the genetic apparatus, enzymatic catalysis and protein synthesis under prebiotic conditions. Modeling of the ancestral aminoacyl-tRNA-synthetases (aRS) may provide important clues to the emergence of the genetic code and the protein synthetic machinery. The minimal structural requirements for the catalysis of tRNA aminoacylation are being explored. A formation of an aminoacyl adenylate was studied in the framework of ab initio molecular orbital theory. The role of individual residues in the vicinity of the TyrRS active site was examined, and the effect of all possible amino acids substitutions near the active site was examined. A formation of aminoacyl tRNA was studied by the molecular modeling system SYBYL with the high resolution crystallographic structures of the present day tRNA, aRS's complexes. The ultimate goal is to propose a simple RNA segment that is small enough to be build in the primordial chemical environment but maintains the specificity and catalytic activity of the contemporary RNA enzyme. To understand the mechanism of ribozyme catalyzed reactions, ab initio and semi-empirical (ZINDO) programs were used to investigate the reaction path of transphosphorylation. A special emphasis was placed on the possible catalytic and structural roles played by the coordinated magnesium cation. Both the inline and adjacent mechanisms of transphosphorylation were studied. The structural characteristics of the target helices, particularly a possible role for the G-T pair, is also studied by a molecular dynamics (MD) simulation technique.

Synthesis and reactivity of dimeric Ar'TlTlAr' and trimeric (Ar"T1)3 (Ar', Ar" = bulky terphenyl group) thallium(I) derivatives: Tl(I)-Tl(I) bonding in species ligated by monodentate ligands.

PubMed

Wright, Robert J; Phillips, Andrew D; Hino, Shirley; Power, Philip P

2005-04-06

The synthesis and characterization of three new organothallium(I) compounds are reported. Reaction of (Ar'Li)(2) (Ar' = C(6)H(3)-2,6-(C(6)H(3)-2,6-Pr(i)(2))(2)) and Ar"Li (Ar" = C(6)H(3)-2,6-(C(6)H(3)-2,6-Me(2))(2)) with TlCl in Et(2)O afforded (Ar'Tl)(2) (1) and (Ar' 'Tl)(3) (2). The "dithallene" 1 is the heaviest group 13 dimetallene and features a planar, trans-bent structure with Ar'Tl-Tl = 119.74(14) degrees and Tl-Tl = 3.0936(8) A. Compound 2 is the first structurally characterized neutral, three-membered ring species of formula c-(MR)(3) (M = Al-Tl; R = organo group). The Tl(3) ring has Tl-Tl distances in the range ca. 3.21-3.37 A as well as pyramidal Tl geometries. The Tl-Tl bonds in 1 and 2 are outside the range (2.88-2.97 A) of Tl-Tl single bonds in R(2)TlTlR(2) compounds. The weak Tl-Tl bonding in 1 and 2 leads to their dissociation into Ar'Tl and Ar' 'Tl monomers in hexane. The Ar'Tl monomer behaves as a Lewis base and readily forms a 1:1 donor-acceptor complex with B(C(6)F(5))(3) to give Ar'TlB(C(6)F(5))(3), 3. Adduct 3 features an almost linear thallium C(ipso)-Tl-B angle of 174.358(7) degrees and a Tl-B distance of 2.311(2) A, which indicates strong association. Treatment of 1 with a variety of reagents resulted in no reactions. The lower reactivity of 1 is in accord with the reluctance of Tl(I) to undergo oxidation to Tl(III) due to the unreactive character of the 6s(2) electrons.

Post-rift magmatic evolution of the eastern North American “passive-aggressive” margin

USGS Publications Warehouse

Mazza, Sarah E.; Gazel, Esteban; Johnson, Elizabeth A.; Bizmis, Michael; McAleer, Ryan J.; Biryol, C. Berk

2017-01-01

Understanding the evolution of passive margins requires knowledge of temporal and chemical constraints on magmatism following the transition from supercontinent to rifting, to post-rifting evolution. The Eastern North American Margin (ENAM) is an ideal study location as several magmatic pulses occurred in the 200 My following rifting. In particular, the Virginia-West Virginia region of the ENAM has experienced two postrift magmatic pulses at ∼152 Ma and 47 Ma, and thus provides a unique opportunity to study the long-term magmatic evolution of passive margins. Here we present a comprehensive set of geochemical data that includes new 40Ar/39Ar ages, major and trace-element compositions, and analysis of radiogenic isotopes to further constrain their magmatic history. The Late Jurassic volcanics are bimodal, from basanites to phonolites, while the Eocene volcanics range from picrobasalt to rhyolite. Modeling suggests that the felsic volcanics from both the Late Jurassic and Eocene events are consistent with fractional crystallization. Sr-Nd-Pb systematics for the Late Jurassic event suggests HIMU and EMII components in the magma source that we interpret as upper mantle components rather than crustal interaction. Lithospheric delamination is the best hypothesis for magmatism in Virginia/West Virginia, due to tectonic instabilities that are remnant from the long-term evolution of this margin, resulting in a “passive-aggressive” margin that records multiple magmatic events long after rifting ended.

Characteristics of temporal evolution of particle density and electron temperature in helicon discharge

NASA Astrophysics Data System (ADS)

Yang, Xiong; Cheng, Mousen; Guo, Dawei; Wang, Moge; Li, Xiaokang

2017-10-01

On the basis of considering electrochemical reactions and collision relations in detail, a direct numerical simulation model of a helicon plasma discharge with three-dimensional two-fluid equations was employed to study the characteristics of the temporal evolution of particle density and electron temperature. With the assumption of weak ionization, the Maxwell equations coupled with the plasma parameters were directly solved in the whole computational domain. All of the partial differential equations were solved by the finite element solver in COMSOL MultiphysicsTM with a fully coupled method. In this work, the numerical cases were calculated with an Ar working medium and a Shoji-type antenna. The numerical results indicate that there exist two distinct modes of temporal evolution of the electron and ground atom density, which can be explained by the ion pumping effect. The evolution of the electron temperature is controlled by two schemes: electromagnetic wave heating and particle collision cooling. The high RF power results in a high peak electron temperature while the high gas pressure leads to a low steady temperature. In addition, an OES experiment using nine Ar I lines was conducted using a modified CR model to verify the validity of the results by simulation, showing that the trends of temporal evolution of electron density and temperature are well consistent with the numerically simulated ones.

Volcano-stratigraphy and 40Ar/ 39Ar geochronology of the Macusani ignimbrite field: monitor of the Miocene geodynamic evolution of the Andes of southeast Peru

NASA Astrophysics Data System (ADS)

Cheilletz, Alain; Clark, Alan H.; Farrar, Edward; Pauca, Guido Arroyo; Pichavant, Michel; Sandeman, Hamish A.

1992-04-01

A total of 1400 m of ignimbritic ash-flow tuffs distributed in five cross-sections and extending from the pre-Neogene base to the uppermost flows were studied in the Miocene Macusani ignimbrite basin (southeast Peru). Volcano-stratigraphic interpolation and precise 40Ar/ 39Ar dating of sanidine, biotite, and rhyolitic glass from the ash-flow tuffs give rise to a southwest-northeast correlation chart subdivided into six volcanic cycles or fundamental cooling units i.e., (1) 10.0 ± 0.5; (2) 7.8-8.0 ± 0.1; (3) 7.5 ± 0.1; (4) 7.3 ± 0.1; (5) 6.8-7.0 ± O.1; and (6) 6.7 ± O.1 Ma. These delimit two brief e 10 ± 1 and 7 ± 1 Ma, which are sensibly synchronous with the Quechua 2 and Quechua 3 compressional events characterizing the tectonic regime in the Central Andes. This close relationship between tectonic pulses and felsic magmatic activity adds a supplementary constraint to models of the Miocene tectono-magmatic evolution of the Cordillera Oriental. The stratigraphic relationships of the uranium mineralization of the Macusani field are defined for the first time: the stratiform-stratabound occurrences are restricted to three main cooling units dated at 7.8, 7.5 and 6.9-6.8 Ma which constitute a maximum age for uranium deposition.

TBECH, 1,2-dibromo-4-(1,2 dibromoethyl) cyclohexane, alters androgen receptor regulation in response to mutations associated with prostate cancer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kharlyngdoh, Joubert Banjop; Asnake, Solomon; Prad

Point mutations in the AR ligand-binding domain (LBD) can result in altered AR structures leading to changes of ligand specificity and functions. AR mutations associated to prostate cancer (PCa) have been shown to result in receptor activation by non-androgenic substances and anti-androgenic drugs. Two AR mutations known to alter the function of anti-androgens are the AR{sub T877A} mutation, which is frequently detected mutation in PCa tumors and the AR{sub W741C} that is rare and has been derived in vitro following exposure of cells to the anti-androgen bicalutamide. AR activation by non-androgenic environmental substances has been suggested to affect PCa progression.more » In the present study we investigated the effect of AR mutations (AR{sub W741C} and AR{sub T877A}) on the transcriptional activation following exposure of cells to an androgenic brominated flame retardant, 1,2-dibromo-4-(1,2 dibromoethyl) cyclohexane (TBECH, also named DBE-DBCH). The AR mutations resulted in higher interaction energies and increased transcriptional activation in response to TBECH diastereomer exposures. The AR{sub T877A} mutation rendered AR highly responsive to low levels of DHT and TBECH and led to increased AR nuclear translocation. Gene expression analysis showed a stronger induction of AR target genes in LNCaP cells (AR{sub T877A}) compared to T-47D cells (AR{sub WT}) following TBECH exposure. Furthermore, AR knockdown experiments confirmed the AR dependency of these responses. The higher sensitivity of AR{sub T877A} and AR{sub W741C} to low levels of TBECH suggests that cells with these AR mutations are more susceptible to androgenic endocrine disrupters. - Highlights: • TBECH, is an endocrine disrupting compound that differ in activity depending on AR structure and sequence. • TBECH interaction with the human AR-LBD containing the mutations W741C and T877A is increased compared to the wild type receptor • The mutations, W741C and T877A, are more potent than the wild type receptor at inducing AR nuclear translocation and transcriptional activation following TBECH exposure. • TBECH mediates action on androgen response genes via AR signaling.« less

Cyclic evolution of the electron temperature and density in dusty low-pressure radio frequency plasmas with pulsed injection of hexamethyldisiloxane

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garofano, V.; Stafford, L., E-mail: luc.stafford@umontreal.ca, E-mail: kremena.makasheva@laplace.univ-tlse.fr; Despax, B.

2015-11-02

Optical emission spectroscopy was used to analyze the very-low-frequency cyclic evolution of the electron energy and density caused by repetitive formation and loss of dust nanoparticles in argon plasmas with pulsed injection of hexamethyldisiloxane (HMDSO, [CH{sub 3}]{sub 6}Si{sub 2}O). After elaborating a Boltzmann diagram for Ar high-lying levels and a collisional-radiative model for Ar 2p (Paschen notation) states, temperatures characterizing the low- and high-energy parts of the electron population were calculated. Relative electron densities were also estimated from relative line emission intensities. Both temperatures increase when the dust occupation increases, and then decrease when dust is lost. The opposite trendmore » was observed for the electron density. Such cyclic behaviors of the electron energy and electron density in the HMDSO-containing plasmas are in good agreement with the evolution processes in dusty plasmas, in which the formation of negative ions followed by an electron attachment on the surfaces of the nanoparticles is a critical phenomenon driving dust growth.« less

40Ar/36Ar geochronology on a quadrupole mass spectrometer: Where are we going?

NASA Astrophysics Data System (ADS)

Schneider, B.; Wijbrans, J. R.; Kuiper, K. F.; Fenton, C. R.; Williams, A. J.

2009-04-01

40Ar/39Ar analysis has passed many milestones since its first application (Wänke & König, 1959). From the early all-glass Reynolds-type vacuum system to today's high quality, bakeable all-metal piping and valve systems, the evolution of ultra high vacuum systems has been considerable. Extraction systems have faced similar changes over time. Early furnaces made partially of glass were later replaced by full metal constructs containing a high temperature resistant molybdenum alloy tube and heating mechanism, sometimes contained within an insulating secondary vacuum chamber. Laser extraction techniques further refined the approach allowing very small samples or sample parts to be analyzed. The principal type of mass spectrometer used for 40Ar/36Ar geochronology is the magnetic sector instrument, which has the resolution and sensitivity necessary for measuring argon isotopes and achieving high precision over a large age range. We present 40Ar/39Ar data from basalt samples collected from a number of different locations, all obtained using the Hiden HAL Series 1000 quadrupole mass spectrometer at Vrije University, Amsterdam. We show that quadrupole technology is not only a viable option in K-Ar geochronology (Rouchon et al., 2008) but also in 40Ar/39Ar geochronology. The data was obtained from groundmass hand-picked from 200-500 um size fractions. Sample amounts of 200 to 500 mg were used for incremental heating experiments. The quality of the data is demonstrated by convergence of plateau and isochron ages, replicate analyses and by comparison to results of independent studies. Sample ages range from 40 ka to 400 ka, demonstrating the potential of quadrupole instruments for dating even very young rocks using the 40Ar/39Ar incremental heating technique. Rouchon, V., Lefevre, J.-C., Quidelleur, X., Guerin, G., Gillot, P.-Y. (2008): Nonspiked 40Ar and 36Ar quantification using a quadrupole mass spectrometer: A potential for K-Ar geochronology. International Journal of Mass Spectrometry 270, 52-61. Wänke H., König H. (1959): Eine neue Methode zur Kalium-Argon-Altersbestimmung und ihre Anwendung auf Steinmeteorite. Z. Naturforschung, 14a, 860 - 866.

The Tectonic-Magmatic Evolution of Galápagos Lineaments from Radiometric Dating and Bathymetry Along the Pinta-Marchena Ridge

NASA Astrophysics Data System (ADS)

Sinton, C.; Mittelstaedt, E. L.; Harpp, K. S.; Fornari, D. J.; Geist, D.; Soule, S. A.

2016-12-01

The Northern Galápagos Volcanic Province (NGVP), located north of the Galápagos Archipelago and centered across the 90° 50'W Galápagos transform fault (GTF) of the Galápagos Spreading Center (GSC), consists of a complex set of islands, seamount chains and ridges. The region is particularly important to deciphering the evolution of the Galápagos region as magmatism in this region is thought to be the result of interactions between the Galápagos mantle plume, the overlying lithosphere, and the GSC. To investigate the evolution of these interactions, we present seafloor images, bathymetry, and 40Ar-39Ar age data from a volcanic ridge that includes the islands of Pinta and Marchena. The most striking feature of this region is a flat-topped seamount, Banco Tuzo, with a shallow summit region reaching to 360-400 meters below sea level. Recovered basalt fragments from Banco Tuzo include sub-rounded rocks with morphologies that suggest exposure to a tidal environment. Ages of the lavas determined by 40Ar-39Ar dating vary from 2.0 Ma to 1.1 Ma (with 2σ error of ± 0.5 Ma). The subsidence rate calculated by the radiometric ages is similar to that estimated for young oceanic lithosphere. Our observations indicate that Banco Tuzo is an ancient, now submerged island. Other lavas recovered from the submarine flanks of Pinta and Marchena range in age from 1.4 to 0.6 Ma. These ages generally coincide with the westward propagation of the eastern GSC and the southward elongation of the GTF after a recent ridge jump ( 1 Ma), suggesting that magmatism along this ridge is related to the changing relative location of GSC and the upwelling Galapagos mantle plume.

A New Tephrochronology for Early Diverse Stone Tool Technologies and Long-Distance Raw Material Transport in the Middle-Late Pleistocene Kapthurin Formation, East Africa.

NASA Astrophysics Data System (ADS)

Blegen, N.; Jicha, B.

2017-12-01

The Middle to Late Pleistocene (780-10 ka) of East Africa records significant behavioral change, the earliest fossils of Homo sapiens and the dispersals of our species across and out of Africa. Studying human evolution in the Middle to Late Pleistocene thus requires an extensive and precise chronology relating the appearances of various behaviors preserved in archaeological sequences to aspects of hominin biology and evidence of past environments preserved in the fossils and geological sequences. Tephrochronology provides the chronostratigraphic resolution to achieve this through correlation and dating of volcanic ashes. The tephrochronology of the Kapthurin Formation presented here, based on tephra correlations and 40Ar/ 39Ar dates, provides new ages between 396.3 ± 3.4 ka and 465.3 ± 1.0 ka for nine sites showing some of the earliest evidence of diverse blade and Levallois methods of core reduction. These are >110 kyr older than previously known in East Africa. New 40Ar/ 39Ar dates provide a refined age of 222.5 ± 0.6 ka for early evidence of long-distance obsidian transport at the Sibilo School Road Site. Long-distance tephra correlation between the Baringo and Lake Victoria basins also provides a new date of 100 ka for the Middle Stone Age site of Keraswanin. By providing new or older dates for 11 sites containing several important aspects of hominin behavior and extending the chronology of the Kapthurin Formation forward by 130,000 years, the tephrochronology presented here contributes one of the longest and most refined chronostratigraphic frameworks relevant to modern human evolution. In conjunction with recent archaeological and paleoenvironmental data, this tephrochronology provides the foundation to understand the process of modern human behavioral evolution through the East African Middle and Late Pleistocene as it relates to biological and paleoenvironmental circumstances.

Early evolution of Martian volatiles: Nitrogen and noble gas components in ALH84001 and Chassigny

NASA Astrophysics Data System (ADS)

Mathew, K. J.; Marti, K.

2001-01-01

Studies on SNC meteorites have permitted the characterization of modern Martian atmospheric components as well as indigenous Martian nitrogen and solar-type xenon. New isotopic and elemental abundances of noble gases and nitrogen in ALH84001 and Chassigny provide important constraints on the early evolution of the planet. A primitive solar Xe component (Chass-S) and an evolved Xe component (Chass-E), augmented with fission Xe are identified in Chassigny. Both components represent interior reservoirs of Mars and are characterized by low 129Xe/132Xe (<1.07) and by distinct elemental ratios 36Ar/132Xe<5 and >130, respectively. Light nitrogen (δ15N=-30‰) is associated with the Chass-S component and is enriched in melt inclusions in olivine. An ancient (presumably incorporated ~4 Gyr ago) evolved Martian atmospheric component is identified in ALH84001 and has the following signatures: 129Xe/132Xe=2.16, 36Ar/38Ar>=5.0, 36Ar/132Xe=~50, 84Kr/132Xe=~6, and δ15N=7‰. The trapped Xe component in ALH84001 is not isotopically fractionated. We observe major shifts in nitrogen signatures due to cosmogenic N component in both Chassigny and ALH84001. A heavy nitrogen component of comparable magnitude (δ15N>150‰) has previously been interpreted as (heavy) Martian atmospheric N. In situ produced fission Xe components, due to 244Pu in ALH84001 and due to 238U in Chassigny, are identified. The ALH84001 data strongly constrain exchanges of Martian atmospheric and interior reservoirs. Mars retained abundant fission Xe components, and this may account for the low observed fission Xe component in the modern Martian atmosphere. Chronometric information regarding the evolution of the early Martian atmosphere can be secured from the relative abundances of radiogenic and fission Xe, as ~80% of the Martian 129Xer is observed in the atmospheric 129Xe/132Xe ratio ~ 4 Gyr ago.

Cassette structures associated with antibiotic resistance genes in Salmonella enterica isolated from processing plants, food animals, and retail meats

USDA-ARS?s Scientific Manuscript database

Slowing the spread of antibiotic resistance (AR) is one of the most urgent tasks currently facing the field of microbiology. Mobile genetic elements, like plasmids and integrons, allow AR genes to transfer horizontally, thus increasing the spread of AR genes. Determining which AR genes are found on ...

Stratigraphy and structural development of the southwest Isla Tiburón marine basin: Implications for latest Miocene tectonic opening and flooding of the northern Gulf of California

USGS Publications Warehouse

Bennett, Scott E. K.; Oskin, Michael; Dorsey, Rebecca; Iriondo, Alexander; Kunk, Michael J.

2015-01-01

Accurate information on the timing of earliest marine incursion into the Gulf of California (northwestern México) is critical for paleogeographic models and for understanding the spatial and temporal evolution of strain accommodation across the obliquely divergent Pacific-North America plate boundary. Marine strata exposed on southwest Isla Tiburón (SWIT) have been cited as evidence for a middle Miocene marine incursion into the Gulf of California at least 7 m.y. prior to plate boundary localization ca. 6 Ma. A middle Miocene interpretation for SWIT marine deposits has played a large role in subsequent interpretations of regional tectonics and rift evolution, the ages of marine basins containing similar fossil assemblages along ~1300 km of the plate boundary, and the timing of marine incursion into the Gulf of California. We report new detailed geologic mapping and geochronologic data from the SWIT basin, an elongate sedimentary basin associated with deformation along the dextral-oblique La Cruz fault. We integrate these results with previously published biostratigraphic and geochronologic data to bracket the age of marine deposits in the SWIT basin and show that they have a total maximum thickness of ~300 m. The 6.44 ± 0.05 Ma (Ar/Ar) tuff of Hast Pitzcal is an ash-flow tuff stratigraphically below the oldest marine strata, and the 6.01 ± 0.20 Ma (U/Pb) tuff of Oyster Amphitheater, also an ash-flow tuff, is interbedded with marine conglomerate near the base of the marine section. A dike-fed rhyodacite lava flow that caps all marine strata yields ages of 3.51 ± 0.05 Ma (Ar/Ar) and 4.13 ± 0.09 Ma (U/Pb) from the base of the flow, consistent with previously reported ages of 4.16 ± 1.81 Ma (K-Ar) from the flow top and (K-Ar) 3.7 ± 0.9 Ma from the feeder dike. Our new results confirm a latest Miocene to early Pliocene age for the SWIT marine basin, consistent with previously documented latest Miocene to early Pliocene (ca. 6.2-4.3 Ma) planktonic and benthic foraminifera from this section. Results from biostratigraphy and geochronology thus constrain earliest marine deposition on SWIT to ca. 6.2 ± 0.2 Ma, coincident with a regional-scale latest Miocene marine incursion into the northern proto-Gulf of California. This regional marine incursion flooded the northernmost, >500-km-long portion of the Gulf of California shear zone, a narrow belt of localized strike-slip faulting, clockwise block rotation, and subsiding pull-apart basins. Oblique Pacific-North America relative plate motion gradually localized in the >1000-km-long Gulf of California shear zone ca. 9-6 Ma, subsequently permitting the punctuated south to north flooding of the incipient Gulf of California seaway.

Neogene geomorphic and climatic evolution of the central San Juan Mountains, Colorado: K/Ar age and stable isotope data on supergene alunite and jarosite from the Creede mining district

USGS Publications Warehouse

Rye, Robert O.; Bethke, Philip M.; Lanphere, Marvin A.; Steven, Thomas A.

2000-01-01

K/Ar age determinations or supergene alunite and jarosite, formed during Neogene weathering of the epithermal silver and base-metal ores of the Creede mining district, have been combined with geologic evidence to estimate the timing of regional uplift of the southern Rocky Mountains and related canyon cutting. In addition, oxygen and hydrogen isotopic studies suggest climate changes in the central San Juan Mountains during the past 5 m.y. Alunite [ideally (K,Na)Al3(SO4)2(OH)6] and jarosite [ideally KFe3(SO4)2(OH)6] can be dated by K/Ar or 40Ar/39Ar techniques and both contain OH and SO4 sites that enable four stable isotope analyses (δD, δ18OOH, and δ34S) to be made. This supergene alunite and jarosite formed by weathering of sulfide-rich ore bodies may record the evolution of the chemical and hydrologic processes affecting ancient oxidized acid ground water, as well as details of climate history and geomorphic evolution. Fine-grained (1-10 μm) supergene alunite and jarosite occur in minor fractures in the upper, oxidized parts of the 25 Ma sulfide-bearing veins of the Creede mining district, and jarosite also occurs in adjacent oxidized Ag-bearing clastic sediments. K/Ar ages for alunite range from 4.8 to 3.1 Ma, and for jarosite range from 2.6 to 0.9 Ma. The δD values for alunite and jarosite show opposite correlations with elevation, and values for jarosite correlate with age. Calculated δDH2O values of alunite fluids approach but are larger than those of present-day meteoric water. Calculated δDH2O values for jarosite fluids are more variable; the values of the youngest jarosites are lowest and are similar to those of present-day meteoric water in the district. The narrow δD-δ18OSO4 values of alunites reflects oxidation of sulfide below the water table. The greater range in these values for jarosites reflects oxidation of sulfide under vadose conditions. The ages of alunite mark the position of the paleo-water table at the end of a period of moderate erosion from ca. 25 to 5 Ma that exposed the tops of the ore bodies to oxidation. The younger jarosite formed in the vadose zone during or following subsequent canyon cutting related to regional uplift of the southern Rocky Mountains, The δD values suggest that climates in the area were similar to those of the present day prior to regional uplift but went through a warm period before returning to present conditions during or after regional uplift. The results of this study indicate that the combined stable and radiogenic isotope analysis of supergene alunite and jarosite has broad application in understanding climate and geomorphic evolution of selected areas.

40Ar/39Ar geochronology of submarine Mauna Loa volcano, Hawaii

NASA Astrophysics Data System (ADS)

Jicha, B.; Rhodes, J. M.; Singer, B. S.; Vollinger, M. J.; Garcia, M. O.

2009-12-01

A major impediment to our understanding of the nature and structure of the Hawaiian plume, and evaluating the competing plume models has been a lack of thick stratigraphic sections from which to obtain long temporal records of magmatic history. The Hawaii Scientific Drilling Project (HSDP) made a significant advance towards solving this problem by documenting the long-term magmatic evolution of Mauna Kea volcano on the Kea side of the plume. To evaluate comparable long-term magmatic history on the Loa side of the plume we collected a stratigraphically controlled sample suite using Jason and Pisces dives from three vertical transects of the 1.6 km high Kae Lae landslide scarp cut into Mauna Loa’s submarine southwest rift zone (SWR). We have undertaken an 40Ar/39Ar investigation of Mauna Loa’s growth history to integrate new geochronologic constraints with geochemical, and isotopic data, illuminating temporal trends within the Hawaiian plume. Obtaining precise 40Ar/39Ar ages from tholeiitic lavas younger than 500 ka containing only 0.2-0.6 wt.% K2O is challenging due to the extremely low radiogenic 40Ar contents. Furnace incremental heating experiments of groundmass separated from 15 submarine lavas have yielded four new age determinations (a 27% success rate). These four lavas give concordant age spectra with plateau and isochron ages that agree with stratigraphy. We also analyzed two previously-dated subaerial Mauna Kea tholeiites from the HSDP-2 drill core, to assess inter-laboratory reproducibility and calibrate our results to those obtained for the core. Two experiments on sample SR413-4.0 and one experiment from SR781-21.2 gave weighted mean plateau ages of 364 ± 95 ka and 473 ± 109, respectively, which are indistinguishable from the published 40Ar/39Ar ages of 390 ± 70 ka and 482 ± 67. Although Sharp and Renne (2005) preferred isochron ages for the submarine Mauna Kea tholeiites recovered from HSDP, we find that submarine Mauna Loa lavas contain trapped argon with a 40Ar/36Ar ratio that is indistinguishable from the atmospheric value of 295.5. Therefore, we consider the plateau ages to provide the most precise estimate of time elapsed since eruption. Lavas from 857, 1753, and 2112 mbsl give indistinguishable plateau ages of 473 ± 29, 463 ± 33, and 472 ± 107, respectively, implying an extraordinary period of lava accumulation. If correct, this implies that ~1300 m of lava was emplaced on the SWR at a rate far exceeding that proposed in previous accumulation models for Mauna Loa or Mauna Kea, possibly correlating with the peak of the shield-building stage. Three experiments from a more K-rich lava (0.67 wt. % K2O) near the top of the landslide scarp gave a weighted mean plateau age of 193 ± 16 ka, indicating a marked decline in eruption rates on this part of the SWR.

Human adenosine A2A receptor binds calmodulin with high affinity in a calcium-dependent manner.

PubMed

Piirainen, Henni; Hellman, Maarit; Tossavainen, Helena; Permi, Perttu; Kursula, Petri; Jaakola, Veli-Pekka

2015-02-17

Understanding how ligands bind to G-protein-coupled receptors and how binding changes receptor structure to affect signaling is critical for developing a complete picture of the signal transduction process. The adenosine A2A receptor (A2AR) is a particularly interesting example, as it has an exceptionally long intracellular carboxyl terminus, which is predicted to be mainly disordered. Experimental data on the structure of the A2AR C-terminus is lacking, because published structures of A2AR do not include the C-terminus. Calmodulin has been reported to bind to the A2AR C-terminus, with a possible binding site on helix 8, next to the membrane. The biological meaning of the interaction as well as its calcium dependence, thermodynamic parameters, and organization of the proteins in the complex are unclear. Here, we characterized the structure of the A2AR C-terminus and the A2AR C-terminus-calmodulin complex using different biophysical methods, including native gel and analytical gel filtration, isothermal titration calorimetry, NMR spectroscopy, and small-angle X-ray scattering. We found that the C-terminus is disordered and flexible, and it binds with high affinity (Kd = 98 nM) to calmodulin without major conformational changes in the domain. Calmodulin binds to helix 8 of the A2AR in a calcium-dependent manner that can displace binding of A2AR to lipid vesicles. We also predicted and classified putative calmodulin-binding sites in a larger group of G-protein-coupled receptors. Copyright © 2015 Biophysical Society. Published by Elsevier Inc. All rights reserved.

The β3 Adrenergic Receptor Agonist BRL37344 Exacerbates Atrial Structural Remodeling Through iNOS Uncoupling in Canine Models of Atrial Fibrillation.

PubMed

Wang, Xiaobing; Wang, Ruifeng; Liu, Guangzhong; Dong, Jingmei; Zhao, Guanqi; Tian, Jingpu; Sun, Jiayu; Jia, Xiuyue; Wei, Lin; Wang, Yuping; Li, Weimin

2016-01-01

The role of the β3-adrenergic receptor (β3-AR) agonist BRL37344 in atrial fibrillation (AF) structural remodeling and the underlying mechanisms as a therapeutic target were investigated. Four groups of dogs were evaluated: sham, pacing, β3-AR agonist BRL37344 (β3-AGO), and β3-AR antagonist L748337 (β3-ANT) groups. Dogs in the pacing, β3-AGO and β3-ANT groups were subjected to rapid atrial pacing for four weeks. Atrial structure and function, AF inducibility and duration, atrial myocyte apoptosis and interstitial fibrosis were assessed. Atrial superoxide anions were evaluated by fluorescence microscopy and colorimetric assays. Cardiac nitrate+nitrite levels were used to assess nitric oxide (NO) production. Protein and mRNA expression of β3-AR, neuronal NO synthase (nNOS), inducible NO synthase (iNOS), endothelial NO synthase (eNOS) and guanosine triphosphate cyclohydrolase-1 (GCH-1) as well as tetrahydrobiopterin (BH4) levels were measured. β3-AR was up-regulated in AF. Stimulation of β3-AR significantly increased atrial myocyte apoptosis, fibrosis and atrial dilatation, resulting in increased AF induction and prolonged duration. These effects were attenuated by β3-ANT. Moreover, β3-AGO reduced BH4 and NO production and increased superoxide production, which was inhibited by the specific iNOS inhibitor, 1400w β3-AGO also increased iNOS but decreased eNOS and had no effect on nNOS expression in AF. β3-AR stimulation resulted in atrial structural remodeling by increasing iNOS uncoupling and related oxidative stress. β3-AR up-regulation and iNOS uncoupling might be underlying AF therapeutic targets. © 2016 The Author(s) Published by S. Karger AG, Basel.

Characterization of a C3a receptor in rainbow trout and Xenopus: the first identification of C3a receptors in nonmammalian species

USGS Publications Warehouse

Boshra, Hani; Wang, Tiehui; Hove-Madsen, Leif; Hansen, John D.; Li, Jun; Matlapudi, Anjun; Secombes, Christopher J.; Tort, Lluis; Sunyer, J. Oriol

2005-01-01

Virtually nothing is known about the structure, function, and evolutionary origins of the C3aR in nonmammalian species. Because C3aR and C5aR are thought to have arisen from the same common ancestor, the recent characterization of a C5aR in teleost fish implied the presence of a C3aR in this animal group. In this study we report the cloning of a trout cDNA encoding a 364-aa molecule (TC3aR) that shows a high degree of sequence homology and a strong phylogenetic relationship with mammalian C3aRs. Northern blotting demonstrated that TC3aR was expressed primarily in blood leukocytes. Flow cytometric analysis and immunofluorescence microscopy showed that Abs raised against TC3aR stained to a high degree all blood B lymphocytes and, to a lesser extent, all granulocytes. More importantly, these Abs inhibited trout C3a-mediated intracellular calcium mobilization in trout leukocytes. A fascinating structural feature of TC3aR is the lack of a significant portion of the second extracellular loop (ECL2). In all C3aR molecules characterized to date, the ECL2 is exceptionally large when compared with the same region of C5aR. However, the exact function of the extra portion of ECL2 is unknown. The lack of this segment in TC3aR suggests that the extra piece of ECL2 was not necessary for the interaction of the ancestral C3aR with its ligand. Our findings represent the first C3aR characterized in nonmammalian species and support the hypothesis that if C3aR and C5aR diverged from a common ancestor, this event occurred before the emergence of teleost fish.

Membrane Driven Spatial Organization of GPCRs

NASA Astrophysics Data System (ADS)

Mondal, Sayan; Johnston, Jennifer M.; Wang, Hao; Khelashvili, George; Filizola, Marta; Weinstein, Harel

2013-10-01

Spatial organization of G-protein coupled receptors (GPCRs) into dimers and higher order oligomers has been demonstrated in vitro and in vivo. The pharmacological readout was shown to depend on the specific interfaces, but why particular regions of the GPCR structure are involved, and how ligand-determined states change them remains unknown. Here we show why protein-membrane hydrophobic matching is attained upon oligomerization at specific interfaces from an analysis of coarse-grained molecular dynamics simulations of the spontaneous diffusion-interaction of the prototypical beta2-adrenergic (β2AR) receptors in a POPC lipid bilayer. The energy penalty from mismatch is significantly reduced in the spontaneously emerging oligomeric arrays, making the spatial organization of the GPCRs dependent on the pattern of mismatch in the monomer. This mismatch pattern is very different for β2AR compared to the highly homologous and structurally similar β1AR, consonant with experimentally observed oligomerization patterns of β2AR and β1AR. The results provide a mechanistic understanding of the structural context of oligomerization.

A STATISTICAL STUDY OF FLARE PRODUCTIVITY ASSOCIATED WITH SUNSPOT PROPERTIES IN DIFFERENT MAGNETIC TYPES OF ACTIVE REGIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Ya-Hui; Hsieh, Min-Shiu; Yu, Hsiu-Shan

It is often believed that intense flares preferentially originate from the large-size active regions (ARs) with strong magnetic fields and complex magnetic configurations. This work investigates the dependence of flare activity on the AR properties and clarifies the influence of AR magnetic parameters on the flare productivity, based on two data sets of daily sunspot and flare information as well as the GOES soft X-ray measurements and HMI vector magnetograms. By considering the evolution of magnetic complexity, we find that flare behaviors are quite different in the short- and long-lived complex ARs and the ARs with more complex magnetic configurationsmore » are likely to host more impulsive and intense flares. Furthermore, we investigate several magnetic quantities and perform the two-sample Kolmogorov–Smirnov test to examine the similarity/difference between two populations in different types of ARs. Our results demonstrate that the total source field strength on the photosphere has a good correlation with the flare activity in complex ARs. It is noted that intense flares tend to occur at the regions of strong source field in combination with an intermediate field-weighted shear angle. This result implies that the magnetic free energy provided by a complex AR could be high enough to trigger a flare eruption even with a moderate magnetic shear on the photosphere. We thus suggest that the magnetic free energy represented by the source field rather than the photospheric magnetic complexity is a better quantity to characterize the flare productivity of an AR, especially for the occurrence of intense flares.« less

Non-coding RNAs' partitioning in the evolution of photosynthetic organisms via energy transduction and redox signaling.

PubMed

Kotakis, Christos

2015-01-01

Ars longa, vita brevis -Hippocrates Chloroplasts and mitochondria are genetically semi-autonomous organelles inside the plant cell. These constructions formed after endosymbiosis and keep evolving throughout the history of life. Experimental evidence is provided for active non-coding RNAs (ncRNAs) in these prokaryote-like structures, and a possible functional imprinting on cellular electrophysiology by those RNA entities is described. Furthermore, updated knowledge on RNA metabolism of organellar genomes uncovers novel inter-communication bridges with the nucleus. This class of RNA molecules is considered as a unique ontogeny which transforms their biological role as a genetic rheostat into a synchronous biochemical one that can affect the energetic charge and redox homeostasis inside cells. A hypothesis is proposed where such modulation by non-coding RNAs is integrated with genetic signals regulating gene transfer. The implications of this working hypothesis are discussed, with particular reference to ncRNAs involvement in the organellar and nuclear genomes evolution since their integrity is functionally coupled with redox signals in photosynthetic organisms.

Diffusive loss of argon in response to melt vein formation in polygenetic impact melt breccias

NASA Astrophysics Data System (ADS)

Mercer, Cameron M.; Hodges, Kip V.

2017-08-01

Many planetary surfaces in the solar system have experienced prolonged bombardment. With each impact, new rocks can be assembled that incorporate freshly generated impact melts with fragments of older rocks. Some breccias can become polygenetic, containing multiple generations of impact melt products, and can potentially provide important insights into the extensive bombardment history of a region. However, the amount of chronological information that can be extracted from such samples depends on how well the mineral isotopic systems of geochronometers can preserve the ages of individual melt generations without being disturbed by younger events. We model the thermal evolution of impact melt veins and the resulting loss of Ar from K-bearing phases common in impact melt breccias to assess the potential for preserving the 40Ar/39Ar ages of individual melt generations. Our model results demonstrate that millimeter-scale, clast-free melt veins cause significant heating of adjacent host rock minerals and can cause detectable Ar loss in contact zones that are generally thinner than, and at most about the same thickness as, the vein width. The incorporation of cold clasts in melt veins reduces the magnitudes of heating and Ar loss in the host rocks, and Ar loss can be virtually undetectable for sufficiently clast-rich veins. Quantitative evidence of the timing of impacts, as measured with the 40Ar/39Ar method, can be preserved in polygenetic impact melt breccias, particularly for those containing millimeter-scale bodies of clast-bearing melt products.

Comprehensive Profiling of the Androgen Receptor in Liquid Biopsies from Castration-resistant Prostate Cancer Reveals Novel Intra-AR Structural Variation and Splice Variant Expression Patterns.

PubMed

De Laere, Bram; van Dam, Pieter-Jan; Whitington, Tom; Mayrhofer, Markus; Diaz, Emanuela Henao; Van den Eynden, Gert; Vandebroek, Jean; Del-Favero, Jurgen; Van Laere, Steven; Dirix, Luc; Grönberg, Henrik; Lindberg, Johan

2017-08-01

Expression of the androgen receptor splice variant 7 (AR-V7) is associated with poor response to second-line endocrine therapy in castration-resistant prostate cancer (CRPC). However, a large fraction of nonresponding patients are AR-V7-negative. To investigate if a comprehensive liquid biopsy-based AR profile may improve patient stratification in the context of second-line endocrine therapy. Peripheral blood was collected from patients with CRPC (n=30) before initiation of a new line of systemic therapy. We performed profiling of circulating tumour DNA via low-pass whole-genome sequencing and targeted sequencing of the entire AR gene, including introns. Targeted RNA sequencing was performed on enriched circulating tumour cell fractions to assess the expression levels of seven AR splice variants (ARVs). Somatic AR variations, including copy-number alterations, structural variations, and point mutations, were combined with ARV expression patterns and correlated to clinicopathologic parameters. Collectively, any AR perturbation, including ARV, was detected in 25/30 patients. Surprisingly, intra-AR structural variation was present in 15/30 patients, of whom 14 expressed ARVs. The majority of ARV-positive patients expressed multiple ARVs, with AR-V3 the most abundantly expressed. The presence of any ARV was associated with progression-free survival after second-line endocrine treatment (hazard ratio 4.53, 95% confidence interval 1.424-14.41; p=0.0105). Six out of 17 poor responders were AR-V7-negative, but four carried other AR perturbations. Comprehensive AR profiling, which is feasible using liquid biopsies, is necessary to increase our understanding of the mechanisms underpinning resistance to endocrine treatment. Alterations in the androgen receptor are associated with endocrine treatment outcomes. This study demonstrates that it is possible to identify different types of alterations via simple blood draws. Follow-up studies are needed to determine the effect of such alterations on hormonal therapy. Copyright © 2017 European Association of Urology. Published by Elsevier B.V. All rights reserved.

Identification of non-classical C-H···M interactions in early and late transition metal complexes containing the CH(ArO)3 ligand.

PubMed

Lein, Matthias; Harrison, John A; Nielson, Alastair J

2013-08-14

The fully optimised DFT structure of the d(0) complex [{CH(ArO)3}Ti(NEt2)] (2) at the B3LYP level compares well with the distorted tetrahedral geometry shown by the X-ray crystal structure. QTAIM analysis of the electron density associated with the C-H···Ti interaction shows a well defined bond critical point, a bond path between the hydrogen and titanium centres and a negative value for the energy density indicative of covalency. A natural bond orbital (NBO) picture of the interaction shows that the C-H σ bond electron density donates to a d hybrid orbital on the metal in a linear fashion. Calculated IR and NMR data for the components of the interaction are consistent with experiment. The computed structures for [{CH(ArO)3}Ti(OPh)] (3), [{CH(ArO)3}Zr(NEt2)] (4), [{CH(ArO)3}Hf(NEt2)] (5), show tetrahedral geometries and QTAIM and NBO properties similar to (2). [{CH(ArO)3}Mo(NEt2)] (6) shows distortion of the tripodal ligand and a reduced C-H···M bond angle with properties more consistent with a C-H···M side-on donor interaction. In [{CH(ArO)3}Fe(NEt2)] (7) the C-H···M bond angle is linear and involves a donor interaction. An energy minimised structure maintaining the three fold coordination to the tripodal ligand was not obtained for [{CH(ArO)3}Ni(NEt2)](2-) but changing from a diethyl amide ligand to phenolato gave energy minimised [{CH(ArO)3}Ni(OPh)](2-) (8). This structure shows a distorted square planar geometry with a substantially bent phenoxo ligand and a near linear C-H···M covalent interaction with donor and back bonding properties. The work shows that linear C-H···M interactions can have both agostic and weak hydrogen bond-like covalency.

Oriental herbs as a source of novel anti-androgen and prostate cancer chemopreventive agents.

PubMed

Lu, Junxuan; Kim, Sung-Hoon; Jiang, Cheng; Lee, HyoJeong; Guo, Junming

2007-09-01

Androgen and androgen receptor (AR) signaling are crucial for the genesis of prostate cancer (PCa), which can often develop into androgen-ligand-independent diseases that are lethal to the patients. Recent studies show that even these hormone-refractory PCa require ligand-independent AR signaling for survival. As current chemotherapy is largely ineffective for PCa and has serious toxic sideeffects, we have initiated a collaborative effort to identify and develop novel, safe and naturally occurring agents that target AR signaling from Oriental medicinal herbs for the chemoprevention and treatment of PCa. We highlight our discovery of decursin from an Oriental formula containing Korean Angelica gigas Nakai (Dang Gui) root as a novel anti-androgen/AR agent. We have identified the following mechanisms to account for the specific anti-AR actions: rapid block of AR nuclear translocation, inhibition of binding of 5alpha-dihydrotestesterone to AR and increased proteasomal degradation of AR protein. Furthermore, decursin lacks the agonist activity of the "pure" anti-androgen bicalutamide and is more potent than bicalutamide in inducing PCa apoptosis. Structure-activity analyses reveal a critical requirement of the side-chain on decursin or its structural isomer decursinol angelate for anti-AR, cell cycle arrest and proapoptotic activities. This work demonstrates the feasibility of using activity-guided fractionation in cell culture assays combined with mechanistic studies to identify novel anti-androgen/ AR agents from complex herbal mixtures.

Pentaarylcyclopentadienyl Iron, Cobalt, and Nickel Halides.

PubMed

Chakraborty, Uttam; Modl, Moritz; Mühldorf, Bernd; Bodensteiner, Michael; Demeshko, Serhiy; van Velzen, Niels J C; Scheer, Manfred; Harder, Sjoerd; Wolf, Robert

2016-03-21

The preparation of new stable half-sandwich transition metal complexes, having a bulky cyclopentadienyl ligand C5(C6H4-4-Et)5 (Cp(Ar1)) or C5(C6H4-4-nBu)5 (Cp(Ar2)), is reported. The tetrahydrofuran (THF) adduct [Cp(Ar1)Fe(μ-Br)(THF)]2 (1a) was synthesized by reacting K[Cp(Ar1)] with [FeBr2(THF)2] in THF, and its molecular structure was determined by X-ray crystallography. Complex 1a easily loses its coordinated THF molecules under vacuum to form the solvent-free complex [Cp(Ar1)Fe(μ-Br)]2 (1b). The analogous complexes [Cp(Ar1)Co(μ-Br)]2 (2), [Cp(Ar1)Ni(μ-Br)]2 (3), and [Cp(Ar2)Ni(μ-Br)]2 (4) were synthesized from CoBr2 and [NiBr2(1,2-dimethoxyethane)]. The mononuclear, low-spin cobalt(III) and nickel(III) complexes [Cp(Ar2)MI2] (5, M = Co; 6, M = Ni) were prepared by reacting the radical Cp(Ar2) with NiI2 and CoI2. The complexes were characterized by NMR and UV-vis spectroscopies and by elemental analyses. Single-crystal X-ray structure analyses revealed that the dimeric complexes 1a, 1b, and 3 have a planar M2Br2 core, whereas 2 and 4 feature a puckered M2Br2 ring.

75 FR 11936 - Unit Structures LLC, Magnolia, AR; Notice of Termination of Investigation

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-12

... DEPARTMENT OF LABOR Employment and Training Administration [TA-W-70,367] Unit Structures LLC, Magnolia, AR; Notice of Termination of Investigation Pursuant to Section 223 of the Trade Act of 1974, as... Arkansas Rapid Response Coordinator on behalf of workers of Unit Structures LLC, Magnolia, Arkansas. The...

Efficiencies of state and velocity-changing collisions of superthermal CN A(2)Pi with He, Ar, N(2) and O(2).

PubMed

Alagappan, Azhagammai; Ballingall, Iain; Costen, Matthew L; McKendrick, Kenneth G; Paterson, Grant

2007-02-14

Polarized laser photolysis of ICN is combined with saturated optical pumping to prepare state-selected CN Alpha(2)Pi (nu' = 4, J = 0.5, F(2), f) with a well-defined anisotropic superthermal speed distribution. The collisional evolution of the prepared state is observed by Doppler-resolved Frequency Modulated (FM) spectroscopy via stimulated emission on the CN Alpha(2)Pi-Chi(2)Sigma(+) (4,2) band. The phenomenological rate constants for removal of the prepared state in collisions with He, Ar, N(2) and O(2) are reported. The observed collision cross-sections are consistent with attractive forces contributing significantly for all the colliders with the exception of He. The collisional evolution of the prepared velocity distribution demonstrates that no significant back-transfer into the prepared level occurs, and that any elastic scattering is strongly in the forward hemisphere.

Promoter-dependent activity on androgen receptor N-terminal domain mutations in androgen insensitivity syndrome.

PubMed

Tadokoro-Cuccaro, Rieko; Davies, John; Mongan, Nigel P; Bunch, Trevor; Brown, Rosalind S; Audi, Laura; Watt, Kate; McEwan, Iain J; Hughes, Ieuan A

2014-01-01

Androgen receptor (AR) mutations are associated with androgen insensitivity syndrome (AIS). Missense mutations identified in the AR-N-terminal domain (AR-NTD) are rare, and clinical phenotypes are typically mild. We investigated 7 missense mutations and 2 insertion/deletions located in the AR-NTD. This study aimed to elucidate the pathogenic role of AR-NTD mutants in AIS and to use this knowledge to further define AR-NTD function. AR-NTD mutations (Q120E, A159T, G216R, N235K, G248V, L272F, and P380R) were introduced into AR-expression plasmids. Stably expressing cell lines were established for del57L and ins58L. Transactivation was measured using luciferase reporter constructs under the control of GRE and Pem promoters. Intrinsic fluorescence spectroscopy and partial proteolysis studies were performed for mutations which showed reduced activities by using a purified AR-AF1 protein. Pem-luciferase reporter activation was reduced for A159T, N235K, and G248V but not the GRE-luciferase reporter. Protein structure analysis detected no significant change in the AR-AF1 region for these mutations. Reduced cellular expression and transactivation activity were observed for ins58L. The mutations Q120E, G216R, L272F, P380R, and del57L showed small or no detectable changes in function. Thus, clinical and experimental analyses have identified novel AR-signalling defects associated with mutations in the structurally disordered AR-NTD domain in patients with AIS. © 2014 S. Karger AG, Basel.

RealityConvert: a tool for preparing 3D models of biochemical structures for augmented and virtual reality.

PubMed

Borrel, Alexandre; Fourches, Denis

2017-12-01

There is a growing interest for the broad use of Augmented Reality (AR) and Virtual Reality (VR) in the fields of bioinformatics and cheminformatics to visualize complex biological and chemical structures. AR and VR technologies allow for stunning and immersive experiences, offering untapped opportunities for both research and education purposes. However, preparing 3D models ready to use for AR and VR is time-consuming and requires a technical expertise that severely limits the development of new contents of potential interest for structural biologists, medicinal chemists, molecular modellers and teachers. Herein we present the RealityConvert software tool and associated website, which allow users to easily convert molecular objects to high quality 3D models directly compatible for AR and VR applications. For chemical structures, in addition to the 3D model generation, RealityConvert also generates image trackers, useful to universally call and anchor that particular 3D model when used in AR applications. The ultimate goal of RealityConvert is to facilitate and boost the development and accessibility of AR and VR contents for bioinformatics and cheminformatics applications. http://www.realityconvert.com. dfourch@ncsu.edu. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Temporally resolved plasma spectroscopy for analyzing natural gas components

NASA Astrophysics Data System (ADS)

Kobayashi, Kazunobu; Tsumaki, Naomasa; Ito, Tsuyohito

2016-09-01

Temporally resolved plasma spectroscopy has been carried out in two different hydrocarbon gas mixtures (CH4/Ar and C2H6/Ar) to explore the possibility of a new gas sensor using plasma emission spectral analysis. In this experiment, a nanosecond-pulsed plasma discharge was applied to observe optical emissions representing the initial molecular structure. It is found that a CH emission intensity in CH4/Ar is higher than that in C2H6/Ar. On the other hand, C2 intensities are almost the same degree between CH4/Ar and C2H6/Ar. This finding indicates that the emission intensity ratio of CH to C2 might be an effective index for a gas analysis. In addition, a time for the highest emission intensities of CH and C2 is several nanoseconds later than that of Ar. This result suggests that spectra from the initial molecular structure may be observed at the early stage of the discharge before molecules are fully dissociated, and this is currently in progress.

Structural characterization of framework–gas interactions in the metal–organic framework Co 2 (dobdc) by in situ single-crystal X-ray diffraction

DOE PAGES

Gonzalez, Miguel I.; Mason, Jarad A.; Bloch, Eric D.; ...

2017-04-19

The crystallographic characterization of framework–guest interactions in metal–organic frameworks allows the location of guest binding sites and provides meaningful information on the nature of these interactions, enabling the correlation of structure with adsorption behavior. Here, techniques developed for in situ single-crystal X-ray diffraction experiments on porous crystals have enabled the direct observation of CO, CH 4, N 2, O 2, Ar, and P 4 adsorption in Co2(dobdc) (dobdc 4– = 2,5-dioxido-1,4-benzenedicarboxylate), a metal–organic framework bearing coordinatively unsaturated cobalt(II) sites. All these molecules exhibit such weak interactions with the high-spin cobalt(II) sites in the framework that no analogous molecular structures exist,more » demonstrating the utility of metal–organic frameworks as crystalline matrices for the isolation and structural determination of unstable species. Notably, the Co–CH 4 and Co–Ar interactions observed in Co 2(dobdc) represent, to the best of our knowledge, the first single-crystal structure determination of a metal–CH 4 interaction and the first crystallographically characterized metal–Ar interaction. Analysis of low-pressure gas adsorption isotherms confirms that these gases exhibit mainly physisorptive interactions with the cobalt(II) sites in Co 2(dobdc), with differential enthalpies of adsorption as weak as –17(1) kJ mol –1 (for Ar). Moreover, the structures of Co 2(dobdc)·3.8N 2, Co 2(dobdc)·5.9O 2, and Co 2(dobdc)·2.0Ar reveal the location of secondary (N 2, O 2, and Ar) and tertiary (O 2) binding sites in Co 2(dobdc), while high-pressure CO 2, CO, CH 4, N 2, and Ar adsorption isotherms show that these binding sites become more relevant at elevated pressures.« less

The evolution of the Cappadocia Geothermal Province, Anatolia (Turkey): geochemical and geochronological evidence

NASA Astrophysics Data System (ADS)

Şener, M. Furkan; Şener, Mehmet; Uysal, I. Tonguç

2017-12-01

Cappadocia Geothermal Province (CGP), central Turkey, consists of nine individual geothermal regions controlled by active regional fault systems. This paper examines the age dating of alteration minerals and the geochemistry (trace elements and isotopes) of the alteration minerals and geothermal waters, to assess the evolution of CGP in relation to regional tectonics. Ar-Ar age data of jarosite and alunite show that the host rocks were exposed to oxidizing conditions near the Earth's surface at about 5.30 Ma. Based on the δ18O-δD relationhip, water samples had a high altitude meteoric origin. The δ34S values of jarosite and alunite indicate that water samples from the southern part of the study area reached the surface after circulation through volcanic rocks, while northern samples had traveled to the surface after interacting with evaporates at greater depths. REY (rare earth elements and yttrium) diagrams of alteration minerals (especially illite, jarosite and alunite) from rock samples, taken from the same locations as the water samples, display a similar REY pattern to water samples. This suggests that thermal fluids, which reached the surface along a fault zone and caused the mineral alteration in the past, had similar chemical composition to the current geothermal water. The geothermal conceptual model, which defines a volcanically heated reservoir and cap rocks, suggests there are no structural drawbacks to the use of the CGP geothermal system as a resource. However, fluid is insufficient to drive the geothermal system as a result of scanty supply of meteoric water due to evaporation significantly exceeding rainfall.

Evidence for shock heating and constraints on Martian surface temperatures revealed by 40Ar/ 39Ar thermochronometry of Martian meteorites

NASA Astrophysics Data System (ADS)

Cassata, William S.; Shuster, David L.; Renne, Paul R.; Weiss, Benjamin P.

2010-12-01

The thermal histories of Martian meteorite are important for the interpretation of petrologic, geochemical, geochronological, and paleomagnetic constraints that they provide on the evolution of Mars. In this paper, we quantify 40Ar/ 39Ar ages and Ar diffusion kinetics of Martian meteorites Allan Hills (ALH) 84001, Nakhla, and Miller Range (MIL) 03346. We constrain the thermal history of each meteorite and discuss the resulting implications for their petrology, paleomagnetism, and geochronology. Maskelynite in ALH 84001 yields a 40Ar/ 39Ar isochron age of 4163 ± 35 Ma, which is indistinguishable from recent Pb-Pb ( Bouvier et al., 2009a) and Lu-Hf ages ( Lapen et al., 2010). The high precision of this result arises from clear resolution of a reproducible trapped 40Ar/ 36Ar component in maskelynite in ALH 84001 ( 40Ar/ 36Ar = 632 ± 90). The maskelynite 40Ar/ 39Ar age predates the Late Heavy Bombardment and likely represents the time at which the original natural remanent magnetization (NRM) component observed in ALH 84001 was acquired. Nakhla and MIL 03346 yield 40Ar/ 39Ar isochron ages of 1332 ± 24 and 1339 ± 8 Ma, respectively, which we interpret to date crystallization. Multi-phase, multi-domain diffusion models constrained by the observed Ar diffusion kinetics and 40Ar/ 39Ar age spectra suggest that localized regions within both ALH 84001 and Nakhla were intensely heated for brief durations during shock events at 1158 ± 110 and 913 ± 9 Ma, respectively. These ages may date the marginal melting of pyroxene in each rock, mobilization of carbonates and maskelynite in ALH 84001, and NRM overprints observed in ALH 84001. The inferred peak temperatures of the shock heating events (>1400 °C) are sufficient to mobilize Ar, Sr, and Pb in constituent minerals, which may explain some of the dispersion observed in 40Ar/ 39Ar, Rb-Sr, and U-Th-Pb data toward ages younger than ˜4.1 Ga. The data also place conservative upper bounds on the long-duration residence temperatures of the ALH 84001 and Nakhla protolith to be 22-∞+8 °C and 81-∞+9 °C over the last ˜4.16 Ga and ˜1.35 Ga, respectively. MIL 03346 has apparently not experienced significant shock-heating since it crystallized, consistent with the fact that various chronometers yield concordant ages.

