Enrichment of the Antibiotic Resistance Gene tet(L) in an Alkaline Soil Fertilized With Plant Derived Organic Manure.

PubMed

Peng, Shuang; Dolfing, Jan; Feng, Youzhi; Wang, Yiming; Lin, Xiangui

2018-01-01

Fifteen antibiotic resistance genes (ARGs) and intI1 , a gene involved in horizontal gene transfer (HGT) of ARGs, were quantified in three different soil samples from a 22 year old field experiment that had received inorganic fertilizer (NPK), organic manure (OM; a mixture of wheat straw, soybean oil cake and cotton cake), and control fields that had received no fertilizer and manure (CK). Tet (L) was the most abundant ARG in OM, which also contained considerable levels of intI1 . Molecular analysis of yearly collected archived soils over the past 22 years showed that tet (L) and intI1 were higher in OM soils than in NPK soils. The relative abundance of tet (L) was essentially constant during these years, while the level of intI1 in OM soils decreased over time. The main genotype of tet (L) was the same in archived and in fresh soil, OM, and irrigation water. Phylogenetic analysis of the 16S rRNA genes of tetracycline-resistant bacteria (TRB) isolates indicated that the Firmucutes carrying tet (L) in OM were similar to those in the OM soil, suggesting that OM transferred TRB into the OM soils where they survived. Almost all of the TRB isolated from OM carried tet (L) and belonged to the Firmicutes . Survival of bacteria from the organic manure that carried tet (L) may be the cause of the increased level of tet (L) in OM soil.

History and progress of the North American Soil Geochemical Landscapes Project, 2001-2010

USGS Publications Warehouse

Smith, David B.; Cannon, William F.; Woodruff, Laurel G.; Rivera, Francisco Moreira; Rencz, Andrew N.; Garrett, Robert G.

2012-01-01

In 2007, the U.S. Geological Survey, the Geological Survey of Canada, and the Mexican Geological Survey initiated a low-density (1 site per 1600 km2, 13323 sites) geochemical and mineralogical survey of North American soils (North American Soil Geochemical Landscapes Project). Sampling and analytical protocols were developed at a series of workshops in 20032004 and pilot studies were conducted from 20042007. The ideal sampling protocol at each site includes a sample from 05 cm depth, a composite of the soil A horizon, and a sample from the soil C horizon. The 3, HClO4, and HF. Separate methods are used for As, Hg, Se, and total C on this same size fraction. The major mineralogical components are determined by a quantitative X-ray diffraction method. Sampling in the conterminous U.S. was completed in 2010 (c. 4800 sites) with chemical and mineralogical analysis currently underway. In Mexico, approximately 66% of the sampling (871 sites) had been done by the end of 2010 with completion expected in 2012. After completing sampling in the Maritime provinces and portions of other provinces (472 sites, 7.6% of the total), Canada withdrew from the project in 2010. Preliminary results for a swath from the central U.S. to Florida clearly show the effects of soil parent material and climate on the chemical and mineralogical composition of soils. A sample archive will be established and made available for future investigations.

Climate dependency of tree growth suppressed by acid deposition effects on soils in Northwest Russia

USGS Publications Warehouse

Lawrence, G.B.; Lapenis, A.G.; Berggren, D.; Aparin, B.F.; Smith, K.T.; Shortle, W.C.; Bailey, S.W.; Varlyguin, D.L.; Babikov, B.

2005-01-01

Increased tree growth in temperate and boreal forests has been proposed as a direct consequence of a warming climate. Acid deposition effects on nutrient availability may influence the climate dependency of tree growth, however. This study presents an analysis of archived soil samples that has enabled changes in soil chemistry to be tracked with patterns of tree growth through the 20th century. Soil samples collected in 1926, 1964, and 2001, near St. Petersburg, Russia, showed that acid deposition was likely to have decreased root-available concentrations of Ca (an essential element) and increased root-available concentrations of Al (an inhibitor of Ca uptake). These soil changes coincided with decreased diameter growth and a suppression of climate-tree growth relationships in Norway spruce. Expected increases in tree growth from climate warming may be limited by decreased soil fertility in regions of northern and eastern Europe, and eastern North America, where Ca availability has been reduced by acidic deposition. ?? 2005 American Chemical Society.

Climate dependency of tree growth suppressed by acid deposition effects on soils in northwest Russia.

PubMed

Lawrence, Gregory B; Lapenis, Andrei G; Berggren, Dan; Aparin, Boris F; Smith, Kevin T; Shortle, Walter C; Bailey, Scott W; Varlyguin, Dmitry L; Babikov, Boris

2005-04-01

Increased tree growth in temperate and boreal forests has been proposed as a direct consequence of a warming climate. Acid deposition effects on nutrient availability may influence the climate dependency of tree growth, however. This study presents an analysis of archived soil samples that has enabled changes in soil chemistry to be tracked with patterns of tree growth through the 20th century. Soil samples collected in 1926, 1964, and 2001, near St. Petersburg, Russia, showed that acid deposition was likely to have decreased root-available concentrations of Ca (an essential element) and increased root-available concentrations of Al (an inhibitor of Ca uptake). These soil changes coincided with decreased diameter growth and a suppression of climate-tree growth relationships in Norway spruce. Expected increases in tree growth from climate warming may be limited by decreased soil fertility in regions of northern and eastern Europe, and eastern North America, where Ca availability has been reduced by acidic deposition.

National-Scale Changes in Soil Profile C and N in New Zealand Pastures are Determined by Land Use

NASA Astrophysics Data System (ADS)

Schipper, L. A.; Parfitt, R.; Ross, C.; Baisden, W. T.; Claydon, J.; Fraser, S.

2010-12-01

Grazed pasture is New Zealand’s predominant agricultural land-use and has been relatively recently developed from forest and native grasslands/shrub communities. From the 1850s onwards, land was cleared and exotic pastures established. Phosphorus fertilizer was increasingly used after 1950 which accelerated N fixation by clover. In the last two decades N fertilizers have been used, and grazing intensity has increased, thus affecting soil C and N. Re-sampling of 31 New Zealand soil profiles under grazed pasture measured surprisingly large losses of C and N over the last 2-3 decades (Schipper et al., 2007 Global Change Biology 13:1138-1144). These profiles were predominantly on the most intensively grazed flat land. We extended this re-sampling to 83 profiles (to 90 cm depth), to investigate whether changes in soil C and N stocks also occurred in less intensively managed pasture. Archived soils samples were analysed for total soil C and N alongside the newly collected samples. Intact cores were collected to determine bulk density through the profile. Over an average of 27 years, soils (0-30 cm) in flat dairy pastures significantly lost 0.73±0.16 Mg C ha-1y-1 and 57±16 kg N ha-1y-1 while we observed no change in soil C or N in flat pasture grazed by “dry stock” (e.g., sheep, beef), or in grazed tussock grasslands. Grazed hill country soils (0-30 cm) gained 0.52±0.18 Mg C ha-1y-1 and 66±18 kg N ha-1y-1. The losses of C and N were strongly correlated and C:N ratio has generally declined suggesting soils are becoming N saturated. Losses and gains also occurred in soil layers below 30 cm demonstrating that organic matter throughout the profile was responding to land use. The losses under dairying may be due to greater grazing pressure, fertilizer inputs and exports of C and N. There is evidence that grazing pressure reduces inputs of C below ground, reduces soil microbial C, and that dairy cow urine can mobilise C and N. Gains in hill country pastures may be due to long-term recovery from erosion and disturbance following land clearance. When changes were extrapolated across New Zealand taking into account the different areas of pastures, gains and losses cancelled one another (Table 1) but none-the-less demonstrate considerable alteration of basic soil properties at national scales, and show the usefulness of resampling sites providing that older samples have been archived.Table 1. Change in total C and total N of grazed land for top 30 cm extrapolated across New Zealand. SEM - standard error of the mean

Validation of mega composite sampling and nationwide mass inventories for 26 previously unmonitored contaminants in archived biosolids from the U.S National Biosolids Repository

PubMed Central

Chari, Bipin P.; Halden, Rolf U.

2012-01-01

In the present study, archived U.S biosolids from the 2001 Environmental Protection Agency (EPA) National Sewage Sludge Survey were analyzed with an expanded U.S EPA Method 1694, to determine the occurrence of 26 previously unmonitored pharmaceuticals and personal care products (PPCPs) among a total of 120 analytes. The study further served to examine the reproducibility of a mega-composite approach for creating chemical mass inventories in biosolids based on pooled samples from wastewater treatment plants (WWTPs) nationwide. Five mega-composites reflecting 94 WWTPs in 32 states and the District of Columbia were constructed from archived biosolids and analyzed by LC/ESI-MS/MS using a newly introduced analytical method expanding upon U.S EPA Method 1694. In addition, soil-biosolids mixtures from a mesocosm setup were analyzed to experimentally determine the half-lives of biosolids-borne compounds applied on U.S land. Among 59 analytes detected, 33 had been reported previously, whereas 26 are reported in biosolids for the first time, at levels ranging from 1.65 to 673 μg kg−1 dry weight. Newly recognized biosolids constituents were identified as Ca2+ channel blockers, antidepressants, diuretics, β-blockers and analgesics. Using a mass balance approach, the total loading of these 26 pharmaceuticals to U.S soils from biosolids land application was estimated at 5–15 tons year−1. Past and present datasets for 30 pharmaceuticals and personal care products (PPCPs) were determined to be statistically indistinguishable (paired t-test; p = 0.01). This study expands the list of PPCPs reported in U.S biosolids, provides the first estimates of nationwide release rates to and environmental half-lives in U.S agricultural soils, and confirms the utility of using mega-composite sampling for economical tracking of chemical inventories in biosolids on a national scale. PMID:22789759

Resampling soil profiles can constrain large-scale changes in the C cycle: obtaining robust information from radiocarbon measurements

NASA Astrophysics Data System (ADS)

Baisden, W. T.; Prior, C.; Lambie, S.; Tate, K.; Bruhn, F.; Parfitt, R.; Schipper, L.; Wilde, R. H.; Ross, C.

2006-12-01

Soil organic matter contains more C than terrestrial biomass and atmospheric CO2 combined, and reacts to climate and land-use change on timescales requiring long-term experiments or monitoring. The direction and uncertainty of soil C stock changes has been difficult to predict and incorporate in decision support tools for climate change policies. Moreover, standardization of approaches has been difficult because historic methods of soil sampling have varied regionally, nationally and temporally. The most common and uniform type of historic sampling is soil profiles, which have commonly been collected, described and archived in the course of both soil survey studies and research. Resampling soil profiles has considerable utility in carbon monitoring and in parameterizing models to understand the ecosystem responses to global change. Recent work spanning seven soil orders in New Zealand's grazed pastures has shown that, averaged over approximately 20 years, 31 soil profiles lost 106 g C m-2 y-1 (p=0.01) and 9.1 g N m{^-2} y-1 (p=0.002). These losses are unexpected and appear to extend well below the upper 30 cm of soil. Following on these recent results, additional advantages of resampling soil profiles can be emphasized. One of the most powerful applications afforded by resampling archived soils is the use of the pulse label of radiocarbon injected into the atmosphere by thermonuclear weapons testing circa 1963 as a tracer of soil carbon dynamics. This approach allows estimation of the proportion of soil C that is `passive' or `inert' and therefore unlikely to respond to global change. Evaluation of resampled soil horizons in a New Zealand soil chronosequence confirms that the approach yields consistent values for the proportion of `passive' soil C, reaching 25% of surface horizon soil C over 12,000 years. Across whole profiles, radiocarbon data suggest that the proportion of `passive' C in New Zealand grassland soil can be less than 40% of total soil C. Below 30 cm, 1 kg C m-2 or more may be reactive on decadal timescales, supporting evidence of soil C losses from throughout the soil profiles. Information from resampled soil profiles can be combined with additional contemporary measurements to test hypotheses about mechanisms for soil C changes. For example, Δ14C in excess of 200‰ in water extractable dissolved organic C (DOC) from surface soil horizons supports the hypothesis that decadal movement of DOC represents an important translocation of soil C. These preliminary results demonstrate that resampling whole soil profiles can support substantial progress in C cycle science, ranging from updating operational C accounting systems to the frontiers of research. Resampling can be complementary or superior to fixed-depth interval sampling of surface soil layers. Resampling must however be undertaken with relative urgency to maximize the potential interpretive power of bomb-derived radiocarbon.

Trace metal depositional patterns from an open pit mining activity as revealed by archived avian gizzard contents.

PubMed

Bendell, L I

2011-02-15

Archived samples of blue grouse (Dendragapus obscurus) gizzard contents, inclusive of grit, collected yearly between 1959 and 1970 were analyzed for cadmium, lead, zinc, and copper content. Approximately halfway through the 12-year sampling period, an open-pit copper mine began activities, then ceased operations 2 years later. Thus the archived samples provided a unique opportunity to determine if avian gizzard contents, inclusive of grit, could reveal patterns in the anthropogenic deposition of trace metals associated with mining activities. Gizzard concentrations of cadmium and copper strongly coincided with the onset of opening and the closing of the pit mining activity. Gizzard zinc and lead demonstrated significant among year variation; however, maximum concentrations did not correlate to mining activity. The archived gizzard contents did provide a useful tool for documenting trends in metal depositional patterns related to an anthropogenic activity. Further, blue grouse ingesting grit particles during the time of active mining activity would have been exposed to toxicologically significant levels of cadmium. Gizzard lead concentrations were also of toxicological significance but not related to mining activity. This type of "pulse" toxic metal exposure as a consequence of open-pit mining activity would not necessarily have been revealed through a "snap-shot" of soil, plant or avian tissue trace metal analysis post-mining activity. Copyright © 2010 Elsevier B.V. All rights reserved.

Chiral signatures of chlordanes indicate changing sources to the atmosphere over the past 30 years

NASA Astrophysics Data System (ADS)

Bidleman, Terry F.; Wong, Fiona; Backe, Cecilia; Södergren, Anders; Brorström-Lundén, Eva; Helm, Paul A.; Stern, Gary A.

2004-11-01

Chlordane was used as an insecticide for half a century until its withdrawal from the world market in 1997. Trans- and cis-chlordane (TC, CC) are racemic in the technical product, but undergo enantioselective degradation in soil to leave nonracemic residues. In most cases, the (+) enantiomer of TC and the (-) enantiomer of CC are depleted, leading to enantiomer fractions, EF = (+) / [ (+) + (-) ], that are < 0.500 for TC and > 0.500 for CC. Nonracemic EFs of TC and CC, showing the same degradation preference as soils, were found in 1998-2001 air samples from stations in Arctic Canada and Finland, and on the west coast of Sweden. Environmental samples representing different time periods of chlordane history were also examined in: (a) archived atmospheric deposition samples collected in Sweden, Slovakia and Iceland in 1971-1973, (b) soils from southern Sweden sampled in 2001 and (c) a laminated lake sediment core from the Canadian Arctic representing ∼50 years of accumulation. TC and CC were racemic or nearly so in the historical atmospheric deposition samples and nonracemic in the Swedish soils. The EF of TC in the dated lake sediment core decreased from nearly racemic in the past to nonracemic in recent times. These observations suggest that sources of chlordane to the atmosphere have changed over time and are now influenced to a greater extent by emission from soils.

Estimating Children's Soil/Dust Ingestion Rates through ...

EPA Pesticide Factsheets

Background: Soil/dust ingestion rates are important variables in assessing children’s health risks in contaminated environments. Current estimates are based largely on soil tracer methodology, which is limited by analytical uncertainty, small sample size, and short study duration. Objectives: The objective was to estimate site-specific soil/dust ingestion rates through reevaluation of the lead absorption dose–response relationship using new bioavailability data from the Bunker Hill Mining and Metallurgical Complex Superfund Site (BHSS) in Idaho, USA. Methods: The U.S. Environmental Protection Agency (EPA) in vitro bioavailability methodology was applied to archived BHSS soil and dust samples. Using age-specific biokinetic slope factors, we related bioavailable lead from these sources to children’s blood lead levels (BLLs) monitored during cleanup from 1988 through 2002. Quantitative regression analyses and exposure assessment guidance were used to develop candidate soil/dust source partition scenarios estimating lead intake, allowing estimation of age-specific soil/dust ingestion rates. These ingestion rate and bioavailability estimates were simultaneously applied to the U.S. EPA Integrated Exposure Uptake Biokinetic Model for Lead in Children to determine those combinations best approximating observed BLLs. Results: Absolute soil and house dust bioavailability averaged 33% (SD ± 4%) and 28% (SD ± 6%), respectively. Estimated BHSS age-specific soil/du

Natural and Cultural Preservation - Complementary Endeavors through Soil Archive Research

NASA Astrophysics Data System (ADS)

Ackermann, Oren; Frumin, Suembikya; Kolska Horwitz, Liora; Maeir, Aren M.; Weiss, Ehud; Zhevelev, Helena M.

2016-04-01

Soil is an excellent archive for the history of landscape components such as ancient topography, erosion and accumulation processes, and vegetation characterization. In special cases, the soil archive even preserves botanical faunal and mollusc assemblages, allowing for the production of an archive of organic species as well. Long-term human activities in the past have left their imprints on certain landscape systems, leading to the formation of landscapes composed of both cultural and natural assets. The aim of this presentation is to suggest a conceptual model, based on the soil archive, which enables the preservation and sustainability of such environments. The proposed area (eastern Mediterranean) underwent cycles of ancient site establishment and abandonment. When areas were occupied, the natural vegetation around settlements experienced human interventions such as woodcutting, grazing and horticulture. During site abandonment, these interventions ceased, resulting in vegetation regeneration, a reduction in biodiversity, increased fire hazard, etc. This ultimately led to the deterioration of the landscape system as well as the destruction of cultural assets such as ancient buildings and/or remnants. In order to preserve and restore these sites, a conceptual model that combines both modern natural conservation strategies and restoration of traditional land-use techniques is proposed. This model provides a complementary approach to existing natural and cultural preservation efforts.

Using 50 years of soil radiocarbon data to identify optimal approaches for estimating soil carbon residence times

NASA Astrophysics Data System (ADS)

Baisden, W. T.; Canessa, S.

2013-01-01

In 1959, Athol Rafter began a substantial programme of systematically monitoring the flow of 14C produced by atmospheric thermonuclear tests through organic matter in New Zealand soils under stable land use. A database of ∼500 soil radiocarbon measurements spanning 50 years has now been compiled, and is used here to identify optimal approaches for soil C-cycle studies. Our results confirm the potential of 14C to determine residence times, by estimating the amount of ‘bomb 14C’ incorporated. High-resolution time series confirm this approach is appropriate, and emphasise that residence times can be calculated routinely with two or more time points as little as 10 years apart. This approach is generally robust to the key assumptions that can create large errors when single time-point 14C measurements are modelled. The three most critical assumptions relate to: (1) the distribution of turnover times, and particularly the proportion of old C (‘passive fraction’), (2) the lag time between photosynthesis and C entering the modelled pool, (3) changes in the rates of C input. When carrying out approaches using robust assumptions on time-series samples, multiple soil layers can be aggregated using a mixing equation. Where good archived samples are available, AMS measurements can develop useful understanding for calibrating models of the soil C cycle at regional to continental scales with sample numbers on the order of hundreds rather than thousands. Sample preparation laboratories and AMS facilities can play an important role in coordinating the efficient delivery of robust calculated residence times for soil carbon.

Arsenic contamination in New Orleans soil: temporal changes associated with flooding.

PubMed

Rotkin-Ellman, Miriam; Solomon, Gina; Gonzales, Christopher R; Agwaramgbo, Lovell; Mielke, Howard W

2010-01-01

The flooding of New Orleans in late August and September 2005 caused widespread sediment deposition in the flooded areas of the city. Post-flood sampling by US EPA revealed that 37% of sediment samples exceeded Louisiana corrective screening guidelines for arsenic of 12mg/kg, but there was debate over whether this contamination was pre-existing, as almost no pre-flood soil sampling for arsenic had been done in New Orleans. In this study, archived soil samples collected in 1998-1999 were location-matched with 70 residential sites in New Orleans where post-flood arsenic concentrations were elevated. Those same locations were sampled again during the recovery period 18 months later. During the recovery period, sampling for arsenic was also done for the first time at school sites and playgrounds within the flooded zone. Every sample of sediment taken 1-10 months after the flood exceeded the arsenic concentration found in the matched pre-flood soils. The average difference between the two sampling periods was 19.67mg/kg (95% CI 16.63-22.71) with a range of 3.60-74.61mg/kg. At virtually all of these sites (97%), arsenic concentrations decreased substantially by 18 months into the recovery period when the average concentration of matched samples was 3.26mg/kg (95% CI 1.86-4.66). However, 21 (30%) of the samples taken during the recovery period still had higher concentrations of arsenic than the matched sample taken prior to the flooding. In addition, 33% of samples from schoolyards and 13% of samples from playgrounds had elevated arsenic concentrations above the screening guidelines during the recovery period. These findings suggest that the flooding resulted in the deposition of arsenic-contaminated sediments. Diminution of the quantity of sediment at many locations has significantly reduced overall soil arsenic concentrations, but some locations remain of concern for potential long-term soil contamination.

Laying the groundwork for NEON's continental-scale ecological research

NASA Astrophysics Data System (ADS)

Dethloff, G.; Denslow, M.

2013-12-01

The National Ecological Observatory Network (NEON) is designed to examine a suite of ecological issues. Field-collected data from 96 terrestrial and aquatic sites across the U.S. will be combined with remotely sensed data and existing continental-scale data sets. Field collections will include a range of physical and biological types, including soil, sediment, surface water, groundwater, precipitation, plants, animals, insects, and microbes as well as biological sub-samples such as leaf material, blood and tissue samples, and DNA extracts. Initial data analyses and identifications of approximately 175,000 samples per year will occur at numerous external laboratories when all sites are fully staffed in 2017. Additionally, NEON will archive biotic and abiotic specimens at collections facilities where they will be curated and available for additional analyses by the scientific community. The number of archived specimens is currently estimated to exceed 130,000 per year by 2017. We will detail how NEON is addressing the complexities and challenges around this set of analyses and specimens and how the resulting high-quality data can impact ecological understanding. The raw data returned from external laboratories that is quality checked and served by NEON will be the foundation for many NEON data products. For example, sequence-quality nucleic acids extracted from surface waters, benthic biofilms, and soil samples will be building blocks for data products on microbial diversity. The raw sequence data will also be available for uses such as evolutionary investigations, and the extracts will be archived so others can acquire them for additional research. Currently, NEON is establishing contracts for the analysis and archiving of field-collected samples through 2017. During this period, NEON will gather information on the progress and success of this large-scale effort in order to determine the most effective course to pursue with external facilities. Two areas that NEON already knows to evaluate are the need for geographic expertise in taxonomic identifications and the capacity necessary to handle the volume of samples. NEON is also addressing challenges associated with external entities and the logistics of sample movement, data formatting, data ingestion, and reporting. For example, NEON is considering tools, such as web APIs, which could allow efficient transfer of data from external facilities. Having a standard format in place for that data will be critical to transfer success and quality assessment. NEON is also working on the implementation of quality control measures for diverse analytical and taxonomic processes across laboratories, and is developing an external audit process. Additionally, given NEON's open access approach, the Network is focused on selecting a sample identification protocol that aids in tracking samples with more involved analytical needs and also allows maximum utility for the scientific community. Given the complex nature and breadth of the project, NEON will be developing novel sample management systems as well as metadata schemas. These efforts insure integrity and quality from field to external facility to archive for each sample taken, providing high-quality data now and confidence in future research stemming from raw data generated by NEON and its collection specimens.

Soil as an archive of coal-fired power plant mercury deposition.

PubMed

Rodríguez Martín, José Antonio; Nanos, Nikos

2016-05-05

Mercury pollution is a global environmental problem that has serious implications for human health. One of the most important sources of anthropogenic mercury emissions are coal-burning power plants. Hg accumulations in soil are associated with their atmospheric deposition. Our study provides the first assessment of soil Hg on the entire Spanish surface obtained from one sampling protocol. Hg spatial distribution was analysed with topsoil samples taken from 4000 locations in a regular sampling grid. The other aim was to use geostatistical techniques to verify the extent of soil contamination by Hg and to evaluate presumed Hg enrichment near the seven Spanish power plants with installed capacity above 1000 MW. The Hg concentration in Spanish soil fell within the range of 1-7564 μg kg(-1) (mean 67.2) and 50% of the samples had a concentration below 37 μg kg(-1). Evidence for human activity was found near all the coal-fired power plants, which reflects that metals have accumulated in the basin over many years. Values over 1000 μg kg(-1) have been found in soils in the vicinity of the Aboño, Soto de Ribera and Castellon power plants. However, soil Hg enrichment was detectable only close to the emission source, within an approximate range of only 15 km from the power plants. We associated this effect with airborne emissions and subsequent depositions as the potential distance through fly ash deposition. Hg associated with particles of ash tends to be deposited near coal combustion sources. Copyright © 2016 Elsevier B.V. All rights reserved.

National Inventory of Alkylphenol Ethoxylate Compounds in U.S. Sewage Sludges and Chemical Fate in Outdoor Soil Mesocosms

PubMed Central

Venkatesan, Arjun K.; Halden, Rolf U.

2012-01-01

We determined the first nationwide inventories of alkylphenol surfactants in U.S. sewage sludges (SS) using samples from the U.S. Environmental Protection Agency's 2001 national SS survey. Additionally, analysis of archived 3-year outdoor mesocosm samples served to determine chemical fates in SS-amended soil. Nonylphenol (NP) was the most abundant analyte (534±192 mg/kg) in SS composites, followed by its mono- and di-ethoxylates (62.1±28 and 59.5±52 mg/kg, respectively). The mean annual load of NP and its ethoxylates in SS was estimated at 2408–7149 metric tonnes, of which 1204–4289 is applied on U.S. land. NP compounds showed observable loss from SS/soil mixtures (1:2), with mean half-lives ranging from 301 to 495 days. Surfactant levels in U.S. SS ten-times in excess of European regulations, substantial releases to U.S. soils, and prolonged half-lives found under field conditions, all argue for the U.S. to follow Europe's move from 20 years ago to regulate these chemicals. PMID:23274446

Climatically driven loss of calcium in steppe soil as a sink for atmospheric carbon

USGS Publications Warehouse

Lapenis, A.G.; Lawrence, G.B.; Bailey, S.W.; Aparin, B.F.; Shiklomanov, A.I.; Speranskaya, N.A.; Torn, M.S.; Calef, M.

2008-01-01

During the last several thousand years the semi-arid, cold climate of the Russian steppe formed highly fertile soils rich in organic carbon and calcium (classified as Chernozems in the Russian system). Analysis of archived soil samples collected in Kemannaya Steppe Preserve in 1920, 1947, 1970, and fresh samples collected in 1998 indicated that the native steppe Chernozems, however, lost 17-28 kg m-2 of calcium in the form of carbonates in 1970-1998. Here we demonstrate that the loss of calcium was caused by fundamental shift in the steppe hydrologic balance. Previously unleached soils where precipitation was less than potential evapotranspiration are now being leached due to increased precipitation and, possibly, due to decreased actual evapotranspiration. Because this region receives low levels of acidic deposition, the dissolution of carbonates involves the consumption of atmospheric CO2. Our estimates indicate that this climatically driven terrestrial sink of atmospheric CO2 is ???2.1-7.4 g C m-2 a-1. In addition to the net sink of atmospheric carbon, leaching of pedogenic carbonates significantly amplified seasonal amplitude of CO2 exchange between atmosphere and steppe soil. Copyright 2008 by the American Geophysical Union.

History and evaluation of national-scale geochemical data sets for the United States

USGS Publications Warehouse

Smith, David B.; Smith, Steven M.; Horton, John D.

2013-01-01

Six national-scale, or near national-scale, geochemical data sets for soils or stream sediments exist for the United States. The earliest of these, here termed the ‘Shacklette’ data set, was generated by a U.S. Geological Survey (USGS) project conducted from 1961 to 1975. This project used soil collected from a depth of about 20 cm as the sampling medium at 1323 sites throughout the conterminous U.S. The National Uranium Resource Evaluation Hydrogeochemical and Stream Sediment Reconnaissance (NURE-HSSR) Program of the U.S. Department of Energy was conducted from 1975 to 1984 and collected either stream sediments, lake sediments, or soils at more than 378,000 sites in both the conterminous U.S. and Alaska. The sampled area represented about 65% of the nation. The Natural Resources Conservation Service (NRCS), from 1978 to 1982, collected samples from multiple soil horizons at sites within the major crop-growing regions of the conterminous U.S. This data set contains analyses of more than 3000 samples. The National Geochemical Survey, a USGS project conducted from 1997 to 2009, used a subset of the NURE-HSSR archival samples as its starting point and then collected primarily stream sediments, with occasional soils, in the parts of the U.S. not covered by the NURE-HSSR Program. This data set contains chemical analyses for more than 70,000 samples. The USGS, in collaboration with the Mexican Geological Survey and the Geological Survey of Canada, initiated soil sampling for the North American Soil Geochemical Landscapes Project in 2007. Sampling of three horizons or depths at more than 4800 sites in the U.S. was completed in 2010, and chemical analyses are currently ongoing. The NRCS initiated a project in the 1990s to analyze the various soil horizons from selected pedons throughout the U.S. This data set currently contains data from more than 1400 sites. This paper (1) discusses each data set in terms of its purpose, sample collection protocols, and analytical methods; and (2) evaluates each data set in terms of its appropriateness as a national-scale geochemical database and its usefulness for national-scale geochemical mapping.

Nature and origin of the resistant carbonaceous polymorphs involved the fossilization of biogenic soil-aggregates

NASA Astrophysics Data System (ADS)

Courty, M.-A.

2012-04-01

The rare occurrence of organic-rich surface horizons in soil archives is widely accepted to resulting from their rapid degradation. We intend here to further elucidate how pedogenic signatures that initially formed at the soil surface could resist over long timescales to burial processes. We focus on the structural evolution of the biogenic soil aggregates that is controlled by the complex interaction of bioturbation, root colonization, microbial decomposition, chemical weathering and physical processes. The nature and origin of carbonaceous components that could possibly contribute to the long term preservation of biogenic soil-aggregates is particularly examined. The study is based on the comparison of pedogenic aggregated microfacies from present-day situations and the ones encountered in soil archives from contrasting edaphic conditions: Arctic Holocene soils from Spitsbergen, hyper-arid soils from the Moche valley (Peru), Holocene semi-arid Mediterranean soils from Northern Syria, late Pleistocene paleosols from lake Mungo (South Wales Australia) and late Pleistocene paleosols from the Ardeche valley (France). The assemblage and composition of biogenic soil-aggregated horizons has been characterized under the binocular microscope and in thin sections. The basic components have been separated by water sieving. A typology of carbonaceous polymorphs and associated composite materials has been established under the binocular. They have been characterized by SEM-EDS, Raman spectrometry, X-ray diffraction and TEM. The comparative study shows that all the biogenic soil-aggregates from the soil archives contain a high amount of similar exotic components that contrast from the parent materials by their fresh aspect and their hydrophobic properties. This exotic assemblage comprises various types of aliphatic carbonaceous polymorphs (filaments, agglutinates, spherules) and aromatic ones (vitrous char, graphite), carbon cenospheres, fine grained sandstones and rock clasts which are all finely imbricated with phosphides, phosphates, sulphides, sulphates and native metals (Fe-Cr-Ni and Fe-Cr alloys, Ni, Al, Cu, Zn, Pb, As, Sn, Ag, Au, Bi). The 3D observations show that the carbonaceous filaments play a major role in the cohesion of the fine fraction. The carbonaceous components only start to decompose under HF attack and from 400°C heating. They do not display evidence of microbial degradation. The biogenic aggregates with high amount of carbonaceous polymorphs appear to have resisted to cryoturbation and to hard setting under water saturation. Biogenic micro-aggregates from present-day top soils only contain rare exotic components. In contrast to the ones of the soil archives, they display highly variable structural stability depending upon local edaphic conditions. The exotic assemblage of the stable biogenic micro-aggregates from the soil archives is shown to be similar to the range of terrestrial aerosols that are associated to meteor explosion (Courty et al., this volume). This suggests that the fossilized organic-rich surface horizons in soil archives would trace singular situations possibly marked by recurrent meteor explosion with high stratospheric aerosol production. Mechanisms explaining how the dual stratospheric/cosmic processes formed resistant carbon species from fossil combustible precursors yet remain to be investigated. Courty, Benoît and Vaillant (2012). Possible interaction of meteor explosion with stratospheric aerosols on cloud nucleation based on 2011 observations. Geophysical Research Abstracts Vol. 14, EGU2012.

"Interred with their bones" - linking soil micromorphology and chemistry to unlock the hidden archive of archaeological human burials

NASA Astrophysics Data System (ADS)

Brothwell, Don; Usai, Maria-Raimonda; Keely, Brendan; Pickering, Matt; Wilson, Clare

2010-05-01

"Interred with their bones" Acronym: InterArChive - an ERC-funded project *** " Friends, Romans, countrymen, lend me your ears; " I come to bury Caesar, not to praise him. " The evil that men do lives after them; " The good is oft 'interred with their bones'; " So let it be with Caesar. William Shakespeare, Julius Caesar, Act III, Scene 2. *** Background The state of decay within soils in archaeological graves is often such that degradable objects are not preserved in a condition that can be visually recognised. However, microscopic soil features, inorganic element distributions and organic residues can be measured. Thus, archaeological burial soils have the potential to reveal signatures of decay; pre-burial treatment; presence and nature of associated clothing and perishable artefacts; diet of the individual; cause of death; evidence of morbidity and drug-use. Aims • To develop and test a multidisciplinary approach linking soil micromorphology and chemistry to recover environmental and cultural information; • Revealing the hidden archaeological archive within the burial soil • Developing soil sampling and analysis recommendations for archaeological human burials Methods 1: Sampling and soil field description from archaeological sites contrasting in soil, geology, age, and culture and from experimental piglet burials 2: Microscopic/micromorphological analysis (micro-scale observations) of remains and features in burial soils. We will establish the order of occurrence, spatial patterns, displacement, mode of formation and decay of micromorphological features including exotic components, parasites, hair and remnants of footwear and clothing [cf. pilot study of soils from Yemen]; microfabrics and textural pedofeatures, also to facilitate resolution of body decay products from other accumulations. 3: Microprobe analysis (nano-scale) will generate elemental maps of soil thin sections, allowing identification of features with distinct chemical signatures, including those not identifiable by micromorphology. 4: Organic chemical analysis: Organic residues will be analysed by gas (GC) or liquid (LC) chromatography and selected fractions by mass spectrometry (MS; GC-MS and LC-MS). MALDI imaging will produce image maps of the soil sections with false color images representing lipids, proteins and peptides Relevance of the research and expected results This soil study will reveal hidden secrets that inform understanding of cultural practices of and environmental conditions experienced by past civilisations. It will deliver a comprehensive inventory of soil morphology and chemistry for a wide range of archaeological human burial environments, linking morphological and chemical characteristics both at a general level and at a level that visually and chemically resolves individual microscopic remains. Thus, excavation of archaeological human graves, for cultural reconstruction and to understand mortuary practices, archaeological burial practices and aspects of human health, will be enhanced dramatically.

Sample introducing apparatus and sample modules for mass spectrometer

DOEpatents

Thompson, Cyril V.; Wise, Marcus B.

1993-01-01

An apparatus for introducing gaseous samples from a wide range of environmental matrices into a mass spectrometer for analysis of the samples is described. Several sample preparing modules including a real-time air monitoring module, a soil/liquid purge module, and a thermal desorption module are individually and rapidly attachable to the sample introducing apparatus for supplying gaseous samples to the mass spectrometer. The sample-introducing apparatus uses a capillary column for conveying the gaseous samples into the mass spectrometer and is provided with an open/split interface in communication with the capillary and a sample archiving port through which at least about 90 percent of the gaseous sample in a mixture with an inert gas that was introduced into the sample introducing apparatus is separated from a minor portion of the mixture entering the capillary discharged from the sample introducing apparatus.

Progress, Potential and Pitfalls in the Use of Bomb 14C to Constrain Soil Carbon Dynamics

NASA Astrophysics Data System (ADS)

Baisden, W. T.

2007-12-01

Forty four years have passed since atmospheric testing of thermonuclear weapons injected a major 14C spike into the atmosphere-biosphere-hydrosphere system. The use of bomb 14C, in combination with millennial decay of 14C, remains the most effective empirical tool for constraining rates of carbon (C) cycling in soils at timescales beyond experimental manipulations (>5 years). In the last 20 years, accelerator mass spectrometry has greatly increased the potential and throughput of soil 14C studies. At present, atmospheric Δ14C appears to be stabilizing at more constant values as a result of reinjection of bomb 14C from decadal storage in forests and soils. This means that current and future studies using bomb 14C have different sensitivities and uncertainties compared to those carried out during periods of rapid Δ14C decline such as the 1970s, 80s and 90s. Bomb 14C proves most effective when archived soil samples are available: simply using bulk Δ14C from samples collected at two or more times can surpass single time point Δ14C from soil fractions in providing robust C cycling rates. Of course, measurement of Δ14C in soil fractions from time series samples can significantly improve estimates of C cycling parameters. Samples collected between ca. 1965 and 1995 have now greatly surpassed pre-bomb samples in utility, although pre-bomb samples retain considerable usefulness for estimating the size of inert (millennial) C pools. Major pitfalls in the use of bomb 14C, particularly for single time point samples and fractions, are mainly associated with model assumptions. For example, calculated residence times can be highly sensitive to a minor component of old C (<10% of total C). Similarly, calculated residence times are also highly dependent upon rates of soil C accumulation or loss. A final key source of error is lag times between C fixation from atmospheric CO2 and incorporation in the measured soil C pool, either due to long-lived plant tissue, or residence times in other soil pools/horizons. All work using Δ14C should consider sensitivity and uncertainty related to these issues. Major potential exists in the use of Δ14C to constrain soil C dynamics as a function of soil depth, in relation to major unexplained losses of soil C, and to probe the mechanisms and rates of soil organic matter stabilization. These areas of major potential all lay outside conventional use of Δ14C to calculate simple residence times.

A model based on Rock-Eval thermal analysis to quantify the size of the centennially persistent organic carbon pool in temperate soils

NASA Astrophysics Data System (ADS)

Cécillon, Lauric; Baudin, François; Chenu, Claire; Houot, Sabine; Jolivet, Romain; Kätterer, Thomas; Lutfalla, Suzanne; Macdonald, Andy; van Oort, Folkert; Plante, Alain F.; Savignac, Florence; Soucémarianadin, Laure N.; Barré, Pierre

2018-05-01

Changes in global soil carbon stocks have considerable potential to influence the course of future climate change. However, a portion of soil organic carbon (SOC) has a very long residence time ( > 100 years) and may not contribute significantly to terrestrial greenhouse gas emissions during the next century. The size of this persistent SOC reservoir is presumed to be large. Consequently, it is a key parameter required for the initialization of SOC dynamics in ecosystem and Earth system models, but there is considerable uncertainty in the methods used to quantify it. Thermal analysis methods provide cost-effective information on SOC thermal stability that has been shown to be qualitatively related to SOC biogeochemical stability. The objective of this work was to build the first quantitative model of the size of the centennially persistent SOC pool based on thermal analysis. We used a unique set of 118 archived soil samples from four agronomic experiments in northwestern Europe with long-term bare fallow and non-bare fallow treatments (e.g., manure amendment, cropland and grassland) as a sample set for which estimating the size of the centennially persistent SOC pool is relatively straightforward. At each experimental site, we estimated the average concentration of centennially persistent SOC and its uncertainty by applying a Bayesian curve-fitting method to the observed declining SOC concentration over the duration of the long-term bare fallow treatment. Overall, the estimated concentrations of centennially persistent SOC ranged from 5 to 11 g C kg-1 of soil (lowest and highest boundaries of four 95 % confidence intervals). Then, by dividing the site-specific concentrations of persistent SOC by the total SOC concentration, we could estimate the proportion of centennially persistent SOC in the 118 archived soil samples and the associated uncertainty. The proportion of centennially persistent SOC ranged from 0.14 (standard deviation of 0.01) to 1 (standard deviation of 0.15). Samples were subjected to thermal analysis by Rock-Eval 6 that generated a series of 30 parameters reflecting their SOC thermal stability and bulk chemistry. We trained a nonparametric machine-learning algorithm (random forests multivariate regression model) to predict the proportion of centennially persistent SOC in new soils using Rock-Eval 6 thermal parameters as predictors. We evaluated the model predictive performance with two different strategies. We first used a calibration set (n = 88) and a validation set (n = 30) with soils from all sites. Second, to test the sensitivity of the model to pedoclimate, we built a calibration set with soil samples from three out of the four sites (n = 84). The multivariate regression model accurately predicted the proportion of centennially persistent SOC in the validation set composed of soils from all sites (R2 = 0.92, RMSEP = 0.07, n = 30). The uncertainty of the model predictions was quantified by a Monte Carlo approach that produced conservative 95 % prediction intervals across the validation set. The predictive performance of the model decreased when predicting the proportion of centennially persistent SOC in soils from one fully independent site with a different pedoclimate, yet the mean error of prediction only slightly increased (R2 = 0.53, RMSEP = 0.10, n = 34). This model based on Rock-Eval 6 thermal analysis can thus be used to predict the proportion of centennially persistent SOC with known uncertainty in new soil samples from different pedoclimates, at least for sites that have similar Rock-Eval 6 thermal characteristics to those included in the calibration set. Our study reinforces the evidence that there is a link between the thermal and biogeochemical stability of soil organic matter and demonstrates that Rock-Eval 6 thermal analysis can be used to quantify the size of the centennially persistent organic carbon pool in temperate soils.

Soil archives of a Fluvisol: Subsurface analysis and soil history of the medieval city centre of Vlaardingen, the Netherlands - an integral approach

NASA Astrophysics Data System (ADS)

Kluiving, Sjoerd; De Ridder, Tim; Van Dasselaar, Marcel; Roozen, Stan; Prins, Maarten; Van Mourik, Jan

2016-04-01

In Medieval times the city of Vlaardingen (the Netherlands) was strategically located on the confluence of three rivers, the Meuse, the Merwede and the Vlaarding. A church of early 8th century was already located here. In a short period of time Vlaardingen developed into an international trading place, the most important place in the former county of Holland. Starting from the 11th century the river Meuse threatened to flood the settlement. These floods have been registered in the archives of the fluvisol and were recognised in a multidisciplinary sedimentary analysis of these archives. To secure the future of this vulnerable soil archive currently an extensive interdisciplinary research (76 mechanical drill holes, grain size analysis (GSA), thermo-gravimetric analysis (TGA), archaeological remains, soil analysis, dating methods, micromorphology, and microfauna has started in 2011 to gain knowledge on the sedimentological and pedological subsurface of the mound as well as on the well-preserved nature of the archaeological evidence. Pedogenic features are recorded with soil descriptive, micromorphological and geochemical (XRF) analysis. The soil sequence of 5 meters thickness exhibits a complex mix of 'natural' as well as 'anthropogenic layering' and initial soil formation that enables to make a distinction for relatively stable periods between periods with active sedimentation. In this paper the results of this large-scale project are demonstrated in a number of cross-sections with interrelated geological, pedological and archaeological stratification. Distinction between natural and anthropogenic layering is made on the occurrence of chemical elements phosphor and potassium. A series of four stratigraphic / sedimentary units record the period before and after the flooding disaster. Given the many archaeological remnants and features present in the lower units, we assume that the medieval landscape was drowned while it was inhabited in the 12th century AD. After a final drowning phase in the 13th century, as a reaction to it, inhabitants started to raise the surface.

Sample introducing apparatus and sample modules for mass spectrometer

DOEpatents

Thompson, C.V.; Wise, M.B.

1993-12-21

An apparatus for introducing gaseous samples from a wide range of environmental matrices into a mass spectrometer for analysis of the samples is described. Several sample preparing modules including a real-time air monitoring module, a soil/liquid purge module, and a thermal desorption module are individually and rapidly attachable to the sample introducing apparatus for supplying gaseous samples to the mass spectrometer. The sample-introducing apparatus uses a capillary column for conveying the gaseous samples into the mass spectrometer and is provided with an open/split interface in communication with the capillary and a sample archiving port through which at least about 90 percent of the gaseous sample in a mixture with an inert gas that was introduced into the sample introducing apparatus is separated from a minor portion of the mixture entering the capillary discharged from the sample introducing apparatus. 5 figures.

Information Requirements for Integrating Spatially Discrete, Feature-Based Earth Observations

NASA Astrophysics Data System (ADS)

Horsburgh, J. S.; Aufdenkampe, A. K.; Lehnert, K. A.; Mayorga, E.; Hsu, L.; Song, L.; Zaslavsky, I.; Valentine, D. L.

2014-12-01

Several cyberinfrastructures have emerged for sharing observational data collected at densely sampled and/or highly instrumented field sites. These include the CUAHSI Hydrologic Information System (HIS), the Critical Zone Observatory Integrated Data Management System (CZOData), the Integrated Earth Data Applications (IEDA) and EarthChem system, and the Integrated Ocean Observing System (IOOS). These systems rely on standard data encodings and, in some cases, standard semantics for classes of geoscience data. Their focus is on sharing data on the Internet via web services in domain specific encodings or markup languages. While they have made progress in making data available, it still takes investigators significant effort to discover and access datasets from multiple repositories because of inconsistencies in the way domain systems describe, encode, and share data. Yet, there are many scenarios that require efficient integration of these data types across different domains. For example, understanding a soil profile's geochemical response to extreme weather events requires integration of hydrologic and atmospheric time series with geochemical data from soil samples collected over various depth intervals from soil cores or pits at different positions on a landscape. Integrated access to and analysis of data for such studies are hindered because common characteristics of data, including time, location, provenance, methods, and units are described differently within different systems. Integration requires syntactic and semantic translations that can be manual, error-prone, and lossy. We report information requirements identified as part of our work to define an information model for a broad class of earth science data - i.e., spatially-discrete, feature-based earth observations resulting from in-situ sensors and environmental samples. We sought to answer the question: "What information must accompany observational data for them to be archivable and discoverable within a publication system as well as interpretable once retrieved from such a system for analysis and (re)use?" We also describe development of multiple functional schemas (i.e., physical implementations for data storage, transfer, and archival) for the information model that capture the requirements reported here.

Soil formation in the Tsauchab Valley, Namibia

NASA Astrophysics Data System (ADS)

Eden, Marie; Bens, Oliver; Ramisch, Arne; Schwindt, Daniel; Völkel, Jörg

2016-04-01

The BMBF-funded project GeoArchives (Spaces) investigates soils and sediments in Southern Africa. A focus area lies on the Tsauchab Valley (Namibia), South of the Naukluft mountain range (24°26'40'' S, 16°10'40'' E). On a gently sloping alluvial fan facing East towards the river, the surface is characterized by a desert pavement covering soils used as farmland. The landscape units were mapped and the area at the lower slope of a hill was divided into three units: a rinsing surface and a gravel plain, separated by a channel. On these surfaces soil profiles were excavated. Profile description followed the German system (Bodenkundliche Kartieranleitung KA 5) and disturbed samples were taken at various depths and analysed in the lab. Undisturbed soil cores with a volume of 100 cm³ were taken just below the surface at a depth of ~1-6 cm. Lab analyses included texture and gravel content, colour, pH, electrical conductivity, carbonates, CNS, cation exchange capacity, pedogenic oxides, main and trace elements (XRF), and clay mineral distribution (XRD). Undisturbed samples were used to determine soil water retention curve, air permeability and bulk density. The profiles revealed moderately developed cambic soils rich in clay minerals and with total carbon contents ranging up to 1.8 %, bearing shrubs and after episodic rainfall a dense grass vegetation. Their genesis is discussed and interpreted in the context of the landscape and climate history of this semi-desert environment.

Effect of soil property uncertainties on permafrost thaw projections: a calibration-constrained analysis: Modeling Archive

DOE Data Explorer

J.C. Rowland; D.R. Harp; C.J. Wilson; A.L. Atchley; V.E. Romanovsky; E.T. Coon; S.L. Painter

2016-02-02

This Modeling Archive is in support of an NGEE Arctic publication available at doi:10.5194/tc-10-341-2016. This dataset contains an ensemble of thermal-hydro soil parameters including porosity, thermal conductivity, thermal conductivity shape parameters, and residual saturation of peat and mineral soil. The ensemble was generated using a Null-Space Monte Carlo analysis of parameter uncertainty based on a calibration to soil temperatures collected at the Barrow Environmental Observatory site by the NGEE team. The micro-topography of ice wedge polygons present at the site is included in the analysis using three 1D column models to represent polygon center, rim and trough features. The Arctic Terrestrial Simulator (ATS) was used in the calibration to model multiphase thermal and hydrological processes in the subsurface.

Soil archives of a Fluvisol, part II. Archaeostratigraphical model of the subsurface of the medieval city centre of Vlaardingen, the Netherlands

NASA Astrophysics Data System (ADS)

Kluiving, Sjoerd; De Ridder, Tim; van Dasselaar, Marcel; Prins, Maarten

2017-04-01

In Medieval times the city of Vlaardingen (the Netherlands) was strategically located on the confluence of three rivers, the Meuse, the Merwede and the Vlaarding. A church of early 8th century was already located here. In a short period of time Vlaardingen developed into an international trading place, the most important place in the former county of Holland. Starting from the 11th century the river Meuse threatened to flood the settlement. These floods have been registered in the archives of the fluvisol and were recognised in a multidisciplinary sedimentary analysis of these archives. To secure the future of this vulnerable soil archive an extensive interdisciplinary research (76 mechanical drill holes, grain size analysis (GSA), thermo-gravimetric analysis (TGA), archaeological remains, soil analysis, dating methods, micromorphology, and microfauna has started in 2011 to gain knowledge on the sedimentological and pedological subsurface of the mound as well as on the well-preserved nature of the archaeological evidence. Pedogenic features are recorded with soil descriptive, micromorphological and geochemical (XRF) analysis. The soil sequence of 5 meters thickness exhibits a complex mix of 'natural' as well as 'anthropogenic layering' and initial soil formation that enables to make a distinction for relatively stable periods between periods with active sedimentation. In this paper the results of this large-scale project are demonstrated in a number of cross-sections with interrelated geological, pedological and archaeological stratification. Distinction between natural and anthropogenic layering is made on the occurrence of chemical elements phosphor and potassium. A series of four stratigraphic / sedimentary units record the period before and after the flooding disaster. Given the many archaeological remnants and features present in the lower units, we know that the medieval landscape was drowned while it was inhabited in the 12th century AD. After a final drowning phase in the 13th century, as a reaction to it, inhabitants started to raise the surface (Kluiving et al, 2016). In this presentation we discuss new coring and micromorphological data from the city center of Vlaardingen, and we aim to fine tune the flooding history in the town in the Late Medieval period in two approaches: 1. combining micromorphological results with new coring data: 2. testing archaeostratigraphical model of Vlaardingen Stadshart (Kluiving et al, 2016), focussing on Late Medieval fluvial systems, 2, 3 and 3.1. Reference Kluiving, S.J., Ridder, T. de, Dasselaar, M. van, Roozen, S. and Prins, M. 2016. Soil archives of a Fluvisol: subsurface analysis and soil history of the medieval city centre of Vlaardingen, the Netherlands - an integral approach. SOIL, 2, 271-285, 2016. doi:10.5194/soil-2-271-2016

BOREAS TE-1 SSA-Fen Soil Profile Nutrient Data

NASA Technical Reports Server (NTRS)

Papagno, Andrea; Anderson, Darwin; Newcomer, Jeffrey A. (Editor); Hall, Forrest G. (Editor)

2000-01-01

The BOREAS TE-1 team collected various data to characterize the soil-plant systems in the BOREAS SSA. Particular emphasis was placed on nutrient biochemistry, the stores and transfers of organic carbon, and how the characteristics were related to measured methane fluxes. The overall traniect in the Prince Albert National Park (Saskatchewan, Canada) included the major plant communities and related soils that occurred in that section of the boreal forest. Soil physical, chemical, and biological measurements along the transect were used to characterize the static environment, which allowed them to be related to methane fluxes. Chamber techniques were used to provide a measure of methane production/uptake. Chamber measurements coupled with flask sampling were used to determine the seasonality of methane fluxes. This particular data set contains soil profile measurements of various nutrients at the SSA-Fen site. The data were collected from 23-May to 21-Oct- 1994. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Pharmaceuticals and Personal Care Products in Archived U.S. Biosolids from the 2001 EPA National Sewage Sludge Survey

PubMed Central

McClellan, Kristin; Halden, Rolf U.

2010-01-01

In response to the U.S. National Academies’ call for a better assessment of chemical pollutants contained in the approximately 6.9 million dry tons of digested municipal sludge produced annually in the United States, the mean concentration of 72 pharmaceuticals and personal care products (PPCP) were determined in 110 biosolids samples collected by the U.S. Environmental Protection Agency (EPA) in its 2001 National Sewage Sludge Survey. Composite samples of archived biosolids, collected at 94 U.S. wastewater treatment plants from 32 states and the District of Columbia, were analyzed by liquid chromatography tandem mass spectrometry using EPA Method 1694. Thirty-eight (54%) of the 72 analytes were detected in at least one composite sample at concentrations ranging from 0.002 to 48 mg kg−1 dry weight. Triclocarban and triclosan were the most abundant analytes with mean concentrations of 36 ± 8 and 12.6 ± 3.8 mg kg−1 (n = 5), respectively, accounting for 65% of the total PPCP mass found. The loading to U.S. soils from nationwide biosolids recycling was estimated at 210–250 metric tons per year for the sum of the 72 PPCPs investigated. The results of this nationwide reconnaissance of PPCPs in archived U.S. biosolids mirror in contaminant occurrences, frequencies and concentrations, those reported by the U.S. EPA for samples collected in 2006/07. This demonstrates that PPCP releases in U.S. biosolids have been ongoing for many years and the most abundant PPCPs appear to show limited fluctuations in mass over time when assessed on a nationwide basis. The here demonstrated use of five mega composite samples holds promise for conducting cost-effective, routine monitoring on a regional basis. PMID:20106500

The magnesium isotope record of cave carbonate archives

NASA Astrophysics Data System (ADS)

Riechelmann, S.; Buhl, D.; Schröder-Ritzrau, A.; Riechelmann, D. F. C.; Richter, D. K.; Vonhof, H. B.; Wassenburg, J. A.; Geske, A.; Spötl, C.; Immenhauser, A.