Pieces of the ancient lunar crust - Ages and composition of clasts in consortium breccia 67915

NASA Technical Reports Server (NTRS)

Marti, K.; Jost, D. T.; Aeschlimann, U.; Eberhardt, P.; Geiss, J.; Groegler, N.; Laul, J. C.; Ma, M.-S.; Schmitt, R. A.; Taylor, G. J.

1983-01-01

The composition and chronology of clasts representing three minor lithologies in consortium breccia 67915 are discussed. The lithologies studied are: sodic ferrogabbro, pristine troctolitic anorthosite (67915,26), and granulitic troctolitic anorthosite (67915,67). These lithologies were presumed to represent samples of the ancient lunar crust. The pristine troctolitic anorthosite, a typical member of the pristine anorthosite suite, contains little or no trapped liquid consistent with its two-phase mineralogy. The plagioclase separates have Ar-39-Ar-40 plateau ages of 4.10 + or - 0.06 b.y., and a final rise in the age pattern may represent a 'memory' of the earlier evolution. The granulitic troctolitic anorthosite, which has 13 times larger REE abundances, displays a continuous rise of the Ar-40/Ar-39 ratio. The last 25 percent of the Ar-39 release data establish a minimum age of over 3.5 b.y., but the Pu-244/Nd chronology suggests an age of about 4.3 b.y. The sodic ferrogabbro samples, which appear to be members of the Mg-gabbronorite group of pristine rocks, show large Ar losses but indicate plateaus in the low-temperature data, suggesting a metamorphic event more recently than 260 m.y. ago, a time that is consistent with the North Ray impact event 50 m.y. ago.

TIME-VARIABLE ALUMINUM ABSORPTION IN THE POLAR AR URSAE MAJORIS, AND AN UPDATED ESTIMATE FOR THE MASS OF THE WHITE DWARF

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bai, Yu; Justham, Stephen; Liu, JiFeng

2016-09-01

We present spectra of the extreme polar AR Ursae Majoris (AR UMa), which display a clear Al i absorption doublet, alongside spectra taken less than a year earlier in which that feature is not present. Re-examination of earlier SDSS spectra indicates that the Al i absorption doublet was also present ≈8 years before our first non-detection. We conclude that this absorbing material is unlikely to be on the surface of either the white dwarf (WD) or the donor star. We suggest that this Al i absorption feature arises in circumstellar material, perhaps produced by the evaporation of asteroids as theymore » approach the hot WD. The presence of any remaining reservoir of rocky material in AR UMa might help to constrain the prior evolution of this unusual binary system. We also apply spectral decomposition to find the stellar parameters of the M dwarf companion, and attempt to dynamically measure the mass of the WD in AR UMa by considering both the radial velocity curves of the H {sub β} emission line and the Na i absorption line. Thereby we infer a mass range for the WD in AR UMa of 0.91 M {sub ⊙} < M {sub WD} < 1.24 M {sub ⊙}.« less

Time-variable Aluminum Absorption in the Polar AR Ursae Majoris, and an Updated Estimate for the Mass of the White Dwarf

NASA Astrophysics Data System (ADS)

Bai, Yu; Justham, Stephen; Liu, JiFeng; Guo, JinCheng; Gao, Qing; Gong, Hang

2016-09-01

We present spectra of the extreme polar AR Ursae Majoris (AR UMa), which display a clear Al I absorption doublet, alongside spectra taken less than a year earlier in which that feature is not present. Re-examination of earlier SDSS spectra indicates that the Al I absorption doublet was also present ≈8 years before our first non-detection. We conclude that this absorbing material is unlikely to be on the surface of either the white dwarf (WD) or the donor star. We suggest that this Al I absorption feature arises in circumstellar material, perhaps produced by the evaporation of asteroids as they approach the hot WD. The presence of any remaining reservoir of rocky material in AR UMa might help to constrain the prior evolution of this unusual binary system. We also apply spectral decomposition to find the stellar parameters of the M dwarf companion, and attempt to dynamically measure the mass of the WD in AR UMa by considering both the radial velocity curves of the H β emission line and the Na I absorption line. Thereby we infer a mass range for the WD in AR UMa of 0.91 M ⊙ < M WD < 1.24 M ⊙.

Identification and structural characterization of O-beta-ribosyl-(1"----2')-adenosine-5"-phosphate in yeast methionine initiator tRNA.

PubMed

Keith, G; Glasser, A L; Desgrès, J; Kuo, K C; Gehrke, C W

1990-10-25

We report in this paper on the complete structure determination of the modified nucleotide A*, now called Ar(p), that was previously identified in yeast methionine initiator tRNA as an isomeric form of O-ribosyl-adenosine bearing an additional phosphoryl-monoester group on its ribose2 moiety. By using the chemical procedure of periodate oxidation and subsequent beta-elimination with cyclohexylamine on mono- and dinucleotides containing Ar(p), we characterized the location of the phosphate group on the C-5" of the ribose2 moiety, and the linkage between the two riboses as a (1"----2')-glycosidic bond. Since the structural difference between phosphatase treated Ar(p) and authentic O-alpha-ribosyl-(1"----2')-adenosine from poly(ADP-Ribose) was previously assigned to an isomeric difference in the ribose2-ribose1 linkage, the (1"----2')-glycosidic bond of Ar(p) was deduced to have a beta-spatial configuration. Thus, final chemical structure for Ar(p) at the position 64 in yeast initiator tRNA(Met) has been established as O-beta-ribosyl-(1"----2')-adenosine-5"-phosphate. This nucleotide is linked by a 3',5'-phosphodiester bond to G at the position 65.

Rb-Sr and K-Ar age of globular phyllosilicates and biostratigraphy of the Riphean deposits of the Olenek Uplift (North Siberia)

NASA Astrophysics Data System (ADS)

Zaitseva, T. S.; Gorokhov, I. M.; Semikhatov, M. A.; Ivanovskaya, T. A.; Kuznetsov, A. B.; Dorzhieva, O. V.

2017-11-01

This work presents results of the complex mineralogical, geochemical, and isotope-geochronological investigation of globular dioctahedral 2: 1 phyllosilicates (GPS) of the illite-glauconite series from the Riphean sequences of the Olenek Uplift. It is established that GPS (glauconite, Al-glauconite, Fe-illite) in deposits of the Arymass, Debengda, and Khaipakh formations are represented by mixed-layer varieties of two types: (1) with relatively low (<10%) and (2) higher (10-20%) contents of expandable layers. Among the mixed-layer varieties are those with disordered alternation of micaceous and smectite layers (R = 0), as well as with tendency to ordering (R ≥ 1). The parameter b of an elementary cell of minerals varies from 9.18 to 9.72 Å. The Rb-Sr age dating of GPS was first carried out in combination with the calculation of theoretical pattern of the cation distribution in the mineral structure and comparison of the calculation results obtained with the Mössbauer and IR spectroscopy data. This approach is based on the assumption that development and evolution of isotope systems in GPS are synchronous with the evolution of the crystalline structure of the mineral at various stages of the geological and geochemical history of the development of sedimentary units. Analysis of the obtained data allows us to state that the structural features of the Riphean GPS from the Olenek section reflect the early diagenetic stages of the formation of the minerals studied. The 87Sr/86Sr initial ratios in the studied sediments are consistent with the range of variations in this ratio in the Middle Riphean Ocean (0.7049-0.7061). The Rb-Sr and K-Ar ages of the GPS of the Arymass (1305 ± 8 and 1302 Ma, respectively), Debengda (1265 ± 12 and 1284 ± 22 Ma), and Khaipakh (1172 ± 18 and 1112 ± 24 Ma) formations in the Olenek Uplift section are close to the accumulation time of corresponding deposits and, correspondingly, have significance for stratigraphic correlations.

1. OVERALL VIEW TO NORTH, SHOWING BOMBER REVETMENT AR8 IN ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

1. OVERALL VIEW TO NORTH, SHOWING BOMBER REVETMENT AR-8 IN RELATION TO THE HANGARS OF MAIN BASE IN THE FAR DISTANCE, AND THE AIRPLANE FIREFIGHTING TRAINING MODEL (STRUCTURE NO. 273) AT FAR RIGHT. PURSUIT PLANE REVETMENT AR-9 IS DIRECTLY BEHIND AR-8, THROUGH HIDDEN FROM THIS ANGLE. (Panoramic view number 1 of 2 for AR-8). - Edwards Air Force Base, South Base, Rammed Earth Aircraft Dispersal Revetments, Western Shore of Rogers Dry Lake, Boron, Kern County, CA

Tracking the timing of subduction and exhumation using 40Ar/39Ar phengite ages in blueschist- and eclogite-facies rocks (Sivrihisar, Turkey)

NASA Astrophysics Data System (ADS)

Fornash, Katherine F.; Cosca, Michael A.; Whitney, Donna L.

2016-07-01

Geochronologic studies of high-pressure/low-temperature rocks can be used to determine the timing and rates of burial and exhumation in subduction zones by dating different stages of the pressure-temperature history. In this study, we present new in situ UV laser ablation 40Ar/39Ar phengite ages from a suite of lawsonite blueschist- and eclogite-facies rocks representing different protoliths (metabasalt, metasediment), different structural levels (within and outside of a high-strain zone), and different textural positions (eclogite pod core vs. margin) to understand the timing of these events in an exhumed Neo-Tethyan subduction zone (Sivrihisar Massif, Tavşanlı Zone, Turkey). Weighted mean in situ 40Ar/39Ar ages of phengite from the cores of lawsonite eclogite pods (90-93 Ma) are distinctly older than phengite from retrogressed, epidote eclogite (82 ± 2 Ma). These ages are interpreted as the age of peak and retrograde metamorphism, respectively. Eclogite records the narrowest range of ages (10-14 m.y.) of any rock type analyzed. Transitional eclogite- and blueschist-facies assemblages and glaucophane-rimmed lawsonite + garnet + phengite veins from eclogite pod margins record a much wider age range of 40Ar/39Ar ages (~20 m.y.) with weighted mean ages of ~91 Ma. Blueschists and quartzites record more variable 40Ar/39Ar ages that may in part be related to structural position: samples within a high-strain zone at the tectonic contact of the HP rocks with a meta-ultramafic unit have in situ UV laser ablation 40Ar/39Ar ages of 84.0 ± 1.3-103.7 ± 3.1 Ma, whereas samples outside this zone range to older ages (84.6 ± 2.4-116.7 ± 2.7 Ma) and record a greater age range (22-38 m.y.). The phengite ages can be correlated with the preservation of HP mineral assemblages and fabrics as well as the effects of deformation. Collectively, these results show that high-spatial resolution UV laser ablation 40Ar/39Ar phengite data, when considered in a petrologic and structural context, may document prograde (burial) and retrograde (exhumation) stages of subduction metamorphism.

Non-uniform Erosion and Surface Evolution of Plasma-Facing Materials for Electric Propulsion

NASA Astrophysics Data System (ADS)

Matthes, Christopher Stanley Rutter

A study regarding the surface evolution of plasma-facing materials is presented. Experimental efforts were performed in the UCLA Pi Facility, designed to explore the physics of plasma-surface interactions. The influence of micro-architectured surfaces on the effects of plasma sputtering is compared with the response of planar samples. Ballistic deposition of sputtered atoms as a result of geometric re-trapping is observed. This provides a self-healing mechanism of micro-architectured surfaces during plasma exposure. This result is quantified using a QCM to demonstrate the evolution of surface features and the corresponding influence on the instantaneous sputtering yield. The sputtering yield of textured molybdenum samples exposed to 300 eV Ar plasma is found to be roughly 1 of the 2 corresponding value of flat samples, and increases with ion fluence. Mo samples exhibited a sputtering yield initially as low as 0.22+/-8%, converging to 0.4+/-8% at high fluence. Although the yield is dependent on the initial surface structure, it is shown to be transient, reaching a steady-state value that is independent of initial surface conditions. A continuum model of surface evolution resulting from sputtering, deposition and surface diffusion is also derived to resemble the damped Kuramoto-Sivashinsky (KS) equation of non-linear dynamics. Linear stability analysis of the evolution equation provides an estimate of the selected wavelength, and its dependence on the ion energy and angle of incidence. The analytical results are confirmed by numerical simulations of the equation with a Fast Fourier Transform method. It is shown that for an initially flat surface, small perturbations lead to the evolution of a selected surface pattern that has nano- scale wavelength. When the surface is initially patterned by other means, the final resulting pattern is a competition between the "templated" pattern and the "self-organized" structure. Potential future routes of research are also discussed, corresponding to a design analysis of the current experimental study.

Revealing the significance and polyphase tectonothermal evolution of a major metamorphic unit in an orogen: the central Sanandaj-Sirjan zone, Zagros Mts., Iran

NASA Astrophysics Data System (ADS)

Shakerardakani, Farzaneh; Neubauer, Franz; Genser, Johann; Liu, Xiaoming; Dong, Yunpeng; Monfaredi, Behzad; Benroider, Manfred; Finger, Fritz; Waitzinger, Michael

2016-04-01

The Dorud-Azna region in the central Sanandaj-Sirjan metamorphic belt plays a key role in promoting the tectonic evolution of Zagros orogen, within the frame of the Arabia-Eurasia collision zone. From footwall to hangingwall, structural data combined with the U-Pb zircon and extensive 40Ar-39Ar mineral dating survey demonstrate three metamorphosed tectonic units, which include: (1) The Triassic June complex is metamorphosed within greenschist facies conditions, overlain by (2) the amphibolite-grade metamorphic Galeh-Doz orthogneiss, which is intruded by mafic dykes, and (3) the Amphibolite-Metagabbro unit. To the east, these units were intruded by the Jurassic Darijune gabbro. We present U-Pb detrital zircon ages of a garnet-micaschist from the Amphibolite-Metagabbro unit, which yield six distinctive age groups, including a previously unrecognized Late Grenvillian age population at ~0.93 to 0.99 Ga. We speculate that this unique Late Grenvillian group coupled with biogeographic evidence suggests either relationship with the South China craton or to the "Gondwana superfan". The laser ablation ICP-MS U-Pb zircon ages of 608 ± 18 Ma and 588 ± 41 Ma of the granitic Galeh-Doz orthogneiss reveals a Panafrican basement same as known from the Yazd block of Central Iran. Geochemistry and Sr-Nd isotopes of alkaline and subalkaline mafic dykes within the Galeh-Doz orthogneiss show OIB-type to MORB-type and indicate involvement of both depleted and enriched sources for its genesis. The new 40Ar-39Ar amphibole age of ca. 322.2 ± 3.9 Ma from the alkaline mafic dyke implies Carboniferous cooling age after intrusion. The metagabbros (including the Dare-Hedavand metagabbro with a 206Pb/238U age of 314.6 ± 3.7 Ma) and amphibolites with E-MORB geochemical signature of the Amphibolite-Metagabbro unit represent an Upper Paleozoic rift. The geochemical composition of the Triassic greenschist facies metamorphosed June complex, implying formation in a same, but younger tectonic environment. The Darijune gabbro with the mean U-Pb zircon age of 170.2 ± 3.1 Ma postdates greenschist facies-grade metamorphism. This age marks the beginning of the initial subduction of Neotethyan oceanic in a continental arc setting. The best average P-T estimates for the metamorphic mineral assemblages of the Galeh-Doz orthogneiss range between 600 ± 50 °C at 2 ± 0.8 kbar. The subsequent cooling history after an amphibolite facies-grade metamorphism has been constrained with 40Ar-39Ar amphibole ages of plateau ages between 240-260 Ma. The estimate P-T conditions for the Carboniferous metagabbro from core (580 ± 50 °C, 4.0 ± 0.8 kbar) to rim (700 ± 20 °C, 7.5 ± 0.7 kbar) are in favor of a prograde P-T path. The new 40Ar-39Ar mineral ages integrated with structural field and microfabric studies reveals that the amphibolite-grade Carboniferous metagabbro indicate a Late Carboniferous age of amphibolite-grade metamorphism associated with ductile deformation of the new-detected Galeh-Doz nappe (Galeh-Doz orthogneiss and Amphibolite-Metagabbro unit). In the same unit, two lenses of metapelite including a garnet-muscovite-biotite schist give a P-T estimate of garnet cores from 640 ± 20 °C at 6.2 ± 0.8 kbar and garnet rims from 680 ± 20 °C at 7.2 ± 1.0 kbar, as well as garnet-biotite schist that yield lower P-T conditions, which vary from 620 °C at 5.5 ± 0.5 kbar in garnet cores to 600 ± 30 °C at 4.0 ± 1.0 kbar in garnet rims. Chemical monazite ages from garnet micaschists are at 322 ± 28 Ma. 40Ar-39Ar experiments on white mica in the first and second types yield staircase patterns from ca. 36 to 170 Ma and a plateau age of 137.84 ± 0.65 Ma, respectively. Taking all data together, we suggest that amphibolite-grade metamorphism is Carboniferous and is overprinted by two events: (1) during Late Jurassic- Cretaceous during ductile dextral transpressive nappe emplacement of the Galeh-Doz nappe over the June complex (peak conditions of greenschist facies metamorphism at ca. 107 Ma followed by an overprint at 50 Ma) and (2) in ca. 50-32 Ma during shortening and emplacement of the metamorphic nappe complexes over unmetamorphic units of the Zagros orogen.

K/Ar dating of lunar soils. II

NASA Technical Reports Server (NTRS)

Alexander, E. C., Jr.; Bates, A.; Coscio, M. R., Jr.; Dragon, J. C.; Murthy, V. R.; Pepin, R. O.; Venkatesan, T. R.

1976-01-01

An attempt is made to identify those K/Ar techniques which extract the most reliable chronological information from lunar soils and to define the situations in which the best data are obtainable. Results are presented for determinations of the exposure and K/Ar ages of five lunar soil samples, which were performed by applying correlation techniques for a two-component argon structure to stepwise-heated and neutron-irradiated aliquots of grain-sized separates. It is found that ages deduced from Ar-40/surface-correlated Ar-36 vs K-40/surface-correlated Ar-36 and analogous plots of data from grain-sized separates appear to be the best available K/Ar ages of submature to mature lunar soils, that ages deduced from Ar-40 vs Ar-36 and analogous plots which assume a uniform K content can be significantly in error, and that stepwise-heating (Ar-40)-(Ar-39) experiments yield useful information only for simple immature soils where the K-Ar systematics are dominated by a single component.

Scalable Production of Mechanically Robust Antireflection Film for Omnidirectional Enhanced Flexible Thin Film Solar Cells.

PubMed

Wang, Min; Ma, Pengsha; Yin, Min; Lu, Linfeng; Lin, Yinyue; Chen, Xiaoyuan; Jia, Wei; Cao, Xinmin; Chang, Paichun; Li, Dongdong

2017-09-01

Antireflection (AR) at the interface between the air and incident window material is paramount to boost the performance of photovoltaic devices. 3D nanostructures have attracted tremendous interest to reduce reflection, while the structure is vulnerable to the harsh outdoor environment. Thus the AR film with improved mechanical property is desirable in an industrial application. Herein, a scalable production of flexible AR films is proposed with microsized structures by roll-to-roll imprinting process, which possesses hydrophobic property and much improved robustness. The AR films can be potentially used for a wide range of photovoltaic devices whether based on rigid or flexible substrates. As a demonstration, the AR films are integrated with commercial Si-based triple-junction thin film solar cells. The AR film works as an effective tool to control the light travel path and utilize the light inward more efficiently by exciting hybrid optical modes, which results in a broadband and omnidirectional enhanced performance.

Interface properties of SiO2/GaN structures formed by chemical vapor deposition with remote oxygen plasma mixed with Ar or He

NASA Astrophysics Data System (ADS)

Truyen, Nguyen Xuan; Taoka, Noriyuki; Ohta, Akio; Makihara, Katsunori; Yamada, Hisashi; Takahashi, Tokio; Ikeda, Mitsuhisa; Shimizu, Mitsuaki; Miyazaki, Seiichi

2018-06-01

The impacts of noble gas species (Ar and He) on the formation of a SiO2/GaN structure formed by a remote oxygen plasma-enhanced chemical vapor deposition (ROPE-CVD) method were systematically investigated. Atomic force microscopy revealed that ROPE-CVD with He leads to a smooth SiO2 surface compared with the case of Ar. We found that no obvious oxidations of the GaN surfaces after the SiO2 depositions with the both Ar and He cases were observed. The capacitance–voltage (C–V) curves of the GaN MOS capacitors formed by ROPE-CVD with the Ar and He dilutions show good interface properties with no hysteresis and good agreement with the ideal C–V curves even after post deposition annealing at 800 °C. Besides, we found that the current density–oxide electric field characteristics shows a gate leakage current for the Ar case lower than the He case.

Scalable Production of Mechanically Robust Antireflection Film for Omnidirectional Enhanced Flexible Thin Film Solar Cells

PubMed Central

Wang, Min; Ma, Pengsha; Lu, Linfeng; Lin, Yinyue; Chen, Xiaoyuan; Jia, Wei; Cao, Xinmin; Chang, Paichun

2017-01-01

Antireflection (AR) at the interface between the air and incident window material is paramount to boost the performance of photovoltaic devices. 3D nanostructures have attracted tremendous interest to reduce reflection, while the structure is vulnerable to the harsh outdoor environment. Thus the AR film with improved mechanical property is desirable in an industrial application. Herein, a scalable production of flexible AR films is proposed with microsized structures by roll‐to‐roll imprinting process, which possesses hydrophobic property and much improved robustness. The AR films can be potentially used for a wide range of photovoltaic devices whether based on rigid or flexible substrates. As a demonstration, the AR films are integrated with commercial Si‐based triple‐junction thin film solar cells. The AR film works as an effective tool to control the light travel path and utilize the light inward more efficiently by exciting hybrid optical modes, which results in a broadband and omnidirectional enhanced performance. PMID:28932667

Sequential structural and optical evolution of MoS2 by chemical synthesis and exfoliation

NASA Astrophysics Data System (ADS)

Kim, Ju Hwan; Kim, Jungkil; Oh, Si Duck; Kim, Sung; Choi, Suk-Ho

2015-06-01

Various types of MoS2 structures are successfully obtained by using economical and facile sequential synthesis and exfoliation methods. Spherically-shaped lumps of multilayer (ML) MoS2 are prepared by using a conventional hydrothermal method and were subsequently 1st-exfoliated in hydrazine while being kept in autoclave to be unrolled and separated into five-to-six-layer MoS2 pieces of several-hundred nm in size. The MoS2 MLs are 2nd-exfoliated in sodium naphthalenide under an Ar ambient to finally produce bilayer MoS2 crystals of ~100 nm. The sequential exfoliation processes downsize MoS2 laterally and reduce its number of layers. The three types of MoS2 allotropes exhibit particular optical properties corresponding to their structural differences. These results suggest that two-dimensional MoS2 crystals can be prepared by employing only chemical techniques without starting from high-pressure-synthesized bulk MoS2 crystals.

Automated design evolution of stereochemically randomized protein foldamers

NASA Astrophysics Data System (ADS)

Ranbhor, Ranjit; Kumar, Anil; Patel, Kirti; Ramakrishnan, Vibin; Durani, Susheel

2018-05-01

Diversification of chain stereochemistry opens up the possibilities of an ‘in principle’ increase in the design space of proteins. This huge increase in the sequence and consequent structural variation is aimed at the generation of smart materials. To diversify protein structure stereochemically, we introduced L- and D-α-amino acids as the design alphabet. With a sequence design algorithm, we explored the usage of specific variables such as chirality and the sequence of this alphabet in independent steps. With molecular dynamics, we folded stereochemically diverse homopolypeptides and evaluated their ‘fitness’ for possible design as protein-like foldamers. We propose a fitness function to prune the most optimal fold among 1000 structures simulated with an automated repetitive simulated annealing molecular dynamics (AR-SAMD) approach. The highly scored poly-leucine fold with sequence lengths of 24 and 30 amino acids were later sequence-optimized using a Dead End Elimination cum Monte Carlo based optimization tool. This paper demonstrates a novel approach for the de novo design of protein-like foldamers.

The 40Ar/39Ar dating technique applied to planetary sciences

NASA Astrophysics Data System (ADS)

Jourdan, F.

2012-12-01

The 40Ar/39Ar technique is a powerful geochronological method that can help to unravel the evolution of the solar system. The 40Ar/39Ar system can not only record the timing of volcanic and metamorphic processes on asteroids and planets, it finds domain of predilection in dating impact events throughout the solar system. However, the 40Ar/39Ar method is a robust analytical technique if, and only if, the events to be dated are well understood and data are not over interpreted. Yet, too many 'ages' reported in the literature are still based on over-interpretation of perturbed age spectra which tends to blur the big picture. This presentation is centred on the most recent applications of the 40Ar/39Ar technique applied to planetary material and through several examples, will attempt to demonstrate the benefit of focusing on statistically robust data. For example, 40Ar/39Ar dating of volcanic events on the Moon suggests that volcanism was mostly concentrated between ca. 3.8 and 3.1 Ga but statistical filtering of the data allow identifying a few well-defined eruptive events. The study of lunar volcanism would also benefit from dating of volcanic spherules. Rigorous filtering of the 40Ar/39Ar age database of lunar melt breccias yielded concordant and ages with high precision for two major basins (i.e. Imbrium & Serenitatis) of the Moon. 40Ar/39Ar dating of lunar impact spherules recovered from four different sites and with high- and low-K compositions shows an increase of ages younger than 400 Ma suggesting a recent increase in the impact flux. The impact history of the LL parent body (bodies?) has yet to be well constrained but may mimic the LHB observed on the Moon, which would indicate that the LL parent body was quite large. 40Ar/39Ar dating (in progress) of grains from the asteroid Itokawa recovered by the japanese Hayabusa mission have the potential to constrain the formation history and exposure age of Itokawa and will allow us to compare the results with the impact history recorded by LL chondrites. Basaltic meteorites (HEDs) show a 40Ar/39Ar age range between 4.1 and 3.4 Ga, suggesting a diffuse LHB event; however, the spread of apparent ages may be a data interpretation artefact, as new solid plateau age data suggest that the bombardment by large asteroids might have occurred over a briefer period between 3.5 and 3.8 Ga.

Printing of structures less than 0,3 μm by i-line exposure using resists TDMR-AR80 and TDMR-AR95

NASA Astrophysics Data System (ADS)

Behrendt, A.; Dow, T.; Stoeflin, K.

2007-03-01

There is increasing interest in high resolution i-line resists which allow the printing of structures smaller than 0.3μm. We have evaluated the resists TDMR-AR80 und TDMR-AR95 from TOK Company in order to check their potential concerning minimum line sizes with sufficient process window in regard to focus/exposure process latitude, with our main focus on trench structures. The Bossung Plots of dense lines and semi-dense lines were determined. The resist and etch profiles were characterised both by inline-SEM measurements and cross-sections. The influence of several stepper illumination modes and Off Axis Illumination (OAI) on the focus/exposure process window was investigated. The resists TDMR-AR80 and TDMR-AR95 enable printing of trench structures less than 0.3μm. For 0.3μm lines, our specification limit of 0.3μm +/- 10% was reached within a focus range from - 0.1 to 1.0 microns. OAI illumination mode enlarged the focus window by 20% in comparison to the standard illumination mode. Structures of 0.28μm and 0.26μm were printed with a focus window of 0.7μm which shows the high potential of this resist generation. The implementation of the resist in production provides large amounts of data which enable the calculation of parameters related to process stability (wafer to wafer and lot to lot CD-standard deviation, Cp-, Cpk-values etc.).

Transcriptional and posttranscriptional regulation of Bacillus sp. CDB3 arsenic-resistance operon ars1

PubMed Central

Yu, Xuefei; Zheng, Wei; Bhat, Somanath; Aquilina, J. Andrew

2015-01-01

Bacillus sp. CDB3 possesses a novel eight-gene ars cluster (ars1, arsRYCDATorf7orf8) with some unusual features in regard to expression regulation. This study demonstrated that the cluster is a single operon but can also produce a short three-gene arsRYC transcript. A hairpin structure formed by internal inverted repeats between arsC and arsD was shown to diminish the expression of the full operon, thereby probably acting as a transcription attenuator. A degradation product of the arsRYC transcript was also identified. Electrophoretic mobility shift analysis demonstrated that ArsR interacts with the ars1 promoter forming a protein-DNA complex that could be impaired by arsenite. However, no interaction was detected between ArsD and the ars1 promoter, suggesting that the CDB3 ArsD protein may not play a regulatory role. Compared to other ars gene clusters, regulation of the Bacillus sp. CDB3 ars1 operon is more complex. It represents another example of specific mRNA degradation in the transporter gene region and possibly the first case of attenuator-mediated regulation of ars operons. PMID:26355338

The crystal structure of a partial mouse Notch-1 ankyrin domain: Repeats 4 through 7 preserve an ankyrin fold

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lubman, Olga Y.; Kopan, Raphael; Waksman, Gabriel

Folding and stability of proteins containing ankyrin repeats (ARs) is of great interest because they mediate numerous protein-protein interactions involved in a wide range of regulatory cellular processes. Notch, an ankyrin domain containing protein, signals by converting a transcriptional repression complex into an activation complex. The Notch ANK domain is essential for Notch function and contains seven ARs. Here, we present the 2.2 {angstrom} crystal structure of ARs 4-7 from mouse Notch 1 (m1ANK). These C-terminal repeats were resistant to degradation during crystallization, and their secondary and tertiary structures are maintained in the absence of repeats 1-3. The crystallized fragmentmore » adopts a typical ankyrin fold including the poorly conserved seventh AR, as seen in the Drosophila Notch ANK domain (dANK). The structural preservation and stability of the C-terminal repeats shed a new light onto the mechanism of hetero-oligomeric assembly during Notch-mediated transcriptional activation.« less

Connecting Coronal Mass Ejections to Their Solar Active Region Sources: Combining Results from the HELCATS and FLARECAST Projects

NASA Astrophysics Data System (ADS)

Murray, Sophie A.; Guerra, Jordan A.; Zucca, Pietro; Park, Sung-Hong; Carley, Eoin P.; Gallagher, Peter T.; Vilmer, Nicole; Bothmer, Volker

2018-04-01

Coronal mass ejections (CMEs) and other solar eruptive phenomena can be physically linked by combining data from a multitude of ground-based and space-based instruments alongside models; however, this can be challenging for automated operational systems. The EU Framework Package 7 HELCATS project provides catalogues of CME observations and properties from the Heliospheric Imagers on board the two NASA/STEREO spacecraft in order to track the evolution of CMEs in the inner heliosphere. From the main HICAT catalogue of over 2,000 CME detections, an automated algorithm has been developed to connect the CMEs observed by STEREO to any corresponding solar flares and active-region (AR) sources on the solar surface. CME kinematic properties, such as speed and angular width, are compared with AR magnetic field properties, such as magnetic flux, area, and neutral line characteristics. The resulting LOWCAT catalogue is also compared to the extensive AR property database created by the EU Horizon 2020 FLARECAST project, which provides more complex magnetic field parameters derived from vector magnetograms. Initial statistical analysis has been undertaken on the new data to provide insight into the link between flare and CME events, and characteristics of eruptive ARs. Warning thresholds determined from analysis of the evolution of these parameters is shown to be a useful output for operational space weather purposes. Parameters of particular interest for further analysis include total unsigned flux, vertical current, and current helicity. The automated method developed to create the LOWCAT catalogue may also be useful for future efforts to develop operational CME forecasting.

Did Adult Diurnal Activity Influence the Evolution of Wing Morphology in Opoptera Butterflies?

PubMed

Penz, C M; Heine, K B

2016-02-01

The butterfly genus Opoptera includes eight species, three of which have diurnal habits while the others are crepuscular (the usual activity period for members of the tribe Brassolini). Although never measured in the field, it is presumed that diurnal Opoptera species potentially spend more time flying than their crepuscular relatives. If a shift to diurnal habits potentially leads to a higher level of activity and energy expenditure during flight, then selection should operate on increased aerodynamic and energetic efficiency, leading to changes in wing shape. Accordingly, we ask whether diurnal habits have influenced the evolution of wing morphology in Opoptera. Using phylogenetically independent contrasts and Wilcoxon rank sum tests, we confirmed our expectation that the wings of diurnal species have higher aspect ratios (ARs) and lower wing centroids (WCs) than crepuscular congeners. These wing shape characteristics are known to promote energy efficiency during flight. Three Opoptera wing morphotypes established a priori significantly differed in AR and WC values. The crepuscular, cloud forest dweller Opoptera staudingeri (Godman & Salvin) was exceptional in having an extended forewing tip and the highest AR and lowest WC within Opoptera, possibly to facilitate flight in a cooler environment. Our study is the first to investigate how butterfly wing morphology might evolve as a response to a behavioral shift in adult time of activity.

Preparation and stress evolution of sol–gel SiO{sub 2} antireflective coatings for small-size anisotropic lithium triborate crystals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tian, Bingtao; Wang, Xiaodong, E-mail: xiaodong-wang@tongji.edu.cn; Niu, Yanyan

2016-04-15

Lithium triborate (LiB{sub 3}O{sub 5}, LBO) crystal is now one of the most useful nonlinear optical materials for frequency conversion of high power lasers. The use of the crystal, however, has been hampered by the unavailability of antireflective (AR) coatings with high laser damage resistance. In this work, a “point contact” dip-coating method is developed to prepare sol–gel SiO{sub 2} AR coatings on small-size LBO crystals. Using this approach, we obtain a homogenous coating surface on an 8 mm×8 mm×3 mm LBO crystal. The stress measurements show that the stresses in sol–gel SiO{sub 2} coatings vary with the time ofmore » natural drying, which is beyond our expectation. The anisotropic Young’s modulus of the LBO crystal and the different evolution tendency of the stress in the different SiO{sub 2} coating layers are found to be responsible for the crack of the double-layer AR coatings on anisotropic LBO crystal. Meanwhile, the resulting coatings on LBO crystal achieve a LIDT of over 15 J/cm{sup 2} (532 nm, 3ns) and the coated LBO is expected to have a transmittance of over 99% at 800 nm.« less

Damage classification and estimation in experimental structures using time series analysis and pattern recognition

NASA Astrophysics Data System (ADS)

de Lautour, Oliver R.; Omenzetter, Piotr

2010-07-01

Developed for studying long sequences of regularly sampled data, time series analysis methods are being increasingly investigated for the use of Structural Health Monitoring (SHM). In this research, Autoregressive (AR) models were used to fit the acceleration time histories obtained from two experimental structures: a 3-storey bookshelf structure and the ASCE Phase II Experimental SHM Benchmark Structure, in undamaged and limited number of damaged states. The coefficients of the AR models were considered to be damage-sensitive features and used as input into an Artificial Neural Network (ANN). The ANN was trained to classify damage cases or estimate remaining structural stiffness. The results showed that the combination of AR models and ANNs are efficient tools for damage classification and estimation, and perform well using small number of damage-sensitive features and limited sensors.

Basal accretion, a major mechanism for mountain building in Taiwan revealed in rock thermal history

NASA Astrophysics Data System (ADS)

Chen, Chih-Tung; Chan, Yu-Chang; Lo, Ching-Hua; Malavieille, Jacques; Lu, Chia-Yu; Tang, Jui-Ting; Lee, Yuan-Hsi

2018-02-01

Deep tectonic processes are key integral components in the evolution of mountain belts, while observations of their temporal development are generally obscured by thermal resetting, retrograde alteration and structural overprinting. Here we recorded an integrated rock time-temperature history for the first time in the pro-wedge part of the active Taiwan arc-continent collision starting from sedimentation through cleavage-forming state to its final exhumation. The integrated thermal and age results from the Raman Spectroscopy of Carbonaceous Material (RSCM) method, zircon U-Pb laser ablation dating, and in-situ40Ar/39Ar laser microprobe dating suggest that the basal accretion process was crucial to the development of the Taiwanese orogenic wedge. The basal accretion process commenced early in the mountain building history (∼6 Ma) and gradually migrated to greater depths, as constrained by persistent plate convergence and cleavage formation under nearly isothermal state at similar depths until ∼ 2.5 Ma recorded in the early-accreted units. Such development essentially contributed to mountain root growth by the increased depth of the wedge detachment and the downward wedge thickening during the incipient to full collision stages in the Taiwan mountain belt.

Age of the Lava Creek supereruption and magma chamber assembly at Yellowstone based on 40Ar/39Ar and U-Pb dating of sanidine and zircon crystals

NASA Astrophysics Data System (ADS)

Vazquez, J. A.; Matthews, N. E.; Calvert, A. T.

2015-12-01

The last supereruption from the Yellowstone Plateau formed Yellowstone caldera and ejected the >1000 km3 of rhyolite that composes the Lava Creek Tuff (LCT). Tephra from the eruption blanketed much of the western United States, and is a key Quaternary chronostratigraphic marker, in particular for dating deposition of mid-Pleistocene glacial and pluvial deposits in western North America. We performed 40Ar/39Ar dating of single sanidines to delimit eruption age, and ion microprobe U-Pb and trace-element analyses of crystal faces on single zircons to characterize magmatic evolution and date near-eruption crystallization, as well as analyses of crystal interiors to date the interval of zircon crystallization. Sanidines from the two LCT members A and B yield an 40Ar/39Ar isochron date of 631 ± 4 ka (2σ). Crystal faces on zircons from both members yield a weighted mean 206Pb/238U date of 627 ± 6 ka (2σ) and have trace element concentrations that vary with eruptive stratigraphy. Zircon interiors yield a weighted mean 206Pb/238U date of 660 ± 6 ka, and reveal reverse and/or oscillatory zoning of trace element concentrations, with many crystals containing high-U concentrations and dark cathodoluminescence (CL) cores. These crystals with high-U cores are possibly sourced from 'defrosting' of melt-impregnated margins of the growing subvolcanic reservoir. LCT sanidines mirror the variation of zircon composition within the eruptive stratigraphy, with crystals from upper LCT-A and basal LCT-B having bright-CL rims with high Ba concentrations, suggesting late crystallization after addition of less evolved silicic magma. The occurrence of distal LCT in stratigraphic sequences marking the Marine Isotope Stage 16-15 transition supports the apparent eruption age of ca. 631 ka. These results reveal that Lava Creek zircons record episodic heating, renewed crystallization, and an overall up-temperature evolution for Yellowstone's subvolcanic reservoir in the 103-104 year interval before eruption.

Geological evolution of the Boset-Bericha Volcanic Complex, Main Ethiopian Rift: 40Ar/39Ar evidence for episodic Pleistocene to Holocene volcanism

NASA Astrophysics Data System (ADS)

Siegburg, Melanie; Gernon, Thomas M.; Bull, Jonathan M.; Keir, Derek; Barfod, Dan N.; Taylor, Rex N.; Abebe, Bekele; Ayele, Atalay

2018-02-01

The Boset-Bericha Volcanic Complex (BBVC) is one of the largest stratovolcanoes of the northern Main Ethiopian Rift (MER). However, very little is known about its eruptive history, despite the fact that approximately 4 million people live within 100 km of the complex. Here, we combine field observations, morphometric analysis using high-resolution LiDAR data, geochemistry and 40Ar/39Ar geochronology to report the first detailed account of the geological evolution of the BBVC, with a focus on extensive young lava flows covering the two edifices, Gudda and Bericha. These lavas exhibit a bimodal composition ranging dominantly from basaltic rift floor lavas and scoria cones, to pantelleritic trachytes and rhyolite flows at Gudda, and comenditic rhyolites at Bericha. Further, several intermediate compositions are associated with fissure vents along the Boset-Kone segment that also appear to link the silicic centres. We divide the BBVC broadly into four main eruptive stages, comprising: (1) early rift floor emplacement, (2) formation of Gudda Volcano within two main cycles, separated by caldera formation, (3) formation of the Bericha Volcano, and (4) sporadic fissure eruptions. Our new 40Ar/39Ar geochronology, targeting a representative array of these flows, provides evidence for episodic activity at the BBVC from 120 ka to the present-day. We find that low-volume mafic episodes are more frequent ( 10 ka cyclicity) than felsic episodes ( 100 ka cyclicity), but the latter are more voluminous. Over the last 30 ka, mafic to intermediate fissure activity might have reinvigorated felsic activity (over the last 16 ka), manifested as peralkaline lava flows and pyroclastic deposits at Gudda and Bericha. Felsic episodes have on average a higher eruption rate (2-5/1000 years) and productivity at Gudda compared to Bericha (1-2/1000 years). The young age of lavas and current fumarolic activity along the fault system, suggest that the BBVC is still potentially active. Coincident episodic activity within the BBVC and at several rift segments in the MER is observed, and facilitates continental rifting.

The Inland Penetration of Atmospheric Rivers over Western North America: A Lagrangian Analysis

NASA Astrophysics Data System (ADS)

Rutz, J. J.; Steenburgh, W. J.; Ralph, F. M.

2014-12-01

Although atmospheric rivers (ARs) typically weaken following landfall, those that penetrate inland can contribute to heavy precipitation and high-impact weather within the interior of western North America. In this paper, we examine the evolution of ARs over western North America using trajectories released at 950 and 700 hPa within cool-season ARs along the Pacific coast. These trajectories are classified as coastal decaying, inland penetrating, or interior penetrating based on whether they remain within an AR upon reaching selected transects over western North America. Interior-penetrating AR trajectories most frequently make landfall along the Oregon coast, but the greatest fraction of landfalling AR trajectories that eventually penetrate into the interior is found along the Baja Peninsula. In contrast, interior-penetrating trajectories rarely traverse the southern "high" Sierra. At landfall, interior-penetrating trajectories are associated with a more amplified flow pattern, more southwesterly (vs. westerly) flow along the Pacific coast, and larger water vapor transport (qu). The larger initial qu of interior-penetrating trajectories is due primarily to larger initial water vapor (q) and wind speed (u) for those initiated at 950 and 700 hPa, respectively. Inland- and interior-penetrating AR trajectories maintain large qu over the interior due partially to increases in u that offset decreases in q, particularly in the vicinity of topographical barriers. Therefore, synoptic conditions and trajectory pathways favoring larger initial qu at the coast, limited water vapor depletion by orographic precipitation, and increases in u over the interior are keys to differentiating interior-penetrating from coastal-decaying AR trajectories.

Influence of habitat structure on fish assemblage of an artificial reef in southern Brazil.

PubMed

Hackradt, Carlos Werner; Félix-Hackradt, Fabiana Cézar; García-Charton, José Antonio

2011-12-01

Habitat complexity strongly influences reef fish community composition. An understanding of the underlying reasons for this relationship is important for evaluating the suitability of artificial reef (AR) habitats as a marine resource management tool. We studied the influence of AR habitat structure on fish assemblage composition off the southern coast of Brazil. We found that reef blocks with greater area and number of holes possessed the greatest fish species richness and abundance. Reef blocks with greater complexity had higher abundance of almost 30% of fish species present. Natural reef (NR) and AR were different in their fish species composition, trophic structure and categories of water column occupancy by fish (spatial categories). Although NR was more diverse and harboured more trophic levels, AR presented the higher abundances and the presence of distinct fish species that underlined their importance at a regional scale. The greater availability of sheltering habitat where hard substrate is scarce, together with their frequent use by economically important species, make AR a useful tool for coastal management when certain ecological conditions are met. Copyright © 2011 Elsevier Ltd. All rights reserved.

Development of Selective Androgen Receptor Modulators (SARMs)

PubMed Central

Narayanan, Ramesh; Coss, Christopher C.; Dalton, James T.

2018-01-01

The Androgen Receptor (AR), a member of the steroid hormone receptor family, plays important roles in the physiology and pathology of diverse tissues. AR ligands, which include circulating testosterone and locally synthesized dihydrotestosterone, bind to and activate the AR to elicit their effects. Ubiquitous expression of the AR, metabolism and cross reactivity with other receptors limit broad therapeutic utilization of steroidal androgens. However, the discovery of selective androgen receptor modulators (SARMs) and other tissue-selective nuclear hormone receptor modulators that activate their cognate receptors in a tissue-selective manner provides an opportunity to promote the beneficial effects of androgens and other hormones in target tissues with greatly reduced unwanted side-effects. In the last two decades, significant resources have been dedicated to the discovery and biological characterization of SARMs in an effort to harness the untapped potential of the AR. SARMs have been proposed as treatments of choice for various diseases, including muscle-wasting, breast cancer, and osteoporosis. This review provides insight into the evolution of SARMs from proof-of-concept agents to the cusp of therapeutic use in less than two decades, while covering contemporary views of their mechanisms of action and therapeutic benefits. PMID:28624515

Stabilizing IkappaBalpha by "consensus" design.

PubMed

Ferreiro, Diego U; Cervantes, Carla F; Truhlar, Stephanie M E; Cho, Samuel S; Wolynes, Peter G; Komives, Elizabeth A

2007-01-26

IkappaBalpha is the major regulator of transcription factor NF-kappaB function. The ankyrin repeat region of IkappaBalpha mediates specific interactions with NF-kappaB dimers, but ankyrin repeats 1, 5 and 6 display a highly dynamic character when not in complex with NF-kappaB. Using chemical denaturation, we show here that IkappaBalpha displays two folding transitions: a non-cooperative conversion under weak perturbation, and a major cooperative folding phase upon stronger insult. Taking advantage of a native Trp residue in ankyrin repeat (AR) 6 and engineered Trp residues in AR2, AR4 and AR5, we show that the cooperative transition involves AR2 and AR3, while the non-cooperative transition involves AR5 and AR6. The major structural transition can be affected by single amino acid substitutions converging to the "consensus" ankyrin repeat sequence, increasing the native state stability significantly. We further characterized the structural and dynamic properties of the native state ensemble of IkappaBalpha and the stabilized mutants by H/(2)H exchange mass spectrometry and NMR. The solution experiments were complemented with molecular dynamics simulations to elucidate the microscopic origins of the stabilizing effect of the consensus substitutions, which can be traced to the fast conformational dynamics of the folded ensemble.

Nuclear scaffold attachment stimulates, but is not essential for ARS activity in Saccharomyces cerevisiae: analysis of the Drosophila ftz SAR.

PubMed Central

Amati, B; Pick, L; Laroche, T; Gasser, S M

1990-01-01

Nuclei isolated from eukaryotic cells can be depleted of histones and most soluble nuclear proteins to isolate a structural framework called the nuclear scaffold. This structure maintains specific interactions with genomic DNA at sites known as scaffold attached regions (SARs), which are thought to be the bases of DNA loops. In both Saccharomyces cerevisiae and Schizosaccharomyces pombe, genomic ARS elements are recovered as SARs. In addition, SARs from Drosophila melanogaster bind to yeast nuclear scaffolds in vitro and a subclass of these promotes autonomous replication of plasmids in yeast. In the present report, we present fine mapping studies of the Drosophila ftz SAR, which has both SAR and ARS activities in yeast. The data establish a close relationship between the sequences involved in ARS activity and scaffold binding: ARS elements that can bind the nuclear scaffold in vitro promote more efficient plasmid replication in vivo, but scaffold association is not a strict prerequisite for ARS function. Efficient interaction with nuclear scaffolds from both yeast and Drosophila requires a minimal length of SAR DNA that contains reiteration of a narrow minor groove structure of the double helix. Images Fig. 1. Fig. 2. Fig. 3. Fig. 4. PMID:2123454

Mechanistic Study on Cu(II)-Catalyzed Oxidative Cross-Coupling Reaction between Arenes and Boronic Acids under Aerobic Conditions.

PubMed

Zhang, Qian; Liu, Yang; Wang, Ting; Zhang, Xinhao; Long, Chao; Wu, Yun-Dong; Wang, Mei-Xiang

2018-04-25

Substantial attention has been given to modern organocopper chemistry in recent years since copper salts are naturally abundant, cheap, and less toxic in comparison to precious metals. Copper salts also exhibit versatility in catalyzing and mediating carbon-carbon and carbon-heteroatom bond forming reactions. Despite the wide applications of copper salts in catalysis, reaction mechanisms have remained elusive. Using azacalix[1]arene[3]pyridine, an arene-embedded macrocycle, and its isolated and structurally well-defined ArCu(II) and ArCu(III) compounds as molecular tools, we now report an in-depth experimental and computational study on the mechanism of a Cu(II)-catalyzed oxidative cross-coupling reaction between arenes and boronic acids with air as the oxidant. Stoichiometric reaction of organocopper compounds with p-tolylboronic acid validated arylcopper(II) rather than arylcopper(III) as a reactive organometallic intermediate. XPS, EPR, 1 H NMR, HRMS, and UV-vis spectroscopic evidence along with the isolation and quantification of all products and copper speciation, combined with computational analysis of the electronic structure and energetics of the transient intermediates, suggested a reaction sequence involving electrophilic metalation of arene by Cu(II), transmetalation of arylboronate to ArCu(II), the redox reaction between the resulting ArCu(II)Ar' and ArCu(II) to form respectively ArCu(III)Ar' and ArCu(I), and finally reductive elimination of ArCu(III)Ar'. Under aerobic catalytic conditions, all Cu(I) ions released from reductive elimination of ArCu(III)Ar' and from protolysis of ArCu(I) were oxidized by oxygen to regenerate Cu(II) species that enters into the next catalytic cycle. The unraveled reactivity of arylcopper(II) compounds and the catalytic cycle would enrich our knowledge of modern organocopper chemistry and provide useful information in the design of copper-catalyzed reactions.

Microscale High-Throughput Experimentation as an Enabling Technology in Drug Discovery: Application in the Discovery of (Piperidinyl)pyridinyl-1H-benzimidazole Diacylglycerol Acyltransferase 1 Inhibitors.

PubMed

Cernak, Tim; Gesmundo, Nathan J; Dykstra, Kevin; Yu, Yang; Wu, Zhicai; Shi, Zhi-Cai; Vachal, Petr; Sperbeck, Donald; He, Shuwen; Murphy, Beth Ann; Sonatore, Lisa; Williams, Steven; Madeira, Maria; Verras, Andreas; Reiter, Maud; Lee, Claire Heechoon; Cuff, James; Sherer, Edward C; Kuethe, Jeffrey; Goble, Stephen; Perrotto, Nicholas; Pinto, Shirly; Shen, Dong-Ming; Nargund, Ravi; Balkovec, James; DeVita, Robert J; Dreher, Spencer D

2017-05-11

Miniaturization and parallel processing play an important role in the evolution of many technologies. We demonstrate the application of miniaturized high-throughput experimentation methods to resolve synthetic chemistry challenges on the frontlines of a lead optimization effort to develop diacylglycerol acyltransferase (DGAT1) inhibitors. Reactions were performed on ∼1 mg scale using glass microvials providing a miniaturized high-throughput experimentation capability that was used to study a challenging S N Ar reaction. The availability of robust synthetic chemistry conditions discovered in these miniaturized investigations enabled the development of structure-activity relationships that ultimately led to the discovery of soluble, selective, and potent inhibitors of DGAT1.

Thermostabilization of the β1-adrenergic receptor correlates with increased entropy of the inactive state.

PubMed

Niesen, Michiel J M; Bhattacharya, Supriyo; Grisshammer, Reinhard; Tate, Christopher G; Vaidehi, Nagarajan

2013-06-20

The dynamic nature of GPCRs is a major hurdle in their purification and crystallization. Thermostabilization can facilitate GPCR structure determination, as has been shown by the structure of the thermostabilized β1-adrenergic receptor (β1AR) mutant, m23-β1AR, which has been thermostabilized in the inactive state. However, it is unclear from the structure how the six thermostabilizing mutations in m23-β1AR affect receptor dynamics. We have used molecular dynamics simulations in explicit solvent to compare the conformational ensembles for both wild type β1AR (wt-β1AR) and m23-β1AR. Thermostabilization results in an increase in the number of accessible microscopic conformational states within the inactive state ensemble, effectively increasing the side chain entropy of the inactive state at room temperature, while suppressing large-scale main chain conformational changes that lead to activation. We identified several diverse mechanisms of thermostabilization upon mutation. These include decrease of long-range correlated movement between residues in the G-protein coupling site to the extracellular region (Y227A(5.58), F338M(7.48)), formation of new hydrogen bonds (R68S), and reduction of local stress (Y227(5.58), F327(7.37), and F338(7.48)). This study provides insights into microscopic mechanisms underlying thermostability that leads to an understanding of the effect of these mutations on the structure of the receptor.

Hot climate inhibits volcanism on Venus: Constraints from rock deformation experiments and argon isotope geochemistry

NASA Astrophysics Data System (ADS)

Mikhail, Sami; Heap, Michael J.

2017-07-01

The disparate evolution of sibling planets Earth and Venus has left them markedly different. Venus' hot (460 °C) surface is dry and has a hypsometry with a very low standard deviation, whereas Earth's average temperature is 4 °C and the surface is wet and has a pronounced bimodal hypsometry. Counterintuitively, despite the hot Venusian climate, the rate of intraplate volcano formation is an order of magnitude lower than that of Earth. Here we compile and analyse rock deformation and atmospheric argon isotope data to offer an explanation for the relative contrast in volcanic flux between Earth and Venus. By collating high-temperature, high-pressure rock deformation data for basalt, we provide a failure mechanism map to assess the depth of the brittle-ductile transition (BDT). These data suggest that the Venusian BDT likely exists between 2 and 12 km depth (for a range of thermal gradients), in stark contrast to the BDT for Earth, which we find to be at a depth of ∼25-27 km using the same method. The implications for planetary evolution are twofold. First, downflexing and sagging will result in the sinking of high-relief structures, due to the low flexural rigidity of the predominantly ductile Venusian crust, offering an explanation for the curious coronae features on the Venusian surface. Second, magma delivery to the surface-the most efficient mechanism for which is flow along fractures (dykes; i.e., brittle deformation)-will be inhibited on Venus. Instead, we infer that magmas must stall and pond in the ductile Venusian crust. If true, a greater proportion of magmatism on Venus should result in intrusion rather than extrusion, relative to Earth. This predicted lower volcanic flux on Venus, relative to Earth, is supported by atmospheric argon isotope data: we argue here that the anomalously unradiogenic present-day atmospheric 40Ar/36Ar ratio for Venus (compared with Earth) must reflect major differences in 40Ar degassing, primarily driven by volcanism. Indeed, these argon data suggest that the volcanic flux on Venus has been three times lower than that on Earth over its 4.56 billion year history. We conclude that Venus' hot climate inhibits volcanism.

Correlation between oxygen stoichiometry, structure, and opto-electrical properties in amorphous In2O3:H films

NASA Astrophysics Data System (ADS)

Koida, Takashi; Shibata, Hajime; Kondo, Michio; Tsutsumi, Koichi; Sakaguchi, Akio; Suzuki, Michio; Fujiwara, Hiroyuki

2012-03-01

We have characterized amorphous In2O3:H (H : ˜4 at.%) transparent conducting films by Rutherford backscattering spectrometry (RBS), thermal desorption spectroscopy, spectroscopic ellipsometry, and Hall measurements. The amorphous In2O3:H films have been fabricated at room temperature by sputtering of an In2O3 ceramic target under Ar, O2, and H2O vapor with variation of a flow ratio r(O2) = O2/(O2+Ar). We observe (i) signals originating from Ar in RBS spectra for all the films and (ii) desorption of H2O and Ar gases during post thermal annealing of the films. Furthermore, O2 desorption together with H2O and Ar is observed for the films grown at r(O2) > 0.375%, whereas In desorption together with H2O and Ar is observed for the films grown at r(O2) < 0.375%. These results suggest that the films have void and/or multi-vacancy rich structures inside the amorphous network, and the variety of atoms, such as Ar, H2O, and weakly bonded O and In, is present in the void structures for the films grown at O2-rich and O2-poor conditions, respectively. Corresponding to the structural changes, optical and electrical properties also change at r(O2) = 0.375%. For the films grown at r(O2) < 0.375%, we observe a broad absorption in the visible wavelengths that cannot be explained by free carrier absorption. In this film, the carrier mobility reduces rapidly with increasing carrier density. Analysis of spectroscopic ellipsometry and Hall measurements reveals that a large decrease in mobility is due to a large increase in carrier effective mass, in addition to the effect of ionized impurity scattering. In this article, we discuss the optical and transport properties with the variation of oxygen stoichiometry and microscopic structures in the amorphous In2O3:H films.

Visualization of arrestin recruitment by a G Protein-Coupled Receptor

PubMed Central

Reis, Rosana I.; Huang, Li-Yin; Tripathi-Shukla, Prachi; Qian, Jiang; Li, Sheng; Blanc, Adi; Oleskie, Austin N.; Dosey, Anne M.; Su, Min; Liang, Cui-Rong; Gu, Ling-Ling; Shan, Jin-Ming; Chen, Xin; Hanna, Rachel; Choi, Minjung; Yao, Xiao Jie; Klink, Bjoern U.; Kahsai, Alem W.; Sidhu, Sachdev S.; Koide, Shohei; Penczek, Pawel A.; Kossiakoff, Anthony A.; Jr, Virgil L. Woods; Kobilka, Brian K.; Skiniotis, Georgios; Lefkowitz, Robert J.