2012-05-01

Here we explore the potential of time-series magnesium (δ26Mg) isotope data as continental climate proxies in speleothem calcite archives. For this purpose, a total of six Pleistocene and Holocene stalagmites from caves in Germany, Morocco and Peru and two flowstones from a cave in Austria were investigated. These caves represent the semi-arid to arid (Morocco), the warm-temperate (Germany), the equatorial-humid (Peru) and the cold-humid (Austria) climate zones. Changes in the calcite magnesium isotope signature with time are placed against carbon and oxygen isotope records from these speleothems. Similar to other proxies, the non-trivial interaction of a number of environmental, equilibrium and non-equilibrium processes governs the δ26Mg fractionation in continental settings. These include the different sources of magnesium isotopes such as rain water or snow as well as soil and hostrock, soil zone biogenic activity, shifts in silicate versus carbonate weathering ratios and residence time of water in the soil and karst zone. Pleistocene stalagmites from Morocco show the lowest mean δ26Mg values (GDA: -4.26 ± 0.07 ‰ and HK3: -4.17 ± 0.15 ‰) and the data are well explained in terms of changes in aridity over time. The Pleistocene to Holocene stalagmites from Peru show the highest mean value (NC-A and NC-B δ26Mg: -3.96 ± 0.04 ‰) but only minor variations in Mg-isotope composition, which is in concert with the rather stable equatorial climate at this site. Holocene stalagmites from Germany (AH-1 mean δ26Mg: -4.01 ± 0.07 ‰; BU 4 mean δ26Mg: -4.20 ± 0.10 ‰) record changes in outside air temperature as driving factor rather than rainfall amount. The alpine Pleistocene flowstones from Austria (SPA 52: -3.00 ± 0.73 ‰; SPA 59: -3.70 ± 0.43 ‰) are affected by glacial versus interglacial climate change with outside air temperature affecting soil zone activity and weathering balance. Several data points in the Austrian and two data points in the German speleothems are shifted to higher values due to sampling in detrital layers (Mg-bearing clay minerals) of the speleothems. The data and their interpretation shown here highlight the potential but also the limitations of the magnesium isotope proxy applied in continental climate research. An obvious potential lies in its sensitivity for even subtle changes in soil-zone parameters, a hitherto rather poorly understood but extremely important component in cave archive research. Limitations are most obvious in the low resolution and high sample amount needed for analysis. Future research should focus on experimental and conceptual aspects including quantitative and well calibrated leaching and precipitation experiments.

The magnesium isotope record of cave carbonate archives

NASA Astrophysics Data System (ADS)

Riechelmann, S.; Buhl, D.; Schröder-Ritzrau, A.; Riechelmann, D. F. C.; Richter, D. K.; Vonhof, H. B.; Wassenburg, J. A.; Geske, A.; Spötl, C.; Immenhauser, A.

2012-11-01

Here we explore the potential of magnesium (δ26Mg) isotope time-series data as continental climate proxies in speleothem calcite archives. For this purpose, a total of six Pleistocene and Holocene stalagmites from caves in Germany, Morocco and Peru and two flowstones from a cave in Austria were investigated. These caves represent the semi-arid to arid (Morocco), the warm-temperate (Germany), the equatorial-humid (Peru) and the cold-humid (Austria) climate zones. Changes in the calcite magnesium isotope signature with time are compared against carbon and oxygen isotope records from these speleothems. Similar to other proxies, the non-trivial interaction of a number of environmental, equilibrium and disequilibrium processes governs the δ26Mg fractionation in continental settings. These include the different sources of magnesium isotopes such as rainwater or snow as well as soil and host rock, soil zone biogenic activity, shifts in silicate versus carbonate weathering ratios and residence time of water in the soil and karst zone. Pleistocene stalagmites from Morocco show the lowest mean δ26Mg values (GDA: -4.26 ± 0.07‰ and HK3: -4.17 ± 0.15‰), and the data are well explained in terms of changes in aridity over time. The Pleistocene to Holocene stalagmites from Peru show the highest mean value of all stalagmites (NC-A and NC-B δ26Mg: -3.96 ± 0.04‰) but only minor variations in Mg-isotope composition, which is consistent with the rather stable equatorial climate at this site. Holocene stalagmites from Germany (AH-1 mean δ26Mg: -4.01 ± 0.07‰; BU 4 mean δ26Mg: -4.20 ± 0.10‰) suggest changes in outside air temperature was the principal driver rather than rainfall amount. The alpine Pleistocene flowstones from Austria (SPA 52: -3.00 ± 0.73‰; SPA 59: -3.70 ± 0.43‰) are affected by glacial versus interglacial climate change with outside air temperature affecting soil zone activity and weathering balance. Several δ26Mg values of the Austrian and two δ26Mg values of the German speleothems are shifted to higher values due to sampling in detrital layers (Mg-bearing clay minerals) of the speleothems. The data and their interpretation shown here highlight the potential but also the limitations of the magnesium isotope proxy applied in continental climate research. An obvious potential lies in its sensitivity for even subtle changes in soil-zone parameters, a hitherto rather poorly understood but extremely important component in cave archive research. Limitations are most obvious in the low resolution and high sample amount needed for analysis. Future research should focus on experimental and conceptual aspects including quantitative and well-calibrated leaching and precipitation experiments.

Influences and interactions of inundation, peat, and snow on active layer thickness: Modeling Archive

DOE Data Explorer

Scott Painter; Ethan Coon; Cathy Wilson; Dylan Harp; Adam Atchley

2016-04-21

This Modeling Archive is in support of an NGEE Arctic publication currently in review [4/2016]. The Advanced Terrestrial Simulator (ATS) was used to simulate thermal hydrological conditions across varied environmental conditions for an ensemble of 1D models of Arctic permafrost. The thickness of organic soil is varied from 2 to 40cm, snow depth is varied from approximately 0 to 1.2 meters, water table depth was varied from -51cm below the soil surface to 31 cm above the soil surface. A total of 15,960 ensemble members are included. Data produced includes the third and fourth simulation year: active layer thickness, time of deepest thaw depth, temperature of the unfrozen soil, and unfrozen liquid saturation, for each ensemble member. Input files used to run the ensemble are also included.

Isotope Tracing of Long-Term Cadmium Fluxes in an Agricultural Soil.

PubMed

Salmanzadeh, Mahdiyeh; Hartland, Adam; Stirling, Claudine H; Balks, Megan R; Schipper, Louis A; Joshi, Chaitanya; George, Ejin

2017-07-05

Globally widespread phosphate fertilizer applications have resulted in long-term increases in the concentration of cadmium (Cd) in soils. The accumulation of this biotoxic, and bioaccumulative metal presents problems for the management of soil-plant-animal systems, because the magnitude and direction of removal fluxes (e.g., crop uptake, leaching) have been difficult to estimate. Here, Cd isotopic compositions (δ 114/110 Cd) of archived fertilizer and soil samples from a 66 year-long agricultural field trial in Winchmore, New Zealand, were used to constrain the Cd soil mass balance between 1959 and 2015 AD, informing future soil Cd accumulation trajectories. The isotopic partitioning of soil Cd sources in this system was aided by a change in phosphate source rocks in 1998 AD, and a corresponding shift in fertilizer isotope composition. The dominant influence of mixing between isotopically distinct Cd end-members was confirmed by a Bayesian modeling approach. Furthermore, isotope mass balance modeling revealed that Cd removal processes most likely increased in magnitude substantially between 2000 and 2015 AD, implying an increase in Cd bioaccumulation and/or leaching over that interval. Natural-abundance stable isotopes are introduced here as a powerful tool for tracing the fate of Cd in agricultural soils, and potentially the wider environment.

Soil Organic Matter Dynamics in the Rothamsted Long-term Experiments

NASA Astrophysics Data System (ADS)

MacDonald, A.; Poulton, P.

2009-04-01

Soil science research at Rothamsted dates from 1843 when John Bennet Lawes and Joseph Henry Gilbert started the first of a series of what became long-term field experiments. The main object of these experiments was to examine the effect of inorganic and organic fertilisers and manures on crop yield and soil fertility. These "Classical Field Experiments" included studies on winter wheat (Broadbalk 1843), spring barley (Hoos Barley 1852) and permanent grassland (Park Grass 1856). Additional experiments were established in the 20th century to examine the value of ley-arable cropping, including the Highfield and Fosters Ley-arable experiments (1948) and the Woburn Ley-arable experiment (1938). More recently, the effects of incorporating organic manures and cereal straw have been examined. Early results quickly showed the benefits of inorganic N and P fertilisers on crop production, but the effects of contrasting land uses and management practices on soil properties emerged more slowly. Measurements of soil organic carbon (C) and nitrogen (N) in soils taken at intervals from the long-term experiments indicate that the rate of soil organic matter (SOM) accumulation is controlled largely by the balance between the rate of organic matter inputs and its oxidation rate, and that these are strongly influenced by land use and management, soil texture (especially clay content) and climate. A recent examination of soil organic C data from two long-term grassland experiments in the UK (including Park Grass) indicates that any changes observed in soil organic C under long-term grasslands over the past 40 years are more likely to be due to changes in land use and management rather than climate change. Data from the Rothamsted Long-term experiments have been used to develop and test biogeochemical models of C and N dynamics. In particular, the Roth-C model has successfully simulated soil C dynamics in the long-term experiments at Rothamsted and elsewhere. This model uses several organic matter pools, including decomposable and resistant plant material, soil microbial biomass, humified organic matter and inert organic matter and was one of the 31 models included in the GCTE SOMNET network. The Rothamsted Long-term Experiments together with their archived samples and data have proven especially useful for examining the impact of land use and management on soil organic matter dynamics. They continue to yield important information and are an increasingly valuable experimental resource for today's scientists. Whilst their future long-term uses cannot be predicted, provided they are well maintained, the application of new scientific techniques to examine both fresh and archived samples will continue to provide information of environmental and ecological significance to future generations. Rothamsted Research receives grant-aided support from the Biotechnology and Biological Sciences Research Council and additional support from the Lawes Agricultural Trust. Presentation of this work forms part of the ANAEE EC design study (www.anaee.com).

Enrichment of antibiotic resistance genes in soil receiving composts derived from swine manure, yard wastes, or food wastes, and evidence for multiyear persistence of swine Clostridium spp.

PubMed

Scott, Andrew; Tien, Yuan-Ching; Drury, Craig F; Reynolds, W Daniel; Topp, Edward

2018-03-01

The impact of amendment with swine manure compost (SMC), yard waste compost (YWC), or food waste compost (FWC) on the abundance of antibiotic resistance genes in soil was evaluated. Following a commercial-scale application of the composts in a field experiment, soils were sampled periodically for a decade, and archived air-dried. Soil DNA was extracted and gene targets quantified by qPCR. Compared with untreated control soil, all 3 amendment types increased the abundance of gene targets for up to 4 years postapplication. The abundance of several gene targets was much higher in soil amended with SMC than in soil receiving either YWC or FWC. The gene target ermB remained higher in the SMC treatment for a decade postapplication. Clostridia were significantly more abundant in the SMC-amended soil throughout the decade following application. Eight percent of Clostridium spp. isolates from the SMC treatment carried ermB. Overall, addition of organic amendments to soils has the potential to increase the abundance of antibiotic resistance genes. Amendments of fecal origin, such as SMC, will in addition entrain bacteria carrying antibiotic resistance genes. Environmentally recalcitrant clostridia, and the antibiotic resistance genes that they carry, will persist for many years under field conditions following the application of SMC.

Determination of Nitroaromatic, Nitramine, and Nitrate Ester Explosives in Soils Using GC-ECD

DTIC Science & Technology

1999-08-01

for supplying soils from minefields; and Dr. Paul H. Miyares, CRREL, for HPLC analysis of Fort Leonard Wood soil extracts. ii CONTENTS P reface...42 ILLUSTRATIONS Figure 1. Correlation analysis of GC-ECD concentration (mg/kg) estimates with those from HPLC -UV...kg) estimates with those from HPLC -UV analysis using splits of the same acetonitrile extract from archived soils

Long-term changes in mollisol organic carbon and nitrogen.

PubMed

David, Mark B; McIsaac, Gregory F; Darmody, Robert G; Omonode, Rex A

2009-01-01

Conversions of Mollisols from prairie to cropland and subsequent changes in crop production practices in the Midwestern USA have resulted in changes in soil organic matter. Few studies have used archived samples, long-term resampling of soils to a depth of 1 m, and space for time studies to document these changes. We resampled soils by depth (0-100 cm) in fields at 19 locations in central Illinois on poorly drained Mollisols that were in corn (Zea mays L.) and soybean (Glycine max L. Merr.) rotations, were tile drained, and had no known history of manure application in recent decades. Three fields were paired with virgin prairie remnants, two had grass borders that were sampled, and 16 had been previously sampled in 1901 to 1904 or 1957 under various land uses (virgin prairie, cultivation, grass cover). The soils had large amounts of C and N in the profile, with mean values of 175 [corrected] Mg C ha(-1) and 16.1 Mg N ha(-1) for the 18 cultivated fields sampled in 2001 and 2002. We confirmed a large reduction in organic C and total N pools from conversion of prairies to annual cultivation and artificial drainage and documented no change in these organic matter pools of cultivated soils during the period of synthetic fertilizer use (1957--2002). Cultivated fields had soil C and N concentrations typically 30 to 50% less than virgin prairie soils. Smaller but significant declines in C and N concentrations were found when comparing 1900s cultivated fields to concentrations in 2002, after another 100 yr of cultivation, and in comparing 1957 grass covered fields that had been converted to annual cultivation before 2002. The reduction in organic matter after cultivation of prairies occurred mostly in the top 50 cm of soil, with evidence of translocation of C and N from these upper layers to the 50- to 100-cm depth, possibly enhanced by tile drainage. For these Mollisols, declines in organic matter were likely completed by the 1950s, with organic matter pools in a steady state under the production practices in place from the late 1950s through 2002.

Soil pyrogenic carbon lacks long-term persistence

NASA Astrophysics Data System (ADS)

Lutfalla, Suzanne; Abiven, Samuel; Barré, Pierre; Wiedemeier, Daniel; Christensen, Bent; Houot, Sabine; Kätterer, Thomas; Macdonald, Andy; van Oort, Fok; Chenu, Claire

2015-04-01

In the context of climate change, one mitigation technique currently investigated is the use of pyrogenic organic carbon (PyOC) -which is biomass turned into charcoal- to sequester carbon in soils with the hypothesis that PyOC is persistent and will not be biodegraded (or mineralized). In this study, we use the unique opportunity offered by five long term bare fallow (LTBF) experiments across Europe (Askov in Denmark, Grignon and Versailles in France, Ultuna in Sweden and Rothamsted in the United Kingdom) to compare the dynamics of PyOC and soil organic carbon (SOC) in the same plots at the decadal time scale (from 25 to 80 years of bare fallow depending on the site). Bare fallow plots were regularly sampled throughout the bare fallow duration and these samples were carefully archived. In bare fallow plots, with negligible external carbon input and with continuing biodegradation, SOC is depleting. Using the Benzene Polycarboxylic Acid (BPCA) technique to estimate the PyOC quantity and quality in the soils at different sampling dates, we investigated if PyOC content was also decreasing and compared the rates of depletion of PyOC and SOC. We found that PyOC contents decreased rapidly in soils at all sites. The loss of PyOC between the first and the last soil sampling ranged from 19.8 to 57.3% of the initial PyOC content. Furthermore, PyOC quality exhibited a similar evolution at all sites, becoming more enriched in condensed material with time. We applied a one pool model with mono-exponential decay to our data and found an average mean residence time of native PyOC of 116 years across the different sites, with a standard deviation of 15 years, just 1.6 times longer than that of SOC. Our results show that, though having a longer residence time than total SOC, PyOC content can decrease rapidly in soils suggesting that the potential for long-term C storage in soil by PyOC amendments is less than currently anticipated. Our results therefore question the concept of biochar production as a climate change mitigation strategy.

Satellite-Derived Management Zones

NASA Technical Reports Server (NTRS)

Lepoutre, Damien; Layrol, Laurent

2005-01-01

The term "satellite-derived management zones" (SAMZ) denotes agricultural management zones that are subdivisions of large fields and that are derived from images of the fields acquired by instruments aboard Earth-orbiting satellites during approximately the past 15 years. "SAMZ" also denotes the methodology and the software that implements the methodology for creating such zones. The SAMZ approach is one of several products of continuing efforts to realize a concept of precision agriculture, which involves optimal variations in seeding, in application of chemicals, and in irrigation, plus decisions to farm or not to farm certain portions of fields, all in an effort to maximize profitability in view of spatial and temporal variations in the growth and health of crops, and in the chemical and physical conditions of soils. As used here, "management zone" signifies, more precisely, a subdivision of a field within which the crop-production behavior is regarded as homogeneous. From the perspective of precision agriculture, management zones are the smallest subdivisions between which the seeding, application of chemicals, and other management parameters are to be varied. In the SAMZ approach, the main sources of data are the archives of satellite imagery that have been collected over the years for diverse purposes. One of the main advantages afforded by the SAMZ approach is that the data in these archives can be reused for purposes of precision agriculture at low cost. De facto, these archives contain information on all sources of variability within a field, including weather, crop types, crop management, soil types, and water drainage patterns. The SAMZ methodology involves the establishment of a Web-based interface based on an algorithm that generates management zones automatically and quickly from archival satellite image data in response to requests from farmers. A farmer can make a request by either uploading data describing a field boundary to the Web site or else drawing the boundary on a reference image. Hence, a farmer can start to engage in precision farming shortly after gaining access to the Web site, without the need for incurring the high costs of conventional precision-agriculture data-collection practices that include collecting soil samples, mapping electrical conductivity of soil, and compiling multiyear crop-yield data. Given the boundary of a field, a SAMZ server computes the zones within the field in a three-stage process. In the first stage, a vector-valued image of the field is constructed by assembling, from the archives, the equivalent of a stack of the available images of the field (see figure). In the second stage, the vector-valued image is analyzed by use of a wavelet transform that detects spatial variations considered significant for precision farming while suppressing small-scale heterogeneities that are regarded as insignificant. In the third stage, a segmentation algorithm assembles the zones from smaller regions that have been identified in the wavelet analysis.

SAMZ: Satellite-Derived Management Zones

NASA Technical Reports Server (NTRS)

2004-01-01

The term "satellite-derived management zones" (SAMZ) denotes agricultural management zones that are subdivisions of large fields and that are derived from images of the fields acquired by instruments aboard Earth orbiting satellites during approximately the past 15 years. "SAMZ" also denotes the methodology and the software that implements the methodology for creating such zones. The SAMZ approach is one of several products of continuing efforts to realize a concept of precision agriculture, which involves optimal variations in seeding, in application of chemicals, and in irrigation, plus decisions to farm or not to farm certain portions of fields, all in an effort to maximize profitability in view of spatial and temporal variations in the growth and health of crops and in the chemical and physical conditions of soils. As used here, "management zone" signifies, more precisely, a subdivision of a field within which the crop production behavior is regarded as homogeneous. From the perspective of precision agriculture, management zones are the smallest subdivisions between which the seeding, application of chemicals, and other management parameters are to be varied. In the SAMZ approach, the main sources of data are the archives of satellite imagery that have been collected over the years for diverse purposes. One of the main advantages afforded by the SAMZ approach is that the data in these archives can be reused for purposes of precision agriculture at low cost. De facto, these archives contain information on all sources of variability within a field, including weather, crop types, crop management, soil types, and water drainage patterns. The SAMZ methodology involves the establishment of a Web-based interface based on an algorithm that generates management zones automatically and quickly from archival satellite image data in response to requests from farmers. A farmer can make a request by either uploading data describing a field boundary to the Web site or else drawing the boundary on a reference image. Hence, a farmer can start to engage in precision farming shortly after gaining access to the Web site, without need for incurring the high costs of conventional precision-agriculture data-collection practices that include collecting soil samples, mapping electrical conductivity of soil, and compiling multi-year crop-yield data. Given the boundary of a field, a SAMZ server computes the zones within the field in a three-stage process. In the first stage, a vector-valued image of the field is constructed by assembling, from the archives, the equivalent of a stack of the available images of the field (see figure). In the second stage, the vector-valued image is analyzed by use of a wavelet transform that detects spatial variations considered significant for precision farming while suppressing small-scale heterogeneities that are regarded as insignificant. In the third stage, a segmentation algorithm assembles the zones from smaller regions that have been identified in the wavelet analysis.

BOREAS TE-1 CH4 Flux Data Over The SSA-OA

NASA Technical Reports Server (NTRS)

Anderson, Darwin; Papagno, Andrea; Hall, Forrest G. (Editor); Newcomer, Jeffrey A. (Editor)

2000-01-01

The BOREAS TE-1 team collected various data to characterize the soil-plant systems in the BOREAS SSA. Particular emphasis was placed on nutrient biochemistry, the stores and transfers of organic carbon, and how the characteristics were related to measured methane fluxes. The overall transect in the Prince Albert National Park (Saskatchewan, Canada) included the major plant communities and related soils that occurred in that section of the boreal forest. Soil physical, chemical, and biological measurements along the transect were used to characterize the static environment, which allowed them to be related to methane fluxes. Chamber techniques were used to provide a measure of methane production/uptake. Chamber measurements coupled with flask sampling were used to determine the seasonality of methane fluxes. This particular data set contains methane flux and soil profile methane concentration values from the SSA-OA site. The data were collected from 29-May to 17-Sep-1994. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Mars Phoenix Scout Thermal Evolved Gas Analyzer (TEGA) Database: Thermal Database Development and Analysis

NASA Technical Reports Server (NTRS)

Sutter, B.; Archer, D.; Niles, P. B.; Stein, T. C.; Hamara, D.; Boynton, W. V.; Ming, D. W.

2017-01-01

The Mars Phoenix Scout Lander mission in 2008 examined the history of water, searched for organics, and evaluated the potential for past/present microbial habitability in a martian arctic ice-rich soil [1]. The Thermal Evolved Gas Analyzer (TEGA) instrument measured the isotopic composition of atmospheric CO2 and detected volatile bearing mineralogy (perchlorate, carbonate, hydrated mineral phases) in the martian soil [2-7]. The TEGA data are archived at the Planetary Data System (PDS) Geosciences Node but are reported in forms that require further processing to be of use to the non-TEGA expert. The soil and blank TEGA thermal data are reported as duty cycle and must be converted to differential power (mW) to allow for enthalpy calculations of exothermic/endothermic transitions. The exothermic/endothermic temperatures are also used to determine what phases (inorganic/organic) are present in the sample. The objectives of this work are to: 1) Describe how interpretable thermal data can be created from TEGA data sets on the PDS and 2) Provide additional thermal data interpretation of two Phoenix soils (Baby Bear, Wicked Witch) and include interpretations from three unreported soils (Rosy Red 1, 2, and Burning Coals).

Estimating Children's Soil/Dust Ingestion Rates through Retrospective Analyses of Blood Lead Biomonitoring from the Bunker Hill Superfund Site in Idaho.

PubMed

von Lindern, Ian; Spalinger, Susan; Stifelman, Marc L; Stanek, Lindsay Wichers; Bartrem, Casey

2016-09-01

Soil/dust ingestion rates are important variables in assessing children's health risks in contaminated environments. Current estimates are based largely on soil tracer methodology, which is limited by analytical uncertainty, small sample size, and short study duration. The objective was to estimate site-specific soil/dust ingestion rates through reevaluation of the lead absorption dose-response relationship using new bioavailability data from the Bunker Hill Mining and Metallurgical Complex Superfund Site (BHSS) in Idaho, USA. The U.S. Environmental Protection Agency (EPA) in vitro bioavailability methodology was applied to archived BHSS soil and dust samples. Using age-specific biokinetic slope factors, we related bioavailable lead from these sources to children's blood lead levels (BLLs) monitored during cleanup from 1988 through 2002. Quantitative regression analyses and exposure assessment guidance were used to develop candidate soil/dust source partition scenarios estimating lead intake, allowing estimation of age-specific soil/dust ingestion rates. These ingestion rate and bioavailability estimates were simultaneously applied to the U.S. EPA Integrated Exposure Uptake Biokinetic Model for Lead in Children to determine those combinations best approximating observed BLLs. Absolute soil and house dust bioavailability averaged 33% (SD ± 4%) and 28% (SD ± 6%), respectively. Estimated BHSS age-specific soil/dust ingestion rates are 86-94 mg/day for 6-month- to 2-year-old children and 51-67 mg/day for 2- to 9-year-old children. Soil/dust ingestion rate estimates for 1- to 9-year-old children at the BHSS are lower than those commonly used in human health risk assessment. A substantial component of children's exposure comes from sources beyond the immediate home environment. von Lindern I, Spalinger S, Stifelman ML, Stanek LW, Bartrem C. 2016. Estimating children's soil/dust ingestion rates through retrospective analyses of blood lead biomonitoring from the Bunker Hill Superfund Site in Idaho. Environ Health Perspect 124:1462-1470; http://dx.doi.org/10.1289/ehp.1510144.

Predicting the Soil Phosphorus Dynamics of the Ploughed Layer Under Continuous Cultivation and P Fertilization

NASA Astrophysics Data System (ADS)

Morel, C.; Augusto, L.; Gallet-Budynek, A. S.

2011-12-01

One major component of the biogeochemical cycling of phosphorus (P) in soils is the plant-available soil P. Its sound management, to minimize the loss of soil P to surface waters while ensuring enough P to sustain soil fertility, requires being able to predict the long term dynamics of plant-available soil P with the P budget. We examined the ability of a simple model to predict the change in plant-available soil P of the ploughed layer for almost 3 decades of continuous cultivation and P fertilization. We used a process-based assessment of plant-availability that considers both the concentration (Cp) of phosphate ions (Pi) in solution and the time-dependent amount (Pr) of Pi bound to the soil solid phase that can diffuse towards solution that equilibrates with time Pi in solution under the effect of a gradient of concentration. Soil analyses were performed in batch experiment on soil suspensions using a 32Pi-dilution method at steady-state. The modeling considered the difference between P inputs minus P outputs. This annual P budget was partitioned between Cp and Pr for one year. Every year the P budget was calculated as the added P to soil minus the P removed in grain yields and the P that leaves the plough layer by leaching estimated as the simulated Cp value multiplied by the annual volume of drainage water. Other fluxes that can play a role in P cycling such as atmospheric deposit, preferential, subsurface and surface flows were neglected. We analyzed archived soil samples, taken up every 3-4 years from a long-term field experiment (1972-2000) on a sandy soil under temperate climate. It comprised 4 replicates and 3 annual rates of P application as commercial superphosphate: 0, 44 and 96 kg Pha-1 yr-1. The crop was a monoculture of irrigated-maize. Grain yields and their P content were determined every year for all plots. The overall corn grain yield over almost 3 decades was: 11.6 t ha-1 yr-1 (mean P content of grain = 3.0 g P kg¬-1). The starting Cp value in 1972 was 1.31 mg P L. At the end of the experiment, the measured Cp values ranged from 0.44 to 3.86 mg P L-1 due to the cumulative P budget which varied between -825 to +1400 kg-1 ha-1 including the calculated leached P beyond the plough layer (from -129 to -384 kg P ha-1). Experimental Pr values vs. Cp and time were highly and closely (r2=0.94; n=108) fitted by a single kinetic Freundlich equation, irrespective of the year of sampling. This equation was used to calculate Pr value after one year. To test the predictive capability of the model, we compared the simulated Cp values by the model to the field-observed Cp values. The model reproduced the most important patterns of the fate of soil P for the different P fertilization treatments. Simulated Cp values were not significantly different from the field-observed Cp values for the 0 and 44 kg P ha-1 yr-1 treatments, but some discrepancies were observed for the 96 kg P ha-1 yr-1 treatment. The next step in the generalization of our results would be to test the model performance in other field conditions. This investigation highlights the importance of long-term field experiments with archived soil samples and complete database on plant biomass for understanding P cycling and soil P dynamics.

Brominated flame retardants in U.S. biosolids from the EPA national sewage sludge survey and chemical persistence in outdoor soil mesocosms

PubMed Central

Venkatesan, Arjun K.; Halden, Rolf U.

2014-01-01

We determined national baseline levels and release inventories of 77 traditional and novel brominated flame retardants (BFRs) in biosolids composites (prepared from 110 samples) from the U.S. Environmental Protection Agency’s 2001 national sewage sludge survey (NSSS). Additionally, analyses were performed on archived samples from a 3-year outdoor mesocosm study to determine the environmental persistence of BFRs in biosolids-amended soil. The total polybrominated diphenylether (PBDE) concentration detected in biosolids composites was 9,400±960 μg/kg dry weight, of which deca-BDE constituted 57% followed by nona- and penta-BDE at 18 and 13%, respectively. The annual mean loading rate estimated from the detected concentrations and approximate annual biosolids production and disposal numbers in the U.S., of the sum of PBDEs and non-BDE BFRs was calculated to be 47,900–60,100 and 12,900–16,200 kg/year, of which 24,000–36,000 and 6,400–9,700 kg/year are applied on land, respectively. Mean concentration of PBDEs were higher in the 2001 samples compared to levels reported in EPA’s 2006/7 Targeted NSSS, reflecting on-going efforts in phasing-out PBDEs in the U.S. In outdoor soil mesocosms, >99% of the initial BFRs mass in the biosolids/soil mixtures (1:2) persisted over the monitoring duration of three years. Estimates of environmental releases may be refined in the future by analyzing individual rather than composited samples, and by integrating currently unavailable data on disposal of biosolids on a plant-specific basis. This study informs the risk assessment of BFRs by furnishing national inventories of BFR occurrence and environmental release via biosolids application on land. PMID:24607311

PRESENTATION TYPE: Round Table Discussion (80 minutes) TITLE: Unlocking the ‘Omics Archive: Enabling Toxicogenomic/Proteomic Investigation from Archival Samples

EPA Science Inventory

Formalin fixation and paraffin embedding (FFPE) is a cross-industry gold standard for preparing nonclinical and clinical samples for histopathological assessment which preserves tissue architecture and enables storage of tissue in archival banks. These archival banks are an untap...

Appearance of β-lactam Resistance Genes in Agricultural Soils and Clinical Isolates over the 20th Century

NASA Astrophysics Data System (ADS)

Graham, David W.; Knapp, Charles W.; Christensen, Bent T.; McCluskey, Seánín; Dolfing, Jan

2016-02-01

Debate exists about whether agricultural versus medical antibiotic use drives increasing antibiotic resistance (AR) across nature. Both sectors have been inconsistent at antibiotic stewardship, but it is unclear which sector has most influenced acquired AR on broad scales. Using qPCR and soils archived since 1923 at Askov Experimental Station in Denmark, we quantified four broad-spectrum β-lactam AR genes (ARG; blaTEM, blaSHV, blaOXA and blaCTX-M) and class-1 integron genes (int1) in soils from manured (M) versus inorganic fertilised (IF) fields. “Total” β-lactam ARG levels were significantly higher in M versus IF in soils post-1940 (paired-t test; p < 0.001). However, dominant individual ARGs varied over time; blaTEM and blaSHV between 1963 and 1974, blaOXA slightly later, and blaCTX-M since 1988. These dates roughly parallel first reporting of these genes in clinical isolates, suggesting ARGs in animal manure and humans are historically interconnected. Archive data further show when non-therapeutic antibiotic use was banned in Denmark, blaCTX-M levels declined in M soils, suggesting accumulated soil ARGs can be reduced by prudent antibiotic stewardship. Conversely, int1 levels have continued to increase in M soils since 1990, implying direct manure application to soils should be scrutinized as part of future stewardship programs.

Remote Sensing Monitoring of Changes in Soil Salinity: A Case Study in Inner Mongolia, China.

PubMed

Wu, Jingwei; Vincent, Bernard; Yang, Jinzhong; Bouarfa, Sami; Vidal, Alain

2008-11-07

This study used archived remote sensing images to depict the history of changes in soil salinity in the Hetao Irrigation District in Inner Mongolia, China, with the purpose of linking these changes with land and water management practices and to draw lessons for salinity control. Most data came from LANDSAT satellite images taken in 1973, 1977, 1988, 1991, 1996, 2001, and 2006. In these years salt-affected areas were detected using a normal supervised classification method. Corresponding cropped areas were detected from NVDI (Normalized Difference Vegetation Index) values using an unsupervised method. Field samples and agricultural statistics were used to estimate the accuracy of the classification. Historical data concerning irrigation/drainage and the groundwater table were used to analyze the relation between changes in soil salinity and land and water management practices. Results showed that: (1) the overall accuracy of remote sensing in detecting soil salinity was 90.2%, and in detecting cropped area, 98%; (2) the installation/innovation of the drainage system did help to control salinity; and (3) a low ratio of cropped land helped control salinity in the Hetao Irrigation District. These findings suggest that remote sensing is a useful tool to detect soil salinity and has potential in evaluating and improving land and water management practices.

Summary of the 1987 soil sampling effort at the Idaho National Engineering Laboratory Test Reactor Area Paint Shop Ditch

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wood, T.R.; Knight, J.L.; Hertzler, C.L.

1989-08-01

Sampling of the Test Reactor Area (TRA) Paint Shop Ditch at the Idaho National Engineering Laboratory was initiated in compliance with the Interim Agreement between the Department of Energy (DOE) and the Environmental Protection Agency (EPA). Sampling of the TRA Paint Shop Ditch was done as part of the Action Plan to achieve and maintain compliance with the Resource Conservation and Recovery Act (RCRA) and applicable regulations. It is the purpose of this document to provide a summary of the July 6, 1987 sampling activities that occurred in ditch west of Building TRA-662, which housed the TRA Paint Shop inmore » 1987. This report will give a narrative description of the field activities, locations of collected samples, discuss the sampling procedures and the chemical analyses. Also included in the scope of this report is to bring together data and reports on the TRA Paint Shop Ditch for archival purposes. 6 refs., 10 figs., 8 tabs.« less

Lipid-based palaeotemperature reconstruction in lakes: New insights on the applicability of branched GDGTs in lacustrine sedimentary archives

NASA Astrophysics Data System (ADS)

Weber, Yuki; De Jonge, Cindy; Hopmans, Ellen C.; Sinninghe Damsté, Jaap S.; Gilli, Adrian; Lehmann, Moritz F.; Niemann, Helge

2014-05-01

Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are bacterial membrane lipids that occur ubiquitously in soils worldwide. The relative abundances of nine structurally related brGDGTs (used in the MBT and CBT indices) have been shown to correlate with mean annual air temperature (MAAT) and soil pH, making them potential proxies in sediments that receive soil organic matter from terrestrial environments. The brGDGT distributions in lake deposits, however, mostly follow a different correlation with air temperature and (to a minor extent) lake water pH. This points to a substantial contribution of brGDGTs from in situ production within the lake water column and/or -sediments. It is also quite likely that the fractions of soil- and lake-derived brGDGTs vary considerably between sampling sites and with time, due to spatial and temporal changes in sediment input rates. Paleoclimate reconstructions using lacustrine brGDGT records thus remain challenging, especially because little is known about the environmental variables that control bacterial brGDGT production within aquatic environments. In order to decipher the impact of in situ production, we compared the brGDGT composition of surface sediments and corresponding catchment soils of 35 lakes from the Swiss alpine region, spanning an altitudinal gradient from 200 - 2000 m above mean sea level. We used an improved HPLC method to additionally quantify six recently discovered isomers, which vary in the position of their methyl branches. These 6-methyl compounds previously co-eluted with those brGDGTs used to calculate the MBT and CBT indices, obscuring any paleoenvironmental information they potentially yield. A principal component analysis suggests that the fractional abundances of the 6-methyl brGDGTs are primarily controlled by the surface water pH of the lakes. Notably, and in contrast to soils, the fractional abundance of the 5-methyl pentamethylated brGDGT in lake sediments does not show a correlation with MAAT (derived from the lapse rate model), possibly pointing to different source organisms in soils and lakes. Our results imply that in situ production of brGDGTs plays a mayor role. By further constraining the environmental controls on lake-derived brGDGTs, we aim to improve the future applicability of brGDGT-based proxies in lacustrine climate archives.

A gradient of radioactive contamination in Dolon village near the SNTS and comparison of computed dose values with instrumental estimates for the 29 August, 1949 nuclear test.

PubMed

Stepanenko, Valeriy F; Hoshi, Masaharu; Dubasov, Yuriy V; Sakaguchi, Aya; Yamamoto, Masayoshi; Orlov, Mark Y; Bailiff, Ian K; Ivannikov, Alexander I; Skvortsov, Valeriy G; Iaskova, Elena K; Kryukova, Irina G; Zhumadilov, Kassym S; Endo, Satoru; Tanaka, Kenichi; Apsalikov, Kazbek N; Gusev, Boris I

2006-02-01

Spatial distributions of soil contamination by 137Cs (89 sampling points) and 239+240Pu (76 points) near and within Dolon village were analyzed. An essential exponential decrease of contamination was found in Dolon village: the distance of a half reduction in contamination is about 0.87-1.25 km (in a northwest-southeast direction from the supposed centerline of the radioactive trace). This fact is in agreement with the available exposure rate measurements near Dolon (September 1949 archive data): on the basis of a few measurements the pattern of the trace was estimated to comprise a narrow 2 km corridor of maximum exposure rate. To compare computed external doses in air with local dose estimates by retrospective luminescence dosimetry (RLD) the gradient of radioactive soil contamination within the village was accounted for. The computed dose associated with the central axis of the trace was found to be equal to 2260 mGy (calculations based on archive exposure rate data). Local doses near the RLD sampling points (southeast of the village) were calculated to be in the range 466-780 mGy (averaged value: 645+/-70 mGy), which is comparable with RLD data (averaged value 460+/-92 mGy with range 380-618 mGy). A comparison of the computed mean dose in the settlement with dose estimates by ESR tooth enamel dosimetry makes it possible to estimate the "upper level" of the "shielding and behavior" factor in dose reduction for inhabitants of Dolon village which was found to be 0.28+/-0.068.

Estimating Children’s Soil/Dust Ingestion Rates through Retrospective Analyses of Blood Lead Biomonitoring from the Bunker Hill Superfund Site in Idaho

PubMed Central

von Lindern, Ian; Spalinger, Susan; Stifelman, Marc L.; Stanek, Lindsay Wichers; Bartrem, Casey

2016-01-01

Background: Soil/dust ingestion rates are important variables in assessing children’s health risks in contaminated environments. Current estimates are based largely on soil tracer methodology, which is limited by analytical uncertainty, small sample size, and short study duration. Objectives: The objective was to estimate site-specific soil/dust ingestion rates through reevaluation of the lead absorption dose–response relationship using new bioavailability data from the Bunker Hill Mining and Metallurgical Complex Superfund Site (BHSS) in Idaho, USA. Methods: The U.S. Environmental Protection Agency (EPA) in vitro bioavailability methodology was applied to archived BHSS soil and dust samples. Using age-specific biokinetic slope factors, we related bioavailable lead from these sources to children’s blood lead levels (BLLs) monitored during cleanup from 1988 through 2002. Quantitative regression analyses and exposure assessment guidance were used to develop candidate soil/dust source partition scenarios estimating lead intake, allowing estimation of age-specific soil/dust ingestion rates. These ingestion rate and bioavailability estimates were simultaneously applied to the U.S. EPA Integrated Exposure Uptake Biokinetic Model for Lead in Children to determine those combinations best approximating observed BLLs. Results: Absolute soil and house dust bioavailability averaged 33% (SD ± 4%) and 28% (SD ± 6%), respectively. Estimated BHSS age-specific soil/dust ingestion rates are 86–94 mg/day for 6-month- to 2-year-old children and 51–67 mg/day for 2- to 9-year-old children. Conclusions: Soil/dust ingestion rate estimates for 1- to 9-year-old children at the BHSS are lower than those commonly used in human health risk assessment. A substantial component of children’s exposure comes from sources beyond the immediate home environment. Citation: von Lindern I, Spalinger S, Stifelman ML, Stanek LW, Bartrem C. 2016. Estimating children’s soil/dust ingestion rates through retrospective analyses of blood lead biomonitoring from the Bunker Hill Superfund Site in Idaho. Environ Health Perspect 124:1462–1470; http://dx.doi.org/10.1289/ehp.1510144 PMID:26745545

PCB Analysis Plan for Tank Archive Samples

DOE Office of Scientific and Technical Information (OSTI.GOV)

NGUYEN, D.M.

2001-03-22

This analysis plan specifies laboratory analysis, quality assurance/quality control (QA/QC), and data reporting requirements for analyzing polychlorinated biphenyls (PCB) concentrations in archive samples. Tank waste archive samples that are planned for PCB analysis are identified in Nguyen 2001. The tanks and samples are summarized in Table 1-1. The analytical data will be used to establish a PCB baseline inventory in Hanford tanks.

Soil archives of a Fluvisol: subsurface analysis and soil history of the medieval city centre of Vlaardingen, the Netherlands - an integral approach

NASA Astrophysics Data System (ADS)

Kluiving, Sjoerd; de Ridder, Tim; van Dasselaar, Marcel; Roozen, Stan; Prins, Maarten

2016-06-01

The medieval city of Vlaardingen (the Netherlands) was strategically located on the confluence of three rivers, the Maas, the Merwede, and the Vlaarding. A church of the early 8th century AD was already located here. In a short period of time, Vlaardingen developed in the 11th century AD into an international trading place and into one of the most important places in the former county of Holland. Starting from the 11th century AD, the river Maas repeatedly threatened to flood the settlement. The flood dynamics were registered in Fluvisol archives and were recognised in a multidisciplinary sedimentary analysis of these archives. To secure the future of these vulnerable soil archives an extensive interdisciplinary research effort (76 mechanical drill holes, grain size analysis (GSA), thermo-gravimetric analysis (TGA), archaeological remains, soil analysis, dating methods, micromorphology, and microfauna) started in 2011 to gain knowledge on the sedimentological and pedological subsurface of the settlement mound as well as on the well-preserved nature of the archaeological evidence. Pedogenic features are recorded with soil description, micromorphological, and geochemical (XRF - X-ray fluorescence) analysis. The soil sequence of 5 m thickness exhibits a complex mix of "natural" as well as "anthropogenic" layering and initial soil formation that enables us to make a distinction between relatively stable periods and periods with active sedimentation. In this paper the results of this interdisciplinary project are demonstrated in a number of cross-sections with interrelated geological, pedological, and archaeological stratification. A distinction between natural and anthropogenic layering is made on the basis of the occurrence of the chemical elements phosphor and potassium. A series of four stratigraphic and sedimentary units record the period before and after the flooding disaster. Given the many archaeological remnants and features present in the lower units, in geological terms it is assumed that the medieval landscape was submerged while it was inhabited in the 12th century AD. In reaction to a final submersion phase in the late 12th century AD, the inhabitants started to raise the surface of the settlement. Within archaeological terms the boundary between natural and anthropogenic layers is stratigraphically lower, so that in the interpretation of archaeologists, the living ground was dry during the 12th and the 13th centuries AD. In this discussion, the geological interpretation will be compared with alternative archaeological scenarios.

BOREAS TE-1 CO2 and CH4 Flux Data Over the SSA-OBS Site

NASA Technical Reports Server (NTRS)

Anderson, Darwin; Papagno, Andrea; Hall, Forrest G. (Editor); Newcomer, Jeffrey A. (Editor)

2000-01-01

The BOREAS TE-1 team collected various data to characterize the soil-plant systems in the BOREAS SSA. Particular emphasis was placed on nutrient biochemistry, the stores and transfers of organic carbon, and how the characteristics were related to measured methane fluxes. The overall transect in the Prince Albert National Park (Saskatchewan, Canada) included the major plant communities and related soils that occurred in that section of the boreal forest. Soil physical, chemical, and biological measurements along the transect were used to characterize the static environment, which allowed them to be related to methane fluxes. Chamber techniques were used to provide a measure of methane production/uptake. Chamber measurements coupled with flask sampling were used to determine the seasonality of methane fluxes. This particular data set contains carbon dioxide and methane flux values from the SSA-OBS site. The data were collected from 09-Jun to 04-Sep-1994. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Alaska Geochemical Database (AGDB)-Geochemical data for rock, sediment, soil, mineral, and concentrate sample media

USGS Publications Warehouse

Granitto, Matthew; Bailey, Elizabeth A.; Schmidt, Jeanine M.; Shew, Nora B.; Gamble, Bruce M.; Labay, Keith A.

2011-01-01

The Alaska Geochemical Database (AGDB) was created and designed to compile and integrate geochemical data from Alaska in order to facilitate geologic mapping, petrologic studies, mineral resource assessments, definition of geochemical baseline values and statistics, environmental impact assessments, and studies in medical geology. This Microsoft Access database serves as a data archive in support of present and future Alaskan geologic and geochemical projects, and contains data tables describing historical and new quantitative and qualitative geochemical analyses. The analytical results were determined by 85 laboratory and field analytical methods on 264,095 rock, sediment, soil, mineral and heavy-mineral concentrate samples. Most samples were collected by U.S. Geological Survey (USGS) personnel and analyzed in USGS laboratories or, under contracts, in commercial analytical laboratories. These data represent analyses of samples collected as part of various USGS programs and projects from 1962 to 2009. In addition, mineralogical data from 18,138 nonmagnetic heavy mineral concentrate samples are included in this database. The AGDB includes historical geochemical data originally archived in the USGS Rock Analysis Storage System (RASS) database, used from the mid-1960s through the late 1980s and the USGS PLUTO database used from the mid-1970s through the mid-1990s. All of these data are currently maintained in the Oracle-based National Geochemical Database (NGDB). Retrievals from the NGDB were used to generate most of the AGDB data set. These data were checked for accuracy regarding sample location, sample media type, and analytical methods used. This arduous process of reviewing, verifying and, where necessary, editing all USGS geochemical data resulted in a significantly improved Alaska geochemical dataset. USGS data that were not previously in the NGDB because the data predate the earliest USGS geochemical databases, or were once excluded for programmatic reasons, are included here in the AGDB and will be added to the NGDB. The AGDB data provided here are the most accurate and complete to date, and should be useful for a wide variety of geochemical studies. The AGDB data provided in the linked database may be updated or changed periodically. The data on the DVD and in the data downloads provided with this report are current as of date of publication.

Long-term changes in the extractability and bioavailability of zinc and cadmium after sludge application

DOE Office of Scientific and Technical Information (OSTI.GOV)

McGrath, S.P.; Zhao, F.J.; Dunham, S.J.

2000-06-01

Changes in the extractability and uptake by crops of sludge metals in a long-term field experiment, started in 1942, were measured to assess whether Zn and Cd are either fixed by the sludge/soil constituents or are released as the sludge organic matter (OM) decomposes. Total and 0.1 M CaCl{sub 2}-extractable concentrations of Zn and Cd in soil and total concentrations in crops were measured on archived crop and soil samples. Extractability of Zn as a proportion of the total ranged from 0.5 to 3% and that of Cd from 4 to 18%, and were higher in sludge-amended than farmyard manuremore » or fertilizer-amended soils. Over a 23-yr period after 1961, when sludge was last applied, the extractability of both metals fluctuated, but neither decreased nor increased consistently. The relationships between total soil and crop metal concentrations were linear, with no evidence of a plateau across the range of soil metal concentrations achieved. The slopes of the soil-plant relationships depended on the type of crop or crop part examined, but were generally in the order red beet (Beta vulgaris L.) > sugar beet (Beta vulgaris L.) > carrot (Daucus carota L.) > barley (Hordeum vulgare L.). However, there also were large seasonal differences in metal concentrations in the crops. It is concluded from the available evidence that up to 23 yr after sludge applications cease, Zn and Cd extractability and bioavailability do not decrease.« less

Rapid Turnover and Minimal Accretion of Mineral Soil Carbon During 60-Years of Pine Forest Growth on Previously Cultivated Land

NASA Astrophysics Data System (ADS)

Richter, D., Jr.; Mobley, M. L.; Billings, S. A.; Markewitz, D.

2016-12-01

At the Calhoun Long-Term Soil-Ecosystem field experiment (1957-present), reforestation of previously cultivated land over fifty years nearly doubled soil organic carbon (SOC) in surface soils (0 to 7.5-cm) but these gains were offset by significant SOC losses in subsoils (35 to 60-cm). Nearly all of the accretions in surface soils amounted to gains in light fraction SOC, whereas losses at depth were associated with silt and clay-sized particles. These changes are documented in the Calhoun Long-Term Soil-Ecosystem (LTSE) study that resampled soil from 16 plots about every five years and archived all soil samples from four soil layers within the upper 60-cm of mineral soil. We combined soil bulk density, density fractionation, stable isotopes, and radioisotopes to explore changes in SOC and soil organic nitrogen (SON) associated with five decades of the growth of a loblolly pine secondary forest. Isotopic signatures showed relatively large accumulations of contemporary forest-derived carbon in surface soils, and no accumulation of forest-derived carbon in subsoils. We interpret results to indicate that land-use change from cotton fields to secondary pine forests drove soil biogeochemical and hydrological changes that enhanced root and microbial activity and SOM decomposition in subsoils. As pine stands matured and are now transitioning to mixed pines and hardwoods, demands on soil organic matter for nutrients to support aboveground growth has eased due to pine mortality, and bulk SOM and SON and their isotopes in subsoils have stabilized. We anticipate major changes in the next fifty years as 1957 pine trees transition to hardwoods. This study emphasizes the importance of long-term experiments and deep soil measurements when characterizing SOC and SON responses to land use change. There is a remarkable paucity of E long-term soil data deeper than 30 cm.

Influence of Matrix Composition on the Bioaccessibility of Copper, Zinc and Nickel in Urban Residential Dust and Soil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rasmussen,P.; Beauchemin, S.; Nugent, M.

2008-01-01

This study examines factors affecting oral bioaccessibility of metals in household dust, in particular metal speciation, organic carbon content, and particle size, with the goal of addressing risk assessment information requirements. Investigation of copper (Cu) and zinc (Zn) speciation in two size fractions of dust (< 36 {mu} m and 80-150 {mu} m) using synchrotron X-ray absorption spectroscopy (XAS) indicates that the two metals are bound to different components of the dust: Cu is predominately associated with the organic phase of the dust, while Zn is predominately associated with the mineral fraction. Total and bioaccessible Cu, nickel (Ni), and Znmore » were determined (on dry weight basis) in the < 150 {mu} m size fraction of a set of archived indoor dust samples (n = 63) and corresponding garden soil samples (n = 66) from the City of Ottawa, Canada. The median bioaccessible Cu content is 66 {mu} g g-1 in dust compared to 5 {mu} g g-1 in soil; the median bioaccessible Ni content is 16 {mu} g g-1 in dust compared to 2 {mu} g g-1 in soil; and the median bioaccessible Zn content is 410 {mu} g g-1 in dust compared to 18 {mu} g g-1 in soil. For the same data set, the median total Cu content is 152 {mu} g g-1 in dust compared to 17 {mu} g g-1 in soil; the median total Ni content is 41 {mu} g g-1 in dust compared to 13 {mu} g g-1 in soil; and the median total Zn content is 626 {mu} g g-1 in dust compared to 84 {mu} g g-1 in soil. Organic carbon is elevated in indoor dust (median 28%) compared to soil (median 5%), and is a key factor controlling metal partitioning and therefore bioaccessibility. The results show that house dust and soil have distinct geochemical signatures and should not be treated as identical media in exposure and risk assessments. Separate measurements of the indoor and outdoor environment are essential to improve the accuracy of residential risk assessments.« less

Recovery and archiving key Arctic Alaska vegetation map and plot data for the Arctic-Boreal Vulnerability Field Experiment (ABoVE)

NASA Astrophysics Data System (ADS)

Walker, D. A.; Breen, A. L.; Broderson, D.; Epstein, H. E.; Fisher, W.; Grunblatt, J.; Heinrichs, T.; Raynolds, M. K.; Walker, M. D.; Wirth, L.

2013-12-01

Abundant ground-based information will be needed to inform remote-sensing and modeling studies of NASA's Arctic-Boreal Vulnerability Experiment (ABoVE). A large body of plot and map data collected by the Alaska Geobotany Center (AGC) and collaborators from the Arctic regions of Alaska and the circumpolar Arctic over the past several decades is being archived and made accessible to scientists and the public via the Geographic Information Network of Alaska's (GINA's) 'Catalog' display and portal system. We are building two main types of data archives: Vegetation Plot Archive: For the plot information we use a Turboveg database to construct the Alaska portion of the international Arctic Vegetation Archive (AVA) http://www.geobotany.uaf.edu/ava/. High quality plot data and non-digital legacy datasets in danger of being lost have highest priority for entry into the archive. A key aspect of the database is the PanArctic Species List (PASL-1), developed specifically for the AVA to provide a standard of species nomenclature for the entire Arctic biome. A wide variety of reports, documents, and ancillary data are linked to each plot's geographic location. Geoecological Map Archive: This database includes maps and remote sensing products and links to other relevant data associated with the maps, mainly those produced by the Alaska Geobotany Center. Map data include GIS shape files of vegetation, land-cover, soils, landforms and other categorical variables and digital raster data of elevation, multispectral satellite-derived data, and data products and metadata associated with these. The map archive will contain all the information that is currently in the hierarchical Toolik-Arctic Geobotanical Atlas (T-AGA) in Alaska http://www.arcticatlas.org, plus several additions that are in the process of development and will be combined with GINA's already substantial holdings of spatial data from northern Alaska. The Geoecological Atlas Portal uses GINA's Catalog tool to develop a web interface to view and access the plot and map data. The mapping portal allows visualization of GIS data, sample-point locations and imagery and access to the map data. Catalog facilitates the discovery and dissemination of science-based information products in support of analysis and decision-making concerned with development and climate change and is currently used by GINA in several similar archive/distribution portals.

Dose-Response Analysis of RNA-Seq Profiles in Archival ...

EPA Pesticide Factsheets

Use of archival resources has been limited to date by inconsistent methods for genomic profiling of degraded RNA from formalin-fixed paraffin-embedded (FFPE) samples. RNA-sequencing offers a promising way to address this problem. Here we evaluated transcriptomic dose responses using RNA-sequencing in paired FFPE and frozen (FROZ) samples from two archival studies in mice, one 20 years old. Experimental treatments included 3 different doses of di(2-ethylhexyl)phthalate or dichloroacetic acid for the recently archived and older studies, respectively. Total RNA was ribo-depleted and sequenced using the Illumina HiSeq platform. In the recently archived study, FFPE samples had 35% lower total counts compared to FROZ samples but high concordance in fold-change values of differentially expressed genes (DEGs) (r2 = 0.99), highly enriched pathways (90% overlap with FROZ), and benchmark dose estimates for preselected target genes (2% difference vs FROZ). In contrast, older FFPE samples had markedly lower total counts (3% of FROZ) and poor concordance in global DEGs and pathways. However, counts from FFPE and FROZ samples still positively correlated (r2 = 0.84 across all transcripts) and showed comparable dose responses for more highly expressed target genes. These findings highlight potential applications and issues in using RNA-sequencing data from FFPE samples. Recently archived FFPE samples were highly similar to FROZ samples in sequencing q

BOREAS TE-5 Soil Respiration Data

NASA Technical Reports Server (NTRS)

Hall, Forrest G. (Editor); Curd, Shelaine (Editor); Ehleriinger, Jim; Brooks, J. Renee; Flanagan, Larry

2000-01-01

The BOREAS TE-5 team collected measurements in the NSA and SSA on gas exchange, gas composition, and tree growth. Soil respiration data were collected from 26-May-94 to 07-Sep-94 in the BOREAS NSA and SSA to compare the soil respiration rates in different forest sites using a LI-COR 6200 soil respiration chamber (model 6299). The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distrobuted Activity Archive Center (DAAC).

Drilling on the Moon and Mars: Developing the Science Approach for Subsurface Exploration with Human Crews

NASA Technical Reports Server (NTRS)

Stoker, C. R.; Zavaleta, J.; Bell, M.; Direto, S.; Foing, B.; Blake, D.; Kim, S.

2010-01-01

DOMEX (Drilling on the Moon and Mars in Human Exploration) is using analog missions to develop the approach for using human crews to perform science activities on the Moon and Mars involving exploration and sampling of the subsurface. Subsurface science is an important activity that may be uniquely enabled by human crews. DOMEX provides an opportunity to plan and execute planetary mission science activities without the expense and overhead of a planetary mission. Objectives: The objective of this first in a series of DOMEX missions were to 1) explore the regional area to understand the geologic context and determine stratigraphy and geologic history of various geologic units in the area. 2) Explore for and characterize sites for deploying a deep (10 m depth) drilling system in a subsequent field season. 3) Perform GPR on candidate drill sites. 4) Select sites that represent different geological units deposited in different epochs and collect soil cores using sterile procedures for mineralogical, organic and biological analysis. 5) Operate the MUM in 3 different sites representing different geological units and soil characteristics. 6) Collect rock and soil samples of sites visited and analyze them at the habitat. Results: At mission start the crew performed a regional survey to identify major geologic units that were correlated to recognized stratigraphy and regional geologic maps. Several candidate drill sites were identified. During the rest of the mission, successful GPR surveys were conducted in four locations. Soil cores were collected in 5 locations representing soils from 4 different geologic units, to depths up to 1m. Soil cores from two locations were analyzed with PCR in the laboratory. The remainder were reserved for subsequent analysis. XRD analysis was performed in the habitat and in the field on 39 samples, to assist with sample characterization, conservation, and archiving. MUM was deployed at 3 field locations and 1 test location (outside the habitat) where it operated autonomously for 2-4 hours at each site. Depths achieved ranged from 15 to 70 cm depending on the soil compressive strength and the presence and depth of subsurface indurated layers. Subsurface samples weighing 0.5 to 1 g were collected at the deepest depth encountered at each of the sites using the MUM automated sample collection system, and subsequently analyzed with XRD. Downhole inspection of holes produced by MUM with the Raman spectrometer was acquired on two of the holes and spectral features associated with selenite were identified in specific soil layers. Previously unreported fossilized remains of vertebrate fauna from the Jurassic era were discovered during our mission. Analysis of mineral biomarkers associated with this discovery are underway.

Water-Chemistry Evolution and Modeling of Radionuclide Sorption and Cation Exchange during Inundation of Frenchman Flat Playa

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hershey, Ronald; Cablk, Mary; LeFebre, Karen

2013-08-01

Atmospheric tests and other experiments with nuclear materials were conducted on the Frenchman Flat playa at the Nevada National Security Site, Nye County, Nevada; residual radionuclides are known to exist in Frenchman Flat playa soils. Although the playa is typically dry, extended periods of winter precipitation or large single-event rainstorms can inundate the playa. When Frenchman Flat playa is inundated, residual radionuclides on the typically dry playa surface may become submerged, allowing water-soil interactions that could provide a mechanism for transport of radionuclides away from known areas of contamination. The potential for radionuclide transport by occasional inundation of the Frenchmanmore » Flat playa was examined using geographic information systems and satellite imagery to delineate the timing and areal extent of inundation; collecting water samples during inundation and analyzing them for chemical and isotopic content; characterizing suspended/precipitated materials and archived soil samples; modeling water-soil geochemical reactions; and modeling the mobility of select radionuclides under aqueous conditions. The physical transport of radionuclides by water was not evaluated in this study. Frenchman Flat playa was inundated with precipitation during two consecutive winters in 2009-2010 and 2010-2011. Inundation allowed for collection of multiple water samples through time as the areal extent of inundation changed and ultimately receded. During these two winters, precipitation records from a weather station in Frenchman Flat (Well 5b) provided information that was used in combination with geographic information systems, Landsat imagery, and image processing techniques to identify and quantify the areal extent of inundation. After inundation, water on the playa disappeared quickly, for example, between January 25, 2011 and February 10, 2011, a period of 16 days, 92 percent of the areal extent of inundation receded (2,062,800 m2). Water sampling provided valuable information about chemical processes occurring during inundation as the water disappeared. Important observations from water-chemistry analyses included: 1) total dissolved solids (TDS) and chloride ion (Cl-) concentrations were very low (TDS: < 200 mg/L and Cl-: < 3.0 mg/L, respectively) for all water samples regardless of time or areal extent; 2) all dissolved constituents were at concentrations well below what might be expected for evaporating shallow surface waters on a playa, even when 98 to 99 percent of the water had disappeared; 3) the amount of evaporation for the last water samples collected at the end of inundation, estimated with the stable isotopic ratios δ2H or δ18O, was approximately 60 percent; and 4) water samples analyzed by gamma spectroscopy did not show any man-made radioactivity; however, the short scanning time (24 hours) and relative chemical diluteness of the water samples (TDS ranged between 39 and 190 mg/L) may have contributed to none being detected. Additionally, any low-energy beta emitting radionuclides would not have been detected by gamma spectroscopy. From these observations, it was apparent that a significant portion of water on the playa did not evaporate, but rather infiltrated into the subsurface (approximately 40 percent). Consistent with this water chemistry-based conclusion is particle-size analysis of two archived Frenchman Flat playa soils samples, which showed low clay content in the near surface soil that also suggested infiltration. Infiltration of water from the playa during inundation into the subsurface does not necessarily imply that groundwater recharge is occurring, but it does provide a mechanism for moving residual radionuclides downward into the subsurface of Frenchman Flat playa. Water-mineral geochemical reactions were modeled so that changes in the water chemistry could be identified and the extent of reactions quantified. Geochemical modeling showed that evaporation; equilibrium with atmospheric carbon dioxide and calcite; dissolution of sodium chloride, gypsum, and composite volcanic glass; and precipitation of composite clay and quartz represented changes in water as it disappeared from the playa. This modeling provided an understanding of the water-soil geochemical environment, which was then used to evaluate the potential mobility of residual radionuclides into the playa soils by water. Because there is no information on the chemical forms of anthropogenic radionuclides in Frenchman Flat playa soil, it was assumed that soil radionuclides go into solution when the playa is inundated. In mobility modeling, a select group of radionuclides were allowed to sorb onto, or exchange with, playa soil minerals to evaluate the likelihood that the radionuclides would be removed from water during playa inundation. Radionuclide mobility modeling suggested that there would be minimal sorption or exchange of several important radionuclides (uranium, cesium, and technetium) with playa minerals such that they may be mobile in water when the playa is inundated and could infiltrate into the subsurface. Mobility modeling also showed that plutonium may be much less mobile because of sorption onto calcite, but the amount of reactive surface area of playa soil calcite is highly uncertain. Plutonium is also known to sorb onto colloidal particles suspended in water, suspended colloidal particles will move with the water, providing a mechanism to redistribute plutonium when Frenchman Flat playa is inundated. Water chemistry, stable isotopes, and geochemical modeling showed that residual radionuclides in Frenchman Flat playa soils could be mobilized in water when the playa is inundated with precipitation. Also, there is potential for these radionuclides to infiltrate into the subsurface with water. As a result of the information obtained both during this study and the conclusions drawn from it, additional data collection, investigation, and modeling are recommended. Specifically: sampling the playa soil to search for evidence of surface-water infiltration and the presence of radionuclides; developing a preliminary unsaturated flow and transport model to guide soil sampling; characterizing the chemical forms of radionuclides on the playa surface and any radionuclides that might have migrated into the subsurface; and, refining the unsaturated flow and transport model with data obtained from sampling and analysis of soil samples to guide any future sampling, development of remediation strategies, and defining risk-based boundaries for Frenchman Flat playa.« less

Improved discovery of NEON data and samples though vocabularies, workflows, and web tools

NASA Astrophysics Data System (ADS)

Laney, C. M.; Elmendorf, S.; Flagg, C.; Harris, T.; Lunch, C. K.; Gulbransen, T.

2017-12-01

The National Ecological Observatory Network (NEON) is a continental-scale ecological observation facility sponsored by the National Science Foundation and operated by Battelle. NEON supports research on the impacts of invasive species, land use change, and environmental change on natural resources and ecosystems by gathering and disseminating a full suite of observational, instrumented, and airborne datasets from field sites across the U.S. NEON also collects thousands of samples from soil, water, and organisms every year, and partners with numerous institutions to analyze and archive samples. We have developed numerous new technologies to support processing and discovery of this highly diverse collection of data. These technologies include applications for data collection and sample management, processing pipelines specific to each collection system (field observations, installed sensors, and airborne instruments), and publication pipelines. NEON data and metadata are discoverable and downloadable via both a public API and data portal. We solicit continued engagement and advice from the informatics and environmental research communities, particularly in the areas of data versioning, usability, and visualization.

Greater soil carbon stocks and faster turnover rates with increasing agricultural productivity

NASA Astrophysics Data System (ADS)

Sanderman, Jonathan; Creamer, Courtney; Baisden, W. Troy; Farrell, Mark; Fallon, Stewart

2017-01-01

Devising agricultural management schemes that enhance food security and soil carbon levels is a high priority for many nations. However, the coupling between agricultural productivity, soil carbon stocks and organic matter turnover rates is still unclear. Archived soil samples from four decades of a long-term crop rotation trial were analyzed for soil organic matter (SOM) cycling-relevant properties: C and N content, bulk composition by nuclear magnetic resonance (NMR) spectroscopy, amino sugar content, short-term C bioavailability assays, and long-term C turnover rates by modeling the incorporation of the bomb spike in atmospheric 14C into the soil. After > 40 years under consistent management, topsoil carbon stocks ranged from 14 to 33 Mg C ha-1 and were linearly related to the mean productivity of each treatment. Measurements of SOM composition demonstrated increasing amounts of plant- and microbially derived SOM along the productivity gradient. Under two modeling scenarios, radiocarbon data indicated overall SOM turnover time decreased from 40 to 13 years with increasing productivity - twice the rate of decline predicted from simple steady-state models or static three-pool decay rates of measured C pool distributions. Similarly, the half-life of synthetic root exudates decreased from 30.4 to 21.5 h with increasing productivity, indicating accelerated microbial activity. These findings suggest that there is a direct feedback between accelerated biological activity, carbon cycling rates and rates of carbon stabilization with important implications for how SOM dynamics are represented in models.

Large fluxes and rapid turnover of mineral-associated carbon across topographic gradients in a humid tropical forest: insights from paired 14C analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hall, S. J.; McNicol, G.; Natake, T.

2015-04-29

It has been proposed that the large soil carbon (C) stocks of humid tropical forests result predominantly from C stabilization by reactive minerals, whereas oxygen (O 2) limitation of decomposition has received much less attention. We examined the importance of these factors in explaining patterns of C stocks and turnover in the Luquillo Experimental Forest, Puerto Rico, using radiocarbon ( 14C) measurements of contemporary and archived samples. Samples from ridge, slope, and valley positions spanned three soil orders (Ultisol, Oxisol, Inceptisol) representative of humid tropical forests, and differed in texture, reactive metal content, O 2 availability, and root biomass. Mineral-associatedmore » C comprised the large majority (87 ± 2%, n = 30) of total soil C. Turnover of most mineral-associated C (66 ± 2%) was rapid (11 to 26 years; mean and SE: 18 ± 3 years) in 25 of 30 soil samples across surface horizons (0–10 and 10–20 cm depths) and all topographic positions, independent of variation in reactive metal concentrations and clay content. Passive C with centennial–millennial turnover was typically much less abundant (34 ± 3%), even at 10–20 cm depths. Carbon turnover times and concentrations significantly increased with concentrations of reduced iron (Fe(II)) across all samples, suggesting that O 2 availability may have limited the decomposition of mineral-associated C over decadal scales. Steady-state inputs of mineral-associated C were statistically similar among the three topographic positions, and could represent 10–25% of annual litter production. Observed trends in mineral-associated Δ 14C over time could not be fit using the single-pool model used in many other studies, which generated contradictory relationships between turnover and Δ 14C as compared with a more realistic two-pool model. The large C fluxes in surface and near-surface soils documented here are supported by findings from paired 14C studies in other types of ecosystems, and suggest that most mineral-associated C cycles relatively rapidly (decadal scales) across ecosystems that span a broad range of state factors.« less

Constraints on the sources of branched GDGTs in open ocean sediments: dust transport or in situ production?

NASA Astrophysics Data System (ADS)

Weijers, J.; Schefuss, E.; Kim, J.; Sinninghe Damsté, J. S.; Schouten, S.

2012-12-01

Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are membrane lipids synthesized by soil bacteria that, upon soil erosion, are transported by rivers to the ocean where they accumulate in the near shore sedimentary archive. The degrees of cyclisation (CBT) and methylation (MBT) of these compounds have been shown to relate to soil pH and annual mean air temperature [1]. Therefore, brGDGTs in near shore sedimentary archives can be used to estimate past continental air temperatures and enable a direct comparison of these to marine sea surface temperature estimates obtained from the same samples. In addition, brGDGT abundance relative to crenarchaeol, an isoprenoid GDGT synthesized by marine pelagic Thaumarchaeota, quantified in the branched vs. isoprenoid tetraether (BIT) index, is an indicator of the relative input of soil organic matter in near shore sediments [2]. High BIT values near river outflows testify of relative strong soil organic matter input and generally the BIT index will decrease off shore to values near 0, the marine end-member value. Even in remote open ocean sediments, however, the BIT index will rarely reach 0 as small amounts of brGDGTs are often present. The occurrence of these brGDGTs in open marine settings might be a result of i) dust input, ii) sediment dispersion from near coastal areas, or iii) in situ production in marine sediments. In order to constrain the origin of branched GDGTs in open marine sediments we analyzed i) atmospheric dust samples taken along an equatorial African coastal transect, ii) marine surface waters near and away of the Congo river outflow, iii) a series of surface sediments at and around the Congo deep sea fan, and iv) a series of open marine surface sediments from different oceans with BIT values < 0.08. Our results show that brGDGTs are present, though in relative low amounts, in dust. Their distribution resembles that of soil input as also found in the Congo deep sea fan, with MBT and CBT values that could be representative of tropical African soils. Strikingly, BIT indices are much lower than expected for soils (0.15-0.42), likely as a result of sea spray on the dust filters. Open ocean sediments, on the contrary, are typically characterized by relative high amounts of cyclopentane containing brGDGTs resulting in low CBT values ranging from -0.4 - 0.8. These values are similarly low as reported earlier in marine sediments near Svalbard [3] and in the East China Sea [4], for which in situ production was invoked. Thus, brGDGT transport by dust does seem possible, though quantities are low. Since open ocean brGDGT distributions are markedly different from those in soils and dust, the latter is most likely not a significant source. Our results indicate that production of brGDGTs in ocean sediments, though in relative low amounts, is much more widespread than previously thought. This emphasizes that the MBT-CBT proxy for continental air temperature should only be used at locations where soil organic matter input is significant as evidenced by high BIT indices. References: [1] Weijers J.W.H. et al. (2007) Geochmim. Cosmochim. Acta 71, 703-713. [2] Hopmans E.C. et al. (2004) Earth Planet. Sci. Lett. 224, 107-116. [3] Peterse F. et al. (2009) Org. Geochem. 40, 692-699. [4] Zhu C. Et al. (2011) Org. Geochem. 42, 376-386.

Nitrogen Isotopes as an Indicator of Long-Term N Cycling in a Grazed Temperate Pasture Receiving Different Rates of Superphosphate Fertilizer and Irrigation for ~50 Years

NASA Astrophysics Data System (ADS)

Mudge, P. L.; Schipper, L. A.; Ghani, A.; Baisden, W. T.; Dodd, M.

2010-12-01

Pastoral agriculture is the dominant land use in New Zealand and intensification (as a result of fertilizer inputs and in some areas irrigation) has led to increased nitrogen (N) losses to the wider environment. An indicator that could identify soils which are vulnerable to N loss would be useful for the development of management practices and regulations aimed at reducing unwanted N losses. The natural abundance of 15N relative to 14N (δ15N) in soils is one potential indicator. Most N cycle processes associated with N losses (e.g. nitrification, denitrification, and volatilisation) discriminate against 15N and therefore soil δ15N could provide an indication of cumulative N losses. In this study we measured δ15N in archived soils from two long-term field trials receiving different rates of superphosphate fertilizer and irrigation. Both trials were in mid-Canterbury, New Zealand and were grazed by sheep. The fertilizer trial began in 1952, and treatments used were the control (nilP), 376 kg superphosphate ha-1 y-1 (376PA) and a treatment where 376 kg superphosphate ha-1 y-1 was applied between 1952 and 1957, no fertilizer from 1958 to 1979 and then 250 kg superphosphate ha-1 y-1 from 1980 to 2009 (376-0-250PA). The irrigation trial was initiated in 1949 and ceased in 2002. The dryland treatment and treatments irrigated when soil moisture was 10% and 20% were used in this study. From 1958, soil samples (0-75 mm depth) were taken annually from each trial, air dried and archived. Soil samples at four year intervals were analysed for this study. Pasture production varied considerably between treatments, with higher rates of fertilizer and irrigation promoting greater pasture growth and therefore higher grazing intensities. Initially δ15N was about the same (3.3‰) in all treatments of both trials. δ15N in the 376PA treatment of the fertilizer trial increased gradually with time and by 2009 was 4.5‰. In the 376-0-250PA treatment, δ15N stayed constant until about 1980 and then increased rapidly, which coincided with re-commencement of P fertilizer application. δ15N in the nilP treatment initially declined slightly and then remained relatively constant. In the irrigation trial, δ15N stayed constant (~3.3‰) in all three treatments up until around 1985 and then increased. After 1985 there was a separation between treatments with δ15N in the 20% treatment increasing marginally more than the 10% treatment and considerably more than the dryland treatment. We had anticipated an increase and divergence in δ15N values from the start of the irrigation trial. In general soil δ15N scaled with intensity of grazing, which suggests that N losses were greater under more intensive systems. δ15N therefore shows potential as an indicator of the vulnerability of soils to N loss. Further work will investigate the relationship between changes in δ15N and total C and N at these two trials, and future work will seek to directly relate soil δ15N to cumulative N losses via leaching and gaseous emissions.

Biomarker analysis is used in reading soil archives, but do biomarkers survive processes as leaching and digestion?

NASA Astrophysics Data System (ADS)

vanmourik, Jan; Jansen, Boris; Westerveld, Joke

2017-04-01

In previous studies (1,2) we showed that biomarker analysis, i.e. the use of preserved molecular fingerprints indicative of e.g. past vegetation cover or soil organic matter input, is a useful additional technique to read the soils archives in combination with palynology and absolute dating techniques. In these studies we compared biomarker spectra with fossil pollen spectra, using the premise that biomarkers are always released from onsite decomposing plant species and pollen can originate from onsite as well as offsite species. However, compared with pollen analysis, biomarker analysis is a juvenile technique and before it can grow into an established method, some fundamental questions must be answered. In the study of palaeo-Podzols (1) we used firstly pollen spectra to indicate the broad suite of plant species involved in the dynamics of drift sand landscapes. Secondly, we used biomarker spectra to separate onsite from offsite plant species, in order to select the species responsible for landscape stabilization and soil organic carbon sequestration. In this study we interpreted pollen and biomarker spectra from (buried) humic horizons, but we did not explicitly address the sensitivity of biomarkers for possible selective corrosion by soil processes as leaching and transport. Therefore, we analyzed (pollen as well as biomarkers) of samples from the Ah and Bh horizon of (buried) Podzols to investigate the sensitivity of biomarkers for soil processes as podzolation. In the study of plaggic Anthrosols (2) we used biomarkers to indicate stable fillings used to produce plaggic manure. Pollen of Calluna was observed in all the spectra of the plaggic horizon, biomarkers of Calluna only in the youngest spectrum. Consequently, we concluded that only in the last phase of the development of the plaggic horizon the farmers applied sods of the Calluna heath. However, sheep grazing occurred at least since the early Middle Ages and that means that sheep droppings were always part of the plaggic manure. The favorite food consists of grasses, but at the end of the season when grasses become scarce, the animals also consume Calluna shoots. The fact that we did not find any Calluna markers in the older samples may indicate that the biomarkers cannot survive animal congestion. Therefore, we analyzed sheep droppings, collected during the seasons of one year (pollen as well as biomarkers) to investigate the sensitivity of biomarkers for digestion by sheep. The results of these experiment will be presented on the EGU Soil-SRP session, April 2017, Vienna. 1) J.M. van Mourik, and B. Jansen (2013). The added value of biomarker analysis in palaeopedology; reconstruction of the vegetation during stable periods in a polycyclic driftsand sequence in SE-Netherlands, Quaternary International, 306, 14-23, 2013. 2) J.M. van Mourik, T.V. Wagner, J. G. de Boer and B. Jansen (2016). The added value of biomarker analysis to the genesis of plaggic Anthrosols; the identification of stable fillings used for the production of plaggic manure. SOIL, 2, 299-310, 2016.

BOREAS TE-1 Soils Data Over The SSA Tower Sites in Raster Format

NASA Technical Reports Server (NTRS)

Hall, Forrest G. (Editor); Anderson, Darwin; Knapp, David E.

2000-01-01

The BOREAS TE-1 team collected various data to characterize the soil-plant systems in the BOREAS SSA. This data set was gridded from vector layers of soil maps that were received from Dr. Darwin Anderson (TE-1), who did the original soil mapping in the field during 1994. The vector layers were gridded into raster files that cover approximately 1 square kilometer over each of the tower sites in the SSA. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Central Colorado Assessment Project (CCAP)-Geochemical data for rock, sediment, soil, and concentrate sample media

USGS Publications Warehouse

Granitto, Matthew; DeWitt, Ed H.; Klein, Terry L.

2010-01-01

This database was initiated, designed, and populated to collect and integrate geochemical data from central Colorado in order to facilitate geologic mapping, petrologic studies, mineral resource assessment, definition of geochemical baseline values and statistics, environmental impact assessment, and medical geology. The Microsoft Access database serves as a geochemical data warehouse in support of the Central Colorado Assessment Project (CCAP) and contains data tables describing historical and new quantitative and qualitative geochemical analyses determined by 70 analytical laboratory and field methods for 47,478 rock, sediment, soil, and heavy-mineral concentrate samples. Most samples were collected by U.S. Geological Survey (USGS) personnel and analyzed either in the analytical laboratories of the USGS or by contract with commercial analytical laboratories. These data represent analyses of samples collected as part of various USGS programs and projects. In addition, geochemical data from 7,470 sediment and soil samples collected and analyzed under the Atomic Energy Commission National Uranium Resource Evaluation (NURE) Hydrogeochemical and Stream Sediment Reconnaissance (HSSR) program (henceforth called NURE) have been included in this database. In addition to data from 2,377 samples collected and analyzed under CCAP, this dataset includes archived geochemical data originally entered into the in-house Rock Analysis Storage System (RASS) database (used by the USGS from the mid-1960s through the late 1980s) and the in-house PLUTO database (used by the USGS from the mid-1970s through the mid-1990s). All of these data are maintained in the Oracle-based National Geochemical Database (NGDB). Retrievals from the NGDB and from the NURE database were used to generate most of this dataset. In addition, USGS data that have been excluded previously from the NGDB because the data predate earliest USGS geochemical databases, or were once excluded for programmatic reasons, have been included in the CCAP Geochemical Database and are planned to be added to the NGDB.

Sources of particulate organic matter discharged by the Lena River using lignin phenols

NASA Astrophysics Data System (ADS)

Winterfeld, M.; Trojahn, S.; Hefter, J.; Pittauer, D.; Zubrzycki, S.; Han, P.; Rethemeyer, J.; Mollenhauer, G.

2016-12-01

Particulate organic matter (POM) discharged by rivers and deposited offshore their mouths is generally assumed to record an integrated signal from the watershed and therefore provides an archive of past environmental changes. Yet, in large river systems the riverine POM might be trapped in flood plains and the lower reaches resulting in an inefficient transport of POM particularly from the distal parts of the watershed. Further, the POM likely undergoes degradation during transport from source to sink. The Lena River is one of these large river systems stretching from 53°N to 71°N in central Siberia. The watershed can be broadly divided into two different biomes, taiga in the south and tundra in the northernmost part. The relative contribution of these biomes to the POM load of the river and its discharge to the ocean as well as the changes it is undergoing during transport are not well understood. Here we present the lignin phenol composition of different grain size fractions (bulk, 2mm-63µm, <63µm) of soil samples taken along a latitudinal transect (63°N to 72°N) as well as in marine surface sediments and two short sediment cores covering the last 120 years offshore the main Lena discharge channels. The lignin phenol composition of the soil samples (bulk, 2mm-63µm, <63µm) reflects the change in vegetation from south to north with increasing contribution of tundra vegetation. The degree of degradation between the soil sample locations as well as grain size fractions was very heterogeneous and did not show a clear trend. However, the POM seems to be slightly more degraded in the tundra, which is unexpected as the summer period when degradation in the upper thawed part of the soil can take place is shorter in the tundra compared to the southern taiga region. The marine surface sediments were dominated by gymnosperm-derived POM, particularly close to the river mouth and in the <63µm fraction. Because of the large heterogeneity of organic matter degradation in the soil samples and their grain size fractions, it is not quite clear to which degree the POM gets mineralized within the soils and during transport in the river compared to degradation occurring during cross shelf transport.

PERFLUORINATED COMPOUNDS IN ARCHIVED HOUSE-DUST SAMPLES

EPA Science Inventory

Archived house-dust samples were analyzed for 13 perfluorinated compounds (PFCs). Results show that PFCs are found in house-dust samples, and the data are log-normally distributed. PFOS/PFOA were present in 94.6% and 96.4% of the samples respectively. Concentrations ranged fro...

Impact of surface processes and climate variability on clumped isotope thermometry of soil carbonates, southern Central Andes, Argentina (Invited)

NASA Astrophysics Data System (ADS)

Huntington, K. W.; Peters, N.; Roe, G.; Hoke, G. D.; Eiler, J.

2010-12-01

Soil carbonates archive a potentially rich record of past climate, but rates of pedogenic carbonate formation, erosion, and deposition impact how the isotopic composition and formation temperature of carbonate-bearing paleosols reflect the local environmental conditions under which they form. We investigate these processes using conventional stable isotope (δ18O and δ13C) and clumped isotope thermometry data for Quaternary pedogenic carbonates from the southern Central Andes at ~33°S, Argentina. The study area spans over 2 km of relief in the Río Mendoza and Río de las Cuevas valleys, accessing a range of mean annual temperature conditions and vegetative cover and exhibiting large seasonal variations in temperature, precipitation, and soil moisture. Variations in soil conditions influence carbonate precipitation and dissolution reactions and the rate and depth of pedogenic carbonate formation. Because soil temperature varies predictably as a function of depth in the soil and seasonal and secular variations in air temperature, clumped isotope thermometry of samples collected in soil pits offers a direct way to estimate the seasonality of pedogenic carbonate formation and potential biases in the long-term climate record. We explore potential complications due to the effects of radiative solar heating on the relationship between air and soil temperatures by examining clumped isotope thermometry results in the context of site-to-site variations in vegetative cover. Temperature estimates from clumped isotope thermometry of pedogenic carbonate collected 5-110 cm below geomorphically stable soil surfaces from 1200-3400 m a.s.l. are compared to temperature profiles predicted by simple rule-based models of soil carbonate formation. The models use climate reanalysis daily diagnostic data (soil temperature, soil moisture, and latent heat flux as a proxy for evaporation) and weather station data as input to assess how varying rates of pedogenic carbonate formation integrated over millennial timescales might impact the geologic record of temperature and isotopic composition.

BOREAS TE-19 Ecosystem Carbon Balance Model

NASA Technical Reports Server (NTRS)

Hall, Forrest G. (Editor); Papagno, Andrea (Editor); Frolking, Steve

2000-01-01

The BOREAS TE-19 team developed a model called the Spruce and Moss Model (SPAM) designed to simulate the daily carbon balance of a black spruce/moss boreal forest ecosystem. It is driven by daily weather conditions, and consists of four components: (1) soil climate, (2) tree photosynthesis and respiration, (3) moss photosynthesis and respiration, and (4) litter decomposition and associated heterotrophic respiration. The model simulates tree gross and net photosynthesis, wood respiration, live root respiration, moss gross and net photosynthesis, and heterotrophic respiration (decomposition of root litter, young needle and moss litter, and humus). These values can be combined to generate predictions of total site net ecosystem exchange of carbon (NEE), total soil dark respiration (live roots + heterotrophs + live moss), spruce and moss net productivity, and net carbon accumulation in the soil. To date, simulations have been of the BOREAS NSA-OBS and SSA-OBS tower sites, from 1968-95 (except 1990-93). The files include source code and sample input and output files in ASCII format. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Activity Archive Center (DAAC).

An Optimized DNA Analysis Workflow for the Sampling, Extraction, and Concentration of DNA obtained from Archived Latent Fingerprints.

PubMed

Solomon, April D; Hytinen, Madison E; McClain, Aryn M; Miller, Marilyn T; Dawson Cruz, Tracey

2018-01-01

DNA profiles have been obtained from fingerprints, but there is limited knowledge regarding DNA analysis from archived latent fingerprints-touch DNA "sandwiched" between adhesive and paper. Thus, this study sought to comparatively analyze a variety of collection and analytical methods in an effort to seek an optimized workflow for this specific sample type. Untreated and treated archived latent fingerprints were utilized to compare different biological sampling techniques, swab diluents, DNA extraction systems, DNA concentration practices, and post-amplification purification methods. Archived latent fingerprints disassembled and sampled via direct cutting, followed by DNA extracted using the QIAamp® DNA Investigator Kit, and concentration with Centri-Sep™ columns increased the odds of obtaining an STR profile. Using the recommended DNA workflow, 9 of the 10 samples provided STR profiles, which included 7-100% of the expected STR alleles and two full profiles. Thus, with carefully selected procedures, archived latent fingerprints can be a viable DNA source for criminal investigations including cold/postconviction cases. © 2017 American Academy of Forensic Sciences.

Restoration and PDS Archive of Apollo Lunar Rock Sample Data

NASA Technical Reports Server (NTRS)

Garcia, P. A.; Todd, N. S.; Lofgren, G. E.; Stefanov, W. L.; Runco, S. K.; LaBasse, D.; Gaddis, L. R.

2011-01-01

In 2008, scientists at the Johnson Space Center (JSC) Lunar Sample Laboratory and Image Science & Analysis Laboratory (under the auspices of the Astromaterials Research and Exploration Science Directorate or ARES) began work on a 4-year project to digitize the original film negatives of Apollo Lunar Rock Sample photographs. These rock samples together with lunar regolith and core samples were collected as part of the lander missions for Apollos 11, 12, 14, 15, 16 and 17. The original film negatives are stored at JSC under cryogenic conditions. This effort is data restoration in the truest sense. The images represent the only record available to scientists which allows them to view the rock samples when making a sample request. As the negatives are being scanned, they are also being formatted and documented for permanent archive in the NASA Planetary Data System (PDS) archive. The ARES group is working collaboratively with the Imaging Node of the PDS on the archiving.

The geologic records of dust in the Quaternary

USGS Publications Warehouse

Muhs, Daniel R.

2013-01-01

Study of geologic records of dust composition, sources and deposition rates is important for understanding the role of dust in the overall planetary radiation balance, fertilization of organisms in the world’s oceans, nutrient additions to the terrestrial biosphere and soils, and for paleoclimatic reconstructions. Both glacial and non-glacial processes produce fine-grained particles that can be transported by the wind. Geologic records of dust flux occur in a number of depositional archives for sediments: (1) loess deposits; (2) lake sediments; (3) soils; (4) deep-ocean basins; and (5) ice sheets and smaller glaciers. These archives have several characteristics that make them highly suitable for understanding the dynamics of dust entrainment, transport, and deposition. First, they are often distributed over wide geographic areas, which permits reconstruction of spatial variation of dust flux. Second, a number of dating methods can be applied to sediment archives, which allows identification of specific periods of greater or lesser dust flux. Third, aeolian sediment particle size and composition can be determined so that dust source areas can be ascertained and dust transport pathways can be reconstructed. Over much of the Earth’s surface, dust deposition rates were greater during the last glacial period than during the present interglacial period. A dustier Earth during glacial periods is likely due to increased source areas, greater aridity, less vegetation, lower soil moisture, possibly stronger winds, a decreased intensity of the hydrologic cycle, and greater production of dust-sized particles from expanded ice sheets and glaciers.

Organic-geochemical investigations on soil layers affected by theTohoku-oki tsunami (March 2011)

NASA Astrophysics Data System (ADS)

Reicherter, Klaus; Schwarzbauer, Jan; Jaffe, Bruce; Szczucinski, Witold

2014-05-01

Geochemical investigations on tsunami deposits, in particular palaeotsunamites, have mainly focused on inorganic indicators that have been used to distinguish between terrestrial and marine matter in sedimentary archives. Observable tsunami deposits may also be characterised by organic-geochemical parameters reflecting the mixture and unexpected transport of marine and terrestrial matter. The application of organic substances with indicative properties has so far not been used, although the approach of using specific indicators to determine prehistoric, historic and recent processes and impacts (so-called biomarker and anthropogenic marker approach) already exists. In particular, for recent tsunami deposit the analysis of anthropogenic or even xenobiotic compounds as indicators for assessing the impact of tsunamis has been neglected so far. The Tohoku-oki tsunami in March 2011 showed the huge threat that tsunamis, and subsequent flooding of coastal lowlands, pose to society. The mainly sandy deposits of this mega-tsunami reach more than 4.5 km inland as there were run-up heights of ca. 10 m (wave height). The destruction of infrastructure by wave action and flooding is accompanied by the release of environmental pollutants (e.g. fuels, fats, tarmac, plastics, heavy metals, etc.) contaminating the coastal areas and ocean. To characterize this event in the sedimentary deposits, we analyzed several soil archives from the Bay of Sendai area. Soil layers representing the tsunami deposits have been contrasted with unaffected pre-tsunami samples by means of organic-geochemical analyses based on GC/MS. Natural compounds and their diagenetic transformation products have been tested as marker compounds for monitoring this recent tsunami. The relative composition of fatty acids, n-alkanes, sesquiterpenes and further substances pointed to significant variations before and after the tsunami event. Additionally, anthropogenic marker compounds (such as soil derived pesticides, source specific PAHs, halogenated aromatics from industrial sources) have been detected and quantified. Concentration profiles of distinct terrestrial pollutants revealed shifts either to increasing but for selected compounds also to decreasing contamination levels. Generally, this preliminary study points to the usefulness of organic indicator compounds for characterising the two-dimensional expansion of recent but in particular historic tsunami events as well as its time scales.

Spatial and temporal patterns of dust emissions (2004-2012) in semi-arid landscapes, southeastern Utah, USA

USGS Publications Warehouse

Flagg, Cody B.; Neff, Jason C.; Reynolds, Richard L.; Belnap, Jayne

2013-01-01

Aeolian dust can influence nutrient availability, soil fertility, plant interactions, and water-holding capacity in both source and downwind environments. A network of 85 passive collectors for aeolian sediment spanning numerous plant communities, soil types, and land-use histories covering approximately 4000 square kilometers across southeastern Utah was used to sample horizontal emissions of aeolian sediment. The sample archive dates to 2004 and is currently the largest known record of field-scale dust emissions for the southwestern United States. Sediment flux peaked during the spring months in all plant communities (mean: 38.1 g m−2 d−1), related to higher, sustained wind speeds that begin in the early spring. Dust flux was lowest during the winter period (mean: 5 g m−2 d−1) when surface wind speeds are typically low. Sites dominated by blackbrush and sagebrush shrubs had higher sediment flux (mean: 19.4 g m−2 d−1) compared to grasslands (mean: 11.2 g m−2 d−1), saltbush shrublands (mean: 10.3 g m−2 d−1), and woodlands (mean: 8.1 g m−2 d−1). Contrary to other studies on dust emissions, antecedent precipitation during one, two, and three seasons prior to sample collection did not significantly influence emission rates. Physical site-scale factors controlling dust emissions were complex and varied from one vegetation type to another.

Global data bases on distribution, characteristics and methane emission of natural wetlands: Documentation of archived data tape

NASA Technical Reports Server (NTRS)

Matthews, Elaine

1989-01-01

Global digital data bases on the distribution and environmental characteristics of natural wetlands, compiled by Matthews and Fung (1987), were archived for public use. These data bases were developed to evaluate the role of wetlands in the annual emission of methane from terrestrial sources. Five global 1 deg latitude by 1 deg longitude arrays are included on the archived tape. The arrays are: (1) wetland data source, (2) wetland type, (3) fractional inundation, (4) vegetation type, and (5) soil type. The first three data bases on wetland locations were published by Matthews and Fung (1987). The last two arrays contain ancillary information about these wetland locations: vegetation type is from the data of Matthews (1983) and soil type from the data of Zobler (1986). Users should consult original publications for complete discussion of the data bases. This short paper is designed only to document the tape, and briefly explain the data sets and their initial application to estimating the annual emission of methane from natural wetlands. Included is information about array characteristics such as dimensions, read formats, record lengths, blocksizes and value ranges, and descriptions and translation tables for the individual data bases.

Archiving Microgravity Flight Data and Samples

NASA Technical Reports Server (NTRS)

1996-01-01

To obtain help in evaluating its current strategy for archiving data and samples obtained in microgravity research, NASA's Microgravity Science and Applications Division (MSAD) asked the Space Studies Board's Committee on Microgravity Research for guidance on the following questions: What data should be archived and where should it be kept? In what form should the data be maintained (electronic files, photographs, hard copy, samples)? What should the general format of the database be? To what extent should it be universally accessible and through what mechanisms? Should there be a period of time for which principal investigators have proprietary access? If so, how long should proprietary data be stored? What provisions should be made for data obtained from ground-based experiments? What should the deadline be for investigators placing their data in the archive? How long should data be saved? How long should data be easily accessible? As a prelude to making recommendations for optimum selection and storage of microgravity data and samples, the committee in this report briefly describes NASA's past archiving practices and outlines MSAD's current archiving strategy. Although the committee found that only a limited number of experiments have thus far been archived, it concluded that the general archiving strategy, characterized by MSAD as minimalist, appears viable. A central focus of attention is the Experiment Data Management Plan (EDMP), MSAD's recently instituted data management and archiving framework for flight experiments. Many of the report's recommendations are aimed at enhancing the effectiveness of the EDMP approach, which the committee regards as an appropriate data management method for MSAD. Other recommendations provide guidance on broader issues related to the questions listed above. This report does not address statutory or regulatory records retention requirements.

Publications - GMC 407 | Alaska Division of Geological & Geophysical

Science.gov Websites

locations, and archive inventory for 32 near-shore marine sediment Vibracore samples, West Dock Causeway , Drilling procedures, sample descriptions, boring logs, borehole locations, and archive inventory for 32

Does historical wildfire activity alter metal fluxes to northern lakes?

NASA Astrophysics Data System (ADS)

Pelletier, N.; Chetelat, J.; Vermaire, J. C.; Palmer, M.; Black, J.; Pellisey, J.; Tracz, B.; van der Wielen, S.

2017-12-01

Current drought conditions in northwestern Canada are conducive to more frequent and severe wildfires that may mobilize mercury and other metals accumulated in soil and biomass. There is evidence that wildfires can remobilize and transport mercury within and outside catchments by atmospheric volatilization, particulate emissions and catchment soil erosion. However, the effect of fires on mercury fluxes to nearby lake sediments remains unclear. In this study, we use a combination of 10 dated lake sediment cores and four nearby ombrotrophic peatland cores to investigate the effects of wildfires on mercury fluxes to lake sediments. Lakes varying in catchment size and distance from recent fire events were sampled. Mercury concentrations in the environmental archives were measured, and macroscopic charcoal particles (>100 um) were counted at high resolution in the sediments to observe the co-variation of the local fire history and mercury fluxes. Mercury flux recorded in ombrotrophic peat cores provided an estimate of the historical atmospheric mercury flux from local and regional atmospheric deposition. The mercury flux recorded in lake sediments corresponds to the sum of direct atmospheric deposition and catchment transport. In combination, these archives will allow for the partitioning of mercury loading attributable to catchment transport from direct atmospheric deposition. After correcting the fluxes for particle focusing and terragenic elements input, flux from different lakes will be compared based on their catchment size and their temporal and spatial proximity known fire events. Altogether, our preliminary results using these paleolimnological methods will provide new insights on mercury transport processes that are predicted to become more important under a changing climate.

PDS Archive Release of Apollo 11, Apollo 12, and Apollo 17 Lunar Rock Sample Images

NASA Technical Reports Server (NTRS)

Garcia, P. A.; Stefanov, W. L.; Lofgren, G. E.; Todd, N. S.; Gaddis, L. R.

2013-01-01

Scientists at the Johnson Space Center (JSC) Lunar Sample Laboratory, Information Resources Directorate, and Image Science & Analysis Laboratory have been working to digitize (scan) the original film negatives of Apollo Lunar Rock Sample photographs [1, 2]. The rock samples, and associated regolith and lunar core samples, were obtained during the Apollo 11, 12, 14, 15, 16 and 17 missions. The images allow scientists to view the individual rock samples in their original or subdivided state prior to requesting physical samples for their research. In cases where access to the actual physical samples is not practical, the images provide an alternate mechanism for study of the subject samples. As the negatives are being scanned, they have been formatted and documented for permanent archive in the NASA Planetary Data System (PDS). The Astromaterials Research and Exploration Science Directorate (which includes the Lunar Sample Laboratory and Image Science & Analysis Laboratory) at JSC is working collaboratively with the Imaging Node of the PDS on the archiving of these valuable data. The PDS Imaging Node is now pleased to announce the release of the image archives for Apollo missions 11, 12, and 17.

Fate of Organic Matters in a Soil Erosion Context : Qualitative and Quantitative Monitoring in a Karst Hydrosystem

NASA Astrophysics Data System (ADS)

Quiers, M.; Gateuille, D.; Perrette, Y.; Naffrechoux, E.; David, B.; Malet, E.

2017-12-01

Soils are a key compartments of hydrosystems, especially in karst aquifers which are characterized by fast hydrologic responses to rainfalls. In steady state, soils are efficient filters preventing karst water from pollutions. But agricultural or forestry land uses can alter or even reverse the role of soils. Thus , soils can act as pollution sources rather than pollution filters. In order to manage water quality together with man activities in karst environment, the development of new tools and procedures designed to monitor the fate of soil organic matter are needed. This study reports two complementary methods applied in a moutain karst system impacted by anthropic activities and environmental stresses. A continuous monitoring of water fluorescence coupled with punctual sampling was analyzed by chemiometric methods and allowed to discriminate the type of organic matter transferred through the karst system along the year (winter / summer) and hydrological stages. As a main result, the modelisation of organic carbone fluxes is dominated by a colloidal or particulate part during highwaters, and a main part dissolved in solution during low water, demonstrating the change of organic carbone source. To confirm this result, a second method was used based on the observation of Polycyclic Aromatic Hydrocarbons (PAH) profiles. Two previous studies (Perrette et al 2013, Schwarz et al 2011) led to opposite conclusions about the fate of PAH from soil to groundwaters. This opposition leads to a potential use of PAH profiles (low molecular weight less hydrophobic ones versus high molecular weight more hydrophobic ones) as an indicator of soil erosion. We validate that use by the anaylsis of these PAH profiles for low and high waters (floods). These results demonstrate if needed the high vulnerability of karst system to soil erosion, and propose a new proxy to record soils erosion in groundwaters and in natural archives as stalagmites or sediments.

Evaluating Quality of Aged Archival Formalin-Fixed Paraffin-Embedded Samples for RNA-Sequencing

EPA Science Inventory

Archival formalin-fixed paraffin-embedded (FFPE) samples offer a vast, untapped source of genomic data for biomarker discovery. However, the quality of FFPE samples is often highly variable, and conventional methods to assess RNA quality for RNA-sequencing (RNA-seq) are not infor...

The effects of age-in-block on RNA-seq analysis of archival formalin-fixed paraffin-embedded (FFPE) samples

EPA Science Inventory

Archival samples represent a vast resource for identification of chemical and pharmaceutical targets. Previous use of formalin-fixed paraffin-embedded (FFPE) samples has been limited due to changes in RNA introduced by fixation and embedding procedures. Recent advances in RNA-seq...

EarthScope's Transportable Array: Status of the Alaska Deployment and Guide to Resources for Lower48 Deployment

NASA Astrophysics Data System (ADS)

Busby, R. W.; Woodward, R.; Aderhold, K.; Frassetto, A.

2017-12-01

The Alaska Transportable Array deployment is completely installed, totaling 280 stations, with 194 new stations and 86 existing stations, 28 of those upgraded with new sensor emplacement. We briefly summarize the deployment of this seismic network, describe the added meteorological instruments and soil temperature gauges, and review our expectations for operation and demobilization. Curation of data from the contiguous Lower-48 States deployment of Transportable Array (>1800 stations, 2004-2015) has continued with the few gaps in real-time data replaced by locally archived files as well as minor adjustments in metadata. We highlight station digests that provide more detail on the components and settings of individual stations, documentation of standard procedures used throughout the deployment and other resources available online. In cooperation with IRIS DMC, a copy of the complete TA archive for the Lower-48 period has been transferred to a local disk to experiment with data access and software workflows that utilize most or all of the seismic timeseries, in contrast to event segments. Assembling such large datasets reliably - from field stations to a well managed data archive to a user's workspace - is complex. Sharing a curated and defined data volume with researchers is a potentially straightforward way to make data intensive analyses less difficult. We note that data collection within the Lower-48 continues with 160 stations of the N4 network operating at increased sample rates (100 sps) as part of the CEUSN, as operational support transitions from NSF to USGS.

Increasing Access to Archival Records in Library Online Public Access Catalogs.

ERIC Educational Resources Information Center

Gilmore, Matthew B.

1988-01-01

Looks at the use of online public access catalogs, the utility of subject and call-number searching, and possible archival applications. The Wallace Archives at the Claremont Colleges is used as an example of the availability of bibliographic descriptions of multiformat archival materials through the library catalog. Sample records and searches…

A biological survey on the Ottoman Archive papers and determination of the D10 value

NASA Astrophysics Data System (ADS)

Kantoğlu, Ömer; Ergun, Ece; Ozmen, Dilan; Halkman, Hilal B. D.

2018-03-01

The Ottoman Archives have one of the richest archive collections in the world. However, not all the archived documents are well preserved and some undergo biodeterioration. Therefore, a rapid and promising treatment method is necessary to preserve the collection for following generations as heritage. Radiation presents as an alternative for the treatment of archival materials for this purpose. In this study, we conducted a survey to determine the contamination species and the D10 values of the samples obtained from the shelves of the Ottoman Archives. The samples also included several insect pests collected at using a pheromone trap placed in the archive storage room. With the exception of few localized problems, no active pest presence was observed. The D10 values of mold contamination and reference mold (A. niger) were found to be 1.0 and 0.68 kGy, respectively. Based on these results, it can be concluded that an absorbed dose of 6 kGy is required to remove the contamination from the materials stored in the Ottoman Archives.

Resolving global versus local/regional Pu sources in the environment using sector ICP-MS

USGS Publications Warehouse

Ketterer, M.E.; Hafer, K.M.; Link, C.L.; Kolwaite, D.; Wilson, Jim; Mietelski, J.W.

2004-01-01

Sector inductively coupled plasma mass spectrometry is a versatile method for the determination of plutonium activities and isotopic compositions in samples containing this element at fallout levels. Typical detection limits for 239+240Pu are 0.1, 0.02 and 0.002 Bq kg -1Pu for samples sizes of 0.5 g, 3 g, and 50 g of soil, respectively. The application of sector ICP-MS-based Pu determinations is demonstrated in studies in sediment chronology, soil Pu inventory and depth distribution, and the provenance of global fallout versus local or regional Pu sources. A sediment core collected from Sloans Lake (Denver, Colorado, USA) exhibits very similar 137Cs and 239+240Pu activity profiles; 240Pu/239Pu atom ratios indicate possible small influences from the Nevada Test Site and/or the Rocky Flats Environmental Technology Site. An undisturbed soil profile from Lockett Meadow (Flagstaff, Arizona, USA) exhibits an exponential decrease in 239+240Pu activity versus depth; 240Pu/239Pu in the top 3 cm is slightly lower than the global fallout range of 0.180 ?? 0.014 due to possible regional influence of Nevada Test Site fallout. The 239??240Pu inventory at Lockett Meadow is 56 ?? 4 Bq m-2, consistent with Northern Hemisphere mid-latitude fallout. Archived NdF3 sources, prepared from Polish soils, demonstrate that substantial 239+240Pu from the 1986 Chernobyl disaster has been deposited in north eastern regions of Poland; compared to global fallout, Chernobyl Pu exhibits higher abundances of 240Pu and 241Pu. The ratios 240Pu/239pu and 241Pu/239Pu co-vary and range from 0.186-0.348 and 0.0029-0.0412, respectively, in forest soils (241Pu/239Pu = 0.2407??[240Pu/239Pu] - 0.0413; r2 = 0.9924). ?? The Royal Society of Chemistry 2004.

A 40 ka high-resolution soil carbonate record from southern Utah: proxy development, paleohydrology, and paleoecology

NASA Astrophysics Data System (ADS)

Huth, T.; Cerling, T. E.; Marchetti, D. W.; Fernandez, D. P.; Mackey, G. N., III; Bowling, D. R.; Passey, B. H.

2017-12-01

Terrestrial paleoclimate records are critically important for testing hypotheses of climate dynamics and verifying climate simulations. However, unlike their oceanic counterparts, terrestrial records are short, more commonly discontinuous, and require specific geographic conditions not necessarily ideal for proposed questions (e.g., speleothem records must come from wherever a cave occurs). We instead utilize laminated soil carbonate rinds as a high resolution (100s yr) paleoclimate archive. Soil carbonate rinds can represent 10s-100s kyr, are apparently continuous over relevant timescales, maintain stratigraphic order, and are common in arid and semi-arid regions. We demonstrate the utility of this methodology at Torrey, Utah which is at the northern edge of the North American Monsoon (NAM). Sample rinds form on the bottom of large (≈1 m) boulders. The rinds are 0.5-2 cm thick and have visually and microscopically identifiable stratigraphy. Radiocarbon dates are in order and suggest a nearly constant growth rate from ≈40 ka to 3 ka, when the record ends. However, the pendants have significant pore space, so secondary carbonate has the potential to bias sample ages to be too young by 100s-1000s years. Precise sampling may be able to mitigate this bias. In spite of the potential secondary carbonate bias, δ13C and δ18O analyses show trends consistent with regional records. Secondary carbonate is therefore a concern, but apparently does not overpower the primary isotopic signals. A calibration study identified soil carbonate formation during the peak growing season (i.e., JAS, during the NAM), so we interpret our records as summer signals modulated by soil `memory' effects. The δ18O record has low variability (±0.5 ‰) but mimics regional NAM records, suggesting similar climate drivers as far north as Utah. The δ13C record shows some correlation with δ18O, which is reasonable given that the strength of the NAM can drive ecologic responses. However, the data are a more reasonable match for insolation, implicating it as a more important factor in regional ecology. For example, high insolation correlates with a C4 dominated landscape, even during the height of the Last Glacial Maximum. These data highlight the potential for soil carbonate rinds to provide long, continuous paleorecords at specific locations.

BOREAS HYD-6 Ground Gravimetric Soil Moisture Data

NASA Technical Reports Server (NTRS)

Carroll, Thomas; Knapp, David E. (Editor); Hall, Forrest G. (Editor); Peck, Eugene L.; Smith, David E. (Technical Monitor)

2000-01-01

The Boreal Ecosystem-Atmosphere Study (BOREAS) Hydrology (HYD)-6 team collected several data sets related to the moisture content of soil and overlying humus layers. This data set contains percent soil moisture ground measurements. These data were collected on the ground along the various flight lines flown in the Southern Study Area (SSA) and Northern Study Area (NSA) during 1994 by the gamma ray instrument. The data are available in tabular ASCII files. The HYD-06 ground gravimetric soil moisture data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). The data files are available on a CD-ROM (see document number 20010000884).

Alaska Geochemical Database, Version 2.0 (AGDB2)--including “best value” data compilations for rock, sediment, soil, mineral, and concentrate sample media

USGS Publications Warehouse

Granitto, Matthew; Schmidt, Jeanine M.; Shew, Nora B.; Gamble, Bruce M.; Labay, Keith A.

2013-01-01

The Alaska Geochemical Database Version 2.0 (AGDB2) contains new geochemical data compilations in which each geologic material sample has one “best value” determination for each analyzed species, greatly improving speed and efficiency of use. Like the Alaska Geochemical Database (AGDB, http://pubs.usgs.gov/ds/637/) before it, the AGDB2 was created and designed to compile and integrate geochemical data from Alaska in order to facilitate geologic mapping, petrologic studies, mineral resource assessments, definition of geochemical baseline values and statistics, environmental impact assessments, and studies in medical geology. This relational database, created from the Alaska Geochemical Database (AGDB) that was released in 2011, serves as a data archive in support of present and future Alaskan geologic and geochemical projects, and contains data tables in several different formats describing historical and new quantitative and qualitative geochemical analyses. The analytical results were determined by 85 laboratory and field analytical methods on 264,095 rock, sediment, soil, mineral and heavy-mineral concentrate samples. Most samples were collected by U.S. Geological Survey personnel and analyzed in U.S. Geological Survey laboratories or, under contracts, in commercial analytical laboratories. These data represent analyses of samples collected as part of various U.S. Geological Survey programs and projects from 1962 through 2009. In addition, mineralogical data from 18,138 nonmagnetic heavy-mineral concentrate samples are included in this database. The AGDB2 includes historical geochemical data originally archived in the U.S. Geological Survey Rock Analysis Storage System (RASS) database, used from the mid-1960s through the late 1980s and the U.S. Geological Survey PLUTO database used from the mid-1970s through the mid-1990s. All of these data are currently maintained in the National Geochemical Database (NGDB). Retrievals from the NGDB were used to generate most of the AGDB data set. These data were checked for accuracy regarding sample location, sample media type, and analytical methods used. This arduous process of reviewing, verifying and, where necessary, editing all U.S. Geological Survey geochemical data resulted in a significantly improved Alaska geochemical dataset. USGS data that were not previously in the NGDB because the data predate the earliest U.S. Geological Survey geochemical databases, or were once excluded for programmatic reasons, are included here in the AGDB2 and will be added to the NGDB. The AGDB2 data provided here are the most accurate and complete to date, and should be useful for a wide variety of geochemical studies. The AGDB2 data provided in the linked database may be updated or changed periodically.

Attitudes of the Japanese public and doctors towards use of archived information and samples without informed consent: preliminary findings based on focus group interviews.

PubMed

Asai, Atsushi; Ohnishi, Motoki; Nishigaki, Etsuyo; Sekimoto, Miho; Fukuhara, Shunichi; Fukui, Tsuguya

2002-01-09

The purpose of this study is to explore laypersons' attitudes toward the use of archived (existing) materials such as medical records and biological samples and to compare them with the attitudes of physicians who are involved in medical research. Three focus group interviews were conducted, in which seven Japanese male members of the general public, seven female members of the general public and seven physicians participated. It was revealed that the lay public expressed diverse attitudes towards the use of archived information and samples without informed consent. Protecting a subject's privacy, maintaining confidentiality, and communicating the outcomes of studies to research subjects were regarded as essential preconditions if researchers were to have access to archived information and samples used for research without the specific informed consent of the subjects who provided the material. Although participating physicians thought that some kind of prior permission from subjects was desirable, they pointed out the difficulties involved in obtaining individual informed consent in each case. The present preliminary study indicates that the lay public and medical professionals may have different attitudes towards the use of archived information and samples without specific informed consent. This hypothesis, however, is derived from our focus groups interviews, and requires validation through research using a larger sample.