2014-01-01

G Protein Coupled Receptors (GPCRs) are critically regulated by β-arrestins (βarrs), which not only desensitize G protein signaling but also initiate a G protein independent wave of signaling1-5. A recent surge of structural data on a number of GPCRs, including the β2 adrenergic receptor (β2AR)-G protein complex, has provided novel insights into the structural basis of receptor activation6-11. Lacking however has been complementary information on recruitment of βarrs to activated GPCRs primarily due to challenges in obtaining stable receptor-βarr complexes for structural studies. Here, we devised a strategy for forming and purifying a functional β2AR-βarr1 complex that allowed us to visualize its architecture by single particle negative stain electron microscopy (EM) and to characterize the interactions between β2AR and βarr1 using hydrogen-deuterium exchange mass spectrometry (HDXMS) and chemical cross-linking. EM 2D averages and 3D reconstructions reveal bimodal binding of βarr1 to the β2AR, involving two separate sets of interactions, one with the phosphorylated carboxy-terminus of the receptor and the other with its seven-transmembrane core. Areas of reduced HDX together with identification of cross-linked residues suggest engagement of the finger loop of βarr1 with the seven-transmembrane core of the receptor. In contrast, focal areas of increased HDX indicate regions of increased dynamics in both N and C domains of βarr1 when coupled to the β2AR. A molecular model of the β2AR-βarr signaling complex was made by docking activated βarr1 and β2AR crystal structures into the EM map densities with constraints provided by HDXMS and cross-linking, allowing us to obtain valuable insights into the overall architecture of a receptor-arrestin complex. The dynamic and structural information presented herein provides a framework for better understanding the basis of GPCR regulation by arrestins. PMID:25043026

Identification and structural characterization of O-beta-ribosyl-(1"----2')-adenosine-5"-phosphate in yeast methionine initiator tRNA.

PubMed Central

Keith, G; Glasser, A L; Desgrès, J; Kuo, K C; Gehrke, C W

1990-01-01

We report in this paper on the complete structure determination of the modified nucleotide A*, now called Ar(p), that was previously identified in yeast methionine initiator tRNA as an isomeric form of O-ribosyl-adenosine bearing an additional phosphoryl-monoester group on its ribose2 moiety. By using the chemical procedure of periodate oxidation and subsequent beta-elimination with cyclohexylamine on mono- and dinucleotides containing Ar(p), we characterized the location of the phosphate group on the C-5" of the ribose2 moiety, and the linkage between the two riboses as a (1"----2')-glycosidic bond. Since the structural difference between phosphatase treated Ar(p) and authentic O-alpha-ribosyl-(1"----2')-adenosine from poly(ADP-Ribose) was previously assigned to an isomeric difference in the ribose2-ribose1 linkage, the (1"----2')-glycosidic bond of Ar(p) was deduced to have a beta-spatial configuration. Thus, final chemical structure for Ar(p) at the position 64 in yeast initiator tRNA(Met) has been established as O-beta-ribosyl-(1"----2')-adenosine-5"-phosphate. This nucleotide is linked by a 3',5'-phosphodiester bond to G at the position 65. PMID:2235481

An examination of energy transfers and kinetic mechanisms in argon and in an argon-hydrogen medium excited by an electron beam Application in research on new lasers

NASA Astrophysics Data System (ADS)

Puech, V.

Experimental results on a Ar-H laser pumped by an electron gun are presented, along with a kinetic model of the evolution of states in Ar lasers with additives. Data from trials with the Ar-H laser are provided to confirm model predictions of the electron energy transfer. The electron densities and temperatures evolving on a nanosecond scale in the laser are quantified. A solution is found for the Boltzmann equation for the collisional processes characterizing the electron distribution of interactions between the pumping electrons and the various excited molecular states. The electron distribution function is assumed to be Maxwellian, and the distribution is shown to converge within a few picoseconds when the excitation is above the ionization energy.

Targeting the androgen receptor pathway in castration-resistant prostate cancer: progresses and prospects

PubMed Central

Ferraldeschi, R; Welti, J; Luo, J; Attard, G; de Bono, JS

2015-01-01

Androgen receptor (AR) signaling is a critical pathway for prostate cancer cells, and androgen-deprivation therapy (ADT) remains the principal treatment for patients with locally advanced and metastatic disease. However, over time, most tumors become resistant to ADT. The view of castration-resistant prostate cancer (CRPC) has changed dramatically in the last several years. Progress in understanding the disease biology and mechanisms of castration resistance led to significant advancements and to paradigm shift in the treatment. Accumulating evidence showed that prostate cancers develop adaptive mechanisms for maintaining AR signaling to allow for survival and further evolution. The aim of this review is to summarize molecular mechanisms of castration resistance and provide an update in the development of novel agents and strategies to more effectively target the AR signaling pathway. PMID:24837363

What can blueschists tell about the Deep? High Pressure in the Anatolide - Taurid Belt

NASA Astrophysics Data System (ADS)

Oberhaensli, R.

2011-12-01

High-pressure metamorphic terranes in the Anatolide - Taurid belt document the complex distribution of paleo-sutures in the Tethyan realm. Field based petrologic studies of metapelites in the Anatolide-Taurid realm allow to trace HP-LT metamorphism not only in the well known ophiolitic Tavsanli Zone (2.4 GPa/500 °C) but also in the Afyon Zone (0.9 GPa/350 °C), the Menderes Massif (1.2 Gpa/500 °C;) and in the Lycian Nappes (1.0 Gpa/400 °C) - all situated north of the so called Taurid Platform. While the HP metamorphism is dated to 90-80 Ma (Rb/Sr; Ar/Ar) in the Tavsanli Zone, it ranges from 60-70 Ma (Ar/Ar) in the Afyon Zone and its tectonic equivalent, the Lycian Nappes. The Afyon Zone s.l. is closely related to the glaucophane- lawsonite-bearing rocks of the Tavsanli Zone and its eastward extension. Blueschist-facies metamorphism is documented by Fe,Mg-carpholite in regionally distributed metapelites and glaucophane in sparse mafic rocks (Afyon, Menderes, Lycia). Since observations of HP are based on Fe,Mg-carpholite bearing metasediments and not on mafic blueschists new thermodynamic data and petrologic modelling was elaborated to match P-T data and field-based observations. Moreover, newly formed phengitic mica allows precise dating. Both, Tavsanli and Afyon Zones can be followed along strike over more than 600 km and around the southern edge of the Central Anatolian Crystalline Complex. The two zones are situated north of the Taurid Platform and correlate with the Amasia Zone in Armenia. To the extreme East the Bitlis Complex underwent a LT - HP metamorphic blueschist evolution (1,1 GPa/ 350 °C; glaucophane, Fe,Mg-carpholite) in its sedimentary cover while the basement is eclogitic. Depending on the structural position and mineral association of phengitic mica metamorphic ages of the Bitlis blueschists scatter around 70-80 Ma. Eclogites from the basement are slightly older. These LT-HP units cannot be correlated with the Tavsanli - Afyon blueschist belts since they occur south of the Taurid Platform. Thus the Bitlis Complex represents a terrane detached from the Arabian Platform that subsequently collided with the Taurus Platform during closure of the Neo-Tethys. In SW Anatolia, south of the Taurus Platform, the Alanya Zone documents a Late Cretaceous HP evolution with blueschists and eclogites. Together with the Bitlis Complex the two Late Cretaceous HP-LT regions represent a suture south of the Taurid Platform but still north of the Hatay - Güleyman - Zagros ophiolites separating the Arabian Platform from the Anatolide-Taurid realm. The dissection of the Anatolide-Taurid realm into several paleo-subduction zones of Late Cretaceous age impacts on the lithospheric structure and has consequences for the Tertiary plateau formation in Central and Eastern Anatolia. Geophysical data and observations from the East Anatolian Plateau can be explained with petrologic modelling when hydration of the lithospheric lids above subduction zones is considered.

Evolution Of An Upper Crustal Plutonic-Volcanic Plumbing System:Insights From High Precision U-Pb Zircon Geochronology Of Intracaldera Tuff And Intrusions In Silver Creek Caldera, Arizona, USA

NASA Astrophysics Data System (ADS)

Zhang, T.; Mundil, R.; Miller, C. F.; Miller, J. S.; Paterson, S. R.

2010-12-01

Study of both plutonic and volcanic regimes in one single magmatic system is a powerful approach towards obtaining a more complete view of the long-term evolution of magma systems. The recently discovered Silver Creek caldera is the source of the voluminous Peach Spring Tuff (PST) (Ferguson, 2008) and presents a unique opportunity to study a field laboratory of a linked plutonic-volcanic system. This relict west-facing half caldera is predominantly filled with trachytic intracaldera tuff with the caldera margin intruded by several petrologically distinct hypabyssal intrusions. These include porphyritic granite with granophyric texture, felsic leucogranite, porphyritic monzonite exposed on NE side of the caldera that is zoned from more felsic to more mafic, and quartz-phyric dikes that intrude the caldera fill. We present preliminary single zircon ages from 4 samples that have been analyzed using the CA-TIMS method after thermal annealing and chemical leaching (Mattinson 2005), including 1 sample from intracaldera tuff and 3 samples from caldera-related intrusions. 3-D total U/Pb isochron ages from all four samples fall within a range of 18.32-18.90 Ma with uncertainties between 0.09 and 0.39 Ma, although some of them lack precision and are compromised by elevated common Pb. For example, zircon from the dated porphyritic monzonite yields an age of 18.32±0.42 Ma (MSWD=2.7) where the excess scatter may result from real age dispersion and/or different compositions of the common Pb contribution. The PST had been dated to ~18.5 Ma by 40Ar/39Ar techniques (Nielson et al., 1990). In order to be compared to U/Pb ages the 40Ar/39Ar age must be adjusted for a revised age for the then used flux monitor (MMbh-1) and corrected for the now quantified systematic bias between 40Ar/39Ar and U/Pb ages (Renne et al., 2010), which results in a corrected age of 18.8 Ma. Thus, the ages for our samples match that of the PST within error. Based on current results, the age difference between the different phases of the intrusion is very small and the ages of the intrusion match within errors the age of the PST. This tight time range indicates that the super-eruption and the subsequent reactivation of the caldera by hypabyssal intrusions happened on a much shorter timescale than the evolution of large magma systems that have been described with durations of up to 10 m.y. Additional geochronology in combination with geochemical and AMS analyses are aimed at a more detailed reconstruction of the emplacement and eruption history of this plutonic-volcanic system.

The inverse problem of argon diffusion from minerals: Determination of kinetic parameters from stepwise-heating experiments

USGS Publications Warehouse

Brandt, Stephen B.; Rasskazov, S.V.; Brandt, I.S.; Ivanov, A.V.; Kunk, Michael J.

1997-01-01

Results of two routine 40Ar/39Ar stepwise heating experiments on a biotite and a basanite are interpreted in terms of Fick's and Arrhenius' laws. Both patterns represent a saddle-shaped 39Ar release. Argon isotope spectra are suggested to be controlled by the activation energy of diffusion E and the frequency factor D(o). The activation energy of 39Ar is lower than the one of 40Ar. This results in a preferable release of 40Ar relatively to 39Ar at high-temperature steps and an increasing high-temperature wing in the saddle-shaped age spectrum. At low temperatures, considerable losses and irregularities in release of mainly 39Ar are observed, which cause the decreasing low-temperature wing in the 'saddle'. The suggestion of argon losses (mainly of 39Ar) from a loose, 'unstable' zone of the mineral structures becomes justified. The n-irradiation of the samples and the shift of E of 39Ar towards lower values seems to explain the saddle-shaped age-spectra often encountered in 40Ar/39Ar-geochronometry.

Enduring Rivalry in the Philippines and the Application of Amnesty, Reintegration and Reconciliation (AR2)

DTIC Science & Technology

2008-05-22

equilibrium is a theory in paleobiology introduced by Steven Jay Gould and Niles Elderage in 1972 as an alternative to Darwin’s relatively smooth...Equilibria: The Tempo and Mode of Evolution Reconsidered," Paleobiology 3, no. 2 (1972). 3 Stephen Krasner, "Approaches to the State: Alternative...34Punctuated Equilibria: The Tempo and Mode of Evolution Reconsidered." Paleobiology 3, no. 2 (1972): 37. Ferrer, Miriam Coronel. "Philippines National

Two Types of Long-duration Quasi-static Evolution of Solar Filaments

NASA Astrophysics Data System (ADS)

Xing, C.; Li, H. C.; Jiang, B.; Cheng, X.; Ding, M. D.

2018-04-01

In this Letter, we investigate the long-duration quasi-static evolution of 12 pre-eruptive filaments (four active region (AR) and eight quiescent filaments), mainly focusing on the evolution of the filament height in 3D and the decay index of the background magnetic field. The filament height in 3D is derived through two-perspective observations of Solar Dynamics Observatory (SDO) and Solar TErrestrial RElations Observatory (STEREO). The coronal magnetic field is reconstructed using the potential field source surface model. A new finding is that the filaments we studied show two types of long-duration evolution: one type comprises a long-duration static phase and a short, slow rise phase with a duration of less than 12 hr and a speed of 0.1–0.7 km s‑1, while the other one only presents a slow rise phase but with an extremely long duration of more than 60 hr and a smaller speed of 0.01–0.2 km s‑1. At the moment approaching the eruption, the decay index of the background magnetic field at the filament height is similar for both AR and quiescent filaments. The average value and upper limit are ∼0.9 and ∼1.4, close to the critical index of torus instability. Moreover, the filament height and background magnetic field strength are also found to be linearly and exponentially related with the filament length, respectively.

Structural effects due to the incorporation of Ar atoms in the lattice of ZrO 2 thin films prepared by ion beam assisted deposition

NASA Astrophysics Data System (ADS)

Holgado, J. P.; Escobar Galindo, R.; van Veen, A.; Schut, H.; de Hosson, J. Th. M.; González-Elipe, A. R.

2002-09-01

Two sets of ZrO 2 thin films have been prepared at room temperature by ion beam induced chemical vapour deposition and subsequently annealed up to 1323 K. The two sets of samples have been prepared by using either O 2+ or mixtures of (O 2++Ar +) ions for the decomposition of a volatile metallorganic precursor of zirconium. The structure and microstructure of these two sets of samples have been determined by means of X-ray diffraction, Fourier transform infrared spectroscopy and positron beam analysis (PBA). The samples were very compact and dense and had a very low-surface roughness. After annealing in air at T⩾573 K both sets of films were transparent and showed similar refraction indexes. For the (O 2++Ar +)-ZrO 2 thin films it is shown by X-ray photoelectron spectroscopy and Rutherford back scattering that a certain amount of incorporated Ar (5-6 at.%) remains incorporated within the oxide lattice. No changes were detected in the amount of incorporated Ar even after annealing at T=773 K. For higher annealing temperatures ( T>1073 K), the amount of Ar starts to decrease, and at T=1223 K only residual amounts of Ar (<0.4%) remain within the lattice. It has been found that as far as Ar atoms remain incorporated within the ZrO 2 network, the (O 2+-Ar +)-ZrO 2 films present a cubic/tetragonal phase. When the amount of "embedded" Ar decreases, the crystalline phase reverts to monoclinic, the majority phase observed for the (O 2+)-ZrO 2 films after any annealing treatments. The microstructure of the films after different annealing treatments has been investigated by PBA. The presence of Ar ions and the initial amorphous state of the layers were detected by this technique. An increase of the open volume was observed after annealing up to 773 K in both sets of samples. For higher annealing temperatures the samples showed a progressive crystallisation resulting in a decrease of the open volume. During this sintering the samples without embedded Ar present a higher concentration of open volume defects. After the release of Ar occurs ( T⩾1223 K) both samples approach to a similar defect free state. The incorporation of Ar within the ZrO 2 thin film structure, is proposed as the main factor contributing to the stabilisation of the cubic/tetragonal phase of ZrO 2 at room temperature.

Tracking the timing of subduction and exhumation using 40Ar/39Ar phengite ages in blueschist- and eclogite-facies rocks (Sivrihisar, Turkey)

USGS Publications Warehouse

Fornash, Katherine F.; Cosca, Michael A.; Whitney, Donna L.

2016-01-01

Geochronologic studies of high-pressure/low-temperature rocks can be used to determine the timing and rates of burial and exhumation in subduction zones by dating different stages of the pressure–temperature history. In this study, we present new in situ UV laser ablation 40Ar/39Ar phengite ages from a suite of lawsonite blueschist- and eclogite-facies rocks representing different protoliths (metabasalt, metasediment), different structural levels (within and outside of a high-strain zone), and different textural positions (eclogite pod core vs. margin) to understand the timing of these events in an exhumed Neo-Tethyan subduction zone (Sivrihisar Massif, Tavşanlı Zone, Turkey). Weighted mean in situ 40Ar/39Ar ages of phengite from the cores of lawsonite eclogite pods (90–93 Ma) are distinctly older than phengite from retrogressed, epidote eclogite (82 ± 2 Ma). These ages are interpreted as the age of peak and retrograde metamorphism, respectively. Eclogite records the narrowest range of ages (10–14 m.y.) of any rock type analyzed. Transitional eclogite- and blueschist-facies assemblages and glaucophane-rimmed lawsonite + garnet + phengite veins from eclogite pod margins record a much wider age range of 40Ar/39Ar ages (~20 m.y.) with weighted mean ages of ~91 Ma. Blueschists and quartzites record more variable 40Ar/39Ar ages that may in part be related to structural position: samples within a high-strain zone at the tectonic contact of the HP rocks with a meta-ultramafic unit have in situ UV laser ablation 40Ar/39Ar ages of 84.0 ± 1.3–103.7 ± 3.1 Ma, whereas samples outside this zone range to older ages (84.6 ± 2.4–116.7 ± 2.7 Ma) and record a greater age range (22–38 m.y.). The phengite ages can be correlated with the preservation of HP mineral assemblages and fabrics as well as the effects of deformation. Collectively, these results show that high-spatial resolution UV laser ablation 40Ar/39Ar phengite data, when considered in a petrologic and structural context, may document prograde (burial) and retrograde (exhumation) stages of subduction metamorphism.

Augmented reality technology for preoperative planning and intraoperative navigation during hepatobiliary surgery: A review of current methods.

PubMed

Tang, Rui; Ma, Long-Fei; Rong, Zhi-Xia; Li, Mo-Dan; Zeng, Jian-Ping; Wang, Xue-Dong; Liao, Hong-En; Dong, Jia-Hong

2018-04-01

Augmented reality (AR) technology is used to reconstruct three-dimensional (3D) images of hepatic and biliary structures from computed tomography and magnetic resonance imaging data, and to superimpose the virtual images onto a view of the surgical field. In liver surgery, these superimposed virtual images help the surgeon to visualize intrahepatic structures and therefore, to operate precisely and to improve clinical outcomes. The keywords "augmented reality", "liver", "laparoscopic" and "hepatectomy" were used for searching publications in the PubMed database. The primary source of literatures was from peer-reviewed journals up to December 2016. Additional articles were identified by manual search of references found in the key articles. In general, AR technology mainly includes 3D reconstruction, display, registration as well as tracking techniques and has recently been adopted gradually for liver surgeries including laparoscopy and laparotomy with video-based AR assisted laparoscopic resection as the main technical application. By applying AR technology, blood vessels and tumor structures in the liver can be displayed during surgery, which permits precise navigation during complex surgical procedures. Liver transformation and registration errors during surgery were the main factors that limit the application of AR technology. With recent advances, AR technologies have the potential to improve hepatobiliary surgical procedures. However, additional clinical studies will be required to evaluate AR as a tool for reducing postoperative morbidity and mortality and for the improvement of long-term clinical outcomes. Future research is needed in the fusion of multiple imaging modalities, improving biomechanical liver modeling, and enhancing image data processing and tracking technologies to increase the accuracy of current AR methods. Copyright © 2018 First Affiliated Hospital, Zhejiang University School of Medicine in China. Published by Elsevier B.V. All rights reserved.

Evolution of a behavior-linked microsatellite-containing element in the 5' flanking region of the primate AVPR1A gene

PubMed Central

2008-01-01

Background The arginine vasopressin V1a receptor (V1aR) modulates social cognition and behavior in a wide variety of species. Variation in a repetitive microsatellite element in the 5' flanking region of the V1aR gene (AVPR1A) in rodents has been associated with variation in brain V1aR expression and in social behavior. In humans, the 5' flanking region of AVPR1A contains a tandem duplication of two ~350 bp, microsatellite-containing elements located approximately 3.5 kb upstream of the transcription start site. The first block, referred to as DupA, contains a polymorphic (GT)25 microsatellite; the second block, DupB, has a complex (CT)4-(TT)-(CT)8-(GT)24 polymorphic motif, known as RS3. Polymorphisms in RS3 have been associated with variation in sociobehavioral traits in humans, including autism spectrum disorders. Thus, evolution of these regions may have contributed to variation in social behavior in primates. We examined the structure of these regions in six ape, six monkey, and one prosimian species. Results Both tandem repeat blocks are present upstream of the AVPR1A coding region in five of the ape species we investigated, while monkeys have only one copy of this region. As in humans, the microsatellites within DupA and DupB are polymorphic in many primate species. Furthermore, both single (lacking DupB) and duplicated alleles (containing both DupA and DupB) are present in chimpanzee (Pan troglodytes) populations with allele frequencies of 0.795 and 0.205 for the single and duplicated alleles, respectively, based on the analysis of 47 wild-caught individuals. Finally, a phylogenetic reconstruction suggests two alternate evolutionary histories for this locus. Conclusion There is no obvious relationship between the presence of the RS3 duplication and social organization in primates. However, polymorphisms identified in some species may be useful in future genetic association studies. In particular, the presence of both single and duplicated alleles in chimpanzees provides a unique opportunity to assess the functional role of this duplication in contributing to variation in social behavior in primates. While our initial studies show no signs of directional selection on this locus in chimps, pharmacological and genetic association studies support a potential role for this region in influencing V1aR expression and social behavior. PMID:18573213

Evolution of a behavior-linked microsatellite-containing element in the 5' flanking region of the primate AVPR1A gene.

PubMed

Donaldson, Zoe R; Kondrashov, Fyodor A; Putnam, Andrea; Bai, Yaohui; Stoinski, Tara L; Hammock, Elizabeth A D; Young, Larry J

2008-06-23

The arginine vasopressin V1a receptor (V1aR) modulates social cognition and behavior in a wide variety of species. Variation in a repetitive microsatellite element in the 5' flanking region of the V1aR gene (AVPR1A) in rodents has been associated with variation in brain V1aR expression and in social behavior. In humans, the 5' flanking region of AVPR1A contains a tandem duplication of two approximately 350 bp, microsatellite-containing elements located approximately 3.5 kb upstream of the transcription start site. The first block, referred to as DupA, contains a polymorphic (GT)25 microsatellite; the second block, DupB, has a complex (CT)4-(TT)-(CT)8-(GT)24 polymorphic motif, known as RS3. Polymorphisms in RS3 have been associated with variation in sociobehavioral traits in humans, including autism spectrum disorders. Thus, evolution of these regions may have contributed to variation in social behavior in primates. We examined the structure of these regions in six ape, six monkey, and one prosimian species. Both tandem repeat blocks are present upstream of the AVPR1A coding region in five of the ape species we investigated, while monkeys have only one copy of this region. As in humans, the microsatellites within DupA and DupB are polymorphic in many primate species. Furthermore, both single (lacking DupB) and duplicated alleles (containing both DupA and DupB) are present in chimpanzee (Pan troglodytes) populations with allele frequencies of 0.795 and 0.205 for the single and duplicated alleles, respectively, based on the analysis of 47 wild-caught individuals. Finally, a phylogenetic reconstruction suggests two alternate evolutionary histories for this locus. There is no obvious relationship between the presence of the RS3 duplication and social organization in primates. However, polymorphisms identified in some species may be useful in future genetic association studies. In particular, the presence of both single and duplicated alleles in chimpanzees provides a unique opportunity to assess the functional role of this duplication in contributing to variation in social behavior in primates. While our initial studies show no signs of directional selection on this locus in chimps, pharmacological and genetic association studies support a potential role for this region in influencing V1aR expression and social behavior.

500 keV Ar2+ ion irradiation induced anatase to brookite phase transformation and ferromagnetism at room temperature in TiO2 thin films

NASA Astrophysics Data System (ADS)

Bharati, B.; Mishra, N. C.; Kanjilal, D.; Rath, Chandana

2018-01-01

In our earlier report, where we have demonstrated ferromagnetic behavior at room temperature (RT) in TiO2 thin films deposited through electron beam evaporation technique followed by annealing either in Ar or O2 atmosphere [Mohanty et al., Journal of Magnetism and Magnetic Materials 355 (2014) 240-245], here we have studied the evolution of structure and magnetic properties after irradiating the TiO2 thin films with 500 keV Ar2+ ions. The pristine film while exhibits anatase phase, the films become amorphous after irradiating at fluence in the range 1 × 1014 to 1 × 1016 ions/cm2. Increasing the fluence up to 5 × 1016 ions/cm2, amorphous to crystalline phase transformation occurs and the structure becomes brookite. Although anatase to rutile phase transformation is usually reported in literatures, anatase to brookite phase transformation is an unusual feature which we have reported here for the first time. Such anatase to brookite phase transformation is accompanied with grain growth without showing any change in film thickness evidenced from Rutherford's Back Scattering (RBS) measurement. From scanning probe micrographs (SPM), roughness is found to be more in amorphous films than in the crystalline ones. Anatase to brookite phase transformation could be realized by considering the importance of intermediate amorphous phase. Because due to amorphous phase, heat deposited by energetic ions are localized as dissipation of heat is less and as a result, the localized region crystallizes in brookite phase followed by grain growth as observed in highest fluence. Further, we have demonstrated ferromagnetic behavior at RT in irradiated films similar to pristine one, irrespective of their phase and crystallinity. Origin for room temperature ferromagnetism (RTFM) is attributed to the presence of oxygen vacancies which is confirmed by carrying out XPS measurement.

Improvement in plasma illumination properties of ultrananocrystalline diamond films by grain boundary engineering

NASA Astrophysics Data System (ADS)

Sankaran, K. J.; Srinivasu, K.; Chen, H. C.; Dong, C. L.; Leou, K. C.; Lee, C. Y.; Tai, N. H.; Lin, I. N.

2013-08-01

Microstructural evolution of ultrananocrystalline diamond (UNCD) films as a function of substrate temperature (TS) and/or by introducing H2 in Ar/CH4 plasma is investigated. Variation of the sp2 and sp3 carbon content is analyzed using UV-Raman and near-edge X-ray absorption fine structure spectra. Morphological and microstructural studies confirm that films deposited using Ar/CH4 plasma at low TS consist of a random distribution of spherically shaped ultra-nano diamond grains with distinct sp2-bonded grain boundaries, which are attributed to the adherence of CH radicals to the nano-sized diamond clusters. By increasing TS, adhering efficiency of CH radicals to the diamond lattice drops and trans-polyacetylene (t-PA) encapsulating the nano-sized diamond grains break, whereas the addition of 1.5% H2 in Ar/CH4 plasma at low TS induces atomic hydrogen that preferentially etches out the t-PA attached to ultra-nano diamond grains. Both cases make the sp3-diamond phase less passivated. This leads to C2 radicals attaching to the diamond lattice promoting elongated clustered grains along with a complicated defect structure. Such a grain growth model is highly correlated to explain the technologically important functional property, namely, plasma illumination (PI) of UNCD films. Superior PI properties, viz. low threshold field of 0.21 V/μm with a high PI current density of 4.10 mA/cm2 (at an applied field of 0.25 V/μm) and high γ-coefficient (0.2604) are observed for the UNCD films possessing ultra-nano grains with a large fraction of grain boundary phases. The grain boundary component consists of a large amount of sp2-carbon phases that possibly form interconnected paths for facilitating the transport of electrons and the electron field emission process that markedly enhance PI properties.

Characterization of Ascochyta rabiei for population structure, mating type and pathogenic variability from Pakistan and United States

USDA-ARS?s Scientific Manuscript database

Chickpea production is greatly hampered by blight causing fungal pathogen Ascochyta rabiei (AR) in chickpea growing regions of the world. Genetic variability and mating type frequency of thirty-two AR isolates from six geographical regions of Pakistan were compared with a US-AR population. Pakistani...

Mentoring Graduate Students through the Action Research Journey Using Guiding Principles

ERIC Educational Resources Information Center

Spencer, Joi A.; Molina, Sarina Chugani

2018-01-01

Our department has adopted action research (AR) projects as the culminating task for our master's degree candidates. This article presents our work on mentoring graduate students towards the completion of their final AR research projects and details the deliberate structures put in place to guide them through the AR process. These structures…

Structural characterization of framework–gas interactions in the metal–organic framework Co2(dobdc) by in situ single-crystal X-ray diffraction† †Electronic supplementary information (ESI) available: Supplementary figures, crystallographic information, adsorption isotherms and fits, CCDC 1530119–1530126. For ESI and crystallographic data in CIF or other electronic format. See DOI: 10.1039/c7sc00449d Click here for additional data file. Click here for additional data file.

PubMed Central

Gonzalez, Miguel I.; Mason, Jarad A.; Bloch, Eric D.; Teat, Simon J.; Gagnon, Kevin J.; Morrison, Gregory Y.; Queen, Wendy L.

2017-01-01

The crystallographic characterization of framework–guest interactions in metal–organic frameworks allows the location of guest binding sites and provides meaningful information on the nature of these interactions, enabling the correlation of structure with adsorption behavior. Here, techniques developed for in situ single-crystal X-ray diffraction experiments on porous crystals have enabled the direct observation of CO, CH4, N2, O2, Ar, and P4 adsorption in Co2(dobdc) (dobdc4– = 2,5-dioxido-1,4-benzenedicarboxylate), a metal–organic framework bearing coordinatively unsaturated cobalt(ii) sites. All these molecules exhibit such weak interactions with the high-spin cobalt(ii) sites in the framework that no analogous molecular structures exist, demonstrating the utility of metal–organic frameworks as crystalline matrices for the isolation and structural determination of unstable species. Notably, the Co–CH4 and Co–Ar interactions observed in Co2(dobdc) represent, to the best of our knowledge, the first single-crystal structure determination of a metal–CH4 interaction and the first crystallographically characterized metal–Ar interaction. Analysis of low-pressure gas adsorption isotherms confirms that these gases exhibit mainly physisorptive interactions with the cobalt(ii) sites in Co2(dobdc), with differential enthalpies of adsorption as weak as –17(1) kJ mol–1 (for Ar). Moreover, the structures of Co2(dobdc)·3.8N2, Co2(dobdc)·5.9O2, and Co2(dobdc)·2.0Ar reveal the location of secondary (N2, O2, and Ar) and tertiary (O2) binding sites in Co2(dobdc), while high-pressure CO2, CO, CH4, N2, and Ar adsorption isotherms show that these binding sites become more relevant at elevated pressures. PMID:28966783

Preliminary Ar-40/Ar-39 age spectrum and laser probe dating of the M1 core of the Manson Impact Structure, Iowa: A K-T boundary crater candidate

NASA Technical Reports Server (NTRS)

Kunk, M. J.; Snee, L. W.; French, B. M.; Harlan, S. S.; Mcgee, J. J.

1993-01-01

Preliminary Ar-40/Ar-39 age spectrum and laser probe dating results from new drill core from the 35-km-diameter Manson Impact Structure (MIS), Iowa indicates a reasonable possibility that the MIS is a Cretaceous-Tertiary (K-T) boundary impact event. Several different types of samples from a melt-matrix breccia, a unit of apparent crater fill intersected by the M1 core, were analyzed. Ar-40/Ar-39 results from these samples indicate a maximum age for the MIS of about 65.4 plus or minus 0.4(2 sigma) Ma. Petrographic analyses of the samples indicate a high probability that all the dated samples from the melt-matrix breccia contain relict grains that were not entirely melted or degassed at the time of impact, suggesting that the actual age of the MIS could be somewhat younger than our preliminary results indicate. The results are consistent with a previously published age estimate of shocked microcline from the MIS central uplift of 65.7 plus or minus 1.0 Ma.

Simulations of the Evolution of Vapor Ejected by the LCROSS Impact on the Moon

NASA Astrophysics Data System (ADS)

Hurley, D. M.; Killen, R. M.; Team, L.; Potter, A. E.

2009-12-01

We present simulations of the vapor plume evolution resulting from the LCROSS impact onto the Moon. The simulation employs the Monte Carlo technique to follow the trajectory of particles assuming a collisionless atmosphere from the time the particle reaches the collisionless regime until the particle is lost from the Moon. We use realistic topography and examine how different implementation of physics within the model affect the evolution of the vapor plume. We simulate Na, H2O, OH, H, O, and Ar. If observations from LAMP and ground-based observations of Na are successful (they are TBD at the time of writing the abstract), we present the observations and use the model to interpret them. LAMP is the Lyman Alpha Mapping Project onboard Lunar Reconnaissance Orbiter. After impact, LAMP will observe FUV spectra in search of H and Ar in the atmosphere. We propose to use the McMath-Pierce Main to observe the impact plume, which is scheduled to occur on October 9, 2009 at 11:30 UT (7:30 a.m. EDT, 4:30 a.m. PDT), +/- 30 minutes. The spectrum of the impact plume will be measured using the Stellar Spectrograph and the McMath-Pierce Main telescope. The spectral range will be chosen to observed sodium. The purpose of this observation is to calibrate the impact. We know the sodium content of the regolith. A measure of the extra sodium content in the impact plume will serve to calibrate the impact. We will observe the impact region with the East Auxillary Telescope in white light to estimate the amount of dust produced by the impact. Distribution of simulated Ar particles 2 hours after the LCROSS impact.

Detecting signatures of cosmological recombination and reionization in the cosmic radio background

NASA Astrophysics Data System (ADS)

Subrahmanyan, Ravi; Shankar Narayana Rao, Udaya; Sathyanarayana Rao, Mayuri; Singh, Saurabh

2015-08-01

Evolution of the baryons during the Epochs of cosmological Recombination and Reionization has left traces in the cosmic radio background in the form of spectral distortions (Sunyaev & Chluba 2008 Astron. Nachrichten, 330, 657; Pritchard & Loeb 2012 Rep Prog Phys 75(8):086901). The spectral signature depends on the evolution in the ionization state in hydrogen and helium and on the spin temperature of hydrogen. These probe the physics of energy release beyond the last scattering surface at redshifts exceeding 1090 and the nature of the first sources and gas evolution down to redshift about 6. The spectral distortions are sensitive to the nature of the first stars, ultra-dwarf galaxies, accreting compact objects, and the evolving ambient radiation field: X-rays and UV from the first sources. Detection of the all-sky or global spectral distortions in the radio background is hence a probe of cosmological recombination and reionization.We present new spectral radiometers that we have purpose designed for precision measurements of spectral distortions at radio wavelengths. New antenna elements include frequency independent and electrically small fat-dipole (Raghunathan et al. 2013 IEEE TAP, 61, 3411) and monopole designs. Receiver configurations have been devised that are self-calibratable (Patra et al. 2013 Expt Astron, 36, 319) so that switching of signal paths and of calibration noise sources provide real time calibration for systematics and receiver noise. Observing strategies (Patra et al. arXiv:1412.7762) and analysis methods (Satyanarayana Rao et al. arXiv:1501.07191) have been evolved that are capable of discriminating between the cosmological signals and the substantially brighter foregrounds. We have also demonstrated the value of system designs that exploit advantages of interferometer detection (Mahesh et al. arXiv:1406.2585) of global spectral distortions.Finally we discuss how the Square Kilometer Array stations may be outfitted with precision spectral radiometer outriggers (Subrahmanyan et al. arXiv:1501.04340) to provide the zero-spacing measurement sets, complement the interferometer visibilities and give the SKA a capability for measurements of cosmic radio background spectral distortions.

Experimental and computational study of complex shockwave dynamics in laser ablation plumes in argon atmosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harilal, S. S.; Miloshevsky, G. V.; Diwakar, P. K.

2012-08-15

We investigated spatio-temporal evolution of ns laser ablation plumes at atmospheric pressure, a favored condition for laser-induced breakdown spectroscopy and laser-ablation inductively coupled plasma mass-spectrometry. The 1064 nm, 6 ns pulses from a Nd:YAG laser were focused on to an Al target and the generated plasma was allowed to expand in 1 atm Ar. The hydrodynamic expansion features were studied using focused shadowgraphy and gated 2 ns self-emission visible imaging. Shadowgram images showed material ejection and generation of shock fronts. A secondary shock is observed behind the primary shock during the time window of 100-500 ns with instabilities near themore » laser cone angle. By comparing the self-emission images obtained using fast photography, it is concluded that the secondary shocks observed in the shadowgraphy were generated by fast moving target material. The plume front estimates using fast photography exhibited reasonable agreement with data obtained from shadowgraphy at early times {<=}400 ns. However, at later times, fast photography images showed plume confinement while the shadowgraphic images showed propagation of the plume front even at greater times. The structure and dynamics of the plume obtained from optical diagnostic tools were compared to numerical simulations. We have shown that the main features of plume expansion in ambient Ar observed in the experiments can be reproduced using a continuum hydrodynamics model which provided valuable insight into the expansion dynamics and shock structure of the plasma plume.« less

Modifying exchange bias effects of Mn/NiFe bilayers by in-situ Ar+ bombardment

NASA Astrophysics Data System (ADS)

Causer, G. L.; Manna, P. K.; Chiu, C.-C.; van Lierop, J.; Ionescu, M.; Lin, K.-W.; Klose, F.

2017-10-01

In this work, we present a procedure to modify the exchange bias (EB) properties of antiferromagnetic Mn/ferromagnetic NiFe bilayers by in-situ low energy Ar+ bombardment of the Mn layer during sample deposition. We present structural and magnetic results for unassisted and Ar+ assisted Mn/NiFe bilayers. X-ray diffraction, transmission electron microscopy and electron diffraction results establish different preferred Mn orientation directions between the two samples as a result of the Ar+ bombardment process. Hysteresis loops taken over several temperatures reveal that samples assisted with Ar+ ions during the Mn layer deposition had suppressed EB properties at low temperature as compared to samples grown without Ar+ assistance.

Sunspot Light Walls Suppressed by Nearby Brightenings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Shuhong; Zhang, Jun; Hou, Yijun

Light walls, as ensembles of oscillating bright structures rooted in sunspot light bridges, have not been well studied, although they are important for understanding sunspot properties. Using the Interface Region Imaging Spectrograph and Solar Dynamics Observatory observations, here we study the evolution of two oscillating light walls each within its own active region (AR). The emission of each light wall decays greatly after the appearance of adjacent brightenings. For the first light wall, rooted within AR 12565, the average height, amplitude, and oscillation period significantly decrease from 3.5 Mm, 1.7 Mm, and 8.5 minutes to 1.6 Mm, 0.4 Mm, andmore » 3.0 minutes, respectively. For the second light wall, rooted within AR 12597, the mean height, amplitude, and oscillation period of the light wall decrease from 2.1 Mm, 0.5 Mm, and 3.0 minutes to 1.5 Mm, 0.2 Mm, and 2.1 minutes, respectively. Particularly, a part of the second light wall even becomes invisible after the influence of a nearby brightening. These results reveal that the light walls are suppressed by nearby brightenings. Considering the complex magnetic topology in light bridges, we conjecture that the fading of light walls may be caused by a drop in the magnetic pressure, where the flux is canceled by magnetic reconnection at the site of the nearby brightening. Another hypothesis is that the wall fading is due to the suppression of driver source ( p -mode oscillation), resulting from the nearby avalanche of downward particles along reconnected brightening loops.« less

Prospecting for Novel Plant-Derived Molecules of Rauvolfia serpentina as Inhibitors of Aldose Reductase, a Potent Drug Target for Diabetes and Its Complications

PubMed Central

Pathania, Shivalika; Randhawa, Vinay; Bagler, Ganesh

2013-01-01

Aldose Reductase (AR) is implicated in the development of secondary complications of diabetes, providing an interesting target for therapeutic intervention. Extracts of Rauvolfia serpentina, a medicinal plant endemic to the Himalayan mountain range, have been known to be effective in alleviating diabetes and its complications. In this study, we aim to prospect for novel plant-derived inhibitors from R. serpentina and to understand structural basis of their interactions. An extensive library of R. serpentina molecules was compiled and computationally screened for inhibitory action against AR. The stability of complexes, with docked leads, was verified using molecular dynamics simulations. Two structurally distinct plant-derived leads were identified as inhibitors: indobine and indobinine. Further, using these two leads as templates, 16 more leads were identified through ligand-based screening of their structural analogs, from a small molecules database. Thus, we obtained plant-derived indole alkaloids, and their structural analogs, as potential AR inhibitors from a manually curated dataset of R. serpentina molecules. Indole alkaloids reported herein, as a novel structural class unreported hitherto, may provide better insights for designing potential AR inhibitors with improved efficacy and fewer side effects. PMID:23613832

Prospecting for novel plant-derived molecules of Rauvolfia serpentina as inhibitors of Aldose Reductase, a potent drug target for diabetes and its complications.

PubMed

Pathania, Shivalika; Randhawa, Vinay; Bagler, Ganesh

2013-01-01

Aldose Reductase (AR) is implicated in the development of secondary complications of diabetes, providing an interesting target for therapeutic intervention. Extracts of Rauvolfia serpentina, a medicinal plant endemic to the Himalayan mountain range, have been known to be effective in alleviating diabetes and its complications. In this study, we aim to prospect for novel plant-derived inhibitors from R. serpentina and to understand structural basis of their interactions. An extensive library of R. serpentina molecules was compiled and computationally screened for inhibitory action against AR. The stability of complexes, with docked leads, was verified using molecular dynamics simulations. Two structurally distinct plant-derived leads were identified as inhibitors: indobine and indobinine. Further, using these two leads as templates, 16 more leads were identified through ligand-based screening of their structural analogs, from a small molecules database. Thus, we obtained plant-derived indole alkaloids, and their structural analogs, as potential AR inhibitors from a manually curated dataset of R. serpentina molecules. Indole alkaloids reported herein, as a novel structural class unreported hitherto, may provide better insights for designing potential AR inhibitors with improved efficacy and fewer side effects.

A new high-precision 40Ar/39Ar age for the Rochechouart impact structure: At least 5 Ma older than the Triassic-Jurassic boundary

NASA Astrophysics Data System (ADS)

Cohen, Benjamin E.; Mark, Darren F.; Lee, Martin R.; Simpson, Sarah L.

2017-08-01

The Rochechourt impact structure in south-central France, with maximum diameter of 40-50 km, has previously been dated to within 1% uncertainty of the Triassic-Jurassic boundary, at which time 30% of global genera became extinct. To evaluate the temporal relationship between the impact and the Triassic-Jurassic boundary at high precision, we have re-examined the structure's age using multicollector ARGUS-V 40Ar/39Ar mass spectrometry. Results from four aliquots of impact melt are highly reproducible, and yield an age of 206.92 ± 0.20/0.32 Ma (2σ, full analytical/external uncertainties). Thus, the Rochechouart impact structure predates the Triassic-Jurassic boundary by 5.6 ± 0.4 Ma and so is not temporally linked to the mass extinction. Rochechouart has formerly been proposed to be part of a multiple impact event, but when compared with new ages from the other purported "paired" structures, the results provide no evidence for synchronous impacts in the Late Triassic. The widespread Central Atlantic Magmatic Province flood basalts remain the most likely cause of the Triassic-Jurassic mass extinction.

Genomic Evidence Reveals the Extreme Diversity and Wide Distribution of the Arsenic-Related Genes in Burkholderiales

PubMed Central

Li, Xiangyang; Zhang, Linshuang; Wang, Gejiao

2014-01-01

So far, numerous genes have been found to associate with various strategies to resist and transform the toxic metalloid arsenic (here, we denote these genes as “arsenic-related genes”). However, our knowledge of the distribution, redundancies and organization of these genes in bacteria is still limited. In this study, we analyzed the 188 Burkholderiales genomes and found that 95% genomes harbored arsenic-related genes, with an average of 6.6 genes per genome. The results indicated: a) compared to a low frequency of distribution for aio (arsenite oxidase) (12 strains), arr (arsenate respiratory reductase) (1 strain) and arsM (arsenite methytransferase)-like genes (4 strains), the ars (arsenic resistance system)-like genes were identified in 174 strains including 1,051 genes; b) 2/3 ars-like genes were clustered as ars operon and displayed a high diversity of gene organizations (68 forms) which may suggest the rapid movement and evolution for ars-like genes in bacterial genomes; c) the arsenite efflux system was dominant with ACR3 form rather than ArsB in Burkholderiales; d) only a few numbers of arsM and arrAB are found indicating neither As III biomethylation nor AsV respiration is the primary mechanism in Burkholderiales members; (e) the aio-like gene is mostly flanked with ars-like genes and phosphate transport system, implying the close functional relatedness between arsenic and phosphorus metabolisms. On average, the number of arsenic-related genes per genome of strains isolated from arsenic-rich environments is more than four times higher than the strains from other environments. Compared with human, plant and animal pathogens, the environmental strains possess a larger average number of arsenic-related genes, which indicates that habitat is likely a key driver for bacterial arsenic resistance. PMID:24632831

Precipitation Phase Partitioning during Inland Penetrating Atmospheric River events: Role of Initial Land Surface Conditions

NASA Astrophysics Data System (ADS)

Rudisill, W. J.; Flores, A. N.; FitzGerald, K.; Masarik, M. T.

2017-12-01

In the Western US, the occurrence (or lack thereof) of a handful of cool-season Atmospheric River (AR) events exerts significant controls on the seasonal water budget in many watersheds. The occurrence of these ARs can serve to alleviate drought and can also lead to significant flooding. In winter seasons, ARs typically bring warmer than average conditions and both rain and snow. To date, there has been little effort to understand how the land surface hydrological states prior to and during the arrival of ARs, acting on the surface water and energy balance, impact the onset, extent, and evolution of precipitation intensity and phase during AR events. While precipitation arriving as snow can contribute to seasonal snowpacks that lead to runoff later in hot/dry seasons, liquid precipitation can contribute to more rapid runoff or deplete existing snowpacks. The latter case, in which latent and advected heat from fallen rain causes snowmelt, is a key mechanism of flood and landslide-producing runoff in the Western United States. Motivated by an extensive, flood producing AR in 2010, we examine the sensitivity of hydrometeor phase to land surface forcings (sensible/latent heating, short/longwave radiation) using the WRF (Weather Research and Forecasting) model in Central Idaho. Specifically, we evaluate whether pre-existing snow covered area extent, snow water equivalent (SWE), and cold-content influence the partitioning of precipitation into solid and liquid phases during inland AR events. Our experimental design leverages a long-term coupled land-atmosphere simulation with WRF over the study domain in order to evaluate how a set of particular AR events evolve when exposed to initial land surface states capturing a broad range of climatological conditions during the past 30 years.

On the 40Ar/39Ar Dating of Low-Potassium Ocean Crust Basalt from IODP Expedition 349, South China Sea

NASA Astrophysics Data System (ADS)

Koppers, A. A. P.

2014-12-01

Accurate age dates for the basement rocks in the South China Sea (SCS) basins were lacking before the execution of International Ocean Discovery Program (IODP) Expedition 349 in early 2014. This left a large margin of error in estimated opening ages for the SCS and rendered various hypotheses regarding its opening mechanism and history untested, hampering our understanding of East Asian tectonic and paleoenvironmental evolution. Therefore, high-precision 40Ar/39Ar age dating lies at the heart of Expedition 349, which in particular aimed to determine the timing of the start and cessation of seafloor spreading in the SCS. In addition, the recovery of a complete seamount apron section at Site U1431 allows 40Ar/39Ar dating of abundantly present plagioclase and biotite crystals to help establish a detailed chronology of the sedimentary and volcaniclastic sequences cored. Here we present the first 40Ar/39Ar incremental heating ages on the low-potassium (~0.1-0.2 wt% K2O) and the least altered (loss on ignition < 1.5%) mid-ocean ridge basalt (MORB) from the SCS. Plagioclase and groundmass samples were prepared using conventional mineral separation techniques, acid-leaching and hand-picking. Analyses were carried out using a new ARGUS-VI multi-collector noble gas mass spectrometer. Ages are expected to have precisions ranging between 0.1-0.3 Ma (2σ), which will allow us to precisely and accurately date the final emplacement of basalts at Sites U1431, U1433 and U1434 in the SCS basin, just prior to the cessation of spreading as all sites were slightly offset from the relict spreading center.

INTERMITTENCY AND MULTIFRACTALITY SPECTRA OF THE MAGNETIC FIELD IN SOLAR ACTIVE REGIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abramenko, Valentyna; Yurchyshyn, Vasyl

We present the results of a study of intermittency and multifractality of magnetic structures in solar active regions (ARs). Line-of-sight magnetograms for 214 ARs of different flare productivity observed at the center of the solar disk from 1997 January until 2006 December are utilized. Data from the Michelson Doppler Imager (MDI) instrument on board the Solar and Heliospheric Observatory operating in the high resolution mode, the Big Bear Solar Observatory digital magnetograph, and the Hinode SOT/SP instrument were used. Intermittency spectra were derived from high-order structure functions and flatness functions. The flatness function exponent is a measure of the degreemore » of intermittency. We found that the flatness function exponent at scales below approximately 10 Mm is correlated with flare productivity (the correlation coefficient is -0.63). The Hinode data show that the intermittency regime is extended toward small scales (below 2 Mm) as compared to the MDI data. The spectra of multifractality, derived from the structure functions and flatness functions, are found to be broader for ARs of higher flare productivity as compared to those of low flare productivity. The magnetic structure of high-flaring ARs consists of a voluminous set of monofractals, and this set is much richer than that for low-flaring ARs. The results indicate the relevance of the multifractal organization of the photospheric magnetic fields to the flaring activity. The strong intermittency observed in complex and high-flaring ARs is a hint that we observe a photospheric imprint of enhanced sub-photospheric dynamics.« less

Discovery of novel aldose reductase inhibitors using a protein structure-based approach: 3D-database search followed by design and synthesis.

PubMed

Iwata, Y; Arisawa, M; Hamada, R; Kita, Y; Mizutani, M Y; Tomioka, N; Itai, A; Miyamoto, S

2001-05-24

Aldose reductase (AR) has been implicated in the etiology of diabetic complications. Due to the limited number of currently available drugs for the treatment of diabetic complications, we have carried out structure-based drug design and synthesis in an attempt to find new types of AR inhibitors. With the ADAM&EVE program, a three-dimensional database (ACD3D) was searched using the ligand binding site of the AR crystal structure. Out of 179 compounds selected through this search followed by visual inspection, 36 compounds were purchased and subjected to a biological assay. Ten compounds showed more than 40% inhibition of AR at a 15 microg/mL concentration. In a subsequent lead optimization, a series of analogues of the most active compound were synthesized based on the docking mode derived by ADAM&EVE. Many of these congeners exhibited higher activities compared to the mother compound. Indeed, the most potent, synthesized compound showed an approximately 20-fold increase in inhibitory activity (IC(50) = 0.21 vs 4.3 microM). Furthermore, a hydrophobic subsite was newly inferred, which would be useful for the design of inhibitors with improved affinity for AR.

Effect of microstructural evolution on mechanical and tribological properties of Ti-doped DLC films: How was an ultralow friction obtained?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhao, Fei; Li, Hongxuan; Ji, Li

2016-05-15

This paper examined the evolution of microstructure and its effect on the mechanical and tribological properties of ultralow friction Ti-doped diamondlike carbon (DLC) films, by adjusting the CH{sub 4}/Ar ratio under constant radio frequency discharge power and bias. The Raman, high resolution transmission electron microscopy, atomic force microscope and nanoindentation measurements consistently reveal or indicate the formation of curved graphene sheets or fullerenelike nanostructures with increasing CH{sub 4}/Ar ratio. The superior frictional performance (0.008–0.01) of Ti-DLC films can be attributed to the special microstructure related to the development of embedded fullerenelike nanostructures as a result of incorporation of TiO{sub 2}more » clusters. The contributing factors include high hardness and cohesion, excellent toughness, high load-bearing capacity, as well as the ultralow shear resistance transform layer and the excellent antioxidation stability brought by the doped Ti.« less

Anomalous behavior in temporal evolution of ripple wavelength under medium energy Ar{sup +}-ion bombardment on Si: A case of initial wavelength selection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garg, Sandeep Kumar; Inter-University Accelerator Centre, Aruna Asaf Ali Marg, New Delhi 110 067; Cuerno, Rodolfo

We have studied the early stage dynamics of ripple patterns on Si surfaces, in the fluence range of 1–3 × 10{sup 18} ions cm{sup −2}, as induced by medium energy Ar{sup +}-ion irradiation at room temperature. Under our experimental conditions, the ripple evolution is found to be in the linear regime, while a clear decreasing trend in the ripple wavelength is observed up to a certain time (fluence). Numerical simulations of a continuum model of ion-sputtered surfaces suggest that this anomalous behavior is due to the relaxation of the surface features of the experimental pristine surface during the initial stage of patternmore » formation. The observation of this hitherto unobserved behavior of the ripple wavelength seems to have been enabled by the use of medium energy ions, where the ripple wavelengths are found to be order(s) of magnitude larger than those at lower ion energies.« less

Thermochronology and tectonics of the Leeward Antilles: Evolution of the southern Caribbean Plate boundary zone

USGS Publications Warehouse

van der Lelij, Roelant; Spikings, Richard A.; Kerr, Andrew C.; Kounov, Alexandre; Cosca, Michael; Chew, David; Villagomez, Diego

2010-01-01

Tectonic reconstructions of the Caribbean Plate are severely hampered by a paucity of geochronologic and exhumation constraints from anastomosed basement blocks along its southern margin. New U/Pb, 40Ar/39Ar, apatite fission track, and apatite (U-Th)/He data constrain quantitative thermal and exhumation histories, which have been used to propose a model for the tectonic evolution of the emergent parts of the Bonaire Block and the southern Caribbean Plate boundary zone. An east facing arc system intruded through an oceanic plateau during ~90 to ~87 Ma and crops out on Aruba. Subsequent structural displacements resulted in >80°C of cooling on Aruba during 70–60 Ma. In contrast, exhumation of the island arc sequence exposed on Bonaire occurred at 85–80 Ma and 55–45 Ma. Santonian exhumation on Bonaire occurred immediately subsequent to burial metamorphism and may have been driven by the collision of a west facing island arc with the Caribbean Plate. Island arc rocks intruded oceanic plateau rocks on Gran Roque at ~65 Ma and exhumed rapidly at 55–45 Ma. We attribute Maastrichtian-Danian exhumation on Aruba and early Eocene exhumation on Bonaire and Gran Roque to sequential diachronous accretion of their basement units to the South American Plate. Widespread unconformities indicate late Eocene subaerial exposure. Late Oligocene–early Miocene dextral transtension within the Bonaire Block drove subsidence and burial of crystalline basement rocks of the Leeward Antilles to ≤1 km. Late Miocene–recent transpression caused inversion and ≤1 km of exhumation, possibly as a result of the northward escape of the Maracaibo Block.

The Ninole Basalt - Implications for the structural evolution of Mauna Loa volcano, Hawaii

USGS Publications Warehouse

Lipman, P.W.; Rhodes, J.M.; Dalrymple, G.B.

1990-01-01

Lava flows of the Ninole Basalt, the oldest rocks exposed on the south side of the island of Hawaii, provide age and compositional constraints on the evolution of Mauna Loa volcano and the southeastward age progression of Hawaiian volcanism. Although the tholeiitic Ninole Basalt differs from historic lavas of Mauna Loa volcano in most major-element contents (e.g., variably lower K, Na, Si; higher Al, Fe, Ti, Ca), REE and other relatively immobile minor elements are similar to historic and prehistoric Mauna Loa lavas, and the present major-element differences are mainly due to incipient weathering in the tropical environment. New K-Ar whole-rock ages, from relatively fresh roadcut samples, suggest that the age of the Ninole Basalt is approximately 0.1-0.2 Ma, although resolution is poor because of low contents of K and radiogenic Ar. Originally considered the remnants of a separate volcano, the Ninole Hills are here interpreted as faulted remnants of the old south flank of Mauna Loa. Deep canyons in the Ninole Hills, eroded after massive landslide failure of flanks of the southwest rift zone, have been preserved from burial by younger lava due to westward migration of the rift zone. Landslide-induced depressurization of the southwest rift zone may also have induced phreatomagmatic eruptions that could have deposited widespread Basaltic ash that overlies the Ninole Basalt. Subaerial presence of the Ninole Basalt documents that the southern part of Hawaii Island had grown to much of its present size above sea level by 0.1-0.2 Ma, and places significant limits on subsequent enlargement of the south flank of Mauna Loa. ?? 1990 Springer-Verlag.