Effectiveness of Vegetation Index Transformation for Land Use Identifying and Mapping in the Area of Oil palm Plantation based on SPOT-6 Imagery (Case Study: PT.Tunggal Perkasa Plantations, Air Molek, Indragiri Hulu)

NASA Astrophysics Data System (ADS)

Setyowati, H. A.; S, S. H. Murti B.; Sukentyas, E. S.

2016-11-01

The reflection of land surface, atmosphere and vegetation conditions affect the reflectance value of the object is recorded on remote sensing image so that it can affect the outcome of information extraction from remote sensing imagery one multispectral classification. This study aims to assess the ability of the transformation of generic vegetation index (Wide Dynamic Range Vegetation Index), the vegetation index transformation that is capable reducing the influence of the atmosphere (Atmospherically Resistant Vegetation Index), and the transformation of vegetation index that is capable of reducing the influence of the background soil (Second Modified Soil Adjusted Vegetation Index) for the identification and mapping of land use in the oil palm plantation area based on SPOT-6 archived on June 13, 2013 from LAPAN. The study area selected oil palm plantations PT. Tunggal Perkasa Plantations, Air Molek, Indragiri Hulu, Riau Province. The method is using the transformation of the vegetation index ARVI, MSAVI2, and WDRVI. Sample selection method used was stratified random sampling. The test method used mapping accuracy of the confusion matrix. The results showed that the best transformation of the vegetation index for the identification and mapping of land use in the plantation area is ARVI transformation with a total of accuracy is 96%. Accuracy of mapping land use settlements 100%, replanting 82.35%, 81.25% young oil palm, old oil palm 99.46%, 100% bush, body of water 100%, and 100% bare-soil.

Plant traits, productivity, biomass and soil properties from forest sites in the Pacific Northwest, 1999-2014.

PubMed

Berner, Logan T; Law, Beverly E

2016-01-19

Plant trait measurements are needed for evaluating ecological responses to environmental conditions and for ecosystem process model development, parameterization, and testing. We present a standardized dataset integrating measurements from projects conducted by the Terrestrial Ecosystem Research and Regional Analysis- Pacific Northwest (TERRA-PNW) research group between 1999 and 2014 across Oregon and Northern California, where measurements were collected for scaling and modeling regional terrestrial carbon processes with models such as Biome-BGC and the Community Land Model. The dataset contains measurements of specific leaf area, leaf longevity, leaf carbon and nitrogen for 35 tree and shrub species derived from more than 1,200 branch samples collected from over 200 forest plots, including several AmeriFlux sites. The dataset also contains plot-level measurements of forest composition, structure (e.g., tree biomass), and productivity, as well as measurements of soil structure (e.g., bulk density) and chemistry (e.g., carbon). Publically-archiving regional datasets of standardized, co-located, and geo-referenced plant trait measurements will advance the ability of earth system models to capture species-level climate sensitivity at regional to global scales.

Plant traits, productivity, biomass and soil properties from forest sites in the Pacific Northwest, 1999-2014

NASA Astrophysics Data System (ADS)

Berner, Logan T.; Law, Beverly E.

2016-01-01

Plant trait measurements are needed for evaluating ecological responses to environmental conditions and for ecosystem process model development, parameterization, and testing. We present a standardized dataset integrating measurements from projects conducted by the Terrestrial Ecosystem Research and Regional Analysis- Pacific Northwest (TERRA-PNW) research group between 1999 and 2014 across Oregon and Northern California, where measurements were collected for scaling and modeling regional terrestrial carbon processes with models such as Biome-BGC and the Community Land Model. The dataset contains measurements of specific leaf area, leaf longevity, leaf carbon and nitrogen for 35 tree and shrub species derived from more than 1,200 branch samples collected from over 200 forest plots, including several AmeriFlux sites. The dataset also contains plot-level measurements of forest composition, structure (e.g., tree biomass), and productivity, as well as measurements of soil structure (e.g., bulk density) and chemistry (e.g., carbon). Publically-archiving regional datasets of standardized, co-located, and geo-referenced plant trait measurements will advance the ability of earth system models to capture species-level climate sensitivity at regional to global scales.

NHEXAS PHASE I REGION 5 STUDY--STANDARD OPERATING PROCEDURE--NHEXAS FILTER HANDLING, WEIGHING AND ARCHIVING PROCEDURES FOR AEROSOL SAMPLES (RTI/ACS-AP-209-011)

EPA Science Inventory

This protocol describes the procedures for weighing, handling, and archiving aerosol filters and for managing the associated analytical and quality assurance data. Filter samples were weighed for aerosol mass at RTI laboratory, with only the automated field sampling data transfer...

Ancient Terrestrial Carbon: Lost and Found

NASA Astrophysics Data System (ADS)

Freeman, K. H.

2017-12-01

Carbon fluxes in terrestrial environments dominate the global carbon cycle. The fluxes of terrestrial carbon are strongly tied to regional climate due to the influences of temperature, water, and nutrient dynamics on plant productivity. However, climate also influences the destruction of terrestrial organic matter, through weathering, erosion, and biomass loss via fire and oxidative microbial processes. Organic geochemical methods enable us to interrogate past terrestrial carbon dynamics and learn how continental processes might accelerate, or mitigate carbon transfer to the atmosphere, and the associated greenhouse warming. Terrestrial soil systems represent the weathering rind of the continents, and are inherently non-depositional and erosive. The production, transport, and depositional processes affecting organics in continental settings each impart their own biases on the amount and characteristics of preserved carbon. Typically, the best archives for biomarker records are sediments in ancient lakes or subaqueous fans, which represents a preservation bias that tends to favor wetter environments. Paleosols, or ancient soils, formed under depositional conditions that, for one reason or another, truncated soil ablation, erosion, or other loss processes. In modern soils, widely ranging organic carbon abundances are almost always substantially greater than the trace amounts of carbon left behind in ancient soils. Even so, measureable amounts of organic biomarkers persist in paleosols. We have been investigating processes that preserve soil organic carbon on geologic timescales, and how these mechanisms may be sensitive to past climate change. Climate-linked changes in temperature, moisture, pH, and weathering processes can impact carbon preservation via organo-mineral sorption, soil biogeochemistry, and stability based on the physical and chemical properties of organic compounds. These will be discussed and illustrated with examples from our studies of Cenozoic terrestrial archives. Mechanistic-based understanding of climate's role in the extensive loss of carbon within both deep and shallow ancient soil horizons has implications for predicting modern carbon budgets on a rapidly warming planet.

Subject Access Points in the MARC Record and Archival Finding Aid: Enough or Too Many?

ERIC Educational Resources Information Center

Cox, Elizabeth; Czechowski, Leslie

2007-01-01

In this research project, the authors set out to discover the current practice in both the archival and cataloging worlds for usage of access points in descriptive records and to learn how archival descriptive practices fit into long-established library cataloging procedures and practices. A sample of archival finding aids and MARC records at 123…

Identification of a novel lipid biomarker in lake sediments: Implications for the aquatic production of branched GDGTs

NASA Astrophysics Data System (ADS)

Weber, Yuki; De Jonge, Cindy; Rijpstra, W. Irene C.; Hopmans, Ellen C.; Stadnitskaia, Alina; Schubert, Carsten J.; Lehmann, Moritz F.; Sinninghe Damsté, Jaap S.; Niemann, Helge

2014-05-01

Branched dialkyl glycerol tetraethers (brGDGTs) are bacterial membrane lipids that occur ubiquitously in soils worldwide. Their relative abundances (which form the MBT and CBT indices) correlate with mean annual air temperature (MAAT) and pH, making them potential proxies for paleoenvironmental reconstructions in sedimentary archives with organic matter input of from terrestrial environments. In lake sediments, however, brGDGT distributions mostly relate differently to MAAT compared to soils. A likely cause for this discrepancy is in situ production of brGDGTs within the lake water column and/or -sediments by microorganisms possessing a membrane physiology that is different from soil bacteria. Until to date, existing analytical methods did not allow the distinction between soil-and lake-derived brGDGTs, complicating paleoclimate reconstructions in lacustrine settings. In order to decipher differences in the structure and the relative distribution of brGDGTs in lake deposits versus soils, we analysed samples from 35 Swiss alpine lakes and their catchments using an improved HPLC protocol. Our data revealed a novel isomer of the hexamethylated, non-cyclic brGDGT, which was previously co-eluting with the recently described 5- and 6-methyl isomers. About half of the 35 investigated lakes contained this compound where it accounted for 1 - 11 % of total brGDGTs. We were able to isolate the previously unknown isomer by multi-step preparative HPLC. The structure of the molecule was assessed by determining the identity of its alkyl chains by ether cleavage with HI and subsequent analysis with gas chromatography quadrupole mass spectrometry (GC-MS). In addition, the carbon isotopic composition of the fragments was determined to trace their biological source. In contrast to lake sediments, soil samples analysed from the watersheds of the studied lakes did not contain the newly discovered GDGT, providing evidence for in situ production in aquatic systems. This novel isomer is the first identified, lake specific brGDGT and we expect that its recognition can significantly improve the interpretation of lacustrine brGDGTs distributions.

St. Petersburg Coastal and Marine Science Center's Core Archive Portal

USGS Publications Warehouse

Reich, Chris; Streubert, Matt; Dwyer, Brendan; Godbout, Meg; Muslic, Adis; Umberger, Dan

2012-01-01

This Web site contains information on rock cores archived at the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center (SPCMSC). Archived cores consist of 3- to 4-inch-diameter coral cores, 1- to 2-inch-diameter rock cores, and a few unlabeled loose coral and rock samples. This document - and specifically the archive Web site portal - is intended to be a 'living' document that will be updated continually as additional cores are collected and archived. This document may also contain future references and links to a catalog of sediment cores. Sediment cores will include vibracores, pushcores, and other loose sediment samples collected for research purposes. This document will: (1) serve as a database for locating core material currently archived at the USGS SPCMSC facility; (2) provide a protocol for entry of new core material into the archive system; and, (3) set the procedures necessary for checking out core material for scientific purposes. Core material may be loaned to other governmental agencies, academia, or non-governmental organizations at the discretion of the USGS SPCMSC curator.

The Agh Band loess-palaeosol sequence in Northern Iran - a detailed archive for climate and environmental change during the last and penultimate glacial - interglacial cycles

NASA Astrophysics Data System (ADS)

Lauer, Tobias; Frechen, Manfred; Vlaminck, Stefan; Kehl, Martin; Sharifi, Jafar; Rolf, Christian; Khormali, Farhad

2016-04-01

The northern Iranian loess profiles host important information on quaternary climate and palaeoenvironmental changes in the region. Furthermore, they build an important link to correlate European and Central Asian archives. Due to a significant climatic gradient with decreasing precipitation from the west to the east and from the south to the north, loess-palaeosol sequences which were formed synchronously under different climatic conditions can be studied. The Agh Band profile is located in the so called Iranian "Loess Plateau", a semi-arid region with about 300 mm annual precipitation. The loess deposits reach a thickness of > 60 meters and are subdivided by several weak soil horizons in the more upper part and by a pedo-complex of 3 Bw(y) horizons in the lower part of the loess. The Agh Band profile was sampled in 2 cm intervals for multi-proxy analyses (e.g. magnetic susceptibility and grain size measurements). Furthermore, samples for palaeomangentic studies and luminescence dating were collected and a pIRIR290 approach was applied to fine-grain polyminerals. The results show that the Agh Band profile yields a climate archive reaching from MIS 7 to MIS 2. Several chronological hiatuses of some 10 ka show that periods of intense loess accumulation were interrupted by phases of only minor loess sedimentation and/or erosion. The Agh Band profile hosts an extraordinary good temporal resolution for MIS 4 and MIS 5. The pedocomplex at the bottom part of the profile indicates a period of increased humidity and landscape stability during late MIS 7 and MIS 6 following the luminescence ages. The loess-profile is also subdivided by several shifts in grain-size distribution. The coarsening- and fining up trends correlate with increasing and decreasing wind- velocity, respectively.

Acidification of forest soil in Russia: From 1893 to present

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lapenis, A.G.; Lawrence, G.B.; Andreev, A.A.

2003-01-02

It is commonly believed that fine-textured soils developed on carbonate parent material are well buffered from possible acidification. There are no data, however, that document resistance of such soils to acidic deposition exposure on a timescale longer than 30-40 years. In this paper, we report on directly testing the long-term buffering capacity of nineteenth century forest soils developed on calcareous silt loam. In a chemical analysis comparing archived soils with modern soils collected from the same locations similar to 100 years later, we found varying degrees of forest-soil acidification in the taiga and forest steppe regions. Land-use history, increases inmore » precipitation, and acidic deposition were contributing factors in acidification. The acidification of forest soil was documented through decreases in soil pH and changes in concentrations of exchangeable calcium and aluminum, which corresponded with changes in communities of soil microfauna. Although acidification was found at all three analyzed locations, the trends in soil chemistry were most pronounced where the highest loading of acidic deposition had taken place.« less

Acidification of forest soil in Russia: From 1893 to present

USGS Publications Warehouse

Lapenis, A.G.; Lawrence, G.B.; Andreev, A.A.; Bobrov, A.A.; Torn, M.S.; Harden, J.W.

2004-01-01

It is commonly believed that fine-textured soils developed on carbonate parent material are well buffered from possible acidification. There are no data, however, that document resistance of such soils to acidic deposition exposure on a timescale longer than 30-40 years. In this paper, we report on directly testing the long-term buffering capacity of nineteenth century forest soils developed on calcareous silt loam. In a chemical analysis comparing archived soils with modern soils collected from the same locations ???100 years later, we found varying degrees of forest-soil acidification in the taiga and forest steppe regions. Land-use history, increases in precipitation, and acidic deposition were contributing factors in acidification. The acidification of forest soil was documented through decreases in soil pH and changes in concentrations of exchangeable calcium and aluminum, which corresponded with changes in communities of soil microfauna. Although acidification was found at all three analyzed locations, the trends in soil chemistry were most pronounced where the highest loading of acidic deposition had taken place. Copyright 2004 by the American Geophysical Union.

Assessment of Holocene soil erosion rates on the loess plateau in East Poland using sedimentary archives from closed depressions

NASA Astrophysics Data System (ADS)

Kołodyńska-Gawrysiak, Renata; Poesen, Jean; Gawrysiak, Leszek

2016-04-01

Closed depressions (CDs) are typical geomorphological features of the European loess belt. They are closed sedimentation basins that enable the estimation of long-term soil erosion rates for different land use environments. This study was conducted in eastern Poland (Nałęczów Plateau). In this region CDs are rather small landforms and the area of 70% of all CDs does not exceed 1500 m2. The study objective was to assess Holocene soil erosion rates in the loess plateau based on a quantitative analysis of colluvial sediments deposited in CDs. Two representative CDs were selected for this study: one CD is located in an old (long-term) forest and the other is situated in a long-term agricultural land. The maximum depth of the CD in the forest, the mean slope gradient and area of the corresponding catchment are 4.9 m, 3.410 and 7568 m² respectively. For the CD in agricultural land these values are 3.2 m, 2.760 and 5156 m² respectively. In both CDs several dozen of drillings and two trenches (2 m long, 1m wide, 2 m deep) were made in the deepest point of the CDs. Mean long-term soil erosion rates were calculated based on the stratigraphy of the soil-sediment sequence infilling the CDs. C-14 and OSL datings of soils and colluvial sediments within the CDs were obtained. For the long-term agricultural used catchment of the CD it was calculated that since 6.31 ± 0.35 ka BP the mean annual soil loss due to water and tillage erosion is 0.63-0.7 t/ha/year or 279.3 mm. In the prehistoric period since 6.31 ± 0.35 ka BP until 1026-1162 AD the mean annual soil erosion rate amounted to 0,10-0.11 t/ha/year or 41.5 mm. During the last ca. 1000 years mean soil erosion rates increased to 3.99-4.63 t/ha/year or 249.2 mm. Results of long-term soil erosion rates (calculated using colluvial sediment sequences in CDs) from agricultural catchments in the loess regions of eastern Poland (this study) and Central Belgium (Gillijns et al. 2005) are quite similar. For the forested catchment of the CD the mean annual soil erosion rate since at least ca. 1000 years is 0.073-0.086 t/ha/year or 41.9 mm. In this catchment soil erosion and correlative colluviation deposits occurred mainly in prehistoric times. CDs play an important role for archiving sediments which allow to reconstruct both natural and anthropogenic processes in the past. The study of these sediment archives allows a better understanding of human-environment interactions and its impact on long-term soil erosion rates. Acknowledgements: The research project was financially supported by the National Centre of Science - project PB-B-12-287-00-13: The origin and evolution of closed depressions in the loess area of the Lublin Upland and their importance for the reconstruction of postglacial morphogenesis of the loess covers. References: Gillijns K., Poesen J., Deckers J., 2005: On the characteristics and origin of closed depression in loess-derived soils in Europe- a case study from central Belgium. Catena 60, 43-58.

Using a spatial and tabular database to generate statistics from terrain and spectral data for soil surveys

USGS Publications Warehouse

Horvath , E.A.; Fosnight, E.A.; Klingebiel, A.A.; Moore, D.G.; Stone, J.E.; Reybold, W.U.; Petersen, G.W.

1987-01-01

A methodology has been developed to create a spatial database by referencing digital elevation, Landsat multispectral scanner data, and digitized soil premap delineations of a number of adjacent 7.5-min quadrangle areas to a 30-m Universal Transverse Mercator projection. Slope and aspect transformations are calculated from elevation data and grouped according to field office specifications. An unsupervised classification is performed on a brightness and greenness transformation of the spectral data. The resulting spectral, slope, and aspect maps of each of the 7.5-min quadrangle areas are then plotted and submitted to the field office to be incorporated into the soil premapping stages of a soil survey. A tabular database is created from spatial data by generating descriptive statistics for each data layer within each soil premap delineation. The tabular data base is then entered into a data base management system to be accessed by the field office personnel during the soil survey and to be used for subsequent resource management decisions.Large amounts of data are collected and archived during resource inventories for public land management. Often these data are stored as stacks of maps or folders in a file system in someone's office, with the maps in a variety of formats, scales, and with various standards of accuracy depending on their purpose. This system of information storage and retrieval is cumbersome at best when several categories of information are needed simultaneously for analysis or as input to resource management models. Computers now provide the resource scientist with the opportunity to design increasingly complex models that require even more categories of resource-related information, thus compounding the problem.Recently there has been much emphasis on the use of geographic information systems (GIS) as an alternative method for map data archives and as a resource management tool. Considerable effort has been devoted to the generation of tabular databases, such as the U.S. Department of Agriculture's SCS/S015 (Soil Survey Staff, 1983), to archive the large amounts of information that are collected in conjunction with mapping of natural resources in an easily retrievable manner.During the past 4 years the U.S. Geological Survey's EROS Data Center, in a cooperative effort with the Bureau of Land Management (BLM) and the Soil Conservation Service (SCS), developed a procedure that uses spatial and tabular databases to generate elevation, slope, aspect, and spectral map products that can be used during soil premapping. The procedure results in tabular data, residing in a database management system, that are indexed to the final soil delineations and help quantify soil map unit composition.The procedure was developed and tested on soil surveys on over 600 000 ha in Wyoming, Nevada, and Idaho. A transfer of technology from the EROS Data Center to the BLM will enable the Denver BLM Service Center to use this procedure in soil survey operations on BLM lands. Also underway is a cooperative effort between the EROS Data Center and SCS to define and evaluate maps that can be produced as derivatives of digital elevation data for 7.5-min quadrangle areas, such as those used during the premapping stage of the soil surveys mentioned above, the idea being to make such products routinely available.The procedure emphasizes the applications of digital elevation and spectral data to order-three soil surveys on rangelands, and will:Incorporate digital terrain and spectral data into a spatial database for soil surveys.Provide hardcopy products (that can be generated from digital elevation model and spectral data) that are useful during the soil pre-mapping process.Incorporate soil premaps into a spatial database that can be accessed during the soil survey process along with terrain and spectral data.Summarize useful quantitative information for soil mapping and for making interpretations for resource management.

Global digital data sets of soil type, soil texture, surface slope and other properties: Documentation of archived data tape

NASA Technical Reports Server (NTRS)

Staub, B.; Rosenzweig, C.; Rind, D.

1987-01-01

The file structure and coding of four soils data sets derived from the Zobler (1986) world soil file is described. The data were digitized on a one-degree square grid. They are suitable for large-area studies such as climate research with general circulation models, as well as in forestry, agriculture, soils, and hydrology. The first file is a data set of codes for soil unit, land-ice, or water, for all the one-degree square cells on Earth. The second file is a data set of codes for texture, land-ice, or water, for the same soil units. The third file is a data set of codes for slope, land-ice, or water for the same units. The fourth file is the SOILWRLD data set, containing information on soil properties of land cells of both Matthews' and Food and Agriculture Organization (FAO) sources. The fourth file reconciles land-classification differences between the two and has missing data filled in.

BOREAS HYD-1 Soil Hydraulic Properties

NASA Technical Reports Server (NTRS)

Hall, Forrest G. (Editor); Knapp, David E. (Editor); Kelly, Shaun F.; Stangel, David E.; Smith, David E. (Technical Monitor)

2000-01-01

The Boreal Ecosystem-Atmosphere Study (BOREAS) Hydrology (HYD)-1 team coordinated a program of data collection to measure and monitor soil properties in collaboration with other science team measurement needs. This data set contains soil hydraulic properties determined at the Northern Study Area (NSA) and Southern Study Area (SSA) flux tower sites based on analysis of in situ tension infiltrometer tests and laboratory-determined water retention from soil cores collected during the 1994-95 field campaigns. Results from this analysis are saturated hydraulic conductivity, and fitting parameters for the van Genuchten-Mualem soil hydraulic conductivity and water retention function at flux tower sites. The data are contained in tabular ASCII files. The HYD-01 soil hydraulic properties data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). The data files are available on a CD-ROM (see document number 20010000884).

Evaluation of Targeted Sequencing for Transcriptional Analysis of Archival Formalin-Fixed Paraffin-Embedded (FFPE) Samples

EPA Science Inventory

Next-generation sequencing provides unprecedented access to genomic information in archival FFPE tissue samples. However, costs and technical challenges related to RNA isolation and enrichment limit use of whole-genome RNA-sequencing for large-scale studies of FFPE specimens. Rec...

Peat Bog Archives: from human history, vegetation change and Holocene climate, to atmospheric dusts and trace elements of natural and anthropogenic origin

NASA Astrophysics Data System (ADS)

Shotyk, William

2010-05-01

For at least two centuries, peat has been recognized as an excellent archive of environmental change. William Rennie (1807), for example, interpreted stratigraphic changes in Scottish bogs not only in terms of natural changes in paleoclimate, but was also able to identify environmental changes induced by humans, namely deforestation and the hydrological impacts which result from such activities. The use of bogs as archives of climate change in the early 20th century was accelerated by studies of fossil plant remains such as those by Lewis in Scotland, and by systematic investigations of pollen grains pioneered by von Post in Sweden. In Denmark, Glob outlined the remarkably well-preserved remains of bog bodies and associated artefacts (of cloth, wood, ceramic and metal) in Danish bogs. In Britain, Godwin provided an introduction to the use of bogs as archives of human history, vegetation change, and Holocene climate, with a more recent survey provided by Charman. Recent decades have provided many mineralogical studies of peat and there is growing evidence that many silicate minerals, whether derived from the surrounding watershed or the atmosphere (soil-derived dusts and particles emitted from volcanoes), also are well preserved in anoxic peatland waters. Similarly, geochemical studies have shown that a long list of trace metals, of both natural and anthropogenic origin, also are remarkably well preserved in peat bogs. Thus, there is growing evidence that ombrotrophic (ie 'rain-fed') peat bogs are reliable archives of atmospheric deposition of a wide range of trace elements, including conservative, lithogenic metals such as Al, Sc, Ti, Y, Zr, Hf and the REE, but also the potentially toxic Class B, or 'heavy metals' such as Cu, Ag, Hg, Pb, Sb and Tl. When high quality measurements of these elements is combined with accurate radiometric age dating, it becomes possible to create high resolution reconstructions of atmospheric soil dust fluxes, ancient and modern metal pollution, and Holocene climate change.

Dose-Response Analysis of RNA-Seq Profiles in Archival Formalin-Fixed Paraffin-Embedded (FFPE) Samples.

EPA Science Inventory

Use of archival resources has been limited to date by inconsistent methods for genomic profiling of degraded RNA from formalin-fixed paraffin-embedded (FFPE) samples. RNA-sequencing offers a promising way to address this problem. Here we evaluated transcriptomic dose responses us...

Mining the archives: a cross-platform analysis of gene expression profiles in archival formalin-fixed paraffin-embedded (FFPE) tissue.

EPA Science Inventory

Formalin-fixed paraffin-embedded (FFPE) tissue samples represent a potentially invaluable resource for genomic research into the molecular basis of disease. However, use of FFPE samples in gene expression studies has been limited by technical challenges resulting from degradation...

A Method to Evaluate Genome-Wide Methylation in Archival Formalin-Fixed, Paraffin-Embedded Ovarian Epithelial Cells

PubMed Central

Li, Qiling; Li, Min; Ma, Li; Li, Wenzhi; Wu, Xuehong; Richards, Jendai; Fu, Guoxing; Xu, Wei; Bythwood, Tameka; Li, Xu; Wang, Jianxin; Song, Qing

2014-01-01

Background The use of DNA from archival formalin and paraffin embedded (FFPE) tissue for genetic and epigenetic analyses may be problematic, since the DNA is often degraded and only limited amounts may be available. Thus, it is currently not known whether genome-wide methylation can be reliably assessed in DNA from archival FFPE tissue. Methodology/Principal Findings Ovarian tissues, which were obtained and formalin-fixed and paraffin-embedded in either 1999 or 2011, were sectioned and stained with hematoxylin-eosin (H&E).Epithelial cells were captured by laser micro dissection, and their DNA subjected to whole genomic bisulfite conversion, whole genomic polymerase chain reaction (PCR) amplification, and purification. Sequencing and software analyses were performed to identify the extent of genomic methylation. We observed that 31.7% of sequence reads from the DNA in the 1999 archival FFPE tissue, and 70.6% of the reads from the 2011 sample, could be matched with the genome. Methylation rates of CpG on the Watson and Crick strands were 32.2% and 45.5%, respectively, in the 1999 sample, and 65.1% and 42.7% in the 2011 sample. Conclusions/Significance We have developed an efficient method that allows DNA methylation to be assessed in archival FFPE tissue samples. PMID:25133528

Digging Deep: how the convergence of national-scale and field-based soil core data shines a light on sustainability of wetland carbon sequestration

NASA Astrophysics Data System (ADS)

Windham-Myers, L.; Holmquist, J. R.; Sundquist, E. T.; Drexler, J. Z.; Bliss, N.

2016-12-01

Wetland soils have long been recognized as conditional archives of past environments, including vegetation structure, nutrient status, sediment supply and the variability in those factors. Both sedimentary processes and organic accretion processes form the soil matrix that identifies wetland soils as "hydric" while also providing archival insights. As repositories of information on net biogeochemical processes, their down-core and across-site structure can show both consistency and distinction. Through several related studies, we have been exploring the use of component-level U.S. Natural Resources Conservation Service (NRCS) Soil Survey data (SSURGO) to map carbon density to 1m depth across wetlands of the US, with an emphasis on coastal wetlands. To assess the accuracy of mapped carbon data from SSURGO, several field-generated datasets (public or compiled for the NASA-funded Blue Carbon Monitoring Project) have been extracted for key metrics such as dry bulk density (g/cc), organic carbon content (%C by combustion) and the combination, soil carbon density (g C /cc) with depth. These profiles indicate ecogeomorphic feedbacks of elevation, vegetation structure and biogeochemical processes through millennia, illustrating both resilience and shifts in behavior that constrain wetland extent as well as wetland function. National datasets such as SSURGO and validation datasets such as the EPA's National Wetland Condition Assessment (NWCA) and Louisiana's Coastwide Reference Monitoring System (CRMS) are publically available and have been underutilized for predicting and/or validating changes in wetland carbon dynamics. We have explored their use for interpretating and understanding changing carbon accretion rates, changing wetland extents through elevation gain or loss, and changing methane emissions. This talk will focus on insights for wetland carbon sequestration functions as determined by soil core structure, both for coastal settings and potentially for inland wetlands as well.

Analyzing legacy U.S. Geological Survey geochemical databases using GIS: applications for a national mineral resource assessment

USGS Publications Warehouse

Yager, Douglas B.; Hofstra, Albert H.; Granitto, Matthew

2012-01-01

This report emphasizes geographic information system analysis and the display of data stored in the legacy U.S. Geological Survey National Geochemical Database for use in mineral resource investigations. Geochemical analyses of soils, stream sediments, and rocks that are archived in the National Geochemical Database provide an extensive data source for investigating geochemical anomalies. A study area in the Egan Range of east-central Nevada was used to develop a geographic information system analysis methodology for two different geochemical datasets involving detailed (Bureau of Land Management Wilderness) and reconnaissance-scale (National Uranium Resource Evaluation) investigations. ArcGIS was used to analyze and thematically map geochemical information at point locations. Watershed-boundary datasets served as a geographic reference to relate potentially anomalous sample sites with hydrologic unit codes at varying scales. The National Hydrography Dataset was analyzed with Hydrography Event Management and ArcGIS Utility Network Analyst tools to delineate potential sediment-sample provenance along a stream network. These tools can be used to track potential upstream-sediment-contributing areas to a sample site. This methodology identifies geochemically anomalous sample sites, watersheds, and streams that could help focus mineral resource investigations in the field.

Archival policies and collections database for the Woods Hole Science Center's marine sediment samples

USGS Publications Warehouse

Buczkowski, Brian J.; Kelsey, Sarah A.

2007-01-01

The Woods Hole Science Center of the U.S. Geological Survey (USGS) has been an active member of the Woods Hole research community, Woods Hole, Massachusetts, for over 40 years. In that time there have been many projects that involved the collection of sediment samples conducted by USGS scientists and technicians for the research and study of seabed environments and processes. These samples were collected at sea or near shore and then brought back to the Woods Hole Science Center (WHSC) for analysis. While at the center, samples are stored in ambient temperature, refrigerated and freezing conditions ranging from +2º Celsius to -18º Celsius, depending on the best mode of preparation for the study being conducted or the duration of storage planned for the samples. Recently, storage methods and available storage space have become a major concern at the WHSC. The core and sediment archive program described herein has been initiated to set standards for the management, methods, and duration of sample storage. A need has arisen to maintain organizational consistency and define storage protocol. This handbook serves as a reference and guide to all parties interested in using and accessing the WHSC's sample archive and also defines all the steps necessary to construct and maintain an organized collection of geological samples. It answers many questions as to the way in which the archive functions.

Soil physics and chemistry at a medieval ridge and furrow site in northeastern Germany

NASA Astrophysics Data System (ADS)

Hirsch, Florian; van der Maaten-Theunissen, Marieke; van der Maaten, Ernst; Schneider, Anna; Raab, Alexandra; Raab, Thomas

2017-04-01

The usage of non-reversible ploughs, mainly during the Middle Ages and until historic times, led to the formation of ridge and furrow systems. Due to improvements of agricultural techniques, these historic agricultural sites were often abandoned and are now marginal land. The parallel ridges and furrows are usually, if not destroyed by later conventional ploughing, preserved in present-day forests. In northeastern Germany ridge and furrow systems are normally several decameters long and up to ten meters wide. The height difference between ridge top and furrow bottom is up to 50 centimeters and is expected to cause significant contrasts of soil properties and vegetation. Furthermore, due to the abandonment of sites with ridges and furrows, soils on these sites are unique archives for studies on fertilization, soil carbon dynamics and soil development. Therefore, we are characterizing soil physics (bulk density, saturated soil hydraulic conductivity, texture) and soil chemistry (soil acidity, carbon and nitrogen content) on a type location of historic ridges and furrows about 100 km northwest of Berlin.

DOE Office of Scientific and Technical Information (OSTI.GOV)

DeMott, PJ; Suski, KJ; Hill, TCJ

The first ever ice nucleating particle (INP) measurements to be collected at the Southern Great Plains site were made during a period from late April to June 2014, as a trial for possible longer-term measurements at the site. These measurements will also be used to lay the foundation for understanding and parameterizing (for cloud resolving modeling) the sources of these climatically important aerosols as well as to augment the existing database containing this knowledge. Siting the measurements during the spring was intended to capture INP sources in or to this region from plant, soil, dust transported over long distances, biomassmore » burning, and pollution aerosols at a time when they may influence warm-season convective clouds and precipitation. Data have been archived of real-time measurements of INP number concentrations as a function of processing conditions (temperature and relative humidity) during 18 days of sampling that spanned two distinctly different weather situations: a warm, dry and windy period with regional dust and biomass burning influences in early May, and a cooler period of frequent precipitation during early June. Precipitation delayed winter wheat harvesting, preventing intended sampling during that perturbation on atmospheric aerosols. INP concentrations were highest and most variable at all temperatures in the dry period, where we attribute the INP activity primarily to soil dust emissions. Additional offline INP analyses are underway to extend the characterization of INP to cover the entire mixed phase cloud regime from -5°C to -35°C during the full study. Initial comparisons between methods on four days show good agreement and excellent future promise. The additional offline immersion freezing data will be archived as soon as completed under separate funding. Analyses of additional specialized studies for specific attribution of INP to biological and smoke sources are continuing via the National Science Foundation and National Aeronautics and Space Administration funding that helped support instrumentation used for the measurements described herein. Aerosol Observing System aerosol data will be vital to the interpretation and parameterization of results as part of analyses for publications in preparation.« less

Atmospheric Fluoroform (CHF3, HFC-23) at Cape Grim, Tasmania (1978-1995)

DOE Data Explorer

Oram, D. E. [University of East Anglia, Norwich, United Kingdom; Sturges, W. T. [University of East Anglia, Norwich, United Kingdom; Penkett, S. A. [University of East Anglia, Norwich, United Kingdom; McCulloch, A. [ICI Chemicals and Polymers, Ltd., Cheshire, United Kingdom; Fraser, P. J. [CRC for Southern Hemisphere Meteorology, Victoria, Australia

2000-10-01

The sampling and analytical methods are described more fully in Oram et al. (1998). In summary, air samples were taken from the archive of Cape Grim, Tasmania (41oS, 145oE) air samples collected from 1978 through 1995. Comparisons of CFC-11, CFC-12, CFC-113, CH3CCl3, and CH4 data between archive samples and corresponding in-situ samples for the same dates confirm that the archive samples are both representative and stable over time. Samples were analyzed by gas chromatography-mass spectrometry (GC-MS), using a KCl-passivated alumina PLOT column. Fluoroform was monitored on mass 69 (CF3+). The analytical precision (one standard deviation of the mean) for two or three replicate analyses was typically ± 1% of the mean measured value. The overall uncertainty of the observed data is ± 10%, taking into account uncertainties in the preparation of the primary standards, the purity of the fluoroform used to make the primary standards, as well as the analytical precision.

NHEXAS PHASE I ARIZONA STUDY--STANDARD OPERATING PROCEDURE FOR ARCHIVE PROCEDURE FOR STUDY SAMPLES (UA-G-4.0)

EPA Science Inventory

The purpose of this SOP is to outline the archive/custody guidelines used by the NHEXAS Arizona research project. This procedure was followed to maintain and locate samples, extracts, tracings and hard copy results after laboratory analysis during the Arizona NHEXAS project and ...

Last-Century Increases in Intrinsic Water-Use Efficiency of Grassland Communities Have Occurred over a Wide Range of Vegetation Composition, Nutrient Inputs, and Soil pH.

PubMed

Köhler, Iris H; Macdonald, Andy J; Schnyder, Hans

2016-02-01

Last-century climate change has led to variable increases of the intrinsic water-use efficiency (Wi; the ratio of net CO2 assimilation to stomatal conductance for water vapor) of trees and C3 grassland ecosystems, but the causes of the variability are not well understood. Here, we address putative drivers underlying variable Wi responses in a wide range of grassland communities. Wi was estimated from carbon isotope discrimination in archived herbage samples from 16 contrasting fertilizer treatments in the Park Grass Experiment, Rothamsted, England, for the 1915 to 1929 and 1995 to 2009 periods. Changes in Wi were analyzed in relation to nitrogen input, soil pH, species richness, and functional group composition. Treatments included liming as well as phosphorus and potassium additions with or without ammonium or nitrate fertilizer applications at three levels. Wi increased between 11% and 25% (P < 0.001) in the different treatments between the two periods. None of the fertilizers had a direct effect on the change of Wi (ΔWi). However, soil pH (P < 0.05), species richness (P < 0.01), and percentage grass content (P < 0.01) were significantly related to ΔWi. Grass-dominated, species-poor plots on acidic soils showed the largest ΔWi (+14.7 μmol mol(-1)). The ΔWi response of these acidic plots was probably related to drought effects resulting from aluminum toxicity on root growth. Our results from the Park Grass Experiment show that Wi in grassland communities consistently increased over a wide range of nutrient inputs, soil pH, and plant community compositions during the last century. © 2016 American Society of Plant Biologists. All Rights Reserved.

Last-Century Increases in Intrinsic Water-Use Efficiency of Grassland Communities Have Occurred over a Wide Range of Vegetation Composition, Nutrient Inputs, and Soil pH1[OPEN

PubMed Central

Köhler, Iris H.; Macdonald, Andy J.; Schnyder, Hans

2016-01-01

Last-century climate change has led to variable increases of the intrinsic water-use efficiency (Wi; the ratio of net CO2 assimilation to stomatal conductance for water vapor) of trees and C3 grassland ecosystems, but the causes of the variability are not well understood. Here, we address putative drivers underlying variable Wi responses in a wide range of grassland communities. Wi was estimated from carbon isotope discrimination in archived herbage samples from 16 contrasting fertilizer treatments in the Park Grass Experiment, Rothamsted, England, for the 1915 to 1929 and 1995 to 2009 periods. Changes in Wi were analyzed in relation to nitrogen input, soil pH, species richness, and functional group composition. Treatments included liming as well as phosphorus and potassium additions with or without ammonium or nitrate fertilizer applications at three levels. Wi increased between 11% and 25% (P < 0.001) in the different treatments between the two periods. None of the fertilizers had a direct effect on the change of Wi (ΔWi). However, soil pH (P < 0.05), species richness (P < 0.01), and percentage grass content (P < 0.01) were significantly related to ΔWi. Grass-dominated, species-poor plots on acidic soils showed the largest ΔWi (+14.7 μmol mol−1). The ΔWi response of these acidic plots was probably related to drought effects resulting from aluminum toxicity on root growth. Our results from the Park Grass Experiment show that Wi in grassland communities consistently increased over a wide range of nutrient inputs, soil pH, and plant community compositions during the last century. PMID:26620525

Correlations between soil magnetic susceptibility and the content of particular elements as a reflection of pollution level, land use and parent rocks

NASA Astrophysics Data System (ADS)

Rachwał, Marzena; Magiera, Tadeusz; Bens, Oliver; Kardel, Kati

2015-04-01

Magnetic susceptibility is a worldwide used measure of (ferri)magnetic minerals occurring in soils, sediments and dusts. In soils, these minerals are of various origin: air-derived particulate pollutions, parent rocks or pedogenesis. Human activity causes different changes in the content of magnetic minerals as well as their spatial and vertical distribution in soil profiles. Magnetic minerals are characterized by an affinity for other elements occurring in the soil, so positive correlations between magnetic susceptibility and particular elements like macrocomponents or heavy metals often occurs. The archival soil samples collected from different soil horizons in the territory of the Free State of Saxony (Germany) were subjected to the magnetic susceptibility measurements using Bartington MS2B. Additionally, samples were chemically analyzed by the S Helmholtz Centre Potsdam, GFZ German Research Centre for Geosciences in Potsdam. Values of magnetic susceptibility varied from 9.3 to 1382 ×10-8 m3/kg in organic soil horizon and from 0.1 to 2105 ×10-8 m3/kg in dipper layers. Calculated correlation coefficients between magnetic susceptibility and some elements indicate significant relationships characteristic for different factors influenced soil properties (pollution level, land use and parent rocks). The northern part of Saxony is divided by the Elbe into two parts: east part with loose sedimentary rocks and the west one with more solid loess bedrock enriched by spectrum of elements from the Ore Mountains. Correlations between magnetic susceptibility and Ca, Fe, Mn, and Zn were stated in the eastern, while soil magnetic susceptibility of the western part revealed a correlation with Fe, P, Cd, Cu, Pb, Zn, Mo, U, V, and W. Taking into account influences of industry and urbanization, soil magnetic susceptibility is enhanced in the areas with higher population density comparing with rural sites. In the area of Hoyerswerda and Weisswasser with low magnetic natural background (sand) the load of (ferri)magnetic minerals explained by high magnetic susceptibility values as a result of high pollution level, shows the considerable correlations with Na, Ca, Fe, Mn, Zn, B, Be, V. What is more, the soil magnetic susceptibility, developed on different geological bedrocks, correlates with their natural geochemistry bound in the rock and connected with their ferromagnetic minerals (such magnetite and titanomagnetite present in slate, phyllite, mica schist). In that case the magnetic susceptibility correlates with such elements as: Fe, Mn, Ni, B and V. The soils in the south-eastern Saxony close to the border tri-point of Germany, Poland and the Czech Republic, reveal a correlation of magnetic susceptibility with Cd and As content. It can also be caused by power industry in Zittau, however they are developed on basalts and phonolithes in background that produce also strong magnetic signal of geogenic origin. All the statements made above are usually not so clear, since geogenic processes and anthropogenic influences often overlay in the soil.

Seabird tissue archival and monitoring project: Protocol for collecting and banking seabird eggs

USGS Publications Warehouse

Weston-York, Geoff; Porter, Barbara J.; Pugh, Rebecca S.; Roseneau, David G.; Simac, Kristin S.; Becker, Paul R.; Thorsteinson, Lyman K.; Wise, Stephen A.

2001-01-01

Archiving biological and environmental samples for retrospective analysis is a major component of systematic environmental monitoring. The long-term storage of carefully selected, representative samples in an environmental specimen bank is an important complement to the real-time monitoring of the environment. These archived samples permit:The use of subsequently developed innovative analytical technology that was not available at the time the samples were archived, for clear state-of-art identification an~ quantification of analytes of interest,The identification and quantification of analytes that are of subsequent interest but that were not of interest at the time the samples were archived, andThe comparison of present and past analytical techniques and values, providing continued credibility of past analytical values, and allowing flexibility in environmental monitoring programs.Seabirds, including albatrosses, pelicans, cormorants, terns, kittiwakes, murres, guillemots, and puffins spend most of their lives at sea and have special adaptations for feeding in the marine environment, including the ability to excrete the excess salt obtained from ingesting seawater. Many species nest in dense groups (colonies) on steep, precipitous sea-cliffs and headlands.Seabirds are long-lived and slow to mature. They occupy high positions in the marine food web and are considered sensitive indicators for the marine environment (prey includes krill, small fish, and squid). Breeding success, timing of nesting, diets, and survival rates may provide early indications of changing environmental conditions (e.g., see Hatch et aI., 1993). Chemical analysis of seabird tissues, including egg contents, can be particularly useful in determining whether contaminants (and potential biological effects) associated with human industrial activities, such as offshore petroleum and mineral exploration and development, are accumulating in marine environments. The collection and archival of seabird tissues over a period of several years will be a resource for future analyses, providing samples that can be used to determine historical baseline contaminant levels.

Leaf Wax δ13C Varies with Elevation in the Peruvian Andes and Western Amazonia

NASA Astrophysics Data System (ADS)

Wu, M. S.; Feakins, S. J.; Ponton, C.; Peters, T.; West, A. J.; Galy, V.; Bentley, L. P.; Salinas, N.; Shenkin, A.; Martin, R.; Asner, G. P.; Malhi, Y.

2015-12-01

Plant leaf wax carbon isotopic composition (δ13Cwax) reflects the net isotopic effects associated with diffusion into the leaf, fixation of carbon by Rubisco and biosynthesis of individual leaf wax biochemicals. As declining pCO2 with elevation affects the first two fractionations, we expect to find an isotopic gradient in δ13Cwax, if the fractionation of leaf wax biosynthesis is constant. To test this, we report δ13Cwax values from 500 samples of leaves collected by tree-climbers from the upper canopy from 9 forest-inventory plots spanning a 3.5km elevation transect in the Peruvian Andes and western Amazonia during the CHAMBASA field campaign. These samples provide a unique opportunity to study the relationship between δ13Cwax and pCO2 in diverse species across this remote tropical montane forest and lowland rainforest. The very wet climate throughout (2-5 m rainfall per year) minimizes fractionation effects due to stomatal restrictions (i.e. water use efficiency) that may be an important factor elsewhere. Preliminary results show δ13Cwax values on average increase with elevation by ~1.5‰/km, a trend consistent with bulk plant δ13C in previous studies. The mean epsilon between bulk and C29 n-alkane is -7.3±2.2‰. Inter-sample differences are large on the order of 10‰. Shaded leaves and understory leaves are found to be depleted relative to sunlit leaves, presumably due to a lower photosynthetic rate and use of respired CO2 in the understory. C29 n-alkanes are on average ~2.5‰ more depleted than C30 n-alkanoic acids, indicating fractionation during selective decarboxylation. We further compare results from plants with soil and river sediments to provide insights into how leaf wax signals are archived in soils and exported from the landscape. We find a ~1.4‰/km gradient in forest soils similar to plants. We observe a ~2‰ offset between C29 n-alkane in plant leaves and in soils across the elevation profile, which is likely a signal of degradation. Suspended sediments from the Kosñipata and Madre de Dios Rivers draining this region show δ13Cwax values aligned with soils from the mean elevation of the catchment, suggesting soils as the sources of waxes exported in rivers, with ages on average 400-2,000 years revealed by compound specific radiocarbon analysis.

Microbial Community Dynamics from Permafrost Across the Pleistocene-Holocene Boundary and Response to Abrupt Climate Change

NASA Astrophysics Data System (ADS)

Hammad, A.; Mahony, M.; Froese, D. G.; Lanoil, B. D.

2014-12-01

Earth is currently undergoing rapid warming similar to that observed about 10,000 years ago at the end of the Pleistocene. We know a considerable amount about the adaptations and extinctions of mammals and plants at the Pleistocene/Holocene (P/H) boundary, but relatively little about changes at the microbial level. Due to permafrost soils' freezing anoxic conditions, they act as microbial diversity archives allowing us to determine how microbial communities adapted to the abrupt warming at the end of P. Since microbial community composition only helps differentiate viable and extant microorganisms in frozen permafrost, microbial activity in thawing permafrost must be investigated to provide a clear understanding of microbial response to climate change. Current increased temperatures will result in warming and potential thaw of permafrost and release of stored organic carbon, freeing it for microbial utilization; turning permafrost into a carbon source. Studying permafrost viable microbial communities' diversity and activity will provide a better understanding of how these microorganisms respond to soil edaphic variability due to climate change across the P/H boundary, providing insight into the changes that the soil community is currently undergoing in this modern era of rapid climate change. Modern soil, H and P permafrost cores were collected from Lucky Lady II site outside Dawson City, Yukon. 16S rRNA high throughput sequencing of permafrost DNA showed the same trends for total and viable community richness and diversity with both decreasing with permafrost depth and only the richness increasing in mid and early P. The modern, H and P soils had 50.9, 33.9, and 27.3% unique viable species and only 14% of the total number of viable species were shared by all soils. Gas flux measurements of thawed permafrost showed metabolic activity in modern and permafrost soils, aerobic CH­­4 consumption in modern, some H and P soils, and anaerobic CH­­4 production in one H sample. Soil chemistry analysis showed that older permafrost, P, had higher pH, lower total nitrogen, ammonium, and organic carbon than younger permafrost, H.

Application of Synchrotron Microprobe Methods to Solid-Phase Speciation of Metals and Metalloids in House Dust

DOE Office of Scientific and Technical Information (OSTI.GOV)

S Walker; H Jamieson; P Rasmussen

2011-12-31

Determination of the source and form of metals in house dust is important to those working to understand human and particularly childhood exposure to metals in residential environments. We report the development of a synchrotron microprobe technique for characterization of multiple metal hosts in house dust. We have applied X-ray fluorescence for chemical characterization and X-ray diffraction for crystal structure identification using microfocused synchrotron X-rays at a less than 10 {micro}m spot size. The technique has been evaluated by application to archived house dust samples containing elevated concentrations of Pb, Zn, and Ba in bedroom dust, and Pb and Asmore » in living room dust. The technique was also applied to a sample of soil from the corresponding garden to identify linkages between indoor and outdoor sources of metals. Paint pigments including white lead (hydrocerussite) and lithopone (wurtzite and barite) are the primary source of Pb, Zn, and Ba in bedroom dust, probably related to renovation activity in the home at the time of sampling. The much lower Pb content in the living room dust shows a relationship to the exterior soil and no specific evidence of Pb and Zn from the bedroom paint pigments. The technique was also successful at confirming the presence of chromated copper arsenate treated wood as a source of As in the living room dust. The results of the study have confirmed the utility of this approach in identifying specific metal forms within the dust.« less

Enantiomer fractions of chlordane components in sediment from U.S. Geological Survey sites in lakes and rivers

USGS Publications Warehouse

Ulrich, E.M.; Foreman, W.T.; Van Metre, P.C.; Wilson, J.T.; Rounds, S.A.

2009-01-01

Spatial, temporal, and sediment-type trends in enantiomer signatures were evaluated for cis- and trans-chlordane (CC, TC) in archived core, suspended, and surficial-sediment samples from six lake, reservoir, and river sites across the United States. The enantiomer fractions (EFs) measured in these samples are in good agreement with those reported for sediment, soil, and air samples in previous studies. The chlordane EFs were generally close to the racemic value of 0.5, with CC values ranging from 0.493 to 0.527 (usually >0.5) and TC values from 0.463 to 0.53 (usually <0.5). EF changes with core depth were detected for TC and CC in some cores, with the most non-racemic values near the top of the core. Surficial and suspended sediments generally have EF values similar to the top core layers but are often more non-racemic, indicating that enantioselective degradation is occurring before soils are eroded and deposited into bottom sediments. We hypothesize that rapid losses (desorption or degradation) from suspended sediments of the more bioavailable chlordane fraction during transport and initial deposition could explain the apparent shift to more racemic EF values in surficial and top core sediments. Near racemic CC and TC in the core profiles suggest minimal alteration of chlordane from biotic degradation, unless it is via non-enantioselective processes. EF values for the heptachlor degradate, heptachlor epoxide (HEPX), determined in surficial sediments from one location only were always non-racemic (EF ??? 0.66), were indicative of substantial biotic processing, and followed reported EF trends.

Getting something for nothing: Regeneration of peptide signals from apparently exhausted MALDI samples by “waterboarding"

USDA-ARS?s Scientific Manuscript database

An often cited advantage of MALDI-MS is the ability to archive and reuse sample plates after the initial analysis is complete. However, experience demonstrates that the peptide ion signals decay rapidly as the number of laser shots becomes large. Thus, the signal level obtainable from an archived sa...

U.S.-MEXICO BORDER PROGRAM ARIZONA BORDER STUDY--STANDARD OPERATING PROCEDURE FOR ARCHIVE PROCEDURE FOR STUDY SAMPLES (UA-G-4.0)

EPA Science Inventory

The purpose of this SOP is to outline the archive/custody guidelines used by the Arizona Border Study. This procedure was followed to maintain and locate samples, extracts, tracings and hard copy results after laboratory analysis during the Arizona NHEXAS project and the Border ...

Potential concerns with analytical methods used for the detection of Batrachochytrium salamandrivorans from archived DNA of amphibian swab samples, Oregon, USA

Treesearch

Deborah D. Iwanowicz; William B. Schill; Deanna H. Olson; Michael J. Adams; Christine Densmore; R. Scott Cornman; Cynthia Adams; Jr. Figiel; Chauncey W. Anderson; Andrew R. Blaustein; Tara Chestnut

2017-01-01

We report on the results of surveillance for the salamander chytrid fungus, Batrachochytrium salamandrivorans (Bsal). Two samples from archived DNA used in a previous chytrid study in Oregon were Bsal-positive, alerting us to the first potential finding of this pathogen in North America, infecting American...

Antibiotic Resistance and the Biology of History.

PubMed

Landecker, Hannah

2016-12-01

Beginning in the 1940s, mass production of antibiotics involved the industrial-scale growth of microorganisms to harvest their metabolic products. Unfortunately, the use of antibiotics selects for resistance at answering scale. The turn to the study of antibiotic resistance in microbiology and medicine is examined, focusing on the realization that individual therapies targeted at single pathogens in individual bodies are environmental events affecting bacterial evolution far beyond bodies. In turning to biological manifestations of antibiotic use, sciences fathom material outcomes of their own previous concepts. Archival work with stored soil and clinical samples produces a record described here as 'the biology of history': the physical registration of human history in bacterial life. This account thus foregrounds the importance of understanding both the materiality of history and the historicity of matter in theories and concepts of life today.

Antibiotic Resistance and the Biology of History

PubMed Central

2015-01-01

Beginning in the 1940s, mass production of antibiotics involved the industrial-scale growth of microorganisms to harvest their metabolic products. Unfortunately, the use of antibiotics selects for resistance at answering scale. The turn to the study of antibiotic resistance in microbiology and medicine is examined, focusing on the realization that individual therapies targeted at single pathogens in individual bodies are environmental events affecting bacterial evolution far beyond bodies. In turning to biological manifestations of antibiotic use, sciences fathom material outcomes of their own previous concepts. Archival work with stored soil and clinical samples produces a record described here as ‘the biology of history’: the physical registration of human history in bacterial life. This account thus foregrounds the importance of understanding both the materiality of history and the historicity of matter in theories and concepts of life today. PMID:28458609

Soil sampling kit and a method of sampling therewith

DOEpatents

Thompson, Cyril V.

1991-01-01

A soil sampling device and a sample containment device for containing a soil sample is disclosed. In addition, a method for taking a soil sample using the soil sampling device and soil sample containment device to minimize the loss of any volatile organic compounds contained in the soil sample prior to analysis is disclosed. The soil sampling device comprises two close fitting, longitudinal tubular members of suitable length, the inner tube having the outward end closed. With the inner closed tube withdrawn a selected distance, the outer tube can be inserted into the ground or other similar soft material to withdraw a sample of material for examination. The inner closed end tube controls the volume of the sample taken and also serves to eject the sample. The soil sample containment device has a sealing member which is adapted to attach to an analytical apparatus which analyzes the volatile organic compounds contained in the sample. The soil sampling device in combination with the soil sample containment device allow an operator to obtain a soil sample containing volatile organic compounds and minimizing the loss of the volatile organic compounds prior to analysis of the soil sample for the volatile organic compounds.

Soil sampling kit and a method of sampling therewith

DOEpatents

Thompson, C.V.

1991-02-05

A soil sampling device and a sample containment device for containing a soil sample is disclosed. In addition, a method for taking a soil sample using the soil sampling device and soil sample containment device to minimize the loss of any volatile organic compounds contained in the soil sample prior to analysis is disclosed. The soil sampling device comprises two close fitting, longitudinal tubular members of suitable length, the inner tube having the outward end closed. With the inner closed tube withdrawn a selected distance, the outer tube can be inserted into the ground or other similar soft material to withdraw a sample of material for examination. The inner closed end tube controls the volume of the sample taken and also serves to eject the sample. The soil sample containment device has a sealing member which is adapted to attach to an analytical apparatus which analyzes the volatile organic compounds contained in the sample. The soil sampling device in combination with the soil sample containment device allows an operator to obtain a soil sample containing volatile organic compounds and minimizing the loss of the volatile organic compounds prior to analysis of the soil sample for the volatile organic compounds. 11 figures.

Plant traits, productivity, biomass and soil properties from forest sites in the Pacific Northwest, 1999–2014

PubMed Central

Berner, Logan T.; Law, Beverly E.

2016-01-01

Plant trait measurements are needed for evaluating ecological responses to environmental conditions and for ecosystem process model development, parameterization, and testing. We present a standardized dataset integrating measurements from projects conducted by the Terrestrial Ecosystem Research and Regional Analysis- Pacific Northwest (TERRA-PNW) research group between 1999 and 2014 across Oregon and Northern California, where measurements were collected for scaling and modeling regional terrestrial carbon processes with models such as Biome-BGC and the Community Land Model. The dataset contains measurements of specific leaf area, leaf longevity, leaf carbon and nitrogen for 35 tree and shrub species derived from more than 1,200 branch samples collected from over 200 forest plots, including several AmeriFlux sites. The dataset also contains plot-level measurements of forest composition, structure (e.g., tree biomass), and productivity, as well as measurements of soil structure (e.g., bulk density) and chemistry (e.g., carbon). Publically-archiving regional datasets of standardized, co-located, and geo-referenced plant trait measurements will advance the ability of earth system models to capture species-level climate sensitivity at regional to global scales. PMID:26784559

Plant traits, productivity, biomass and soil properties from forest sites in the Pacific Northwest, 1999–2014

DOE PAGES

Berner, Logan T.; Law, Beverly E.

2016-01-19

Plant trait measurements are needed for evaluating ecological responses to environmental conditions and for ecosystem process model development, parameterization, and testing. Here, we present a standardized dataset integrating measurements from projects conducted by the Terrestrial Ecosystem Research and Regional Analysis- Pacific Northwest (TERRA-PNW) research group between 1999 and 2014 across Oregon and Northern California, where measurements were collected for scaling and modeling regional terrestrial carbon processes with models such as Biome-BGC and the Community Land Model. The dataset contains measurements of specific leaf area, leaf longevity, leaf carbon and nitrogen for 35 tree and shrub species derived from more thanmore » 1,200 branch samples collected from over 200 forest plots, including several AmeriFlux sites. The dataset also contains plot-level measurements of forest composition, structure (e.g., tree biomass), and productivity, as well as measurements of soil structure (e.g., bulk density) and chemistry (e.g., carbon). Publically-archiving regional datasets of standardized, co-located, and geo-referenced plant trait measurements will advance the ability of earth system models to capture species-level climate sensitivity at regional to global scales.« less

Sampling and Chemical Analysis of Potable Water for ISS Expeditions 12 and 13

NASA Technical Reports Server (NTRS)

Straub, John E. II; Plumlee, Deborah K.; Schultz, John R.

2007-01-01

The crews of Expeditions 12 and 13 aboard the International Space Station (ISS) continued to rely on potable water from two different sources, regenerated humidity condensate and Russian ground-supplied water. The Space Shuttle launched twice during the 12- months spanning both expeditions and docked with the ISS for delivery of hardware and supplies. However, no Shuttle potable water was transferred to the station during either of these missions. The chemical quality of the ISS onboard potable water supplies was verified by performing ground analyses of archival water samples at the Johnson Space Center (JSC) Water and Food Analytical Laboratory (WAFAL). Since no Shuttle flights launched during Expedition 12 and there was restricted return volume on the Russian Soyuz vehicle, only one chemical archive potable water sample was collected with U.S. hardware and returned during Expedition 12. This sample was collected in March 2006 and returned on Soyuz 11. The number and sensitivity of the chemical analyses performed on this sample were limited due to low sample volume. Shuttle flights STS-121 (ULF1.1) and STS-115 (12A) docked with the ISS in July and September of 2006, respectively. These flights returned to Earth with eight chemical archive potable water samples that were collected with U.S. hardware during Expedition 13. The average collected volume increased for these samples, allowing full chemical characterization to be performed. This paper presents a discussion of the results from chemical analyses performed on Expeditions 12 and 13 archive potable water samples. In addition to the results from the U.S. samples analyzed, results from pre-flight samples of Russian potable water delivered to the ISS on Progress vehicles and in-flight samples collected with Russian hardware during Expeditions 12 and 13 and analyzed at JSC are also discussed.

Antibody against infectious salmon anaemia virus among feral Atlantic salmon (Salmo salar)

USGS Publications Warehouse

Cipriano, R.C.

2009-01-01

Archived sera from Atlantic salmon (Salmo salar) that returned to the Penobscot River (Maine), Merrimack River (Massachusetts), and Connecticut River (in Massachusetts) from 1995 to 2002 were analysed for antibodies against infectious salmon anaemia virus (ISAV) using an enzyme-linked immunosorbent assay (ELISA). Up to 60 samples were archived per river system per year. In a given year, the number of fish sampled by ELISA for ISAV antibodies in the Penobscot River ranged from 2.9 to 11.2, and the range of salmon sampled in the Merrimack River and the Connecticut River was 31.3-100 and 20.0-67.5, respectively. Archived sera were not available for the 1995 and 2002 year classes from the Connecticut River. In all, 1141 samples were processed; 14 serum samples tested positive for antibodies to ISAV. In the Penobscot River, serum from one fish tested positive in each of the 1995 and 1999 year-class returns, and sera from two fish tested positive in the 1998 returns. In the Merrimack River, sera from four fish tested positive in each of the 1996 and 1997 returns, and sera from two fish were positive in the 2002 return. None of the archived sera from Atlantic salmon that returned to the Connecticut River tested positive. ?? 2009 United States Government, Department of the Interior.

Analytical test results for archived core composite samples from tanks 241-TY-101 and 241-TY-103

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beck, M.A.

1993-07-16

This report describes the analytical tests performed on archived core composite samples form a 1.085 sampling of the 241-TY-101 (101-TY) and 241-TY-103 (103-TY) single shell waste tanks. Both tanks are suspected of containing quantities of ferrocyanide compounds, as a result of process activities in the late 1950`s. Although limited quantities of the composite samples remained, attempts were made to obtain as much analytical information as possible, especially regarding the chemical and thermal properties of the material.

Chorionic Villus Sampling (CVS)

MedlinePlus

... Careers Archives Health Topics Pregnancy Before or between pregnancies Nutrition, weight & fitness Prenatal care Is it safe? Labor & ... Report Cards Careers Archives Pregnancy Before or between pregnancies Nutrition, weight & fitness Prenatal care Is it safe? Labor & ...

Sample Curation in Support of the OSIRIS-REx Asteroid Sample Return Mission

NASA Technical Reports Server (NTRS)

Righter, Kevin; Nakamura-Messenger, Keiko

2017-01-01

The OSIRIS-REx asteroid sample return mission launched to asteroid Bennu Sept. 8, 2016. The spacecraft will arrive at Bennu in late 2019, orbit and map the asteroid, and perform a touch and go (TAG) sampling maneuver in July 2020. After sample is stowed and confirmed the spacecraft will return to Earth, and the sample return capsule (SRC) will land in Utah in September 2023. Samples will be recovered from Utah [2] and then transported and stored in a new sample cleanroom at NASA Johnson Space Center in Houston [3]. The materials curated for the mission are described here. a) Materials Archive and Witness Plate Collection: The SRC and TAGSAM were built between March 2014 and Summer of 2015, and instruments (OTES,OVIRS, OLA, OCAMS, REXIS) were integrated from Summer 2015 until May 2016. A total of 395 items were received for the materials archive at NASA-JSC, with archiving finishing 30 days after launch (with the final archived items being related to launch operations)[4]. The materials fall into several general categories including metals (stainless steel, aluminum, titanium alloys, brass and BeCu alloy), epoxies, paints, polymers, lubricants, non-volatile-residue samples (NVR), sapphire, and various miscellaneous materials. All through the ATLO process (from March 2015 until late August 2016) contamination knowledge witness plates (Si wafer and Al foil) were deployed in the various cleanrooms in Denver and KSC to provide an additional record of particle counts and volatiles that is archived for current and future scientific studies. These plates were deployed in roughly monthly increments with each unit containing 4 Si wafers and 4 Al foils. We archived 128 individual witness plates (64 Si wafers and 64 Al foils); one of each witness plate (Si and Al) was analyzed immediately by the science team after archiving, while the remaining 3 of each are archived indefinitely. Information about each material archived is stored in an extensive database at NASA-JSC, and key summary information for each will be presented in an online catalog. b) Bulk Asteroid sample: The Touch and Go Sampling Mechanism (TAGSAM) head will contain up to 1.5 kg of asteroid material. Upon return to Earth, the TAGSAM head with the sample canister will be subjected to a nitrogen purge and then opened in a nitrogen cabinet in Houston. Once the TAGSAM head is removed from the canister, it will be dis-assembled slowly and carefully under nitrogen until the sample can be removed for processing in a dedicated nitrogen glovebox. Bennu surface samples are expected to be sub-cm sized, based on thermal infrared and radar polarization ratio measurements [1]. The upper limit on material collected by the TAGSAM head is 2 cm. Therefore, we will be prepared to handle, subdivide, and characterize materials of a wide grain size (from 10 ?m to 2 cm), and for both organic (UV fluorescence) and inorganic (SEM, FTIR, optical) properties. Representative portions of the bulk sample will be prepared for JAXA (0.5 %; see also [5]) and Canadian Space Agency (4%), with the remaining divided between the science team (<25%) and archived for future studies (NASA) (>75%). c) Contact Pad samples: The base of the TAGSAM head contains 24 contact pads that are designed to trap the upper surface layer of material and thus offer an opportunity to study asteroid samples that have resided at the very top surface of the regolith. Asteroid material is trapped on the pads in spring steel Velcro hooks, and material will have to be removed from these pads by curation specialists in the lab. d) Hardware: Some canister and SRC hardware items will contain information that will be important to understanding the collected samples, including the canister gas filter, temperature strips, flight witness plates, and the TAGSAM and canister parts that might have adhering dust grains. Some challenges remaining for both bulk sample and contact pad samples include: i) working with intermediate size range (200 to 500 micron) samples - a size range NASA has not previously worked in such detail; ii) techniques for removal of contact pad material from the spring steel hooks, iii) static electrical effects of dust sized particles during sample handling and curation is likely to be significant, and iv) the TAGSAM head and associated canister hardware will undoubtedly be coated with fine adhering dust grains from Bennu. In the case of collection of a large bulk sample mass, the adhering dust grains may be of lower priority. If a small sample mass is returned, the adhering dust may attain a higher priority, so recovery of adhering dust grains is an additional challenge to consider. In the year leading up to sample return we plan a variety of sample handling rehearsals that will enables the curation team to be prepared for many new aspects posed by this sample suite.

Characterizing the LANDSAT Global Long-Term Data Record

NASA Technical Reports Server (NTRS)

Arvidson, T.; Goward, S. N.; Williams, D. L.

2006-01-01

The effects of global climate change are fast becoming politically, sociologically, and personally important: increasing storm frequency and intensity, lengthening cycles of drought and flood, expanding desertification and soil salinization. A vital asset in the analysis of climate change on a global basis is the 34-year record of Landsat imagery. In recognition of its increasing importance, a detailed analysis of the Landsat observation coverage within the US archive was commissioned. Results to date indicate some unexpected gaps in the US-held archive. Fortunately, throughout the Landsat program, data have been downlinked routinely to International Cooperator (IC) ground stations for archival, processing, and distribution. These IC data could be combined with the current US holdings to build a nearly global, annual observation record over this 34-year period. Today, we have inadequate information as to which scenes are available from which IC archives. Our best estimate is that there are over four million digital scenes in the IC archives, compared with the nearly two million scenes held in the US archive. This vast pool of Landsat observations needs to be accurately documented, via metadata, to determine the existence of complementary scenes and to characterize the potential scope of the global Landsat observation record. Of course, knowing the extent and completeness of the data record is but the first step. It will be necessary to assure that the data record is easy to use, internally consistent in terms of calibration and data format, and fully accessible in order to fully realize its potential.

Assessment the effect of homogenized soil on soil hydraulic properties and soil water transport

NASA Astrophysics Data System (ADS)

Mohawesh, O.; Janssen, M.; Maaitah, O.; Lennartz, B.

2017-09-01

Soil hydraulic properties play a crucial role in simulating water flow and contaminant transport. Soil hydraulic properties are commonly measured using homogenized soil samples. However, soil structure has a significant effect on the soil ability to retain and to conduct water, particularly in aggregated soils. In order to determine the effect of soil homogenization on soil hydraulic properties and soil water transport, undisturbed soil samples were carefully collected. Five different soil structures were identified: Angular-blocky, Crumble, Angular-blocky (different soil texture), Granular, and subangular-blocky. The soil hydraulic properties were determined for undisturbed and homogenized soil samples for each soil structure. The soil hydraulic properties were used to model soil water transport using HYDRUS-1D.The homogenized soil samples showed a significant increase in wide pores (wCP) and a decrease in narrow pores (nCP). The wCP increased by 95.6, 141.2, 391.6, 3.9, 261.3%, and nCP decreased by 69.5, 10.5, 33.8, 72.7, and 39.3% for homogenized soil samples compared to undisturbed soil samples. The soil water retention curves exhibited a significant decrease in water holding capacity for homogenized soil samples compared with the undisturbed soil samples. The homogenized soil samples showed also a decrease in soil hydraulic conductivity. The simulated results showed that water movement and distribution were affected by soil homogenizing. Moreover, soil homogenizing affected soil hydraulic properties and soil water transport. However, field studies are being needed to find the effect of these differences on water, chemical, and pollutant transport under several scenarios.

Epidemiological situation of toxocariasis in Iran: meta-analysis and systematic review.

PubMed

Abdi, Jahangir; Darabi, Maryam; Sayehmiri, Kouresh

2012-11-15

Toxocariasis is the clinical terms applied to infection of human with ascarid nematodes in the order Ascaridida, named toxocara canis and toxocara cati. It is transmitted from dog and cat to humans. Accidental ingestion of parasite eggs causes ocular and visceral larva migrans in human. The aim of this study is to study epidemiology of toxocariasis in Iran using meta-analysis and systematic review. Using main key words of toxocariasis including epidemiology, Toxocara spp. Iran, dog and cat in databases such as SID, Google scholar, Pubmed, Magiran and Iranmedex, a number of 50 articles was extracted. A number of 27 articles of them were eligible for meta-analysis. Data extracted from articles and archived in excel software for analysis. Variance of each study obtained using binomial distribution. Heterogeny of studies surveyed using Cochrans Q test. Data analyzed using Random Effect Model test. Overall prevalence of toxocariasis obtained 21.6% in Iran. In total of 27 articles, 6911 samples including 1543 carnivores, (13 articles), 4569 human sera (10 articles) and 799 soil samples (4 articles) has been investigated. Seropositivity for human toxocariasis 15.8% (95%CI, 9.2-22.5), soil contamination for Txocara spp. eggs 21.6% (95%CI,-1.6-44.8) and dogs and cats infections with adult worm 26.8% (95%CI, 18.7-36.8) was obtained. Results of this study show that prevalence of toxocariasis has a growing trend in Iran. It could be decreased using education, culture making and giving information to people.

Detection and Occurrence of N-Nitrosamines in Archived Biosolids from the Targeted National Sewage Sludge Survey of the U.S. Environmental Protection Agency

PubMed Central

2015-01-01

The occurrence of eight carcinogenic N-nitrosamines in biosolids from 74 wastewater treatment plants (WWTPs) in the contiguous United States was investigated. Using liquid chromatography-tandem mass spectrometry, seven nitrosamines [(N-nitrosodimethylamine (NDMA), N-nitrosomethylethylamine, N-nitrosodi-n-propylamine (NDPA), N-nitrosodibutylamine, N-nitrosopyrrolidine, N-nitrosopiperidine (NPIP), and N-nitrosodiphenylamine (NDPhA)] were detected with varying detection frequency (DF) in 88% of the biosolids samples (n = 80), with five of the seven being reported here for the first time in biosolids. While rarely detected (DF 3%), NDMA was the most abundant compound at an average concentration of 504 ± 417 ng/g dry weight of biosolids. The most frequently detected nitrosamine was NDPhA (0.7—147 ng/g) with a DF of 79%, followed by NDPA (7–505 ng/g) and NPIP (51–1185 ng/g) at 21% and 11%, respectively. The DF of nitrosamines in biosolids was positively correlated with their respective n-octanol–water partition coefficients (R2 = 0.65). The DF and sum of mean concentrations of nitrosamines in biosolids increased with the treatment capacity of WWTPs. Given their frequent occurrence in nationally representative samples and the amount of U.S. biosolids being applied on land as soil amendment, this study warrants more research into the occurrence and fate of nitrosamines in biosolids-amended soils in the context of crop and drinking water safety. PMID:24697330

Impact of the School Outreach Tour Program of Citizens Archive of Pakistan on Students' Perceptions and Attitudes

ERIC Educational Resources Information Center

Alam, Qutbi

2017-01-01

This paper examines the impact of School Outreach Tour (SOT-A) program,one of the projects of the Citizens Archive of Pakistan (CAP), a non-profit organisation on the perceptions and attitudes of Grade-8 Students of partners' schools. The sample in this study consists of (n = 139) students of Grade-8, selected by convenience sampling from five…

EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.

PubMed

Hunter, Sarah; Corbett, Matthew; Denise, Hubert; Fraser, Matthew; Gonzalez-Beltran, Alejandra; Hunter, Christopher; Jones, Philip; Leinonen, Rasko; McAnulla, Craig; Maguire, Eamonn; Maslen, John; Mitchell, Alex; Nuka, Gift; Oisel, Arnaud; Pesseat, Sebastien; Radhakrishnan, Rajesh; Rocca-Serra, Philippe; Scheremetjew, Maxim; Sterk, Peter; Vaughan, Daniel; Cochrane, Guy; Field, Dawn; Sansone, Susanna-Assunta

2014-01-01

Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body sites). Metagenomics brings with it a number of challenges, including the management, analysis, storage and sharing of data. In response to these challenges, we have developed a new metagenomics resource (http://www.ebi.ac.uk/metagenomics/) that allows users to easily submit raw nucleotide reads for functional and taxonomic analysis by a state-of-the-art pipeline, and have them automatically stored (together with descriptive, standards-compliant metadata) in the European Nucleotide Archive.

EBI metagenomics—a new resource for the analysis and archiving of metagenomic data

PubMed Central

Hunter, Sarah; Corbett, Matthew; Denise, Hubert; Fraser, Matthew; Gonzalez-Beltran, Alejandra; Hunter, Christopher; Jones, Philip; Leinonen, Rasko; McAnulla, Craig; Maguire, Eamonn; Maslen, John; Mitchell, Alex; Nuka, Gift; Oisel, Arnaud; Pesseat, Sebastien; Radhakrishnan, Rajesh; Rocca-Serra, Philippe; Scheremetjew, Maxim; Sterk, Peter; Vaughan, Daniel; Cochrane, Guy; Field, Dawn; Sansone, Susanna-Assunta

2014-01-01

Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body sites). Metagenomics brings with it a number of challenges, including the management, analysis, storage and sharing of data. In response to these challenges, we have developed a new metagenomics resource (http://www.ebi.ac.uk/metagenomics/) that allows users to easily submit raw nucleotide reads for functional and taxonomic analysis by a state-of-the-art pipeline, and have them automatically stored (together with descriptive, standards-compliant metadata) in the European Nucleotide Archive. PMID:24165880

Detection and Characterization of Circulating Tumour Cells from Frozen Peripheral Blood Mononuclear Cells

PubMed Central

Lu, David; Graf, Ryon P.; Harvey, Melissa; Madan, Ravi A.; Heery, Christopher; Marte, Jennifer; Beasley, Sharon; Tsang, Kwong Y.; Krupa, Rachel; Louw, Jessica; Wahl, Justin; Bales, Natalee; Landers, Mark; Marrinucci, Dena; Schlom, Jeffrey; Gulley, James L.; Dittamore, Ryan

2015-01-01

Retrospective analysis of patient tumour samples is a cornerstone of clinical research. CTC biomarker characterization offers a non-invasive method to analyse patient samples. However, current CTC technologies require prospective blood collection, thereby reducing the ability to utilize archived clinical cohorts with long-term outcome data. We sought to investigate CTC recovery from frozen, archived patient PBMC pellets. Matched samples from both mCRPC patients and mock samples, which were prepared by spiking healthy donor blood with cultured prostate cancer cell line cells, were processed “fresh” via Epic CTC Platform or from “frozen” PBMC pellets. Samples were analysed for CTC enumeration and biomarker characterization via immunofluorescent (IF) biomarkers, fluorescence in-situ hybridization (FISH) and CTC morphology. In the frozen patient PMBC samples, the median CTC recovery was 18%, compared to the freshly processed blood. However, abundance and localization of cytokeratin (CK) and androgen receptor (AR) protein, as measured by IF, were largely concordant between the fresh and frozen CTCs. Furthermore, a FISH analysis of PTEN loss showed high concordance in fresh vs. frozen. The observed data indicate that CTC biomarker characterization from frozen archival samples is feasible and representative of prospectively collected samples. PMID:28936240

The NASA Ames Life Sciences Data Archive: Biobanking for the Final Frontier

NASA Technical Reports Server (NTRS)

Rask, Jon; Chakravarty, Kaushik; French, Alison J.; Choi, Sungshin; Stewart, Helen J.

2017-01-01

The NASA Ames Institutional Scientific Collection involves the Ames Life Sciences Data Archive (ALSDA) and a biospecimen repository, which are responsible for archiving information and non-human biospecimens collected from spaceflight and matching ground control experiments. The ALSDA also manages a biospecimen sharing program, performs curation and long-term storage operations, and facilitates distribution of biospecimens for research purposes via a public website (https:lsda.jsc.nasa.gov). As part of our best practices, a tissue viability testing plan has been developed for the repository, which will assess the quality of samples subjected to long-term storage. We expect that the test results will confirm usability of the samples, enable broader science community interest, and verify operational efficiency of the archives. This work will also support NASA open science initiatives and guides development of NASA directives and policy for curation of biological collections.

The Global Streamflow Indices and Metadata archive (G-SIM): A compilation of global streamflow time series indices and meta-data

NASA Astrophysics Data System (ADS)

Do, Hong; Gudmundsson, Lukas; Leonard, Michael; Westra, Seth; Senerivatne, Sonia

2017-04-01

In-situ observations of daily streamflow with global coverage are a crucial asset for understanding large-scale freshwater resources which are an essential component of the Earth system and a prerequisite for societal development. Here we present the Global Streamflow Indices and Metadata archive (G-SIM), a collection indices derived from more than 20,000 daily streamflow time series across the globe. These indices are designed to support global assessments of change in wet and dry extremes, and have been compiled from 12 free-to-access online databases (seven national databases and five international collections). The G-SIM archive also includes significant metadata to help support detailed understanding of streamflow dynamics, with the inclusion of drainage area shapefile and many essential catchment properties such as land cover type, soil and topographic characteristics. The automated procedure in data handling and quality control of the project makes G-SIM a reproducible, extendible archive and can be utilised for many purposes in large-scale hydrology. Some potential applications include the identification of observational trends in hydrological extremes, the assessment of climate change impacts on streamflow regimes, and the validation of global hydrological models.

Archiving InSight Lander Science Data Using PDS4 Standards

NASA Astrophysics Data System (ADS)

Stein, T.; Guinness, E. A.; Slavney, S.

2017-12-01

The InSight Mars Lander is scheduled for launch in 2018, and science data from the mission will be archived in the NASA Planetary Data System (PDS) using the new PDS4 standards. InSight is a geophysical lander with a science payload that includes a seismometer, a probe to measure subsurface temperatures and heat flow, a suite of meteorology instruments, a magnetometer, an experiment using radio tracking, and a robotic arm that will provide soil physical property information based on interactions with the surface. InSight is not the first science mission to archive its data using PDS4. However, PDS4 archives do not currently contain examples of the kinds of data that several of the InSight instruments will produce. Whereas the existing common PDS4 standards were sufficient for most of archiving requirements of InSight, the data generated by a few instruments required development of several extensions to the PDS4 information model. For example, the seismometer will deliver a version of its data in SEED format, which is standard for the terrestrial seismology community. This format required the design of a new product type in the PDS4 information model. A local data dictionary has also been developed for InSight that contains attributes that are not part of the common PDS4 dictionary. The local dictionary provides metadata relevant to all InSight data sets, and attributes specific to several of the instruments. Additional classes and attributes were designed for the existing PDS4 geometry dictionary that will capture metadata for the lander position and orientation, along with camera models for stereo image processing. Much of the InSight archive planning and design work has been done by a Data Archiving Working Group (DAWG), which has members from the InSight project and the PDS. The group coordinates archive design, schedules and peer review of the archive documentation and test products. The InSight DAWG archiving effort for PDS is being led by the PDS Geosciences Node with several other nodes working one-on-one with instruments relevant to their disciplines. Once the InSight mission begins operations, the DAWG will continue to provide oversight on release of InSight data to PDS. Lessons learned from InSight archive work will also feed forward to planning the archives for the Mars 2020 rover.

Remedial investigation sampling and analysis plan for J-Field, Aberdeen Proving Ground, Maryland. Volume 1: Field Sampling Plan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Benioff, P.; Biang, R.; Dolak, D.

1995-03-01

The Environmental Management Division (EMD) of Aberdeen Proving Ground (APG), Maryland, is conducting a remedial investigation and feasibility study (RI/FS) of the J-Field area at APG pursuant to the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA), as amended. J-Field is within the Edgewood Area of APG in Harford County, Maryland (Figure 1. 1). Since World War II activities in the Edgewood Area have included the development, manufacture, testing, and destruction of chemical agents and munitions. These materials were destroyed at J-Field by open burning and open detonation (OB/OD). Considerable archival information about J-Field exists as a result of effortsmore » by APG staff to characterize the hazards associated with the site. Contamination of J-Field was first detected during an environmental survey of the Edgewood Area conducted in 1977 and 1978 by the US Army Toxic and Hazardous Materials Agency (USATHAMA) (predecessor to the US Army Environmental Center [AEC]). As part of a subsequent USATHAMA -environmental survey, 11 wells were installed and sampled at J-Field. Contamination at J-Field was also detected during a munitions disposal survey conducted by Princeton Aqua Science in 1983. The Princeton Aqua Science investigation involved the installation and sampling of nine wells and the collection and analysis of surficial and deep composite soil samples. In 1986, a Resource Conservation and Recovery Act (RCRA) permit (MD3-21-002-1355) requiring a basewide RCRA Facility Assessment (RFA) and a hydrogeologic assessment of J-Field was issued by the US Environmental Protection Agency (EPA). In 1987, the US Geological Survey (USGS) began a two-phased hydrogeologic assessment in data were collected to model, groundwater flow at J-Field. Soil gas investigations were conducted, several well clusters were installed, a groundwater flow model was developed, and groundwater and surface water monitoring programs were established that continue today.« less

VizieR Online Data Catalog: Ccompact group galaxies UV and IR SFR (Lenkic+, 2016)

NASA Astrophysics Data System (ADS)

Lenkic, L.; Tzanavaris, P.; Gallagher, S. C.; Desjardins, T. D.; Walker, L. M.; Johnson, K. E.; Fedotov, K.; Charlton, J.; Hornschemeier, A. E.; Durrell, P. R.; Gronwall, C.

2017-07-01

The sample of CGs studied here is the same sample studied by Walker et al. (2012AJ....143...69W) of 49 CGs: 33 Hickson Compact Groups and 16 Redshift Survey Compact Groups (RSCGs). The RSCG catalogue of 89 CGs was constructed by Barton et al. (1996AJ....112..871B). The data used in this study originated from 'fill-in' observations with UVOT's three UV filters (uvw2, uvm2, uvw1) as well as the bluest optical filter (u). All UV data (PI: Tzanavaris) were downloaded from the Swift archive. The Spitzer Infrared Array Camera images for our sample of CGs are archival data presented by Walker et al. (2012AJ....143...69W) Spitzer MIPS (24um) data were obtained from the Spitzer Heritage Archive. (4 data files).

[Quality of DNA from archival pathological samples of gallbladder cancer].

PubMed

Roa, Iván; de Toro, Gonzalo; Sánchez, Tamara; Slater, Jeannie; Ziegler, Anne Marie; Game, Anakaren; Arellano, Leonardo; Schalper, Kurt; de Aretxabala, Xabier

2013-12-01

The quality of the archival samples stored at pathology services could be a limiting factor for molecular biology studies. To determine the quality of DNA extracted from gallbladder cancer samples at different institutions. One hundred ninety four samples coming from five medical centers in Chile, were analyzed. DNA extraction was quantified determining genomic DNA concentration. The integrity of DNA was determined by polymerase chain reaction amplification of different length fragments of a constitutive gene (β-globin products of 110, 268 and 501 base pairs). The mean DNA concentration obtained in 194 gallbladder cancer samples was 48 ± 43.1 ng/µl. In 22% of samples, no amplification was achieved despite obtaining a mean DNA concentration of 58.3 ng/ul. In 81, 67 and 22% of samples, a DNA amplification of at least 110, 268 or 501 base pairs was obtained, respectively. No differences in DNA concentration according to the source of the samples were demonstrated. However, there were marked differences in DNA integrity among participating centers. Samples from public hospitals were of lower quality than those from private clinics. Despite some limitations, in 80% of cases, the integrity of DNA in archival samples from pathology services in our country would allow the use of molecular biology techniques.

Exfiltrometer apparatus and method for measuring unsaturated hydrologic properties in soil

DOEpatents

Hubbell, Joel M.; Sisson, James B.; Schafer, Annette L.

2006-01-17

Exfiltrometer apparatus includes a container for holding soil. A sample container for holding sample soil is positionable with respect to the container so that the sample soil contained in the sample container is in communication with soil contained in the container. A first tensiometer operatively associated with the sample container senses a surface water potential at about a surface of the sample soil contained in the sample container. A second tensiometer operatively associated with the sample container senses a first subsurface water potential below the surface of the sample soil. A water content sensor operatively associated with the sample container senses a water content in the sample soil. A water supply supplies water to the sample soil. A data logger operatively connected to the first and second tensiometers, and to the water content sensor receives and processes data provided by the first and second tensiometers and by the water content sensor.

A regional soil and sediment geochemical study in northern California

USGS Publications Warehouse

Goldhaber, M.B.; Morrison, J.M.; Holloway, J.M.; Wanty, R.B.; Helsel, D.R.; Smith, D.B.

2009-01-01

Regional-scale variations in soil geochemistry were investigated in a 20,000-km2 study area in northern California that includes the western slope of the Sierra Nevada, the southern Sacramento Valley and the northern Coast Ranges. Over 1300 archival soil samples collected from the late 1970s to 1980 in El Dorado, Placer, Sutter, Sacramento, Yolo and Solano counties were analyzed for 42 elements by inductively coupled plasma-atomic emission spectrometry and inductively coupled plasma-mass spectrometry following a near-total dissolution. These data were supplemented by analysis of more than 500 stream-sediment samples from higher elevations in the Sierra Nevada from the same study site. The relatively high-density data (1 sample per 15 km2 for much of the study area) allows the delineation of regional geochemical patterns and the identification of processes that produced these patterns. The geochemical results segregate broadly into distinct element groupings whose distribution reflects the interplay of geologic, hydrologic, geomorphic and anthropogenic factors. One such group includes elements associated with mafic and ultramafic rocks including Cr, Ni, V, Co, Cu and Mg. Using Cr as an example, elevated concentrations occur in soils overlying ultramafic rocks in the foothills of the Sierra Nevada (median Cr = 160 mg/kg) as well as in the northern Coast Ranges. Low concentrations of these elements occur in soils located further upslope in the Sierra Nevada overlying Tertiary volcanic, metasedimentary and plutonic rocks (granodiorite and diorite). Eastern Sacramento Valley soil samples, defined as those located east of the Sacramento River, are lower in Cr (median Cr = 84 mg/kg), and are systematically lower in this suite compared to soils from the west side of the Sacramento Valley (median Cr = 130 mg/kg). A second group of elements showing a coherent pattern, including Ca, K, Sr and REE, is derived from relatively silicic rocks types. This group occurs at elevated concentrations in soils overlying volcanic and plutonic rocks at higher elevations in the Sierras (e.g. median La = 28 mg/kg) and the east side of the Sacramento Valley (median 20 mg/kg) compared to soils overlying ultramafic rocks in the Sierra Nevada foothills (median 15 mg/kg) and the western Sacramento Valley (median 14 mg/kg). The segregation of soil geochemistry into distinctive groupings across the Sacramento River arises from the former presence of a natural levee (now replaced by an artificial one) along the banks of the river. This levee has been a barrier to sediment transport. Sediment transport to the Valley by glacial outwash from higher elevations in the Sierra Nevada and, more recently, debris from placer Au mining has dominated sediment transport to the eastern Valley. High content of mafic elements (and low content of silicic elements) in surface soil in the west side of the valley is due to a combination of lack of silicic source rocks, transport of ultramafic rock material from the Coast Ranges, and input of sediment from the late Mesozoic Great Valley Group, which is itself enriched in mafic elements. A third group of elements (Zn, Cd, As and Cu) reflect the impact of mining activity. Soil with elevated content of these elements occurs along the Sacramento River in both levee and adjacent flood basin settings. It is interpreted that transport of sediment down the Sacramento River from massive sulfide mines in the Klamath Mountains to the north has caused this pattern. The Pb, and to some extent Zn, distribution patterns are strongly impacted by anthropogenic inputs. Elevated Pb content is localized in major cites and along major highways due to inputs from leaded gasoline. Zinc has a similar distribution pattern but the source is tire wear.

DownscaleConcept 2.3 User Manual. Downscaled, Spatially Distributed Soil Moisture Calculator

DTIC Science & Technology

2011-01-01

be first presented with the dataset 28 results to your query. From this page, check the box next to the ASTER GDEM dataset and press the "List...information for verification. No charge will be associated with GDEM data archives. 14. Select "Submit Order Now!" to process your order. 15. Wait for

HVSR Response Evolution due to Seasonal Variation: Observations from 2 Years of Continuous Monitoring

NASA Astrophysics Data System (ADS)

Nurse, K. B.; Milkereit, B.

2017-12-01

The seismic Horizontal to Vertical Spectral Ratio analysis technique reliably gives overburden depth to bedrock, for an independently determined Vs, based on the frequency of the main resonance peak. Above this, smaller resonances reflect the velocity structure within the overburden itself. This range in the HVSR response shows sufficient sensitivity to be exploited as a monitoring tool, to detect change in seismic physical properties and from that, change in overburden conditions. To explore the variation of the response, several 3C geophones have been deployed in southern Ontario, Canada since December 2015 (and ongoing). The local geology is a sedimentary basin with 30m of overburden, a simple 2D environment well suited for the HVSR method. Data are collected for 15s per minute, with an effective frequency band of 2-400Hz. HVSR estimates are produced for each sampling period and archived. Over these two years, winter freeze/thaw, saturated spring and summer draught conditions were sampled. H/V daily averages are dominated by the stable 3Hz resonance due to the overall surface layer, but smaller spectral peaks up to 100Hz are clear and evolve in frequency and amplitude over the collection period. Ground freeze/thaw cycles are clearly evident by significant reduction in the horizontal field, but also the changing of the soil moisture content throughout the year causes subtle shifts in the response (correlated to rain events and water table variation). The long term sampling does show a sensitivity of the HVSR method to the overburden in proximity to the sensor, and suggests a possibility for its use in monitoring soil / water-table conditions. But it also highlights that the estimate from an isolated H/V acquisition does include this variability and needs to be adequately quantified in VS30 estimates.

Long-term experiments to better understand soil-human interactions

NASA Astrophysics Data System (ADS)

Bormann, B. T.; Homann, P. S.

2011-12-01

Interactions between soils and people may be transforming global conditions, but the interactions are poorly understood. Changes in soils have proven difficult to quantify, especially in complex ecosystems manifesting large spatiotemporal variability. Long-term ecosystem experiments that evaluate soil change and demonstrate alternative choices are important to understanding changes, discovering new controls and drivers, and influencing decisions. Inspired by agriculture studies, like Rothamsted, the US Forest Service established in 1990 a network of operational-scale experiments across the Pacific Northwest to evaluate long-term effects of different forest management and disturbance regimes. With a strong experimental design, these experiments are now helping to better understand the long-term effects of managing tree harvesting (clearcutting and thinning), woody debris, and tree and understory species composition, and-serendipitously-the effects of fire. Initial results from the Southern Oregon experimental site indicate surprisingly rapid soil changes in some regimes but not others. We've also learned that rapid change presents challenges to repeat sampling. We present our sample-archive and comparable-layer approaches that seek to accommodate changes in surface elevation, aggregation and disaggregation, and mineral-soil exports. Thinning mature forest stands (80-100 yrs old) did not significantly change soil C in 11-yrs. A small upper-layer C increase was observed after thinning, but it was similar to the control. Significant increases in upper-layer soil N were observed with most treatments, but all increases were similar to the control. Leaving woody debris had little effect. The most remarkable change occurred when mature stands were clearcut and Douglas-firs were planted and tended. Associated with rapid growth of Douglas-fir, an average of 8 Mg C ha-1 was lost from weathered soil 4-18 cm deep. This contrasts with clearcuts where early-seral hardwoods and knobcone pines were established, that trended positively with 2 Mg C ha-1. Soil changes resulting from wild and prescribed fire were substantial. About 50% of the soil C (3-21 Mg ha-1) and 36% of soil N (41-650 kg ha-1) were lost from the upper profile (0-6.2 cm) compared to pre-fire conditions. Intense wildfire that killed most forest trees had about double the losses of C and N than forests burned at lower temperature with fewer trees killed. Average wildfire C losses were more than twice prescribed-fire losses. A long-term perspective is needed to compare episodic influences on soils, like harvesting and wildfire, to day-in, day-out effects of different species mixtures. Especially important is the effect of shrubs, that can rapidly achieve full leaf area but that lack the woody stem structure to store captured C as well as conifers. In theory, therefore, extending shrub cover will increase soil C. The annual profile soil C loss in Douglas-fir (-0.8 Mg ha-1yr-1), if continued beyond 11 yrs, would be similar to the effects of a fire-return interval of less than a third of the historical interval of about 100 years. National and regional soil-C monitoring would benefit from being grounded in existing experimental studies to help integrate large-scale changes with an unfolding understanding of processes in ways useful to decisionmakers.

Optimal extraction of quasar Lyman limit absorption systems from the IUE archive

NASA Technical Reports Server (NTRS)

Tytler, David

1992-01-01

The IUE archive contains a wealth of information on Lyman limit absorption systems (LLS) in quasar spectra. QSO spectra from the IUE data base were optimally extracted, coadded, and analyzed to yield a homogeneous samples of LLS at low red shifts. This sample comprise 36 LLS, twice the number previously analyzed low z samples. These systems are ideal for the determination of the origin, redshift evolution, ionization, velocity dispersions and the metal abundances of absorption systems. Two of them are also excellent targets for the primordial Deuterium to Hydrogen ratio.

Measurements of CO2 Mole Fractionand δ13C in Archived Air Samples from Cape Meares, Oregon (USA) 1977 - 1998

NASA Astrophysics Data System (ADS)

Clark, O.; Rice, A. L.

2017-12-01

Carbon dioxide (CO2) is the most abundant, anthropogenically forced greenhouse gas (GHG) in the global atmosphere. Emissions of CO2 account for approximately 75% of the world's total GHG emissions. Atmospheric concentrations of CO2 are higher now than they've been at any other time in the past 800,000 years. Currently, the global mean concentration exceeds 400 ppm. Today, global networks regularly monitor CO2 concentrations and isotopic composition (δ13C and δ18O). However, past data is sparse. Over 200 ambient air samples from Cape Meares, Oregon (45.5°N, 124.0°W), a coastal site in Western United States, were obtained by researchers at Oregon Institute of Science and Technology (OGI, now Oregon Health & Science University), between the years of 1977 and 1998 as part of a global monitoring program of six different sites in the polar, middle, and tropical latitudes of the Northern and Southern Hemispheres. Air liquefaction was used to compress approximately 1000L of air (STP) to 30bar, into 33L electropolished (SUMMA) stainless steel canisters. Select archived air samples from the original network are maintained at Portland State University (PSU) Department of Physics. These archived samples are a valuable look at changing atmospheric concentrations of CO2 and δ13C, which can contribute to a better understanding of changes in sources during this time. CO2 concentrations and δ13C of CO2 were measured at PSU, with a Picarro Cavity Ringdown Spectrometer, model G1101-i analytical system. This study presents the analytical methods used, calibration techniques, precision, and reproducibility. Measurements of select samples from the archive show rising CO2 concentrations and falling δ13C over the 1977 to 1998 period, compatible with previous observations and rising anthropogenic sources of CO2. The resulting data set was statistically analyzed in MATLAB. Results of preliminary seasonal and secular trends from the archive samples are presented.

Predicting bi-decadal organic carbon mineralization in northwestern European soils with Rock-Eval pyrolysis

NASA Astrophysics Data System (ADS)

Soucemarianadin, Laure; Barré, Pierre; Baudin, François; Chenu, Claire; Houot, Sabine; Kätterer, Thomas; Macdonald, Andy; van Oort, Folkert; Plante, Alain F.; Cécillon, Lauric

2017-04-01

The organic carbon reservoir of soils is a key component of climate change, calling for an accurate knowledge of the residence time of soil organic carbon (SOC). Existing proxies of the size of SOC labile pool such as SOC fractionation or respiration tests are time consuming and unable to consistently predict SOC mineralization over years to decades. Similarly, models of SOC dynamics often yield unrealistic values of the size of SOC kinetic pools. Thermal analysis of bulk soil samples has recently been shown to provide useful and cost-effective information regarding the long-term in-situ decomposition of SOC. Barré et al. (2016) analyzed soil samples from long-term bare fallow sites in northwestern Europe using Rock-Eval 6 pyrolysis (RE6), and demonstrated that persistent SOC is thermally more stable and has less hydrogen-rich compounds (low RE6 HI parameter) than labile SOC. The objective of this study was to predict SOC loss over a 20-year period (i.e. the size of the SOC pool with a residence time lower than 20 years) using RE6 indicators. Thirty-six archive soil samples coming from 4 long-term bare fallow chronosequences (Grignon, France; Rothamsted, Great Britain; Ultuna, Sweden; Versailles, France) were used in this study. For each sample, the value of bi-decadal SOC mineralization was obtained from the observed SOC dynamics of its long-term bare fallow plot (approximated by a spline function). Those values ranged from 0.8 to 14.3 gC·kg-1 (concentration data), representing 8.6 to 50.6% of total SOC (proportion data). All samples were analyzed using RE6 and simple linear regression models were used to predict bi-decadal SOC loss (concentration and proportion data) from 4 RE6 parameters: HI, OI, PC/SOC and T50 CO2 oxidation. HI (the amount of hydrogen-rich effluents formed during the pyrolysis phase of RE6; mgCH.g-1SOC) and OI (the CO2 yield during the pyrolysis phase of RE6; mgCO2.g-1SOC) parameters describe SOC bulk chemistry. PC/SOC (the amount of organic C evolved during the pyrolysis phase of RE6; % of total SOC) and T50 CO2 oxidation (the temperature at which 50% of the residual organic C was oxidized to CO2 during the RE6 oxidation phase; °C) parameters represent SOC thermal stability. The RE6 HI parameter yielded the best predictions of bi-decadal SOC mineralization, for both concentration (R2 = 0.75) and proportion (R2 = 0.66) data. PC/SOC and T50 CO2 oxidation parameters also yielded significant regression models with R2 = 0.68 and 0.42 for concentration data and R2 = 0.59 and 0.26 for proportion data, respectively. The OI parameter was not a good predictor of bi-decadal SOC loss, with non-significant regression models. The RE6 thermal analysis method can predict in-situ SOC biogeochemical stability. SOC chemical composition, and to a lesser SOC thermal stability, are related to its bi-decadal dynamics. RE6 appears to be a more accurate and convenient proxy of the size of the bi-decadal labile SOC pool than other existing methodologies. Future developments include the validation of these RE6 models of bi-decadal SOC loss on soils from contrasted pedoclimatic conditions. Reference: Barré et al., 2016. Biogeochemistry 130, 1-12

The Cancer Digital Slide Archive - TCGA

Cancer.gov

Dr. David Gutman and Dr. Lee Cooper developed The Cancer Digital Slide Archive (CDSA), a web platform for accessing pathology slide images of TCGA samples. Find out how they did it and how to use the CDSA website in this Case Study.

Radiocarbon age-offsets in an arctic lake reveal the long-term response of permafrost carbon to climate change

USGS Publications Warehouse

Gaglioti, Benjamin V.; Mann, Daniel H.; Jones, Benjamin M.; Pohlman, John W.; Kunz, Michael L.; Wooller, Matthew J.

2014-01-01

Continued warming of the Arctic may cause permafrost to thaw and speed the decomposition of large stores of soil organic carbon (OC), thereby accentuating global warming. However, it is unclear if recent warming has raised the current rates of permafrost OC release to anomalous levels or to what extent soil carbon release is sensitive to climate forcing. Here we use a time series of radiocarbon age-offsets (14C) between the bulk lake sediment and plant macrofossils deposited in an arctic lake as an archive for soil and permafrost OC release over the last 14,500 years. The lake traps and archives OC imported from the watershed and allows us to test whether prior warming events stimulated old carbon release and heightened age-offsets. Today, the age-offset (2 ka; thousand of calibrated years before A.D. 1950) and the depositional rate of ancient OC from the watershed into the lake are relatively low and similar to those during the Younger Dryas cold interval (occurring 12.9–11.7 ka). In contrast, age-offsets were higher (3.0–5.0 ka) when summer air temperatures were warmer than present during the Holocene Thermal Maximum (11.7–9.0 ka) and Bølling-Allerød periods (14.5–12.9 ka). During these warm times, permafrost thaw contributed to ancient OC depositional rates that were ~10 times greater than today. Although permafrost OC was vulnerable to climate warming in the past, we suggest surface soil organic horizons and peat are presently limiting summer thaw and carbon release. As a result, the temperature threshold to trigger widespread permafrost OC release is higher than during previous warming events.

Three Proposed Compendia for Genesis Solar Wind Samples: Science Results, Collector Materials Characterization and Cleaning Techniques

NASA Technical Reports Server (NTRS)

Allton, J. H.; Calaway, M. J.; Nyquist, L. E.; Jurewicz, A. J. G.; Burnett, D. S.

2018-01-01

Final Paper and not the abstract is attached. Introduction: Planetary material and cosmochemistry research using Genesis solar wind samples (including the development and implementation of cleaning and analytical techniques) has matured sufficiently that compilations on several topics, if made publically accessible, would be beneficial for researchers and reviewers. We propose here three compendia based on content, organization and source of documents (e.g. published peer-reviewed, published, internal memos, archives). For planning purposes, suggestions are solicited from potential users of Genesis solar wind samples for the type of science content and/or organizational style that would be most useful to them. These compendia are proposed as living documents, periodically updated. Similar to the existing compendia described below, the curation compendia are like library or archival finding aids, they are guides to published or archival documents and should not be cited as primary sources.

Identification of mycotoxins by UHPLC–QTOF MS in airborne fungi and fungi isolated from industrial paper and antique documents from the Archive of Bogotá

DOE Office of Scientific and Technical Information (OSTI.GOV)

Castillo, Nancy I.; Ibáñez, María; Beltrán, Eduardo

Mold deterioration of historical documents in archives and libraries is a frequent and complex phenomenon that may have important economic and cultural consequences. In addition, exposure to toxic fungal metabolites might produce health problems. In this work, samples of broths of fungal species isolated from the documentary material and from indoor environmental samples of the Archive of Bogotá have been analyzed to investigate the presence of mycotoxins. High resolution mass spectrometry made possible to search for a large number of mycotoxins, even without reference standards available at the laboratory. For this purpose, a screening strategy based on ultra-high pressure liquidmore » chromatography coupled to quadrupole-time of flight mass spectrometry (UHPLC–QTOF MS) under MS{sup E} mode was applied. A customized home-made database containing elemental composition for around 600 mycotoxins was compiled. The presence of the (de)protonated molecule measured at its accurate mass was evaluated in the samples. When a peak was detected, collision induced dissociation fragments and characteristic isotopic ions were also evaluated and used for tentative identification, based on structure compatibility and comparison with literature data (if existing). Up to 44 mycotoxins were tentatively identified by UHPLC–QTOF MS. 34 of these tentative compounds were confirmed by subsequent analysis using a targeted LC–MS/MS method, supporting the strong potential of QTOF MS for identification/elucidation purposes. The presence of mycotoxins in these samples might help to reinforce safety measures for researchers and staff who work on reception, restoration and conservation of archival material, not only at the Archive of Bogotá but worldwide. - Highlights: • Mold deterioration of historical documents is a frequent and complex phenomenon. • Samples of broths of fungal species isolated from Archive of Bogotá analyzed. • UHPLC–QTOF MS (MS{sup E}) applied for mycotoxins screening, without reference standards. • Customized home-made database for around 600 mycotoxins compiled. • 44 mycotoxins tentatively identified, 34 of which confirmed by LC–MS/MS.« less

1km Soil Moisture from Downsampled Sentinel-1 SAR Data: Harnessing Assets and Overcoming Obstacles.

NASA Astrophysics Data System (ADS)

Bauer-Marschallinger, Bernhard; Cao, Senmao; Schaufler, Stefan; Paulik, Christoph; Naeimi, Vahid; Wagner, Wolfgang

2017-04-01

Radars onboard Earth observing satellites allow estimating Surface Soil Moisture (SSM) regularly and globally. The use of coarse-scale measurements from active or passive radars for SSM retrieval is well established and in operational use. Thanks to the Sentinel-1 mission, launched in 2014 and deploying Synthetic Aperture Radars (SAR), high-resolution radar imagery is routinely available at the scale of 20 meters, with a high revisit frequency of 3-6 days and with unprecedented radiometric accuracy. However, the direct exploitation of high-resolution SAR data for SSM retrieval is complicated by several problems: Small-scaled contributions to the radar backscatter from individual ground features often obscure the soil moisture signal, rendering common algorithms insensitive to SSM. Furthermore, the influence of vegetation dynamics on the radar signal is less understood than in the coarse-scale case, leading to biases during the vegetation period. Finally, the large data volumes of high-resolution remote sensing data present a great load on hardware systems. Consequently, a spatial resampling of the high-resolution SAR data to a 500 meters sampling is done, allowing the exploitation of information at 10 meter sampling, but reducing effectively the inherent uncertainties. The thereof retrieved 1km SSM product aims to describe the soil moisture dynamics at medium scale with high quality. We adopted the TU-Wien Change Detection algorithm to the Sentinel-1 data, which was already successfully used for retrieving SSM from ERS-1/2 and Envisat-ASAR observations. The adoption entails a new method for SAR image resampling, including a masking for pixels that do not carry soil moisture signals, preventing them to spread during downsampling. Furthermore, the observation angle between the radar sensors and the ground is treated in a different way, as Sentinel-1 sensors observe from fixed orbit paths (in contrast to other radar sensors). Here, a regression model is developed that successfully estimates the dependency of radar backscatter to observation angle with statistical parameters from the Sentinel-1 SAR time series archive. We present the Sentinel-1 1km-SSM product generated by the adopted change detection algorithm. The dataset covers the European continent and holds data from October 2014 ongoing. In addition to a validation of the SSM product, the statistical SAR parameters used during SSM retrieval are examined.

Estimating historical atmospheric mercury concentrations from silver mining and their legacies in present-day surface soil in Potosí, Bolivia

NASA Astrophysics Data System (ADS)

Hagan, Nicole; Robins, Nicholas; Hsu-Kim, Heileen; Halabi, Susan; Morris, Mark; Woodall, George; Zhang, Tong; Bacon, Allan; Richter, Daniel De B.; Vandenberg, John

2011-12-01

Detailed Spanish records of mercury use and silver production during the colonial period in Potosí, Bolivia were evaluated to estimate atmospheric emissions of mercury from silver smelting. Mercury was used in the silver production process in Potosí and nearly 32,000 metric tons of mercury were released to the environment. AERMOD was used in combination with the estimated emissions to approximate historical air concentrations of mercury from colonial mining operations during 1715, a year of relatively low silver production. Source characteristics were selected from archival documents, colonial maps and images of silver smelters in Potosí and a base case of input parameters was selected. Input parameters were varied to understand the sensitivity of the model to each parameter. Modeled maximum 1-h concentrations were most sensitive to stack height and diameter, whereas an index of community exposure was relatively insensitive to uncertainty in input parameters. Modeled 1-h and long-term concentrations were compared to inhalation reference values for elemental mercury vapor. Estimated 1-h maximum concentrations within 500 m of the silver smelters consistently exceeded present-day occupational inhalation reference values. Additionally, the entire community was estimated to have been exposed to levels of mercury vapor that exceed present-day acute inhalation reference values for the general public. Estimated long-term maximum concentrations of mercury were predicted to substantially exceed the EPA Reference Concentration for areas within 600 m of the silver smelters. A concentration gradient predicted by AERMOD was used to select soil sampling locations along transects in Potosí. Total mercury in soils ranged from 0.105 to 155 mg kg-1, among the highest levels reported for surface soils in the scientific literature. The correlation between estimated air concentrations and measured soil concentrations will guide future research to determine the extent to which the current community of Potosí and vicinity is at risk of adverse health effects from historical mercury contamination.

Post-mortem testing; germline BRCA1/2 variant detection using archival FFPE non-tumor tissue. A new paradigm in genetic counseling.

PubMed

Petersen, Annabeth Høgh; Aagaard, Mads Malik; Nielsen, Henriette Roed; Steffensen, Karina Dahl; Waldstrøm, Marianne; Bojesen, Anders

2016-08-01

Accurate estimation of cancer risk in HBOC families often requires BRCA1/2 testing, but this may be impossible in deceased family members. Previous, testing archival formalin-fixed, paraffin-embedded (FFPE) tissue for germline BRCA1/2 variants was unsuccessful, except for the Jewish founder mutations. A high-throughput method to systematically test for variants in all coding regions of BRCA1/2 in archival FFPE samples of non-tumor tissue is described, using HaloPlex target enrichment and next-generation sequencing. In a validation study, correct identification of variants or wild-type was possible in 25 out of 30 (83%) FFPE samples (age range 1-14 years), with a known variant status in BRCA1/2. No false positive was found. Unsuccessful identification was due to highly degraded DNA or presence of large intragenic deletions. In clinical use, a total of 201 FFPE samples (aged 0-43 years) were processed. Thirty-six samples were rejected because of highly degraded DNA or failed library preparation. Fifteen samples were investigated to search for a known variant. In the remaining 150 samples (aged 0-38 years), three variants known to affect function and one variant likely to affect function in BRCA1, six variants known to affect function and one variant likely to affect function in BRCA2, as well as four variants of unknown significance (VUS) in BRCA1 and three VUS in BRCA2 were discovered. It is now possible to test for germline BRCA1/2 variants in deceased persons, using archival FFPE samples from non-tumor tissue. Accurate genetic counseling is achievable in families where variant testing would otherwise be impossible.