The Ninole Basalt — Implications for the structural evolution of Mauna Loa volcano, Hawaii

NASA Astrophysics Data System (ADS)

Lipman, Peter W.; Rhodes, J. M.; Dalrymple, G. Brent

1990-12-01

Lava flows of the Ninole Basalt, the oldest rocks exposed on the south side of the island of Hawaii, provide age and compositional constraints on the evolution of Mauna Loa volcano and the southeastward age progression of Hawaiian volcanism. Although the tholeiitic Ninole Basalt differs from historic lavas of Mauna Loa volcano in most major-element contents (e.g., variably lower K, Na, Si; higher Al, Fe, Ti, Ca), REE and other relatively immobile minor elements are similar to historic and prehistoric Mauna Loa lavas, and the present major-element differences are mainly due to incipient weathering in the tropical environment. New K-Ar whole-rock ages, from relatively fresh roadcut samples, suggest that the age of the Ninole Basalt is approximately 0.1 0.2 Ma, although resolution is poor because of low contents of K and radiogenic Ar. Originally considered the remnants of a separate volcano, the Ninole Hills are here interpreted as faulted remnants of the old south flank of Mauna Loa. Deep canyons in the Ninole Hills, eroded after massive landslide failure of flanks of the southwest rift zone, have been preserved from burial by younger lava due to westward migration of the rift zone. Landslide-induced depressurization of the southwest rift zone may also have induced phreatomagmatic eruptions that could have deposited widespread Basaltic ash that overlies the Ninole Basalt. Subaerial presence of the Ninole Basalt documents that the southern part of Hawaii Island had grown to much of its present size above sea level by 0.1 0.2 Ma, and places significant limits on subsequent enlargement of the south flank of Mauna Loa.

The thermal evolution of Chinese central Tianshan and its implications: Insights from multi-method chronometry

NASA Astrophysics Data System (ADS)

Yin, Jiyuan; Chen, Wen; Hodges, Kip V.; Xiao, Wenjiao; Cai, Keda; Yuan, Chao; Sun, Min; Liu, Li-Ping; van Soest, Matthijs C.

2018-01-01

The Chinese Tianshan is located in the south of the Central Asian Orogenic Belt and formed during final consumption of the Paleo-Asian Ocean in the late Palaeozoic. In order to further elucidate the tectonic evolution of the Chinese Tianshan, we have established the temperature-time history of granitic rocks from the Chinese Tianshan through a multi-chronological approach that includes U/Pb (zircon), 40Ar/39Ar (biotite and K-feldspar), and (U-Th)/He (zircon and apatite) dating. Our data show that the central Tianshan experienced accelerated cooling during the late Carboniferous- to early Permian. Multiple sequences of complex multiple accretionary, subduction and collisional events could have induced the cooling in the Tianshan Orogenic Belt. The new 40Ar/39Ar and (U-Th)/He data, in combination with thermal history modeling results, reveal that several tectonic reactivation and exhumation episodes affected the Chinese central Tianshan during middle Triassic (245-210 Ma), early Cretaceous (140-100 Ma), late Oligocene-early Miocene (35-20 Ma) and late Miocene (12-9 Ma). The middle Triassic cooling dates was only found in the central Tianshan. Strong uplift and deformation in the Chinese Tianshan has been limited and localized. It have been concentrated in around major fault zone and the foreland thrust belt since the early Cretaceous. The middle Triassic and early Cretaceous exhumation is interpreted as distal effects of the Cimmerian collisions (i.e. the Qiangtang and Kunlun-Qaidam collision and Lhasa-Qiangtang collision) at the southern Eurasian margin. The Cenozoic reactivation and exhumation is interpreted as a far field response to the India-Eurasia collision and represents the beginning of modern mountain building and denudation in the Chinese Tianshan.

CalWater 2 - Precipitation, Aerosols, and Pacific Atmospheric Rivers Experiment

NASA Astrophysics Data System (ADS)

Spackman, J. R.; Ralph, F. M.; Prather, K. A.; Cayan, D. R.; DeMott, P. J.; Dettinger, M. D.; Fairall, C. W.; Leung, L. R.; Rosenfeld, D.; Rutledge, S. A.; Waliser, D. E.; White, A. B.

2014-12-01

Emerging research has identified two phenomena that play key roles in the variability of the water supply and the incidence of extreme precipitation events along the West Coast of the United States. These phenomena include the role of (1) atmospheric rivers (ARs) in delivering much of the precipitation associated with major storms along the U.S. West Coast, and (2) aerosols—from local sources as well as those transported from remote continents—and their modulating effects on western U.S. precipitation. A better understanding of these processes is needed to reduce uncertainties in weather predictions and climate projections of extreme precipitation and its effects, including the provision of beneficial water supply. This presentation summarizes the science objectives and strategies to address gaps associated with (1) the evolution and structure of ARs including cloud and precipitation processes and air-sea interaction, and (2) aerosol interaction with ARs and the impact on precipitation, including locally-generated aerosol effects on orographic precipitation along the U.S. West Coast. Observations are proposed for multiple winter seasons as part of a 5-year broad interagency vision referred to as CalWater 2 to address these science gaps (http://esrl.noaa.gov/psd/calwater). In January-February 2015, a field campaign has been planned consisting of a targeted set of aircraft and ship-based measurements and associated evaluation of data in near-shore regions of California and in the eastern Pacific. In close coordination with NOAA, DOE's Atmospheric Radiation Measurement (ARM) program is also contributing air and shipborne facilities for ACAPEX (ARM Cloud Aerosol and Precipitation Experiment), a DOE-sponsored study complementing CalWater 2. Ground-based measurements from NOAA's HydroMeteorological Testbed (HMT) network in California and aerosol chemical instrumentation at Bodega Bay, California have been designed to add important near surface-level context for the offshore measurements during AR landfall along the California coast.

Investigations of young (< 2.94 Ma) Hadar Formation deposits and their implication for basin development in southern Afar, Ethiopia

NASA Astrophysics Data System (ADS)

DiMaggio, E.; Arrowsmith, R.; Campisano, C. J.; Johnson, R. A.; Deino, A. L.; Warren, M.; Fisseha, S.; Cohen, A. S.

2014-12-01

Sedimentary deposits in Pliocene extensional rift basins in the Afar Depression, Ethiopia chronicle the evolution and paleoenvironmental context of early humans. In the lower Awash Valley, the long-studied Hadar Basin still lacks constraints on basin development during the onset and termination of Hadar Formation (~3.8 - 2.94 Ma) sedimentation. Here we present new mapping and analysis of tephra deposits from a 26 meter-thick section of sediments exposed in the central Ledi-Geraru project area at Gulfaytu, including 20 m of sediments and tephras conformably overlying a 2.94 Ma tephra marker bed (BKT-2U) that previously served as the uppermost dated tephra of the Hadar Formation. Within the overlying 20 meters of primarily lacustrine strata, we identified eight post-BKT-2U tuffs; four were suitable for geochemical characterization, and one yielded an 40Ar/39Ar age of 2.931 ± 0.034 Ma. Based on regional sedimentation rates and the tephra 40Ar/39Ar age, we infer that the newly mapped Hadar Formation at Gulfaytu represents ca. 20 kyr of post-BKT-2 sedimentation. An erosional surface marked by a conglomerate truncates the strata at Gulfaytu, and shows similarities to the well-documented Busidima unconformity surface to the southwest, suggesting that structural changes after 2.93 Ma also affected basin conditions in central Ledi-Geraru. Furthermore, subsurface geophysical investigations support a model whereby deposition rates and the stratigraphic thickness of paleo-Lake Hadar sediments are greatest in the central Ledi-Geraru, ~20 km northeast of the well-exposed lacustrine-dominated sediments of the Hadar Formation. In addition to preserving a record of post-BKT-2 strata, the central Ledi Geraru hosts the thickest subsurface lacustrine sedimentary record within the Hadar Basin hitherto described, making central Ledi-Geraru an ideal location for collecting a continuous core by the Hominin Sites and Paleolakes Drilling Project (HSPDP).

Successive reactivation of older structures under variable heat flow conditions evidenced by K-Ar fault gouge dating in Sierra de Ambato, northern Argentine broken foreland

NASA Astrophysics Data System (ADS)

Nóbile, Julieta C.; Collo, Gilda; Dávila, Federico M.; Martina, Federico; Wemmer, Klaus

2015-12-01

The Argentine broken foreland has been the subject of continuous research to determine the uplift and exhumation history of the region. High-elevation mountains are the result of N-S reverse faults that disrupted a W-E Miocene Andean foreland basin. In the Sierra de Ambato (northern Argentine broken foreland) the reverse faults offset Neogene sedimentary rocks (Aconquija Fm., ˜9 Ma) and affect the basement comprising Paleozoic metamorphic rocks that have been dated at ˜477-470 Ma. In order to establish a chronology of these faults affecting the previous continuous basin we date the formation age of clay minerals associated with fault gouge using the K-Ar dating technique. Clay mineral formation is a fundamental process in the evolution of faults under the brittle regime (<<300 °C). K-Ar ages (9 fractions from 3 samples collected along a transect in the Sierra de Ambato) vary from Late Devonian to Late Triassic (˜360-220 Ma). This age distribution can be explained by a long lasting brittle deformation history with a minimum age of ˜360 Ma and a last clay minerals forming event at ˜220 Ma. Moreover, given the progression of apparent ages decreasing from coarse to fine size fractions (˜360-311 Ma for 2-1 μm grain size fraction, ˜326-286 Ma for 1-0.2 μm and ˜291-219 Ma of <0.2 μm), we modeled discrete deformation events at ˜417 Ma (ending of the Famatinian cycle), ˜317-326 Ma (end of Gondwanic orogeny), and ˜194-279 Ma (Early Permian - Jurassic deformation). According to our data, the Neogene reactivation would not have affected the K-Ar system neither generated a significant clay minerals crystallization in the fault gouge, although an exhumation of more than 2 Km is recorded in this period from stratigraphic data.

Elimination of resistive losses in large-area LEDs by new diffusion-driven devices

NASA Astrophysics Data System (ADS)

Kivisaari, Pyry; Kim, Iurii; Suihkonen, Sami; Oksanen, Jani

2017-02-01

High-power operation of conventional GaN-based light-emitting diodes (LEDs) is severely limited by current crowding, which increases the bias voltage of the LED, concentrates light emission close to the p-type contact edge, and aggravates the efficiency droop. Fabricating LEDs on thick n-GaN substrates alleviates current crowding but requires the use of expensive bulk GaN substrates and fairly large n-contacts, which take away a large part of the active region (AR). In this work, we demonstrate through comparative simulations how the recently introduced diffusion-driven charge transport (DDCT) concept can be used to realize lateral heterojunction (LHJ) structures, which eliminate most of the lateral current crowding. Specifically in this work, we analyze how using a single-side graded AR can both facilitate electron and hole diffusion in DDCT and increase the effective AR thickness. Our simulations show that the increased effective AR thickness allows a substantial reduction in the efficiency droop at large currents, and that unlike conventional 2D LEDs, the LHJ structure shows practically no added efficiency loss or differential resistance due to current crowding. Furthermore, as both electrons and holes enter the AR from the same side without any notable potential barriers in the LHJ structure, the LHJ structure shows an additional wall-plug efficiency gain over the conventional structures under comparison. This injection from the same side is expected to be even more interesting in multiple quantum well structures, where carriers typically need to surpass several potential barriers in conventional LEDs before recombining. In addition to simulations, we also demonstrate selective-area growth of a finger structure suitable for operation as an LHJ device with 2µm distance between n- and p-GaN regions.

Communication: Determining the structure of the N{sub 2}Ar van der Waals complex with laser-based channel-selected Coulomb explosion

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, Chengyin, E-mail: cywu@pku.edu.cn; Liu, Yunquan; Gong, Qihuang

2014-04-14

We experimentally reconstructed the structure of the N{sub 2}Ar van der Waals complex with the technique of laser-based channel-selected Coulomb explosion imaging. The internuclear distance between the N{sub 2} center of mass and the Ar atom, i.e., the length of the van der Waals bond, was determined to be 3.88 Å from the two-body explosion channels. The angle between the van der Waals bond and the N{sub 2} principal axis was determined to be 90° from the three-body explosion channels. The reconstructed structure was contrasted with our high level ab initio calculations. The agreement demonstrated the potential application of laser-basedmore » Coulomb explosion in imaging transient molecular structure, particularly for floppy van der Waals complexes, whose structures remain difficult to be determined by conventional spectroscopic methods.« less

Learning Protein Structure with Peers in an AR-Enhanced Learning Environment

ERIC Educational Resources Information Center

Chen, Yu-Chien

2013-01-01

Augmented reality (AR) is an interactive system that allows users to interact with virtual objects and the real world at the same time. The purpose of this dissertation was to explore how AR, as a new visualization tool, that can demonstrate spatial relationships by representing three dimensional objects and animations, facilitates students to…

Novel features of ARS selection in budding yeast Lachancea kluyveri

PubMed Central

2011-01-01

Background The characterization of DNA replication origins in yeast has shed much light on the mechanisms of initiation of DNA replication. However, very little is known about the evolution of origins or the evolution of mechanisms through which origins are recognized by the initiation machinery. This lack of understanding is largely due to the vast evolutionary distances between model organisms in which origins have been examined. Results In this study we have isolated and characterized autonomously replicating sequences (ARSs) in Lachancea kluyveri - a pre-whole genome duplication (WGD) budding yeast. Through a combination of experimental work and rigorous computational analysis, we show that L. kluyveri ARSs require a sequence that is similar but much longer than the ARS Consensus Sequence well defined in Saccharomyces cerevisiae. Moreover, compared with S. cerevisiae and K. lactis, the replication licensing machinery in L. kluyveri seems more tolerant to variations in the ARS sequence composition. It is able to initiate replication from almost all S. cerevisiae ARSs tested and most Kluyveromyces lactis ARSs. In contrast, only about half of the L. kluyveri ARSs function in S. cerevisiae and less than 10% function in K. lactis. Conclusions Our findings demonstrate a replication initiation system with novel features and underscore the functional diversity within the budding yeasts. Furthermore, we have developed new approaches for analyzing biologically functional DNA sequences with ill-defined motifs. PMID:22204614

Novel features of ARS selection in budding yeast Lachancea kluyveri.

PubMed

Liachko, Ivan; Tanaka, Emi; Cox, Katherine; Chung, Shau Chee Claire; Yang, Lu; Seher, Arael; Hallas, Lindsay; Cha, Eugene; Kang, Gina; Pace, Heather; Barrow, Jasmine; Inada, Maki; Tye, Bik-Kwoon; Keich, Uri

2011-12-28

The characterization of DNA replication origins in yeast has shed much light on the mechanisms of initiation of DNA replication. However, very little is known about the evolution of origins or the evolution of mechanisms through which origins are recognized by the initiation machinery. This lack of understanding is largely due to the vast evolutionary distances between model organisms in which origins have been examined. In this study we have isolated and characterized autonomously replicating sequences (ARSs) in Lachancea kluyveri - a pre-whole genome duplication (WGD) budding yeast. Through a combination of experimental work and rigorous computational analysis, we show that L. kluyveri ARSs require a sequence that is similar but much longer than the ARS Consensus Sequence well defined in Saccharomyces cerevisiae. Moreover, compared with S. cerevisiae and K. lactis, the replication licensing machinery in L. kluyveri seems more tolerant to variations in the ARS sequence composition. It is able to initiate replication from almost all S. cerevisiae ARSs tested and most Kluyveromyces lactis ARSs. In contrast, only about half of the L. kluyveri ARSs function in S. cerevisiae and less than 10% function in K. lactis. Our findings demonstrate a replication initiation system with novel features and underscore the functional diversity within the budding yeasts. Furthermore, we have developed new approaches for analyzing biologically functional DNA sequences with ill-defined motifs.

Ardipithecus ramidus and the paleobiology of early hominids.

PubMed

White, Tim D; Asfaw, Berhane; Beyene, Yonas; Haile-Selassie, Yohannes; Lovejoy, C Owen; Suwa, Gen; WoldeGabriel, Giday

2009-10-02

Hominid fossils predating the emergence of Australopithecus have been sparse and fragmentary. The evolution of our lineage after the last common ancestor we shared with chimpanzees has therefore remained unclear. Ardipithecus ramidus, recovered in ecologically and temporally resolved contexts in Ethiopia's Afar Rift, now illuminates earlier hominid paleobiology and aspects of extant African ape evolution. More than 110 specimens recovered from 4.4-million-year-old sediments include a partial skeleton with much of the skull, hands, feet, limbs, and pelvis. This hominid combined arboreal palmigrade clambering and careful climbing with a form of terrestrial bipedality more primitive than that of Australopithecus. Ar. ramidus had a reduced canine/premolar complex and a little-derived cranial morphology and consumed a predominantly C3 plant-based diet (plants using the C3 photosynthetic pathway). Its ecological habitat appears to have been largely woodland-focused. Ar. ramidus lacks any characters typical of suspension, vertical climbing, or knuckle-walking. Ar. ramidus indicates that despite the genetic similarities of living humans and chimpanzees, the ancestor we last shared probably differed substantially from any extant African ape. Hominids and extant African apes have each become highly specialized through very different evolutionary pathways. This evidence also illuminates the origins of orthogrady, bipedality, ecology, diet, and social behavior in earliest Hominidae and helps to define the basal hominid adaptation, thereby accentuating the derived nature of Australopithecus.

Ligand induced change of β2 adrenergic receptor from active to inactive conformation and its implication for the closed/open state of the water channel: insight from molecular dynamics simulation, free energy calculation and Markov state model analysis.

PubMed

Bai, Qifeng; Pérez-Sánchez, Horacio; Zhang, Yang; Shao, Yonghua; Shi, Danfeng; Liu, Huanxiang; Yao, Xiaojun

2014-08-14

The reported crystal structures of β2 adrenergic receptor (β2AR) reveal that the open and closed states of the water channel are correlated with the inactive and active conformations of β2AR. However, more details about the process by which the water channel states are affected by the active to inactive conformational change of β2AR remain illusive. In this work, molecular dynamics simulations are performed to study the dynamical inactive and active conformational change of β2AR induced by inverse agonist ICI 118,551. Markov state model analysis and free energy calculation are employed to explore the open and close states of the water channel. The simulation results show that inverse agonist ICI 118,551 can induce water channel opening during the conformational transition of β2AR. Markov state model (MSM) analysis proves that the energy contour can be divided into seven states. States S1, S2 and S5, which represent the active conformation of β2AR, show that the water channel is in the closed state, while states S4 and S6, which correspond to the intermediate state conformation of β2AR, indicate the water channel opens gradually. State S7, which represents the inactive structure of β2AR, corresponds to the full open state of the water channel. The opening mechanism of the water channel is involved in the ligand-induced conformational change of β2AR. These results can provide useful information for understanding the opening mechanism of the water channel and will be useful for the rational design of potent inverse agonists of β2AR.

Structured Analysis for the Logistic Support Analysis (LSA) Task and the Integrated Logistic Support (ILS) Element. Structured Analysis - ILS Assessment Element E11. Design Influence

DTIC Science & Technology

1989-01-01

format size of this report, the full identifying entry may well be forcibly shortened, thereby introducing the possibility of misunderstanding. Therefore...OF MATERIEL" 3d . "AR 570-9, "MANPOWER AND EQUIPMENT CONTROL - HOST NATION SUPPORT" 2. AR 700-9, "POLICIES OF THE ARMY LOGISTIC SYSTEM" 3. AR 700-82...PERSONNEL 4. TRAINING 5. SYSTEM SAFETY 6. HEALTH HAZARDS. TEE ASSESSMENT Or MANPRINT INFLUENCE ON DESIGNS IS ADDRESSED IN SIX (6) SPECIFIC AREAS IN

Vibrational and rotational energy transfers involving the CH B 2Σ- v=1 vibrational level in collisions with Ar, CO, and N2O

NASA Astrophysics Data System (ADS)

Huang, Hong-Yi; Tsai, Ming-Tsang; Lin, King-Chuen

2006-04-01

With photolysis-probe technique, we have studied vibrational and rotational energy transfers of CH involving the B Σ-2 (v =1, 0⩽N⩽6, F) state by collisions with Ar, CO, and N2O. For the vibrational energy transfer (VET) measurements, the time-resolved fluorescence of the B-X(0,0) band is monitored following the (1,0) band excitation. For the rotational energy transfer (RET) measurements, the laser-induced fluorescence of the initially populated state is dispersed using a step-scan Fourier transform spectrometer. The time-resolved spectra obtained in the nanosecond regime may yield the RET information under a single pressure of the collider. The rate constants of intramolecular energy transfers are evaluated with simulation of kinetic models. The VET lies in the range of 4×10-12to4×10-11cm3molecule-1s-1, with efficiency following the order of Ar

Thermal evolution and exhumation of deep-level batholithic exposures, southernmost Sierra Nevada, California

USGS Publications Warehouse

Saleeby, J.; Farley, K.A.; Kistler, R.W.; Fleck, R.J.

2007-01-01

The Tehachapi complex lies at the southern end of the Sierra Nevada batholith adjacent to the Neogene-Quaternary Garlock fault. The complex is composed principally of high-pressure (8-10 kbar) Cretaceous batholithic rocks, and it represents the deepest exposed levels of a continuous oblique crustal section through the southern Sierra Nevada batholith. Over the southern ???100 km of this section, structural/petrologic continuity and geochronological data indicate that ???35 km of felsic to intermediate-composition crust was generated by copious arc magmatism primarily between 105 and 99 Ma. In the Tehachapi complex, these batholithic rocks intrude and are bounded to the west by similar-composition gneissic-textured high-pressure batholithic rocks emplaced at ca. 115-110 Ma. This lower crustal complex is bounded below by a regional thrust system, which in Late Cretaceous time tectonically eroded the underlying mantle lithosphere, and in series displaced and underplated the Rand Schist subduction assemblage by low-angle slip from the outboard Franciscan trench. Geophysical and mantle xenolith studies indicate that the remnants of this shallow subduction thrust descend northward through the crust and into the mantle, leaving the mantle lithosphere intact beneath the greater Sierra Nevada batholith. This north-dipping regional structure records an inflection in the Farallon plate, which was segmented into a shallow subduc-tion trajectory to the south and a normal steeper trajectory to the north. We combine new and published data from a broad spectrum of thermochronom-eters that together form a coherent data array constraining the thermal evolution of the complex. Integration of these data with published thermobarometric and petro-genetic data also constrains the tectonically driven decompression and exhumation history of the complex. The timing of arc magmatic construction of the complex, as denoted above, is resolved by a large body of U/Pb zircon ages. High-confidence thermochronometric data track a single retrogressing path commencing from widely established solidus conditions at ca. 100 Ma, and traversing through time-temperature space as follows: (1) Sm/Nd garnet ???770-680 ??C at ca. 102-95 Ma, (2) U/Pb titanite ???750-600 ??C at ca. 102-95 Ma, (3) Ar/Ar hornblende ???570-490 ??C at ca. 94-91 Ma, (4) Rb/Sr biotite ???390-260 ??C at ca. 90-86 Ma, (5) Ar/Ar biotite ???320-240 ??C at ca. 88-85 Ma, and (6) (U-Th)/He zircon ???230-170 ??C at ca. 88-83 Ma. Additional stratigraphic constraints place the complex at surface conditions in Paleocene-early Eocene time (ca. 66-55 Ma). Integration of these results with thermobarometric and structural data, including published data on the underlying Rand Schist, reveals a profound tectonic event whereby rapid cooling and exhumation at rates potentially as high as 100s ??C/m.y. and >5 mm/yr initiated at ca. 98 Ma and peaked between 96 and 94 Ma. Between 93 and 85 Ma, cooling rates remained high, but decelerated with or without significant exhumation. Subsequent cooling and exhumation rates are poorly constrained but were much slower and ultimately resulted in Paleocene-Eocene surface exposure. Initial rapid exhumation and cooling are hypothesized to have been driven by abrupt flattening in the corresponding segment of the Farallon plate and the resulting tectonic erosion of the underlying mantle lithosphere. Protolith as well as meta-morphic pressure-temperature and age constraints on the Rand Schist indicate its rapid low-angle subduction between 93 and 88 Ma. Comparison of the Rand Schist and Tehachapi complex pressure-temperature-time paths in conjunction with structural relations strongly suggest that the schist ascended the equivalent of ???4 kbar relative to the Tehachapi complex by low-angle normal displacement along the Rand fault between 88 and 80 Ma to attain its current underplated structural position. Such extensional tectonism is hypothesized to have been driven by slab rollback

Landscape Evolution Mechanisms in Gale Crater from In-Situ Measurement of Cosmogenic Noble Gas Isotopes

NASA Astrophysics Data System (ADS)

Martin, P.; Farley, K. A.; Mahaffy, P. R.; Malespin, C.; Vasconcelos, P. M.

2017-12-01

The Sample Analysis at Mars (SAM) instrument onboard the Curiosity rover can measure the noble gas isotopes contained in drilled rock samples on Mars by heating these samples to 930°C. In combination with bulk chemistry measured by the Alpha Particle X-ray Spectrometer (APXS), cosmogenic nuclide production rates can be determined and an exposure age may be calculated. Three cosmogenic nuclides are measured: 3He, and 21Ne, which are produced via spallation of mainly O, Mg, Si, and Al (held mostly in detrital grains); and 36Ar, which is produced from neutron capture of 35Cl (held mostly in secondary materials). To date, three samples have been measured: Cumberland (CB), Windjana (WJ), and Mojave 2 (MJ2). CB yielded 3He, 21Ne, and 36Ar ages of 72 ± 15, 84 ± 28, and 79 ± 24 Ma, respectively [Farley et al., 2014]. Two aliquots of WJ gave error-weighted mean ages of 30 ± 27 Ma (3He), 54 ± 19 Ma (21Ne), and 63 ± 84 Ma (36Ar) [Vasconcelos et al., 2016]. These relatively young ages were interpreted to suggest that a scarp-retreat mechanism is responsible for erosion at both the CB and WJ localities. The most recent measurements on MJ2 do not include the 21Ne isotope because of an instrument issue at this mass. 3He observed in MJ2 is the highest of any sample yet measured, suggesting an exposure age of approximately 1 Ga. In contrast, the calculated exposure age from 36Ar appears to be less than 100 Ma (despite a high uncertainty due to isobaric H35Cl). This discrepancy could be explained by 1) a contribution of extraterrestrial 3He from interplanetary dust or meteoritic fragments, or 2) approximately 1 Ga of prior exposure to the detrital grains. In the latter case 36Ar accumulates only after the Cl-bearing secondary minerals are formed and exposed at the surface. In either scenario the 36Ar measurement provides the better estimate of the recent exposure history. The young upper limit for 36Ar at MJ2 is consistent with the scarp-retreat mechanism observed at CB and WJ. These results have important implications in the search for organics in Gale Crater. Complex organic molecules are vulnerable to breakdown via cosmic ray bombardment. The apparent dominance of scarp-retreat landscape evolution in Gale Crater suggests that in the search for potentially biogenic organics, the base of a freshly eroded scarp offers the best potential for organics preservation.

Metamorphic and tectonic evolution of Ceuta peninsula (Internal Rif): new interpretation in the framework of arc and back arc evolution

NASA Astrophysics Data System (ADS)

Homonnay, Emmanuelle; Lardeaux, Jean-Marc; Corsini, Michel; Cenki-Tok, Bénédicte; Bosch, Delphine; Munch, Philippe; Romagny, Adrien; Ouazzani-Touhami, Mohamed

2016-04-01

In the last twenty years, various geophysical investigations have established that the Western Mediterranean opened in a subduction context as a back arc domain. In the Alboran basin the dip of the subduction plane is eastwards or southeastwards depending of considered models. If the geological records of back-arc opening are well-known, the arc-related tectonic and petrologic evolutions are still poorly documented. In order to decipher these markers, we focalised structural, petrological and thermo-chronological studies on the Ceuta peninsula located in the Rif belt, on the western part of the Gibraltar arc to the North of Morocco. The present-day tectonic pile is constituted by: (1) the upper Ceuta unit, composed of High Pressure and High Temperature metapelites retromorphosed under Amphibolite-facies condition, with Ultra-High Pressure relicts, and pyrigarnite and spinel bearing peridotites boudins at its base, (2) the lower Monte Hacho unit, with orthogneisses metamorphosed under Amphibolite-facies conditions. Structural analysis indicates a polyphase tectonic evolution: (1) an earlier deformation phase only observed in the UHP metapelites and characterized by a steep S1 foliation plane, (2) a main deformation phase associated to a pervasive gently dipping S2 foliation plane bearing a L2 stretching lineation and synschistose folds whose axes are parallel to L2 and (3) a late deformation phase which developed S3 foliation plane and L3 stretching lineation coeval with development of narrow normal ductile shear zones. A zone of increasing deformation, several dozen meters wide, is identified as a major ductile shear zone involving the peridotitic lenses at the base of the metapelites of the Ceuta unit and overlaying this upper unit on top of the orthogneisses of the Monte Hacho lower unit. The attitude of mylonitic foliation and stretching and mineral lineations as well as the numerous shear sense indicators observed in the shear zone are consistent with a thrusting toward the NE. Furthermore, biotite-sillimanite bearing S2 foliation affecting the whole of crustal rocks is contemporaneous with the movement on this main ductile thrusting. We combined garnet-biotite and GASP thermo-barometers with thermodynamic modelling (Theriak-Domino) in order to constrain pressure and temperature conditions of D2 and D3 tectono-metamorphic events. P-T conditions of D2 deformation are in the range 7-10kbar and 770-820°C and are compatible with syn-tectonic partial melting. D3 deformation event occurred at 1-7kbar and 400-550°C. These metamorphic conditions reflect abnormally high geothermal gradients during both shortening and thinning and are clearly compatible with the thermal evolution recognized in continental arcs. Preliminary U-Th-Pb (monazite, zircon and xenotime) and previous Ar39/Ar40 (micas) analyses, furnished similar ages around 21 Ma for D2 and D3 events, suggesting a very fast transition from arc to back-arc dynamics.

Formation of silicon nanodots via ion beam sputtering of ultrathin gold thin film coatings on Si

PubMed Central

2011-01-01

Ion beam sputtering of ultrathin film Au coatings used as a physical catalyst for self-organization of Si nanostructures has been achieved by tuning the incident particle energy. This approach holds promise as a scalable nanomanufacturing parallel processing alternative to candidate nanolithography techniques. Structures of 11- to 14-nm Si nanodots are formed with normal incidence low-energy Ar ions of 200 eV and fluences above 2 × 1017 cm-2. In situ surface characterization during ion irradiation elucidates early stage ion mixing migration mechanism for nanodot self-organization. In particular, the evolution from gold film islands to the formation of ion-induced metastable gold silicide followed by pure Si nanodots formed with no need for impurity seeding. PMID:21711934

High temperature thermoelectric properties of strontium titanate thin films with oxygen vacancy and niobium doping.

PubMed

Kumar, S R Sarath; Barasheed, Abeer Z; Alshareef, H N

2013-08-14

We report the evolution of high temperature thermoelectric properties of SrTiO3 thin films doped with Nb and oxygen vacancies. Structure-property relations in this important thermoelectric oxide are elucidated and the variation of transport properties with dopant concentrations is discussed. Oxygen vacancies are incorporated during growth or annealing in Ar/H2 above 800 K. An increase in lattice constant due to the inclusion of Nb and oxygen vacancies is found to result in an increase in carrier density and electrical conductivity with simultaneous decrease in carrier effective mass and Seebeck coefficient. The lattice thermal conductivity at 300 K is found to be 2.22 W m(-1) K(-1), and the estimated figure of merit is 0.29 at 1000 K.

Dynamic Chemical and Structural Changes of Heterogeneous Catalysts Observed in Real Time: From Catalysis-Induced Fluxionality to Catalytic Cycles

DTIC Science & Technology

2014-11-26

zeolite and showed that a step in the Ar isotherm coincides with a change in the neutron diffraction pattern. Using grand canonical Monte Carlo...the stepped Ar isotherm at 77 K for a MFI zeolite . More recently, Mallon et al. surmised that the hysteresis of the Ar 87 K adsorption isotherm of

Quantization of systems with temporally varying discretization. II. Local evolution moves

NASA Astrophysics Data System (ADS)

Höhn, Philipp A.

2014-10-01

Several quantum gravity approaches and field theory on an evolving lattice involve a discretization changing dynamics generated by evolution moves. Local evolution moves in variational discrete systems (1) are a generalization of the Pachner evolution moves of simplicial gravity models, (2) update only a small subset of the dynamical data, (3) change the number of kinematical and physical degrees of freedom, and (4) generate a dynamical (or canonical) coarse graining or refining of the underlying discretization. To systematically explore such local moves and their implications in the quantum theory, this article suitably expands the quantum formalism for global evolution moves, constructed in Paper I [P. A. Höhn, "Quantization of systems with temporally varying discretization. I. Evolving Hilbert spaces," J. Math. Phys. 55, 083508 (2014); e-print arXiv:1401.6062 [gr-qc

40Ar/39Ar ages for the fossil-bearing Gyeongsang Supergroup in South Korea

NASA Astrophysics Data System (ADS)

Chang, S. C.; Hemming, S. R.

2016-12-01

Since the 1970s, abundant vertebrate fossils have been documented from the Cretaceous Gyeongsang Supergroup in the Gyeongsang Basin and some small nearby basins of the Korean Peninsula, including dinosaurs, pterosaurs, crocodilians, turtles and fish. In addition to body fossils, well-preserved dinosaur, bird and pterosaur tracks have been found from these formations. Well-preserved and extensive vertebrate ichnofaunas from the Gyeongsang Supergroup represent the largest known concentration of Cretaceous vertebrate track sites reported from the Asian continent. Determining the age of the Gyeongsang Supergroup is critical to understanding several fundamental questions related to evolution and paleo-biogeography. However, limited radioisotopic studies for the Gyeongsang Supergroup have been previously reported. Additionally, the large uncertainties of previous data and the incomplete stratigraphic description of the samples limit their value for high-resolution chronostratigraphy. In this study, we aim to establish high-precision 40Ar/39Ar ages for two well-known tuffs from the middle and the upper part of the Gyeongsang Supergroup, and one rhyolite from the uppermost Gyeongsang Supergroup. Our preliminary 40Ar/39Ar data for the Kusandong Tuff indicates that the middle part of the Gyeongsang Supergroup is 78-82 Ma. This is consistent with the hypothesized extension of the Jehol biota into Korea and the preliminary results suggest that refinement of the time scale for these strata is a practical goal. The Gyeongsang Supergroup sample has great potential for substantially increasing our knowledge of Mesozoic terrestrial ecosystems.

Stereoscopic augmented reality for laparoscopic surgery.

PubMed

Kang, Xin; Azizian, Mahdi; Wilson, Emmanuel; Wu, Kyle; Martin, Aaron D; Kane, Timothy D; Peters, Craig A; Cleary, Kevin; Shekhar, Raj

2014-07-01

Conventional laparoscopes provide a flat representation of the three-dimensional (3D) operating field and are incapable of visualizing internal structures located beneath visible organ surfaces. Computed tomography (CT) and magnetic resonance (MR) images are difficult to fuse in real time with laparoscopic views due to the deformable nature of soft-tissue organs. Utilizing emerging camera technology, we have developed a real-time stereoscopic augmented-reality (AR) system for laparoscopic surgery by merging live laparoscopic ultrasound (LUS) with stereoscopic video. The system creates two new visual cues: (1) perception of true depth with improved understanding of 3D spatial relationships among anatomical structures, and (2) visualization of critical internal structures along with a more comprehensive visualization of the operating field. The stereoscopic AR system has been designed for near-term clinical translation with seamless integration into the existing surgical workflow. It is composed of a stereoscopic vision system, a LUS system, and an optical tracker. Specialized software processes streams of imaging data from the tracked devices and registers those in real time. The resulting two ultrasound-augmented video streams (one for the left and one for the right eye) give a live stereoscopic AR view of the operating field. The team conducted a series of stereoscopic AR interrogations of the liver, gallbladder, biliary tree, and kidneys in two swine. The preclinical studies demonstrated the feasibility of the stereoscopic AR system during in vivo procedures. Major internal structures could be easily identified. The system exhibited unobservable latency with acceptable image-to-video registration accuracy. We presented the first in vivo use of a complete system with stereoscopic AR visualization capability. This new capability introduces new visual cues and enhances visualization of the surgical anatomy. The system shows promise to improve the precision and expand the capacity of minimally invasive laparoscopic surgeries.

High-precision 40Ar/39Ar age for the Jehol Biota

NASA Astrophysics Data System (ADS)

Chang, S.; Zhang, H.; Renne, P. R.; Fang, Y.

2008-12-01

Abundant fossils of the terrestrial Jehol Biota, including plants, insects, dinosaurs, birds, mammals and freshwater invertebrates, were discovered from the Yixian Formation and the overlying Jiufotang Formation in Inner Mongolia, Hebei Province and Liaoning Province, northeastern China. Because of the exceptional preservation of fossils, the Jehol Biota is one of the most important Mesozoic fossil outcrops and referred to as a "Mesozoic Pompeii". The Jehol Biota has provided a rare opportunity to address questions about the origin of birds, the evolution of feathers and flight, the early diversification of angiosperms and the timing of the radiation of placental mammals. The Tuchengzi Formation, which lies unconformably just below the Yixian Formation and consists mainly of variegated sandstones, is less fossiliferous than the two overlying formations. However, dinosaur tracks, silicified wood and compressed plants are found in this formation. A systematic 40Ar/39Ar dating of the Yixian and the Jiufotang formations was undertaken to provide a framework for understanding the timing and duration of the Jehol Biota and evolutionary events represented within it. Furthermore, determining the absolute age of the Tuchengzi Formation provides information to interpret abundant dinosaur tracks within and provide better age constrains for the beginning of the Jehol Biota. Here we present robust high-precision 40Ar/39Ar data for six tuff samples and two basalt samples collected from the Tuchengzi, the Yixian and the Jiufotang formations near the classic outcrops in western Liaoning, NE China. We obtain an age of 139.5 ± 1.0 Ma for the uppermost Tuchengzi Formation, an age of 129.7 ± 0.5 Ma for a basaltic lava from the bottom of the Yixian Formation and an age of 122.1 ± 0.3 Ma for a tuff from the base of the overlying Jiufotang Formation. Our data indicate that the Yixian Formation was deposited during the Early Cretaceous, the Barremian to early Aptian, within a time span of 7 Ma. Because of the systematic sampling and the high quality of our data, these results contribute the most accurate age calibration yet of the Jehol Biota within the Yixian Formation and the overlying Jiufotang Formation, providing significant calibration for the evolution of early angiosperms, primitive birds and feathered dinosaurs.

Thermal decomposition and oxidation of CH3OH.

PubMed

Lee, Pei-Fang; Matsui, Hiroyuki; Xu, Ding-Wei; Wang, Niann-Shiah

2013-01-24

Thermal decomposition of CH(3)OH diluted in Ar has been studied by monitoring H atoms behind reflected shock waves of 100 ppm CH(3)OH + Ar. The total decomposition rate k(1) for CH(3)OH + M → products obtained in this study is expressed as, ln(k(1)/cm(3) molecule(-1) s(-1)) = -(14.81 ± 1.22) - (38.86 ± 1.82) × 10(3)/T, over 1359-1644 K. The present result on k(1) is indicated to be substantially smaller than the extrapolation of the most of the previous experimental data but consistent with the published theoretical results [Faraday Discuss. 2002, 119, 191-205 and J. Phys. Chem. A 2007, 111, 3932-3950]. Oxidation of CH(3)OH has been studied also by monitoring H atoms behind shock waves of (0.35-100) ppm CH(3)OH + (100-400) ppm O(2) + Ar. For the low concentration CH(3)OH (below 10 ppm) + O(2) mixtures, the initial concentration of CH(3)OH is evaluated by comparing evolutions of H atoms in the same concentration of CH(3)OH with addition of 300 ppm H(2) diluted in Ar. The branching fraction for CH(3)OH + Ar → (1)CH(2) + H(2)O + Ar has been quantitatively evaluated from this comparative measurements with using recent experimental result on the yield of H atoms in the reaction of (1,3)CH(2) + O(2) [J. Phys. Chem. A 2012, 116, 9245-9254]; i.e., the branching fraction for the above reaction is evaluated as, φ(1a) = 0.20 ± 0.04 at T = 1880-2050 K, in the 1.3 and 3.5 ppm CH(3)OH + 100 ppm O(2) samples. An extended reaction mechanism for the pyrolysis and oxidation of CH(3)OH is constructed based on the results of the present study combined with the oxidation mechanism of natural gas [GRI-Mech 3.0]; evolution of H atoms can be predicted very well with this new reaction scheme over a wide concentration range for the pyrolysis (0.36-100 ppm CH(3)OH), and oxidation (0.36-100 ppm CH(3)OH + 100/400 ppm O(2)) of methanol.

Comparative molecular field analysis of fenoterol derivatives: A platform towards highly selective and effective beta(2)-adrenergic receptor agonists.

PubMed

Jozwiak, Krzysztof; Woo, Anthony Yiu-Ho; Tanga, Mary J; Toll, Lawrence; Jimenez, Lucita; Kozocas, Joseph A; Plazinska, Anita; Xiao, Rui-Ping; Wainer, Irving W

2010-01-15

To use a previously developed CoMFA model to design a series of new structures of high selectivity and efficacy towards the beta(2)-adrenergic receptor. Out of 21 computationally designed structures 6 compounds were synthesized and characterized for beta(2)-AR binding affinities, subtype selectivities and functional activities. the best compound is (R,R)-4-methoxy-1-naphthylfelnoterol with K(i)beta(2)-AR=0.28microm, K(i)beta(1)-AR/K(i)beta(2)-AR=573, EC(50cAMP)=3.9nm, EC(50cardio)=16nm. The CoMFA model appears to be an effective predictor of the cardiomocyte contractility of the studied compounds which are targeted for use in congestive heart failure. Copyright 2009 Elsevier Ltd. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kiyota, Eduardo; Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas-SP; Sousa, Sylvia Morais de

Preliminary X-ray diffraction studies of apo maize aldose reductase at 2.0 Å resolution are reported. Maize aldose reductase (AR) is a member of the aldo-keto reductase superfamily. In contrast to human AR, maize AR seems to prefer the conversion of sorbitol into glucose. The apoenzyme was crystallized in space group P2{sub 1}2{sub 1}2{sub 1}, with unit-cell parameters a = 47.2, b = 54.5, c = 100.6 Å and one molecule in the asymmetric unit. Synchrotron X-ray diffraction data were collected and a final resolution limit of 2.0 Å was obtained after data reduction. Phasing was carried out by an automatedmore » molecular-replacement procedure and structural refinement is currently in progress. The refined structure is expected to shed light on the functional/enzymatic mechanism and the unusual activities of maize AR.« less

The mesoproterozoic Beaverhead impact structure and its tectonic setting, Montana-Idaho: 40Ar/39 and U-Pb isotopic constraints

USGS Publications Warehouse

Kellogg, K.S.; Snee, L.W.; Unruh, D.M.

2003-01-01

New 40Ar/39Ar and uranium-lead (U-Pb) zircon data from the Beaverhead impact structure, first identified by extensive shatter coning of Proterozoic quartzite and gneiss from the Beaverhead Mountains near the Montana-Idaho border, indicate that the structure formed at or after 900 Ma. The 40Ar/39Ar age spectra from fine-grained muscovite and biotite from a breccia zone in high-grade gneiss show significant argon loss but yield dates for highest-temperature steps that cluster between 899 and 908 Ma. The dated minerals probably formed by recrystallization of impact glass, so on both geologic and isotopic grounds, the dates probably represent the minimum age of impact. U-Pb data for zircons from the same breccia are strongly discordant and yield an upper intercept apparent age of 2464 ?? 56 Ma and a lower intercept apparent age of 779 ?? 69 Ma. Another brecciated gneiss about 7 km to the northeast that does not contain secondary mica does contain zircons that yield a concordant apparent age of 2455 ?? 9 Ma. Nearby gneiss that neither is brecciated nor contains shatter cones yields an apparent age of 2451 ?? 46 Ma. The 40Ar/39Ar results constrain the age of the shatter-coned quartzite and indicate that it is >900 Ma and possibly correlative with the Gunsight Formation of the Mesoproterozoic Lemhi Group. The upper intercept U-Pb age of ???2450 Ma from all three dated samples also shows that the Paleoproterozoic basement rocks of the area are among the youngest in the mostly Archean Wyoming province of North America. The impact site lies near the margin of the province, along the northeast-trending Great Falls tectonic zone, and the relatively young crustal age may reflect Early Proterozoic marginal accretion.

Nuclear and chloroplast microsatellite markers to assess genetic diversity and evolution in hazelnut species, hybrids and cultivars

USDA-ARS?s Scientific Manuscript database

The U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), National Clonal Germplasm Repository (NCGR) in Corvallis, Oregon, preserves more than 800 accessions of hazelnut (Corylus) including C. avellana cultivars and representatives of 10 other recognized shrub and tree species...

Aortic root segmentation in 4D transesophageal echocardiography

NASA Astrophysics Data System (ADS)

Chechani, Shubham; Suresh, Rahul; Patwardhan, Kedar A.

2018-02-01

The Aortic Valve (AV) is an important anatomical structure which lies on the left side of the human heart. The AV regulates the flow of oxygenated blood from the Left Ventricle (LV) to the rest of the body through aorta. Pathologies associated with the AV manifest themselves in structural and functional abnormalities of the valve. Clinical management of pathologies often requires repair, reconstruction or even replacement of the valve through surgical intervention. Assessment of these pathologies as well as determination of specific intervention procedure requires quantitative evaluation of the valvular anatomy. 4D (3D + t) Transesophageal Echocardiography (TEE) is a widely used imaging technique that clinicians use for quantitative assessment of cardiac structures. However, manual quantification of 3D structures is complex, time consuming and suffers from inter-observer variability. Towards this goal, we present a semiautomated approach for segmentation of the aortic root (AR) structure. Our approach requires user-initialized landmarks in two reference frames to provide AR segmentation for full cardiac cycle. We use `coarse-to-fine' B-spline Explicit Active Surface (BEAS) for AR segmentation and Masked Normalized Cross Correlation (NCC) method for AR tracking. Our method results in approximately 0.51 mm average localization error in comparison with ground truth annotation performed by clinical experts on 10 real patient cases (139 3D volumes).

T4-Like Genome Organization of the Escherichia coli O157:H7 Lytic Phage AR1▿†

PubMed Central

Liao, Wei-Chao; Ng, Wailap Victor; Lin, I-Hsuan; Syu, Wan-Jr; Liu, Tze-Tze; Chang, Chuan-Hsiung

2011-01-01

We report the genome organization and analysis of the first completely sequenced T4-like phage, AR1, of Escherichia coli O157:H7. Unlike most of the other sequenced phages of O157:H7, which belong to the temperate Podoviridae and Siphoviridae families, AR1 is a T4-like phage known to efficiently infect this pathogenic bacterial strain. The 167,435-bp AR1 genome is currently the largest among all the sequenced E. coli O157:H7 phages. It carries a total of 281 potential open reading frames (ORFs) and 10 putative tRNA genes. Of these, 126 predicted proteins could be classified into six viral orthologous group categories, with at least 18 proteins of the structural protein category having been detected by tandem mass spectrometry. Comparative genomic analysis of AR1 and four other completely sequenced T4-like genomes (RB32, RB69, T4, and JS98) indicated that they share a well-organized and highly conserved core genome, particularly in the regions encoding DNA replication and virion structural proteins. The major diverse features between these phages include the modules of distal tail fibers and the types and numbers of internal proteins, tRNA genes, and mobile elements. Codon usage analysis suggested that the presence of AR1-encoded tRNAs may be relevant to the codon usage of structural proteins. Furthermore, protein sequence analysis of AR1 gp37, a potential receptor binding protein, indicated that eight residues in the C terminus are unique to O157:H7 T4-like phages AR1 and PP01. These residues are known to be located in the T4 receptor recognition domain, and they may contribute to specificity for adsorption to the O157:H7 strain. PMID:21507986

Microstructural Evolution of Nanocrystalline Diamond Films Due to CH4/Ar/H2 Plasma Post-Treatment Process.

PubMed

Lin, Sheng-Chang; Yeh, Chien-Jui; Manoharan, Divinah; Leou, Keh-Chyang; Lin, I-Nan

2015-10-07

Plasma post-treatment process was observed to markedly enhance the electron field emission (EFE) properties of ultrananocrystalline diamond (UNCD) films. TEM examinations reveal that the prime factor which improves the EFE properties of these films is the coalescence of ultrasmall diamond grains (∼5 nm) forming large diamond grains about hundreds of nanometers accompanied by the formation of nanographitic clusters along the grain boundaries due to the plasma post-treatment process. OES studies reveal the presence of large proportion of atomic hydrogen and C2 (or CH) species, which are the main ingredients that altered the granular structure of the UNCD films. In the post-treatment process, the plasma interacts with the diamond films by a diffusion process. The recrystallization of diamond grains started at the surface region of the material, and the interaction zone increased with the post-treatment period. The entire diamond film can be converted into a nanocrystalline granular structure when post-treated for a sufficient length of time.

Kinetics of a plasma streamer ionization front

NASA Astrophysics Data System (ADS)

Taccogna, Francesco; Pellegrini, Fabrizio

2018-02-01

A streamer is a non-linear and non-local gas breakdown mode. Its large-scale coherent structures, such as the ionization front, are the final results of a hierarchical cascade starting from the single particle dynamics. Therefore, this phenomenon covers, by definition, different space and time scales. In this study, we have reproduced the ionization front formation and development by means of a particle-based numerical methodology. The physical system investigated concerns of a high-voltage ns-pulsed surface dielectric barrier discharge. Different reduced electric field regimes ranging from 50 to 500 Td have been considered for two gases: pure atomic Ar and molecular N2. Results have shown the detailed structure of the negative streamer: the leading edge, the head, the interior and the tail. Its dynamical evolution and the front propagation velocity have been calculated for the different cases. Finally, the deviation of the electron energy distribution function from equilibrium behavior has been pointed out as a result of a fast and very localized phenomenon.

Identification of the monobrominated derivative of Acid Red 52 (Food Red No. 106) in pickled vegetables.

PubMed

Ochi, Naoki; Okuda, Tetsuya; Fujii, Hisashi

2016-09-01

Two unknown dyes (purple and purplish-red) were detected by TLC in two pickled vegetable (sakura-zuke daikon) samples containing Acid Red 52 (AR) and New Coccine as food colorants. HPLC with diode-array detection and LC/MS analyses suggested that the purple dye is monobrominated AR and the purplish-red dye is its N-desethyl derivative, which would be generated mainly during sample preparation. For the identification of the purple dye, a reference compound was prepared by bromination of AR followed by isolation of the monobrominated AR, the structure of which was elucidated as 4'-brominated AR (4'BrAR) by LC/ToF-MS and (1)H-NMR spectroscopy. The purple dye was confirmed as 4'BrAR by comparison of its retention time, ultraviolet-visible spectrum and mass spectrum with those of the prepared reference compound. To our knowledge, this is the first report of the detection of 4'BrAR in foods.

Androgens and the male reproductive tract: an overview of classical roles and current perspectives.

PubMed

Patrão, Marilia T C C; Silva, Erick J R; Avellar, Maria Christina W

2009-11-01

Androgens are steroid hormones that play key roles in the development and maintenance of male phenotype and reproductive function. These hormones also affect the function of several non-reproductive organs, such as bone and skeletal muscle. Endogenous androgens exert most of their effects by genomic mechanisms, which involve hormone binding to the androgen receptor (AR), a ligand-activated transcription factor, resulting in the modulation of gene expression. AR-induced non-genomic mechanisms have also been reported. A large number of steroidal and non-steroidal AR-ligands have been developed for therapeutic use, including the treatment of male hypogonadism (AR agonists) and prostate diseases (AR antagonists), among other pathological conditions. Here, the AR gene and protein structure, mechanism of action and AR gene homologous regulation were reviewed. The AR expression pattern, its in vivo regulation and physiological relevance in the developing and adult testis and epididymis, which are sites of sperm production and maturation, respectively, were also presented.

Macromolecular recognition: Structural aspects of the origin of the genetic system

NASA Technical Reports Server (NTRS)

Rein, Robert; Barak, Dov; Luo, Ning; Zielinski, Theresa Julia; Shibata, Masayuki

1991-01-01

Theoretical simulation of prebiotic chemical processes is an invaluable tool for probing the phenomenon of evolution of life. Using computational and modeling techniques and guided by analogies from present day systems we, seek to understand the emergence of genetic apparatus, enzymatic catalysis and protein synthesis under prebiotic conditions. In one possible scenario, the RNA enzymatic reaction plays a key role in the emergence of the self-replicating and offers a clue to the onset of enzymatic catalysis prior to the existence of the protein biosynthetic machinery. Our ultimate goal is to propose a simple RNA segment which contains the specificity and catalytic activity of the contemporary RNA enzyme and which could emerge in a primordial chemical environment. To understand the mechanism of ribozyme catalyzed reactions, ab initio and semi-empirical (ZINDO) programs were used to investigate the reaction path of transphosphorylation. A special emphasis was placed on the possible catalytic and structural roles played by the coordinated magnesium cation. Both the inline and adjacent mechanisms of transphosphorylation have been studied. Another important aspect of this reaction is the identity of the functional groups which are essential for the acid base catalysis. The structural characteristics of the target helices, particularly a possible role of G center dot T pair, is under examination by molecular dynamics (MD) simulation technique. Modeling of the ancestral aminoacyl-tRNA synthetases (aRS) may provide important clues to the emergence of the genetic code and the protein synthetic machinery. Assuming that the catalytic function evolved before the elements of specific recognition of a particular amino acid, we are exploring the minimal structural requirements for the catalysis of tRNA aminoacylation. The molecular modeling system SYBYL was used for this study based on the high resolution crystallographic structures of the present day tyrosyl-adenylate:tyrRS and tRNA(Gln): ATP:glnRS complexes. The trinucleotide CCA of the 3'-end tRNA is placed into the active site pocket of tyrRS, based on the scheme of interaction between tRNA(Gln) and glnRS, and upon the stereochemistry of the tyrRS:tRNA:Tyr-AMP transition state. This provides a model of the non-specific recognition of a tRNA's 3'-end by an aRS, which might be similar to that of the ancestral aRS's. In the next step, modeling of the rest of the acceptor stem of tRNA (Tyr) with tyrRS is carried out.

Prognostic Impact of Calcium Score after Transcatheter Aortic Valve Implantation Performed With New Generation Prosthesis.

PubMed

Akodad, Mariama; Lattuca, Benoit; Agullo, Audrey; Macia, Jean-Christophe; Gandet, Thomas; Marin, Grégory; Iemmi, Anaïs; Vernhet, Hélène; Schmutz, Laurent; Nagot, Nicolas; Albat, Bernard; Cayla, Guillaume; Leclercq, Florence

2018-05-15

Calcium score (CS) is a well-known prognostic factor after transcatheter aortic valve implantation (TAVI) performed with first generation prosthesis but few data are available concerning new generation valves. The aim of this study was to evaluate if CS remains a prognostic factor after Sapien 3 and Evolut R valves implantation. Agatston CS was evaluated on multislice computed tomography before TAVI in 346 patients implanted with Sapien XT (n = 61), CoreValve (n = 57) devices, (group 1, n = 118), and with new generation Sapien 3 (n = 147), Evolut R (n = 81) prosthesis, (group 2, n = 228). Major adverse cardiovascular events and aortic regurgitation (AR) were evaluated at 1 month. The 2 groups were similar at baseline except for logistic Euroscore (20.1% in group 1 vs 15.0 % in group 2; p = 0.001), chronic renal failure (44.1% vs 37.2% respectively, p = 0.007) and preprocedural CS (4,092 ± 2,176 vs 3,682 ± 2,109 respectively, p = 0.022). In group 1, 28 patients (23.7%) had adverse clinical events vs 21 (9.2%) in group 2 (p <0.01). In multivariate analysis, a higher CS was predictive of adverse events in group 1 (5,785 ± 3,285 vs 3,565 ± 1,331 p <0.0001) but not in group 2 (p = 0.28). A higher CS was associated with AR in group 1 (6,234 ± 2711 vs 3,429 ± 1,505; p <0.001) and in patients implanted with an Evolut R device from group 2 (4,085 ± 3,645 vs 2,551 ± 1,356; p = 0.01). In conclusion, CS appears as an important prognostic factor of major events after TAVI with first generation valves but not with new generation devices. CS remains associated with AR only with new generation self-expandable Evolut R devices. Copyright © 2018 Elsevier Inc. All rights reserved.