Post-mortem testing; germline BRCA1/2 variant detection using archival FFPE non-tumor tissue. A new paradigm in genetic counseling

PubMed Central

Petersen, Annabeth Høgh; Aagaard, Mads Malik; Nielsen, Henriette Roed; Steffensen, Karina Dahl; Waldstrøm, Marianne; Bojesen, Anders

2016-01-01

Accurate estimation of cancer risk in HBOC families often requires BRCA1/2 testing, but this may be impossible in deceased family members. Previous, testing archival formalin-fixed, paraffin-embedded (FFPE) tissue for germline BRCA1/2 variants was unsuccessful, except for the Jewish founder mutations. A high-throughput method to systematically test for variants in all coding regions of BRCA1/2 in archival FFPE samples of non-tumor tissue is described, using HaloPlex target enrichment and next-generation sequencing. In a validation study, correct identification of variants or wild-type was possible in 25 out of 30 (83%) FFPE samples (age range 1–14 years), with a known variant status in BRCA1/2. No false positive was found. Unsuccessful identification was due to highly degraded DNA or presence of large intragenic deletions. In clinical use, a total of 201 FFPE samples (aged 0–43 years) were processed. Thirty-six samples were rejected because of highly degraded DNA or failed library preparation. Fifteen samples were investigated to search for a known variant. In the remaining 150 samples (aged 0–38 years), three variants known to affect function and one variant likely to affect function in BRCA1, six variants known to affect function and one variant likely to affect function in BRCA2, as well as four variants of unknown significance (VUS) in BRCA1 and three VUS in BRCA2 were discovered. It is now possible to test for germline BRCA1/2 variants in deceased persons, using archival FFPE samples from non-tumor tissue. Accurate genetic counseling is achievable in families where variant testing would otherwise be impossible. PMID:26733283

The Hubble Spectroscopic Legacy Archive

NASA Astrophysics Data System (ADS)

Peeples, M.; Tumlinson, J.; Fox, A.; Aloisi, A.; Fleming, S.; Jedrzejewski, R.; Oliveira, C.; Ayres, T.; Danforth, C.; Keeney, B.; Jenkins, E.

2017-04-01

With no future space ultraviolet instruments currently planned, the data from the UV spectrographs aboard the Hubble Space Telescope have a legacy value beyond their initial science goals. The goal of the Hubble Spectroscopic Legacy Archive(HSLA) is to provide to the community new science-grade combined spectra for all publicly available data obtained by the Cosmic Origins Spectrograph (COS)and the Space Telescope Imaging Spectrograph (STIS). These data are packaged into "smart archives" according to target type and scientific themes to facilitate the construction of archival samples for common science uses. A new "quick look" capability makes the data easy for users to quickly access, assess the quality of,and download for archival science. The first generation of these products for the far-ultraviolet (FUV) modes of COS was made available online via the Mikulski Archive for Space Telescopes (MAST) in early 2016 and updated in early 2017; future releases will include COS/NUV and STIS/UV data.

Modeling Anaerobic Soil Organic Carbon Decomposition in Arctic Polygon Tundra: Insights into Soil Geochemical Influences on Carbon Mineralization: Modeling Archive

DOE Data Explorer

Zheng, Jianqiu; Thornton, Peter; Painter, Scott; Gu, Baohua; Wullschleger, Stan; Graham, David

2018-06-13

This anaerobic carbon decomposition model is developed with explicit representation of fermentation, methanogenesis and iron reduction by combining three well-known modeling approaches developed in different disciplines. A pool-based model to represent upstream carbon transformations and replenishment of DOC pool, a thermodynamically-based model to calculate rate kinetics and biomass growth for methanogenesis and Fe(III) reduction, and a humic ion-binding model for aqueous phase speciation and pH calculation are implemented into the open source geochemical model PHREEQC (V3.0). Installation of PHREEQC is required to run this model.

BOREAS TE-6 Allometry Data

NASA Technical Reports Server (NTRS)

Hall, Forrest G. (Editor); Papagno, Andrea (Editor); Gower, Stith T.; Vogel, Jason G.

2000-01-01

The BOREAS TE-6 team collected several data sets in support of its efforts to characterize and interpret information on the plant biomass, allometry, biometry, sapwood, leaf area index, net primary production, soil temperature, leaf water potential, soil CO2 flux, and multivegetation imagery of boreal vegetation. This data set includes tree measurements conducted on the above-ground biomass of trees in the BOREAS NSA and SSA during the growing seasons of 1994 and 1995 and the derived allometric relationships/equations. The data are stored in ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distrobuted Activity Archive Center (DAAC).

Identification of mycotoxins by UHPLC-QTOF MS in airborne fungi and fungi isolated from industrial paper and antique documents from the Archive of Bogotá.

PubMed

Castillo, Nancy I; Ibáñez, María; Beltrán, Eduardo; Rivera-Monroy, Jhon; Ochoa, Juan Camilo; Páez-Castillo, Mónica; Posada-Buitrago, Martha L; Sulyok, Michael; Hernández, Félix

2016-01-01

Mold deterioration of historical documents in archives and libraries is a frequent and complex phenomenon that may have important economic and cultural consequences. In addition, exposure to toxic fungal metabolites might produce health problems. In this work, samples of broths of fungal species isolated from the documentary material and from indoor environmental samples of the Archive of Bogotá have been analyzed to investigate the presence of mycotoxins. High resolution mass spectrometry made possible to search for a large number of mycotoxins, even without reference standards available at the laboratory. For this purpose, a screening strategy based on ultra-high pressure liquid chromatography coupled to quadrupole-time of flight mass spectrometry (UHPLC-QTOF MS) under MS(E) mode was applied. A customized home-made database containing elemental composition for around 600 mycotoxins was compiled. The presence of the (de)protonated molecule measured at its accurate mass was evaluated in the samples. When a peak was detected, collision induced dissociation fragments and characteristic isotopic ions were also evaluated and used for tentative identification, based on structure compatibility and comparison with literature data (if existing). Up to 44 mycotoxins were tentatively identified by UHPLC-QTOF MS. 34 of these tentative compounds were confirmed by subsequent analysis using a targeted LC-MS/MS method, supporting the strong potential of QTOF MS for identification/elucidation purposes. The presence of mycotoxins in these samples might help to reinforce safety measures for researchers and staff who work on reception, restoration and conservation of archival material, not only at the Archive of Bogotá but worldwide. Copyright © 2015 Elsevier Inc. All rights reserved.

The Hubble Spectroscopic Legacy Archive

NASA Astrophysics Data System (ADS)

Peeples, Molly S.; Tumlinson, Jason; Fox, Andrew; Aloisi, Alessandra; Ayres, Thomas R.; Danforth, Charles; Fleming, Scott W.; Jenkins, Edward B.; Jedrzejewski, Robert I.; Keeney, Brian A.; Oliveira, Cristina M.

2016-01-01

With no future space ultraviolet instruments currently planned, the data from the UV spectrographs aboard the Hubble Space Telescope have a legacy value beyond their initial science goals. The Hubble Spectroscopic Legacy Archive will provide to the community new science-grade combined spectra for all publicly available data obtained by the Cosmic Origins Spectrograph (COS) and the Space Telescope Imaging Spectrograph (STIS). These data will be packaged into "smart archives" according to target type and scientific themes to facilitate the construction of archival samples for common science uses. A new "quick look" capability will make the data easy for users to quickly access, assess the quality of, and download for archival science starting in Cycle 24, with the first generation of these products for the FUV modes of COS available online via MAST in early 2016.

Strength Measurements of Archive K Basin Sludge Using a Soil Penetrometer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Delegard, Calvin H.; Schmidt, Andrew J.; Chenault, Jeffrey W.

2011-12-06

Spent fuel radioactive sludge present in the K East and K West spent nuclear fuel storage basins now resides in the KW Basin in six large underwater engineered containers. The sludge will be dispositioned in two phases under the Sludge Treatment Project: (1) hydraulic retrieval into sludge transport and storage containers (STSCs) and transport to interim storage in Central Plateau and (2) retrieval from the STSCs, treatment, and packaging for shipment to the Waste Isolation Pilot Plant. In the years the STSCs are stored, sludge strength is expected to increase through chemical reaction, intergrowth of sludge crystals, and compaction andmore » dewatering by settling. Increased sludge strength can impact the type and operation of the retrieval equipment needed prior to final sludge treatment and packaging. It is important to determine whether water jetting, planned for sludge retrieval from STSCs, will be effective. Shear strength is a property known to correlate with the effectiveness of water jetting. Accordingly, the unconfined compressive strengths (UCS) of archive K Basin sludge samples and sludge blends were measured using a pocket penetrometer modified for hot cell use. Based on known correlations, UCS values can be converted to shear strengths. Twenty-six sludge samples, stored in hot cells for a number of years since last being disturbed, were identified as potential candidates for UCS measurement and valid UCS measurements were made for twelve, each of which was found as moist or water-immersed solids at least 1/2-inch deep. Ten of the twelve samples were relatively weak, having consistencies described as 'very soft' to 'soft'. Two of the twelve samples, KE Pit and KC-4 P250, were strong with 'very stiff' and 'stiff' consistencies described, respectively, as 'can be indented by a thumb nail' or 'can be indented by thumb'. Both of these sludge samples are composites collected from KE Basin floor and Weasel Pit locations. Despite both strong sludges having relatively high iron concentrations, attribution of their high strengths to this factor could not be made with confidence as other measured sludge samples, also from the KE Basin floor and of high iron concentration, were relatively weak. The observed UCS and shear strengths for the two strong sludges were greater than observed in any prior testing of K Basin sludge except for sludge processed at 185 C under hydrothermal conditions.« less

AmeriFlux Measurement Component (AMC) Instrument Handbook

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reichl, Ken; Biraud, Sebastien C.

2016-04-01

An AMC system was installed at the U.S. Department of Energy (DOE)’s Atmospheric Radiation Measurement (ARM) Climate Research Facility North Slope of Alaska (NSA) Barrow site, also known as NSA C1 at the ARM Data Archive, in August 2012. A second AMC system was installed at the third ARM Mobile Facility deployment at Oliktok Point, also known as NSA M1. This in situ system consists of 12 combination soil temperature and volumetric water content (VWC) reflectometers and one set of upwelling and downwelling photosynthetically active radiation (PAR) sensors, all deployed within the fetch of the Eddy Correlation Flux Measurement System.more » Soil temperature and VWC sensors placed at two depths (10 and 30 cm below the vegetation layer) at six locations (or microsites) allow soil property inhomogeneity to be monitored across a landscape.« less

Mobility of arsenic and its compounds in soil and soil solution: the effect of soil pretreatment and extraction methods.

PubMed

Száková, J; Tlustos, P; Goessler, W; Frková, Z; Najmanová, J

2009-12-30

The effect of soil extraction procedures and/or sample pretreatment (drying, freezing of the soil sample) on the extractability of arsenic and its compounds was tested. In the first part, five extraction procedures were compared with following order of extractable arsenic portions: 2M HNO(3)>0.43 M CH(3)COOH>or=0.05 M EDTA>or=Mehlich III (0.2M CH(3)COOH+0.25 M NH(4)NO(3)+0.013 M HNO(3)+0.015 M NH(4)F+0.001 M EDTA) extraction>water). Additionally, two methods of soil solution sampling were compared, centrifugation of saturated soil and the use of suction cups. The results showed that different sample pretreatments including soil solution sampling could lead to different absolute values of mobile arsenic content in soils. However, the interpretation of the data can lead to similar conclusions as apparent from the comparison of the soil solution sampling methods (r=0.79). For determination of arsenic compounds mild extraction procedures (0.05 M (NH(4))(2)SO(4), 0.01 M CaCl(2), and water) and soil solution sampling using suction cups were compared. Regarding the real soil conditions the extraction of fresh samples and/or in situ collection of soil solution are preferred among the sample pretreatments and/or soil extraction procedures. However, chemical stabilization of the solutions should be allowed and included in the analytical procedures for determination of individual arsenic compounds.

Influence of soil moisture on soil respiration

NASA Astrophysics Data System (ADS)

Fer, Miroslav; Kodesova, Radka; Nikodem, Antonin; Klement, Ales; Jelenova, Klara

2015-04-01

The aim of this work was to describe an impact of soil moisture on soil respiration. Study was performed on soil samples from morphologically diverse study site in loess region of Southern Moravia, Czech Republic. The original soil type is Haplic Chernozem, which was due to erosion changed into Regosol (steep parts) and Colluvial soil (base slope and the tributary valley). Soil samples were collected from topsoils at 5 points of the selected elevation transect and also from the parent material (loess). Grab soil samples, undisturbed soil samples (small - 100 cm3, and large - 713 cm3) and undisturbed soil blocks were taken. Basic soil properties were determined on grab soil samples. Small undisturbed soil samples were used to determine the soil water retention curves and the hydraulic conductivity functions using the multiple outflow tests in Tempe cells and a numerical inversion with HYDRUS 1-D. During experiments performed in greenhouse dry large undisturbed soil samples were wetted from below using a kaolin tank and cumulative water inflow due to capillary rise was measured. Simultaneously net CO2 exchange rate and net H2O exchange rate were measured using LCi-SD portable photosynthesis system with Soil Respiration Chamber. Numerical inversion of the measured cumulative capillary rise data using the HYDRUS-1D program was applied to modify selected soil hydraulic parameters for particular conditions and to simulate actual soil water distribution within each soil column in selected times. Undisturbed soil blocks were used to prepare thin soil sections to study soil-pore structure. Results for all soil samples showed that at the beginning of soil samples wetting the CO2 emission increased because of improving condition for microbes' activity. The maximum values were reached for soil column average soil water content between 0.10 and 0.15 cm3/cm3. Next CO2 emission decreased since the pore system starts filling by water (i.e. aggravated conditions for microbes, closing soil gas pathways etc.). In the case of H2O exchange rate, values increased with increasing soil water contents (up to 0.15-0.20 cm3/cm3) and then remained approximately constant. Acknowledgement: Authors acknowledge the financial support of the Ministry of Agriculture of the Czech Republic No. QJ1230319

Assessment of soil biological quality index (QBS-ar) in different crop rotation systems in paddy soils

NASA Astrophysics Data System (ADS)

Nadimi-Goki, Mandana; Bini, Claudio; haefele, Stephan

2013-04-01

New methods, based on soil microarthropods for soil quality evaluation have been proposed by some Authors. Soil microarthropods demonstrated to respond sensitively to land management practices and to be correlated with beneficial soil functions. QBS Index (QBS-ar) is calculated on the basis of microarthropod groups present in a soil sample. Each biological form found in the sample receives a score from 1 to 20 (eco-morphological index, EMI), according to its adaptation to soil environment. The objective of this study was to evaluate the effect of various rotation systems and sampling periods on soil biological quality index, in paddy soils. For the purpose of this study surface soil samples (0-15 cm depth) were collected from different rotation systems (rice-rice-rice, soya-rice-rice, fallow-rice and pea-soya-rice) with three replications, and four sampling times in April (after field preparation), June (after seedling), August (after tillering stage) and October (after rice harvesting). The study area is located in paddy soils of Verona area, Northern Italy. Soil microarthropods from a total of 48 samples were extracted and classified according to the Biological Quality of Soil Index (QBS-ar) method. In addition soil moisture, Cumulative Soil Respiration and pH were measured in each site. More diversity of microarthropod groups was found in June and August sampling times. T-test results between different rotations did not show significant differences while the mean difference between rotation and different sampling times is statistically different. The highest QBS-ar value was found in the fallow-rice rotation in the forth soil sampling time. Similar value was found in soya-rice-rice rotation. Result of linear regression analysis indicated that there is significant correlation between QBS-ar values and Cumulative Soil Respiration. Keywords: soil biological quality index (QBS-ar), Crop Rotation System, paddy soils, Italy

Soil Sampling Techniques For Alabama Grain Fields

NASA Technical Reports Server (NTRS)

Thompson, A. N.; Shaw, J. N.; Mask, P. L.; Touchton, J. T.; Rickman, D.

2003-01-01

Characterizing the spatial variability of nutrients facilitates precision soil sampling. Questions exist regarding the best technique for directed soil sampling based on a priori knowledge of soil and crop patterns. The objective of this study was to evaluate zone delineation techniques for Alabama grain fields to determine which method best minimized the soil test variability. Site one (25.8 ha) and site three (20.0 ha) were located in the Tennessee Valley region, and site two (24.2 ha) was located in the Coastal Plain region of Alabama. Tennessee Valley soils ranged from well drained Rhodic and Typic Paleudults to somewhat poorly drained Aquic Paleudults and Fluventic Dystrudepts. Coastal Plain s o i l s ranged from coarse-loamy Rhodic Kandiudults to loamy Arenic Kandiudults. Soils were sampled by grid soil sampling methods (grid sizes of 0.40 ha and 1 ha) consisting of: 1) twenty composited cores collected randomly throughout each grid (grid-cell sampling) and, 2) six composited cores collected randomly from a -3x3 m area at the center of each grid (grid-point sampling). Zones were established from 1) an Order 1 Soil Survey, 2) corn (Zea mays L.) yield maps, and 3) airborne remote sensing images. All soil properties were moderately to strongly spatially dependent as per semivariogram analyses. Differences in grid-point and grid-cell soil test values suggested grid-point sampling does not accurately represent grid values. Zones created by soil survey, yield data, and remote sensing images displayed lower coefficient of variations (8CV) for soil test values than overall field values, suggesting these techniques group soil test variability. However, few differences were observed between the three zone delineation techniques. Results suggest directed sampling using zone delineation techniques outlined in this paper would result in more efficient soil sampling for these Alabama grain fields.

Trichocomaceae: biodiversity of Aspergillus spp and Penicillium spp residing in libraries.

PubMed

Leite, Diniz Pereira; Yamamoto, Ana Caroline Akeme; Amadio, Janaína Vasconcellos Ribeiro de Souza; Martins, Evelin Rodrigues; do Santos, Fábio Alexandre Leal; Simões, Sara de Almeida Alves; Hahn, Rosane Christine

2012-10-19

Atmospheric air is the most common vehicle for the dispersion of fungi. Fungi belonging to the genera Aspergillus and Penicillium are cosmopolitan and are classified in the family Trichocomaceae. Species of the genera are commonly found in soil, decaying organic materials, animal feed, stored grains, and other materials. This study aimed to determine the taxonomic diversity of airborne fungi of the genera Aspergillus and Penicillium residing in the dust of library environments to contribute to current knowledge of these characteristic genera. Three libraries in the city of Cuiaba, State of Mato Grosso, Brazil, were selected as the study areas. A total of 168 samples were collected at randomized sites within each library in areas containing journals, archives, in study rooms, and in collection storage areas in two different periods, the dry season (n = 42)  and the rainy season (n = 42). Samples were collected by exposing Petri dishes containing Sabouraud agar with chloramphenicol to the environmental air. Additional samples were collected with sterile swabs which were rubbed over the surface of randomly chosen books on the shelves; the swabs were subsequently incubated in the laboratory. The genus Aspergillus was highlighted as one of the principal airborne fungi present in indoor environments. Aspergillus spp was identified in 1,277 (89.6%) samples and Penicillium spp in 148 (10.4%). The dry period exhibited a greater number of isolates of the two taxons.

Determination of the organic aerosol mass to organic carbon ratio in IMPROVE samples.

PubMed

El-Zanan, Hazem S; Lowenthal, Douglas H; Zielinska, Barbara; Chow, Judith C; Kumar, Naresh

2005-07-01

The ratio of organic mass (OM) to organic carbon (OC) in PM(2.5) aerosols at US national parks in the IMPROVE network was estimated experimentally from solvent extraction of sample filters and from the difference between PM(2.5) mass and chemical constituents other than OC (mass balance) in IMPROVE samples from 1988 to 2003. Archived IMPROVE filters from five IMPROVE sites were extracted with dichloromethane (DCM), acetone and water. The extract residues were weighed to determine OM and analyzed for OC by thermal optical reflectance (TOR). On average, successive extracts of DCM, acetone, and water contained 64%, 21%, and 15%, respectively, of the extractable OC, respectively. On average, the non-blank-corrected recovery of the OC initially measured in these samples by TOR was 115+/-42%. OM/OC ratios from the combined DCM and acetone extracts averaged 1.92 and ranged from 1.58 at Indian Gardens, AZ in the Grand Canyon to 2.58 at Mount Rainier, WA. The average OM/OC ratio determined by mass balance was 2.07 across the IMPROVE network. The sensitivity of this ratio to assumptions concerning sulfate neutralization, water uptake by hygroscopic species, soil mass, and nitrate volatilization were evaluated. These results suggest that the value of 1.4 for the OM/OC ratio commonly used for mass and light extinction reconstruction in IMPROVE is too low.

STABLE ISOPTOPE RATIOS IN ARCHIVED STRIPED BASS SCALES SUGGEST CHANGES IN TROPHIC STRUCTURE

EPA Science Inventory

Stable carbon isotope ratios were measured in archived striped bass, Morone saxatilis (Walbaum), scales to identify changes in the feeding behaviour of this species over time. Striped bass tissue and scale samples were collected from Rhode Island coastal waters during 1996 and ar...

Development and Validation of The SMAP Enhanced Passive Soil Moisture Product

NASA Technical Reports Server (NTRS)

Chan, S.; Bindlish, R.; O'Neill, P.; Jackson, T.; Chaubell, J.; Piepmeier, J.; Dunbar, S.; Colliander, A.; Chen, F.; Entekhabi, D.;

The TERRA-PNW Dataset: A New Source for Standardized Plant Trait, Forest Carbon Cycling, and Soil Properties Measurements from the Pacific Northwest US, 2000-2014.

NASA Astrophysics Data System (ADS)

Berner, L. T.; Law, B. E.

2015-12-01

Plant traits include physiological, morphological, and biogeochemical characteristics that in combination determine a species sensitivity to environmental conditions. Standardized, co-located, and geo-referenced species- and plot-level measurements are needed to address variation in species sensitivity to climate change impacts and for ecosystem process model development, parameterization and testing. We present a new database of plant trait, forest carbon cycling, and soil property measurements derived from multiple TERRA-PNW projects in the Pacific Northwest US, spanning 2000-2014. The database includes measurements from over 200 forest plots across Oregon and northern California, where the data were explicitly collected for scaling and modeling regional terrestrial carbon processes with models such as Biome-BGC and the Community Land Model. Some of the data are co-located at AmeriFlux sites in the region. The database currently contains leaf trait measurements (specific leaf area, leaf longevity, leaf carbon and nitrogen) from over 1,200 branch samples and 30 species, as well as plot-level biomass and productivity components, and soil carbon and nitrogen. Standardized protocols were used across projects, as summarized in an FAO protocols document. The database continues to expand and will include agricultural crops. The database will be hosted by the Oak Ridge National Laboratory (ORLN) Distributed Active Archive Center (DAAC). We hope that other regional databases will become publicly available to help enable Earth System Modeling to simulate species-level sensitivity to climate at regional to global scales.

The stratigraphic sequence of Scafati (Italy) - An archive of 10,000 years of volcanism, soil formation and land use in the shade of Mount Vesuvius

NASA Astrophysics Data System (ADS)

Maerker, Michael; Vogel, Sebastian; Hoelzmann, Phillip; Rellini, Ivano

2014-05-01

In this study we carried out a detailed lithostratigraphic, pedological and micromorphological analysis at a stratigraphic sequence close to Scafati, about 3 km east of ancient Pompeii. It consists of a multilayered succession of repeated volcanic deposition and pedogenesis caused by several phases of volcanic activity of Somma-Vesuvius and volcanic quiescence. This comprises, at least, the last 10,000 years of sedimentation history, on one hand, reflecting the entire spectrum of eruption types of Somma-Vesuvius from Plinian, sub-Plinian, rather small eruptions to effusive volcanic events and, on the other hand, soil formations of different durations, intensities and soil-forming environments. Furthermore, the paleosols repeatedly reveal clear evidence of anthropogenic activity by means of agriculture. Hence, a landscape evolution model was developed trying to reconstruct the last 10,000 years of volcanic activity, soil formation and land use in the hinterland of Pompeii.

Pedo-sedimentary constituents as paleoenvironmental proxies in the Sudano-Sahelian belt during the Late Quaternary (southwestern Chad Basin)

NASA Astrophysics Data System (ADS)

Diaz, Nathalie; Dietrich, Fabienne; Sebag, David; King, Georgina E.; Valla, Pierre G.; Durand, Alain; Garcin, Yannick; de Saulieu, Geoffroy; Deschamps, Pierre; Herman, Frédéric; Verrecchia, Eric P.

2018-07-01

Climate and environmental changes since the Last Glacial Maximum in the tropical zone of West Africa are usually inferred from marine and continental records. In this study, the potential of carbonate pedo-sedimentary geosystems, i.e. Vertisol relics, to record paleoenvironmental changes in the southwestern part of Chad Basin are investigated. A multi-dating approach was applied on different pedogenic organo-mineral constituents. Optically stimulated luminescence (OSL) dating was performed on the soil K-rich feldspars and was combined with radiocarbon dating on both the inorganic (14Cinorg) and organic carbon (14Corg) soil fractions. Three main pedo-sedimentary processes were assessed over the last 20 ka BP: 1) the soil parent material deposition, from 18 ka to 12 ka BP (OSL), 2) the soil organic matter integration, from 11 cal ka to 8 cal ka BP (14Corg), and 3) the pedogenic carbonate nodule precipitation, from 7 cal ka to 5 cal ka BP (14Cinorg). These processes correlate well with the Chad Basin stratigraphy and West African records and are shown to be related to significant changes in the soil water balance responding to the evolution of continental hydrology during the Late Quaternary. The last phase affecting the Vertisol relics is the increase of erosion, which is hypothesized to be due to a decrease of the vegetation cover triggered by (i) the onset of drier conditions, possibly strengthened by (ii) anthropogenic pressure. Archaeological data from Far North Cameroon and northern Nigeria, as well as sedimentation times in Lake Tilla (northeastern Nigeria), were used to test these relationships. The increase of erosion is suggested to possibly occur between c. 3 cal ka and 1 cal ka BP. Finally, satellite images revealed similar geosystems all along the Sudano-Sahelian belt, and initial 14Cinorg ages of the samples collected in four sites gave similar ages to those reported in this study. Consequently, the carbonate pedo-sedimentary geosystems are valuable continental paleoenvironmental archives and soil water balance proxies of the semiarid tropics of West Africa.

Addressing numerical challenges in introducing a reactive transport code into a land surface model: A biogeochemical modeling proof-of-concept with CLM-PFLOTRAN 1.0: Modeling Archive

DOE Data Explorer

Tang, G.; Andre, B.; Hoffman, F. M.; Painter, S. L.; Thornton, P. E.; Yuan, F.; Bisht, G.; Hammond, G. E.; Lichtner, P. C.; Kumar, J.; Mills, R. T.; Xu, X.

2016-04-19

This Modeling Archive is in support of an NGEE Arctic discussion paper under review and available at doi:10.5194/gmd-9-927-2016. The purpose is to document the simulations to allow verification, reproducibility, and follow-up studies. This dataset contains shell scripts to create the CLM-PFLOTRAN cases, specific input files for PFLOTRAN and CLM, outputs, and python scripts to make the figures using the outputs in the publication. Through these results, we demonstrate that CLM-PFLOTRAN can approximately reproduce CLM results in selected cases for the Arctic, temperate and tropic sites. In addition, the new framework facilitates mechanistic representations of soil biogeochemistry processes in the land surface model.

The evolutionary time machine: forecasting how populations can adapt to changing environments using dormant propagules

PubMed Central

Orsini, Luisa; Schwenk, Klaus; De Meester, Luc; Colbourne, John K.; Pfrender, Michael E.; Weider, Lawrence J.

2013-01-01

Evolutionary changes are determined by a complex assortment of ecological, demographic and adaptive histories. Predicting how evolution will shape the genetic structures of populations coping with current (and future) environmental challenges has principally relied on investigations through space, in lieu of time, because long-term phenotypic and molecular data are scarce. Yet, dormant propagules in sediments, soils and permafrost are convenient natural archives of population-histories from which to trace adaptive trajectories along extended time periods. DNA sequence data obtained from these natural archives, combined with pioneering methods for analyzing both ecological and population genomic time-series data, are likely to provide predictive models to forecast evolutionary responses of natural populations to environmental changes resulting from natural and anthropogenic stressors, including climate change. PMID:23395434

Mars 2001 Lander Mission: Measurement Synergy Through Coordinated Operations Planning And Implementation

NASA Astrophysics Data System (ADS)

Arvidson, R.; Bell, J. F., III; Kaplan, D.; Marshall, J.; Mishkin, A.; Saunders, S.; Smith, P.; Squyres, S.

1999-09-01

The 2001 Mars Surveyor Program Mission includes an orbiter with a gamma ray spectrometer and a multispectral thermal imager, and a lander with an extensive set of instrumentation, a robotic arm, and the Marie Curie Rover. The Mars 2001 Science Operations Working Group (SOWG) is a subgroup of the Project Science Group that has been formed to provide coordinated planning and implementation of scientific observations, particularly for the landed portion of the mission. The SOWG will be responsible for delivery of a science plan and, during operations, generation and delivery of conflict-free sequences. This group will also develop an archive plan that is compliant with Planetary Data System (PDS) standards, and will oversee generation, validation, and delivery of integrated archives to the PDS. In this report we cover one element of the SOWG planning activities, the development of a plan that maximizes the scientific return from lander-based observations by treating the instrument packages as an integrated payload. Scientific objectives for the lander mission have been defined. They include observations focused on determining the bedrock geology of the site through analyses of rocks and also local materials found in the soils, and the surficial geology of the site, including windblown deposits and the nature and history of formation of indurated sediments such as duricrust. Of particular interest is the identification and quantification of processes related to early warm, wet conditions and the presence of hydrologic or hydrothermal cycles. Determining the nature and origin of duricrust and associated salts is -very important in this regard. Specifically, did these deposits form in the vadose zone as pore water evaporated from soils or did they form by other processes, such as deposition of volcanic aerosols? Basic information needed to address these questions includes the morphology, topography, and geologic context of landforms and materials exposed at the site, together with quantitative information on material mineralogy, chemistry, and physical properties (rock textures; soil grain size and shape distributions; degree and nature of soil induration; soil magnetic properties). The calibration targets provide radiometric and mineralogical control surfaces. The magnets allow observations of magnetic phases. Patch plates are imaged to determine adhesive and abrasive properties of soils. Coordinated mission planning is crucial for optimizing the measurement synergy among the packages included on the lander. This planning has already begun through generation of multi-sol detailed operations activities. One focus has been to develop a scenario to use the arm to dig a soil trench to a depth of tens of centimeters. The activity will be monitored through use of Pancam and RAC to ensure nominal operations and to acquire data to determine subsurface physical properties (e.g., angle of repose of trench walls). Pancam and Mini-TES observations would also provide constraints on mineralogy and texture for the walls and bottom of the trench during excavation. If desired, soils excavated at depth could be deposited on the surface and Mossbauer and APXS measurements could be acquired for these materials. Soil samples from various depths would be delivered to MECA for characterization of aqueous geochemistry and physical properties of soil grains, particularly size, shape, and hardness. These physical properties would be determined by optical and atomic force microscopy. When completed, detailed information of soil properties as a function of depth would be obtained. These various data sets would constrain our understanding of whether or not there are systematic variations in soil characteristics as a function of depth. These variations might be related, for example, to evaporative moisture losses and formation of salt deposits, thereby indicating water transport processes occurred fairly recently. Many other value-added measurement scenarios are being developed. For example, characterizing the nature and dynamics of dust deposition will be done using MIP/DART to provide deposition rates, Pancam and RAC imaging of lander and rover surfaces to extrapolate these measurements to other areas, and a variety of measurements to determine if the bulk loose soil has the same characteristics as dust that accumulates during the mission. Bedrock geology of the site is primarily an APEX-focus setting, mineralogy, and texture, and APXS data to be we interest will be to determine the extent to which rock hydrothermal processes, given that APEX is the precursor 4 and 2005 rover missions. Additional information is contained in the original.

Mars 2001 Lander Mission: Measurement Synergy Through Coordinated Operations Planning And Implementation

NASA Technical Reports Server (NTRS)

Arvidson, R.; Bell, J. F., III; Kaplan, D.; Marshall, J.; Mishkin, A.; Saunders, S.; Smith, P.; Squyres, S.

1999-01-01

The 2001 Mars Surveyor Program Mission includes an orbiter with a gamma ray spectrometer and a multispectral thermal imager, and a lander with an extensive set of instrumentation, a robotic arm, and the Marie Curie Rover. The Mars 2001 Science Operations Working Group (SOWG) is a subgroup of the Project Science Group that has been formed to provide coordinated planning and implementation of scientific observations, particularly for the landed portion of the mission. The SOWG will be responsible for delivery of a science plan and, during operations, generation and delivery of conflict-free sequences. This group will also develop an archive plan that is compliant with Planetary Data System (PDS) standards, and will oversee generation, validation, and delivery of integrated archives to the PDS. In this report we cover one element of the SOWG planning activities, the development of a plan that maximizes the scientific return from lander-based observations by treating the instrument packages as an integrated payload. Scientific objectives for the lander mission have been defined. They include observations focused on determining the bedrock geology of the site through analyses of rocks and also local materials found in the soils, and the surficial geology of the site, including windblown deposits and the nature and history of formation of indurated sediments such as duricrust. Of particular interest is the identification and quantification of processes related to early warm, wet conditions and the presence of hydrologic or hydrothermal cycles. Determining the nature and origin of duricrust and associated salts is -very important in this regard. Specifically, did these deposits form in the vadose zone as pore water evaporated from soils or did they form by other processes, such as deposition of volcanic aerosols? Basic information needed to address these questions includes the morphology, topography, and geologic context of landforms and materials exposed at the site, together with quantitative information on material mineralogy, chemistry, and physical properties (rock textures; soil grain size and shape distributions; degree and nature of soil induration; soil magnetic properties). The calibration targets provide radiometric and mineralogical control surfaces. The magnets allow observations of magnetic phases. Patch plates are imaged to determine adhesive and abrasive properties of soils. Coordinated mission planning is crucial for optimizing the measurement synergy among the packages included on the lander. This planning has already begun through generation of multi-sol detailed operations activities. One focus has been to develop a scenario to use the arm to dig a soil trench to a depth of tens of centimeters. The activity will be monitored through use of Pancam and RAC to ensure nominal operations and to acquire data to determine subsurface physical properties (e.g., angle of repose of trench walls). Pancam and Mini-TES observations would also provide constraints on mineralogy and texture for the walls and bottom of the trench during excavation. If desired, soils excavated at depth could be deposited on the surface and Mossbauer and APXS measurements could be acquired for these materials. Soil samples from various depths would be delivered to MECA for characterization of aqueous geochemistry and physical properties of soil grains, particularly size, shape, and hardness. These physical properties would be determined by optical and atomic force microscopy. When completed, detailed information of soil properties as a function of depth would be obtained. These various data sets would constrain our understanding of whether or not there are systematic variations in soil characteristics as a function of depth. These variations might be related, for example, to evaporative moisture losses and formation of salt deposits, thereby indicating water transport processes occurred fairly recently. Many other value-added measurement scenarios are being developed. For example, characterizing the nature and dynamics of dust deposition will be done using MIP/DART to provide deposition rates, Pancam and RAC imaging of lander and rover surfaces to extrapolate these measurements to other areas, and a variety of measurements to determine if the bulk loose soil has the same characteristics as dust that accumulates during the mission. Bedrock geology of the site is primarily an APEX-focus setting, mineralogy, and texture, and APXS data to be we interest will be to determine the extent to which rock hydrothermal processes, given that APEX is the precursor 4 and 2005 rover missions. Additional information is contained in the original.

The electronic Rothamsted Archive (e-RA), an online resource for data from the Rothamsted long-term experiments.

PubMed

Perryman, Sarah A M; Castells-Brooke, Nathalie I D; Glendining, Margaret J; Goulding, Keith W T; Hawkesford, Malcolm J; Macdonald, Andy J; Ostler, Richard J; Poulton, Paul R; Rawlings, Christopher J; Scott, Tony; Verrier, Paul J

2018-05-15

The electronic Rothamsted Archive, e-RA (www.era.rothamsted.ac.uk) provides a permanent managed database to both securely store and disseminate data from Rothamsted Research's long-term field experiments (since 1843) and meteorological stations (since 1853). Both historical and contemporary data are made available via this online database which provides the scientific community with access to a unique continuous record of agricultural experiments and weather measured since the mid-19 th century. Qualitative information, such as treatment and management practices, plans and soil information, accompanies the data and are made available on the e-RA website. e-RA was released externally to the wider scientific community in 2013 and this paper describes its development, content, curation and the access process for data users. Case studies illustrate the diverse applications of the data, including its original intended purposes and recent unforeseen applications. Usage monitoring demonstrates the data are of increasing interest. Future developments, including adopting FAIR data principles, are proposed as the resource is increasingly recognised as a unique archive of data relevant to sustainable agriculture, agroecology and the environment.

Worldwide Organic Soil Carbon and Nitrogen Data (1986) (NDP-018)

DOE Data Explorer

Zinke, P. J. [Univ. of California, Berkeley, CA (United States); Stangenberger, A. G. [Univ. of California, Berkeley, CA (United States); Post, W. M. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Emanuel, W. R. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Olson, J. S. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Millemann, R. E. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Boden, T. A. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

1986-01-01

This data base was begun with the collection and analysis of soil samples from California. Additional data came from soil surveys of Italy, Greece, Iran, Thailand, Vietnam, various tropical Amazonian areas, and U.S. forests and from the soil-survey literature. The analyzed samples were collected at uniform soil-depth increments and included bulk-density determinations. The data on each sample are soil profile number; soil profile carbon content; soil profile nitrogen content; sampling site latitude and longitude; site elevation; profile literature reference source; and soil profile codes for Holdridge life zone, Olson ecosystem type, and parent material. These data may be used to estimate the size of the soil organic carbon and nitrogen pools at equilibrium with natural soil-forming factors.

Chemical Analysis Results for Potable Water from ISS Expeditions 21 Through 25

NASA Technical Reports Server (NTRS)

Straub, John E., II; Plumlee, Debrah K.; Schultz, John R.; McCoy, J. Torin

2011-01-01

The Johnson Space Center Water and Food Analytical Laboratory (WAFAL) performed detailed ground-based analyses of archival water samples for verification of the chemical quality of the International Space Station (ISS) potable water supplies for Expeditions 21 through 25. Over a 14-month period the Space Shuttle visited the ISS on four occasions to complete construction and deliver supplies. The onboard supplies of potable water available for consumption by the Expeditions 21 to 25 crews consisted of Russian ground-supplied potable water, Russian potable water regenerated from humidity condensate, and US potable water recovered from urine distillate and condensate. Chemical archival water samples that were collected with U.S. hardware during Expeditions 21 to 25 were returned on Shuttle flights STS-129 (ULF3), STS-130 (20A), STS-131 (19A), and STS-132 (ULF4), as well as on Soyuz flights 19-23. This paper reports the analytical results for these returned potable water archival samples and their compliance with ISS water quality standards.

Non-labile silver species in biosolids remain stable throughout ...

EPA Pesticide Factsheets

Increasing commercial use of nanosilver has focussed attention on the fate of silver (Ag) in the wastewater release pathway. This paper reports the speciation and lability of Ag in archived, stockpiled, and contemporary biosolids from the UK, USA and Australia, and indicates that biosolids Ag concentrations have decreased significantly over recent decades. XANES revealed the importance of reduced-sulfur binding environments for Ag speciation in materials ranging from freshly produced sludge to biosolids weathered under ambient environmental conditions for more than 50 years. Isotopic dilution with 110mAg showed that Ag was predominantly non-labile in both fresh and aged biosolids (13.7% mean lability), with E-values ranging from 0.3 to 60 mg/kg and 5 mM CaNO3 extractable Ag from 1.2 to 609 µg/kg (0.002 - 3.4% of the total Ag). This study indicates that at the time of soil application, biosolids Ag will be predominantly Ag-sulfides and characterised by low isotopic lability. This paper presents an overview of biosolids Ag chemistry in historic and contemporary biosolids sourced from the UK, USA and Australia from the 1950s until today by drawing on a unique collection of archived, stockpiled and contemporary biosolids samples. Characteristics of biosolids Ag chemistry determined in this study included total Ag measurement by neutron activation analysis (NAA); the assessment of Ag lability by 110mAg isotopic dilution (E-values); and Ag speciation by X-ray Absorp

The GIK-Archive of sediment core radiographs with documentation

NASA Astrophysics Data System (ADS)

Grobe, Hannes; Winn, Kyaw; Werner, Friedrich; Driemel, Amelie; Schumacher, Stefanie; Sieger, Rainer

2017-12-01

The GIK-Archive of radiographs is a collection of X-ray negative and photographic images of sediment cores based on exposures taken since the early 1960s. During four decades of marine geological work at the University of Kiel, Germany, several thousand hours of sampling, careful preparation and X-raying were spent on producing a unique archive of sediment radiographs from several parts of the World Ocean. The archive consists of more than 18 500 exposures on chemical film that were digitized, geo-referenced, supplemented with metadata and archived in the data library PANGAEA®. With this publication, the images have become available open-access for use by the scientific community at https://doi.org/10.1594/PANGAEA.854841.

The Paleoclimate Uncertainty Cascade: Tracking Proxy Errors Via Proxy System Models.

NASA Astrophysics Data System (ADS)

Emile-Geay, J.; Dee, S. G.; Evans, M. N.; Adkins, J. F.

2014-12-01

Paleoclimatic observations are, by nature, imperfect recorders of climate variables. Empirical approaches to their calibration are challenged by the presence of multiple sources of uncertainty, which may confound the interpretation of signals and the identifiability of the noise. In this talk, I will demonstrate the utility of proxy system models (PSMs, Evans et al, 2013, 10.1016/j.quascirev.2013.05.024) to quantify the impact of all known sources of uncertainty. PSMs explicitly encode the mechanistic knowledge of the physical, chemical, biological and geological processes from which paleoclimatic observations arise. PSMs may be divided into sensor, archive and observation components, all of which may conspire to obscure climate signals in actual paleo-observations. As an example, we couple a PSM for the δ18O of speleothem calcite to an isotope-enabled climate model (Dee et al, submitted) to analyze the potential of this measurement as a proxy for precipitation amount. A simple soil/karst model (Partin et al, 2013, 10.1130/G34718.1) is used as sensor model, while a hiatus-permitting chronological model (Haslett & Parnell, 2008, 10.1111/j.1467-9876.2008.00623.x) is used as part of the observation model. This subdivision allows us to explicitly model the transformation from precipitation amount to speleothem calcite δ18O as a multi-stage process via a physical and chemical sensor model, and a stochastic archive model. By illustrating the PSM's behavior within the context of the climate simulations, we show how estimates of climate variability may be affected by each submodel's transformation of the signal. By specifying idealized climate signals(periodic vs. episodic, slow vs. fast) to the PSM, we investigate how frequency and amplitude patterns are modulated by sensor and archive submodels. To the extent that the PSM and the climate models are representative of real world processes, then the results may help us more accurately interpret existing paleodata, characterize their uncertainties, and design sampling strategies that exploit their strengths while mitigating their weaknesses.

The SHADOZ Data Base: History, Archive Web Guide, and Sample Climatologies

NASA Technical Reports Server (NTRS)

White, J. C.; Thompson, A. M.; Einaudi, Franco (Technical Monitor)

2000-01-01

SHADOZ (Southern Hemisphere Additional Ozonesonde) is a project to augment and archive ozonesonde data from ten tropical and subtropical ozone stations. Started in 1998 by NASA's Goddard Space Flight Center and other US and international co-investigators, SHADOZ is an important tool for tropospheric ozone research in the equatorial region. The rationale for SHADOZ is to: (1) validate and improve remote sensing techniques (e.g., the Total Ozone Mapping Spectrometer (TOMS) satellite) for estimating tropical ozone, (2) contribute to climatology and trend analyses of tropical ozone and (3) provide research topics to scientists and educate students, especially in participating countries. SHADOZ is envisioned as a data service to the global scientific community by providing a central public archive location via the internet: http://code9l6.gsfc.nasa.gov/Data_services/shadoz. While the SHADOZ website maintains a standard data format for the archive, it also informs the data users on the differing stations' preparation techniques and data treatment. The presentation navigates through the SHADOZ website to access each station's sounding data and summarize each station's characteristics. Since the start of the project in 1998, the SHADOZ archive has accumulated over 600 ozonesonde profiles and received over 30,000 outside data requests. Data also includes launches from various SHADOZ supported field campaigns, such as, the Indian Ocean Experiment (INDOEX), Sounding of Ozone and Water in the Equatorial Region (SOWER) and Aerosols99 Atlantic Cruise. Using data from the archive, sample climatologies and profiles from selected stations and campaigns will be shown.

In-depth investigation of archival and prospectively collected samples reveals no evidence for XMRV infection in prostate cancer.

PubMed

Lee, Deanna; Das Gupta, Jaydip; Gaughan, Christina; Steffen, Imke; Tang, Ning; Luk, Ka-Cheung; Qiu, Xiaoxing; Urisman, Anatoly; Fischer, Nicole; Molinaro, Ross; Broz, Miranda; Schochetman, Gerald; Klein, Eric A; Ganem, Don; Derisi, Joseph L; Simmons, Graham; Hackett, John; Silverman, Robert H; Chiu, Charles Y

2012-01-01

XMRV, or xenotropic murine leukemia virus (MLV)-related virus, is a novel gammaretrovirus originally identified in studies that analyzed tissue from prostate cancer patients in 2006 and blood from patients with chronic fatigue syndrome (CFS) in 2009. However, a large number of subsequent studies failed to confirm a link between XMRV infection and CFS or prostate cancer. On the contrary, recent evidence indicates that XMRV is a contaminant originating from the recombination of two mouse endogenous retroviruses during passaging of a prostate tumor xenograft (CWR22) in mice, generating laboratory-derived cell lines that are XMRV-infected. To confirm or refute an association between XMRV and prostate cancer, we analyzed prostate cancer tissues and plasma from a prospectively collected cohort of 39 patients as well as archival RNA and prostate tissue from the original 2006 study. Despite comprehensive microarray, PCR, FISH, and serological testing, XMRV was not detected in any of the newly collected samples or in archival tissue, although archival RNA remained XMRV-positive. Notably, archival VP62 prostate tissue, from which the prototype XMRV strain was derived, tested negative for XMRV on re-analysis. Analysis of viral genomic and human mitochondrial sequences revealed that all previously characterized XMRV strains are identical and that the archival RNA had been contaminated by an XMRV-infected laboratory cell line. These findings reveal no association between XMRV and prostate cancer, and underscore the conclusion that XMRV is not a naturally acquired human infection.

Soil forensics: How far can soil clay analysis distinguish between soil vestiges?

PubMed

Corrêa, R S; Melo, V F; Abreu, G G F; Sousa, M H; Chaker, J A; Gomes, J A

2018-03-01

Soil traces are useful as forensic evidences because they frequently adhere to individuals and objects associated with crimes and can place or discard a suspect at/from a crime scene. Soil is a mixture of organic and inorganic components and among them soil clay contains signatures that make it reliable as forensic evidence. In this study, we hypothesized that soils can be forensically distinguished through the analysis of their clay fraction alone, and that samples of the same soil type can be consistently distinguished according to the distance they were collected from each other. To test these hypotheses 16 Oxisol samples were collected at distances of between 2m and 1.000m, and 16 Inceptisol samples were collected at distances of between 2m and 300m from each other. Clay fractions were extracted from soil samples and analyzed for hyperspectral color reflectance (HSI), X-ray diffraction crystallographic (XRD), and for contents of iron oxides, kaolinite and gibbsite. The dataset was submitted to multivariate analysis and results were from 65% to 100% effective to distinguish between samples from the two soil types. Both soil types could be consistently distinguished for forensic purposes according to the distance that samples were collected from each other: 1000m for Oxisol and 10m for Inceptisol. Clay color and XRD analysis were the most effective techniques to distinguish clay samples, and Inceptisol samples were more easily distinguished than Oxisol samples. Soil forensics seems a promising field for soil scientists as soil clay can be useful as forensic evidence by using routine analytical techniques from soil science. Copyright © 2017 The Chartered Society of Forensic Sciences. Published by Elsevier B.V. All rights reserved.

Visible-near infrared spectroscopy as a tool to improve mapping of soil properties

NASA Astrophysics Data System (ADS)

Evgrafova, Alevtina; Kühnel, Anna; Bogner, Christina; Haase, Ina; Shibistova, Olga; Guggenberger, Georg; Tananaev, Nikita; Sauheitl, Leopold; Spielvogel, Sandra

2017-04-01

Spectroscopic measurements, which are non-destructive, precise and rapid, can be used to predict soil properties and help estimate the spatial variability of soil properties at the pedon scale. These estimations are required for quantifying soil properties with higher precision, identifying the changes in soil properties and ecosystem response to climate change as well as increasing the estimation accuracy of soil-related models. Our objectives were to (i) predict soil properties for nested samples (n = 296) using the laboratory-based visible-near infrared (vis-NIR) spectra of air-dried (<2 mm) soil samples and values of measured soil properties for gridded samples (n = 174) as calibration and validation sets; (ii) estimate the precision and predictive accuracy of an empirical spectral model using (a) our own spectral library and (b) the global spectral library; (iii) support the global spectral library with obtained vis-NIR spectral data on permafrost-affected soils. The soil samples were collected from three permafrost-affected soil profiles underlain by permafrost at various depths between 23 cm to 57.5 cm below the surface (Cryosols) and one soil profile with no presence of permafrost within the upper 100 cm layer (Cambisol) in order to characterize the spatial distribution and variability of soil properties. The gridded soil samples (n = 174) were collected using an 80 cm wide grid with a mesh size of 10 cm on both axes. In addition, 300 nested soil samples were collected using a grid of 12 cm by 12 cm (25 samples per grid) from a hole of 1 cm in a diameter with a distance from the next sample of 1 cm. Due to a small amount of available soil material (< 1.5 g), 296 nested soil samples were analyzed only using vis-NIR spectroscopy. The air-dried mineral gridded soil samples (n = 174) were sieved through a 2-mm sieve and ground with an agate mortar prior to the elemental analysis. The soil organic carbon and total nitrogen concentrations (in %) were determined using a dry combustion method on the Vario EL cube analyzer (Elementar Analysensysteme GmbH, Germany). Inorganic C was removed from the mineral soil samples with pH values higher than 7 prior to the elemental analysis using the volatilization method (HCl, 6 hours). The pH of soil samples was measured in 0.01 M CaCl2 using a 1:2 soil:solution ratio. However, for soil sample with a high in organic matter content, a 1:10 ratio was applied. We also measured oxalate and dithionite extracted iron, aluminum and manganese oxides and hydroxides using inductively coupled plasma optical emission spectroscopy (Varian Vista MPX ICP-OES, Agilent Technologies, USA). We predicted the above-mentioned soil properties for all nested samples using partial least squares regression, which was performed using R program. We can conclude that vis-NIR spectroscopy can be used effectively in order to describe, estimate and further map the spatial patterns of soil properties using geostatistical methods. This research could also help to improve the global soil spectral library taking into account that only few previous applications of vis-NIR spectroscopy were conducted on permafrost-affected soils of Northern Siberia. Keywords: Visible-near infrared spectroscopy, vis-NIR, permafrost-affected soils, Siberia, partial least squares regression.

76 FR 50133 - National Oil and Hazardous Substances Pollution Contingency Plan; National Priorities List...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-12

... (NCDOH) collected soil samples from the Site. Analyses of the samples indicated that the soils were... Metcalf and Eddy, Inc. for Commander in 1990. During the RI subsurface soil samples, ground water samples and surface soil samples were collected and analyzed. As part of the ground water investigation...

Assessing NIR & MIR Spectral Analysis as a Method for Soil C Estimation Across a Network of Sampling Sites

NASA Astrophysics Data System (ADS)

Spencer, S.; Ogle, S.; Borch, T.; Rock, B.

2008-12-01

Monitoring soil C stocks is critical to assess the impact of future climate and land use change on carbon sinks and sources in agricultural lands. A benchmark network for soil carbon monitoring of stock changes is being designed for US agricultural lands with 3000-5000 sites anticipated and re-sampling on a 5- to10-year basis. Approximately 1000 sites would be sampled per year producing around 15,000 soil samples to be processed for total, organic, and inorganic carbon, as well as bulk density and nitrogen. Laboratory processing of soil samples is cost and time intensive, therefore we are testing the efficacy of using near-infrared (NIR) and mid-infrared (MIR) spectral methods for estimating soil carbon. As part of an initial implementation of national soil carbon monitoring, we collected over 1800 soil samples from 45 cropland sites in the mid-continental region of the U.S. Samples were processed using standard laboratory methods to determine the variables above. Carbon and nitrogen were determined by dry combustion and inorganic carbon was estimated with an acid-pressure test. 600 samples are being scanned using a bench- top NIR reflectance spectrometer (30 g of 2 mm oven-dried soil and 30 g of 8 mm air-dried soil) and 500 samples using a MIR Fourier-Transform Infrared Spectrometer (FTIR) with a DRIFT reflectance accessory (0.2 g oven-dried ground soil). Lab-measured carbon will be compared to spectrally-estimated carbon contents using Partial Least Squares (PLS) multivariate statistical approach. PLS attempts to develop a soil C predictive model that can then be used to estimate C in soil samples not lab-processed. The spectral analysis of soil samples either whole or partially processed can potentially save both funding resources and time to process samples. This is particularly relevant for the implementation of a national monitoring network for soil carbon. This poster will discuss our methods, initial results and potential for using NIR and MIR spectral approaches to either replace or augment traditional lab-based carbon analyses of soils.

Past Holocene detritism quantification and modeling from lacustrine archives in order to deconvoluate human-climate interactions on natural ecosystem over long time-scale

NASA Astrophysics Data System (ADS)

Simonneau, Anaëlle; Chapron, Emmanuel; Di Giovanni, Christian; Galop, Didier; Darboux, Frédéric

2014-05-01

Water budget is one of the main challenges to paleoclimate researchers in relation to present-day global warming and its consequences for human societies. Associated soil degradation and erosion are thereby becoming a major concern in many parts of the world and more particularly in the Alps. Moreover, humans are considered as geomorphologic agents since few thousand years and it is now recognized that such an impact on natural ecosystem profoundly modified soils properties as well as aquatic ecosystems dynamics over long-term periods. The quantification of such inference over long time-scale is therefore essential to establish new policies to reduce mechanic soil erosion, which is one of the dominant processes in Europe, and anticipate the potential consequences of future climate change on hydric erosion. The mechanical erosion of continental surfaces results from climatic forcing, but can be amplified by the anthropogenic one. We therefore suggest that quantifying and modelling soil erosion processes within comparable Holocene lacustrine archives, allows to estimate and date which and when past human activities have had an impact on soil fluxes over the last 10000 years. Based on the present-day geomorphology of the surrounding watershed and the evolution of the vegetation cover during the Holocene, we develop an interdisciplinary approach combining quantitative organic petrography (i.e. optical characterization and quantification of soil particles within lake sediments) with high-resolution seismic profiling, age-depth models on lacustrine sediment cores and soil erosional susceptibility modeling, in order to estimate the annual volume of soil eroded over the last 10000 years, and in fine to quantify the volume of human-induced soil erosion during the Holocene period. This method is applied to close but contrasted mountainous lacustrine environments from the western French Alps: lakes Blanc Huez and Paladru, sensitive to same climatic influences but where past human activities were different (mining versus agriculture, respectively). Lakes Blanc Huez and Paladru are defined by good Holocene chronologies and well detailed lithologies (1, 2). Both archaeological evidences and interdisciplinary characterizations of the two systems demonstrated that Lake Blanc Huez sedimentary infill is only sensitive to climate forcing and that soil fluxes are therefore only proportional to snow and/or water rainfalls (1), whereas the sedimentation recorded within Lake Paladru results both from climate and anthropogenic forcing. Results demonstrate that around Lake Paladru, human-induced soil erosion is effective since the Neolithic period and the beginning of agrarian activities (2). Following our quantification and modelling, human activities were able to explain up to 50% of soil fluxes in particular between the Bronze Age and the Middle Age suggesting that the actual geomorphology of the drainage basin is inherited from several millenary and not only from modern activities. (1) Simonneau et al., accepted, Quaternary Science Reviews (2) Simonneau et al., 2013, Journal of Archaeological Science, 40: 1636-1645.

Extracting DNA from 'jaws': high yield and quality from archived tiger shark (Galeocerdo cuvier) skeletal material.

PubMed

Nielsen, E E; Morgan, J A T; Maher, S L; Edson, J; Gauthier, M; Pepperell, J; Holmes, B J; Bennett, M B; Ovenden, J R

2017-05-01

Archived specimens are highly valuable sources of DNA for retrospective genetic/genomic analysis. However, often limited effort has been made to evaluate and optimize extraction methods, which may be crucial for downstream applications. Here, we assessed and optimized the usefulness of abundant archived skeletal material from sharks as a source of DNA for temporal genomic studies. Six different methods for DNA extraction, encompassing two different commercial kits and three different protocols, were applied to material, so-called bio-swarf, from contemporary and archived jaws and vertebrae of tiger sharks (Galeocerdo cuvier). Protocols were compared for DNA yield and quality using a qPCR approach. For jaw swarf, all methods provided relatively high DNA yield and quality, while large differences in yield between protocols were observed for vertebrae. Similar results were obtained from samples of white shark (Carcharodon carcharias). Application of the optimized methods to 38 museum and private angler trophy specimens dating back to 1912 yielded sufficient DNA for downstream genomic analysis for 68% of the samples. No clear relationships between age of samples, DNA quality and quantity were observed, likely reflecting different preparation and storage methods for the trophies. Trial sequencing of DNA capture genomic libraries using 20 000 baits revealed that a significant proportion of captured sequences were derived from tiger sharks. This study demonstrates that archived shark jaws and vertebrae are potential high-yield sources of DNA for genomic-scale analysis. It also highlights that even for similar tissue types, a careful evaluation of extraction protocols can vastly improve DNA yield. © 2016 John Wiley & Sons Ltd.

BOREAS TE-6 Biomass and Foliage Area Data

NASA Technical Reports Server (NTRS)

Hall, Forrest G. (Editor); Papagno, Andrea (Editor); Gower, Stith T.; Vogel, Jason G.

2000-01-01

The BOREAS TE-6 team collected several data sets in support of its efforts to characterize and interpret information on the plant biomass, allometry, biometry, sapwood, leaf area index, net primary production, soil temperature, leaf water potential, soil CO, flux, and multivegetation imagery of boreal vegetation. This data set contains measurements of estimates of the standing biomass and leaf area index for the plant species at the TF, CEV, and AUX sites in the SSA and NSA during the growing seasons of 1994 and 1995. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Activity Archive Center (DAAC).

BOREAS TE-6 1994 Soil and Air Temperatures in the NSA

NASA Technical Reports Server (NTRS)

Hall, Forrest G. (Editor); Curd, Shelaine (Editor); Norman, John; Wilson, Tim

2000-01-01

The BOREAS TE-6 team collected several data sets to examine the influence of vegetation, climate, and their interactions on the major carbon fluxes for boreal forest species. This data set contains measurements of the air temperature at a single height and soil temperature at several depths in the NSA from 25-May to 08-Oct- 1994. Chromel-Constantan thermocouple wires run by a miniprogrammable data logger (Model 21X, Campbell Scientific, Inc., Logan, UT) provided direct measurements of temperature. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distrobuted Activity Archive Center (DAAC).

Preliminary assessment of an economical fugitive road dust sampler for the collection of bulk samples for geochemical analysis.

PubMed

Witt, Emitt C; Wronkiewicz, David J; Shi, Honglan

2013-01-01

Fugitive road dust collection for chemical analysis and interpretation has been limited by the quantity and representativeness of samples. Traditional methods of fugitive dust collection generally focus on point-collections that limit data interpretation to a small area or require the investigator to make gross assumptions about the origin of the sample collected. These collection methods often produce a limited quantity of sample that may hinder efforts to characterize the samples by multiple geochemical techniques, preserve a reference archive, and provide a spatially integrated characterization of the road dust health hazard. To achieve a "better sampling" for fugitive road dust studies, a cyclonic fugitive dust (CFD) sampler was constructed and tested. Through repeated and identical sample collection routes at two collection heights (50.8 and 88.9 cm above the road surface), the products of the CFD sampler were characterized using particle size and chemical analysis. The average particle size collected by the cyclone was 17.9 μm, whereas particles collected by a secondary filter were 0.625 μm. No significant difference was observed between the two sample heights tested and duplicates collected at the same height; however, greater sample quantity was achieved at 50.8 cm above the road surface than at 88.9 cm. The cyclone effectively removed 94% of the particles >1 μm, which substantially reduced the loading on the secondary filter used to collect the finer particles; therefore, suction is maintained for longer periods of time, allowing for an average sample collection rate of about 2 g mi. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Intrinsic and induced isoproturon catabolic activity in dissimilar soils and soils under dissimilar land use.

PubMed

Reid, Brian J; Papanikolaou, Niki D; Wilcox, Ronah K

2005-02-01

The catabolic activity with respect to the systemic herbicide isoproturon was determined in soil samples by (14)C-radiorespirometry. The first experiment assessed levels of intrinsic catabolic activity in soil samples that represented three dissimilar soil series under arable cultivation. Results showed average extents of isoproturon mineralisation (after 240 h assay time) in the three soil series to be low. A second experiment assessed the impact of addition of isoproturon (0.05 microg kg(-1)) into these soils on the levels of catabolic activity following 28 days of incubation. Increased catabolic activity was observed in all three soils. A third experiment assessed levels of intrinsic catabolic activity in soil samples representing a single soil series managed under either conventional agricultural practice (including the use of isoproturon) or organic farming practice (with no use of isoproturon). Results showed higher (and more consistent) levels of isoproturon mineralisation in the soil samples collected from conventional land use. The final experiment assessed the impact of isoproturon addition on the levels of inducible catabolic activity in these soils. The results showed no significant difference in the case of the conventional farm soil samples while the induction of catabolic activity in the organic farm soil samples was significant.

On Russian concepts of Soil Memory - expansion of Dokuchaev's pedological paradigm

NASA Astrophysics Data System (ADS)

Tsatskin, A.

2012-04-01

Having developed from Dokuchaev's research on chernosem soils on loess, the Russian school of pedology traditionally focused on soils as essential component of landscape. Dokuchaev's soil-landscape paradigm (SLP) was later considerably advanced and expanded to include surface soils on other continents by Hans Jenny. In the 1970s Sokolov and Targulian in Russia introduced the new term of soil memory as an inherent ability of soils to memorize in its morphology and properties the processes of earlier stages of development. This understanding was built upon ideas of soil organizational hierarchy and different rates of specific soil processes as proposed by Yaalon. Soil memory terminology became particularly popular in Russia which is expressed in the 2008 multi-author monograph on soil memory. The Soil Memory book edited by Targulian and Goryachkin and written by 34 authors touches upon the following themes: General approaches (Section 1), Mineral carriers of soil memory (Section 2), Biological carriers of soil memory (section 3) and Anthropogenic soil memory (section 4). The book presents an original account on different new interdisciplinary projects on Russian soils and represents an important contribution into the classical Dokuchaev-Jenny SL paradigm. There is still a controversy as to in what way the Russian term soil memory is related to western terms of soil as a record or archive of earlier events and processes during the time of soil formation. Targulian and Goryachkin agree that all of the terms are close, albeit not entirely interchangeable. They insist that soil memory may have a more comprehensive meaning, e.g. applicable to such complex cases when certain soil properties whose origin is currently ambiguous cannot provide valid environmental reconstructions or dated by available dating techniques. Anyway, not terminology is the main issue. The Russian soil memory concept advances the frontiers of pedology by deepening the time-related soil functions and encouraging closer cooperation with isotope dating experts. This approach will hopefully help us all in better understanding, management and protection of the Earth's critical zone.

Soil moisture variability across different scales in an Indian watershed for satellite soil moisture product validation

NASA Astrophysics Data System (ADS)

Singh, Gurjeet; Panda, Rabindra K.; Mohanty, Binayak P.; Jana, Raghavendra B.

2016-05-01

Strategic ground-based sampling of soil moisture across multiple scales is necessary to validate remotely sensed quantities such as NASA's Soil Moisture Active Passive (SMAP) product. In the present study, in-situ soil moisture data were collected at two nested scale extents (0.5 km and 3 km) to understand the trend of soil moisture variability across these scales. This ground-based soil moisture sampling was conducted in the 500 km2 Rana watershed situated in eastern India. The study area is characterized as sub-humid, sub-tropical climate with average annual rainfall of about 1456 mm. Three 3x3 km square grids were sampled intensively once a day at 49 locations each, at a spacing of 0.5 km. These intensive sampling locations were selected on the basis of different topography, soil properties and vegetation characteristics. In addition, measurements were also made at 9 locations around each intensive sampling grid at 3 km spacing to cover a 9x9 km square grid. Intensive fine scale soil moisture sampling as well as coarser scale samplings were made using both impedance probes and gravimetric analyses in the study watershed. The ground-based soil moisture samplings were conducted during the day, concurrent with the SMAP descending overpass. Analysis of soil moisture spatial variability in terms of areal mean soil moisture and the statistics of higher-order moments, i.e., the standard deviation, and the coefficient of variation are presented. Results showed that the standard deviation and coefficient of variation of measured soil moisture decreased with extent scale by increasing mean soil moisture.

Sample sizes to control error estimates in determining soil bulk density in California forest soils

Treesearch

Youzhi Han; Jianwei Zhang; Kim G. Mattson; Weidong Zhang; Thomas A. Weber

2016-01-01

Characterizing forest soil properties with high variability is challenging, sometimes requiring large numbers of soil samples. Soil bulk density is a standard variable needed along with element concentrations to calculate nutrient pools. This study aimed to determine the optimal sample size, the number of observation (n), for predicting the soil bulk density with a...

The use of Vacutainer tubes for collection of soil samples for helium analysis

USGS Publications Warehouse

Hinkle, Margaret E.; Kilburn, James E.

1979-01-01

Measurements of the helium concentration of soil samples collected and stored in Vacutainer-brand evacuated glass tubes show that Vacutainers are reliable containers for soil collection. Within the limits of reproducibility, helium content of soils appears to be independent of variations in soil temperature, barometric pressure, and quantity of soil moisture present in the sample.

Dynamic soil properties in response to anthropogenic disturbance

NASA Astrophysics Data System (ADS)

Vanacker, Veerle; Ortega, Raúl

2013-04-01

Anthropogenic disturbance of natural vegetation can profoundly alter the physical, chemical and biological processes within soils. Rapid removal of topsoil during intense farming can result in an imbalance between soil production through chemical weathering and physical erosion, with direct implications on local biogeochemical cycling. However, the feedbacks between soil erosion, chemical weathering and biogeochemical cycling in response to anthropogenic forcing are not yet fully understood. Here, we study dynamic soil properties for a rapidly changing anthropogenic landscape, and focus on the coupling between physical erosion, soil production and soil chemical weathering. The archaeological site of Santa Maria de Melque (Toledo, Central Spain) was selected for its remarkably long occupation history dating back to the 7th century AD. As part of the agricultural complex, four retention reservoirs were built in the Early Middle Ages. The sedimentary archive was used to track the evolution in sedimentation rates and geochemical properties of the sediment. Catchment-wide soil erosion rates vary slightly between the various occupation phases (7th century-now), but are of the same magnitude as the cosmogenic nuclide-derived erosion rates. However, there exists large spatial variation in physical erosion rates that are coupled with chemical weathering intensities. The sedimentary records suggest that there are important changes in the spatial pattern of sediment source areas through time as a result of changing land use patterns

BOREAS RSS-17 Stem, Soil, and Air Temperature Data

NASA Technical Reports Server (NTRS)

Zimmerman, Reiner; McDonald, Kyle C.; Way, JoBea; Hall, Forrest G. (Editor); Nickeson, Jaime (Editor); Smith, David E. (Technical Monitor)

2000-01-01

The BOREAS RSS-17 team collected several data sets in support of its research in monitoring and analyzing environmental and phenological states using radar data. This data set consists of tree bole and soil temperature measurements from various BOREAS flux tower sites. Temperatures were measured with thermistors implanted in the hydroconductive tissue of the trunks of several trees at each site and at various depths in the soil. Data were stored on a data logger at intervals of either 1 or 2 hours. The majority of the data were acquired between early 1994 and early 1995. The primary product of this data set is the diurnal stem temperature measurements acquired for selected trees at five BOREAS tower sites. The data are provided in tabular ASCII format. The data files are available on a CD-ROM (see document number 20010000884) or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Effects of soil water saturation on sampling equilibrium and kinetics of selected polycyclic aromatic hydrocarbons.

PubMed

Kim, Pil-Gon; Roh, Ji-Yeon; Hong, Yongseok; Kwon, Jung-Hwan

2017-10-01

Passive sampling can be applied for measuring the freely dissolved concentration of hydrophobic organic chemicals (HOCs) in soil pore water. When using passive samplers under field conditions, however, there are factors that might affect passive sampling equilibrium and kinetics, such as soil water saturation. To determine the effects of soil water saturation on passive sampling, the equilibrium and kinetics of passive sampling were evaluated by observing changes in the distribution coefficient between sampler and soil (K sampler/soil ) and the uptake rate constant (k u ) at various soil water saturations. Polydimethylsiloxane (PDMS) passive samplers were deployed into artificial soils spiked with seven selected polycyclic aromatic hydrocarbons (PAHs). In dry soil (0% water saturation), both K sampler/soil and k u values were much lower than those in wet soils likely due to the contribution of adsorption of PAHs onto soil mineral surfaces and the conformational changes in soil organic matter. For high molecular weight PAHs (chrysene, benzo[a]pyrene, and dibenzo[a,h]anthracene), both K sampler/soil and k u values increased with increasing soil water saturation, whereas they decreased with increasing soil water saturation for low molecular weight PAHs (phenanthrene, anthracene, fluoranthene, and pyrene). Changes in the sorption capacity of soil organic matter with soil water content would be the main cause of the changes in passive sampling equilibrium. Henry's law constant could explain the different behaviors in uptake kinetics of the selected PAHs. The results of this study would be helpful when passive samplers are deployed under various soil water saturations. Copyright © 2017 Elsevier Ltd. All rights reserved.

Ecological Risk Assessment of Perchlorate in Avian Species, Rodents, Amphibians and Fish

DTIC Science & Technology

2007-06-01

also pose toxicological risk to terrestrial and aquatic organisms. In some instances, the occurrence of these metabolites in soils at live firing...embryo (Acheta domesticus) as an invertebrate teratology model. Fundamental and Applied Toxicology . 3:233-236. Zhang, B., P.N. Smith, and T.A...exposure on the hibernation success of the American toad (Bufu americanus). Archives of Environmental Contamination and Toxicology . 46:518- 527

VizieR Online Data Catalog: Galaxies and QSOs FIR size and surface brightness (Lutz+, 2016)

NASA Astrophysics Data System (ADS)

Lutz, D.; Berta, S.; Contursi, A.; Forster Schreiber, N. M.; Genzel, R.; Gracia-Carpio, J.; Herrera-Camus, R.; Netzer, H.; Sturm, E.; Tacconi, L. J.; Tadaki, K.; Veilleux, S.

2016-08-01

We use 70, 100, and 160um images from scan maps obtained with PACS on board Herschel, collecting archival data from various projects. In order to cover a wide range of galaxy properties, we first obtain an IR-selected local sample ranging from normal galaxies up to (ultra)luminous infrared galaxies. For that purpose, we searched the Herschel archive for all cz>=2000km/s objects from the IRAS Revised Bright Galaxy Sample (RBGS, Sanders et al., 2003, Cat. J/AJ/126/1607). (1 data file).

Global Soil Moisture from the Aquarius/SAC-D Satellite: Description and Initial Assessment

NASA Technical Reports Server (NTRS)

Bindlish, Rajat; Jackson, Thomas; Cosh, Michael; Zhao, Tianjie; O'Neil, Peggy

2015-01-01

Aquarius satellite observations over land offer a new resource for measuring soil moisture from space. Although Aquarius was designed for ocean salinity mapping, our objective in this investigation is to exploit the large amount of land observations that Aquarius acquires and extend the mission scope to include the retrieval of surface soil moisture. The soil moisture retrieval algorithm development focused on using only the radiometer data because of the extensive heritage of passive microwave retrieval of soil moisture. The single channel algorithm (SCA) was implemented using the Aquarius observations to estimate surface soil moisture. Aquarius radiometer observations from three beams (after bias/gain modification) along with the National Centers for Environmental Prediction model forecast surface temperatures were then used to retrieve soil moisture. Ancillary data inputs required for using the SCA are vegetation water content, land surface temperature, and several soil and vegetation parameters based on land cover classes. The resulting global spatial patterns of soil moisture were consistent with the precipitation climatology and with soil moisture from other satellite missions (Advanced Microwave Scanning Radiometer for the Earth Observing System and Soil Moisture Ocean Salinity). Initial assessments were performed using in situ observations from the U.S. Department of Agriculture Little Washita and Little River watershed soil moisture networks. Results showed good performance by the algorithm for these land surface conditions for the period of August 2011-June 2013 (rmse = 0.031 m(exp 3)/m(exp 3), Bias = -0.007 m(exp 3)/m(exp 3), and R = 0.855). This radiometer-only soil moisture product will serve as a baseline for continuing research on both active and combined passive-active soil moisture algorithms. The products are routinely available through the National Aeronautics and Space Administration data archive at the National Snow and Ice Data Center.

Archival analyses of eyewitness identification test outcomes: what can they tell us about eyewitness memory?

PubMed

Horry, Ruth; Halford, Paul; Brewer, Neil; Milne, Rebecca; Bull, Ray

2014-02-01

Several archival studies of eyewitness identification have been conducted, but the results have been inconsistent and contradictory. We identify some avoidable pitfalls that have been present in previous analyses and present new data that address these pitfalls. We explored associations among various estimator variables and lineup outcomes for 833 "real life" lineups, including 588 lineups in which corroborating evidence of the suspect's guilt existed. Suspect identifications were associated with exposure duration, viewing distance, and the age of the witness. Nonidentifications were associated with the number of perpetrators. We also consider some of the inherent, unavoidable limitations with archival studies and consider what such studies can really tell researchers. We conclude that differences in sampling prohibit sensible comparisons between the results of laboratory and archival studies, and that the informational value of archival studies is actually rather limited.

Monitoring temporal and spatial trends of legacy and emerging contaminants in marine environment: results from the environmental specimen bank (es-BANK) of Ehime University, Japan.

PubMed

Tanabe, Shinsuke; Ramu, Karri

2012-07-01

The Environmental Specimen Bank (es-BANK) for Global Monitoring at the Center for Marine Environmental Studies, Ehime University, Japan has more than four decades of practical experience in specimen banking. Over the years, es-BANK has archived specimens representing a wide range of environmental matrices, i.e. fishes, reptiles, birds, aquatic mammals, terrestrial mammals, human, soils, and sediments. The samples have been collected as part of the various monitoring programs conducted worldwide. The current review is a summary of selected studies conducted at the Center for Marine Environmental Studies, on temporal and spatial trends of legacy and emerging contaminants in the marine environment. One of the major conclusions drawn from the studies is that environmental problems are no more regional issues and, thus, environmental specimen banking should not be limited to national boundaries, but should have a global outlook. Copyright © 2012 Elsevier Ltd. All rights reserved.

Evaluation of Porcelain Cup Soil Water Samplers for Bacteriological Sampling1

PubMed Central

Dazzo, Frank B.; Rothwell, Donald F.

1974-01-01

The validity of obtaining soil water for fecal coliform analyses by porcelain cup soil water samplers was examined. Numbers from samples of manure slurry drawn through porcelain cups were reduced 100- to 10,000,000-fold compared to numbers obtained from the external manure slurry, and 65% of the cups yielded coliform-free samples. Fecal coliforms adsorbed to cups apparently were released, thus influencing the counts of subsequent samples. Fecal coliforms persisted in soil water samplers buried in soil and thus could significantly influence the coliform counts of water samples obtained a month later. These studies indicate that porcelain cup soil water samplers do not yield valid water samples for fecal coliform analyses. Images PMID:16349998

MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive.

PubMed

Bernstein, Matthew N; Doan, AnHai; Dewey, Colin N

2017-09-15

The NCBI's Sequence Read Archive (SRA) promises great biological insight if one could analyze the data in the aggregate; however, the data remain largely underutilized, in part, due to the poor structure of the metadata associated with each sample. The rules governing submissions to the SRA do not dictate a standardized set of terms that should be used to describe the biological samples from which the sequencing data are derived. As a result, the metadata include many synonyms, spelling variants and references to outside sources of information. Furthermore, manual annotation of the data remains intractable due to the large number of samples in the archive. For these reasons, it has been difficult to perform large-scale analyses that study the relationships between biomolecular processes and phenotype across diverse diseases, tissues and cell types present in the SRA. We present MetaSRA, a database of normalized SRA human sample-specific metadata following a schema inspired by the metadata organization of the ENCODE project. This schema involves mapping samples to terms in biomedical ontologies, labeling each sample with a sample-type category, and extracting real-valued properties. We automated these tasks via a novel computational pipeline. The MetaSRA is available at metasra.biostat.wisc.edu via both a searchable web interface and bulk downloads. Software implementing our computational pipeline is available at http://github.com/deweylab/metasra-pipeline. cdewey@biostat.wisc.edu. Supplementary data are available at Bioinformatics online. © The Author(s) 2017. Published by Oxford University Press.

Viscoelastic Properties of Soil with Different Ammonium Nitrate Addition

NASA Astrophysics Data System (ADS)

Kawecka-Radomska, M.; Tomczyńska-Mleko, M.; Muszyńskic, S.; Wesołowska-Trojanowska, M.; Mleko, S.

2017-12-01

Four different soils samples were taken from not cultivated recreational places. Particle-size distribution and pH (in water and in 1 M KCl) of the soil samples were measured. Soil samples were saturated with deionized water and solution of ammonium nitrate with the concentration of 5, 50 or 500 mM for 3 days. The samples were analyzed using dynamic oscillatory rheometer by frequency and strain sweeps. Soil samples were similar to physical gels, as they presented rheological properties between those of a concentrated biopolymer and a true gel. 50 mM concentration of the salt was enough to make changes in the elasticity of the soils. Small concentration of the fertilizer caused weakening of the soil samples structure. Higher concentration of ammonium nitrate caused the increase in the moduli crossover strain value. For the loam sample taken from a playground, with the highest content of the particles <0.002 mm (clay aluminosilicates), the lowest value of strain was observed at the moduli intersection. Lower strain value was necessary for the sliding shear effect of soil A sample effecting transgression to the "flowing" state. Strain sweep moduli crossover point can be used as a determinant of the rheological properties of soil.

Not the time or the place: the missing spatio-temporal link in publicly available genetic data.

PubMed

Pope, Lisa C; Liggins, Libby; Keyse, Jude; Carvalho, Silvia B; Riginos, Cynthia

2015-08-01

Genetic data are being generated at unprecedented rates. Policies of many journals, institutions and funding bodies aim to ensure that these data are publicly archived so that published results are reproducible. Additionally, publicly archived data can be 'repurposed' to address new questions in the future. In 2011, along with other leading journals in ecology and evolution, Molecular Ecology implemented mandatory public data archiving (the Joint Data Archiving Policy). To evaluate the effect of this policy, we assessed the genetic, spatial and temporal data archived for 419 data sets from 289 articles in Molecular Ecology from 2009 to 2013. We then determined whether archived data could be used to reproduce analyses as presented in the manuscript. We found that the journal's mandatory archiving policy has had a substantial positive impact, increasing genetic data archiving from 49 (pre-2011) to 98% (2011-present). However, 31% of publicly archived genetic data sets could not be recreated based on information supplied in either the manuscript or public archives, with incomplete data or inconsistent codes linking genetic data and metadata as the primary reasons. While the majority of articles did provide some geographic information, 40% did not provide this information as geographic coordinates. Furthermore, a large proportion of articles did not contain any information regarding date of sampling (40%). Although the inclusion of spatio-temporal data does require an increase in effort, we argue that the enduring value of publicly accessible genetic data to the molecular ecology field is greatly compromised when such metadata are not archived alongside genetic data. © 2015 John Wiley & Sons Ltd.

Trends of brominated diphenyl ethers in fresh and archived Great Lakes fish (1979-2005)

USGS Publications Warehouse

Batterman, Stuart; Chernyak, Sergei; Gwynn, Erica; Cantonwine, David; Jia, Chunrong; Begnoche, Linda J.; Hickey, James P.

2007-01-01

While few environmental measurements of brominated diphenyl ethers (BDEs) were completed prior to the mid-1990s, analysis of appropriately archived samples might enable the determination of contaminant trends back to the introduction of these chemicals. In this paper, we first investigate the stability of BDEs in archived frozen and extracted fish samples, and then characterize trends of these chemicals in rainbow smelt (Osmerus mordax) and lake trout (Salvelinus namaycush) in each of the Great Lakes between 1979 and 2005. We focus on the four most common congeners (BDE-47, 100, 99 and 153) and use a change-point analysis to detect shifts in trends. Analyses of archived fish samples yielded precise BDE concentration measurements with only small losses (0.8% per year in frozen fish tissues, 2.2% per year in refrigerated extracts). Trends in fish from all Great Lakes showed large increases in BDE concentrations that started in the early to mid-1980s with fairly consistent doubling times (generally 2–4 years except in Lake Erie smelt where levels increased very slowly), though concentrations and trends show differences by congener, fish species and lake. The most recent data show that accumulation rates are slowing, and concentrations of penta- and hexa-congeners in trout from Lakes Ontario and Michigan and smelt from Lake Ontario started to decrease in the mid-1990s. Trends in smelt and trout are evolving somewhat differently, and trout concentrations in the five lakes are now ranked as Michigan > Superior = Ontario > Huron = Erie, and smelt concentrations as Michigan > Ontario > Huron > Superior > Erie. The analysis of properly archived samples permits the reconstruction of historical trends, congener distributions, biomagnification and other information that can aid the understanding and management of these contaminants.

University Counseling Center Clients' Expressed Preferences for Counselors: A Four Year Archival Exploration

ERIC Educational Resources Information Center

Speight, Suzette L.; Vera, Elizabeth M.

2005-01-01

This archival study explored patterns of client preferences from a randomized sample of 881 clients at a Midwestern university counseling center. Information from client intake forms was collected for a four year time frame. Results showed that 61% of the clients did not express preferences for particular types of counselors when asked on intake…

Selected Guidelines for the Management of Records and Archives: A RAMP Reader.

ERIC Educational Resources Information Center

Walne, Peter, Comp.

The guidelines contained in this book are taken from studies published by UNESCO's Records and Archives Management Program (RAMP) between 1981 and 1987. Each set of guidelines is accompanied by an introduction to provide chronological or methodological context. The guidelines are titled as follows: (1) "The Use of Sampling Techniques in the…

DATA QUALITY OBJECTIVES FOR SELECTING WASTE SAMPLES FOR THE BENCH STEAM REFORMER TEST

DOE Office of Scientific and Technical Information (OSTI.GOV)

BANNING DL

2010-08-03

This document describes the data quality objectives to select archived samples located at the 222-S Laboratory for Fluid Bed Steam Reformer testing. The type, quantity and quality of the data required to select the samples for Fluid Bed Steam Reformer testing are discussed. In order to maximize the efficiency and minimize the time to treat Hanford tank waste in the Waste Treatment and Immobilization Plant, additional treatment processes may be required. One of the potential treatment processes is the fluid bed steam reformer (FBSR). A determination of the adequacy of the FBSR process to treat Hanford tank waste is required.more » The initial step in determining the adequacy of the FBSR process is to select archived waste samples from the 222-S Laboratory that will be used to test the FBSR process. Analyses of the selected samples will be required to confirm the samples meet the testing criteria.« less

Automated soil gas monitoring chamber

DOEpatents

Edwards, Nelson T.; Riggs, Jeffery S.

2003-07-29

A chamber for trapping soil gases as they evolve from the soil without disturbance to the soil and to the natural microclimate within the chamber has been invented. The chamber opens between measurements and therefore does not alter the metabolic processes that influence soil gas efflux rates. A multiple chamber system provides for repetitive multi-point sampling, undisturbed metabolic soil processes between sampling, and an essentially airtight sampling chamber operating at ambient pressure.

Occurrence and abundance of 6-methyl branched glycerol dialkyl glycerol tetraethers in soils: Implications for palaeoclimate reconstruction

NASA Astrophysics Data System (ADS)

De Jonge, Cindy; Hopmans, Ellen C.; Zell, Claudia I.; Kim, Jung-Hyun; Schouten, Stefan; Sinninghe Damsté, Jaap S.

2014-09-01

The distribution of branched glycerol dialkyl glycerol tetraethers (brGDGTs) in soils has been shown to correlate with the soil pH and the mean annual air temperature (MAT). This has been used to perform palaeoclimate reconstructions based on brGDGTs recovered from palaeosoils, freshwater, and marine sedimentary archives. Recently described 6-methyl brGDGTs were shown to co-elute with the 5-methyl brGDGTs that are used to calculate the CBT and MBT‧ indices used as palaeoclimate proxies. The impact of these 6-methyl brGDGTs on the established palaeoclimate proxies is unknown and will depend on their abundance in soils. Using improved chromatography, we quantified the fractional abundance of 6-methyl brGDGTs in globally distributed soils and show that they are abundant components, comprising on average 24% of the total amount of brGDGTs. All penta- and hexa-methylated brGDGTs (i.e. with zero to two cyclopentane moieties) were shown to comprise both 5- and 6-methyl isomers. The fractional abundances of the six 6-methyl brGDGTs correlate positively with each other, suggesting a common biological source in most soils, and correlate strongly with soil pH. The presence of the 6-methyl brGDGTs introduced scatter in the original MBT‧/CBT-MAT calibration and caused a dependence on soil pH of the MBT‧. Exclusion of the 6-methyl brGDGTs from the MBT‧, i.e. the newly defined MBT‧5ME, shows that it is no longer related to soil pH. The correlation with MAT is improved, reducing the residual mean error (RMSE) from 6.2 to 4.8 °C. Also, the correlation of the CBT after the exclusion of the 6-methyl brGDGTs (defined as CBT5ME) with soil pH slightly improved. Furthermore, the separate quantification of the 6-methyl brGDGTs allows the definition of new indices. The CBT‧, which comprises the 6-methyl brGDGTs, is a substantially improved alternative to the CBT5ME, reducing the RMSE from 0.8 to 0.5 pH units. Also, the accuracy of MAT reconstructions can be improved using a multiple linear regression, the MATmr, decreasing the RMSE further to 4.6 °C. Furthermore, we introduce an index that allows the reconstruction of MAT in sites where only the ubiquitous brGDGT Ia, IIa and IIIa are present, the MATmrs. Our results imply that separate quantification of the 6- and 5-methyl brGDGT is essential for accurately quantifying brGDGTs in environmental samples and results in substantially improved MAT and soil pH reconstructions.

Development of internal forest soil reference samples and testing of digestion methods

Treesearch

J.E. Hislop; J.W. Hornbeck; S.W. Bailey; R.A. Hallett

1998-01-01

Our research requires determinations of total elemental concentrations of forest soils. The lack of certified forest soil reference materials led us to develop internal reference samples. Samples were collected from three soil horizons (Oa, B, and C) at three locations having forested, acidic soils similar to those we commonly analyze. A shatterbox was used to...

The AMBRE project: Parameterisation of FGK-type stars from the ESO:HARPS archived spectra

NASA Astrophysics Data System (ADS)

De Pascale, M.; Worley, C. C.; de Laverny, P.; Recio-Blanco, A.; Hill, V.; Bijaoui, A.

2014-10-01

Context. The AMBRE project is a collaboration between the European Southern Observatory (ESO) and the Observatoire de la Côte d'Azur (OCA). It has been established to determine the stellar atmospheric parameters of the archived spectra of four ESO spectrographs. Aims: The analysis of the ESO:HARPS archived spectra for the determination of their atmospheric parameters (effective temperature, surface gravity, global metallicities, and abundance of α-elements over iron) is presented. The sample being analysed (AMBRE:HARPS) covers the period from 2003 to 2010 and is comprised of 126 688 scientific spectra corresponding to ~17 218 different stars. Methods: For the analysis of the AMBRE:HARPS spectral sample, the automated pipeline developed for the analysis of the AMBRE:FEROS archived spectra has been adapted to the characteristics of the HARPS spectra. Within the pipeline, the stellar parameters are determined by the MATISSE algorithm, which has been developed at OCA for the analysis of large samples of stellar spectra in the framework of galactic archaeology. In the present application, MATISSE uses the AMBRE grid of synthetic spectra, which covers FGKM-type stars for a range of gravities and metallicities. Results: We first determined the radial velocity and its associated error for the ~15% of the AMBRE:HARPS spectra, for which this velocity had not been derived by the ESO:HARPS reduction pipeline. The stellar atmospheric parameters and the associated chemical index [α/Fe] with their associated errors have then been estimated for all the spectra of the AMBRE:HARPS archived sample. Based on key quality criteria, we accepted and delivered the parameterisation of 93 116 (74% of the total sample) spectra to ESO. These spectra correspond to ~10 706 stars; each are observed between one and several hundred times. This automatic parameterisation of the AMBRE:HARPS spectra shows that the large majority of these stars are cool main-sequence dwarfs with metallicities greater than -0.5 dex (as expected, given that HARPS has been extensively used for planet searches around GK-stars).

76 FR 11334 - Safety Zone; Soil Sampling; Chicago River, Chicago, IL

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-02

...-AA00 Safety Zone; Soil Sampling; Chicago River, Chicago, IL AGENCY: Coast Guard, DHS. ACTION: Temporary... North Branch of the Chicago River due to soil sampling in this area. This temporary safety zone is... soil sampling efforts. DATES: This rule is effective from 7 a.m. on March 1, 2011, until 5 p.m. on...

Building a Testate Amoebae-Based Transfer Function in Mountain Fens for Paleohydrological Reconstruction Expansion

NASA Astrophysics Data System (ADS)

Lemos, A. L.; Von Ness, K.; Loisel, J.; Karran, D. J.

2017-12-01

Minerotrophic peatlands are widespread ecosystems that could be used more often as paleoecological and paleoclimatic archives. However, they have received much less attention than ombrotrophic peat bogs, resulting in very limited information pertaining to their microbial communities. In spite of this, a few studies from Europe have suggested that testate amoebae assemblages from fens could be used as proxies for soil moisture. Here we contribute to this effort by providing a new study from a mountain fen (beaver meadow) located in the Sibbald Research Wetlands in the Rocky Mountains of Kananaskis Provincial Park, Alberta, Canada. Our goals are to (1) quantify the relationships between testate amoebae communities, environmental parameters (pH, water table depth, soil moisture, conductivity, trace elements), and vegetation, (2) identify the key controls on testate amoebae distribution, and (3) develop a transfer function to be used in mountain fens of the region and potentially beyond, given the cosmopolitan nature of testate amoebae taxa. Fifty surface samples were extracted along a wide hydrological gradient in the beaver meadow during Summer 2017, including a current beaver meadow, an abandoned beaver meadow, and a site without apparent beaver activity. These sites were chosen with the hypothesis that distinct testate assemblages might colonize these different types of sites, which would be useful to reconstruct beaver activity downcore. The surface samples from these sites will be the main focus for the new transfer function and provide additional information about climate reconstruction from minerotrophic peatlands such as the mountain fen being studied here. Overall, the building of a testate amoebae-based transfer function in mountain fens is needed in order to expand and improve the use of paleohydrological reconstruction in locations of higher latitude, which are still sparse.

How soil organic matter composition controls hexachlorobenzene-soil-interactions: adsorption isotherms and quantum chemical modeling.

PubMed

Ahmed, Ashour A; Kühn, Oliver; Aziz, Saadullah G; Hilal, Rifaat H; Leinweber, Peter

2014-04-01

Hazardous persistent organic pollutants (POPs) interact in soil with the soil organic matter (SOM) but this interaction is insufficiently understood at the molecular level. We investigated the adsorption of hexachlorobenzene (HCB) on soil samples with systematically modified SOM. These samples included the original soil, the soil modified by adding a hot water extract (HWE) fraction (soil+3 HWE and soil+6 HWE), and the pyrolyzed soil. The SOM contents increased in the order pyrolyzed soil

Linear and non-linear responses of vegetation and soils to glacial-interglacial climate change in a Mediterranean refuge.

PubMed

Holtvoeth, Jens; Vogel, Hendrik; Valsecchi, Verushka; Lindhorst, Katja; Schouten, Stefan; Wagner, Bernd; Wolff, George A

2017-08-14

The impact of past global climate change on local terrestrial ecosystems and their vegetation and soil organic matter (OM) pools is often non-linear and poorly constrained. To address this, we investigated the response of a temperate habitat influenced by global climate change in a key glacial refuge, Lake Ohrid (Albania, Macedonia). We applied independent geochemical and palynological proxies to a sedimentary archive from the lake over the penultimate glacial-interglacial transition (MIS 6-5) and the following interglacial (MIS 5e-c), targeting lake surface temperature as an indicator of regional climatic development and the supply of pollen and biomarkers from the vegetation and soil OM pools to determine local habitat response. Climate fluctuations strongly influenced the ecosystem, however, lake level controls the extent of terrace surfaces between the shoreline and mountain slopes and hence local vegetation, soil development and OM export to the lake sediments. There were two phases of transgressional soil erosion from terrace surfaces during lake-level rise in the MIS 6-5 transition that led to habitat loss for the locally dominant pine vegetation as the terraces drowned. Our observations confirm that catchment morphology plays a key role in providing refuges with low groundwater depth and stable soils during variable climate.

Combination of a Fast Cleanup Procedure and a DR-CALUX® Bioassay for Dioxin Surveillance in Taiwanese Soils

PubMed Central

Lin, Ding-Yan; Lee, Yi-Pin; Li, Chiu-Ping; Chi, Kai-Hsien; Liang, Bo-Wei P.; Liu, Wen-Yao; Wang, Chih-Cheng; Lin, Susana; Chen, Ting-Chien; Yeh, Kuei-Jyum C.; Hsu, Ping-Chi; Hsu, Yi-Chyun; Chao, How-Ran; Tsou, Tsui-Chun

2014-01-01

Our goal was to determine dioxin levels in 800 soil samples collected from Taiwan. An in vitro DR-CALUX® assay was carried out with the help of an automated Soxhlet system and fast cleanup column. The mean dioxin level of 800 soil samples was 36.0 pg-bioanalytical equivalents (BEQs)/g dry weight (d.w.). Soil dioxin-BEQs were higher in northern Taiwan (61.8 pg-BEQ/g d.w.) than in central, southern, and eastern Taiwan (22.2, 24.9, and 7.80 pg-BEQ/g d.w., respectively). Analysis of multiple linear regression models identified four major predictors of dioxin-BEQs including soil sampling location (β = 0.097, p < 0.001), land use (β = 0.065, p < 0.001), soil brightness (β = 0.170, p < 0.001), and soil moisture (β = 0.051, p = 0.020), with adjusted R2 = 0.947 (p < 0.001) (n = 662). An univariate logistic regression analysis with the cut-off point of 33.4 pg-BEQ/g d.w. showed significant odds ratios (ORs) for soil sampling location (OR = 2.43, p < 0.001), land use (OR = 1.47, p < 0.001), and soil brightness (OR = 2.83, p = 0.009). In conclusion, four variables, including soil sampling location, land use, soil brightness, and soil moisture, may be related to soil-dioxin contamination. Soil samples collected in northern Taiwan, and especially in Bade City, soils near industrial areas, and soils with darker color may contain higher dioxin-BEQ levels. PMID:24806195

Detection of Toxoplasma gondii oocysts in soils in northwestern China using a new semi-nested PCR assay.

PubMed

Wang, Meng; Meng, Peng; Ye, Qiang; Pu, Yuan-Hua; Yang, Xiao-Yu; Luo, Jian-Xun; Zhang, Nian-Zhang; Zhang, De-Lin

2014-09-28

Toxoplasma gondii is a zoonotic pathogen that can infect a range of animals and humans. Ingestion of T. gondii oocysts in soil is a significant transmission route for humans and animals acquiring toxoplasmosis. In the present study, we developed a new semi-nested PCR method to determine T. gondii oocysts distribution in soils in northwestern China. The one tube semi-nested PCR assay was developed to detect the oocysts of T. gondii in soil, targeting the repetitive 529 bp fragment of T. gondii genomic DNA. Then a total of 268 soil samples, including 148 samples from Gansu Province and 120 samples from Qinghai Province, northwestern China, were examined by the semi-nested PCR method. One third of the positive samples were sequenced. The sensitivity of the semi-nested PCR assay was 10(2)  T. gondii oocysts in 5 g soil sample. Investigation of soil samples from northwestern China showed that 34 out of 268 soil samples (12.69%) were T. gondii positive. Sequences of the partial 529 bp fragments varied from 0-1.2% among the sequenced samples. The prevalence of T. gondii oocysts in soil from cities (24/163) was slightly higher than that in soils from pasturing areas (10/105) (P = 0.21). Among the different regions in cities, the prevalence of T. gondii oocysts in soils from parks was 14.15%, whereas that in soils from schools was 19.05%. The present study firstly reported the prevalence of T. gondii oocysts in soils in northwest China using a novel semi-nested PCR assay, which provided baseline data for the effective prevention and control of toxoplasmosis in this region.

Changes in the enzymatic activity of soil samples upon their storage

NASA Astrophysics Data System (ADS)

Dadenko, E. V.; Kazeev, K. Sh.; Kolesnikov, S. I.; Val'Kov, V. F.

2009-12-01

The influence of the duration and conditions of storage of soil samples on the activity of soil enzymes (catalase, β-fructofuranosidase, and dehydrogenase) was studied for the main soils of southern Russia (different subtypes of chernozems, chestnut soils, brown forest soils, gray forest soils, solonetzes, and solonchaks). The following soil storage conditions were tested: (1) the air-dry state at room temperature, (2) the airdry state at a low positive (in a refrigerator, +4°C) temperature, (3) naturally moist samples at a low positive temperature, and (4) naturally moist samples at a negative (in a freezer, -5°C) temperature. It was found that the sample storing caused significant changes in the enzymatic activities, which depended on the soil type, the land use, the type of enzyme, and the duration and conditions of the sample storage. In the course of the storage, the changes in the enzymatic activity had a nonlinear character. The maximum changes were observed in the initial period (up to 12 weeks). Then, a very gradual decrease in the activity of the studied enzymes was observed. Upon the long-term (>12 weeks) storage under the different conditions, the difference in the activities of the soil enzymes became less pronounced. The storage of soil samples in the air-dried state at room temperature can be recommended for mass investigations.

Avicennia germinans (black mangrove) vessel architecture is linked to chilling and salinity tolerance in the Gulf of Mexico

PubMed Central

Madrid, Eric N.; Armitage, Anna R.; López-Portillo, Jorge

2014-01-01

Over the last several decades, the distribution of the black mangrove Avicennia germinans in the Gulf of Mexico has expanded, in part because it can survive the occasional freeze events and high soil salinities characteristic of the area. Vessel architecture may influence mangrove chilling and salinity tolerance. We surveyed populations of A. germinans throughout the Gulf to determine if vessel architecture was linked to field environmental conditions. We measured vessel density, hydraulically weighted vessel diameter, potential conductance capacity, and maximum tensile fracture stress. At each sampling site we recorded mangrove canopy height and soil salinity, and determined average minimum winter temperature from archived weather records. At a subset of sites, we measured carbon fixation rates using a LI-COR 6400XT Portable Photosynthesis System. Populations of A. germinans from cooler areas (Texas and Louisiana) had narrower vessels, likely reducing the risk of freeze-induced embolisms but also decreasing water conductance capacity. Vessels were also narrower in regions with high soil salinity, including Texas, USA and tidal flats in Veracruz, Mexico. Vessel density did not consistently vary with temperature or soil salinity. In abiotically stressful areas, A. germinans had a safe hydraulic architecture with narrower vessels that may increase local survival. This safe architecture appears to come at a substantial physiological cost in terms of reduction in conductance capacity and carbon fixation potential, likely contributing to lower canopy heights. The current distribution of A. germinans in the Gulf is influenced by the complex interplay between temperature, salinity, and vessel architecture. Given the plasticity of A. germinans vessel characters, it is likely that this mangrove species will be able to adapt to a wide range of potential future environmental conditions, and continue its expansion in the Gulf of Mexico in response to near-term climate change. PMID:25309570

Avicennia germinans (black mangrove) vessel architecture is linked to chilling and salinity tolerance in the Gulf of Mexico.

PubMed

Madrid, Eric N; Armitage, Anna R; López-Portillo, Jorge

2014-01-01

Over the last several decades, the distribution of the black mangrove Avicennia germinans in the Gulf of Mexico has expanded, in part because it can survive the occasional freeze events and high soil salinities characteristic of the area. Vessel architecture may influence mangrove chilling and salinity tolerance. We surveyed populations of A. germinans throughout the Gulf to determine if vessel architecture was linked to field environmental conditions. We measured vessel density, hydraulically weighted vessel diameter, potential conductance capacity, and maximum tensile fracture stress. At each sampling site we recorded mangrove canopy height and soil salinity, and determined average minimum winter temperature from archived weather records. At a subset of sites, we measured carbon fixation rates using a LI-COR 6400XT Portable Photosynthesis System. Populations of A. germinans from cooler areas (Texas and Louisiana) had narrower vessels, likely reducing the risk of freeze-induced embolisms but also decreasing water conductance capacity. Vessels were also narrower in regions with high soil salinity, including Texas, USA and tidal flats in Veracruz, Mexico. Vessel density did not consistently vary with temperature or soil salinity. In abiotically stressful areas, A. germinans had a safe hydraulic architecture with narrower vessels that may increase local survival. This safe architecture appears to come at a substantial physiological cost in terms of reduction in conductance capacity and carbon fixation potential, likely contributing to lower canopy heights. The current distribution of A. germinans in the Gulf is influenced by the complex interplay between temperature, salinity, and vessel architecture. Given the plasticity of A. germinans vessel characters, it is likely that this mangrove species will be able to adapt to a wide range of potential future environmental conditions, and continue its expansion in the Gulf of Mexico in response to near-term climate change.

Using soil test results to determine fertilizer applications

Treesearch

C. B. Davey

2002-01-01

Using soil test results is a very useful practice IF the sample(s) of soil are good representations of the nursery soil. The lab results can be no more accurate than the samples submitted, and IF you know the texture of the nursery soil, and IF you know which soil extractant was used by the lab, and IF you know what crop is to be grown, and IF, for trees, which species...

Organochlorine insecticide residues in soil and earthworms in the Delhi area, India, August-October 1974

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yadav, D.V.; Mittal, P.K.; Agarwal, H.C.

1981-09-01

DDT residues in soil and earthworms from 50 sites in Delhi were monitored. DDT was detected in all but two samples each of soil and earthworms. Among DDT residues, p,p'-DDE was most common and was found in 48 samples each of soil and earthworms; p,p'-DDT was detected in only 43 soil samples and 46 earthworm samples. p,p'-TDE and o,p'-DDT were also present in smaller concentrations in 29 and 15 soil samples and in 43 and 25 earthworm samples, respectively. Maximum total DDT concentration of 2.6 ppm was detected in the soil from Durga Nagar in the vicinity of a DDTmore » factory. The highest concentration of 37.7 ppm total DDT in earthworms was also obtained from the same site. The maximum concentration factor found in the earthworms was 551. The total DDT concentration in the earthworms and soil showed significant correlation.« less

Major and trace element geochemistry and background concentrations for soils in Connecticut

USGS Publications Warehouse

Brown, Craig; Thomas, Margaret A.

2014-01-01

Soil samples were collected throughout Connecticut (CT) to determine the relationship of soil chemistry with the underlying geology and to better understand background concentrations of major and trace elements in soils. Soil samples were collected (1) from the upper 5 cm of surficial soil at 100 sites, (2) from the A horizon at 86 of these sites, and (3) from the deeper horizon, typically the C horizon, at 79 of these sites. The <2-millimeter fraction of each sample was analyzed for 44 elements by methods that yield the total or near-total elemental content. Sample sites were characterized by glacial setting, underlying bedrock geology, and soil type. These spatial data were used with element concentrations in the C-horizon to relate geologic factors to soil chemistry. Concentrations of elements in C-horizon soils varied with grain size in surficial glacial materials and with underlying rock types, as determined using nonparametric statistical procedures. Concentrations of most elements in C-horizon soils showed a positive correlation with silt and (or) clay content and were higher in surficial materials mapped as till, thick till, and (or) fines. Element concentrations in C-horizon soils showed significant differences among the underlying geologic provinces and were highest overlying the Grenville Belt and (or) the Grenville Shelf Sequence Provinces in western CT. These rocks consist mainly of carbonates and the relatively high element concentrations in overlying soils likely result from less influence of dilution by quartz compared to other provinces. Element concentrations in C-horizon soils in CT were compared with those in samples from other New England states overlying similar lithologic bedrock types. The upper range of As concentrations in C-horizon soils overlying the New Hampshire-Maine (NH-ME) Sequence in CT was 15 mg/kg, lower than the upper range of 24 mg/kg in C-horizon soils overlying the same sequence in ME. In CT, U concentration means were significantly higher in C-horizon soils overlying Avalonian granites, and U concentrations ranged as high as 14 mg/kg, compared to those in C-horizon soil samples collected from other New England states, which ranged as high as 6.1 mg/kg in a sample in NH overlying the NH-ME Sequence. Element concentrations in C-horizon soils in CT were compared with those in samples collected from shallower depths. Concentrations of most major elements were highest in C-horizon soil samples, including Al, Ca, Fe, K, Na, and Ti, but element concentrations showed a relatively similar pattern in A-horizon and surficial soil samples among the underlying geologic provinces. Trace element concentrations, including Ba, W, Ga, Ni, Cs, Rb, Sr, Th, Sc, and U, also were higher in C-horizon soil samples than in overlying soil samples. Concentrations of Mg, and several trace elements, including Mn, P, As, Nb, Sn, Be, Bi, Hg, Se, Sb, La, Co, Cr, Pb, V, Y, Cu, Pb, and Zn were highest in some A-horizon or surficial soils, and indicate possible contributions from anthropogenic sources. Because element concentrations in soils above the C horizon are more likely to be affected by anthropogenic factors, concentration ranges in C-horizon soils and their spatially varying geologic associations should be considered when estimating background concentrations of elements in CT soils.

A soil sampling intercomparison exercise for the ALMERA network.

PubMed

Belli, Maria; de Zorzi, Paolo; Sansone, Umberto; Shakhashiro, Abduhlghani; Gondin da Fonseca, Adelaide; Trinkl, Alexander; Benesch, Thomas

2009-11-01

Soil sampling and analysis for radionuclides after an accidental or routine release is a key factor for the dose calculation to members of the public, and for the establishment of possible countermeasures. The IAEA organized for selected laboratories of the ALMERA (Analytical Laboratories for the Measurement of Environmental Radioactivity) network a Soil Sampling Intercomparison Exercise (IAEA/SIE/01) with the objective of comparing soil sampling procedures used by different laboratories. The ALMERA network is a world-wide network of analytical laboratories located in IAEA member states capable of providing reliable and timely analysis of environmental samples in the event of an accidental or intentional release of radioactivity. Ten ALMERA laboratories were selected to participate in the sampling exercise. The soil sampling intercomparison exercise took place in November 2005 in an agricultural area qualified as a "reference site", aimed at assessing the uncertainties associated with soil sampling in agricultural, semi-natural, urban and contaminated environments and suitable for performing sampling intercomparison. In this paper, the laboratories sampling performance were evaluated.

Work plan for focused feasibility study of the toxic burning pits area at J-Field, Aberdeen Proving Ground, Maryland

DOE Office of Scientific and Technical Information (OSTI.GOV)

Biang, C.; Benioff, P.; Martino, L.

1995-03-01

The Environmental Management Division (EMD) of Aberdeen Proving Ground (APG), Maryland, is conducting a remedial investigation and feasibility study (RI/FS) of the J-Field area at APG pursuant to the Comprehensive Environmental Response, Compensation, and Liability Act, as amended (CERCIA). J-Field is within the Edgewood Area of APG in Harford County, Maryland. Since World War II, activities in the Edgewood Area have included the development, manufacture, testing, and destruction of chemical agents and munitions. These materials were destroyed at J-Field by open burning and open detonation (OB/OD). Considerable archival information about J-Field exists as a result of efforts by APG staffmore » to characterize the hazards associated with the site. Contamination of J-Field was first detected during an environmental survey of the Edgewood Area conducted in 1977 and 1978 by the US Army Toxic and Hazardous Materials Agency (USATHAMA)(predecessor to the US Army Environmental Center). As part of a subsequent USATHAMA environmental survey, 11 wells were installed and sampled at J-Field. Contamination at J-Field was also detected during a munitions disposal survey conducted by Princeton Aqua Science in 1983. The Princeton Aqua Science investigation involved the installation and sampling of nine wells and the collection and analysis of surficial and deep composite soil samples. In 1986, a Resource Conservation and Recovery Act (RCRA) permit (MD3-21-0021355) requiring a basewide RCRA Facility Assessment (RFA) and a hydrogeologic assessment of J-Field was issued by the US Environmental Protection Agency (EPA). In 1987, the US Geological Survey (USGS) began a two-phased hydrogeologic assessment in which data were collected to model groundwater flow at J-Field. Soil gas investigations were conducted, several well clusters were installed, a groundwater flow model was developed, and groundwater and surface water monitoring programs were established that continue today-« less

Exploring the use of weathering indexes in an alluvial fan chronology

NASA Astrophysics Data System (ADS)

Hardenbicker, Ulrike; Watanabe, Makiko; Kotowich, Roberta

2015-04-01

Alluvial fan sediments can act as an archive of local environmental history. Two borehole cores (FN 350 cm and AG 850cm) from Holocene alluvial fans located in the Qu'Appelle Valley in southern Saskatchewan were analyzed in order to identify how changes in land use of upland catchment plateaus modified the pattern and rate of sediment delivery to the fan. Due to the lack of material for radiometric dating a chronology of depositional events within the alluvial fans was established by using lithostratigraphy data of soils and sediments. In order to establish a more detailed relative chronology we evaluated if weathering indexes (the Parker Index, the CaO/ZrO2 molar ratio, the Product Index) originally developed for studies of in situ weathering of bedrock, are suitable to assess sediment weathering within alluvial fan sediments. To quantify the degree of weathering within the sediment samples the three indexes of weathering were calculated using the proportions of elements measure by Energy Dispersive X-ray Spectroscopy and there is an inverse relationship between weathering index and sample age. For further statistical analyses the fan sediments were classified into three groups: a sheet flow facies of well sorted silt loam and sandy loam textures, bed load facies characterized by high sand and gravel content and layers with high organic matter in combination with higher clay content indicative of in situ weathering and soil development. First results show that the Product Index may be the most suitable weathering index to indicate weathering or input of less weathered sediment within the sheet flow and bed load facies. In general, the weathering indexes do not take into account complexities of the weathering processes nor the overall environmental conditions in an alluvial fan. But chemical weathering indexes accompanied by geophysical and geo-chemical information have value, especially when the amount of sample material is limited.