A Comparative Study of the Eruptive and Non-eruptive Flares Produced by the Largest Active Region of Solar Cycle 24

NASA Astrophysics Data System (ADS)

Sarkar, Ranadeep; Srivastava, Nandita

2018-02-01

We investigate the morphological and magnetic characteristics of solar active region (AR) NOAA 12192. AR 12192 was the largest region of Solar Cycle 24; it underwent noticeable growth and produced 6 X-class flares, 22 M-class flares, and 53 C-class flares in the course of its disc passage. However, the most peculiar fact of this AR is that it was associated with only one CME in spite of producing several X-class flares. In this work, we carry out a comparative study between the eruptive and non-eruptive flares produced by AR 12192. We find that the magnitude of abrupt and permanent changes in the horizontal magnetic field and Lorentz force are significantly smaller in the case of the confined flares compared to the eruptive one. We present the areal evolution of AR 12192 during its disc passage. We find the flare-related morphological changes to be weaker during the confined flares, whereas the eruptive flare exhibits a rapid and permanent disappearance of penumbral area away from the magnetic neutral line after the flare. Furthermore, from the extrapolated non-linear force-free magnetic field, we examine the overlying coronal magnetic environment over the eruptive and non-eruptive zones of the AR. We find that the critical decay index for the onset of torus instability was achieved at a lower height over the eruptive flaring region, than for the non-eruptive core area. These results suggest that the decay rate of the gradient of overlying magnetic-field strength may play a decisive role to determine the CME productivity of the AR. In addition, the magnitude of changes in the flare-related magnetic characteristics are found to be well correlated with the nature of solar eruptions.

Long term evolution and internal architecture of high-energy banner ridges of Mer d'Iroise (Western Brittany, France) : interplay of sea-level, basement morphology, biogenic productivity and hydrodynamics

NASA Astrophysics Data System (ADS)

Le Roy, P., Sr.; Le Dantec, N.; Franzetti, M.; Delacourt, C.; Ehrhold, A.

2016-12-01

The recent completion of a coupled seismic and swath bathymetric survey, conducted across the Mer d'Iroise (Atlantic continental shelf, France), provided new data for the study of the long term evolution of deep tidal sand ridges. Three major banner sand ridges composed of biogenic sands were investigated: the Banc du Four, the Haut Fond d'Ouessant and the Banc d'Ar Men. Seismic interpretation reveals a compound internal architecture of these sand ridges with a sedimentary core forming the lower units interpreted to be shoreface deposits and overlain by sandwaves. Sandwave climbing, which combines progradation and accretion, is the major process controlling the growth of the ridges. The elevation of the preserved dune foresets reaches values of about 20 to 30 m and indicate a combination of giant dunes characterized by numerous steep (up to 20°) clinoforms corresponding to a high-energy depositional environment. All of the radiocarbon ages of the biogenic surficial deposits of the Banc du Four range from 10,036 to 2,748 cal years B.P. and suggest it has grown during the last sea-level rise. The apparent absence of recent surface deposits could be caused by a change in benthic biogenic productivity or the non-conservation of recent deposits. The multiphase accretion of the ridge is closely linked to the progressive flooding of the coastal promontories and straits that structured the igneous basement. A comparable evolutionary scheme is observed for the Haut-Fond d'Ouessant where a counter-clock wise migration of dunes characterizes the surface of the ridge. In contrast, the Banc d'Ar Men located above a regular basement displays a simpler structure with a consistent Northwestward migration of steep clinoforms. Therefore, the sand ridges of the Mer d'Iroise should be thought of as a representative example of large-scale high-energy banner banks controlled by interaction of sea-level, basement morphology, biogenic productivity, tidal and wave hydrodynamics.

Ductile strain rate recorded in the Symvolon syn-extensional plutonic body (Rhodope core complex, Greece)

NASA Astrophysics Data System (ADS)

Cirrincione, Rosolino; Fazio, Eugenio; Ortolano, Gaetano; Fiannacca, Patrizia; Kern, Hartmut; Mengel, Kurt; Pezzino, Antonino; Punturo, Rosalda

2016-04-01

The present contribution deals with quantitative microstructural analysis, which was performed on granodiorites of the syn-tectonic Symvolon pluton (Punturo et al., 2014) at the south-western boundary of the Rhodope Core Complex (Greece). Our purpose is the quantification of ductile strain rate achieved across the pluton, by considering its cooling gradient from the centre to the periphery, using the combination of a paleopiezometer (Shimizu, 2008) and a quartz flow law (Hirth et al., 2001). Obtained results, associated with a detailed cooling history (Dinter et al., 1995), allowed us to reconstruct the joined cooling and strain gradient evolution of the pluton from its emplacement during early Miocene (ca. 700°C at 22 Ma) to its following cooling stage (ca. 500-300°C at 15 Ma). Shearing temperature values were constrained by means of a thermodynamic approach based on the recognition of syn-shear assemblages at incremental strain; to this aim, statistical handling of mineral chemistry X-Ray maps was carried out on microdomains detected at the tails of porphyroclasts. Results indicate that the strain/cooling gradients evolve "arm in arm" across the pluton, as also testified by the progressive development of mylonitic fabric over the magmatic microstructures approaching the host rock. References • Dinter, D. A., Macfarlane, A., Hames, W., Isachsen, C., Bowring, S., and Royden, L. (1995). U-Pb and 40Ar/39Ar geochronology of the Symvolon granodiorite: Implications for the thermal and structural evolution of the Rhodope metamorphic core complex, northeastern Greece. Tectonics, 14 (4), 886-908. • Shimizu, I. (2008). Theories and applicability of grain size piezometers: The role of dynamic recrystallization mechanisms. Journal of Structural Geology, 30 (7), 899-917. • Hirth, G., Teyssier, C., and Dunlap, J. W. (2001). An evaluation of quartzite flow laws based on comparisons between experimentally and naturally deformed rocks. International Journal of Earth Sciences, 90 (1), 77-87. • Punturo, R., Cirrincione, R., Fazio, E., Fiannacca, P., Kern, H., Mengel, K., Ortolano G., and Pezzino, A. (2014). Microstructural, compositional and petrophysical properties of mylonitic granodiorites from an extensional shear zone (Rhodope Core complex, Greece). Geological Magazine, 151 (6), 1051-1071.

The Direct Inhibitory Effect of Dutasteride or Finasteride on Androgen Receptor Activity is Cell Line Specific

PubMed Central

Chhipa, Rishi Raj; Halim, Danny; Cheng, Jinrong; Zhang, Huan Yi; Mohler, James L.; Ip, Clement; Wu, Yue

2014-01-01

BACKGROUND Finasteride and dutasteride were developed originally as 5α-reductase inhibitors to block the conversion of testosterone to dihydrotestosterone (DHT). These drugs may possess off-target effects on the androgen receptor (AR) due to their structural similarity to DHT. METHODS A total of 4 human prostate cancer cell models were examined: LNCaP (T877A mutant AR), 22Rv1 (H874Y mutant AR), LAPC4 (wild type AR) and VCaP (wild type AR). Cells were cultured in 10% charcoal-stripped fetal bovine serum, either with or without DHT added to the medium. AR activity was evaluated using the ARE-luciferase assay or the expression of AR regulated genes. RESULTS Dutasteride was more potent than finasteride in interfering with DHT-stimulated AR signaling. Disruption of AR function was accompanied by decreased cell growth. Cells that rely on DHT for protection against death were particularly vulnerable to dutasteride. Different prostate cancer cell models exhibited different sensitivities to dutasteride and finasteride. LNCaP was most sensitive, LAPC4 and VCaP were intermediate, while 22Rv1 was least sensitive. Regardless of the AR genotype, if AR was transfected into drug-sensitive cells, AR was inhibited by drug treatment; and if AR was transfected into drug-resistant cells, AR was not inhibited. CONCLUSIONS The direct inhibitory effect of dutasteride or finasteride on AR signaling is cell line specific. Mutations in the ligand binding domain of AR do not appear to play a significant role in influencing the AR antagonistic effect of these drugs. Subcellular constituent is an important factor in determining the drug effect on AR function. PMID:23813737

The timing of eclogite facies metamorphism and migmatization in the Orlica–Śnieżnik complex, Bohemian Massif: Constraints from a multimethod geochronological study

USGS Publications Warehouse

Brocker, M.; Klemd, R.; Cosca, M.; Brock, W.; Larionov, A.N.; Rodionov, N.

2009-01-01

The Orlica–Śnieżnik complex (OSC) is a key geological element of the eastern Variscides and mainly consists of amphibolite facies orthogneisses and metasedimentary rocks. Sporadic occurrences of eclogites and granulites record high-pressure (HP) to ultrahigh-pressure (UHP) metamorphic conditions. A multimethod geochronological approach (40Ar–39Ar, Rb–Sr, Sm–Nd, U–Pb) has been used to gain further insights into the polymetamorphic evolution of eclogites and associated country rocks. Special attention was given to the unresolved significance of a 370- to 360 Ma age group that was repeatedly described in previous studies. Efforts to verify the accuracy of c.370 Ma K–Ar phengite and biotite dates reported for an eclogite and associated country-rock gneiss from the location Nowa Wieś suggest that these dates are meaningless, due to contamination with extraneous Ar. Extraneous Ar is also considered to be responsible for a significantly older 40Ar–39Ar phengite date of c. 455 Ma for an eclogite from the location Wojtowka. Attempts to further substantiate the importance of 370–360 Ma zircon dates as an indicator for a melt-forming high-temperature (HT) episode did not provide evidence in support of anatectic processes at this time. Instead, SHRIMP U–Pb zircon dating of leucosomes and leucocratic veins within both orthogneisses and (U)HP granulites revealed two age populations (490–450 and 345–330 Ma respectively) that correspond to protolith ages of the magmatic precursors and late Variscan anatexis. The results of this study further underline the importance of Late Carboniferous metamorphic processes for the evolution of the OSC that comprise the waning stages of HP metamorphism and lower pressure HT overprinting with partial melting. Eclogites and their country rocks provided no chronometric evidence for an UHP and ultrahigh-temperature episode at 387–360 Ma, as recently suggested for granulites from the OSC, based on Lu–Hf garnet ages (Anczkiewicz et al., 2007).

The magnetic evolution of AR 6555 which lead to two impulsive, readily compact, X-type flares

NASA Technical Reports Server (NTRS)

Ambastha, A.; Fontenla, J. M.; Kalman, B.; Csepura, GY.

1995-01-01

We study the evolution of the vector magnetic field and the sunspot motions observed in AR 6555 during 23-26 Mar. 1991. This region displays two locations of large magnetic shear that were also sites of flare activity. The first location produced two large (X-class) flares during the period covered by our observations. The second location had larger magnetic shear than the first, but produced only small (M- and C-class) flares during our observations. We study the evolution of the photospheric magnetic field in relation to the large flares in the first location. These flares occurred around the same included polarity, and have very similar characteristics (soft X-ray light curves, energies, etc.). However, the whole active region has changed substantially in the period between them. We found several characteristics of the region that appear related to the occurrence of these flares. (1) The flares occurred near regions of large magnetic 'shear,' but not at the locations of maximum shear or maximum field. (2) Potential field extrapolations of the observed field suggest that the topology changed, prior to the first of the two flares, in such a way that a null appeared in the coarse magnetic field. (3) This null was located close to both X-class flares, and remained in that location for a few days while the two flares were observed. (4) The flaring region has a pattern of vector field and sunspot motions in which material is 'squeezed' along the polarity inversion line. This pattern is very different from that usually associated with shearing arcades, but it is similar to that suggested previously by Fontenla and Davis. The vertical electric currents, inferred from the transverse field, are consistent with this pattern. (5) A major reconfiguration of the longitudinal field and the vertical electric currents occurred just prior to the first of the two flares. Both changes imply substantial variations of the magnetic structure of the region. On the basis of the available data we suggest that these changes made the flaring possible, and we develop a scenario that can explain the origin of the magnetic free energy that was released in these flares.

The Magnetic Evolution of AR 6555 which led to Two Impulsive, Relatively Compact, X-Type Flares

NASA Technical Reports Server (NTRS)

Fontenla, J. M.; Ambastha, A.; Kalman, B.; Csepura, Gy.

1995-01-01

We study the evolution of the vector magnetic field and the sunspot motions observed in AR 6555 during 1991 March 23-26. This region displays two locations of large magnetic shear that were also sites of flare activity. The first location produced two large (X-class) flares during the period covered by our observations. The second location had larger magnetic shear than the first but produced only small (M- and C-class) flares during our observations. We study the evolution of the photospheric magnetic field in relation to the large flares in the first location. These flares occurred around the same included polarity and have very similar characteristics (soft X-ray light curves, energies, etc,). However, the whole active region has changed substantially in the period between them. We found several characteristics of the region that appear related to the occurrence of these flares: (1) The flares occurred near regions of large magnetic 'shear' but not at the locations of maximum shear or maximum field. (2) Potential field extrapolations of the observed field suggest that the topology changed, prior to the first of the two flares, in such a way that a null appeared in the coarse magnetic field. (3) This null was located close to both X-class flares and remained in that location for a few days while the two flares were observed. (4) The flaring region has a pattern of vector field and sunspot motions in which material is 'squeezed' along the polarity inversion line. This pattern is very different from that usually associated with shearing arcades, but it is similar to that suggested previously by Fontenia and Davis. The vertical electric currents, inferred from the transverse field, are consistent with this pattern. (5) A major reconfiguration of the longitudinal field and the vertical electric currents occurred just prior to the first of the two flares. Both changes imply substantial variations of the magnetic structure of the region. On the basis of the available data we suggest that these changes made the flaring possible, and we develop a scenario that can explain the origin of the magnetic free-energy that was released in these flares.

Fake Statistically Valid Isotopic Ages in Impact Crater Geochronology

NASA Astrophysics Data System (ADS)

Jourdan, F.; Schmieder, M.; McWilliams, M. M.; Buchner, E.

2009-05-01

Precise dating of impact structures is crucial in several fundamental aspects, such as correlating effects on the bio- and geosphere caused by these catastrophic processes. Among the 176 listed impact structures [1], only 25 have a stated age precision better than ± 2%. Statistical investigation of these 25 ages showed that 11 ages are accurate, 12 are at best ambiguous, and 2 are not well characterized [2]. In this study, we show that even with statistically valid isotope ages, the age of an impact can be "missed" by several hundred millions of years. We present a new 40Ar/39Ar plateau age of 444 ± 4 Ma for the Acraman structure (real age ˜590 Ma [3]) and four plateau ages ranging from 81.07 ± 0.76 Ma to 74.6 ± 1.5 Ma for the Brent structure (estimated real age ˜453 Ma [4]). In addition, we discuss a 40Ar/39Ar plateau age of 994 ± 11, recently obtained by [5] on the Dhala structure (real age ˜2.0 Ga [5]). Despite careful sample preparations (single grain handpicking and HF leaching, in order to remove alteration phases), these results are much younger than the impact ages. Petrographic observations show that Acraman and Dhala grain separates all have an orange color and show evidence of alteration. This suggests that these ages are the results of hydrothermal events that triggered intensive 40Ar* loss and crystallization of secondary phases. More intriguing are the Brent samples (glassy melt rocks obtained from a drill core) that appeared very fresh under the microscope. The Brent glass might be a Cretaceous pseudotachylite generated by a late adjustment of the structure and/or by a local earthquake. Because we know the approximate age of the craters with stratigraphic evidences, these outliers are easy to identify. However, this is a red flag for any uncritical interpretation of isotopic ages (including e.g., 40Ar/39Ar, U/Pb, or U-Th/He [6]). In this paper, we encourage a multi-technique approach (i.e., isotopic, stratigraphic, paleogeographic [7,8]) and cross- calibrations in order to obtain both accurate and precise impact ages. [1] Earth Impact Database, Univ. New Brunswick, Canada (accessed Feb 28, 2009), [2] Jourdan et al., submitted to EPSL, [3] Baldwin et al., AJES 1991, [4] Grieve, Impact structures in Canada, GEOText 5, Geol. Assoc. Canada, 2006, [5] Jourdan et al., LPSC 39, 2008., [6] van Soest et al., LPSC 40, 2009, [7] Schmieder et al., Geol. Mag. 145, 2008, [8] Buchner et al., LPSC 40, 2009.

40Ar/39Ar and K-Ar data bearing on the metamorphic and tectonic history of western New England.

USGS Publications Warehouse

Sutter, J.F.; Ratcliffe, N.M.; Mukasa, S.B.

1985-01-01

40Ar/39Ar ages of coexisting biotite and hornblende from Proterozoic Y gneisses of the Berkshire and Green Mt massifs, as well as 40Ar/39Ar and K/Ar mineral and whole-rock ages from Palaeozoic metamorphic rocks, suggest that the thermal peaks for the dominant metamorphic recrystallization in western New England occurred 465 + or - 5 m.y. (Taconian). 40Ar/39Ar age data from a poorly-defined terrain along the eastern strip of the area suggests that the area has been retrograded during a metamorphism that peaked at least 376 + or - 5 m.y. (Acadian). Available age and petrological data from western New England indicate the presence of at least three separate metamorphic-structure domains of Taconic age: 1) a small area of relict high-P and low-T metamorphism, 2) a broad area of normal Barrovian metamorphism from chlorite to garnet grade characterized by a gentle metamorphic gradient and, 3) a rather narrow belt of steep-gradient, Barrovian series metamorphic rocks. Areas of maximum metamorphic intensity within the last domain coincide with areas of maximum crustal thickening in the later stage of Taconic orogeny. -L.di H

Carrier transport and emission efficiency in InGaN quantum-dot based light-emitting diodes

NASA Astrophysics Data System (ADS)

Barettin, Daniele; Auf der Maur, Matthias; di Carlo, Aldo; Pecchia, Alessandro; Tsatsulnikov, Andrei F.; Lundin, Wsevolod V.; Sakharov, Alexei V.; Nikolaev, Andrei E.; Korytov, Maxim; Cherkashin, Nikolay; Hÿtch, Martin J.; Karpov, Sergey Yu

2017-07-01

We present a study of blue III-nitride light-emitting diodes (LEDs) with multiple quantum well (MQW) and quantum dot (QD) active regions (ARs), comparing experimental and theoretical results. The LED samples were grown by metalorganic vapor phase epitaxy, utilizing growth interruption in the hydrogen/nitrogen atmosphere and variable reactor pressure to control the AR microstructure. Realistic configuration of the QD AR implied in simulations was directly extracted from HRTEM characterization of the grown QD-based structures. Multi-scale 2D simulations of the carrier transport inside the multiple QD AR have revealed a non-trivial pathway for carrier injection into the dots. Electrons and holes are found to penetrate deep into the multi-layer AR through the gaps between individual QDs and get into the dots via their side edges rather than via top and bottom interfaces. This enables a more homogeneous carrier distribution among the dots situated in different layers than among the laterally uniform quantum well (QWs) in the MQW AR. As a result, a lower turn-on voltage is predicted for QD-based LEDs, as compared to MQW ones. Simulations did not show any remarkable difference in the efficiencies of the MQW and QD-based LEDs, if the same recombination coefficients are utilized, i.e. a similar crystal quality of both types of LED structures is assumed. Measurements of the current-voltage characteristics of LEDs with both kinds of the AR have shown their close similarity, in contrast to theoretical predictions. This implies the conventional assumption of laterally uniform QWs not to be likely an adequate approximation for the carrier transport in MQW LED structures. Optical characterization of MQW and QD-based LEDs has demonstrated that the later ones exhibit a higher efficiency, which could be attributed to better crystal quality of the grown QD-based structures. The difference in the crystal quality explains the recently observed correlation between the growth pressure of LED structures and their efficiency and should be taken into account while further comparing performances of MQW and QD-based LEDs. In contrast to experimental results, our simulations did not reveal any advantages of using QD-based ARs over the MQW ones, if the same recombination constants are assumed for both cases. This fact demonstrates importance of accounting for growth-dependent factors, like crystal quality, which may limit the device performance. Nevertheless, a more uniform carrier injection into multi-layer QD ARs predicted by modeling may serve as the basis for further improvement of LED efficiency by lowering carrier density in individual QDs and, hence, suppressing the Auger recombination losses.

Carrier transport and emission efficiency in InGaN quantum-dot based light-emitting diodes.

PubMed

Barettin, Daniele; Auf der Maur, Matthias; di Carlo, Aldo; Pecchia, Alessandro; Tsatsulnikov, Andrei F; Lundin, Wsevolod V; Sakharov, Alexei V; Nikolaev, Andrei E; Korytov, Maxim; Cherkashin, Nikolay; Hÿtch, Martin J; Karpov, Sergey Yu

2017-07-07

We present a study of blue III-nitride light-emitting diodes (LEDs) with multiple quantum well (MQW) and quantum dot (QD) active regions (ARs), comparing experimental and theoretical results. The LED samples were grown by metalorganic vapor phase epitaxy, utilizing growth interruption in the hydrogen/nitrogen atmosphere and variable reactor pressure to control the AR microstructure. Realistic configuration of the QD AR implied in simulations was directly extracted from HRTEM characterization of the grown QD-based structures. Multi-scale 2D simulations of the carrier transport inside the multiple QD AR have revealed a non-trivial pathway for carrier injection into the dots. Electrons and holes are found to penetrate deep into the multi-layer AR through the gaps between individual QDs and get into the dots via their side edges rather than via top and bottom interfaces. This enables a more homogeneous carrier distribution among the dots situated in different layers than among the laterally uniform quantum well (QWs) in the MQW AR. As a result, a lower turn-on voltage is predicted for QD-based LEDs, as compared to MQW ones. Simulations did not show any remarkable difference in the efficiencies of the MQW and QD-based LEDs, if the same recombination coefficients are utilized, i.e. a similar crystal quality of both types of LED structures is assumed. Measurements of the current-voltage characteristics of LEDs with both kinds of the AR have shown their close similarity, in contrast to theoretical predictions. This implies the conventional assumption of laterally uniform QWs not to be likely an adequate approximation for the carrier transport in MQW LED structures. Optical characterization of MQW and QD-based LEDs has demonstrated that the later ones exhibit a higher efficiency, which could be attributed to better crystal quality of the grown QD-based structures. The difference in the crystal quality explains the recently observed correlation between the growth pressure of LED structures and their efficiency and should be taken into account while further comparing performances of MQW and QD-based LEDs. In contrast to experimental results, our simulations did not reveal any advantages of using QD-based ARs over the MQW ones, if the same recombination constants are assumed for both cases. This fact demonstrates importance of accounting for growth-dependent factors, like crystal quality, which may limit the device performance. Nevertheless, a more uniform carrier injection into multi-layer QD ARs predicted by modeling may serve as the basis for further improvement of LED efficiency by lowering carrier density in individual QDs and, hence, suppressing the Auger recombination losses.

Structure-bias relationships for fenoterol stereoisomers in six molecular and cellular assays at the β2-adrenoceptor.

PubMed

Reinartz, Michael T; Kälble, Solveig; Littmann, Timo; Ozawa, Takeaki; Dove, Stefan; Kaever, Volkhard; Wainer, Irving W; Seifert, Roland

2015-01-01

Functional selectivity is well established as an underlying concept of ligand-specific signaling via G protein-coupled receptors (GPCRs). Functionally, selective drugs could show greater therapeutic efficacy and fewer adverse effects. Dual coupling of the β2-adrenoceptor (β2AR) triggers a signal transduction via Gsα and Giα proteins. Here, we examined 12 fenoterol stereoisomers in six molecular and cellular assays. Using β2AR-Gsα and β2AR-Giα fusion proteins, (R,S')- and (S,S')-isomers of 4'-methoxy-1-naphthyl-fenoterol were identified as biased ligands with preference for Gs. G protein-independent signaling via β-arrestin-2 was disfavored by these ligands. Isolated human neutrophils constituted an ex vivo model of β2AR signaling and demonstrated functional selectivity through the dissociation of cAMP accumulation and the inhibition of formyl peptide-stimulated production of reactive oxygen species. Ligand bias was calculated using an operational model of agonism and revealed that the fenoterol scaffold constitutes a promising lead structure for the development of Gs-biased β2AR agonists.

Extracting Spectroscopic Factors of Argon Isotopes from Transfer Reactions

NASA Astrophysics Data System (ADS)

Manfredi, Juan; Tsang, M. B.; Lynch, W. G.; Brown, K. W.; Cerizza, G.; Barney, J.; Estee, J.; Loelius, C.; Sweany, S.; Anderson, C.; Setiawan, H.; Winkelbauer, J.; Smith, K.; Lee, J.; Xu, Z.; Rogers, A.; Pruitt, C.; Chajecki, Z.; Chen, G.; Langer, C.; Xiao, Z.; Li, Z.; Niu, C.

2017-09-01

A spectroscopic factor (SF) quantifies the single particle structure of a given state in a nucleus. There is a discrepancy in extracted SF's between studies that use transfer reactions and those that use knockout reactions. Resolving this discrepancy is important both for understanding reaction probes as well as constraining nuclear structure theory. Kinematically complete measurements of the transfer reactions 34Ar(p,d) and 46Ar(p,d) were performed at the National Superconducting Cyclotron Laboratory. The same beam energy (70 MeV/u) was used as in a previous knockout measurement to account for energy dependence in the relevant optical potentials. Preliminary results will be presented. In addition, findings from measurement of the two-neutron transfer reactions 34Ar(p,t) and 4 6 Ar(p,t) will be discussed. This work was supported by the NSF (PHY 1565546) and the DOE NNSA Stewardship Science Graduate Fellowship.

Tectonic controls on rift basin morphology: Evolution of the northern Malawi (Nyasa) rift

NASA Technical Reports Server (NTRS)

Ebinger, C. J.; Deino, A. L.; Tesha, A. L.; Becker, T.; Ring, U.

1993-01-01

Radiometric (K-Ar and Ar-40/Ar-39) age determinations of volcanic and volcaniclastic rocks, combined with structural, gravity, and seismic reflection data, are used to constrain the age of sedimentary strata contained within the seismically and volcanically active northern Malawi (Nyasa) rift and to characterize changes in basin and flank morphologies with time. Faulting and volcanism within the Tukuyu-Karonga basin began at approximately 8.6 Ma, when sediments were deposited in abroad, initially asymmetric lake basin bounded on its northeastern side by a border fault system with minor topographic relief. Extensions, primarily by a slip along the border fault, and subsequent regional isostatic compensation led to the development of a 5-km-deep basin bounded by broad uplifted flanks. Along the low-relief basin margin opposite border fault, younger stratigraphic sequences commonly onlap older wedge-shaped sequences, although their internal geometry is often progradational. Intrabasinal faulting, flankuplift, and basaltic and felsic volcanism from centers at the northern end of the basin became more important at about 2.5 Ma when cross-rift transfer faults developed to link the Tukuyu-Karonga basin to the Rukwa basin. Local uplift and volcanic construction at the northern end of the basin led to a southeastward shift in the basin's depocenter. Sequence boundaries are commonly erosional along this low-relief (hanging wall) margin and conformable in the deep lake basin. The geometry of stratigraphic sequences and the distribution of the erosion indicate that horizontal and vertical crustal movements both across and along the length of the rift basin led to changes in levels of the lake, irrespective of paleoclimatic fluctuations.

Real-time 3D image reconstruction guidance in liver resection surgery.

PubMed

Soler, Luc; Nicolau, Stephane; Pessaux, Patrick; Mutter, Didier; Marescaux, Jacques

2014-04-01

Minimally invasive surgery represents one of the main evolutions of surgical techniques. However, minimally invasive surgery adds difficulty that can be reduced through computer technology. From a patient's medical image [US, computed tomography (CT) or MRI], we have developed an Augmented Reality (AR) system that increases the surgeon's intraoperative vision by providing a virtual transparency of the patient. AR is based on two major processes: 3D modeling and visualization of anatomical or pathological structures appearing in the medical image, and the registration of this visualization onto the real patient. We have thus developed a new online service, named Visible Patient, providing efficient 3D modeling of patients. We have then developed several 3D visualization and surgical planning software tools to combine direct volume rendering and surface rendering. Finally, we have developed two registration techniques, one interactive and one automatic providing intraoperative augmented reality view. From January 2009 to June 2013, 769 clinical cases have been modeled by the Visible Patient service. Moreover, three clinical validations have been realized demonstrating the accuracy of 3D models and their great benefit, potentially increasing surgical eligibility in liver surgery (20% of cases). From these 3D models, more than 50 interactive AR-assisted surgical procedures have been realized illustrating the potential clinical benefit of such assistance to gain safety, but also current limits that automatic augmented reality will overcome. Virtual patient modeling should be mandatory for certain interventions that have now to be defined, such as liver surgery. Augmented reality is clearly the next step of the new surgical instrumentation but remains currently limited due to the complexity of organ deformations during surgery. Intraoperative medical imaging used in new generation of automated augmented reality should solve this issue thanks to the development of Hybrid OR.

Assessment of molecular diversity and population structure of the Ethiopian sorghum [Sorghum bicolor L. (Moench)] germplasm collection maintained by the USDA-ARS National Plant Germplasm System using SSR markers

USDA-ARS?s Scientific Manuscript database

The genetic diversity and population structure present in the Ethiopian sorghum collection maintained at the USDA-ARS National Plant Germplasm System (NPGS) has not been studied. In addition, 83% of the accessions in the Ethiopian collection lack passport information which has constrained their eval...

A Novel Virus Detected in Papillomas and Carcinomas of the Endangered Western Barred Bandicoot (Perameles bougainville) Exhibits Genomic Features of both the Papillomaviridae and Polyomaviridae▿

PubMed Central

Woolford, Lucy; Rector, Annabel; Van Ranst, Marc; Ducki, Andrea; Bennett, Mark D.; Nicholls, Philip K.; Warren, Kristin S.; Swan, Ralph A.; Wilcox, Graham E.; O'Hara, Amanda J.

2007-01-01

Conservation efforts to prevent the extinction of the endangered western barred bandicoot (Perameles bougainville) are currently hindered by a progressively debilitating cutaneous and mucocutaneous papillomatosis and carcinomatosis syndrome observed in captive and wild populations. In this study, we detected a novel virus, designated the bandicoot papillomatosis carcinomatosis virus type 1 (BPCV1), in lesional tissue from affected western barred bandicoots using multiply primed rolling-circle amplification and PCR with the cutaneotropic papillomavirus primer pairs FAP59/FAP64 and AR-L1F8/AR-L1R9. Sequencing of the BPCV1 genome revealed a novel prototype virus exhibiting genomic properties of both the Papillomaviridae and the Polyomaviridae. Papillomaviral properties included a large genome size (∼7.3 kb) and the presence of open reading frames (ORFs) encoding canonical L1 and L2 structural proteins. The genomic organization in which structural and nonstructural proteins were encoded on different strands of the double-stranded genome and the presence of ORFs encoding the nonstructural proteins large T and small t antigens were, on the other hand, typical polyomaviral features. BPCV1 may represent the first member of a novel virus family, descended from a common ancestor of the papillomaviruses and polyomaviruses recognized today. Alternatively, it may represent the product of ancient recombination between members of these two virus families. The discovery of this virus could have implications for the current taxonomic classification of Papillomaviridae and Polyomaviridae and can provide further insight into the evolution of these ancient virus families. PMID:17898069

The relationship between the change of magnetic energy and eruption behavior in NOAA AR 11429

NASA Astrophysics Data System (ADS)

Wang, R.; Liu, Y. D.

2013-12-01

We study the evolution of magnetic energy in an active region (AR) NOAA 11429, which produced a series of X/M class flares and fast coronal mass ejections (CMEs) in March 2012. In particular, this AR spawned double X-class flares (X5.4/X1.3) within a time internal of only 1 hr on March 7, which are associated with wide and fast CMEs with speeds of ~2000 km/s. A nonlinear force-free field extrapolation method is adopted to reconstruct the coronal magnetic field. We apply this method to a time series of 176 high-cadence vector magnetograms of the AR acquired by the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory (HMI/SDO), which span a time interval of 1.5 days. We investigate the budgets of the free magnetic energy and relative magnetic helicity. We find that there exist some relations between the changes of magnetic energy and flare magnitudes. Compared with previous studies, our results indicate that the magnetic energy decrease occurs before the flare and CME launch time. We will also combine images from the Atmospheric Imaging Assembly (AIA) to further explore the detailed process of the eruptions.

Androgen receptor and monoamine oxidase polymorphism in wild bonobos

PubMed Central

Garai, Cintia; Furuichi, Takeshi; Kawamoto, Yoshi; Ryu, Heungjin; Inoue-Murayama, Miho

2014-01-01

Androgen receptor gene (AR), monoamine oxidase A gene (MAOA) and monoamine oxidase B gene (MAOB) have been found to have associations with behavioral traits, such as aggressiveness, and disorders in humans. However, the extent to which similar genetic effects might influence the behavior of wild apes is unclear. We examined the loci AR glutamine repeat (ARQ), AR glycine repeat (ARG), MAOA intron 2 dinucleotide repeat (MAin2) and MAOB intron 2 dinucleotide repeat (MBin2) in 32 wild bonobos, Pan paniscus, and compared them with those of chimpanzees, Pan troglodytes, and humans. We found that bonobos were polymorphic on the four loci examined. Both loci MAin2 and MBin2 in bonobos showed a higher diversity than in chimpanzees. Because monoamine oxidase influences aggressiveness, the differences between the polymorphisms of MAin2 and MBin2 in bonobos and chimpanzees may be associated with the differences in aggression between the two species. In order to understand the evolution of these loci and AR, MAOA and MAOB in humans and non-human primates, it would be useful to conduct future studies focusing on the potential association between aggressiveness, and other personality traits, and polymorphisms documented in bonobos. PMID:25606465

Effects of HO-/MeO-PBDEs on androgen receptor: in vitro investigation and helix 12-involved MD simulation.

PubMed

Wang, Xiaoxiang; Yang, Huaiyu; Hu, Xinxin; Zhang, Xiaowei; Zhang, Qiansen; Jiang, Hualiang; Shi, Wei; Yu, Hongxia

2013-10-15

Hydroxylated and methoxylated polybrominated diphenyl ethers (HO-/MeO-PBDEs) have received increasing attention for their potential endocrine disrupting activities and widely environmental distribution. However, little information is available for the anti-androgenic activities, and the molecular mechanism of interactions with androgen receptor (AR) is not fully understood. In the present study, cell line assay and computational simulation were integrated to systematically explore the molecular mechanism of interactions between chemicals and AR. The metabolites with similar molecular structures exhibited different anti-androgenic activity while none of them showed androgenic activity. According to the multisystem molecular dynamics simulation, minute differences in the structure of ligands induced dramatic different conformational transition of AR-ligand binding domain (LBD). The Helix12 (H12) component of active ligands occupied AR-LBD could become stable, but this component continued to fluctuate in inactive ligands occupied AR-LBD. Settling time and reposition of H12 obtained in dynamics process are important factors governing anti-androgenic activities. The related settling times were characteristic of anti-androgenic potencies of the tested chemicals. Overall, in our study, the stable reposition of H12 is characterized as a computational mark for identifying AR antagonists from PBDE metabolites, or even other various environmental pollutants.

Cooperatively enhanced ionic hydrogen bonds in Cl-(CH3OH)(1-3)Ar clusters.

PubMed

Beck, Jordan P; Lisy, James M

2010-09-23

Infrared predissociation (IRPD) spectra of Cl−(CH3OH)1-3Ar and Cl-(CH3OD)1-3Ar were obtained in the OH and CH stretching regions. The use of methanol-d1 was necessary to distinguish between CH stretches and hydrogen-bonded OH features. The spectra of Cl-(CH3OH)2-3Ar show intense features at frequencies lower than the CH stretches, indicating structures with very strong hydrogen bonds. These strong hydrogen bonds arise from structures in which a Cl-···methanol ionic hydrogen bond is cooperatively enhanced by the presence of a second shell and, in the case of Cl-(CH3OH)3Ar, a third shell methanol. The strongest hydrogen bond is observed in the Cl-(CH3OH)3Ar spectrum at 2733 cm-1, shifted a remarkable -948 cm-1 from the neutral, gas-phase methanol value. Harmonic, ab initio frequency calculations are not adequate in describing these strong hydrogen bonds. Therefore, we describe a simple computational approach to better approximate the hydrogen bond frequencies. Overall, the results of this study indicate that high-energy isomers are very efficiently trapped using our experimental method of introducing Cl- into neutral, cold methanol-argon clusters.

Characterization of the cod (Gadus morhua) steroidogenic acute regulatory protein (StAR) sheds light on StAR gene structure in fish.

PubMed

Goetz, Frederick W; Norberg, Birgitta; McCauley, Linda A R; Iliev, Dimitar B

2004-03-01

The full-length cDNA for the cod (Gadus morhua) StAR was cloned by RT-PCR and library screening using ovarian RNA. From the library screening, 2 size classes of cDNA were obtained; a 1577 bp cDNA (cStAR1) and a 2851 bp cDNA (cStAR2). The cStAR1 cDNA presumably encodes a protein of 286 amino acids. The cStAR2 cDNA was composed of 6 separated sequences that contained all of the coding regions of cStAR1 when added together, but also contained 5 noncoding regions not observed in cStAR1. Polymerase chain reactions of cod genomic DNA produced products slightly larger than cStAR2. The sequence of these products were the same as cStAR2 but revealed one additional noncoding region (intron). Thus, the fish StAR gene contains the same number of exons (7) and introns (6) as observed in mammals, but is approximately half the size of the mammalian gene. Using Northern analysis and RT-PCR, cStAR1 expression was observed only in testes, ovaries and head kidneys. Polymerase chain reaction products were also observed using cDNA from steroidogenic tissues and primers designed to regions specific for cStAR2, indicating that cStAR2 is expressed in tissues and may account for the presence of larger transcripts observed on Northern blots.

Ar/Ar geochronology in the western Tianshan (northwestern China): from Carboniferous (ultra)high-pressure metamorphism and thrusting to Permian strike-slip deformation and fluid ingress

NASA Astrophysics Data System (ADS)

de Jong, K.; Wang, B.; Ruffet, G.; Shu, L. S.; Faure, M.

2012-04-01

The Tianshan belt (northwestern China) is a major tectonic element of the southern Central Asian Orogenic Belt that contains a number of ophiolitic mélanges and (ultra)high-pressure metamorphic belts formed after closure of oceanic and back-arc basins that resulted in terrane collisions. Deciphering its tectonic evolution is thus crucial for understanding the amalgamation of Central Asia. We produce robust 40Ar/39Ar laser-probe evidence that the Tianshan is a Late Palaeozoic (ultra)high-pressure metamorphic collision belt, not a Triassic one, as suggested by some SHRIMP zircon ages in recent literature. Instead of trying to date the peak pressure conditions we focused on 40Ar/39Ar analysis of white mica formed during retrograde recrystallisation when the (ultra)high-pressure metamorphic rocks of the Changawuzi-Kekesu complex were exhumed. Exhumation was coeval with their northward thrusting over the southern margin of the Yili terrane, the easternmost element of the Kazakhstan composite super-terrane, which produced main phase tectonic structures. The Yili terrane comprises a Proterozoic basement covered by metasediments, intruded by Early Carboniferous granites when it formed part of a continental margin arc. During the Permian deformation was partitioned in vertical brittle-ductile strike-slip fault zones that reactivated these suture zones and in which bimodal magmatism was concentrated. We also investigate the effects of these events on the isotopic ages of mica. 40Ar/39Ar laser-probe dating of white mica reveals that the strongest retrogressed blueschists immediately above the basal thrust fault of the Changawuzi-Kekesu belt gave the youngest plateau age of 316 ± 2 Ma (1σ). White mica in greenschist-facies metamorphic quartzite from the ductilely deformed metasedimentary cover of the Yili terrane's crystalline basement, taken at about 1 km below the thrust contact with the overlying Changawuzi-Kekesu belt, yielded a plateau age of 323 ± 1 Ma (1σ). Elsewhere, such metasediments yielded plateau ages (1σ) of 253 ± 1 (muscovite) and 252 ± 1 (biotite) Ma, whereas biotite from an undeformed ca. 340 Ma-old granite intruding the Yili terrane's southern margin gave a 263 ± 1 Ma plateau age (1σ). The 263-252-Ma-old samples were taken between 2 and 5 km across strike from the Permian Qingbulak-Nalati strike-slip fault, and within the 15-20 km wide zone with steeply dipping tectonic fabrics used by intruding Permian granites, and associated mineralisations. We interpret these Permian ages by recrystallisation of the mica by (late magmatic?) fluid flow channeled into these steep zones. Laser-probe dating of mylonite whole-rock samples from the North Tianshan - Main Tianshan strike-slip fault zone yielded 40Ar/39Ar spectra with step ages in the 255-285 Ma range, which date the movement on this ductile shear zone. The picture is emerging that a convective fluid system partly driven by magmatic heat, existed in a strongly fractured and weakened crust with an elevated heat flow, leading to regional-scale isotope resetting. We suggest that surprisingly young isotopic ages for early orogenic (ultra)high-pressure metamorphism are similarly due to fluid-mediated recrystallisation, leading to the erroneous view that the Tianshan is a Triassic orogenic belt.

Prostaglandins, steroids and reception (an attempt to model the structure of the active centers of adrenoreception).

PubMed

Podymov, V K; Piruzyan, L A; Gladkikh, S P; Kats, M M; Nizhnii, S V

1980-01-01

On the basis of numerous results of investigations on adrenergic systems, an orientational model of the adrenoreceptor (AR) is postulated. Its active center includes low-molecular-weight components--prostaglandins (PGE, PGF), steroids (cortisone, hydrocortisone), S+-adenosylmethionine, Ca, Mg, and Mn ions. Appraisal of the stereospecific characteristics of such a functional unit of AR explains the difference in the nature and magnitude of the effects of interaction of the catecholamines, their agonists and antagonists will the so-called alpha- and beta-AR. Depending on the organ or tissue in which the AR is located, its protein subunits comprise adenylcyclase (beta-AR) or Na,K-ATPase (alpha-AR). An obligatory component of the AR is catechol-O-methyltransferase. The model elaborated describes satisfactorily the molecular mechanisms of action of many pharmacological agents, explains why attempts to isolate and reconstruct the AR have proved fruitless, and gives grounds for rejecting the hypothesis that there exist steroid, prostaglandin, and purinergic receptors, linking the exceptionally high and diverse activity of these biologically active substances with their participation in adrenoreception among other reasons. A conception of the active centers of the AR as low-molecular-weight entities permits the explanation of such phenomena as the desensitization of the AR, the "interconversion" of beta-AR into alpha-AR with a change in the parameters of the medium, and certain components of the pathogenesis of bronchial asthma, etc.

Comparisons of lanthanide/actinide +2 ions in a tris(aryloxide)arene coordination environment† †Electronic supplementary information (ESI) available: Additional computational details, spectroscopic information, crystallographic data collection, structure solution, and refinement (PDF), X-ray diffraction details of compounds 1-Ln (Ln = Nd, Gd, Dy, and Er), 2-Nd, 2-Ln/3-Ln (Ln = Gd, Dy, Er), 2-Dy/4-Dy, and 5-Dy/6-Dy. CCDC (CIF, 1538987–1538995 and 1566075 for 2-Dy/3-Dy), and DFT-optimized structural coordinates for 2-Nd and 2-Gd. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c7sc02337e Click here for additional data file. Click here for additional data file. Click here for additional data file.

PubMed Central

Fieser, Megan E.; Palumbo, Chad T.; La Pierre, Henry S.; Halter, Dominik P.; Voora, Vamsee K.; Ziller, Joseph W.

2017-01-01

A new series of Ln3+ and Ln2+ complexes has been synthesized using the tris(aryloxide)arene ligand system, ((Ad,MeArO)3mes)3–, recently used to isolate a complex of U2+. The triphenol precursor, (Ad,MeArOH)3mes, reacts with the Ln3+ amides, Ln(NR2)3 (R = SiMe3), to form a series of [((Ad,MeArO)3mes)Ln] complexes, 1-Ln. Crystallographic characterization was achieved for Ln = Nd, Gd, Dy, and Er. The complexes 1-Ln can be reduced with potassium graphite in the presence of 2.2.2-cryptand (crypt) to form highly absorbing solutions with properties consistent with Ln2+ complexes, [K(crypt)][((Ad,MeArO)3mes)Ln], 2-Ln. The synthesis of the Nd2+ complex [K(crypt)][((Ad,MeArO)3mes)Nd], 2-Nd, was unambiguously confirmed by X-ray crystallography. In the case of the other lanthanides, crystals were found to contain mixtures of 2-Ln co-crystallized with either a Ln3+ hydride complex, [K(crypt)][((Ad,MeArO)3mes)LnH], 3-Ln, for Ln = Gd, Dy, and Er, or a hydroxide complex, [K(crypt)][((Ad,MeArO)3mes)Ln(OH)], 4-Ln, for Ln = Dy. A Dy2+ complex with 18-crown-6 as the potassium chelator, [K(18-crown-6)(THF)2][((Ad,MeArO)3mes)Dy], 5-Dy, was isolated as a co-crystallized mixture with the Dy3+ hydride complex, [K(18-crown-6)(THF)2][((Ad,MeArO)3mes)DyH], 6-Dy. Structural comparisons of 1-Ln and 2-Ln are presented with respect to their uranium analogs and correlated with density functional theory calculations on their electronic structures. PMID:29163894

Time scales of critical events around the Cretaceous-Paleogene boundary.

PubMed

Renne, Paul R; Deino, Alan L; Hilgen, Frederik J; Kuiper, Klaudia F; Mark, Darren F; Mitchell, William S; Morgan, Leah E; Mundil, Roland; Smit, Jan

2013-02-08

Mass extinctions manifest in Earth's geologic record were turning points in biotic evolution. We present (40)Ar/(39)Ar data that establish synchrony between the Cretaceous-Paleogene boundary and associated mass extinctions with the Chicxulub bolide impact to within 32,000 years. Perturbation of the atmospheric carbon cycle at the boundary likely lasted less than 5000 years, exhibiting a recovery time scale two to three orders of magnitude shorter than that of the major ocean basins. Low-diversity mammalian fauna in the western Williston Basin persisted for as little as 20,000 years after the impact. The Chicxulub impact likely triggered a state shift of ecosystems already under near-critical stress.

A Nanoflare-Based Cellular Automaton Model and the Observed Properties of the Coronal Plasma

NASA Technical Reports Server (NTRS)

Lopez-Fuentes, Marcelo; Klimchuk, James Andrew

2016-01-01

We use the cellular automaton model described in Lopez Fuentes and Klimchuk to study the evolution of coronal loop plasmas. The model, based on the idea of a critical misalignment angle in tangled magnetic fields, produces nanoflares of varying frequency with respect to the plasma cooling time. We compare the results of the model with active region (AR) observations obtained with the Hinode/XRT and SDOAIA instruments. The comparison is based on the statistical properties of synthetic and observed loop light curves. Our results show that the model reproduces the main observational characteristics of the evolution of the plasma in AR coronal loops. The typical intensity fluctuations have amplitudes of 10 percent - 15 percent both for the model and the observations. The sign of the skewness of the intensity distributions indicates the presence of cooling plasma in the loops. We also study the emission measure (EM) distribution predicted by the model and obtain slopes in log(EM) versus log(T) between 2.7 and 4.3, in agreement with published observational values.

A NANOFLARE-BASED CELLULAR AUTOMATON MODEL AND THE OBSERVED PROPERTIES OF THE CORONAL PLASMA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fuentes, Marcelo López; Klimchuk, James A., E-mail: lopezf@iafe.uba.ar

2016-09-10

We use the cellular automaton model described in López Fuentes and Klimchuk to study the evolution of coronal loop plasmas. The model, based on the idea of a critical misalignment angle in tangled magnetic fields, produces nanoflares of varying frequency with respect to the plasma cooling time. We compare the results of the model with active region (AR) observations obtained with the Hinode /XRT and SDO /AIA instruments. The comparison is based on the statistical properties of synthetic and observed loop light curves. Our results show that the model reproduces the main observational characteristics of the evolution of the plasmamore » in AR coronal loops. The typical intensity fluctuations have amplitudes of 10%–15% both for the model and the observations. The sign of the skewness of the intensity distributions indicates the presence of cooling plasma in the loops. We also study the emission measure (EM) distribution predicted by the model and obtain slopes in log(EM) versus log(T) between 2.7 and 4.3, in agreement with published observational values.« less

Overuse of diagnostic tools and medications in acute rhinosinusitis in Spain: a population-based study (the PROSINUS study)

PubMed Central

Jaume, Francesca; Quintó, Llorenç; Alobid, Isam; Mullol, Joaquim

2018-01-01

Objectives Acute rhinosinusitis (ARS) has a high incidence. Diagnosis is clinical, and evolution is mostly self-limited. The aim of this study was to describe the sociodemographic characteristics and use of diagnostic tools and medications in patients with ARS. Design This is a prospective observational study in real-life clinical practice. Setting Patients with clinical diagnosis of ARS (n=2610) were included from ear, nose and throat clinics in Spain. A second visit at resolution was done. Participants Patients were classified according to the duration of symptoms: viral ARS (≤10 days), postviral ARS (>10 days, ≤12 weeks) and chronic rhinosinusitis (>12 weeks). Main outcome measures Sociodemographic characteristics, symptoms, disease severity, quality of life (Sino-Nasal Outcome Test-16), used diagnostic tools and medications, and the management performed by primary care physicians (PCPs) and by otorhinolaryngologists (ORLs) were assessed. Results Of the patients 36% were classified as having viral ARS, 63% postviral ARS and 1% as chronic rhinosinusitis. Working in a poorly air-conditioned environment was a risk factor (OR: 2.26, 95% CI 1.27 to 4.04) in developing postviral ARS. A higher number of diagnostic tools (rhinoscopy/endoscopy: 80% vs 70%; plain X-ray: 70% vs 55%; CT scan: 22% vs 12%; P<0.0001) were performed in postviral than viral cases. PCPs performed more X-rays than ORLs (P<0.0001). Patients, more those with postviral than viral ARS, received a high number of medications (oral antibiotics: 76% vs 62%; intranasal corticosteroids: 54% vs 38%; antihistamines: 46% vs 31%; mucolytic: 48% vs 60%; P<0.0001). PCPs prescribed more antibiotics, antihistamines and mucolytics than ORLs (P<0.0068). More patients with postviral than viral ARS reported symptoms of potential complications (1.5% vs 0.4%; P=0.0603). Independently of prescribed medications, quality of life was more affected in patients with postviral (38.7±14.2 vs 36.0±15.3; P=0.0031) than those with viral ARS. ARS resolution was obtained after 6.04 (viral) and 16.55 (postviral) days, with intranasal corticosteroids being associated with longer (OR: 1.07, 95% 1.02 to 1.12) and phytotherapy with shorter (OR: 0.95, 95% CI 0.91 to 1.00) duration. Conclusions There is a significant overuse of diagnostic tools and prescribed medications, predominantly oral antibiotics, by PCPs and ORLs, for viral and postviral ARS. PMID:29391364

U-Pb zircon and 40Ar/39Ar geochronology of sericite from hydrothermal alteration zones: new constraints for the timing of Ediacaran gold mineralization in the Sukhaybarat area, western Afif terrane, Saudi Arabia

NASA Astrophysics Data System (ADS)

Harbi, Hesham M.; Ali, Kamal A.; McNaughton, Neal J.; Andresen, Arild

2018-04-01

The Sukhaybarat East and Red Hill deposits, in the northeastern part of the Arabian Shield, are mesothermal vein-type gold deposits hosted by late Cryogenian-Ediacaran intrusive rocks of the Idah suites (diorite, tonalite, granodiorite) and, at Sukhaybarat East, also by Ediacaran metasedimentary rocks. Gold mineralization comprises quartz-arsenopyrite veins (Sukhaybarat East), quartz-carbonate-pyrite veins (Red Hill), and subordinate gold-base metal sulfide veins. In the Red Hill deposit, alteration is complicated due to multiple overprinting hydrothermal events and is characteristically affected by pervasive, pink quartz-K-feldspar-hematite alteration which is overprinted by potassic alteration characterized by a quartz-biotite-carbonate-muscovite/sericite-rutile-apatite assemblage. This assemblage is associated with molybdenite veins which appear to form late in the paragenetic sequence and may represent either evolution of the ore fluid composition, or a later, unrelated mineralized fluids. Hydrothermal alteration at the Sukhaybarat East deposit is dominated by quartz-carbonate-sericite-arsenopyrite assemblages. Zircon from ore-hosting tonalite at Sukhaybarat East yields a U-Pb age of 629 ± 6 Ma, and biotite from the same rock gives an 40Ar/39Ar age of 622 ± 23 Ma. The 40Ar/39Ar age is within the uncertainty range for the U-Pb age of the host intrusion and is interpreted as a minimally disturbed cooling age for the tonalite. In the Red Hill area, granodiorite was emplaced at 615 ± 5 Ma, whereas muscovite/sericite separated from a mineralized sample of a quartz-carbonate-pyrite vein, that was overprinted by molybdenite-bearing veinlets, yields an 40Ar/39Ar age of 597 ± 8 Ma. We interpreted this age to represent the maximum age of the molybdenite mineralization and the probable minimum age of gold mineralization in the Red Hill deposit.

An application of the weighted horizontal magnetic gradient to solar compact and eruptive events

NASA Astrophysics Data System (ADS)

Korsós, M. B.; Ruderman, Michael S.; Erdélyi, R.

2018-01-01

We propose to apply the weighted horizontal magnetic gradient (WGM), introduced in Korsós et al., 2015, for analysing the pre-flare and pre-CME behaviour and evolution of Active Regions (ARs) using the SDO/HMI-Debrecen Data catalogue. To demonstrate the power of investigative capabilities of the WGM method, in terms of flare and CME eruptions, we studied two typical ARs, namely, AR 12158 and AR 12192. The choice of ARs represent canonical cases. AR 12158 produced an X1.6 flare with fast "halo" CME (vlinear = 1267 kms-1) while in AR 12192 there occurred a range of powerful X-class eruptions, i.e. X1.1, X1.6, X3.1, X1.0, X2.0 and X2.0-class energetic flares, interestingly, none with an accompanying CME. The value itself and temporal variation of WGM is found to possess potentially important diagnostic information about the intensity of the expected flare class. Furthermore, we have also estimated the flare onset time from the relationship of duration of converging and diverging motions of the area-weighted barycenters of two subgroups of opposite magnetic polarities. This test turns out not only to provide information about the intensity of the expected flare-class and the flare onset time but may also indicate whether a flare will occur with/without fast CME. We have also found that, in the case when the negative polarity barycenter has moved around and the positive one "remained" at the same coordinates preceding eruption, the flare occurred with fast "halo" CME. Otherwise, when both the negative and the positive polarity barycenters have moved around, the AR produced flares without CME. If these properties found for the movement of the barycenters are generic pre-cursors of CME eruption (or lack of it), identifying them may serve as an excellent pre-condition for refining the forecast of the lift-off of CMEs.

Repeated measurements of NT-pro-B-type natriuretic peptide, troponin T or C-reactive protein do not predict future allograft rejection in heart transplant recipients.

PubMed

Battes, Linda C; Caliskan, Kadir; Rizopoulos, Dimitris; Constantinescu, Alina A; Robertus, Jan L; Akkerhuis, Martijn; Manintveld, Olivier C; Boersma, Eric; Kardys, Isabella

2015-03-01

Studies on the prognostic value of serial biomarker assays for future occurrence of allograft rejection (AR) are scarce. We examined whether repeated measurements of NT-pro-B-type natriuretic peptide (NT-proBNP), troponin T (TropT) and C-reactive protein (CRP) predict AR. From 2005 to 2010, 77 consecutive heart transplantation (HTx) recipients were included. The NT-proBNP, TropT, and CRP were measured at 16 ± 4 (mean ± standard deviation) consecutive routine endomyocardial biopsy surveillance visits during the first year of follow-up. Allograft rejection was defined as International Society for Heart and Lung Transplantation (ISHLT) grade 2R or higher at endomyocardial biopsy. Joint modeling was used to assess the association between repeated biomarker measurements and occurrence of future AR. Joint modeling accounts for dependence among repeated observations in individual patients. The mean age of the patients at HTx was 49 ± 9.2 years, and 68% were men. During the first year of follow-up, 1,136 biopsies and concurrent blood samples were obtained, and 56 patients (73%) experienced at least one episode of AR. All biomarkers were elevated directly after HTx and achieved steady-state after ∼ 12 weeks, both in patients with or without AR. No associations were present between the repeated measurements of NT-proBNP, TropT, or CRP and AR both early (weeks 0-12) and late (weeks 13-52) in the course after HTx (hazard ratios for weeks 13-52: 0.96 (95% confidence interval, 0.55-1.68), 0.67 (0.27-1.69), and 1.44 (0.90-2.30), respectively, per ln[unit]). Combining the three biomarkers in one model also rendered null results. The temporal evolution of NT-proBNP, TropT, and CRP before AR did not predict occurrence of acute AR both in the early and late course of the first year after HTx.

Contribution of the 40Ar/39Ar method to improve Middle-Pleistocene archaeological/palaeontological sites from the Italian Peninsula

NASA Astrophysics Data System (ADS)

Nomade, Sebastien, ,, Dr.; Pereira, MSc. Alison; voinchet, Pierre, ,, Dr.; Bahain, Jean-Jacques, ,, Dr.; Aureli, Daniele, ,, Dr.; Arzarello, Marta, ,, Dr.; Anzidei, Anna-Paola, ,, Dr.; Biddittu, Italo, ,, Dr.; Bulgarelli, Maria-Grazia, ,, Dr.; Falguères, Christophe, ,, Dr.; Giaccio, Biagio, ,, Dr.; Guillou, Hervé, ,, Dr.; Manzi, Gorgio, ,, Dr.; Moncel, Marie-Hélène, ,, Dr.; Nicoud, Elisa, ,, Dr.; Pagli, Maria, ,, Dr.; Parenti, Fabio, ,, Dr.; Peretto, Carlo, ,, Dr.; Piperno, Marcello, ,, Dr.; Rocca, Roxane, ,, Dr.

2017-04-01

European Middle-Pleistocene archaeological and/or paleontological sites lack a unified and precise chronological framework. Despite recent efforts mostly focused on methods such as OSL, ESR/U-series or cosmogenic nuclides, the age of numerous sites from this period fundamentally still relies on qualitative and speculative palaeoenvironmental and/or palaeontological/palaeoanthropological considerations. The lack of robust chronologies, along with the scarcity of human fossils, prevent coherent correlations between European sites which in turn limits our understanding of human diffusion dynamics, understand techno-cultural evolution or correlate archaeological sites with palaeoclimatic and environmental records. With the goal of providing an accurate and precise chronological framework based on a multi-method approach, a research network including geochronologists, archaeologist and paleoanthropologists from various French and Italian institutions launched in 2010 a wide study of Middle-Pleistocene archaeological sites of central and southern Italy. This study combining the 39Ar/40Ar method with palaeo-dosimetric methods applied to European sites in the age range of 700 ka to 300 ka is unprecedented. In parallel, a large effort has been done to improve the regional Middle-Pleistocene tephrostratigraphic database through a massive application of both high-precision 40Ar/39Ar geochronological and geochemical investigations. We illustrate our approach and results in addressing several key-sites such as Notarchirico, Valle Giumentina; Ceprano-Campogrande and La Polledrara di Cecanibbio. The accurate and precise chronological framework we built permits us to replace all the investigated archaeological and palaeontological records into a coherent climatic and environmental context. Furthermore, our work provides the opportunity to compare lithic industries from a technical and evolutionary point of view within a homogeneous temporal frame. These preliminary results border the current limitations of the 40Ar/39Ar method and will guide expected advances to apply our approach to other European sites.

A tectonic linkage between the Rodelide orogen (Sierra Leone) and the St. Lucie metamorphic complex in the Florida subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dallmeyer, R.D.

1989-03-01

Hornblende concentrates prepared from cuttings from two deep test wells penetrating the complex display internally concordant {sup 40}Ar/{sup 39}Ar incremental-release spectra defining plateau ages of 510.8 {plus minus} 1.1 Ma and 513.1 {plus minus} 1.8 Ma, which are interpreted to date post-metamorphic cooling through temperatures required for intracrystalline argon retention. The Kasila Group constitutes the western segment of the Rokelide orogen in Sierra Leone. Four hornblende concentrations prepared for amphibolite within the Kasila Group yield {sup 40}Ar/{sup 39}Ar plateau ages of 505.0 {plus minus} 5.2, 508.2 {plus minus} 2.1, 510.5 {plus minus} 2.6, and 546.1 {plus minus} 6.8 Ma. Theymore » are interpreted to date post-metamorphic cooling through appropriate argon closure temperature following a ca. 550-560 Ma, Pan-African II phase of tectonothermal activity. A biotite concentrate from paragneiss within the Kasila Group displays an internally concordant {sup 40}/Ar{sup 39}Ar release spectrum defining a plateau age of 524.7 {plus minus} 1.3 Ma, which likely reflects slight contamination with extraneous (excess) argon. Muscovite from the Marampa Group yields a {sup 40}Ar/{sup 39}Ar plateau age of 561.1 {plus minus} 2.3 Ma, which is interpreted to date cooling through appropriate argon closure temperatures. Although these temperatures are generally considered to be lower than those for hornblenede, the muscovite records an older cooling age, suggesting that the Marampa Group experienced slightly earlier post-metamorphic uplift and cooling relative to the Kasila Group. Lithologic comparison combined with similarities in post-metamorphic thermal evolution suggest that the St. Lucie Metamorphic Complex originated within the Rockelide orogen. This and other lithotectonic elements of the Suwannee terrane appear to represent a fragment of Gondwana which accreted to Laurentia during late Paleozoic amalgamation of Pangea.« less

Structure and magnetic properties of Nd2Fe14B fine particles produced by spark erosion

NASA Astrophysics Data System (ADS)

Wan, H.; Berkowitz, A. E.

1994-11-01

At present Nd2Fe14B is the best permanent magnet because of its extremely high coercivity and energy product. Optimum properties of Nd2Fe14B magnets can be attained by producing single domain particles, and then aligning and compacting them. Due to the reactivity of the Nd constitutent, it is challenging to produce and handle a large amount of fine particles of this material. We have prepared fine particles of Nd2Fe14B by spark erosion with various dielectric media. Yield, size, size distribution, structure, and magnetic properties are discussed. The Nd2Fe14B particles were made by the sharker pot spark erosion method. Relaxation oscillators or a pulse generator were used to power the park erosion. Commercial Neomax 35 was employed as the primary material. The dielectric media were liquid Ar, Ar gas, and hydrocarbons, which provided an oxygen free environment. Structure and size were studied by transmission electron microscopy (TEM), scanning electron microscopy (SEM), and x-ray diffraction. Magnetic properties were measured by vibrating sample magnetometer (VSM) with temperatures in range of 4.2-1200 K. The particles produced in these three different dielectric media had different microstructures and crystal structures. The particles made in Ar gas were pure Nd2Fe14B phase. The particles made in liquid Ar were a mixture of amorphous and crystalline Nd2Fe14B, because the liquid Ar provided a much higher quench rate than Ar gas, which produced some amorphous Nd2Fe14B. Upon annealing, the amorphous particles became crystalline. The fine particles produced in hydrocarbons, such as pentane and dodecane, had more complex mixed phases, since the rare earth reacted with the hydrocarbons during the sparking process. The phases were NdC2, alpha-Fe, and amorphous and crystalline Nd2Fe14B. The effects of power parameters, such as voltage and capacitance, on particle size were investigated. Particle sizes from 20 nm to 50 microns were obtained.

Contemporaneous alkaline and tholeiitic magmatism in the Ponta Grossa Arch, Paraná-Etendeka Magmatic Province: Constraints from U-Pb zircon/baddeleyite and 40Ar/39Ar phlogopite dating of the José Fernandes Gabbro and mafic dykes

NASA Astrophysics Data System (ADS)

Almeida, Vidyã V.; Janasi, Valdecir A.; Heaman, Larry M.; Shaulis, Barry J.; Hollanda, Maria Helena B. M.; Renne, Paul R.

2018-04-01

We report the first high-precision ID-TIMS U-Pb baddeleyite/zircon and 40Ar/39Ar step-heating phlogopite age data for diabase and lamprophyre dykes and a mafic intrusion (José Fernandes Gabbro) located within the Ponta Grossa Arch, Brazil, in order to constrain the temporal evolution between Early Cretaceous tholeiitic and alkaline magmatism of the Paraná-Etendeka Magmatic Province. U-Pb dates from chemically abraded zircon data yielded the best estimate for the emplacement ages of a high Ti-P-Sr basaltic dyke (133.9 ± 0.2 Ma), a dyke with basaltic andesite composition (133.4 ± 0.2 Ma) and the José Fernandes Gabbro (134.5 ± 0.1 Ma). A 40Ar/39Ar phlogopite step-heating age of 133.7 ± 0.1 Ma from a lamprophyre dyke is identical within error to the U-Pb age of the diabase dykes, indicating that tholeiitic and alkaline magmatism were coeval in the Ponta Grossa Arch. Although nearly all analysed fractions are concordant and show low analytical uncertainties (± 0.3-0.9 Ma for baddeleyite; 0.1-0.4 Ma for zircon; 2σ), Pb loss is observed in all baddeleyite fractions and in some initial zircon fractions not submitted to the most extreme chemical abrasion treatment. The resulting age spread may reflect intense and continued magmatic activity in the Ponta Grossa Arch.

Iron-catalyzed oxidative biaryl cross-couplings via mixed diaryl titanates: significant influence of the order of combining aryl Grignard reagents with titanate.

PubMed

Liu, Kun Ming; Wei, Juan; Duan, Xin Fang

2015-03-18

The mixed diaryl titanates were used for the first time to modify the reactivity of two aryl Grignard reagents. Two titanate intermediates, Ar[Ar'Ti(OR)3]MgX and Ar'[ArTi(OR)3]MgX, formed via alternating the sequence of combining Grignard reagents with ClTi(OR)3 showed a significant reactivity difference. Taking advantage of such different reactivity, two highly structurally similar aryl groups could be facilely assembled through iron-catalyzed oxidative cross-couplings using oxygen as the oxidant.

In Situ UV-Laser Ablation 40Ar/39Ar Muscovite Thermochronology Reveals Excess Argon and 405-399 Ma Age for the Nordfjord-Sogn Detachment Zone, Hornelen region, Norway

NASA Astrophysics Data System (ADS)

Johnston, S. M.; Hacker, B. R.; Eide, E. A.; Hendriks, B.

2006-12-01

The Nordfjord-Sogn Detachment Zone (NSDZ) is a 2-6 km thick, normal-sense shear zone that juxtaposes the eclogite-bearing Western Gneiss Complex in its footwall with Devonian sediments in its hangingwall, and is widely cited as the primary structure responsible for the exhumation of the Norwegian ultrahigh-pressure (UHP) rocks. Critical to our understanding of this crustal-scale detachment, detailed thermochronology places essential constraints on the rates of exhumation and documents spatial variability in the timing of exhumation- related cooling. Regional thermochronology has shown that 40Ar/39Ar muscovite ages increase gradually from 405-390 Ma across the Western Gneiss Complex and into the lower part of the NSDZ, but at higher structural levels within the NSDZ, these ~400 Ma ages are mixed with an older population at 420-418 Ma. Although neither excess argon nor incomplete resetting of argon in these older samples has been ruled out, these results have been interpreted to suggest that extension and exhumation within the NSDZ may have initiated as early as 420 Ma. Here, we investigate these older 40Ar/39Ar muscovite ages by comparing resistance furnace (RF) ages from bulk muscovite separates with in situ UV-laser ablation ages from a suite of 6 samples that transect the NSDZ. RF spectra from 5 of the 6 analyzed samples yield plateau ages that range from 405-399 Ma; in situ ages of these same 5 samples reveal no age zonation within large grains and no differences in ages among texturally different grains. In contrast, the structurally highest sample yields a RF plateau age of 425±6 Ma, and in situ ages of 474-417 Ma in grain cores and c. 400 Ma in grain rims and small grains. On an inverse isochron diagram, these in situ ages define two distinct populations, with grain cores distributed along a line between an excess argon component of 40Ar/36Ar = 660±60 and an age of 404±7 Ma. Analyses from rims and small grains plot in triangle defined by these two apices and an atmospheric 40Ar/36Ar ratio. These results are consistent with the interpretation that the older 40Ar/39Ar muscovite ages from the NSDZ are the result of excess argon. These findings refute the possibility of extension and exhumation as early as 420 Ma along the NSDZ, and suggest that the entire package of NSDZ mylonites was cooled through muscovite closure to argon between 405-399 Ma immediately following UHP metamorphism.

Planar defects as Ar traps in trioctahedral micas: A mechanism for increased Ar retentivity in phlogopite

NASA Astrophysics Data System (ADS)

Camacho, A.; Lee, J. K. W.; Fitz Gerald, J. D.; Zhao, J.; Abdu, Y. A.; Jenkins, D. M.; Hawthorne, F. C.; Kyser, T. K.; Creaser, R. A.; Armstrong, R.; Heaman, L. W.

2012-08-01

The effects of planar defects and composition on Ar mobility in trioctahedral micas have been investigated in samples from a small marble outcrop (∼500 m2) in the Frontenac Terrane, Grenville Province, Ontario. These micas crystallized during amphibolite-facies metamorphism at ∼1170 Ma and experienced a thermal pulse ∼100 Ma later at shallow crustal levels associated with the emplacement of plutons. 87Rb/86Sr ages of the phlogopites range from ∼950 to ∼1050 Ma, consistent with resetting during the later thermal event. The same phlogopites however, give 40Ar/39Ar ages between ∼950 and 1160 Ma, spanning the age range of the two thermal events. This result is intriguing because these micas have undergone the same thermal history and were not deformed after peak metamorphic conditions. In order to understand this phenomenon, the chemical, crystallographical, and microstructural nature of four mica samples has been characterized in detail using a wide range of analytical techniques. The scanning electron microscope (SEM), electron microprobe (EMP), and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) data show that the micas are chemically homogeneous (with the exception of Ba) and similar in composition. The Fourier transform infrared spectroscopy and Mossbauer results show that the M sites for three of the micas are dominated by divalent cations and the Fe3+/(Fe2++Fe3+) ratio for all four phlogopites ranges from 0.10 to 0.25. The stable-isotopic data for calcite indicate that this outcrop was not affected by hydrothermal fluids after peak metamorphism. No correlation between chemical composition and 87Rb/86Sr and 40Ar/39Ar age or between crystal size and 40Ar/39Ar age is observed. The only major difference among all of the micas was revealed through transmitted electron microscope (TEM), which shows that the older 1M micas contain significantly more layer stacking defects, associated with crystallization, than the younger micas. We propose that these defect structures, which are enclosed entirely within the mineral grain may serve as Ar traps and effectively increase the Ar retentivity of the mineral. As this phenomenon has not been previously documented in micas, this may have significant implications for the interpretation of 40Ar/39Ar ages of minerals which have similar defect structures.

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

PubMed

Makarova, Kira S; Sorokin, Alexander V; Novichkov, Pavel S; Wolf, Yuri I; Koonin, Eugene V

2007-11-27

An evolutionary classification of genes from sequenced genomes that distinguishes between orthologs and paralogs is indispensable for genome annotation and evolutionary reconstruction. Shortly after multiple genome sequences of bacteria, archaea, and unicellular eukaryotes became available, an attempt on such a classification was implemented in Clusters of Orthologous Groups of proteins (COGs). Rapid accumulation of genome sequences creates opportunities for refining COGs but also represents a challenge because of error amplification. One of the practical strategies involves construction of refined COGs for phylogenetically compact subsets of genomes. New Archaeal Clusters of Orthologous Genes (arCOGs) were constructed for 41 archaeal genomes (13 Crenarchaeota, 27 Euryarchaeota and one Nanoarchaeon) using an improved procedure that employs a similarity tree between smaller, group-specific clusters, semi-automatically partitions orthology domains in multidomain proteins, and uses profile searches for identification of remote orthologs. The annotation of arCOGs is a consensus between three assignments based on the COGs, the CDD database, and the annotations of homologs in the NR database. The 7538 arCOGs, on average, cover approximately 88% of the genes in a genome compared to a approximately 76% coverage in COGs. The finer granularity of ortholog identification in the arCOGs is apparent from the fact that 4538 arCOGs correspond to 2362 COGs; approximately 40% of the arCOGs are new. The archaeal gene core (protein-coding genes found in all 41 genome) consists of 166 arCOGs. The arCOGs were used to reconstruct gene loss and gene gain events during archaeal evolution and gene sets of ancestral forms. The Last Archaeal Common Ancestor (LACA) is conservatively estimated to possess 996 genes compared to 1245 and 1335 genes for the last common ancestors of Crenarchaeota and Euryarchaeota, respectively. It is inferred that LACA was a chemoautotrophic hyperthermophile that, in addition to the core archaeal functions, encoded more idiosyncratic systems, e.g., the CASS systems of antivirus defense and some toxin-antitoxin systems. The arCOGs provide a convenient, flexible framework for functional annotation of archaeal genomes, comparative genomics and evolutionary reconstructions. Genomic reconstructions suggest that the last common ancestor of archaea might have been (nearly) as advanced as the modern archaeal hyperthermophiles. ArCOGs and related information are available at: ftp://ftp.ncbi.nih.gov/pub/koonin/arCOGs/.

Primary retention following nuclear recoil in β-decay: Proposed synthesis of a metastable rare gas oxide ((38)ArO4) from ((38)ClO4(-)) and the evolution of chemical bonding over the nuclear transmutation reaction path.

PubMed

Timm, Matthew J; Matta, Chérif F

2014-12-01

Argon tetroxide (ArO4) is the last member of the N=50 e(-) isoelectronic and isosteric series of ions: SiO4(4-), PO4(3-), SO4(2-), and ClO4(-). A high level computational study demonstrated that while ArO4 is kinetically stable it has a considerable positive enthalpy of formation (of ~298kcal/mol) (Lindh et al., 1999. J. Phys. Chem. A 103, pp. 8295-8302) confirming earlier predictions by Pyykkö (1990. Phys. Scr. 33, pp. 52-53). ArO4 can be expected to be difficult to synthesize by traditional chemistry due to its metastability and has not yet been synthesized at the time of writing. A computational investigation of the changes in the chemical bonding of chlorate (ClO4(-)) when the central chlorine atom undergoes a nuclear transmutation from the unstable artificial chlorine isotope (38)Cl to the stable rare argon isotope (38)Ar through β-decay, hence potentially leading to the formation of ArO4, is reported. A mathematical model is presented that allows for the prediction of yields following the recoil of a nucleus upon ejecting a β-electron. It is demonstrated that below a critical angle between the ejected β-electron and that of the accompanying antineutrino their respective linear momentums can cancel to such an extent as imparting a recoil to the daughter atom insufficient for breaking the Ar-O bond. As a result, a primary retention yield of ~1% of ArO4 is predicted following the nuclear disintegration. The study is conducted at the quadratic configuration interaction with single and double excitations [QCISD/6-311+G(3df)] level of theory followed by an analysis of the electron density by the quantum theory of atoms in molecules (QTAIM). Crossed potential energy surfaces (PES) were used to construct a PES from the metastable ArO4 ground singlet state to the Ar-O bond dissociation product ArO3+O((3)P) from which the predicted barrier to dissociation is ca. 22kcal/mol and the exothermic reaction energy is ca. 28kcal/mol [(U)MP2/6-311+G(d)]. Copyright © 2014 Elsevier Ltd. All rights reserved.

Can the evolution of nitrogen cycle be traced by the N isotopic composition in mica?

NASA Astrophysics Data System (ADS)

Pinti, D. L.; Hashizume, K.

2011-12-01

A significant portion of nitrogen present in sedimentary rocks has a biological origin, trapped either in organic form, or as ammonium ion substituting potassium in mica. Mica might preserve biological N isotopic signatures (δ15N) in the geological record, allowing the evolution of the N cycle to be traced. However, diagenetic or metamorphic events can modify the pristine N isotopic signature leading to inaccurate interpretations. For example, devolatilization of the rock leads to a reduction in the N abundance and a contemporary increase of the δ15N because 14N escapes faster than 15N. We measured N isotopic compositions in whole rock, mica and feldspars separates from two Archean suites of cherts: 3.5 Ga Kitty's Gap and North Pole sequences in Pilbara, Western Australia and from the 3.45 Ga Hooggenoeg Fm, Barberton Greenstone Belt, South Africa. N was compared with the argon elemental and isotopic composition, because a relation between NH4+, which replaces K+ and radiogenic 40Ar*, which is produced by electron capture of K+ is expected. Both Pilbara and Barberton cherts show a clear correlation between N and 40Ar*, confirming the occurrence of a common speciation. K-Ar dating of the Hooggenoeg Formation mica and feldspars give ages of 2.1 and 1.1 Ga, respectively, indicating that loosely-bounded noble gas 40Ar* is lost from the host mineral during known metamorphic events. Observed correlations between 40Ar* and N suggests that nitrogen, although more strongly bounded as ammonium is also lost, possibly leading to isotopic fractionation. Measured δ15N values, however, are relatively constant (+8.1±0.6% for whole rock and +10.9±1.2% for mica) and do not display an inverse correlation with N abundances. This suggests either 1) that isotopic fractionation is not produced during N loss or; 2) that a process other than devolatilization fractionate N isotopes. Measured δ15N values are at levels far greater than those expected for Early Archean kerogens (0±2%) thus suggesting that fractionation took place but probably is induced by a process other than devolatilization. Step-combustion analyses of N and Ar from Kitty's Gap cherts reveals the presence of an inverse correlation between δ15N values and the 40Ar*/N ratios indicating mixing between two isotopically distinct components. The first, released at temperatures between 400° and 700° C from hydrous minerals, has a δ15N value close or below 0% and is accompanied by radiogenic Ar. The second, void of radiogenic Ar, is released at temperatures >800° C from anhydrous phases and has a δ15N value of +6 to +8%. The first component is likely ammonium replacing K in mica while the second is possibly ammonium adsorbed in-between negatively charged layers of clay minerals. Upon dehydration, the inter-layer site will be "closed", and loosely adsorbed cations are finally trapped in the mineral while noble gas Ar is lost. The higher δ15N in mica is possibly due either to (1) trapping of N representing a later (post-Archean) event, or; (2) fractionation of N with negative δ15N value due to partial release of N from the adsorption site. Mixing between different aliquots of these two components might possibly explain the observed N isotopic variability among micas in the Archean.

Structure-based Virtual Screening and Identification of a Novel Androgen Receptor Antagonist*

PubMed Central

Song, Chin-Hee; Yang, Su Hui; Park, Eunsook; Cho, Suk Hee; Gong, Eun-Yeung; Khadka, Daulat Bikram; Cho, Won-Jea; Lee, Keesook

2012-01-01

Hormonal therapies, mainly combinations of anti-androgens and androgen deprivation, have been the mainstay treatment for advanced prostate cancer because the androgen-androgen receptor (AR) system plays a pivotal role in the development and progression of prostate cancers. However, the emergence of androgen resistance, largely due to inefficient anti-hormone action, limits the therapeutic usefulness of these therapies. Here, we report that 6-(3,4-dihydro-1H-isoquinolin-2-yl)-N-(6-methylpyridin-2-yl)nicotinamide (DIMN) acts as a novel anti-androgenic compound that may be effective in the treatment of both androgen-dependent and androgen-independent prostate cancers. Through AR structure-based virtual screening using the FlexX docking model, fifty-four compounds were selected and further screened for AR antagonism via cell-based tests. One compound, DIMN, showed an antagonistic effect specific to AR with comparable potency to that of the classical AR antagonists, hydroxyflutamide and bicalutamide. Consistent with their anti-androgenic activity, DIMN inhibited the growth of androgen-dependent LNCaP prostate cancer cells. Interestingly, the compound also suppressed the growth of androgen-independent C4–2 and CWR22rv prostate cancer cells, which express a functional AR, but did not suppress the growth of the AR-negative prostate cancer cells PPC-1, DU145, and R3327-AT3.1. Taken together, the results suggest that the synthetic compound DIMN is a novel anti-androgen and strong candidate for useful therapeutic agent against early stage to advanced prostate cancer. PMID:22798067

Lagrangian coherent structures along atmospheric rivers.

PubMed

Garaboa-Paz, Daniel; Eiras-Barca, Jorge; Huhn, Florian; Pérez-Muñuzuri, Vicente

2015-06-01

We show that filamentous Atmospheric Rivers (ARs) over the Northern Atlantic Ocean are closely linked to attracting Lagrangian Coherent Structures (LCSs) in the large scale wind field. The detected LCSs represent lines of attraction in the evolving flow with a significant impact on all passive tracers. Using Finite-Time Lyapunov Exponents, we extract LCSs from a two-dimensional flow derived from water vapor flux of atmospheric reanalysis data and compare them to the three-dimensional LCS obtained from the wind flow. We correlate the typical filamentous water vapor patterns of ARs with LCSs and find that LCSs bound the filaments on the back side. Passive advective transport of water vapor in the AR from tropical latitudes is potentially possible.

Medicinal chemistry of adenosine, P2Y and P2X receptors.

PubMed

Jacobson, Kenneth A; Müller, Christa E

2016-05-01

Pharmacological tool compounds are now available to define action at the adenosine (ARs), P2Y and P2X receptors. We present a selection of the most commonly used agents to study purines in the nervous system. Some of these compounds, including A1 and A3 AR agonists, P2Y1R and P2Y12R antagonists, and P2X3, P2X4 and P2X7 antagonists, are potentially of clinical use in treatment of disorders of the nervous system, such as chronic pain, neurodegeneration and brain injury. Agonists of the A2AAR and P2Y2R are already used clinically, P2Y12R antagonists are widely used antithrombotics and an antagonist of the A2AAR is approved in Japan for treating Parkinson's disease. The selectivity defined for some of the previously introduced compounds has been revised with updated pharmacological characterization, for example, various AR agonists and antagonists were deemed A1AR or A3AR selective based on human data, but species differences indicated a reduction in selectivity ratios in other species. Also, many of the P2R ligands still lack bioavailability due to charged groups or hydrolytic (either enzymatic or chemical) instability. X-ray crystallographic structures of AR and P2YRs have shifted the mode of ligand discovery to structure-based approaches rather than previous empirical approaches. The X-ray structures can be utilized either for in silico screening of chemically diverse libraries for the discovery of novel ligands or for enhancement of the properties of known ligands by chemical modification. Although X-ray structures of the zebrafish P2X4R have been reported, there is scant structural information about ligand recognition in these trimeric ion channels. In summary, there are definitive, selective agonists and antagonists for all of the ARs and some of the P2YRs; while the pharmacochemistry of P2XRs is still in nascent stages. The therapeutic potential of selectively modulating these receptors is continuing to gain interest in such fields as cancer, inflammation, pain, diabetes, ischemic protection and many other conditions. This article is part of the Special Issue entitled 'Purines in Neurodegeneration and Neuroregeneration'. Published by Elsevier Ltd.

FAST TRACK COMMUNICATION: On the structure of k-Lie algebras

NASA Astrophysics Data System (ADS)

Papadopoulos, G.

2008-07-01

We show that the structure constants of k-Lie algebras, k > 3, with a positive definite metric are the sum of the volume forms of orthogonal k-planes. This generalizes the result for k = 3 in Papadopoulos (2008 Preprint arXiv:0804.2662) and Gauntlett and Gutowski (2008 Preprint arXiv:0804.3078), and confirms a conjecture in Figueroa-O'Farrill and Papadopoulos (2002 Preprint math/0211170).

Genetic structure and variability of virus populations in cross-protected grapevines superinfected by Grapevine fanleaf virus.

PubMed

Vigne, Emmanuelle; Marmonier, Aurélie; Komar, Véronique; Lemaire, Olivier; Fuchs, Marc

2009-09-01

Recombination was assessed in a vineyard site in which grapevines cross-protected with mild strains GHu of Grapevine fanleaf virus (GFLV) or Ta of Arabis mosaic virus (ArMV) were superinfected with GFLV field isolates following transmission by the nematode vector Xiphinema index. The genetic structure and variability within RNA2 of isolates from grapevines co-infected with GFLV field isolates and either GFLV-GHu or ArMV-Ta were characterized to identify intra- and interspecies recombinants. Sequence analysis and phylogenetic relationships inferred intraspecies recombination among GFLV field isolates but not between field isolates and GFLV-GHu. SISCAN analysis confirmed a mosaic structure for two GFLV field isolates for which recombination sites were located in the movement protein and coat protein genes. One of the recombinants was found in eight grapevines that were in close spatial proximity within the vineyard site, suggesting its transmission by X. index. No interspecies recombination was detected between GFLV field isolates and ArMV-Ta. Altogether, our findings suggest that mild protective strains GFLV-GHu and ArMV-Ta did not assist the emergence of viable recombinants to detectable level during a 12-year cross-protection trial. To our knowledge, this is the first extensive characterization of the genetic structure and variability of virus isolates in cross-protected plants.

Coeval Ar-40/Ar-39 ages of 65.0 million years ago from Chicxulub crater melt rock and Cretaceous-Tertiary boundary tektites

NASA Technical Reports Server (NTRS)

Swisher, Carl C., III; Grajales-Nishimura, Jose M.; Montanari, Alessandro; Margolis, Stanley V.; Claeys, Philippe; Alvarez, Walter; Renne, Paul; Cedillo-Pardo, Esteban; Maurrasse, Florentin J.-M. R.; Curtis, Garniss H.

1992-01-01

Ar-40/Ar-39 dating of drill-core samples of a glassy melt rock recovered from beneath a massive impact breccia contained with the 180-kilometer subsurface Chicxulub crater yields well-behaved incremental heating spectra with a mean plateau age of 64.98 +/- 0.05 million years ago (Ma). The glassy melt rock of andesitic composition was obtained from core 9 (1390 to 1393 meters) in the Chicxulub 1 well. The age of the melt rock is virtually indistinguishable from Ar-40/Ar-39 ages obtained on tektite glass from Beloc, Haiti, and Arroyo el Mimbral, northeastern Mexico, of 65.01 +/- 0.08 Ma (mean plateau age for Beloc) and 65.07 +/- 0.10 Ma (mean total fusion age for both sites). The Ar-40/Ar-39 ages, in conjunction with geochemical and petrological similarities, strengthen the suggestion that the Chicxulub structure is the source for the Haitian and Mexican tektites and is a viable candidate for the Cretaceous-Tertiary boundary impact site.

20-Aminosteroids as a novel class of selective and complete androgen receptor antagonists and inhibitors of prostate cancer cell growth.

PubMed

Fousteris, Manolis A; Schubert, Undine; Roell, Daniela; Roediger, Julia; Bailis, Nikolaos; Nikolaropoulos, Sotiris S; Baniahmad, Aria; Giannis, Athanassios

2010-10-01

Here, the synthesis and the evaluation of novel 20-aminosteroids on androgen receptor (AR) activity is reported. Compounds 11 and 18 of the series inhibit both the wild type and the T877A mutant AR-mediated transactivation indicating AR antagonistic function. Interestingly, minor structural changes such as stereoisomers of the amino lactame moiety exhibit preferences for antagonism among wild type and mutant AR. Other tested nuclear receptors are only weakly or not affected. In line with this, the prostate cancer cell growth of androgen-dependent but not of cancer cells lacking expression of the AR is inhibited. Further, the expression of the prostate specific antigen used as a diagnostic marker is also repressed. Finally steroid 18 enhances cellular senescence that might explain in part the growth inhibition mediated by this derivative. Steroids 11 and 18 are the first steroids that act as complete AR antagonists and exhibit AR specificity. Copyright © 2010 Elsevier Ltd. All rights reserved.

Gold nano-particle formation from crystalline AuCN: Comparison of thermal, plasma- and ion-beam activated decomposition

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beck, Mihály T.; Bertóti, Imre, E-mail: bertoti.imre@ttk.mta.hu; Mohai, Miklós

In this work, in addition to the conventional thermal process, two non-conventional ways, the plasma and ion beam activations are described for preparing gold nanoparticles from microcrystalline AuCN precursor. The phase formation at plasma and ion beam treatments was compared with that at thermal treatments and the products and transformations were characterized by thermogravimetry-mass-spectrometry (TG-MS), X-ray photoelectron spectroscopy (XPS) and transmission electron microscopy (TEM). TG-MS measurements in Ar atmosphere revealed that AuCN decomposition starts at 400 °C and completes at ≈700 °C with evolution of gaseous (CN){sub 2}. XPS and TEM show that in heat treatment at 450 °C formore » 1 h in Ar, loss of nitrogen and carbon occurs and small, 5–30 nm gold particles forms. Heating at 450 °C for 10 h in sealed ampoule, much larger, 60–200 nm size and well faceted Au particles develop together with a fibrous (CN){sub n} polymer phase, and the Au crystallites are covered by a 3–5 nm thick polymer shell. Low pressure Ar plasma treatment at 300 eV energy results in 4–20 nm size Au particles and removes most of the nitrogen and part of carbon. During Ar{sup +} ion bombardment with 2500 eV energy, 5–30 nm size Au crystallites form already in 10 min, with preferential loss of nitrogen and with increased amount of carbon residue. The results suggest that plasma and ion beam activation, acting similarly to thermal treatment, may be used to prepare Au nanoparticles from AuCN on selected surface areas either by depositing AuCN precursors on selected regions or by focusing the applied ionized radiation. Thus they may offer alternative ways for preparing tailor-made catalysts, electronic devices and sensors for different applications. - Graphical abstract: Proposed scheme of the decomposition mechanism of AuCN samples: heat treatment in Ar flow (a) and in sealed ampoule (b); Ar{sup +} ion treatment at 300 eV (c) and at 2500 eV (d). Cross section sketches illustrate the Au phase formation and the corresponding TEM micrographs are shown as top views. The dotted lines represent the original boundaries of the AuCN crystals. - Highlights: • AuCN decomposes between 400 and 700 °C with evolution of gaseous (CN){sub 2}. • Epitaxial relationship is established between Au and parent AuCN crystals. • Ar plasma treatment results in similar phase transition than the thermal treatment. • Plasma and ion-beam activation offer alternative way for preparing Au nanocrystals. • Reaction mechanisms of Au particle formation at the three treatments are proposed.« less

Investigation of a van der Waals complex with C 1 symmetry: the free-jet rotational spectrum of 1,2-difluoroethane-Ar

NASA Astrophysics Data System (ADS)

Melandri, Sonia; Velino, Biagio; Favero, Paolo G.; Dell'Erba, Adele; Caminati, Walther

2000-04-01

The van der Waals complex between Ar and 1,2-difluoroethane has been investigated by free-jet absorption millimeter-wave spectroscopy in the frequency range 60-78 GHz. The analysis of the spectroscopic constants derived from the rotational spectrum allowed the determination of the dimer's structure. 1,2-Difluoroethane is in the gauche conformation and the Ar atom is in a position stabilized by the interaction with one fluorine and the two carbon atoms. The distance between Ar and the center of mass (CM) of the monomer is 3.968 Å, the angle between the Ar-CM line and the C-C bond is 65° and the dihedral angle Ar-CM-C-C is 99°. From centrifugal distortion effects the dissociation energy of the complex has been estimated to be 2.1 kJ/mol.

Possible Mesozoic age of Ellenville Zn-Pb-Cu(Ag) deposit, Shawangunk Mountains, New York

USGS Publications Warehouse

Friedman, J.D.; Conrad, J.E.; McKee, E.H.; Mutschler, F.E.; Zartman, R.E.

1994-01-01

Ore textures, epithermal open-space filling of Permian structures of the Alleghanian orogeny, and largely postorogenic mineralization of the Ellenville, New York, composite Zn-Pb-Cu(Ag) vein system, provide permissive evidence for post-Permian mineralization. Isochron ages determined by 40Ar/39Ar laser-fusion techniques for K-bearing liquid inclusions in main-stage quartz from the Ellenville deposit additionally suggest a Mesozoic time of mineralization, associated with extensional formation of the Newark basin. The best 40Ar/39Ar total-fusion age range is 165 ?? 30 to 193 ?? 35 Ma. The Mesozoic 40Ar/39Ar age agrees with that of many other dated northern Appalachian Zn-Pb-Cu(Ag) deposits with near-matching lead isotope ratios, and adds new evidence of Jurassic tectonism and mineralization as an overprint to Late Paleozoic tectonism at least as far north as Ellenville (lat. 41??43???N). ?? 1994 Springer-Verlag.

A new tephrochronology for early diverse stone tool technologies and long-distance raw material transport in the Middle to Late Pleistocene Kapthurin Formation, East Africa.

PubMed

Blegen, Nick; Jicha, Brian R; McBrearty, Sally

2018-05-09

The Middle to Late Pleistocene (780-10 ka) of East Africa records evidence of significant behavioral change, early fossils of Homo sapiens, and the dispersals of our species across and out of Africa. Studying human evolution in this time period thus requires an extensive and precise chronology relating behavioral evidence from archaeological sequences to aspects of hominin biology and evidence of past environments from fossils and geological sequences. Tephrochronology provides the chronostratigraphic resolution to achieve this through correlation and dating of volcanic ashes. The tephrochronology of the Kapthurin Formation presented here, based on tephra correlations and 40 Ar/ 39 Ar dates, provides new ages between 395.6 ± 3.5 ka and 465.3 ± 1.0 ka for nine sites showing diverse blade and Levallois methods of core reduction. These are >110 kyr older than previously known in East Africa. New 40 Ar/ 39 Ar dates provide a refined age of 222.5 ± 0.6 ka for early evidence of long-distance (166 km) obsidian transport at the Sibilo School Road Site. A tephra correlation between the Baringo and Victoria basins also provides a new date of ∼100 ka for the Middle Stone Age site of Keraswanin. By providing new and older dates for 11 sites containing several important aspects of hominin behavior and extending the chronology of the Kapthurin Formation forward by ∼130,000 years, the tephrochronology presented here contributes one of the longest and most refined chronostratigraphic frameworks of Middle through Late Pleistocene East Africa. This tephrochronology thus provides the foundation to understand the process of modern human behavioral evolution as it relates to biological and paleoenvironmental circumstances. Copyright © 2018 Elsevier Ltd. All rights reserved.

Augmented reality visualization of deformable tubular structures for surgical simulation.

PubMed

Ferrari, Vincenzo; Viglialoro, Rosanna Maria; Nicoli, Paola; Cutolo, Fabrizio; Condino, Sara; Carbone, Marina; Siesto, Mentore; Ferrari, Mauro

2016-06-01

Surgical simulation based on augmented reality (AR), mixing the benefits of physical and virtual simulation, represents a step forward in surgical training. However, available systems are unable to update the virtual anatomy following deformations impressed on actual anatomy. A proof-of-concept solution is described providing AR visualization of hidden deformable tubular structures using nitinol tubes sensorized with electromagnetic sensors. This system was tested in vitro on a setup comprised of sensorized cystic, left and right hepatic, and proper hepatic arteries. In the trial session, the surgeon deformed the tubular structures with surgical forceps in 10 positions. The mean, standard deviation, and maximum misalignment between virtual and real arteries were 0.35, 0.22, and 0.99 mm, respectively. The alignment accuracy obtained demonstrates the feasibility of the approach, which can be adopted in advanced AR simulations, in particular as an aid to the identification and isolation of tubular structures. Copyright © 2015 John Wiley & Sons, Ltd. Copyright © 2015 John Wiley & Sons, Ltd.

Near-IR Resonance Raman Spectroscopy of Archaerhodopsin 3: Effects of Transmembrane Potential

PubMed Central

Saint Clair, Erica C.; Ogren, John I.; Mamaev, Sergey; Russano, Daniel; Kralj, Joel M.; Rothschild, Kenneth J.

2013-01-01

Archaerhodopsin 3 (AR3) is a light driven proton pump from Halorubrum sodomense that has been used as a genetically targetable neuronal silencer and an effective fluorescent sensor of transmembrane potential. Unlike the more extensively studied bacteriorhodopsin (BR) from Halobacterium salinarum, AR3 readily incorporates into the plasma membrane of both E. coli and mammalian cells. Here, we used near-IR resonance Raman confocal microscopy to study the effects of pH and membrane potential on the AR3 retinal chromophore structure. Measurements were performed both on AR3 reconstituted into E. coli polar lipids and in vivo in E. coli expressing AR3 in the absence and presence of a negative transmembrane potential. The retinal chromophore structure of AR3 is in an all-trans configuration almost identical to BR over the entire pH range from 3–11. Small changes are detected in the retinal ethylenic stretching frequency and Schiff Base (SB) hydrogen bonding strength relative to BR which may be related to a different water structure near the SB. In the case of the AR3 mutant D95N, at neutral pH an all-trans retinal O-like species (Oall-trans) is found. At higher pH a second 13-cis retinal N-like species (N13-cis) is detected which is attributed to a slowly decaying intermediate in the red-light photocycle of D95N. However, the amount of N13-cis detected is less in E. coli cells but is restored upon addition of carbonyl cyanide m-chlorophenyl hydrazone (CCCP) or sonication, both of which dissipate the normal negative membrane potential. We postulate that these changes are due to the effect of membrane potential on the N13-cis to M13-cis levels accumulated in the D95N red-light photocycle and on a molecular level by the effects of the electric field on the protonation/deprotonation of the cytoplasmic accessible SB. This mechanism also provides a possible explanation for the observed fluorescence dependence of AR3 and other microbial rhodopsins on transmembrane potential. PMID:23189985

Molecular interactions between fenoterol stereoisomers and derivatives and the β₂-adrenergic receptor binding site studied by docking and molecular dynamics simulations.

PubMed

Plazinska, Anita; Kolinski, Michal; Wainer, Irving W; Jozwiak, Krzysztof

2013-11-01

The β2 adrenergic receptor (β2-AR) has become a model system for studying the ligand recognition process and mechanism of the G protein coupled receptors activation. In the present study stereoisomers of fenoterol and some of its derivatives (N = 94 molecules) were used as molecular probes to identify differences in stereo-recognition interactions between β2-AR and structurally similar agonists. The present study aimed at determining the 3D molecular models of the fenoterol derivative-β2-AR complexes. Molecular models of β2-AR have been developed by using the crystal structure of the human β2-AR T4 lysozyme fusion protein with bound (S)-carazolol (PDB ID: 2RH1) and more recently reported structure of a nanobody-stabilized active state of the β2-AR with the bound full agonist BI-167107 (PDB ID: 3P0G). The docking procedure allowed us to study the similarities and differences in the recognition binding site(s) for tested ligands. The agonist molecules occupied the same binding region, between TM III, TM V, TM VI and TM VII. The residues identified by us during docking procedure (Ser203, Ser207, Asp113, Lys305, Asn312, Tyr308, Asp192) were experimentally indicated in functional and biophysical studies as being very important for the agonist-receptor interactions. Moreover, the additional space, an extension of the orthosteric pocket, was identified and described. Furthermore, the molecular dynamics simulations were used to study the molecular mechanism of interaction between ligands ((R,R')- and (S,S')-fenoterol) and β2-AR. Our research offers new insights into the ligand stereoselective interaction with one of the most important GPCR member. This study may also facilitate the design of improved selective medications, which can be used to treat, prevent and control heart failure symptoms.

Structural Elements in the Gαs and Gαq C Termini That Mediate Selective G Protein-coupled Receptor (GPCR) Signaling.

PubMed

Semack, Ansley; Sandhu, Manbir; Malik, Rabia U; Vaidehi, Nagarajan; Sivaramakrishnan, Sivaraj

2016-08-19

Although the importance of the C terminus of the α subunit of the heterotrimeric G protein in G protein-coupled receptor (GPCR)-G protein pairing is well established, the structural basis of selective interactions remains unknown. Here, we combine live cell FRET-based measurements and molecular dynamics simulations of the interaction between the GPCR and a peptide derived from the C terminus of the Gα subunit (Gα peptide) to dissect the molecular mechanisms of G protein selectivity. We observe a direct link between Gα peptide binding and stabilization of the GPCR conformational ensemble. We find that cognate and non-cognate Gα peptides show deep and shallow binding, respectively, and in distinct orientations within the GPCR. Binding of the cognate Gα peptide stabilizes the agonist-bound GPCR conformational ensemble resulting in favorable binding energy and lower flexibility of the agonist-GPCR pair. We identify three hot spot residues (Gαs/Gαq-Gln-384/Leu-349, Gln-390/Glu-355, and Glu-392/Asn-357) that contribute to selective interactions between the β2-adrenergic receptor (β2-AR)-Gαs and V1A receptor (V1AR)-Gαq The Gαs and Gαq peptides adopt different orientations in β2-AR and V1AR, respectively. The β2-AR/Gαs peptide interface is dominated by electrostatic interactions, whereas the V1AR/Gαq peptide interactions are predominantly hydrophobic. Interestingly, our study reveals a role for both favorable and unfavorable interactions in G protein selection. Residue Glu-355 in Gαq prevents this peptide from interacting strongly with β2-AR. Mutagenesis to the Gαs counterpart (E355Q) imparts a cognate-like interaction. Overall, our study highlights the synergy in molecular dynamics and FRET-based approaches to dissect the structural basis of selective G protein interactions. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

ARS labs update to California Cotton Ginners and Growers

USDA-ARS?s Scientific Manuscript database

There are four USDA-ARS labs involved in cotton harvesting, processing & fiber quality research; The Southwestern Cotton Ginning Research Laboratory (Mesilla Park, NM); The Cotton Production and Processing Unit (Lubbock, TX); The Cotton Ginning Research Unit (Stoneville, MS); and The Cotton Structur...

Structure-Based Approach To Identify 5-[4-Hydroxyphenyl]pyrrole-2-carbonitrile Derivatives as Potent and Tissue Selective Androgen Receptor Modulators.

PubMed

Unwalla, Ray; Mousseau, James J; Fadeyi, Olugbeminiyi O; Choi, Chulho; Parris, Kevin; Hu, Baihua; Kenney, Thomas; Chippari, Susan; McNally, Christopher; Vishwanathan, Karthick; Kilbourne, Edward; Thompson, Catherine; Nagpal, Sunil; Wrobel, Jay; Yudt, Matthew; Morris, Carl A; Powell, Dennis; Gilbert, Adam M; Chekler, Eugene L Piatnitski

2017-07-27

In an effort to find new and safer treatments for osteoporosis and frailty, we describe a novel series of selective androgen receptor modulators (SARMs). Using a structure-based approach, we identified compound 7, a potent AR (ARE EC 50 = 0.34 nM) and selective (N/C interaction EC 50 = 1206 nM) modulator. In vivo data, an AR LBD X-ray structure of 7, and further insights from modeling studies of ligand receptor interactions are also presented.

Structural and Optical Behaviour of Ar+ Implanted Polycarbonate

NASA Astrophysics Data System (ADS)

Shekhawat, Nidhi; Aggarwal, Sanjeev; Sharma, Annu; Deshpande, S. K.; Nair, K. G. M.

2011-07-01

Effects of 130 keV Ar+ ion implantation on the structural and optical properties of polycarbonate specimens have been studied using Raman, UV-Visible spectroscopy and glancing angle X-ray diffraction techniques. Formation of disordered carbonaceous network in the implanted layers has been observed using Raman and UV-Visible spectroscopy. A sharp decline in band gap values (4.1 eV to 0.63 eV) with increase in implantation dose has been observed. This decrease in optical band gap has been correlated with the formation of disordered structures in the implanted layers of polycarbonate.

Use of JH4 joining segment gene by an anti-arsonate antibody that bears the major A-strain cross-reactive idiotype but displays diminished antigen binding.

PubMed

Slaughter, C A; Jeske, D J; Kuziel, W A; Milner, E C; Capra, J D

1984-06-01

One of the antibody families utilized by the A/J mouse in its response to p-azophenylarsonate (Ars) is characterized by the expression of the major anti-arsonate cross-reactive idiotype (CRI) of the A strain. This family has been termed the Ars-A family. A hybridoma antibody (HP 101F11 ) obtained after immunization of an A/J mouse with Ars was identified initially as displaying the CRI, but was subsequently found to bind antigen at a level much lower than most members of the Ars-A family. The results of binding studies suggested that HP 101F11 possesses reduced avidity for antigen. When isolated light and heavy chains were allowed to recombine with the heavy and light chains of a strongly antigen-binding, strongly CRI-positive antibody of the Ars-A family (HP 93G7 ), the low level of antigen binding by HP 101F11 was found to be due to a structurally variant heavy chain. Whereas antibodies of the Ars-A family with normal avidity for antigen had been shown to use the JH2 joining segment gene, amino acid sequence analysis of HP 101F11 revealed that this antibody has a JH segment with a sequence identical to that encoded by a portion of a different JH gene, JH4 . The implication that 101F11 uses the JH4 gene instead of JH2 was supported by the observation that the productively rearranged gene is associated with an Eco R1 restriction fragment 0.95 Kb smaller than the corresponding fragments of Ars-A hybridomas with normal avidity for antigen. The size difference of 0.95 Kb corresponds exactly to the known distance between the JH2 and JH4 genes in BALB/c germline DNA. In addition to the structural differences immediately attributable to the use of JH4 , HP 101F11 has shown an amino acid interchange in the DH segment, and a single amino acid deletion at the DH-JH boundary. These results show that variation among members of the Ars-A family in the DH and/or JH segments provides alternative structural forms of Ars-A antibodies upon which selective processes can operate during the course of an immune response.

Time and duration of metamorphism and exhumation of the central Rhodopian core complex, Bulgaria

NASA Astrophysics Data System (ADS)

Ovtcharova, M.; von Quadt, A.; Peytcheva, I.; Neubauer, F.; Heinrich, C. A.; Kaiser, M.

2003-04-01

The evolution of central Rhodopian dome (Bulgaria) is interpreted in terms of an extensional collapse of thickened crust (Ivanov at al., 2000). U-Pb isotope dating (single Zr and Mnz), Rb-Sr (W.R., Bt and Ap) and Ar-Ar (on Bt) were carried out on different rocks from the central Rhodope, Bulgaria, to constrain the timing and duration of the metamorphism and exhumation of the core complex. The beginning of extensional stage is marked by intrusion of earliest non-penetratively deformed granite bodies at 53Ma (U-Pb on single Zr and Mnz). The late Alpine extensional evolution of the massif is marked by a detachment system connected with exhumation of the migmatites in the core part of the dome (lower plate). U-Pb analyses on Mnz and Zr from mesosome and discordant leucosome yield a Variscan protolith age of the gneiss (311 Ma) and Eocene age (37Ma) of crystallization of the newly formed anatectic melt that corresponds with the peak of the Alpine metamorphic event (P 4.5-6kbar and T 720-750^oC; Georgieva et al., 2002). Rb-Sr mineral system of the weakly deformed gneisses from lower plate of the core complex gives evidence for a cooling age of 34.5±0.34Ma. This result is confirmed by Ar-Ar on Bt from the same rock: 35.5±0.4Ma. Ar-Ar data on biotite from gneisses of the upper plate yield an age of 34.9±0.6Ma. The same age is reflected by an Rb-Sr isochron (W.R., Bt and Ap) of 35.22±0.35Ma. The post-collisional extension was followed by graben depressions filled with sediments of Eocene-Oligocene age and active volcanism and ore mineralization (Zn-Pb and Cu-Pb-Zn ore deposits). Connected with the most intensively "stretched" sections of the extensional system is emplacement of rhyolitic dikes at 32.8±0.41Ma (U-Pb on single Zr, Xe). The available data constrain narrow time bracket between timing of high-grade metamorphism event (37Ma, >600^oC), cooling (35Ma, 300ºC) of the core complex and volcanic activity (32Ma) that corresponds with rapid exhumation tectonic regime. References: Ivanov, Z., D. Dimov, S. Sarov. 2000.ABCD-GEODE workshop, Borovets,Guide to excursion (B), 6-17. Georgieva, M., Z. Cherneva, K. Kolcheva, S. Sarov, J. Gerdjikov, E. Voinova 2002. Scientific meeting of the Geological Institute BAS, (in press).

Diagnosis of an intense atmospheric river impacting the pacific northwest: Storm summary and offshore vertical structure observed with COSMIC satellite retrievals

USGS Publications Warehouse

Neiman, P.J.; Ralph, F.M.; Wick, G.A.; Kuo, Y.-H.; Wee, T.-K.; Ma, Z.; Taylor, G.H.; Dettinger, M.D.

2008-01-01

This study uses the new satellite-based Constellation Observing System for Meteorology, Ionosphere, and Climate (COSMIC) mission to retrieve tropospheric profiles of temperature and moisture over the data-sparse eastern Pacific Ocean. The COSMIC retrievals, which employ a global positioning system radio occultation technique combined with "first-guess" information from numerical weather prediction model analyses, are evaluated through the diagnosis of an intense atmospheric river (AR; i.e., a narrow plume of strong water vapor flux) that devastated the Pacific Northwest with flooding rains in early November 2006. A detailed analysis of this AR is presented first using conventional datasets and highlights the fact that ARs are critical contributors to West Coast extreme precipitation and flooding events. Then, the COSMIC evaluation is provided. Offshore composite COSMIC soundings north of, within, and south of this AR exhibited vertical structures that are meteorologically consistent with satellite imagery and global reanalysis fields of this case and with earlier composite dropsonde results from other landfalling ARs. Also, a curtain of 12 offshore COSMIC soundings through the AR yielded cross-sectional thermodynamic and moisture structures that were similarly consistent, including details comparable to earlier aircraft-based dropsonde analyses. The results show that the new COSMIC retrievals, which are global (currently yielding ???2000 soundings per day), provide high-resolution vertical-profile information beyond that found in the numerical model first-guess fields and can help monitor key lower-tropospheric mesoscale phenomena in data-sparse regions. Hence, COSMIC will likely support a wide array of applications, from physical process studies to data assimilation, numerical weather prediction, and climate research. ?? 2008 American Meteorological Society.

insilico Characterization and Homology Modeling of Arabitol Dehydrogenase (ArDH) from Candida albican.

PubMed

Sarwar, Muhammad Waseem; Saleem, Irum Baddisha; Ali, Asif; Abbas, Farhat

2013-01-01

Arabitol dehydrogenase (ArDH) is involved in the production of different sugar alcohols like arabitol, sorbitol, mannitol, erythritol and xylitol by using five carbon sugars as substrate. Arabinose, d-ribose, d-ribulose, xylose and d-xylulose are known substrate of this enzyme. ArDH is mainly produced by osmophilic fungi for the conversion of ribulose to arabitol under stress conditions. Recently this enzyme has been used by various industries for the production of pharmaceutically important sugar alcohols form cheap source than glucose. But the information at structure level as well as its binding energy analysis with different substrates was missing. The present study was focused on sequence analysis, insilico characterization and substrate binding analysis of ArDH from a fungus specie candida albican. Sequence analysis and physicochemical properties showed that this protein is highly stable, negatively charged and having more hydrophilic regions, these properties made this enzyme to bind with number of five carbon sugars as substrate. The predicted 3D model will helpful for further structure based studies. Docking analysis provided free energies of binding of each substrate from a best pose as arabinose -9.8224calK/mol, dribose -11.3701Kcal/mol, d-ribulose -8.9230Kcal/mol, xylose -9.7007Kcal/mol and d-xylulose 9.7802Kcal/mol. Our study provided insight information of structure and interactions of ArDH with its substrate. These results obtained from this study clearly indicate that d-ribose is best substrate for ArDH for the production of sugar alcohols. This information will be helpful for better usage of this enzyme for hyper-production of sugar alcohols by different industries.

insilico Characterization and Homology Modeling of Arabitol Dehydrogenase (ArDH) from Candida albican

PubMed Central

Sarwar, Muhammad Waseem; Saleem, Irum Baddisha; Ali, Asif; Abbas, Farhat

2013-01-01

Background: Arabitol dehydrogenase (ArDH) is involved in the production of different sugar alcohols like arabitol, sorbitol, mannitol, erythritol and xylitol by using five carbon sugars as substrate. Arabinose, d-ribose, d-ribulose, xylose and d-xylulose are known substrate of this enzyme. ArDH is mainly produced by osmophilic fungi for the conversion of ribulose to arabitol under stress conditions. Recently this enzyme has been used by various industries for the production of pharmaceutically important sugar alcohols form cheap source than glucose. But the information at structure level as well as its binding energy analysis with different substrates was missing. Results: The present study was focused on sequence analysis, insilico characterization and substrate binding analysis of ArDH from a fungus specie candida albican. Sequence analysis and physicochemical properties showed that this protein is highly stable, negatively charged and having more hydrophilic regions, these properties made this enzyme to bind with number of five carbon sugars as substrate. The predicted 3D model will helpful for further structure based studies. Docking analysis provided free energies of binding of each substrate from a best pose as arabinose -9.8224calK/mol, dribose -11.3701Kcal/mol, d-ribulose -8.9230Kcal/mol, xylose -9.7007Kcal/mol and d-xylulose 9.7802Kcal/mol. Conclusion: Our study provided insight information of structure and interactions of ArDH with its substrate. These results obtained from this study clearly indicate that d-ribose is best substrate for ArDH for the production of sugar alcohols. This information will be helpful for better usage of this enzyme for hyper-production of sugar alcohols by different industries. PMID:24391356

Human sex hormone-binding globulin binding affinities of 125 structurally diverse chemicals and comparison with their binding to androgen receptor, estrogen receptor, and α-fetoprotein.

PubMed

Hong, Huixiao; Branham, William S; Ng, Hui Wen; Moland, Carrie L; Dial, Stacey L; Fang, Hong; Perkins, Roger; Sheehan, Daniel; Tong, Weida

2015-02-01

One endocrine disruption mechanism is through binding to nuclear receptors such as the androgen receptor (AR) and estrogen receptor (ER) in target cells. The concentration of a chemical in serum is important for its entry into the target cells to bind the receptors, which is regulated by the serum proteins. Human sex hormone-binding globulin (SHBG) is the major transport protein in serum that can bind androgens and estrogens and thus change a chemical's availability to enter the target cells. Sequestration of an androgen or estrogen in the serum can alter the chemical elicited AR- and ER-mediated responses. To better understand the chemical-induced endocrine activity, we developed a competitive binding assay using human pregnancy plasma and measured the binding to the human SHBG for 125 structurally diverse chemicals, most of which were known to bind AR and ER. Eighty seven chemicals were able to bind the human SHBG in the assay, whereas 38 chemicals were nonbinders. Binding data for human SHBG are compared with that for rat α-fetoprotein, ER and AR. Knowing the binding profiles between serum and nuclear receptors will improve assessment of a chemical's potential for endocrine disruption. The SHBG binding data reported here represent the largest data set of structurally diverse chemicals tested for human SHBG binding. Utilization of the SHBG binding data with AR and ER binding data could enable better evaluation of endocrine disrupting potential of chemicals through AR- and ER-mediated responses since sequestration in serum could be considered. Published by Oxford University Press on behalf of the Society of Toxicology 2014. This work is written by US Government employees and is in the public domain in the US.

Influence of Ar-irradiation on structural and nanomechanical properties of pure zirconium measured by means of GIXRD and nanoindentation techniques

NASA Astrophysics Data System (ADS)

Kurpaska, L.; Gapinska, M.; Jasinski, J.; Lesniak, M.; Sitarz, M.; Nowakowska-Langier, K.; Jagielski, J.; Wozniak, K.

2016-12-01

An effect of Ar-irradiation on structural and nanomechanical properties of pure zirconium at room temperature was investigated. In order to simulate the radiation damage, the argon ions were implanted into the pure zirconium coupons with fluences ranging from 1 × 1015 to 1 × 1017 cm-2. Prior to irradiation, zirconium samples were chemically polished with a solution of HF/HNO3/H2O. Structural properties of the implanted layer were studied using Grazing Incidence X-Ray Diffraction (GIXRD) technique. The nanomechanical properties of the material were measured by means of nanoindentation technique. The obtained results revealed correlation between Ar-implantation fluence, hardness and structural properties (as confirmed by the modification of the diffraction peaks). Material hardening and peak shift & broadening in GIXD spectra were associated with the local increase of micro-strains, which is related to the increased density of type - dislocation loops. Presented study confirms that the structural changes induced by ion irradiation are directly linked to the mechanical response of the sample.

Androgen receptor signaling and mutations in prostate cancer

PubMed Central

Koochekpour, Shahriar

2010-01-01

Normal and neoplastic growth of the prostate gland are dependent on androgen receptor (AR) expression and function. Androgenic activation of the AR, in association with its coregulatory factors, is the classical pathway that leads to transcriptional activity of AR target genes. Alternatively, cytoplasmic signaling crosstalk of AR by growth factors, neurotrophic peptides, cytokines or nonandrogenic hormones may have important roles in prostate carcinogenesis and in metastatic or androgen-independent (AI) progression of the disease. In addition, cross-modulation by various nuclear transcription factors acting through basal transcriptional machinery could positively or negatively affect the AR or AR target genes expression and activity. Androgen ablation leads to an initial favorable response in a significant number of patients; however, almost invariably patients relapse with an aggressive form of the disease known as castration-resistant or hormone-refractory prostate cancer (PCa). Understanding critical molecular events that lead PCa cells to resist androgen-deprivation therapy is essential in developing successful treatments for hormone-refractory disease. In a significant number of hormone-refractory patients, the AR is overexpressed, mutated or genomically amplified. These genetic alterations maintain an active presence for a highly sensitive AR, which is responsive to androgens, antiandrogens or nonandrogenic hormones and collectively confer a selective growth advantage to PCa cells. This review provides a brief synopsis of the AR structure, AR coregulators, posttranslational modifications of AR, duality of AR function in prostate epithelial and stromal cells, AR-dependent signaling, genetic changes in the form of somatic and germline mutations and their known functional significance in PCa cells and tissues. PMID:20711217

QuartetS-DB: A Large-Scale Orthology Database for Prokaryotes and Eukaryotes Inferred by Evolutionary Evidence

DTIC Science & Technology

2012-01-01

particular functions and identify species that contain these proteins. For example, if users select two species, Homo sapiens and Mus musculus, and...Kerr AR, McCormack TJ, Riley M: Evolution by leaps: gene duplication in bacteria. Biol Direct 2009, 4:46. 12. Remm M, Storm CE, Sonnhammer EL

Interaction mechanism exploration of R-bicalutamide/S-1 with WT/W741L AR using molecular dynamics simulations.

PubMed

Liu, Hongli; An, Xiaoli; Li, Shuyan; Wang, Yuwei; Li, Jiazhong; Liu, Huanxiang

2015-12-01

R-Bicalutamide is a first generation antiandrogen used to treat prostate cancer, which inhibits androgen action by competitively binding to the androgen receptor (AR). However, R-bicalutamide was discovered to exhibit some agonistic properties in clinical application. According to reports, the W741L AR mutation may lead to resistance towards R-bicalutamide. But the mechanism of the R-bicalutamide switch from an antagonist to an agonist due to the mutation of AR W741L is still not so clear. Another molecule, S-1, owing to a very similar structure to R-bicalutamide, is always agonistic to both the wild type and W741L AR. The main difference between these two chemicals is that S-1 has an ether linkage while R-bicalutamide has a sulfonyl group. To study the drug-resistant mechanism caused by W741L mutation and the opposite effects arising from subtle structure differences, molecular dynamics (MD) simulations and molecular mechanics generalized Born surface area (MM-GBSA) calculations were employed to explore the interaction mechanisms between R-bicalutamide/S-1 and WT/W741L AR. The calculated binding free energies are in accordance with the reported experimental values. The obtained results indicate that M895 and W741 are vital amino acids in the antagonism of R-bicalutamide. The bulkier substitution of sulfonyl and tryptophan push aside M895, together with helix 12 (H12), to expose the ligand-binding domain resulting in the antagonistic conformation of the AR. If W741 is mutated to L741, the B-ring of these two chemicals would shift toward L741. At the same time, M895 dragging helix H12, would also move closer to L741. So H12 tends to cover the AR ligand-binding domain to a certain degree, changing the androgen receptor from an antagonistic to an agonistic conformation, which may explain the agonism of R-bicalutamide to the mutant W741L AR.

Progress Towards Intersubband Quantum-Box Lasers for Highly Efficient Continuous Wave Operation in the Mid-Infrared

DTIC Science & Technology

2009-01-30

Fig. 7. ECV data for CH4/H2/Ar/Cl2/BCl3 and Cl2/ SiCl4 /Ar plasma etching. Ni < 1010/cm2. Subsequently, it was exposed to RIE...etching in either a CH4/H2/Ar/Cl2/BCl3 or a Cl2/ SiCl4 /Ar gas mixture which have been used to fabricate nanoposts for the IQB structures (see next...Argon +BCl3 as well as Inductive Coupled Plasma (ICP) etching using SiCl4 . Using both methods we were able to obtain 30-40 nm-diameter nanopoles on

Mound Laboratory activities for the Division of Physical Research: July--December 1975

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1976-05-14

Research and development are reported in the following areas: isotope separation and production for Ar, C, He, Kr, Ne, O, S, and Xe; testing of cubic B crystals for superconductivity; metal hydride research on band theory and electronic structure and spin-lattice relaxation times for VH/sub x/; separation chemistry of Pu, /sup 231/Pa, /sup 230/Th, /sup 229/Th, and /sup 234/U; adsorption of U and Pu by bone char; separation research for Ca and S isotopes; molecular beam scattering for Ar--Kr; and transport properties for the systems Ne--Ar, Ne--Kr, and Ar--Kr. (JSR)

Revised error propagation of 40Ar/39Ar data, including covariances

NASA Astrophysics Data System (ADS)

Vermeesch, Pieter

2015-12-01

The main advantage of the 40Ar/39Ar method over conventional K-Ar dating is that it does not depend on any absolute abundance or concentration measurements, but only uses the relative ratios between five isotopes of the same element -argon- which can be measured with great precision on a noble gas mass spectrometer. The relative abundances of the argon isotopes are subject to a constant sum constraint, which imposes a covariant structure on the data: the relative amount of any of the five isotopes can always be obtained from that of the other four. Thus, the 40Ar/39Ar method is a classic example of a 'compositional data problem'. In addition to the constant sum constraint, covariances are introduced by a host of other processes, including data acquisition, blank correction, detector calibration, mass fractionation, decay correction, interference correction, atmospheric argon correction, interpolation of the irradiation parameter, and age calculation. The myriad of correlated errors arising during the data reduction are best handled by casting the 40Ar/39Ar data reduction protocol in a matrix form. The completely revised workflow presented in this paper is implemented in a new software platform, Ar-Ar_Redux, which takes raw mass spectrometer data as input and generates accurate 40Ar/39Ar ages and their (co-)variances as output. Ar-Ar_Redux accounts for all sources of analytical uncertainty, including those associated with decay constants and the air ratio. Knowing the covariance matrix of the ages removes the need to consider 'internal' and 'external' uncertainties separately when calculating (weighted) mean ages. Ar-Ar_Redux is built on the same principles as its sibling program in the U-Pb community (U-Pb_Redux), thus improving the intercomparability of the two methods with tangible benefits to the accuracy of the geologic time scale. The program can be downloaded free of charge from http://redux.london-geochron.com.

P- T- t constraints on the development of the Doi Inthanon metamorphic core complex domain and implications for the evolution of the western gneiss belt, northern Thailand

NASA Astrophysics Data System (ADS)

Macdonald, A. S.; Barr, S. M.; Miller, B. V.; Reynolds, P. H.; Rhodes, B. P.; Yokart, B.

2010-01-01

The western gneiss belt in northern Thailand is exposed within two overlapping Cenozoic structural domains: the extensional Doi Inthanon metamorphic core complex domain located west of the Chiang Mai basin, and the Mae Ping strike-slip fault domain located west of the Tak batholith. New P- T estimates and U-Pb and 40Ar/ 39Ar age determinations from the Doi Inthanon domain show that the gneiss there records a complex multi-stage history that can be represented by a clockwise P- T- t path. U-Pb zircon and titanite dating of mylonitic calc-silicate gneiss from the Mae Wang area of the complex indicates that the paragneissic sequence experienced high-grade, medium-pressure metamorphism (M1) in the Late Triassic - Early Jurassic (ca. 210 Ma), in good agreement with previously determined zircon ages from the underlying core orthogneiss exposed on Doi Inthanon. Late Cretaceous monazite ages of 84 and 72 Ma reported previously from the core orthogneiss are attributed to a thermal overprint (M2) to upper-amphibolite facies in the sillimanite field. U-Pb zircon and monazite dating of granitic mylonite from the Doi Suthep area of the complex provides an upper age limit of 40 Ma (Late Eocene) for the early stage(s) of development of the actual core complex, by initially ductile, low-angle extensional shearing under lower amphibolite-facies conditions (M3), accompanied by near-isothermal diapiric rise and decompression melting. 40Ar/ 39Ar laserprobe dating of muscovite from both Doi Suthep and Doi Inthanon provided Miocene ages of ca. 26-15 Ma, representing cooling through the ca. 350 °C isotherm and marking late-stage development of the core complex by detachment faulting of the cover rocks and isostatic uplift of the sheared core zone and mantling gneisses in the footwall. Similarities in the thermochronology of high-grade gneisses exposed in the core complex and shear zone domains in the western gneiss belt of northern Thailand (and also in northern Vietnam, Laos, Yunnan, and central Myanmar) suggest a complex regional response to indentation of Southeast Asia by India.

Vibration-based damage detection in a concrete beam under temperature variations using AR models and state-space approaches

NASA Astrophysics Data System (ADS)

Clément, A.; Laurens, S.

2011-07-01

The Structural Health Monitoring of civil structures subjected to ambient vibrations is very challenging. Indeed, the variations of environmental conditions and the difficulty to characterize the excitation make the damage detection a hard task. Auto-regressive (AR) models coefficients are often used as damage sensitive feature. The presented work proposes a comparison of the AR approach with a state-space feature formed by the Jacobian matrix of the dynamical process. Since the detection of damage can be formulated as a novelty detection problem, Mahalanobis distance is applied to track new points from an undamaged reference collection of feature vectors. Data from a concrete beam subjected to temperature variations and damaged by several static loading are analyzed. It is observed that the damage sensitive features are effectively sensitive to temperature variations. However, the use of the Mahalanobis distance makes possible the detection of cracking with both of them. Early damage (before cracking) is only revealed by the AR coefficients with a good sensibility.

Effect of Ar{sup +} ion irradiation on the microstructure of pyrolytic carbon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Feng, Shanglei; Zhang, Dongsheng; Yang, Xinmei

2015-03-21

Pyrolytic carbon (PyC) coatings prepared by chemical vapor deposition were irradiated by 300 keV Ar{sup +} ions. Then, atomic force microscopy, synchrotron-based grazing incidence X-ray diffraction, Raman spectroscopy, X-ray photoemission spectroscopy, and transmission electron microscopy were employed to study how Ar{sup +} irradiation affects the microstructure of PyC, including the microstructural damage mechanisms and physics driving these phenomena. The 300 keV Ar{sup +} ion irradiation deteriorated the structure along the c-axis, which increased the interlayer spacing between graphene layers. With increasing irradiation dose, the density of defect states on the surface of PyC coating increases, and the basal planes gradually loses theirmore » initial ordering resulting in breaks in the lattice and turbulence at the peak damage dose reaches 1.58 displacement per atom (dpa). Surprisingly, the PyC becomes more textured as it becomes richer in structural defects with increasing irradiation dose.« less

Cenozoic Structural and Stratigraphic Evolution of the Ulukışla and Sivas Basins (Central and Eastern Turkey)

NASA Astrophysics Data System (ADS)

Gürer, Derya; Darin, Michael H.; van Hinsbergen, Douwe J. J.; Umhoefer, Paul J.

2017-04-01

Because subduction is a destructive process, the surface record of subduction-dominated systems is naturally incomplete. Sedimentary basins may hold the most complete record of processes related to subduction, accretion, collision, and ocean closure, and thus provide key information for understanding the kinematic evolution of orogens. In central and eastern Anatolia, the Late Cretaceous-Paleogene stratigraphic record of the Ulukışla and Sivas basins supports the hypothesis that these once formed a contiguous basin. Importantly, their age and geographic positions relative to their very similar basement units and ahead of the Arabian indenter provide a critical record of pre-, syn- and post-collisional processes in the Anatolian Orogen. The Ulukışla-Sivas basin was dissected and translated along the major left-lateral Ecemiş fault zone. Since then, the basins on either side of the fault evolved independently, with considerably more plate convergence accommodated to the east in the Sivas region (eastern Anatolia) than in the Ulukışla region (central Anatolia). This led to the deformation of marine sediments and underlying ophiolites and structural growth of the Sivas Fold-and-Thrust Belt (SSFTB) since latest Eocene time, which played a major role in marine basin isolation and disconnection, along with a regionally important transition to continental conditions with evaporite deposition starting in the early Oligocene. We use geologic mapping, fault kinematic analysis, paleomagnetism, apatite fission track (AFT) thermochronology, and 40Ar/39Ar geochronology to characterize the architecture, deformation style, and structural evolution of the region. In the Ulukışla basin, dominantly E-W trending normal faults became folded or inverted due to N-S contraction since the Lutetian (middle Eocene). This was accompanied by significant counter-clockwise rotations, and post-Lutetian burial of the Niǧde Massif along the transpressional Ecemiş fault zone. Since Miocene time, the Ecemiş fault zone has been active as an extensional structure responsible for the re-exhumation of the Niǧde Massif in its footwall. To the east and in front of the Arabian indenter, the Sivas Basin evolved during Paleogene collision of the Tauride micro-continent (Africa) with the Pontides (Eurasia), but prior to Arabia collision. The thin-skinned SSFTB is a >300 km-long by 30 km-wide E-W-elongate, convex-north arcuate belt of compressional structures in Late Cretaceous to Miocene strata. It is characterized by NE- to E-trending upright folds with slight northward asymmetry, south-dipping thrust faults, and overturned folds in Paleogene strata indicating predominantly northward vergence. Several thrusts are south-vergent, typically displacing younger (Miocene) units. Structural relationships and AFT data reveal a sequence of initial crustal shortening and rapid exhumation in the late Eocene and Oligocene, an early-middle Miocene phase of relative tectonic quiescence and regional unconformity development, and a final episode of contraction during the late Miocene. Pliocene and younger units are only locally deformed by either halokinesis or transpression along diffuse and low-strain faults. Paleomagnetic data from the SSFTB reveal significant counter-clockwise rotations since Eocene time. Miocene strata north of the SSFTB consistently show moderate clockwise rotations. Our results indicate that collision-related growth of the orogen ended by the latest Miocene, coeval with or shortly after initiation of the North Anatolian fault zone.

Instability and associated roll structure of Marangoni convection in high Prandtl number liquid bridge with large aspect ratio

NASA Astrophysics Data System (ADS)

Yano, T.; Nishino, K.; Kawamura, H.; Ueno, I.; Matsumoto, S.

2015-02-01

This paper reports the experimental results on the instability and associated roll structures (RSs) of Marangoni convection in liquid bridges formed under the microgravity environment on the International Space Station. The geometry of interest is high aspect ratio (AR = height/diameter ≥ 1.0) liquid bridges of high Prandtl number fluids (Pr = 67 and 207) suspended between coaxial disks heated differentially. The unsteady flow field and associated RSs were revealed with the three-dimensional particle tracking velocimetry. It is found that the flow field after the onset of instability exhibits oscillations with azimuthal mode number m = 1 and associated RSs traveling in the axial direction. The RSs travel in the same direction as the surface flow (co-flow direction) for 1.00 ≤ AR ≤ 1.25 while they travel in the opposite direction (counter-flow direction) for AR ≥ 1.50, thus showing the change of traveling directions with AR. This traveling direction for AR ≥ 1.50 is reversed to the co-flow direction when the temperature difference between the disks is increased to the condition far beyond the critical one. This change of traveling directions is accompanied by the increase of the oscillation frequency. The characteristics of the RSs for AR ≥ 1.50, such as the azimuthal mode of oscillation, the dimensionless oscillation frequency, and the traveling direction, are in reasonable agreement with those of the previous sounding rocket experiment for AR = 2.50 and those of the linear stability analysis of an infinite liquid bridge.

10 years of protein crystallography at AR-NW12A beamline

NASA Astrophysics Data System (ADS)

Chavas, L. M. G.; Yamada, Y.; Hiraki, M.; Igarashi, N.; Matsugaki, N.; Wakatsuki, S.

2013-03-01

The exponential growth of protein crystallography can be observed in the continuously increasing demand for synchrotron beam time, both from academic and industrial users. Nowadays, the screening of a profusion of sample crystals for more and more projects is being implemented by taking advantage of fully automated procedures at every level of the experiments. The insertion device AR-NW12A beamline is one of the five macromolecular crystallography (MX) beamlines at the Photon Factory (PF). Currently the oldest MX beamline operational at the High Energy Accelerator Research Organization (KEK), the end-station was launched in 2001 as part of an upgrade of the PF Advanced Ring. Since its commissioning, AR-NW12A has been operating as a high-throughput beamline, slowly evolving to a multipurpose end-station for MX experiments. The development of the beamline took place about a decade ago, in parallel with a drastic development of protein crystallography and more general synchrotron technology. To keep the beamline up-to-date and competitive with other MX stations in Japan and worldwide, new features have been constantly added, with the goal of user friendliness of the various beamline optics and other instruments. Here we describe the evolution of AR-NW12A for its tenth anniversary. We also discuss the plans for upgrades for AR-NW12A, the future objectives in terms of the beamline developments, and especially the strong desire to open the beamline to a larger user community.

Geochemical evidence of mantle reservoir evolution during progressive rifting along the western Afar margin

NASA Astrophysics Data System (ADS)

Rooney, Tyrone O.; Mohr, Paul; Dosso, Laure; Hall, Chris

2013-02-01

The Afar triple junction, where the Red Sea, Gulf of Aden and African Rift System extension zones converge, is a pivotal domain for the study of continental-to-oceanic rift evolution. The western margin of Afar forms the southernmost sector of the western margin of the Red Sea rift where that margin enters the Ethiopian flood basalt province. Tectonism and volcanism at the triple junction had commenced by ˜31 Ma with crustal fissuring, diking and voluminous eruption of the Ethiopian-Yemen flood basalt pile. The dikes which fed the Oligocene-Quaternary lava sequence covering the western Afar rift margin provide an opportunity to probe the geochemical reservoirs associated with the evolution of a still active continental margin. 40Ar/39Ar geochronology reveals that the western Afar margin dikes span the entire history of rift evolution from the initial Oligocene flood basalt event to the development of focused zones of intrusion in rift marginal basins. Major element, trace element and isotopic (Sr-Nd-Pb-Hf) data demonstrate temporal geochemical heterogeneities resulting from variable contributions from the Afar plume, depleted asthenospheric mantle, and African lithosphere. The various dikes erupted between 31 Ma and 22 Ma all share isotopic signatures attesting to a contribution from the Afar plume, indicating this initial period in the evolution of the Afar margin was one of magma-assisted weakening of the lithosphere. From 22 Ma to 12 Ma, however, diffuse diking during continued evolution of the rift margin facilitated ascent of magmas in which depleted mantle and lithospheric sources predominated, though contributions from the Afar plume persisted. After 10 Ma, magmatic intrusion migrated eastwards towards the Afar rift floor, with an increasing fraction of the magmas derived from depleted mantle with less of a lithospheric signature. The dikes of the western Afar margin reveal that magma generation processes during the evolution of this continental rift margin are increasingly dominated by shallow decompressional melting of the ambient asthenosphere, the composition of which may in part be controlled by preferential channeling of plume material along the developing neo-oceanic axes of extension.

Self-organized, effective medium black silicon antireflection structures for silicon optics in the mid-infrared

NASA Astrophysics Data System (ADS)

Steglich, Martin; Käsebier, Thomas; Kley, Ernst-Bernhard; Tünnermann, Andreas

2016-09-01

Thanks to its high quality and low cost, silicon is the material of choice for optical devices operating in the mid-infrared (MIR; 2 μm to 6 μm wavelength). Unfortunately in this spectral region, the refractive index is comparably high (about 3.5) and leads to severe reflection losses of about 30% per interface. In this work, we demonstrate that self-organized, statistical Black Silicon structures, fabricated by Inductively Coupled Plasma Reactive Ion Etching (ICP-RIE), can be used to effectively suppress interface reflection. More importantly, it is shown that antireflection can be achieved in an image-preserving, non-scattering way. This enables Black Silicon antireflection structures (ARS) for imaging applications in the MIR. It is demonstrated that specular transmittances of 97% can be easily achieved on both flat and curved substrates, e.g. lenses. Moreover, by a combined optical and morphological analysis of a multitude of different Black Silicon ARS, an effective medium criterion for the examined structures is derived that can also be used as a design rule for maximizing sample transmittance in a desired wavelength range. In addition, we show that the mechanical durability of the structures can be greatly enhanced by coating with hard dielectric materials like diamond-like carbon (DLC), hence enabling practical applications. Finally, the distinct advantages of statistical Black Silicon ARS over conventional AR layer stacks are discussed: simple applicability to topological substrates, absence of thermal stress and cost-effectiveness.

Particle visualization in high-power impulse magnetron sputtering. II. Absolute density dynamics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Britun, Nikolay, E-mail: nikolay.britun@umons.ac.be; Palmucci, Maria; Konstantinidis, Stephanos

2015-04-28

Time-resolved characterization of an Ar-Ti high-power impulse magnetron sputtering discharge has been performed. The present, second, paper of the study is related to the discharge characterization in terms of the absolute density of species using resonant absorption spectroscopy. The results on the time-resolved density evolution of the neutral and singly-ionized Ti ground state atoms as well as the metastable Ti and Ar atoms during the discharge on- and off-time are presented. Among the others, the questions related to the inversion of population of the Ti energy sublevels, as well as to re-normalization of the two-dimensional density maps in terms ofmore » the absolute density of species, are stressed.« less

Examination of the Entry to Burn and Burn Control for the ITER 15 MA Baseline and Other Scenarios

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kesse, Charles E.; Kim, S-H.; Koechl, F.

2014-09-01

The entry to burn and flattop burn control in ITER will be a critical need from the first DT experiments. Simulations are used to address time-dependent behavior under a range of possible conditions that include injected power level, impurity content (W, Ar, Be), density evolution, H-mode regimes, controlled parameter (Wth, Pnet, Pfusion), and actuator (Paux, fueling, fAr), with a range of transport models. A number of physics issues at the L-H transition require better understanding to project to ITER, however, simulations indicate viable control with sufficient auxiliary power (up to 73 MW), while lower powers become marginal (as low asmore » 43 MW).« less

11th IUBMB Focused Meeting on the Aminoacyl-tRNA Synthetases: Sailing a New Sea of Complex Functions in Human Biology and Disease.

PubMed

Francklyn, Christopher; Roy, Herve; Alexander, Rebecca

2018-05-01

The 11th IUBMB Focused Meeting on Aminoacyl-tRNA Synthetases was held in Clearwater Beach, Florida from 29 October⁻2 November 2017, with the aim of presenting the latest research on these enzymes and promoting interchange among aminoacyl-tRNA synthetase (ARS) researchers. Topics covered in the meeting included many areas of investigation, including ARS evolution, mechanism, editing functions, biology in prokaryotic and eukaryotic cells and their organelles, their roles in human diseases, and their application to problems in emerging areas of synthetic biology. In this report, we provide a summary of the major themes of the meeting, citing contributions from the oral presentations in the meeting.

A functional selectivity mechanism at the serotonin-2A GPCR involves ligand-dependent conformations of intracellular loop 2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Perez-Aguilar, Jose Manuel; Shan, Jufang; LeVine, Michael V.

With recent progress in determination of G protein-coupled receptor (GPCR) structure with crystallography, a variety of other experimental approaches (e.g., NMR spectroscopy, fluorescent-based assays, mass spectrometry techniques) are also being used to characterize state-specific and ligand-specific conformational states. MD simulations offer a powerful complementary approach to elucidate the dynamic features associated with ligand-specific GPCR conformations. To shed light on the conformational elements and dynamics of the important aspect of GPCR functional selectivity, we carried out unbiased microsecond-length MD simulations of the human serotonin 2A receptor (5-HT 2AR) in the absence of ligand and bound to four distinct serotonergic agonists. Themore » 5-HT 2AR is a suitable system to study the structural features involved in the ligand-dependent conformational heterogeneity of GPCRs because it is well-characterized experimentally and exhibits a strong agonist-specific phenotype in that some 5-HT 2AR agonists induce LSD-like hallucinations, while others lack this psychoactive property entirely. Here we report evidence for structural and dynamic differences in 5-HT 2AR interacting with such pharmacologically distinct ligands, hallucinogens, and nonhallucinogens obtained from all-atom MD simulations. Differential ligand binding contacts were identified for structurally similar hallucinogens and nonhallucinogens and found to correspond to different conformations in the intracellular loop 2 (ICL2). From the different ICL2 conformations, functional selective phenotypes are suggested through effects on dimerization and/or distinct direct interaction with effector proteins. Lastly, the findings are presented in the context of currently proposed hallucinogenesis mechanisms, and ICL2 is proposed as a fine-tuning selective switch that can differentiates modes of 5-HT 2AR activation.« less

A functional selectivity mechanism at the serotonin-2A GPCR involves ligand-dependent conformations of intracellular loop 2

DOE PAGES

Perez-Aguilar, Jose Manuel; Shan, Jufang; LeVine, Michael V.; ...

2014-10-14

With recent progress in determination of G protein-coupled receptor (GPCR) structure with crystallography, a variety of other experimental approaches (e.g., NMR spectroscopy, fluorescent-based assays, mass spectrometry techniques) are also being used to characterize state-specific and ligand-specific conformational states. MD simulations offer a powerful complementary approach to elucidate the dynamic features associated with ligand-specific GPCR conformations. To shed light on the conformational elements and dynamics of the important aspect of GPCR functional selectivity, we carried out unbiased microsecond-length MD simulations of the human serotonin 2A receptor (5-HT 2AR) in the absence of ligand and bound to four distinct serotonergic agonists. Themore » 5-HT 2AR is a suitable system to study the structural features involved in the ligand-dependent conformational heterogeneity of GPCRs because it is well-characterized experimentally and exhibits a strong agonist-specific phenotype in that some 5-HT 2AR agonists induce LSD-like hallucinations, while others lack this psychoactive property entirely. Here we report evidence for structural and dynamic differences in 5-HT 2AR interacting with such pharmacologically distinct ligands, hallucinogens, and nonhallucinogens obtained from all-atom MD simulations. Differential ligand binding contacts were identified for structurally similar hallucinogens and nonhallucinogens and found to correspond to different conformations in the intracellular loop 2 (ICL2). From the different ICL2 conformations, functional selective phenotypes are suggested through effects on dimerization and/or distinct direct interaction with effector proteins. Lastly, the findings are presented in the context of currently proposed hallucinogenesis mechanisms, and ICL2 is proposed as a fine-tuning selective switch that can differentiates modes of 5-HT 2AR activation.« less

MODELING STATISTICAL PROPERTIES OF SOLAR ACTIVE REGIONS THROUGH DIRECT NUMERICAL SIMULATIONS OF 3D-MHD TURBULENCE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Malapaka, Shiva Kumar; Mueller, Wolf-Christian

Statistical properties of the Sun's photospheric turbulent magnetic field, especially those of the active regions (ARs), have been studied using the line-of-sight data from magnetograms taken by the Solar and Heliospheric Observatory and several other instruments. This includes structure functions and their exponents, flatness curves, and correlation functions. In these works, the dependence of structure function exponents ({zeta}{sub p}) of the order of the structure functions (p) was modeled using a non-intermittent K41 model. It is now well known that the ARs are highly turbulent and are associated with strong intermittent events. In this paper, we compare some of themore » observations from Abramenko et al. with the log-Poisson model used for modeling intermittent MHD turbulent flows. Next, we analyze the structure function data obtained from the direct numerical simulations (DNS) of homogeneous, incompressible 3D-MHD turbulence in three cases: sustained by forcing, freely decaying, and a flow initially driven and later allowed to decay (case 3). The respective DNS replicate the properties seen in the plots of {zeta}{sub p} against p of ARs. We also reproduce the trends and changes observed in intermittency in flatness and correlation functions of ARs. It is suggested from this analysis that an AR in the onset phase of a flare can be treated as a forced 3D-MHD turbulent system in its simplest form and that the flaring stage is representative of decaying 3D-MHD turbulence. It is also inferred that significant changes in intermittency from the initial onset phase of a flare to its final peak flaring phase are related to the time taken by the system to reach the initial onset phase.« less

Growing magma chambers control the distribution of small-scale flood basalts.

PubMed

Yu, Xun; Chen, Li-Hui; Zeng, Gang

2015-11-19

Small-scale continental flood basalts are a global phenomenon characterized by regular spatio-temporal distributions. However, no genetic mechanism has been proposed to explain the visible but overlooked distribution patterns of these continental basaltic volcanism. Here we present a case study from eastern China, combining major and trace element analyses with Ar-Ar and K-Ar dating to show that the spatio-temporal distribution of small-scale flood basalts is controlled by the growth of long-lived magma chambers. Evolved basalts (SiO2 > 47.5 wt.%) from Xinchang-Shengzhou, a small-scale Cenozoic flood basalt field in Zhejiang province, eastern China, show a northward younging trend over the period 9.4-3.0 Ma. With northward migration, the magmas evolved only slightly ((Na2O + K2O)/MgO = 0.40-0.66; TiO2/MgO = 0.23-0.35) during about 6 Myr (9.4-3.3 Ma). When the flood basalts reached the northern end of the province, the magmas evolved rapidly (3.3-3.0 Ma) through a broad range of compositions ((Na2O + K2O)/MgO = 0.60-1.28; TiO2/MgO = 0.30-0.57). The distribution and two-stage compositional evolution of the migrating flood basalts record continuous magma replenishment that buffered against magmatic evolution and induced magma chamber growth. Our results demonstrate that the magma replenishment-magma chamber growth model explains the spatio-temporal distribution of small-scale flood basalts.

Aldose reductase inhibitory compounds from Xanthium strumarium.

PubMed

Yoon, Ha Na; Lee, Min Young; Kim, Jin-Kyu; Suh, Hong-Won; Lim, Soon Sung

2013-09-01

As part of our ongoing search for natural sources of therapeutic and preventive agents for diabetic complications, we evaluated the inhibitory effects of components of the fruit of Xanthium strumarium (X. strumarium) on aldose reductase (AR) and galactitol formation in rat lenses with high levels of glucose. To identify the bioactive components of X. strumarium, 7 caffeoylquinic acids and 3 phenolic compounds were isolated and their chemical structures were elucidated on the basis of spectroscopic evidence and comparison with published data. The abilities of 10 X. strumarium-derived components to counteract diabetic complications were investigated by means of inhibitory assays with rat lens AR (rAR) and recombinant human AR (rhAR). From the 10 isolated compounds, methyl-3,5-di-O-caffeoylquinate showed the most potent inhibition, with IC₅₀ values of 0.30 and 0.67 μM for rAR and rhAR, respectively. In the kinetic analyses using Lineweaver-Burk plots of 1/velocity and 1/substrate, methyl-3,5-di-O-caffeoylquinate showed competitive inhibition of rhAR. Furthermore, methyl-3,5-di-O-caffeoylquinate inhibited galactitol formation in the rat lens and in erythrocytes incubated with a high concentration of glucose, indicating that this compound may be effective in preventing diabetic complications.

SUB-SURFACE MERIDIONAL FLOW, VORTICITY, AND THE LIFETIME OF SOLAR ACTIVE REGIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maurya, R. A.; Ambastha, A., E-mail: ramajor@prl.res.i, E-mail: ambastha@prl.res.i

Solar sub-surface fluid topology provides an indirect approach to examine the internal characteristics of active regions (ARs). Earlier studies have revealed the prevalence of strong flows in the interior of ARs having complex magnetic fields. Using the Doppler data obtained by the Global Oscillation Network Group project for a sample of 74 ARs, we have discovered the presence of steep gradients in meridional velocity at depths ranging from 1.5 to 5 Mm in flare productive ARs. The sample of these ARs is taken from the Carrington rotations 1980-2052 covering the period 2001 August-2007 January. The gradients showed an interesting hemisphericmore » trend of negative (positive) signs in the northern (southern) hemisphere, i.e., directed toward the equator. We have discovered three sheared layers in the depth range of 0-10 Mm, providing evidence of complex flow structures in several ARs. An important inference derived from our analysis is that the location of the deepest zero vertical vorticity is correlated with the remaining lifetime of ARs. This new finding may be employed as a tool for predicting the life expectancy of an AR.« less

The tectono-thermal evolution of the Waterbury dome, western Connecticut, based on U-Pb and 40Ar/39Ar ages

USGS Publications Warehouse

Dietsch, Craig; Kunk, Michael J.; Aleinikoff, John; Sutter, John F.

2010-01-01

Level 3 nappes were emplaced over the Waterbury dome along an Acadian décollement synchronous with the formation of a D3 thrust duplex in the dome. The décollement truncates the Ky + Kfs-in (migmatite) isograd in the dome core and a St-in isograd in level 3 nappes, indicating that peak metamorphic conditions in the dome core and nappe cover rocks formed in different places at different times. Metamorphic overgrowths on zircon from the felsic orthogneiss in the Waterbury dome have an age of 387 ± 5 Ma. Rocks of all levels and the décollement are folded by D4 folds that have a strongly developed, regional crenulation cleavage and D5 folds. The Waterbury dome was formed by thrust duplexing followed by fold interference during the Acadian orogeny. The 40Ar/39Ar ages of amphibole, muscovite, biotite, and K-feldspar from above and below the décollement are ca. 378 Ma, 355 Ma, 360 Ma (above) and 340 (below), and 288 Ma, respectively. Any kilometer-scale vertical movements between dome and nappe rocks were over by ca. 378 Ma. Core and cover rocks of the Waterbury dome record synchronous, post-Acadian cooling.

Earth-Moon Impacts at 300 Ma and 500 Ma Ago

NASA Technical Reports Server (NTRS)

Zellner, N. E. B.; Delano, J. W.; Swindle, T. D.; Barra, F.; Whittet, D. C. B.; Spudis, P. D.

2005-01-01

Impact events have played an important role in the evolution of planets and small bodies in the Solar System. Meteorites, lunar melt rocks, and lunar impact glasses provide important information about the geology of the parent body and the age of the impacting episodes. Over 2400 impact glasses from 4 Apollo regolith samples have been geochemically analyzed and a subset has been dated by the (40)Ar/(39)Ar method. New results, consistent with 2 break-ups in the Asteroid Belt, are presented here. Our previous study reported that (40)Ar/(39)Ar ages from 9 impact glasses showed that the Moon experienced significant impacts at approx. 800 Ma and at approx. 3800 Ma ago, somewhere in the vicinity of the Apollo 16 landing site. Additionally, reported on Apollo 12 samples with ages around 800 Ma, together implying global bombardment events. New data on 7 glasses from regolith sample 66041,127 show that the Moon also experienced impact events at approx. 300 Ma and > 500 Ma ago, which may coincide with the break-ups in the Asteroid Belt of the L- and H-chrondrite parent bodies. Since meteoritic evidence for these breakups has been found on Earth, it follows that evidence should be found in lunar samples as well. Additional information is included in the original extended abstract.

Argon isotopic composition of Archaean atmosphere probes early Earth geodynamics.

PubMed

Pujol, Magali; Marty, Bernard; Burgess, Ray; Turner, Grenville; Philippot, Pascal

2013-06-06

Understanding the growth rate of the continental crust through time is a fundamental issue in Earth sciences. The isotopic signatures of noble gases in the silicate Earth (mantle, crust) and in the atmosphere afford exceptional insight into the evolution through time of these geochemical reservoirs. However, no data for the compositions of these reservoirs exists for the distant past, and temporal exchange rates between Earth's interior and its surface are severely under-constrained owing to a lack of samples preserving the original signature of the atmosphere at the time of their formation. Here, we report the analysis of argon in Archaean (3.5-billion-year-old) hydrothermal quartz. Noble gases are hosted in primary fluid inclusions containing a mixture of Archaean freshwater and hydrothermal fluid. Our analysis reveals Archaean atmospheric argon with a (40)Ar/(36)Ar value of 143 ± 24, lower than the present-day value of 298.6 (for which (40)Ar has been produced by the radioactive decay of the potassium isotope (40)K, with a half-life of 1.25 billion years; (36)Ar is primordial in origin). This ratio is consistent with an early development of the felsic crust, which might have had an important role in climate variability during the first half of Earth's history.

Long-term evolution of an Oligocene/Miocene maar lake from Otago, New Zealand

NASA Astrophysics Data System (ADS)

Fox, B. R. S.; Wartho, J.; Wilson, G. S.; Lee, D. E.; Nelson, F. E.; Kaulfuss, U.

2015-01-01

Foulden Maar is a highly resolved maar lake deposit from the South Island of New Zealand comprising laminated diatomite punctuated by numerous diatomaceous turbidites. Basaltic clasts found in debris flow deposits near the base of the cored sedimentary sequence yielded two new 40Ar/39Ar dates of 24.51 ± 0.24 and 23.38 ± 0.24 Ma (2σ). The younger date agrees within error with a previously published 40Ar/39Ar date of 23.17 ± 0.19 Ma from a basaltic dyke adjacent to the maar crater. The diatomite is inferred to have been deposited over several tens of thousands of years in the latest Oligocene/earliest Miocene, and may have been coeval with the period of rapid glaciation and subsequent deglaciation of Antarctica known as the Mi-1 event. Sediment magnetic properties and SEM measurements indicate that the magnetic signal is dominated by pseudo-single domain pyrrhotite. The most likely source of detrital pyrrhotite is schist country rock fragments from the inferred tephra ring created by the phreatomagmatic eruption that formed the maar. Variations in magnetic mineral concentration indicate a decrease in erosional input throughout the depositional period, suggesting long-term (tens of thousands of years) environmental change in New Zealand in the latest Oligocene/earliest Miocene.

Divergent agonist selectivity in activating β1- and β2-adrenoceptors for G-protein and arrestin coupling.

PubMed

Casella, Ida; Ambrosio, Caterina; Grò, Maria Cristina; Molinari, Paola; Costa, Tommaso

2011-08-15

The functional selectivity of adrenergic ligands for activation of β1- and β2-AR (adrenoceptor) subtypes has been extensively studied in cAMP signalling. Much less is known about ligand selectivity for arrestin-mediated signalling pathways. In the present study we used resonance energy transfer methods to compare the ability of β1- and β2-ARs to form a complex with the G-protein β-subunit or β-arrestin-2 in response to a variety of agonists with various degrees of efficacy. The profiles of β1-/β2-AR selectivity of the ligands for the two receptor-transducer interactions were sharply different. For G-protein coupling, the majority of ligands were more effective in activating the β2-AR, whereas for arrestin coupling the relationship was reversed. These data indicate that the β1-AR interacts more efficiently than β2-AR with arrestin, but less efficiently than β2-AR with G-protein. A group of ligands exhibited β1-AR-selective efficacy in driving the coupling to arrestin. Dobutamine, a member of this group, had 70% of the adrenaline (epinephrine) effect on arrestin via β1-AR, but acted as a competitive antagonist of adrenaline via β2-AR. Thus the structure of such ligands appears to induce an arrestin-interacting form of the receptor only when bound to the β1-AR subtype. © The Authors Journal compilation © 2011 Biochemical Society

Expression profiles and functional associations of endogenous androgen receptor and caveolin-1 in prostate cancer cell lines.

PubMed

Bennett, Nigel C; Hooper, John D; Johnson, David W; Gobe, Glenda C

2014-05-01

In prostate cancer (PCa) patients, the protein target for androgen deprivation and blockade therapies is androgen receptor (AR). AR interacts with many proteins that function to either co-activate or co-repress its activity. Caveolin-1 (Cav-1) is not found in normal prostatic epithelium, but is found in PCa, and may be an AR co-regulator protein. We investigated cell line-specific signatures and associations of endogenous AR and Cav-1 in six PCa cell lines of known androgen sensitivity: LNCaP (androgen sensitive); 22Rv1 (androgen responsive); PC3, DU145, and ALVA41 (androgen non-reliant); and RWPE1 (non-malignant). Protein and mRNA expression profiles were compared and electron microscopy used to identify cells with caveolar structures. For cell lines expressing both AR and Cav-1, knockdown techniques using small interfering RNA against AR or Cav-1 were used to test whether diminished expression of one affected the other. Co-sedimentation of AR and Cav-1 was used to test their association. A reporter assay for AR genomic activity was utilized following Cav-1 knockdown. AR-expressing LNCaP and 22Rv1 cells had low endogenous Cav-1 mRNA and protein. Cell lines that expressed little or no AR (DU145, PC3, ALVA41, and RWPE1) expressed high endogenous levels of Cav-1. AR knockdown in LNCaP cells had little effect on Cav-1, but Cav-1 knockdown inhibited AR expression and genomic activity. These data show endogenous AR and Cav-1 mRNA and protein expression is inversely related in PCa cells, with Cav-1 acting on the androgen/AR signaling axis possibly as an AR co-activator, demonstrated by diminished AR genomic activity following Cav-1 knockdown. © 2013 Wiley Periodicals, Inc.

Interatomic scattering in energy dependent photoelectron spectra of Ar clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Patanen, M.; Benkoula, S.; Nicolas, C.

2015-09-28

Soft X-ray photoelectron spectra of Ar 2p levels of atomic argon and argon clusters are recorded over an extended range of photon energies. The Ar 2p intensity ratios between atomic argon and clusters’ surface and bulk components reveal oscillations similar to photoelectron extended X-ray absorption fine structure signal (PEXAFS). We demonstrate here that this technique allows us to analyze separately the PEXAFS signals from surface and bulk sites of free-standing, neutral clusters, revealing a bond contraction at the surface.

Evidence for pressure-tuned quantum structural fluctuations in KCuF3

NASA Astrophysics Data System (ADS)

Yuan, S.; Kim, M.; Seeley, J.; Lal, S.; Abbamonte, P.; Cooper, S. L.

2012-02-01

Frustrated magnetic systems are currently of great interest because of the possibility that these materials exhibit novel ground states such as orbital and spin liquids. We provide evidence in the orbital-ordering material KCuF3 for pressure-tuned quantum melting of a static structural phase to a phase that dynamically fluctuates even near T ˜ 0K.[1] Pressure-dependent Raman scattering measurements show that applied pressure above P* ˜ 7kbar reverses a low temperature structural distortion in KCuF3, resulting in the development of a φ ˜ 0 fluctuational (quasielastic) response near T ˜ 0K. This pressure-induced fluctuational response is temperature independent and exhibits a characteristic fluctuation rate that is much larger than the temperature, γ >> KBT, consistent with quantum fluctuations of the CuF6 octahedra. We show that a previous developed model of pseudospin-phonon coupling qualitatively describes both the temperature- and pressure-dependent evolution of the Raman spectra of KCuF3. Work supported by the U.S. Department of Energy under Award No. DE-FG02-07ER46453 and by the National Science Foundation under Grant NSF DMR 08-56321. [4pt] [1] S. Yuan et al., arXiv:1107.1433 (2011).

WHY IS A FLARE-RICH ACTIVE REGION CME-POOR?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Lijuan; Wang, Yuming; Shen, Chenglong

Solar active regions (ARs) are the major sources of two of the most violent solar eruptions, namely flares and coronal mass ejections (CMEs). The largest AR in the past 24 years, NOAA AR 12192, which crossed the visible disk from 2014 October 17 to 30, unusually produced more than one hundred flares, including 32 M-class and 6 X-class ones, but only one small CME. Flares and CMEs are believed to be two phenomena in the same eruptive process. Why is such a flare-rich AR so CME-poor? We compared this AR with other four ARs; two were productive in both andmore » two were inert. The investigation of the photospheric parameters based on the SDO /HMI vector magnetogram reveals that the flare-rich AR 12192, as with the other two productive ARs, has larger magnetic flux, current, and free magnetic energy than the two inert ARs but, in contrast to the two productive ARs, it has no strong, concentrated current helicity along both sides of the flaring neutral line, indicating the absence of a mature magnetic structure consisting of highly sheared or twisted field lines. Furthermore, the decay index above the AR 12192 is relatively low, showing strong constraint. These results suggest that productive ARs are always large and have enough current and free energy to power flares, but whether or not a flare is accompanied by a CME is seemingly related to (1) the presence of a mature sheared or twisted core field serving as the seed of the CME, or (2) a weak enough constraint of the overlying arcades.« less

New insights on lithofacies architecture, sedimentological characteristics and volcanological evolution of pre-caldera (> 22 ka), multi-phase, scoria- and spatter-cones at Somma-Vesuvius

NASA Astrophysics Data System (ADS)

Sparice, Domenico; Scarpati, Claudio; Perrotta, Annamaria; Mazzeo, Fabio Carmine; Calvert, Andrew T.; Lanphere, Marvin A.

2017-11-01

Pre-caldera (> 22 ka) lateral activity at Somma-Vesuvius is related to scoria- and spatter-cone forming events of monogenetic or polygenetic nature. A new stratigraphic, sedimentological, textural and lithofacies investigation was performed on five parasitic cones (Pollena cones, Traianello cone, S. Maria a Castello cone and the recently found Terzigno cone) occurring below the Pomici di Base (22 ka) Plinian products emplaced during the first caldera collapse at Somma-Vesuvius. A new Ar/Ar age of 23.6 ± 0.3 ka obtained for the Traianello cone as well as the absence of a paleosol or reworked material between the S. Maria a Castello cone and the Pomici di Base deposits suggest that such cone-forming eruptions occurred near the upper limit of the pre-caldera period (22-39 ky). The stratigraphy of three of these eccentric cones (Pollena cones and Traianello cone) exhibits erosion surfaces, exotic tephras, volcaniclastic layers, paleosols, unconformity and paraconformity between superimposed eruptive units revealing their multi-phase, polygenetic evolution related to activation of separate vents and periods of quiescence. Such eccentric cones have been described as composed of scoria deposits and pure effusive lavas by previous authors. Lavas are here re-interpreted as welded horizons (lava-like) composed of coalesced spatter fragments whose pyroclastic nature is locally revealed by relicts of original fragments and remnants of clast outlines. These welded horizons show, locally, rheomorphic structures allowing to define them as emplaced as clastogenic lava flows. The lava-like facies is transitional, upward and downward, to less welded facies composed of agglutinated to unwelded spatter horizons in which clasts outlines are increasingly discernible. Such textural characteristics and facies variation are consistent with a continuous fall deposition of Hawaiian fire-fountains episodes alternated with Strombolian phases emplacing loose scoria deposits. High enrichment factor values, measured in the scoria deposits, imply the ejection of large proportion of ash even during Strombolian events.

New Ar/Ar single grain mineral ages from Korean orogenic belts with implications for the Triassic cooling and exhumation history

NASA Astrophysics Data System (ADS)

de Jong, Koenraad; Ruffet, Gilles; Han, Seokyoung

2013-04-01

The Korean peninsula is located in the eastern margin of the Eurasian continent where major late Palaeozoic to early Mesozoic continental collision zones, like the Central Asian Orogenic Belt and the Qinling-Dabie-Sulu Belt, merge with circum-Pacific subduction-accretion systems. Deciphering the tectonic evolution of Korea is thus crucial for the understanding of the amalgamation of East Asia. Classically, research in Korea has focused on the search for (ultra)high-pressure metamorphic rocks and their isotopic dating, most recently applying SHRIMP on Th- and U-bearing accessory minerals, in order to substantiate links with the Qinling-Dabie-Sulu Belt across the Yellow Sea in China. Instead of trying to date peak pressure conditions we focused on 40Ar/39Ar laser-probe step-heating dating of single grains of the fabric-forming minerals muscovite, biotite and amphibole, formed during retrograde recrystallisation and exhumation. This is a big advantage as their growth can be straightforwardly correlated to major phases of the tectono-metamorphic evolution of rocks. This approach helps to meet the major geochronological challenge of obtaining age estimates for the timing of specific tectono-metamorphic events in the Korean orogenic belts. The Korean peninsula comprises a number of Palaeoproterozoic high-grade gneiss terranes; only one of which has been affected by Permo-Triassic metamorphism: the Gyeonggi Massif. We concentrated on the uppermost Gyeonggi Massif and the overlying Imjingang Belt, to the North, and the ill-defined Hongseong zone to the West, both constituted by younger metamorphic rocks. Both belts contain rare lenses of mafic rocks with relics of high-pressure metamorphism. Hornblende from a corona-textured amphibolite from the lowermost part of the Imjingang Belt yielded a U-shaped age spectrum, the base of which is formed by four concordant steps with a weighted mean age of 242.8 ± 2.4 Ma (15% 39Ar release). Muscovites from strongly retrogressed and ductily deformed rocks in the mylonitised top of the Gyeonggi Massif yielded different 1? plateau ages: 242.8 ± 1.0 Ma and 240.3 ± 1.0 Ma for two chlorite-mica schists, and 219.7 ± 0.9 Ma for a garnet-bearing micaceous quartzite. Two amphibolites from Neoproterozoic orthogneiss in the Hongseong area yielded concordant 1? plateau ages of 228.1 ± 1.0 (biotite), 230.1 ± 1.0 (hornblende), and 229.8 ± 1.0 Ma (hornblende from a foliated garnet-bearing corona-textured amphibolite). 40Ar/39Ar laser-probe dating produced robust evidence that cooling and exhumation of once deeply buried rocks in different parts of Korea essentially occurred in middle to late Triassic time. The concordance of hornblende and mica ages in each of the target areas implies a rapid cooling, during at least part of the history, which seems not to have been coeval. This corroborates the observation that our Ar/Ar mineral ages are only a couple of million years younger than CHIME and SHRIMP U-Pb ages in accessory minerals, which are in the 230-255 Ma range in the uppermost Gyeonggi Massif and Imjingang Belt, and between 225-235 Ma in the Hongseong area. However, the much younger muscovite age from the mylonitic quartzite implies a prolonged recrystallization in the ductile shear zone in the uppermost Gyeonggi Massif. This is subject of ongoing research.

Features of Microwave Radiation and Magnetographic Characteristics of Solar Active Region NOAA 12242 Before the X1.8 Flare on December 20, 2014

NASA Astrophysics Data System (ADS)

Abramov-Maximov, V. E.; Borovik, V. N.; Opeikina, L. V.; Tlatov, A. G.; Yasnov, L. V.

2017-12-01

This paper continues the cycle of authors' works on the detection of precursors of large flares (M5 and higher classes) in active regions (ARs) of the Sun by their microwave radiation and magnetographic characteristics. Generalization of the detected precursors of strong flares can be used to develop methods for their prediction. This paper presents an analysis of the development of NOAA AR 12242, in which an X1.8 flare occurred on December 20, 2014. The analysis is based on regular multiazimuth and multiwavelength observations with the RATAN-600 radio telescope in the range 1.65-10 cm with intensity and circular polarization analysis and data from the Solar Dynamics Observatory (SDO). It was found that a new component appeared in the AR microwave radiation two days before the X-flare. It became dominant in the AR the day before the flare and significantly decreased after the flare. The use of multiazimuth observations from RATAN-600 and observations at 1.76 cm from the Nobeyama Radioheliograph made it possible to identify the radio source that appeared before the X-flare with the site of the closest convergence of opposite polarity fields near the neutral line in the AR. It was established that the X-flare occurred 20 h after the total gradient of the magnetic field of the entire region calculated from SDO/HMI data reached its maximum value. Analysis of the evolution of the microwave source that appeared before the X-flare in AR 12242 and comparison of its parameters with the parameters of other components of the AR microwave radiation showed that the new source can be classified as neutral line associated sources (NLSs), which were repeatedly detected by the RATAN-600 and other radio telescopes 1-3 days before the large flares.

40Ar/39Ar geochronology, paleomagnetism, and evolution of the Boring volcanic field, Oregon and Washington, USA

USGS Publications Warehouse

Fleck, Robert J.; Hagstrum, Jonathan T.; Calvert, Andrew T.; Evarts, Russell C.; Conrey, Richard M.

2014-01-01

The 40Ar/39Ar investigations of a large suite of fine-grained basaltic rocks of the Boring volcanic field (BVF), Oregon and Washington (USA), yielded two primary results. (1) Using age control from paleomagnetic polarity, stratigraphy, and available plateau ages, 40Ar/39Ar recoil model ages are defined that provide reliable age results in the absence of an age plateau, even in cases of significant Ar redistribution. (2) Grouping of eruptive ages either by period of activity or by composition defines a broadly northward progression of BVF volcanism during latest Pliocene and Pleistocene time that reflects rates consistent with regional plate movements. Based on the frequency distribution of measured ages, periods of greatest volcanic activity within the BVF occurred 2.7–2.2 Ma, 1.7–0.5 Ma, and 350–50 ka. Grouped by eruptive episode, geographic distributions of samples define a series of northeast-southwest–trending strips whose centers migrate from south-southeast to north-northwest at an average rate of 9.3 ± 1.6 mm/yr. Volcanic activity in the western part of the BVF migrated more rapidly than that to the east, causing trends of eruptive episodes to progress in an irregular, clockwise sense. The K2O and CaO values of dated samples exhibit well-defined temporal trends, decreasing and increasing, respectively, with age of eruption. Divided into two groups by K2O, the centers of these two distributions define a northward migration rate similar to that determined from eruptive age groups. This age and compositional migration rate of Boring volcanism is similar to the clockwise rotation rate of the Oregon Coast Range with respect to North America, and might reflect localized extension on the trailing edge of that rotating crustal block.

Geological evolution of Paniri volcano, Central Andes, northern Chile

NASA Astrophysics Data System (ADS)

Godoy, Benigno; Lazcano, José; Rodríguez, Inés; Martínez, Paula; Parada, Miguel Angel; Le Roux, Petrus; Wilke, Hans-Gerhard; Polanco, Edmundo

2018-07-01

Paniri volcano, in northern Chile, belongs to a volcanic chain trending across the main orientation of the Central Andean volcanic province. Field work mapping, stratigraphic sequences, and one new 40Ar/39Ar and eleven previous published 40Ar/39Ar, and K/Ar ages, indicate that the evolution of Paniri involved eruption of seven volcanic units (Malku, Los Gordos, Las Lenguas, Las Negras, Viscacha, Laguna, and Llareta) during four main stages occurring over more than 1 Myr: Plateau Shield (>800 ka); Main Edifice (800-400 ka); Old Cone (400-250 ka); and New Cone (250-100 ka). Considering glacial and fluvial action, an estimated 85.3 km3 of volcanic material were erupted during the eruptive history of Paniri volcano, giving a bulk eruption rate of 0.061 km3/ka, with major activity in the last 150 kyr (eruption rate of 0.101 km3/ka). Lava flows from Paniri show abundant plagioclase together with subordinate ortho-, and clino-pyroxene, and amphibole as main phenocrysts. Moreover, although true basalts are scarce in the Central Andes, olivine-bearing lavas were erupted at Paniri at ∼400 ka. Also, scarce phenocrysts of biotite, quartz, rutile, and opaque minerals (Fe-Ti oxides) were identified. The groundmass of these flows is composed mainly of glass along with pyroxene and plagioclase microlites. Consolidated and unconsolidated pyroclastic deposits of dacitic composition are also present. The consolidated deposits correspond to vitreous tuffs, whilst unconsolidated deposits are composed of pumice clasts up to 5 cm in diameter. Both pyroclastic deposits are composed of glassy groundmass (up to 80% vol.), and subordinated plagioclase, hornblende, and biotite phenocrysts up to 1 cm in length. Results of twenty-four new, coupled with previous published compositional analyses show that volcanic products of Paniri vary from 57% (basaltic-andesite) to 71% (rhyolite) vol. SiO2, with significant linear correlations between major element-oxide and trace-element concentrations. 87Sr/86Sr isotope ratios range from 0.7070 to 0.7075, indicating that Paniri, similar to other volcanoes of the San Pedro - Linzor volcanic chain, have undergone significant crustal contamination of its parental magmas. However, the almost constant Sr-isotope compositions of the different volcanic units defined for Paniri volcano, suggested later fractional crystallization of magmas at upper crustal levels.

Call for Development of New Mineral Standards for 40Ar/39Ar Dating

NASA Astrophysics Data System (ADS)

Deino, A. L.; Turrin, B. D.; Renne, P. R.; Hemming, S. R.

2015-12-01

Age determination via the 40Ar/39Ar dating method relies on the intercomparison of measured 40Ar*/39ArK ratios of geological unknowns with those of co-irradiated mineral standards. Good analytical procedure dictates that these ratios (and the evolution of the Ar ion beams underpinning them) be as similar as practical for the greatest accuracy. Unfortunately, throughout several intervals of the geological time scale this 'best practice' cannot be achieved with existing widely used standards. Only two internationally utilized sanidine standards are available for the middle to late Cenozoic: the Alder Creek Rhyolite sanidine (ACs), at ~1.2 Ma (Turrin et al., 1994; Nomade et al., 2005), and the Fish Canyon Tuff sanidine (FCs) at ~28.2 Ma (e.g., Kuiper et al., 2008; Renne et al, 2011). The situation is even worse throughout much of the rest of the Phanerozoic, as the next oldest standard in common use is the Hb3gr hornblende standard with an age of ~1.1 Ga (Turner, 1971; Jourdan et al., 2006). We propose, as a community effort, the development a set of standards covering the entire target range of high-precision 40Ar/39Ar dating, i.e. the Phanerozoic. Their ages would be stepped in a regular fashion with no more than approximately a factor of 3 between standards, such that in the worse case the 40Ar*/39Ar ratios of standards and unknown need differ by no more than a factor of two. While somewhat arbitrary, an approximately 3 X age progression allows the entire time scale to be covered by a manageable number of standards. Anchoring the progression in the widely used ACs, FCs, and Hb3gr (in bold, below) yields the following set of suggested standard ages: 0.4, 1.2, 3.3, 9.4, 28.2, 95, 320, and 1100 Ma. A suitable standard should be highly reproducible in age at the grain-to-grain and sub-grain levels, and highly radiogenic. The mineral should be abundant and easily separated from the host rock. These criteria may be most easily achieved by focusing on sanidine phenocrysts in unaltered volcanic deposits, though not exclusively so. Examples include the Zabriskie Wash Tuff of Death Valley at 3.3 Ma; several ~9-10 Ma volcanic units of the Bodie Hills and Snake River Plain, and the ~316 Ma Fireclay Tonstein of the central Appalachian basin. We welcome suggestions and discussions regarding other rock units that might be tapped for this endeavor.

Demonstration of Thermally Sprayed Metal and Polymer Coatings for Steel Structures at Fort Bragg, NC

DTIC Science & Technology

2017-09-01

for Steel Structures at Fort Bragg, NC Final Report on Project F07-AR10 Co ns tr uc tio n En gi ne er in g R es ea rc h La bo ra to ry Larry D...and Polymer Coatings for Steel Structures at Fort Bragg, NC Final Report on Project F07-AR10 Larry D. Stephenson, Alfred D. Beitelman, Richard G...recently been estimated that at least 25 U.S. Army in- stallations have severe corrosion problems with above-ground steel stor- age tanks. Coatings are

Data management and database structure at the ARS Culture Collection

USDA-ARS?s Scientific Manuscript database

The organization and management of collection data for the 96,000 strains held in the ARS Culture Collection has been an ongoing process. Originally, the records for the four separate collections were maintained by individual curators in notebooks and/or card files and subsequently on the National C...

Atmospheric River Development and Effects on Southern California

NASA Astrophysics Data System (ADS)

Harris, S. M.; Carvalho, L. V.

2014-12-01

Throughout most of southern California (SCA) annual precipitation totals occur from relatively few storms per season. Any changes to storm frequency or intensity may dramatically impact the region, as its landscapes are prone to various rainfall-induced hazards including landslides and floods. These hazards become more frequent following drought or fire events, conditions also reliant on precipitation and common in SCA. Rainfall forecasts are especially difficult to determine as regional precipitation is affected by numerous phenomena. On synoptic timescales, atmospheric rivers (ARs) are one such phenomenon known to impact SCA rainfall. ARs are channels of high water vapor content found within the lower atmosphere that transport moisture towards midlatitudes. In areas with varying topography, ARs often produce high-intensity precipitation due to orographic forcing. Although much insight has been gained in understanding AR climatology affecting North America's western coast, the spatiotemporal characteristics and atmospheric forcings driving ARs to SCA need to be further addressed. The goal of this work is to understand the characteristics of ARs that impact SCA and to distinguish them from ARs that impact northern latitudes. We investigate AR characteristics as well as atmospheric features prior to plume initiation for ARs impacting different landfall regions along North America's western coast between 1998-2008. Dates of AR events are organized according to landfall region using total precipitable water (TPW) fields from the National Oceanic and Atmospheric Administration's Climate Forecast System Reanalysis (CFSR). Additional CFSR fields are used to create anomaly composites of moist static energy, geopotential height, as well as upper-level zonal and low-level meridional winds for each landfall region on the day of and prior to AR occurrence. ARs that impact SCA display different TPW plume characteristics as well as wave train patterns throughout the AR lifecycle (prior to plume initiation-AR landfall) compared to ARs that landfall further north. This suggests that ARs impacting SCA differ in initiation mechanisms as well as structural qualities from other ARs. Information from these analyses will assist in creating and validating an automatic tool for identifying AR occurrences.

The Rhynie hot-spring system: implications for the Devonian timescale, development of Devonian biota, gold mineralization, evolution of the atmosphere and Earth outgassing

NASA Astrophysics Data System (ADS)

Mark, D.; Rice, C.; Stuart, F.; Trewin, N.

2011-12-01

The Rhynie cherts are hot spring sinters that contain world-renowned plant and animal remains and anomalously high quantities of heavy metals, including gold. The biota in several beds is preserved undeformed with plants in life positions thus establishing that they and the indurating hydrothermal fluids were coeval. Despite the international importance of the Rhynie cherts their age has been poorly constrained for three reasons: (1) lack of a precise radio-isotopic age, (2) low resolution of spore biostratigraphic schemes for Devonian terrestrial deposits, with only one to a few zones per stage, and (3) poor resolution of the early Devonian timescale. Wellman (2004) assigned a Pragian-?earliest Emsian age to the Rhynie cherts on the basis of the spore assemblage. An 40Ar/39Ar dating study targeting Rhynie chert yielded an age of 395 ± 12 Ma (1σ) (Rice et al., 1995). This contribution discusses a new high-precision 40Ar/39Ar age (407.1 ± 2.2 Ma, 2σ) for the Devonian hot-spring system at Rhynie (Mark et al., 2011) and demonstrates that a proposed U-Pb age (411.5 ± 1.1 Ma, 2σ) for the Rhynie cherts (Parry et al., 2011) is inconsistent with both field evidence and our interpretation of the U-Pb data. The 40Ar/39Ar age provides a robust marker for the polygonalis-emsiensis Spore Assemblage Biozone within the Pragian-?earliest Emsian. It also constrains the age of a wealth of flora and fauna preserved in life positions as well as dating gold mineralization. Furthermore, we have now determined the Ar isotope composition of pristine samples of the Rhynie chert using an ARGUS multi-collector mass spectrometer and a low blank laser extraction technique. 40Ar/36Ar are systematically lower than the modern air value (Lee et al., 2006), and are not accompanied by non-atmospheric 38Ar/36Ar ratios. We conclude that the Rhynie chert captured and has preserved Devonian atmosphere-derived Ar. The data indicate that the 40Ar/36Ar of Devonian atmosphere was at least 3 % lower than the modern air value (Lee et al., 2006). Thus the Earth's atmosphere has accumulated at least 5 ± 0.2 x 1016 moles of 40Ar in the last c. 407 Ma, at an average rate of 1.24 ± 0.06 x 108 mol 40Ar/year. This overlaps the 40Ar accumulation rate determined from ice cores for the last 800,000 years (Bender et al. 2008) and implies that there has been no resolvable temporal change in outgassing rate since the mid-Palaeozoic. The new chronological and Ar isotope data provide a unique tie point and dictate outgassing of the Earth's interior early in Earth history. [1] Bender, M. et al. (2008) Proceedings of the National Academy of Sciences, 105, 8232-8237. [2] Wellman, C.H., 2004. Proceedings of the Royal Society of London. Biological Sciences, 271, 985-992. [3] Lee, J.Y. et al. (2006) Geochimica et Cosmochimica Acta, 70, 4507-4512. [4] Mark, D.F. et al. (2011) Geochimica et Cosmochimica Acta, 75, 555-569. [5] Parry, S.F. et al. (2011) Journal of the Geological Society, London, 168, 863-872. [6] Rice, C.M. et al. (1995) Journal of the Geological Society, London, 152, 229-2250.

Functional characterization of a second pedal peptide/orcokinin‐type neuropeptide signaling system in the starfish Asterias rubens

PubMed Central

Lin, Ming; Egertová, Michaela; Zampronio, Cleidiane G.; Jones, Alexandra M.

2017-01-01

Abstract Molluscan pedal peptides (PPs) and arthropod orcokinins (OKs) are prototypes of a family of neuropeptides that have been identified in several phyla. Recently, starfish myorelaxant peptide (SMP) was identified as a PP/OK‐type neuropeptide in the starfish Patiria pectinifera (phylum Echinodermata). Furthermore, analysis of transcriptome sequence data from the starfish Asterias rubens revealed two PP/OK‐type precursors: an SMP‐type precursor (A. rubens PP‐like neuropeptide precursor 1; ArPPLNP1) and a second precursor (ArPPLNP2). We reported previously a detailed analysis of ArPPLNP1 expression in A. rubens and here we report the first functional characterization ArPPLNP2‐derived neuropeptides. Sequencing of a cDNA encoding ArPPLNP2 revealed that it comprises eleven related neuropeptides (ArPPLN2a‐k), the structures of several of which were confirmed using mass spectrometry. Analysis of the expression of ArPPLNP2 and neuropeptides derived from this precursor using mRNA in situ hybridization and immunohistochemistry revealed a widespread distribution, including expression in radial nerve cords, circumoral nerve ring, digestive system, tube feet and innervation of interossicular muscles. In vitro pharmacology revealed that the ArPPLNP2‐derived neuropeptide ArPPLN2h has no effect on the contractility of tube feet or the body wall‐associated apical muscle, contrasting with the relaxing effect of ArPPLN1b (ArSMP) on these preparations. ArPPLN2h does, however, cause dose‐dependent relaxation of cardiac stomach preparations, with greater potency/efficacy than ArPPLN1b and with similar potency/efficacy to the SALMFamide neuropeptide S2. In conclusion, there are similarities in the expression patterns of ArPPLNP1 and ArPPLNP2 but our data also indicate specialization in the roles of neuropeptides derived from these two PP/OK‐type precursors in starfish. PMID:29218721

Functional characterization of a second pedal peptide/orcokinin-type neuropeptide signaling system in the starfish Asterias rubens.

PubMed

Lin, Ming; Egertová, Michaela; Zampronio, Cleidiane G; Jones, Alexandra M; Elphick, Maurice R

2018-04-01

Molluscan pedal peptides (PPs) and arthropod orcokinins (OKs) are prototypes of a family of neuropeptides that have been identified in several phyla. Recently, starfish myorelaxant peptide (SMP) was identified as a PP/OK-type neuropeptide in the starfish Patiria pectinifera (phylum Echinodermata). Furthermore, analysis of transcriptome sequence data from the starfish Asterias rubens revealed two PP/OK-type precursors: an SMP-type precursor (A. rubens PP-like neuropeptide precursor 1; ArPPLNP1) and a second precursor (ArPPLNP2). We reported previously a detailed analysis of ArPPLNP1 expression in A. rubens and here we report the first functional characterization ArPPLNP2-derived neuropeptides. Sequencing of a cDNA encoding ArPPLNP2 revealed that it comprises eleven related neuropeptides (ArPPLN2a-k), the structures of several of which were confirmed using mass spectrometry. Analysis of the expression of ArPPLNP2 and neuropeptides derived from this precursor using mRNA in situ hybridization and immunohistochemistry revealed a widespread distribution, including expression in radial nerve cords, circumoral nerve ring, digestive system, tube feet and innervation of interossicular muscles. In vitro pharmacology revealed that the ArPPLNP2-derived neuropeptide ArPPLN2h has no effect on the contractility of tube feet or the body wall-associated apical muscle, contrasting with the relaxing effect of ArPPLN1b (ArSMP) on these preparations. ArPPLN2h does, however, cause dose-dependent relaxation of cardiac stomach preparations, with greater potency/efficacy than ArPPLN1b and with similar potency/efficacy to the SALMFamide neuropeptide S2. In conclusion, there are similarities in the expression patterns of ArPPLNP1 and ArPPLNP2 but our data also indicate specialization in the roles of neuropeptides derived from these two PP/OK-type precursors in starfish. © 2017 The Authors The Journal of Comparative Neurology Published by Wiley Periodicals, Inc.

ARBOOK: Development and Assessment of a Tool Based on Augmented Reality for Anatomy

ERIC Educational Resources Information Center

Ferrer-Torregrosa, J.; Torralba, J.; Jimenez, M. A.; García, S.; Barcia, J. M.

2015-01-01

The evolution of technologies and the development of new tools with educational purposes are growing up. This work presents the experience of a new tool based on augmented reality (AR) focusing on the anatomy of the lower limb. ARBOOK was constructed and developed based on TC and MRN images, dissections and drawings. For ARBOOK evaluation, a…

The inheritance of a Mesozoic landscape in western Scandinavia

PubMed Central

Fredin, Ola; Viola, Giulio; Zwingmann, Horst; Sørlie, Ronald; Brönner, Marco; Lie, Jan-Erik; Grandal, Else Margrethe; Müller, Axel; Margreth, Annina; Vogt, Christoph; Knies, Jochen

2017-01-01

In-situ weathered bedrock, saprolite, is locally found in Scandinavia, where it is commonly thought to represent pre-Pleistocene weathering possibly associated with landscape formation. The age of weathering, however, remains loosely constrained, which has an impact on existing geological and landscape evolution models and morphotectonic correlations. Here we provide new geochronological evidence that some of the low-altitude basement landforms on- and offshore southwestern Scandinavia are a rejuvenated geomorphological relic from Mesozoic times. K-Ar dating of authigenic, syn-weathering illite from saprolitic remnants constrains original basement exposure in the Late Triassic (221.3±7.0–206.2±4.2 Ma) through deep weathering in a warm climate and subsequent partial mobilization of the saprolitic mantle into the overlying sediment cascade system. The data support the bulk geomorphological development of west Scandinavia coastal basement rocks during the Mesozoic and later, long-lasting relative tectonic stability. Pleistocene glaciations played an additional geomorphological role, selectively stripping the landscape from the Mesozoic overburden and carving glacial landforms down to Plio–Pleistocene times. Saprolite K-Ar dating offers unprecedented possibilities to study past weathering and landscape evolution processes. PMID:28452366

Conformational Flexibility of a Short Loop near the Active Site of the SARS-3CLpro is Essential to Maintain Catalytic Activity

NASA Astrophysics Data System (ADS)

Li, Chunmei; Teng, Xin; Qi, Yifei; Tang, Bo; Shi, Hailing; Ma, Xiaomin; Lai, Luhua

2016-02-01

The SARS 3C-like proteinase (SARS-3CLpro), which is the main proteinase of the SARS coronavirus, is essential to the virus life cycle. This enzyme has been shown to be active as a dimer in which only one protomer is active. However, it remains unknown how the dimer structure maintains an active monomer conformation. It has been observed that the Ser139-Leu141 loop forms a short 310-helix that disrupts the catalytic machinery in the inactive monomer structure. We have tried to disrupt this helical conformation by mutating L141 to T in the stable inactive monomer G11A/R298A/Q299A. The resulting tetra-mutant G11A/L141T/R298A/Q299A is indeed enzymatically active as a monomer. Molecular dynamics simulations revealed that the L141T mutation disrupts the 310-helix and helps to stabilize the active conformation. The coil-310-helix conformational transition of the Ser139-Leu141 loop serves as an enzyme activity switch. Our study therefore indicates that the dimer structure can stabilize the active conformation but is not a required structure in the evolution of the active enzyme, which can also arise through simple mutations.

Critical role of androgen receptor in the postnatal period in male sexual behavior in rats.

PubMed

Yamada, Shunji; Ohoya, Miku; Takanami, Keiko; Matsuda, Ken Ichi; Kawata, Mitsuhiro

2015-11-16

Gonadal hormones have a developmental role in organization of the nervous system that regulates sexually dimorphic behavior. It is well known that androgen secreted from testes in the perinatal period is converted to estrogen by aromatase in rodent brain, and that estrogen and its receptor play a pivotal role in masculinization of brain structure and function. Treatment with flutamide, an androgen receptor (AR) antagonist, during the perinatal period inhibits development of malespecific brain structure and function, suggesting that androgen signaling via AR also influences brain masculinization. In this study, we investigated which stage during the postnatal period is critical for androgen signaling in brain masculinization. The postnatal period was designated as postnatal days (PD) 0-22, and divided into stages I (PD 0-7), II (PD 8-14), and III (PD 15-22). Newborn male rats were given flutamide subcutaneously in each stage. After adulthood, the effects of postnatal flutamide treatment on brain masculinization were evaluated byanalysis of male sexual behavior. Continuous inhibition of AR throughout stages I and II caused a robust reduction of the intromission ratio and ejaculation frequency compared with other groups. AR inhibition in stage I, II, or III did not cause any change. AR inhibition had no effect onmount behavior. These results show that stage-specific AR activation in the first two postnatal weeks may contribute to brain masculinization mediating male sexual behavior in adulthood. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Second Generation Organometallic Materials for Non-Linear Optical Application

DTIC Science & Technology

2009-05-26

University of Florida I . Project Objectives, Significance and Overview During the past several years in an AFOSR sponsored project our group has...Ar i PR3 rr\\3 PR 3 Pt—=— Ar- PRs n Pt-acetylide oligomer Pt-acetylide polymer Figure 1. Structure of platinum-acetylide materials. Work...Solvent - CH,C1 Energyu»» i /J Figure 9. Top: Structures of TPA-M complexes. Bottom: Nonlinear transmission for 10 and 20 mM, CH2C12 solutions of

Evolution of the northern Main Ethiopian rift: birth of a triple junction

NASA Astrophysics Data System (ADS)

Wolfenden, Ellen; Ebinger, Cynthia; Yirgu, Gezahegn; Deino, Alan; Ayalew, Dereje

2004-07-01

Models for the formation of the archetypal rift-rift-rift triple junction in the Afar depression have assumed the synchronous development of the Red Sea-Aden-East African rift systems soon after flood basaltic magmatism at 31 Ma, but the timing of intial rifting in the northern sector of the East African rift system had been poorly constrained. The aims of our field, geochronology, and remote sensing studies were to determine the timing and kinematics of rifting in the 3rd arm, the Main Ethiopian rift (MER), near its intersection with the southern Red Sea rift. New structural data and 10 new SCLF 40Ar/39Ar dates show that extension in the northern Main Ethiopian rift commenced after 11 Ma, more than 17 My after initial rifting in the southern Red Sea and Gulf of Aden. The triple junction, therefore, could have developed only during the past 11 My, or 20 My after the flood basaltic magmatism. Thus, the flood basaltic magmatism and separation of Arabia from Africa are widely separated in time from the opening of the Main Ethiopian rift, which marks the incipient Nubia-Somalia plate boundary; triple junction formation is not a primary feature of breakup above the Afar mantle plume. The East African rift system appears to have propagated northward from the Mesozoic Anza rift system into the Afar depression to cut across Oligo-Miocene rift structures of the Red Sea and Gulf of Aden, in response to global plate reorganisations. Structural patterns reveal a change from 130°E-directed extension to 105°E-directed extension sometime in the interval 6.6 to 3 Ma, consistent with predictions from global plate kinematic studies. The along-axis propagation of rifting in each of the three arms of the triple junction has led to a NE-migration of the triple junction since 11 Ma.

Geologic and Geophysical Framework of the Santa Rosa 7.5' Quadrangle, Sonoma County, California

USGS Publications Warehouse

McLaughlin, R.J.; Langenheim, V.E.; Sarna-Wojcicki, A. M.; Fleck, R.J.; McPhee, D.K.; Roberts, C.W.; McCabe, C.A.; Wan, Elmira

2008-01-01

The geologic and geophysical maps of Santa Rosa 7.5? quadrangle and accompanying structure sections portray the sedimentary and volcanic stratigraphy and crustal structure of the Santa Rosa 7.5? quadrangle and provide a context for interpreting the evolution of volcanism and active faulting in this region. The quadrangle is located in the California Coast Ranges north of San Francisco Bay and is traversed by the active Rodgers Creek, Healdsburg and Maacama Fault Zones. The geologic and geophysical data presented in this report, are substantial improvements over previous geologic and geophysical maps of the Santa Rosa area, allowing us to address important geologic issues. First, the geologic mapping is integrated with gravity and magnetic data, allowing us to depict the thicknesses of Cenozoic deposits, the depth and configuration of the Mesozoic basement surface, and the geometry of fault structures beneath this region to depths of several kilometers. This information has important implications for constraining the geometries of major active faults and for understanding and predicting the distribution and intensity of damage from ground shaking during earthquakes. Secondly, the geologic map and the accompanying description of the area describe in detail the distribution, geometry and complexity of faulting associated with the Rodgers Creek, Healdsburg and Bennett Valley Fault Zones and associated faults in the Santa Rosa quadrangle. The timing of fault movements is constrained by new 40Ar/39Ar ages and tephrochronologic correlations. These new data provide a better understanding of the stratigraphy of the extensive sedimentary and volcanic cover in the area and, in particular, clarify the formational affinities of Pliocene and Pleistocene nonmarine sedimentary units in the map area. Thirdly, the geophysics, particularly gravity data, indicate the locations of thick sections of sedimentary and volcanic fill within ground water basins of the Santa Rosa plain and Rincon, Bennett, and northwestern Sonoma Valleys, providing geohydrologists a more realistic framework for groundwater flow models.

THE UBIQUITOUS PRESENCE OF LOOPLIKE FINE STRUCTURE INSIDE SOLAR ACTIVE REGIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Y.-M., E-mail: yi.wang@nrl.navy.mil

Although most of the solar surface outside active regions (ARs) is pervaded by small-scale fields of mixed polarity, this magnetic “carpet” or “junkyard” is thought to be largely absent inside AR plages and strong network. However, using extreme-ultraviolet images and line-of-sight magnetograms from the Solar Dynamics Observatory, we find that unipolar flux concentrations, both inside and outside ARs, often have small, loop-shaped Fe ix 17.1 and Fe xii 19.3 nm features embedded within them, even though no minority-polarity flux is visible in the corresponding magnetograms. Such looplike structures, characterized by horizontal sizes of ∼3–5 Mm and varying on timescales ofmore » minutes or less, are seen inside bright 17.1 nm moss, as well as in fainter moss-like regions associated with weaker network outside ARs. We also note a tendency for bright coronal loops to show compact, looplike features at their footpoints. Based on these observations, we suggest that present-day magnetograms may be substantially underrepresenting the amount of minority-polarity flux inside plages and strong network, and that reconnection between small bipoles and the overlying large-scale field could be a major source of coronal heating both in ARs and in the quiet Sun.« less

Simultaneous determination of ascorbic acid, dopamine and uric acid by a novel electrochemical sensor based on N2/Ar RF plasma assisted graphene nanosheets/graphene nanoribbons.

PubMed

Jothi, Lavanya; Neogi, Sudarsan; Jaganathan, Saravana Kumar; Nageswaran, Gomathi

2018-05-15

A novel nitrogen/argon (N 2 /Ar) radio frequency (RF) plasma functionalized graphene nanosheet/graphene nanoribbon (GS/GNR) hybrid material (N 2 /Ar/GS/GNR) was developed for simultaneous determination of ascorbic acid (AA), dopamine (DA) and uric acid (UA). Various nitrogen mites introduced into GS/GNR hybrid structure was evidenced by a detailed microscopic, spectroscopic and surface area analysis. Owing to the unique structure and properties originating from the enhanced surface area, nitrogen functional groups and defects introduced on both the basal and edges, N 2 /Ar/GS/GNR/GCE showed high electrocatalytic activity for the electrochemical oxidations of AA, DA, and UA with the respective lowest detection limits of 5.3, 2.5 and 5.7 nM and peak-to-peak separation potential (ΔE P ) (vs Ag/AgCl) in DPV of 220, 152 and 372 mV for AA/DA, DA/UA and AA/UA respectively. Moreover, the selectivity, stability, repeatability and excellent performance in real time application of the fabricated N 2 /Ar/GS/GNR/GCE electrode suggests that it can be considered as a potential electrode material for simultaneous detection of AA, DA, and UA. Copyright © 2018 Elsevier B.V. All rights reserved.

Crystal Structures of the β2-Adrenergic Receptor

NASA Astrophysics Data System (ADS)

Weis, William I.; Rosenbaum, Daniel M.; Rasmussen, Søren G. F.; Choi, Hee-Jung; Thian, Foon Sun; Kobilka, Tong Sun; Yao, Xiao-Jie; Day, Peter W.; Parnot, Charles; Fung, Juan J.; Ratnala, Venkata R. P.; Kobilka, Brian K.; Cherezov, Vadim; Hanson, Michael A.; Kuhn, Peter; Stevens, Raymond C.; Edwards, Patricia C.; Schertler, Gebhard F. X.; Burghammer, Manfred; Sanishvili, Ruslan; Fischetti, Robert F.; Masood, Asna; Rohrer, Daniel K.

G protein coupled receptors (GPCRs) constitute the largest family of membrane proteins in the human genome, and are responsible for the majority of signal transduction events involving hormones and neuro-transmitters across the cell membrane. GPCRs that bind to diffusible ligands have low natural abundance, are relatively unstable in detergents, and display basal G protein activation even in the absence of ligands. To overcome these problems two approaches were taken to obtain crystal structures of the β2-adrenergic receptor (β2AR), a well-characterized GPCR that binds cate-cholamine hormones. The receptor was bound to the partial inverse agonist carazolol and co-crystallized with a Fab made to a three-dimensional epitope formed by the third intracellular loop (ICL3), or by replacement of ICL3 with T4 lysozyme. Small crystals were obtained in lipid bicelles (β2AR-Fab) or lipidic cubic phase (β2AR-T4 lysozyme), and diffraction data were obtained using microfocus technology. The structures provide insights into the basal activity of the receptor, the structural features that enable binding of diffusible ligands, and the coupling between ligand binding and G-protein activation.

Detection of anabolic androgenic steroid abuse in doping control using mammalian reporter gene bioassays.

PubMed

Houtman, Corine J; Sterk, Saskia S; van de Heijning, Monique P M; Brouwer, Abraham; Stephany, Rainer W; van der Burg, Bart; Sonneveld, Edwin

2009-04-01

Anabolic androgenic steroids (AAS) are a class of steroid hormones related to the male hormone testosterone. They are frequently detected as drugs in sport doping control. Being similar to or derived from natural male hormones, AAS share the activation of the androgen receptor (AR) as common mechanism of action. The mammalian androgen responsive reporter gene assay (AR CALUX bioassay), measuring compounds interacting with the AR can be used for the analysis of AAS without the necessity of knowing their chemical structure beforehand, whereas current chemical-analytical approaches may have difficulty in detecting compounds with unknown structures, such as designer steroids. This study demonstrated that AAS prohibited in sports and potential designer AAS can be detected with this AR reporter gene assay, but that also additional steroid activities of AAS could be found using additional mammalian bioassays for other types of steroid hormones. Mixtures of AAS were found to behave additively in the AR reporter gene assay showing that it is possible to use this method for complex mixtures as are found in doping control samples, including mixtures that are a result of multi drug use. To test if mammalian reporter gene assays could be used for the detection of AAS in urine samples, background steroidal activities were measured. AAS-spiked urine samples, mimicking doping positive samples, showed significantly higher androgenic activities than unspiked samples. GC-MS analysis of endogenous androgens and AR reporter gene assay analysis of urine samples showed how a combined chemical-analytical and bioassay approach can be used to identify samples containing AAS. The results indicate that the AR reporter gene assay, in addition to chemical-analytical methods, can be a valuable tool for the analysis of AAS for doping control purposes.

Towards cybernetic surgery: robotic and augmented reality-assisted liver segmentectomy.

PubMed

Pessaux, Patrick; Diana, Michele; Soler, Luc; Piardi, Tullio; Mutter, Didier; Marescaux, Jacques

2015-04-01

Augmented reality (AR) in surgery consists in the fusion of synthetic computer-generated images (3D virtual model) obtained from medical imaging preoperative workup and real-time patient images in order to visualize unapparent anatomical details. The 3D model could be used for a preoperative planning of the procedure. The potential of AR navigation as a tool to improve safety of the surgical dissection is outlined for robotic hepatectomy. Three patients underwent a fully robotic and AR-assisted hepatic segmentectomy. The 3D virtual anatomical model was obtained using a thoracoabdominal CT scan with a customary software (VR-RENDER®, IRCAD). The model was then processed using a VR-RENDER® plug-in application, the Virtual Surgical Planning (VSP®, IRCAD), to delineate surgical resection planes including the elective ligature of vascular structures. Deformations associated with pneumoperitoneum were also simulated. The virtual model was superimposed to the operative field. A computer scientist manually registered virtual and real images using a video mixer (MX 70; Panasonic, Secaucus, NJ) in real time. Two totally robotic AR segmentectomy V and one segmentectomy VI were performed. AR allowed for the precise and safe recognition of all major vascular structures during the procedure. Total time required to obtain AR was 8 min (range 6-10 min). Each registration (alignment of the vascular anatomy) required a few seconds. Hepatic pedicle clamping was never performed. At the end of the procedure, the remnant liver was correctly vascularized. Resection margins were negative in all cases. The postoperative period was uneventful without perioperative transfusion. AR is a valuable navigation tool which may enhance the ability to achieve safe surgical resection during robotic hepatectomy.

BACKWARD ANGLE STRUCTURE IN THE 20Ne+28Si QUASIELASTIC SCATTERING

NASA Astrophysics Data System (ADS)

Sgouros, O.; Soukeras, V.; Pakou, A.; Patronis, N.; Zerva, K.; Keeley, N.; Strojek, I.; Trzcińska, A.; Piasecki, E.; Rusek, K.; Stiliaris, E.; Mazzocco, M.

2013-10-01

New data for the quasielastic scattering of 20Ne from a 28Si target at incident energies of 42.5 MeV and 52.3 MeV and for the 28Si(20Ne, 24Mg)24Mg, 28Si(20Ne, 16O)32S and 28Si(20Ne, 12C)36Ar transfer reactions at 52.3 MeV are reported. Oscillations are observed in the backward angle quasielastic scattering data at 52.3 MeV and the 28Si(20Ne, 12C)36Ar transfer cross-sections are of the same magnitude as those for single-α stripping. Coupled reaction channels (CRC) calculations are unable to describe either the quasielastic or the 28Si(20Ne, 12C)36Ar transfer data assuming a sequential α transfer process with α-particle form factors from the literature. The addition of direct 8Be cluster transfer can provide a reasonable description of both data sets, but only with much larger spectroscopic factors than suggested by simple structure calculations or the large 8Be emission thresholds of 20Ne, 28Si and 36Ar, suggesting that the observed structure is of resonance-like origin. An optical model analysis of the quasielastic scattering data is also reported.

The 40Ar/39Ar and K/Ar dating of lavas from the Hilo 1-km core hole, Hawaii Scientific Drilling Project

USGS Publications Warehouse

Sharp, W.D.; Turrin, B.D.; Renne, P.R.; Lanphere, M.A.

1996-01-01

Mauna Kea lava flows cored in the HilIo hole range in age from <200 ka to about 400 ka based on 40Ar/39Ar incremental heating and K-Ar analyses of 16 groundmass samples and one coexisting plagioclase. The lavas, all subaerially deposited, include a lower section consisting only of tholeiitic basalts and an upper section of interbedded alkalic, transitional tholeiitic, and tholeiitic basalts. The lower section has yielded predominantly complex, discordant 40Ar/39Ar age spectra that result from mobility of 40Ar and perhaps K, the presence of excess 40Ar, and redistribution of 39Ar by recoil. Comparison of K-Ar ages with 40Ar/39Ar integrated ages indicates that some of these samples have also lost 39Ar. Nevertheless, two plateau ages of 391 ?? 40 and 400 ?? 26 ka from deep in the hole, combined with data from the upper section, show that the tholeiitic section accumulated at an average rate of about 7 to 8 m/kyr and has an mean recurrence interval of 0.5 kyr/flow unit. Samples from the upper section yield relatively precise 40Ar/39Ar plateau and isotope correlation ages of 326 ?? 23, 241 ?? 5, 232 ?? 4, and 199 ?? 9 ka for depths of -415.7 m to -299.2 m. Within their uncertainty, these ages define a linear relationship with depth, with an average accumulation rate of 0.9 m/kyr and an average recurrence interval of 4.8 kyr/flow unit. The top of the Mauna Kea sequence at -280 m must be older than the plateau age of 132 ?? 32 ka, obtained for the basal Mauna Loa flow in the corehole. The upward decrease in lava accumulation rate is a consequence of the decreasing magma supply available to Mauna Kea as it rode the Pacific plate away from its magma source, the Hawaiian mantle plume. The age-depth relation in the core hole may be used to test and refine models that relate the growth of Mauna Kea to the thermal and compositional structure of the mantle plume.

A high-precision 40Ar/39Ar age for the Nördlinger Ries impact crater, Germany, and implications for the accurate dating of terrestrial impact events

NASA Astrophysics Data System (ADS)

Schmieder, Martin; Kennedy, Trudi; Jourdan, Fred; Buchner, Elmar; Reimold, Wolf Uwe

2018-01-01

40Ar/39Ar dating of specimens of moldavite, the formation of which is linked to the Ries impact in southern Germany, with a latest-generation ARGUS VI multi-collector mass spectrometer yielded three fully concordant plateau ages with a weighted mean age of 14.808 ± 0.021 Ma (± 0.038 Ma including all external uncertainties; 2σ; MSWD = 0.40, P = 0.67). This new best-estimate age for the Nördlinger Ries is in general agreement with previous 40Ar/39Ar results for moldavites, but constitutes a significantly improved precision with respect to the formation age of the distal Ries-produced tektites. Separates of impact glass from proximal Ries ejecta (suevite glass from three different surface outcrops) and partially melted feldspar particles from impact melt rock of the SUBO 18 Enkingen drill core failed to produce meaningful ages. These glasses show evidence for excess 40Ar introduction, which may have been incurred during interaction with hydrothermal fluids. Only partially reset 40Ar/39Ar ages could be determined for the feldspathic melt separates from the Enkingen core. The new 40Ar/39Ar results for the Ries impact structure constrain the duration of crater cooling, during the prevailing hydrothermal activity, to locally at least ∼60 kyr. With respect to the dating of terrestrial impact events, this paper briefly discusses a number of potential issues and effects that may be the cause for seemingly precise, but on a kyr-scale inaccurate, impact ages.

Recent progress in the development of protein-protein interaction inhibitors targeting androgen receptor-coactivator binding in prostate cancer.

PubMed

Biron, Eric; Bédard, François

2016-07-01

The androgen receptor (AR) is a key regulator for the growth, differentiation and survival of prostate cancer cells. Identified as a primary target for the treatment of prostate cancer, many therapeutic strategies have been developed to attenuate AR signaling in prostate cancer cells. While frontline androgen-deprivation therapies targeting either the production or action of androgens usually yield favorable responses in prostate cancer patients, a significant number acquire treatment resistance. Known as the castration-resistant prostate cancer (CRPC), the treatment options are limited for this advanced stage. It has been shown that AR signaling is restored in CRPC due to many aberrant mechanisms such as AR mutations, amplification or expression of constitutively active splice-variants. Coregulator recruitment is a crucial regulatory step in AR signaling and the direct blockade of coactivator binding to AR offers the opportunity to develop therapeutic agents that would remain effective in prostate cancer cells resistant to conventional endocrine therapies. Structural analyses of the AR have identified key surfaces involved in protein-protein interaction with coregulators that have been recently used to design and develop promising AR-coactivator binding inhibitors. In this review we will discuss the design and development of small-molecule inhibitors targeting the AR-coactivator interactions for the treatment of prostate cancer. Copyright © 2015 Elsevier Ltd. All rights reserved.

Photosynthetic activity buffers ocean acidification in seagrass meadows

NASA Astrophysics Data System (ADS)

Hendriks, I. E.; Olsen, Y. S.; Ramajo, L.; Basso, L.; Steckbauer, A.; Moore, T. S.; Howard, J.; Duarte, C. M.

2013-07-01

Macrophytes growing in shallow coastal zones characterized by intense metabolic activity have the capacity to modify pH within their canopy and beyond. We observed diel pH ranges is in shallow (5-12 m) seagrass (Posidonia oceanica) meadows from 0.06 pH units in September to 0.24 units in June. The carbonate system (pH, DIC, and aragonite saturation state (ΩAr) and O2 within the meadows displayed strong diel variability driven by primary productivity, and changes in chemistry were related to structural parameters of the meadow, in particular, the leaf surface area available for photosynthesis (LAI). LAI was positively correlated to mean and max pHNBS and max ΩAr. Oxygen production positively influenced the range and maximum pHNBS and the range of ΩAr. In June, vertical mixing (as Turbulent Kinetic Energy) influenced ΩAr, while in September there was no effect of hydrodynamics on the carbonate system within the canopy. ΩAr was positively correlated with the calcium carbonate load of the leaves, demonstrating a direct link between structural parameters, ΩAr and carbonate deposition. There was a direct relationship between ΩAr, influenced directly by meadow LAI, and CaCO3 content of the leaves. Therefore, calcifying organisms, e.g. epiphytes with carbonate skeletons, might benefit from the modification of the carbonate system by the meadow. The meadow might be capable of providing refugia for calcifiers by increasing pH and ΩAr through metabolic activity. There is, however, concern for the ability of seagrasses to provide this refugia function in the future. The predicted decline of seagrass meadows may alter the scope for alteration of pH within a seagrass meadow and in the water column above the meadow, particularly if shoot density and biomass decline, both strongly linked to LAI. Organisms associated with seagrass communities may therefore suffer from the loss of pH buffering capacity in degraded meadows.

Bilastine: new insight into antihistamine treatment.

PubMed

Ridolo, Erminia; Montagni, Marcello; Bonzano, Laura; Incorvaia, Cristoforo; Canonica, Giorgio Walter

2015-01-01

Bilastine is a new second generation H1-antihistamine recently approved for the symptomatic treatment of allergic rhinitis (AR) and chronic urticaria (CU). Bilastine epitomizes the evolution of research on antihistamines concerning both efficacy and safety. In AR treatment, a number of large controlled clinical trials documented its efficacy, as assessed by improvement of all nasal and ocular symptoms and quality of life. These outcomes show that bilastine meets current EAACI/ARIA criteria for medications used in the treatment of AR. Also in CU, the review of the literature indicates that once-daily treatment with bilastine 20 mg was effective in managing symptoms and improving patient's quality of life. Concerning safety and tolerability, the profile of bilastine is very similar to placebo and in particular the adverse effects on central nervous system are insignificant. The balance of efficacy and safety of bilastine is particularly helpful when dosages higher than standard are needed to control the symptoms, as frequently occurs in patients with urticaria, in whom antihistamines doses up to four times the standard dose may be administered.

Safety of clinical and non-clinical decision makers in telephone triage: a narrative review.

PubMed

Wheeler, Sheila Q; Greenberg, Mary E; Mahlmeister, Laura; Wolfe, Nicole

2015-09-01

Patient safety is a persistent problem in telephone triage research; however, studies have not differentiated between clinicians' and non-clinicians' respective safety. Currently, four groups of decision makers perform aspects of telephone triage: clinicians (physicians, nurses), and non-clinicians (emergency medical dispatchers (EMD) and clerical staff). Using studies published between 2002-2012, we applied Donabedian's structure-process-outcome model to examine groups' systems for evidence of system completeness (a minimum measure of structure and quality). We defined system completeness as the presence of a decision maker and four additional components: guidelines, documentation, training, and standards. Defining safety as appropriate referrals (AR) - (right time, right place with the right person), we measured each groups' corresponding AR rate percentages (outcomes). We analyzed each group's respective decision-making process as a safe match to the telephone triage task, based on each group's system structure completeness, process and AR rates (outcome). Studies uniformly noted system component presence: nurses (2-4), physicians (1), EMDs (2), clerical staff (1). Nurses had the highest average appropriate referral (AR) rates (91%), physicians' AR (82% average). Clerical staff had no system and did not perform telephone triage by standard definitions; EMDs may represent the use of the wrong system. Telephone triage appears least safe after hours when decision makers with the least complete systems (physicians, clerical staff) typically manage calls. At minimum, telephone triage decision makers should be clinicians; however, clinicians' safety calls for improvement. With improved training, standards and CDSS quality, the 24/7 clinical call center has potential to represent the national standard. © The Author(s) 2015.

Identification of detergent-resistant plasma membrane microdomains in dictyostelium: enrichment of signal transduction proteins.

PubMed Central

Xiao, Z; Devreotes, P N

1997-01-01

Unlike most other cellular proteins, the chemoattractant receptor, cAR1, of Dictyostelium is resistant to extraction by the zwitterionic detergent, CHAPS. We exploited this property to isolate a subcellular fraction highly enriched in cAR1 by flotation of CHAPS lysates of cells in sucrose density gradients. Immunogold electron microscopy studies revealed a homogeneous preparation of membrane bilayer sheets. This preparation, designated CHAPS-insoluble floating fraction (CHIEF), also contained a defined set of 20 other proteins and a single uncharged lipid. Cell surface biotinylation and preembedding immunoelectron microscopy both confirmed the plasma membrane origin of this preparation. The cell surface phosphodiesterase (PDE) and a downstream effector of cAR1, adenylate cyclase (ACA), were specifically localized in these structures, whereas the cell adhesion molecule gp80, most of the major cell surface membrane proteins, cytoskeletal components, the actin-binding integral membrane protein ponticulin, and G-protein alpha- and beta-subunits were absent. Overall, CHIFF represents about 3-5% of cell externally exposed membrane proteins. All of these results indicate that CHIFF is derived from specialized microdomains of the plasma membrane. The method of isolation is analogous to that of caveolae. However, we were unable to detect distinct caveolae-like structures on the cell surface associated with cAR1, which showed a diffuse staining profile. The discovery of CHIFF facilitates the purification of cAR1 and related signaling proteins and the biochemical characterization of receptor-mediated processes such as G-protein activation and desensitization. It also has important implications for the "fluid mosaic" model of the plasma membrane structures. Images PMID:9168471

Identification of detergent-resistant plasma membrane microdomains in dictyostelium: enrichment of signal transduction proteins.

PubMed

Xiao, Z; Devreotes, P N

1997-05-01

Unlike most other cellular proteins, the chemoattractant receptor, cAR1, of Dictyostelium is resistant to extraction by the zwitterionic detergent, CHAPS. We exploited this property to isolate a subcellular fraction highly enriched in cAR1 by flotation of CHAPS lysates of cells in sucrose density gradients. Immunogold electron microscopy studies revealed a homogeneous preparation of membrane bilayer sheets. This preparation, designated CHAPS-insoluble floating fraction (CHIEF), also contained a defined set of 20 other proteins and a single uncharged lipid. Cell surface biotinylation and preembedding immunoelectron microscopy both confirmed the plasma membrane origin of this preparation. The cell surface phosphodiesterase (PDE) and a downstream effector of cAR1, adenylate cyclase (ACA), were specifically localized in these structures, whereas the cell adhesion molecule gp80, most of the major cell surface membrane proteins, cytoskeletal components, the actin-binding integral membrane protein ponticulin, and G-protein alpha- and beta-subunits were absent. Overall, CHIFF represents about 3-5% of cell externally exposed membrane proteins. All of these results indicate that CHIFF is derived from specialized microdomains of the plasma membrane. The method of isolation is analogous to that of caveolae. However, we were unable to detect distinct caveolae-like structures on the cell surface associated with cAR1, which showed a diffuse staining profile. The discovery of CHIFF facilitates the purification of cAR1 and related signaling proteins and the biochemical characterization of receptor-mediated processes such as G-protein activation and desensitization. It also has important implications for the "fluid mosaic" model of the plasma membrane structures.

Late Cenozoic sedimentation and volcanism during transtensional deformation in Wingate Wash and the Owlshead Mountains, Death Valley

USGS Publications Warehouse

Luckow, H.G.; Pavlis, T.L.; Serpa, L.F.; Guest, B.; Wagner, D.L.; Snee, L.; Hensley, T.M.; Korjenkov, A.

2005-01-01

New 1:24,000 scale mapping, geochemical analyses of volcanic rocks, and Ar/Ar and tephrochronology analyses of the Wingate Wash, northern Owlshead Mountain and Southern Panamint Mountain region document a complex structural history constrained by syntectonic volcanism and sedimentation. In this study, the region is divided into five structural domains with distinct, but related, histories: (1) The southern Panamint domain is a structurally intact, gently south-tilted block dominated by a middle Miocene volcanic center recognized as localized hypabyssal intrusives surrounded by proximal facies pyroclastic rocks. This Miocene volcanic sequence is an unusual alkaline volcanic assemblage ranging from trachybasalt to rhyolite, but dominated by trachyandesite. The volcanic rocks are overlain in the southwestern Panamint Mountains by a younger (Late Miocene?) fanglomerate sequence. (2) An upper Wingate Wash domain is characterized by large areas of Quaternary cover and complex overprinting of older structure by Quaternary deformation. Quaternary structures record ???N-S shortening concurrent with ???E-W extension accommodated by systems of strike-slip and thrust faults. (3) A central Wingate Wash domain contains a complex structural history that is closely tied to the stratigraphic evolution. In this domain, a middle Miocene volcanic package contains two distinct assemblages; a lower sequence dominated by alkaline pyroclastic rocks similar to the southern Panamint sequence and an upper basaltic sequence of alkaline basalt and basanites. This volcanic sequence is in turn overlain by a coarse clastic sedimentary sequence that records the unroofing of adjacent ranges and development of ???N-S trending, west-tilted fault blocks. We refer to this sedimentary sequence as the Lost Lake assemblage. (4) The lower Wingate Wash/northern Owlshead domain is characterized by a gently north-dipping stratigraphic sequence with an irregular unconformity at the base developed on granitic basement. The unconformity is locally overlain by channelized deposits of older Tertiary(?) red conglomerate, some of which predate the onset of extensive volcanism, but in most of the area is overlain by a moderately thick package of Middle Miocene trachybasalt, trachyandesitic, ash flows, lithic tuff, basaltic cinder, basanites, and dacitic pyroclastic, debris, and lahar flows with localized exposures of sedimentary rocks. The upper part of the Miocene stratigraphic sequence in this domain is comprised of coarse grained-clastic sediments that are apparently middle Miocene based on Ar/Ar dating of interbedded volcanic rocks. This sedimentary sequence, however, is lithologically indistinguishable from the structurally adjacent Late Miocene Lost Lake assemblage and a stratigraphically overlying Plio-Pleistocene alluvial fan; a relationship that handicaps tracing structures through this domain. This domain is also structurally complex and deformed by a series of northwest-southeast-striking, east-dipping, high-angle oblique, sinistral, normal faults that are cut by left-lateral strike-slip faults. The contact between the southern Panamint domain and the adjacent domains is a complex fault system that we interpret as a zone of Late Miocene distributed sinistral slip that is variably overprinted in different portions of the mapped area. The net sinistral slip across the Wingate Wash fault system is estimated at 7-9 km, based on offset of Proterozoic Crystal Springs Formation beneath the middle Miocene unconformity to as much as 15 km based on offset volcanic facies in Middle Miocene rocks. To the south of Wingate Wash, the northern Owlshead Mountains are also cut by a sinistral, northwest-dipping, oblique normal fault, (referred to as the Filtonny Fault) with significant slip that separates the Lower Wingate Wash and central Owlshead domains. The Filtonny Fault may represent a young conjugate fault to the dextral Southern Death Valley fault system and may be the northwest

The Influence of Fluorination on Structure of the Trifluoroacetonitrile Water Complex

NASA Astrophysics Data System (ADS)

Lin, Wei; Wu, Anan; Lu, Xin; Obenchain, Daniel A.; Novick, Stewart E.

2015-06-01

Acetonitrile, CH_3CN, and trifluoroacetonitrile, CF_3CN, are symmetric tops. In a recent study of the rotational spectrum of the acetonitrile and water complex, it was observed that the structure was also an effective symmetric top, with the external hydrogen freely rotating about the O-H bond aligned towards the nitrogen of the cyanide of CH_3CN. Unlike the CH_3CN-H_2O complex, the CH_3CN-Ar and CF_3CN-Ar complexes were observed to be asymmetric tops. Having a series of symmetric and asymmetric top complexes of acetonitrile and trifluoracetonitrile for comparison, we report the rotational spectrum of the weakly bound complex between trifluoroacetonitrile and water. Rotational constants and quadrupole coupling constants will be presented, and the structure of CF_3CN-H_2O will be revealed. Lovas, F.J.; Sobhanadri, J. Microwave rotational spectral study of CH_3CN-H_2O and Ar-CH_3CN. J. Mol. Spetrosc. 2015, 307, 59-64. SPOILER ALERT: It's an asymmetric top.

The fate of the duplicated androgen receptor in fishes: a late neofunctionalization event?

PubMed Central

2008-01-01

Background Based on the observation of an increased number of paralogous genes in teleost fishes compared with other vertebrates and on the conserved synteny between duplicated copies, it has been shown that a whole genome duplication (WGD) occurred during the evolution of Actinopterygian fish. Comparative phylogenetic dating of this duplication event suggests that it occurred early on, specifically in teleosts. It has been proposed that this event might have facilitated the evolutionary radiation and the phenotypic diversification of the teleost fish, notably by allowing the sub- or neo-functionalization of many duplicated genes. Results In this paper, we studied in a wide range of Actinopterygians the duplication and fate of the androgen receptor (AR, NR3C4), a nuclear receptor known to play a key role in sex-determination in vertebrates. The pattern of AR gene duplication is consistent with an early WGD event: it has been duplicated into two genes AR-A and AR-B after the split of the Acipenseriformes from the lineage leading to teleost fish but before the divergence of Osteoglossiformes. Genomic and syntenic analyses in addition to lack of PCR amplification show that one of the duplicated copies, AR-B, was lost in several basal Clupeocephala such as Cypriniformes (including the model species zebrafish), Siluriformes, Characiformes and Salmoniformes. Interestingly, we also found that, in basal teleost fish (Osteoglossiformes and Anguilliformes), the two copies remain very similar, whereas, specifically in Percomorphs, one of the copies, AR-B, has accumulated substitutions in both the ligand binding domain (LBD) and the DNA binding domain (DBD). Conclusion The comparison of the mutations present in these divergent AR-B with those known in human to be implicated in complete, partial or mild androgen insensitivity syndrome suggests that the existence of two distinct AR duplicates may be correlated to specific functional differences that may be connected to the well-known plasticity of sex determination in fish. This suggests that three specific events have shaped the present diversity of ARs in Actinopterygians: (i) early WGD, (ii) parallel loss of one duplicate in several lineages and (iii) putative neofunctionalization of the same duplicate in percomorphs, which occurred a long time after the WGD. PMID:19094205

Reappraisal of Los Humeros Volcanic Complex by New U/Th Zircon and 40Ar/39Ar Dating: Implications for Greater Geothermal Potential

NASA Astrophysics Data System (ADS)

Carrasco-Núñez, G.; Bernal, J. P.; Dávila, P.; Jicha, B.; Giordano, G.; Hernández, J.

2018-01-01

Longevity and size of magmatic systems are fundamental factors for assessing the potential of a geothermal field. At Los Humeros volcanic complex (LHVC), the first caldera-forming event was reported at 460 ± 40 ka. New zircon U/Th and plagioclase 40Ar/39Ar dates of pre-, syn- and postcaldera volcanics allow a reappraisal of the evolution of the geothermally active LHVC. The age of the voluminous Xaltipan ignimbrite (115 km3 dense rock equivalent [DRE]) associated with the formation of the Los Humeros caldera is now constrained by two geochronometers (zircon U/Th and plagioclase 40Ar/39Ar dating) to 164 ± 4.2 ka, which postdates a long episode of precaldera volcanism (rhyolitic domes), the oldest age of which is 693.0 ± 1.9 ka (40Ar/39Ar). The inferred short residence time (around 5 ka) for the paroxysmal Xaltipan ignimbrite is indicative of rapid assembly of a large magma body and rejuvenation of the system due to recurrent recharge magmas, as it has been occurred in some other large magmatic systems. Younger ages than previously believed have been obtained also for the other voluminous explosive phases of the Faby fall tuff at ˜70 ka and the second caldera-forming Zaragoza ignimbrite with 15 km3 DRE, which erupted immediately after. Thus, the time interval that separates the two caldera-forming episodes at Los Humeros is only 94 kyr, which is a much shorter interval than suggested by previous K-Ar dates (410 kyr). This temporal proximity allows us to propose a caldera stage encompassing the Xaltipan and the Zaragoza ignimbrites, followed by emplacement at 44.8 ± 1.7 ka of rhyolitic magmas interpreted to represent a postcaldera, resurgent stage. Rhyolitic eruptions have also occurred during the Holocene (<7.3 ± 0.1 ka) along with olivine-rich basalts that suggest recharge of the system. The estimated large volume magmatic reservoir for Los Humeros (>˜1,200 km3) and these new ages indicating much younger caldera-forming volcanism than previously believed are fundamental factors in the application of classical conductive models of heat resource, enhancing the heat production capacity and favor a higher geothermal potential.

Evaluation of humic substances during co-composting of sewage sludge and corn stalk under different aeration rates.

PubMed

Li, Shuyan; Li, Danyang; Li, Jijin; Li, Guoxue; Zhang, Bangxi

2017-12-01

Sewage sludge and corn stalk were co-composted under different aeration rates 0.12 (AR0.12), 0.24 (AR0.24), 0.36 (AR0.36)L·kg -1 DMmin -1 , respectively. Transformation of humic substance was evaluated by a series of chemical and spectroscopic methods to reveal compost humification. Results showed that aeration rate could significantly affect compost stability and humification process. Humic acid contents in AR0.24 were significantly higher than those in the other two treatments. The final humic acid/fulvic acid ratios in AR0.12, AR0.24 and AR0.36 treatment were 1.0, 1.9 and 0.8, respectively, corresponding to the final E 4 /E 6 of 4.7, 3.2 and 5.5. Moreover, compost in AR0.24 treatment had a high stability degree due to the low C/N atom ratio and high C/H atom ratio. However, it is noteworthy that composting could not significantly affect the structure of HA in a 35-day period. These results indicate that composting with the aeration rate of 0.24L·kg -1 DMmin -1 could accelerated the humification process. Copyright © 2017 Elsevier Ltd. All rights reserved.