Malignant Tumors and Forensics – Dilemmas and Proposals

PubMed Central

Budimlija, Zoran; Lu, Connie; Axler-DiPerte, Grace; Seifarth, Jessica; Popiolek, Dorota; Fogt, Franz; Prinz, Mechthild

2009-01-01

Aim To evaluate the effect of genetic instability and degradation in archived histology samples from cancerous tumors and to investigate the validity of short tandem repeat (STR) typing of these samples and its potential effect on human identification. Methods Two hundred and twenty eight slides of archival pathology tissues from 13 different types of malignant tumors were compared with healthy tissues from the same individuals. DNA analysis was performed using standard techniques for forensic STR analysis, PowerPlex®16 and Identifiler® on 2 distinct sample sets. Genetic instability was assessed by comparing reference tissues with cancerous tissues derived from the same individual. Loss of heterozygosity, a ≥50% reduction in heterozygosity ratio between healthy and diseased samples, and microsatellite instability, the presence of an additional allele not present in reference tissue, were assessed. The quality of profiles obtained with respect to completeness among the archived samples and degradation using the 2 platforms were also compared. Results Profiles obtained using the Identifiler® system were generally more complete, but showed 3-fold higher levels of instability (86%) than those obtained using PowerPlex® 16 (27%). Instances of genetic instability were distributed throughout all loci in both multiplex STR systems. Conclusion After having compared 2 widely used forensic chemistries, we suggest individual validation of each kit for use with samples likely to exhibit instability combined with fixation induced degradation or artifact. A “one size fits all” approach for interpretation of these samples among commercially available multiplexes is not recommended. PMID:19480018

High resolution analysis of soil elements with laser-induced breakdown

DOEpatents

Ebinger, Michael H [Santa Fe, NM; Harris, Ronny D [Los Alamos, NM

2010-04-06

The invention is a system and method of detecting a concentration of an element in a soil sample wherein an opening or slot is formed in a container that supports a soil sample that was extracted from the ground whereupon at least a length of the soil sample is exposed via the opening. At each of a plurality of points along the exposed length thereof, the soil sample is ablated whereupon a plasma is formed that emits light characteristic of the elemental composition of the ablated soil sample. Each instance of emitted light is separated according to its wavelength and for at least one of the wavelengths a corresponding data value related to the intensity of the light is determined. As a function of each data value a concentration of an element at the corresponding point along the length of the soil core sample is determined.

Procedures for sampling radium-contaminated soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fleischhauer, H.L.

Two procedures for sampling the surface layer (0 to 15 centimeters) of radium-contaminated soil are recommended for use in remedial action projects. Both procedures adhere to the philosophy that soil samples should have constant geometry and constant volume in order to ensure uniformity. In the first procedure, a ''cookie cutter'' fashioned from pipe or steel plate, is driven to the desired depth by means of a slide hammer, and the sample extracted as a core or plug. The second procedure requires use of a template to outline the sampling area, from which the sample is obtained using a trowel ormore » spoon. Sampling to the desired depth must then be performed incrementally. Selection of one procedure over the other is governed primarily by soil conditions, the cookie cutter being effective in nongravelly soils, and the template procedure appropriate for use in both gravelly and nongravelly soils. In any event, a minimum sample volume of 1000 cubic centimeters is recommended. The step-by-step procedures are accompanied by a description of the minimum requirements for sample documentation. Transport of the soil samples from the field is then addressed in a discussion of the federal regulations for shipping radioactive materials. Interpretation of those regulations, particularly in light of their application to remedial action soil-sampling programs, is provided in the form of guidance and suggested procedures. Due to the complex nature of the regulations, however, there is no guarantee that our interpretations of them are complete or entirely accurate. Preparation of soil samples for radium-226 analysis by means of gamma-ray spectroscopy is described.« less

Reconstruction of local fallout composition and gamma-ray exposure in a village contaminated by the first USSR nuclear test in the Semipalatinsk nuclear test site in Kazakhstan.

PubMed

Imanaka, Tetsuji; Yamamoto, Masayoshi; Kawai, Kenta; Sakaguchi, Aya; Hoshi, Masaharu; Chaizhunusova, Nailya; Apsalikov, Kazbek

2010-11-01

After the disintegration of the USSR in end of 1991, it became possible for foreign scientists to visit Kazakhstan, in order to investigate the radiological consequences of nuclear explosions that had been conducted at the Semipalatinsk nuclear test site (SNTS). Since the first visit in 1994, our group has been continuing expeditions for soil sampling at various areas around SNTS. The current level of local fallout at SNTS was studied through γ-spectrometry for (137)Cs as well as α-spectrometry for (239,240)Pu. Average values of soil inventory from wide areas around SNTS were 3,500 and 3,700 Bq m(-2) for (137)Cs and (239,240)Pu, respectively, as of January 1, 2000. The average level of (137)Cs is comparable to that in Japan due to global fallout, while the level of (239,240)Pu is several tens of times larger than that in Japan. Areas of strong contamination were found along the trajectories of radioactive fallout, information on which was declassified after the collapse of the USSR. Our recent efforts of soil sampling were concentrated on the area around the Dolon village heavily affected by the radioactive plume from the first USSR atomic bomb test in 1949 and located 110 km east from ground zero of the explosion. Using soil inventory data, retrospective dosimetry was attempted by reconstructing γ-ray exposure from fission product nuclides deposited on the ground. Adopting representative parameters for the initial (137)Cs deposition (13 kBq m(-2)), the refractory/volatile deposition ratio (3.8) and the plume arrival time after explosion (2.5 h), an absorbed dose in air of 600 mGy was obtained for the 1-year cumulative dose in Dolon village, due to the first bomb test in 1949. Considering possible ranges of the parameters, 350 and 910 mGy were estimated for high and low cases of γ-ray dose in air, respectively. It was encouraging that the deduced value was consistent with other estimations using thermal luminescence and archived monitoring data. The present method can be applied to other settlements affected by local fallout from SNTS.

Bacterial Community Diversity of Oil-Contaminated Soils Assessed by High Throughput Sequencing of 16S rRNA Genes.

PubMed

Peng, Mu; Zi, Xiaoxue; Wang, Qiuyu

2015-09-24

Soil bacteria play a major role in ecological and biodegradable function processes in oil-contaminated soils. Here, we assessed the bacterial diversity and changes therein in oil-contaminated soils exposed to different periods of oil pollution using 454 pyrosequencing of 16S rRNA genes. No less than 24,953 valid reads and 6246 operational taxonomic units (OTUs) were obtained from all five studied samples. OTU richness was relatively higher in contaminated soils than clean samples. Acidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Planctomycetes and Proteobacteria were the dominant phyla among all the soil samples. The heatmap plot depicted the relative percentage of each bacterial family within each sample and clustered five samples into two groups. For the samples, bacteria in the soils varied at different periods of oil exposure. The oil pollution exerted strong selective pressure to propagate many potentially petroleum degrading bacteria. Redundancy analysis (RDA) indicated that organic matter was the highest determinant factor for explaining the variations in community compositions. This suggests that compared to clean soils, oil-polluted soils support more diverse bacterial communities and soil bacterial community shifts were mainly controlled by organic matter and exposure time. These results provide some useful information for bioremediation of petroleum contaminated soil in the future.

Missing evidence for the LGM-asynchronity in the Central Spanish Pyrenees in geomorphological, sedimentological and pedological archives

NASA Astrophysics Data System (ADS)

Hirsch, Florian; Raab, Thomas

2016-04-01

According to the state of knowledge, the glacial advances in the Eastern Pyrenees were synchronous with the global LGM during the Late Pleistocene (MIS 2), but the glacial advances in the Central Spanish Pyrenees at MIS 3 were asynchron with the global LGM. Whereas in the Eastern Pyrenees the glacial advances are dated in several well agreeing studies by surface exposure dating of boulders from lateral or terminal moraines, the asynchronity of the Central Spanish Pyrenees was postulated mainly by OSL dating on glacial and fluvial sediments and on radiocarbon dating of pollen from lacustrine deposits. The time difference of about 15 ka raises the question if this is a result of (local) climate factors or owed to failures caused by using several dating techniques on different archives. Anyway, if this time lag is correct, post-LGM formation of soils and sediments from the Late Pleistocene should be different between the Eastern Pyrenees and the Central Spanish Pyrenees. We therefore applied a combined approach of geomorphological, sedimentological and pedological investigations to reconstruct the Late Quaternary landscape development in the Aragon- and Gallego Valley of the Central Spanish Pyrenees. Our study reveals that in both valleys the Pre-Holocene geomorphodynamics on the lateglacial deposits show clear analogies with findings from Pleistocene periglacial landscapes in Central Europe. For MIS 4 and early MIS 3 periglacial processes are proven by loess deposition and formation of solifluction sediments. The glacial sediments, which were dated in earlier studies into mid MIS 3 and counted so far as prove for the asynchronous LGM of the Central Spanish Pyrenees, are covered by periglacial deposits of lateglacial age (14 ka to 11 ka). Surprisingly neither the glacial sediments have pedogenic features that indicate lateglacial soil development, nor do the periglacial deposits show indications for lateglacial soil erosion. Therefore we conclude that soil formation began after the sedimentation of the periglacial deposits, either implying a striking timeframe of more than 15 ka with a stable landscape without any pedogenesis, or the untenability of the MIS 3 age of the glacial sediments. Because we can clearly differentiate further phases of geomorphodynamics during the Holocene with truncated soil profiles and the correlate sediments of soil erosion next to undisturbed soils in periglacial sediments with a lateglacial age, we challenge the thesis of an asynchronous LGM in the Central Spanish Pyrenees and advocate a synchronous LGM in the Gallego- and Aragon valley analog to the Eastern Pyrenees.

Microbiological contamination with moulds in work environment in libraries and archive storage facilities.

PubMed

Zielinska-Jankiewicz, Katarzyna; Kozajda, Anna; Piotrowska, Malgorzata; Szadkowska-Stanczyk, Irena

2008-01-01

Microbiological contamination with fungi, including moulds, can pose a significant health hazard to those working in archives or museums. The species involved include Aspergillus, Penicillium, Geotrichum, Alternaria, Cladosporium, Mucor, Rhizopus, Trichoderma, Fusarium which are associated mostly with allergic response of different types. The aim of the study was to analyse, both in quantitative and qualitative terms, workplace air samples collected in a library and archive storage facilities. Occupational exposure and the related health hazard from microbiological contamination with moulds were assessed in three archive storage buildings and one library. Air samples (total 60) were collected via impact method before work and at hourly intervals during work performance. Surface samples from the artifacts were collected by pressing a counting (RODAC) plate filled with malt extract agar against the surface of the artifacts. The air sample and surface sample analyses yielded 36 different mould species, classified into 19 genera, of which Cladosporium and Penicillium were the most prevalent. Twelve species were regarded as potentially pathogenic for humans: 8 had allergic and 11 toxic properties, the latter including Aspergillus fumigatus. Quantitative analysis revealed air microbiological contamination with moulds at the level ranging from 1.8 x 10(2)-2.3 x 10(3) cfu/m(3). In surface samples from library and archive artifacts, 11 fungal species were distinguished; the number of species per artifact varying from 1-6 and colony count ranging from 4 x 10(1) to 8-10(1) cfu/100 cm(2). Higher contamination levels were found only for Cladosporium cladosporioides (1.48 x 10(3) cfu/100 cm(2)) and Paecillomyces varioti (1.2 x 10(2) cfu/100 cm(2)). At the workposts examined, although no clearly visible signs of mould contamination could be found, the study revealed abundant micromycetes, with the predominant species of Cladosporium and Penicillium. The detected species included also potentially pathogenic microorganisms which can cause allergic and toxic effects, such as Aspergillus fumigatus, that could be hazardous to workers' health. For some species, the concentration levels exceeded the values considered the proposed hygienic standards for total microscopical fungi in occupational settings. The findings of the study point to unsatisfactory hygienic conditions at the worksites examined, resulting in microbiological contamination with moulds, as well as the necessity for prompt remedial activities on the part of the employers.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Adams, Wade C.

Oak Ridge Institute for Science and Education (ORISE) personnel visited the United Nuclear Corporation (UNC) Naval Products site on three separate occasions during the months of October and November 2011. The purpose of these visits was to conduct confirmatory surveys of soils associated with the Argyle Street sewer line that was being removed. Soil samples were collected from six different, judgmentally determined locations in the Argyle Street sewer trench. In addition to the six soil samples collected by ORISE, four replicate soil samples were collected by Cabrera Services, Inc. (CSI) for analysis by the ORISE laboratory. Replicate samples S0010 andmore » S0011 were final status survey (FSS) bias samples; S0012 was an FSS systematic sample; and S0015 was a waste characterization sample. Six soil samples were also collected for background determination. Uranium-235 and uranium-238 concentrations were determined via gamma spectroscopy; the spectra were also reviewed for other identifiable photopeaks. Radionuclide concentrations for these soil samples are provided. In addition to the replicate samples and the samples collected by ORISE, CSI submitted three soil samples for inter-laboratory comparison analyses. One sample was from the background reference area, one was from waste characterization efforts (material inside the sewer line), and one was a FSS sample. The inter-laboratory comparison analyses results between ORISE and CSI were in agreement, except for one sample collected in the reference area. Smear results For Argyle Street sewer pipes are tabulated.« less

AmeriFlux Measurement Component (AMC) Handbook

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reichl, K.; Biraud, S. C.

An AMC system was installed at the Atmospheric Radiation Measurement (ARM) Climate Research Facility’s North Slope Alaska (NSA) Barrow site, also known as NSA C1 at the ARM Data Archive, in August 2012. A second AMC system was installed at the third ARM Mobile Facility deployment at Oliktok Point, also known as NSA M1. This in situ system consists of 12 combination soil temperature and volumetric water content (VWC) reflectometers and one set of upwelling and downwelling PAR sensors, all deployed within the fetch of the Eddy Correlation Flux Measurement System. Soil temperature and VWC sensors placed at two depthsmore » (10 and 30 cm below the vegetation layer) at six locations (or microsites) allow soil property inhomogeneity to be monitored across a landscape. The soil VWC and temperature sensors used at NSA C1 are the Campbell Scientific CS650L and the sensors at NSA M1 use the Campbell Scientific CS655. The two sensors are nearly identical in function, and vendor specifications are based on the CS650 unless otherwise stated.« less

Comparative Efficiency of the Fenwick Can and Schuiling Centrifuge in Extracting Nematode Cysts from Different Soil Types

PubMed Central

Bellvert, Joaquim; Crombie, Kieran; Horgan, Finbarr G.

2008-01-01

The Fenwick can and Schuiling centrifuge are widely used to extract nematode cysts from soil samples. The comparative efficiencies of these two methods during cyst extraction have not been determined for different soil types under different cyst densities. Such information is vital for statutory laboratories that must choose a method for routine, high-throughput soil monitoring. In this study, samples of different soil types seeded with varying densities of potato cyst nematode (Globodera rostochiensis) cysts were processed using both methods. In one experiment, with 200 ml samples, recovery was similar between methods. In a second experiment with 500 ml samples, cyst recovery was higher using the Schuiling centrifuge. For each method and soil type, cyst extraction efficiency was similar across all densities tested. Extraction was efficient from pure sand (Fenwick 72%, Schuiling 84%) and naturally sandy soils (Fenwick 62%, Schuiling 73%), but was significantly less efficient from clay-soil (Fenwick 42%, Schuiling 44%) and peat-soil with high organic matter content (Fenwick 35%, Schuiling 33%). Residual moisture (<10% w/w) in samples prior to analyses reduced extraction efficiency, particularly for sand and sandy soils. For each soil type and method, there were significant linear relationships between the number of cysts extracted and the numbers of cysts in the samples. We discuss the advantages and disadvantages of each extraction method for cyst extraction in statutory soil laboratories. PMID:19259516

Detection of Soil Nitrogen Using Near Infrared Sensors Based on Soil Pretreatment and Algorithms

PubMed Central

Nie, Pengcheng; Dong, Tao; He, Yong; Qu, Fangfang

2017-01-01

Soil nitrogen content is one of the important growth nutrient parameters of crops. It is a prerequisite for scientific fertilization to accurately grasp soil nutrient information in precision agriculture. The information about nutrients such as nitrogen in the soil can be obtained quickly by using a near-infrared sensor. The data can be analyzed in the detection process, which is nondestructive and non-polluting. In order to investigate the effect of soil pretreatment on nitrogen content by near infrared sensor, 16 nitrogen concentrations were mixed with soil and the soil samples were divided into three groups with different pretreatment. The first group of soil samples with strict pretreatment were dried, ground, sieved and pressed. The second group of soil samples were dried and ground. The third group of soil samples were simply dried. Three linear different modeling methods are used to analyze the spectrum, including partial least squares (PLS), uninformative variable elimination (UVE), competitive adaptive reweighted algorithm (CARS). The model of nonlinear partial least squares which supports vector machine (LS-SVM) is also used to analyze the soil reflectance spectrum. The results show that the soil samples with strict pretreatment have the best accuracy in predicting nitrogen content by near-infrared sensor, and the pretreatment method is suitable for practical application. PMID:28492480

Metal Load of the Crops Depending on Land Use, Land Management and Soil Characteristics

NASA Astrophysics Data System (ADS)

Oeztan, Sezin; Duering, Rolf-Alexander

2010-05-01

The increase of pollutant concentrations in soil and in the food chain became very important in the past few decades. Metals of different toxicities (Cd, Zn, As, Cr, Cu, Pb, Ni, Co, V, Tl) occur in soils as a result of weathering, industrial processes, fertilization and atmospheric deposition. Some of them can be absorbed by the plants due to their mobility. The transfer of metals from soil into the plants can be explained by the physicochemical characteristics of the soil such as pH-value, organic matter and clay content. Badly adapted cultivation of the agricultural soils (declining pH-value, application of unsuitable fertilizers) can enhance the mobility of the metals and by the way increase their concentrations in agricultural products. With this study, a field experiment was established and the aim is to test the relations between available metal concentrations in the soil and metal load of the plants depending on the fertilization techniques. The plants and soil samples of the reference sites were taken, heavy metal contents of the soil samples identified by Microwave Assisted Extraction (MAE) and compared to the Aqua Regia Digestion Method for confirming the methodology. For the determination of the metal content in plants, MAE was executed to the selected plant samples and for that procedure, the samples were digested with HNO3 and H2O2 in the microwave oven. Quantation of the metals in soil and in plants was done by ICP-OES Methodology. The evaluation of the first results confirmed that the metal content of the soil is strongly dependent on the properties of different fertilization variants (N,P,K) used and physicochemical characteristics of the soils. According to the fertilization variants, total metal contents of the soil are increased in the soil samples which have high amounts of N, P, K fertilization. Soils which were enforced with high P fertilization degrees had significantly higher total Cd content. Results on the Cd content of the plant samples also revealed that transition of metals from soil to plants depend heavily on the fertilizer since plant samples and soil samples treated with the same fertilizer showed similar results.

An Archive of Spectra from the Mayall Fourier Transform Spectrometer at Kitt Peak

NASA Astrophysics Data System (ADS)

Pilachowski, C. A.; Hinkle, K. H.; Young, M. D.; Dennis, H. B.; Gopu, A.; Henschel, R.; Hayashi, S.

2017-02-01

We describe the SpArc science gateway for spectral data obtained using the Fourier Transform Spectrometer (FTS) in operation at the Mayall 4-m telescope at the Kitt Peak National Observatory during the period from 1975 through 1995. SpArc is hosted by Indiana University Bloomington and is available for public access. The archive includes nearly 10,000 individual spectra of more than 800 different astronomical sources including stars, nebulae, galaxies, and solar system objects. We briefly describe the FTS instrument itself and summarize the conversion of the original interferograms into spectral data and the process for recovering the data into FITS files. The architecture of the archive is discussed and the process for retrieving data from the archive is introduced. Sample use cases showing typical FTS spectra are presented.

Detection of environmental sources of Histoplasma capsulatum in Chiang Mai, Thailand, by nested PCR.

PubMed

Norkaew, Treepradab; Ohno, Hideaki; Sriburee, Pojana; Tanabe, Koichi; Tharavichitkul, Prasit; Takarn, Piyawan; Puengchan, Tanpalang; Bumrungsri, Sara; Miyazaki, Yoshitsugu

2013-12-01

Histoplasmosis is a systemic mycosis caused by inhaling spores of Histoplasma capsulatum, a dimorphic fungus. This fungus grows in soil contaminated with bat and avian excreta. Each year, patients with disseminated histoplasmosis have been diagnosed in Chiang Mai, northern Thailand. No published information is currently available on the environmental sources of this fungus in Chiang Mai or anywhere else in Thailand. The aim of this study was to detect H. capsulatum in soil samples contaminated with bat guano and avian droppings by nested PCR. Two hundred and sixty-five samples were collected from the following three sources: soil contaminated with bat guano, 88 samples; soil contaminated with bird droppings, 86 samples; and soil contaminated with chicken droppings, 91 samples. Genomic DNA was directly extracted from each sample, and H. capsulatum was detected by nested PCR using a primer set specific to a gene encoding 100-kDa-like protein (HcI, HcII and HcIII, HcIV). Histoplasma capsulatum was detected in seven of 88 soil samples contaminated with bat guano, one of 21 soil samples contaminated with pigeon droppings and 10 of 91 soil samples contaminated with chicken droppings. The results indicate the possibility of the association of bat guano and chicken droppings with H. capsulatum in this area of Thailand.

STP K Basin Sludge Sample Archive at the Pacific Northwest National Laboratory FY2014

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fiskum, Sandra K.; Smoot, Margaret R.; Schmidt, Andrew J.

2014-06-01

The Pacific Northwest National Laboratory (PNNL) currently houses 88 samples (~10.5 kg) of K Basin sludge (81 wet and seven dry samples) on behalf of the Sludge Treatment Project (STP), which is managed for the U.S. Department of Energy (DOE) by the CH2M Hill Plateau Remediation Company (CHPRC). Selected samples are intended to serve, in part, as sentinels to enhance understanding of sludge properties after long-term storage, and thus enhance understanding of sludge behavior following transfer to sludge transfer and storage containers (STSCs) and storage at the Hanford 200 Area central plateau. In addition, remaining samples serve in contingency formore » future testing requirements. At PNNL, the samples are tracked and maintained under a prescriptive and disciplined monthly sample-monitoring program implemented by PNNL staff. This report updates the status of the K Basin archive sludge sample inventory to April 2014. The previous inventory status report, PNNL 22245 (Fiskum et al. 2013, limited distribution report), was issued in February of 2013. This update incorporates changes in the inventory related to repackaging of 17 samples under test instructions 52578 TI052, K Basin Sludge Sample Repackaging for Continued Long Term Storage, and 52578 TI053, K Basin Sludge Sample Repackaging Post-2014 Shear Strength Measurements. Note that shear strength measurement results acquired in 2014 are provided separately. Specifically, this report provides the following: • a description of the K Basin sludge sample archive program and the sample inventory • a summary and images of the samples that were repackaged in April 2014 • up-to-date images and plots of the settled density and water loss from all applicable samples in the inventory • updated sample pedigree charts, which provide a roadmap of the genesis and processing history of each sample in the inventory • occurrence and deficiency reports associated with sample storage and repackaging« less

Comparison of soil microbial respiration and carbon turnover under perennial and annual biofuel crops in two agricultural soils

NASA Astrophysics Data System (ADS)

Szymanski, L. M.; Marin-Spiotta, E.; Sanford, G. R.; Jackson, R. D.; Heckman, K. A.

2015-12-01

Bioenergy crops have the potential to provide a low carbon-intensive alternative to fossil fuels. More than a century of agricultural research has shown that conventional cropping systems can reduce soil organic matter (SOM) reservoirs, which cause long-term soil nutrient loss and C release to the atmosphere. In the face of climate change and other human disruptions to biogeochemical cycles, identifying biofuel crops that can maintain or enhance soil resources is desirable for the sustainable production of bioenergy. The objective of our study was to compare the effects of four biofuel crop treatments on SOM dynamics in two agricultural soils: Mollisols at Arlington Agricultural Research Station in Wisconsin and Alfisols at Kellogg Biological Station in Michigan, USA. We used fresh soils collected in 2013 and archived soils from 2008 to measure the effects of five years of crop management. Using a one-year long laboratory soil incubation coupled with a regression model and radiocarbon measurements, we separated soils into three SOM pools and their corresponding C turnover times. We found that the active pool, or biologically available C, was more sensitive to management and is an earlier indicator of changes to soil C dynamics than bulk soil C measurements. There was no effect of treatment on the active pool size at either site; however, the percent C in the active pool decreased, regardless of crop type, in surface soils with high clay content. At depth, the response of the slow pool differed between annual and perennial cropping systems. The distribution of C among SOM fractions varied between the two soil types, with greater C content associated with the active fraction in the coarser textured-soil and greater C content associated with the slow-cycling fraction in the soils with high clay content. These results suggest that the effects of bioenergy crops on soil resources will vary geographically, with implications for the carbon-cost of biocrop production.

The electronic Rothamsted Archive (e-RA), an online resource for data from the Rothamsted long-term experiments

PubMed Central

Perryman, Sarah A. M.; Castells-Brooke, Nathalie I. D.; Glendining, Margaret J.; Goulding, Keith W. T.; Hawkesford, Malcolm J.; Macdonald, Andy J.; Ostler, Richard J.; Poulton, Paul R.; Rawlings, Christopher J.; Scott, Tony; Verrier, Paul J.

2018-01-01

The electronic Rothamsted Archive, e-RA (www.era.rothamsted.ac.uk) provides a permanent managed database to both securely store and disseminate data from Rothamsted Research’s long-term field experiments (since 1843) and meteorological stations (since 1853). Both historical and contemporary data are made available via this online database which provides the scientific community with access to a unique continuous record of agricultural experiments and weather measured since the mid-19th century. Qualitative information, such as treatment and management practices, plans and soil information, accompanies the data and are made available on the e-RA website. e-RA was released externally to the wider scientific community in 2013 and this paper describes its development, content, curation and the access process for data users. Case studies illustrate the diverse applications of the data, including its original intended purposes and recent unforeseen applications. Usage monitoring demonstrates the data are of increasing interest. Future developments, including adopting FAIR data principles, are proposed as the resource is increasingly recognised as a unique archive of data relevant to sustainable agriculture, agroecology and the environment. PMID:29762552

Luminescence chronology of the loess record from the Tönchesberg section - a comparison of using quartz and feldspar as dosimeter to extend the age range beyond the Eemian

NASA Astrophysics Data System (ADS)

Dorothe Schmidt, Esther; Frechen, Manfred; Murray, Andrew S.; Tsukamoto, Sumiko

2010-05-01

The loess-paleosol sequences of the Tönchesberg section, located in the East Eifel Volcanic field (Germany) provide an excellent climate archive of the late Middle and the Upper Pleistocene in the Middle Rhine area. Loess deposits from the last Glacial (Würmian) and the penultimate Glacial (Rissian) are up to 12 m and 15 m thick, respectively, and intercalated by palaeosols. Optically stimulated luminescence (OSL), thermally transferred optically stimulated luminescence (TT-OSL) and infrared stimulated luminescence (IRSL) measurements were carried out on 14 samples from the Tönchesberg section to determine the deposition age and to set up a more reliable chronological framework for the penultimate and last interglacial-glacial cycle. The fine-grained quartz OSL and polymineral IRSL ages are in good agreement with each other and also with the geologically estimated age, but the quartz TT-OSL ages are overestimated. The OSL and IRSL ages range from 16.8 ± 1.2 to 189 ± 16 ka indicating that the youngest loess and the weakly developed soils were deposited during marine isotope stage (MIS) 2 and 3 and that the two marker loess were most likely accumulated in the transition MIS 4/5. Loess and reworked loess postdating the Eemian soil yield ages of 110-115 ka indicating that these deposits very likely correlate to MIS 5d. Loess deposits taken below the Eemian soil are attributed to the transition MIS 6/7. A weakly developed soil above the Tönchesberg scoria yield an age of 189 ± 16 ka indicating an interstadial soil formation during MIS 7. This is in good agreement with preliminary 40Ar/39Ar-ages for the Tönchesberg scoria and the intercalated tephra layers. Reliable age estimates up to ~70 ka could be obtained using quartz OSL and up to ~190 ka using the pulsed post-IR IR signal from feldspar. Hence the infrared stimulated luminescence (IRSL) is considered as the best approach to date the loess from the Middle Rhine area > 70 ka.

Global tropospheric experiment at the Hong Kong Atmosphere Chemistry Measurement Station

NASA Technical Reports Server (NTRS)

Carroll, Mary Ann; Wang, Tao

1995-01-01

The major activities of the Global Tropospheric Experiment at the Hong Kong Atmospheric Chemistry Measurement Station are presented for the period 1 January - 31 December 1995. Activities included data analysis, reduction, and archiving of atmospheric measurements and sampling. Sampling included O3, CO, SO2, NO, TSP, RSP, and ozone column density. A data archive was created for the surface meteorological data. Exploratory data analysis was performed, including examination of time series, frequency distributions, diurnal variations and correlation. The major results have been or will be published in scientific journals as well as presented at conferences/workshops. Abstracts are attached.

"Small" data in a big data world: archiving terrestrial ecology data at ORNL DAAC

NASA Astrophysics Data System (ADS)

Santhana Vannan, S. K.; Beaty, T.; Boyer, A.; Deb, D.; Hook, L.; Shrestha, R.; Thornton, M.; Virdi, M.; Wei, Y.; Wright, D.

2016-12-01

The Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC http://daac.ornl.gov), a NASA-funded data center, archives a diverse collection of terrestrial biogeochemistry and ecological dynamics observations and models in support of NASA's Earth Science program. The ORNL DAAC has been addressing the increasing challenge of publishing diverse small data products into an online archive while dealing with the enhanced need for integration and availability of these data to address big science questions. This paper will show examples of "small" diverse data holdings - ranging from the Daymet model output data to site-based soil moisture observation data. We define "small" by the data volume of these data products compared to petabyte scale observations. We will highlight the use of tools and services for visualizing diverse data holdings and subsetting services such as the MODIS land products subsets tool (at ORNL DAAC) that provides big MODIS data in small chunks. Digital Object Identifiers (DOI) and data citations have enhanced the availability of data. The challenge faced by data publishers now is to deal with the increased number of publishable data products and most importantly the difficulties of publishing small diverse data products into an online archive. This paper will also present our experiences designing a data curation system for these types of data. The characteristics of these data will be examined and their scientific value will be demonstrated via data citation metrics. We will present case studies of leveraging specialized tools and services that have enabled small data sets to realize their "big" scientific potential. Overall, we will provide a holistic view of the challenges and potential of small diverse terrestrial ecology data sets from data curation to distribution.

Assessment of grass root effects on soil piping in sandy soils using the pinhole test

NASA Astrophysics Data System (ADS)

Bernatek-Jakiel, Anita; Vannoppen, Wouter; Poesen, Jean

2017-04-01

Soil piping is a complex land degradation process, which involves the hydraulic removal of soil particles by subsurface flow. This process is frequently underestimated and omitted in most soil erosion studies. However, during the last decades several studies reported the importance of soil piping in various climatic zones and for a wide range of soil types. Compared to sheet, rill and gully erosion, very few studies focused on the factors controlling piping and, so far, there is no research study dealing with the effects of plant roots on piping susceptibility of soils having a low cohesion. The objective of this study is therefore to assess the impact of grass root density (RD) on soil piping in sandy soils using the pinhole test. The pinhole test involves a water flow passing through a hole of 1 mm diameter in a soil specimen (sampled using a metal ring with a diameter of 5 cm and a length of 8 cm), under varying hydraulic heads (50 mm, 180 mm, 380 mm and 1020 mm; Nadal-Romero et al., 2011). To provide a quantitative assessment piping susceptibility of the soil sample, the pipeflow discharge (cm3 s-1) and the sediment discharge (g s-1) were measured every minute during a five minute test. Bare and root-permeated samples were tested, using a sandy soil with a sand, silt, clay content of respectively, 94%, 4% and 2%. The root-permeated topsoil samples were taken in field plots sown with a mixture of grasses with fibrous roots. All soil samples were placed on a sandbox with a 100 mm head for 24 hours to ensure a similar water content for all samples. In total, 67 pinhole tests (lasting 5 minutes each) were conducted, i.e. 43 root-permeated soil samples with RD ranging from 0.01 to 0.93 kg m-3 and 24 root-free soil samples as a reference. Clear piping erosion could be observed in 65% of the root-free soil samples, whereas only 17% of rooted soil samples revealed clear piping erosion during the tests. Statistical analyses show that there is a negative correlation (-0.41, p < 0.05) between RD and sediment discharge. Mean pipeflow discharge was 1.4 times larger for the root-free samples compared to the root-permeated samples, while mean sediment discharge was 3 times higher for the root-free samples compared to the rooted samples. This indicates that the presence of fibrous roots in topsoils decreases the susceptibility to soil piping significantly. Furthermore, a positive correlation between the hydraulic head (50-1020 mm) and sediment discharge was observed. Overall, our results suggest that root density is a highly relevant factor for decreasing the soil piping erosion rates in the sandy topsoils. The presence of even very low root densities (< 1 kg m3) decrease pipeflow and sediment discharge. A. Bernatek-Jakiel is supported by the ETIUDA doctoral scholarship (UMO-2015/16/T/ST10/00505) financed by the National Science Centre of Poland. Reference: Nadal-Romero, E., Verachtert, E., Maes, R., Poesen, J., 2011. Quantitative assessment of the piping erosion susceptibility of loess-derived soil horizons using the pinhole test. Geomorphology 135, 66-79.

Soil analyses for 1,3-dichloropropene (1,3-DCP), sodium n-methyldithiocarbamate (metam-sodium), and their degradation products near Fort Hall Idaho, September 1999 through March 2000

USGS Publications Warehouse

Parliman, D.J.

2001-01-01

Between September 1999 and March 2000, soil samples from the Fort Hall, Idaho, area were analyzed for two soil fumigants, 1,3-dichloropropene (1,3-DCP) and sodium n-methyldithiocarbamate (metam-sodium), and their degradation products. Ground water is the only source of drinking water at Fort Hall, and the purpose of the investigation was to determine potential risk of ground-water contamination from persistence and movement of these pesticides in cropland soils. 1,3-DCP, metam-sodium, or their degradation products were detected in 42 of 104 soil samples. The samples were collected from 1-, 2-, and 3-foot depths in multiple backhoe trenches during four sampling events—before pesticide application in September; after application in October; before soil freeze in December; and after soil thaw in March. In most cases, concentrations of the pesticide compounds were at or near their laboratory minimum reporting limits. U.S. Environmental Protection Agency Method 5035 was used as the guideline for soil sample preparation and analyses, and either sodium bisulfate (NaHSO4), an acidic preservative, or pesticide-free water was added to samples prior to analyses. Addition of NaHSO4 to the samples resulted in a greater number of compound detections, but pesticide-free water was added to most samples to avoid the strong reactions of soil carbonate minerals with the NaHSO4. As a result, nondetection of compounds in samples containing pesticide-free water did not necessarily indicate that the compounds were absent. Detections of these compounds were inconsistent among trenches with similar soil characteristics and histories of soil fumigant use. Compounds were detected at different depths and different trench locations during each sampling event. Overall results of this study showed that the original compounds or their degradation products can persist in soil 6 months or more after their application and are present to at least 3 feet below land surface in some areas. A few of the soil analyses results were unexpected. Degradation products of metam-sodium were detected in samples from croplands with a history of 1,3-DCP applications only, and were not detected in samples from croplands with a history of metam-sodium applications. Although 1,2-dibromoethane (EDB) has not been used in the area for many years, EDB was detected in a few soil samples. The presence of EDB in soil could be caused by irrigation of croplands with EDBcontaminated ground water. Analyses of these soil samples resulted in many unanswered questions, and further studies are needed. One potential study to determine vertical extent of pesticide compound migration in sediments, for example, would include analysis of one or more columns of soil and sediments (land surface to ground water, about 35 to 50 feet below land surface) in areas with known soil contamination. Another study would expand the scope of soil contamination to include broader types of cropland conditions and compound analyses.

A new in-situ method to determine the apparent gas diffusion coefficient of soils

NASA Astrophysics Data System (ADS)

Laemmel, Thomas; Paulus, Sinikka; Schack-Kirchner, Helmer; Maier, Martin

2015-04-01

Soil aeration is an important factor for the biological activity in the soil and soil respiration. Generally, gas exchange between soil and atmosphere is assumed to be governed by diffusion and Fick's Law is used to describe the fluxes in the soil. The "apparent soil gas diffusion coefficient" represents the proportional factor between the flux and the gas concentration gradient in the soil and reflects the ability of the soil to "transport passively" gases through the soil. One common way to determine this coefficient is to take core samples in the field and determine it in the lab. Unfortunately this method is destructive and needs laborious field work and can only reflect a small fraction of the whole soil. As a consequence insecurity about the resulting effective diffusivity on the profile scale must remain. We developed a new in-situ method using new gas sampling device, tracer gas and inverse soil gas modelling. The gas sampling device contains several sampling depths and can be easily installed into vertical holes of an auger, which allows for fast installation of the system. At the lower end of the device inert tracer gas is injected continuously. The tracer gas diffuses into the surrounding soil. The resulting distribution of the tracer gas concentrations is used to deduce the diffusivity profile of the soil. For Finite Element Modeling of the gas sampling device/soil system the program COMSOL is used. We will present the results of a field campaign comparing the new in-situ method with lab measurements on soil cores. The new sampling pole has several interesting advantages: it can be used in-situ and over a long time; so it allows following modifications of diffusion coefficients in interaction with rain but also vegetation cycle and wind.

Hyperspectral imaging to investigate the distribution of organic matter and iron down the soil profile

NASA Astrophysics Data System (ADS)

Hobley, Eleanor; Kriegs, Stefanie; Steffens, Markus

2017-04-01

Obtaining reliable and accurate data regarding the spatial distribution of different soil components is difficult due to issues related with sampling scale and resolution on the one hand and laboratory analysis on the other. When investigating the chemical composition of soil, studies frequently limit themselves to two dimensional characterisations, e.g. spatial variability near the surface or depth distribution down the profile, but rarely combine both approaches due to limitations to sampling and analytical capacities. Furthermore, when assessing depth distributions, samples are taken according to horizon or depth increments, resulting in a mixed sample across the sampling depth. Whilst this facilitates mean content estimation per depth increment and therefore reduces analytical costs, the sample information content with regards to heterogeneity within the profile is lost. Hyperspectral imaging can overcome these sampling limitations, yielding high resolution spectral data of down the soil profile, greatly enhancing the information content of the samples. This can then be used to augment horizontal spatial characterisation of a site, yielding three dimensional information into the distribution of spectral characteristics across a site and down the profile. Soil spectral characteristics are associated with specific chemical components of soil, such as soil organic matter or iron contents. By correlating the content of these soil components with their spectral behaviour, high resolution multi-dimensional analysis of soil chemical composition can be obtained. Here we present a hyperspectral approach to the characterisation of soil organic matter and iron down different soil profiles, outlining advantages and issues associated with the methodology.

Revisiting Atmospheric Lead in NYC - Comparison of Archived Air Filters to Urban Park Sediments and Soils

NASA Astrophysics Data System (ADS)

Chillrud, S. N.; Ross, J. M.; Yan, B.; Bopp, R.

2015-12-01

Urban lake sediments have the potential to be used for reconstructing history of aerosols, providing data before the start of urban air quality monitoring. In a previous study, the similarity between radionuclide and excess Pb inventories (57 g/m^2) in Central Park Lake (CPL) sediments and those same parameters in Central Park soils (CPS) was interpreted to indicate that urban lake sediment cores from CPL represent deposition of atmospheric aerosols over the history of the park, which was constructed in the 1860s. Furthermore, metal ratios and metal chronologies indicated that incineration was the major source of Pb to the NYC atmosphere over the 20th century. In this report, we compare the lake chronologies for metals to a set of archived air filters collected by the Department of Energy's Environmental Measurement Lab (EML). These weekly filters of total suspended particulates (TSP) were collected by a high volume sampler located in lower Manhattan for radionuclides as part of the program focused on documenting radioactive fallout from nuclear weapons testing. Metal concentrations measured in subsamples of the EML filters collected between the 1970s to 1990s showed Pb decreasing more slowly than the records of Pb added to gasoline. Metal ratios in the filters were similar to the ratios measured in CPL sediments; the Pb to Sn ratios were roughly 20:1 and the Pb to Zn ratios were in close to 1. The similarity of the ratios provides additional solid support that the CP Lake sediment cores reflect atmospheric inputs. The enrichment of Pb in the large aerosol particle fraction (TSP), relative to fine PM2.5 fraction, demonstrates that the resuspended NYC soils and their historical contaminant burden, are the primary, current source of Pb to NYC air.

Biogenic NO emission from a spruce forest soil in the Fichtelgebirge (Germany) under the influence of different understorey vegetation cover

NASA Astrophysics Data System (ADS)

Bargsten, A.; Andreae, M. O.; Meixner, F. X.

2009-04-01

Within the framework of the EGER project (ExchanGE processes in mountainous Regions) soil samples have been taken from the spruce forest site "Weidenbrunnen" (Fichtelgebirge, Germany) in September 2008 to determine the NO exchange in the laboratory and for a series of soil analyses. The soil was sampled below different understorey vegetation covers: young Norway spruce, moss/litter, blueberries and grass. We investigated the net NO release rate from corresponding organic layers as well as from the A horizon of respective soils. Additionally we measured pH, C/N ratio, contents of ammonium, nitrate, and organic C, bulk density, the thickness of the organic layer and the quality of the organic matter. Net NO release rates (as well as the NO production and NO consumption rates) from the soil samples were determined by a fully automated laboratory incubation & fumigation system. Purified dry air passed five dynamic incubation chambers, four containing water saturated soil samples and one reference chamber. By this procedure, the soil samples dried out slowly (within 2-6 days), covering the full range of soil moisture (0-300% gravimetric soil moisture). To quantify NO production and NO consumption rates separately, soil samples were fumigated with zero-air (approx. 0 ppb NO) and air of 133 ppb NO. The chambers were placed in a thermostatted cabinet for incubation at 10 an 20˚ C. NO and H2O concentrations at the outlet of the five dynamic chambers were measured sequentially by chemiluminescence and IR-absorption based analyzers, switching corresponding valves every two minutes. Net NO release rates were determined from the NO concentration difference between soil containing and reference chambers. Corresponding measurements of H2O mixing ratio yielded the evaporation loss of the soil samples, which (referenced to the gravimetric soil water content before and after the incubation experiment) provided the individual soil moisture contents of each soil samples during the incubation experiment. Our contribution focus net NO release rates, NO production and NO consumption rates of spruce forest soils sampled under different understorey vegetation covers. Generally, organic layers show significant higher NO production and NO consumption rates than the soils from the corresponding A horizons. Soils under the understorey vegetation cover "moos/litter" revealed the lowest NO production and NO consumption rates. Net NO release rates, NO production and NO consumption rates of soil samples obtained below the four different under- storey vegetation covers will be discussed in terms of pH, C/N ratio, contents of ammonium, nitrate, and organic C, bulk density, thickness of organic layer, as well as quality of the organic matter.

Rapid analysis of 2,4-D in soil samples by modified Soxhlet apparatus using HPLC with UV detection.

PubMed

Kashyap, Sanjay M; Pandya, Girish H; Kondawar, Vivek K; Gabhane, Sanjay S

2005-02-01

The 2,4-dichlorophenoxy acetic acid (2,4-D) is used as a systemic herbicide to control broadleaf weeds in wheat, corn, range land/pasture land, sorghum, and barley. In this study, a fast and efficient method is developed by selection of modified extraction apparatus and high-performance liquid chromatography (HPLC)-UV conditions for the determination of 2,4-D in soil samples. The method is applied to the study of soil samples collected from the agricultural field. The herbicide is extracted from soil samples by acetonitrile in a modified Soxhlet apparatus. The advantages of the apparatus are that it uses small volume of organic solvent, reduced time of extraction, and better recovery of the analyte. The extract is filtered using a very fine microfiber paper. The total extract is concentrated in a rotatory evaporator, dried under ultrahigh pure N2, and finally reconstituted in 1 mL of acetonitrile. HPLC-UV at 228 nm is used for analysis. The herbicide is identified and quantitated using the HPLC system. The method is validated by the analysis of spiked soil samples. Recoveries obtained varied from 85% to 100% for spiked soil samples. The limit of quantitation (LOQ) and the limit of detection (LOD) are 0.010 and 0.005 parts per million (ppm), respectively, for spiked soil samples. The LOQ and LOD are 0.006 and 0.003 ppm for unspiked soil samples. The measured concentrations of 2,4-D in spiked soil samples are between 0.010 and 0.020 ppm with an average of 0.016 +/- 0.003 ppm. For unspiked soil samples it is between 0.006 ppm and 0.012 ppm with an average of 0.009 +/- 0.002 ppm. The measured concentrations of 2,4-D in soil samples are generally low and do not exceed the regulatory agencies guidelines.

Assessment of Soil-Gas, Surface-Water, and Soil Contamination at the Installation Railhead, Fort Gordon, Georgia, 2008-2009

USGS Publications Warehouse

Landmeyer, James E.; Harrelson, Larry G.; Ratliff, W. Hagan; Wellborn, John B.

2010-01-01

The U.S. Geological Survey, in cooperation with the U.S. Department of the Army Environmental and Natural Resources Management Office of the U.S. Army Signal Center and Fort Gordon, assessed soil gas, surface water, and soil for contaminants at the Installation Railhead (IR) at Fort Gordon, Georgia, from October 2008 to September 2009. The assessment included delineation of organic contaminants present in soil-gas samples beneath the IR, and in a surface-water sample collected from an unnamed tributary to Marcum Branch in the western part of the IR. Inorganic contaminants were determined in a surface-water sample and in soil samples. This assessment was conducted to provide environmental contamination data to Fort Gordon personnel pursuant to requirements of the Resource Conservation and Recovery Act Part B Hazardous Waste Permit process. Soil-gas samples collected within a localized area on the western part of the IR contained total petroleum hydrocarbons; benzene, toluene, ethylbenzene, and total xylenes (referred to as BTEX); and naphthalene above the method detection level. These soil-gas samples were collected where buildings had previously stood. Soil-gas samples collected within a localized area contained perchloroethylene (PCE). These samples were collected where buildings 2410 and 2405 had been. Chloroform and toluene were detected in a surface-water sample collected from an unnamed tributary to Marcum Branch but at concentrations below the National Primary Drinking Water Standard maximum contaminant level (MCL) for each compound. Iron was detected in the surface-water sample at 686 micrograms per liter (ug/L) and exceeded the National Secondary Drinking Water Standard MCL for iron. Metal concentrations in composite soil samples collected at three locations from land surface to a depth of 6 inches did not exceed the U.S. Environmental Protection Agency Regional Screening Levels for industrial soil.

On a path towards long-term sampling following the Deepwater Horizon: Initial insights

NASA Astrophysics Data System (ADS)

Reddy, C. M.

2012-12-01

During the past two decades in the United States, few areas contaminated from an oil spill have been revisited on the time scales from months to years. The lack of sampling is a missed opportunity to shine light on long-term processes, evaluate recovery, identify compounds most likely to persist, and apply new chemical and biological techniques. To address this issue, my laboratory has begun a land-based effort to collect oiled samples from the Gulf of Mexico beaches from the Deepwater Horizon disaster. Each sample is archived, analyzed, and available for others via an online repository. Detailed analysis of many of these samples has already been fruitful on determining the fate of the spilled oil, which will be discussed. This meeting is an ideal time to discuss strategies for long-term sampling and archiving. With support from the Gulf Research Initiative for the next nine years, the opportunities to use these samples will be frequent.

Metal pollution (Cd, Pb, Zn, and As) in agricultural soils and soybean, Glycine max, in southern China.

PubMed

Zhao, Yunyun; Fang, Xiaolong; Mu, Yinghui; Cheng, Yanbo; Ma, Qibin; Nian, Hai; Yang, Cunyi

2014-04-01

Crops produced on metal-polluted agricultural soils may lead to chronic toxicity to humans via the food chain. To assess metal pollution in agricultural soils and soybean in southern China, 30 soybean grain samples and 17 soybean-field soil samples were collected from 17 sites in southern China, and metal concentrations of samples were analyzed by graphite furnace atomic absorption spectrophotometer. The integrated pollution index was used to evaluate if the samples were contaminated by Cd, Pb, Zn and As. Results showed that Cd concentration of 12 samples, Pb concentration of 2 samples, Zn concentration of 2 samples, and As concentrations of 2 samples were above the maximum permissible levels in soils. The integrated pollution index indicated that 11 of 17 soil samples were polluted by metals. Metal concentrations in soybean grain samples ranged from 0.11 to 0.91 mg kg(-1) for Cd; 0.34 to 2.83 mg kg(-1) for Pb; 42 to 88 mg kg(-1) for Zn; and 0.26 to 5.07 mg kg(-1) for As, which means all 30 soybean grain samples were polluted by Pb, Pb/Cd, Cd/Pb/As or Pb/As. Taken together, our study provides evidence that metal pollution is an important concern in agricultural soils and soybeans in southern China.

Soil sampling and analytical strategies for mapping fallout in nuclear emergencies based on the Fukushima Dai-ichi Nuclear Power Plant accident.

PubMed

Onda, Yuichi; Kato, Hiroaki; Hoshi, Masaharu; Takahashi, Yoshio; Nguyen, Minh-Long

2015-01-01

The Fukushima Dai-ichi Nuclear Power Plant (FDNPP) accident resulted in extensive radioactive contamination of the environment via deposited radionuclides such as radiocesium and (131)I. Evaluating the extent and level of environmental contamination is critical to protecting citizens in affected areas and to planning decontamination efforts. However, a standardized soil sampling protocol is needed in such emergencies to facilitate the collection of large, tractable samples for measuring gamma-emitting radionuclides. In this study, we developed an emergency soil sampling protocol based on preliminary sampling from the FDNPP accident-affected area. We also present the results of a preliminary experiment aimed to evaluate the influence of various procedures (e.g., mixing, number of samples) on measured radioactivity. Results show that sample mixing strongly affects measured radioactivity in soil samples. Furthermore, for homogenization, shaking the plastic sample container at least 150 times or disaggregating soil by hand-rolling in a disposable plastic bag is required. Finally, we determined that five soil samples within a 3 m × 3-m area are the minimum number required for reducing measurement uncertainty in the emergency soil sampling protocol proposed here. Copyright © 2014 Elsevier Ltd. All rights reserved.

Contamination valuation of soil and groundwater source at anaerobic municipal solid waste landfill site.

PubMed

Aziz, Shuokr Qarani; Maulood, Yousif Ismael

2015-12-01

The present work aimed to determine the risks that formed landfill leachate from anaerobic Erbil Landfill Site (ELS) poses on groundwater source and to observe the effects of disposed municipal solid waste (MSW) on soil properties. The study further aims to fill the gap in studies on the effects of disposed MSW and produced leachate on the groundwater characteristics and soil quality at ELS, Iraq. Soil, leachate, and groundwater samples were collected from ELS for use as samples in this study. Unpolluted groundwater samples were collected from an area outside of the landfill. Field and laboratory experiments for the soil samples were conducted. Chemical analyses for the soil samples such as organic matter, total salts, and SO4 (=) were also performed. Raw leachate and groundwater samples were analyzed using physical and chemical experiments. The yields for sorptivity, steady-state infiltration rate, and hydraulic conductivity of the soil samples were 0.0006 m/√s, 0.00004 m/s, and 2.17 × 10(-5) m/s, respectively. The soil at ELS was found to be light brown clayey gravel with sand and light brown gravely lean clay layers with low permeability. Unprocessed leachate analysis identified the leachate as stabilized. Findings showed that the soil and groundwater at the anaerobic ELS were contaminated.

Hg Storage and Mobility in Tundra Soils of Northern Alaska

NASA Astrophysics Data System (ADS)

Olson, C.; Obrist, D.

2017-12-01

Atmospheric mercury (Hg) can be transported over long distances to remote regions such as the Arctic where it can then deposit and temporarily be stored in soils. This research aims to improve the understanding of terrestrial Hg storage and mobility in the arctic tundra, a large receptor area for atmospheric deposition and a major source of Hg to the Arctic Ocean. We aim to characterize spatial Hg pool sizes across various tundra sites and to quantify the mobility of Hg from thawing tundra soils using laboratory mobility experiments. Active layer and permafrost soil samples were collected in the summer of 2014 and 2015 at the Toolik Field Station in northern Alaska (68° 38' N) and along a 200 km transect extending from Toolik to the Arctic Ocean. Soil samples were analyzed for total Hg concentration, bulk density, and major and trace elements. Hg pool sizes were estimated by scaling up Hg soil concentrations using soil bulk density measurements. Mobility of Hg in tundra soils was quantified by shaking soil samples with ultrapure Milli-Q® water as an extracting solution for 24 and 72 hours. Additionally, meltwater samples were collected for analysis when present. The extracted supernatant was analyzed for total Hg, dissolved organic carbon, cations and anions, redox, and ph. Mobility of Hg from soil was calculated using Hg concentrations determined in solid soil samples and in supernatant of soil solution samples. Results of this study show Hg levels in tundra mineral soils that are 2-5 times higher than those observed at temperate sites closer to pollution sources. Most of the soil Hg was located in mineral horizons where Hg mass accounted for 72% of the total soil pool. Soil Hg pool sizes across the tundra sites were highly variable (166 - 1,365 g ha-1; avg. 419 g ha-1) due to the heterogeneity in soil type, bulk density, depth to frozen layer, and soil Hg concentration. Preliminary results from the laboratory experiment show higher mobility of Hg in mineral soils of active layer samples (0.062%) than in permafrost soils (0.026%) where soil Hg concentrations were lower. Mobilization of Hg stored in thawing permafrost soils could lead to accelerated export of Hg to aquatic systems, with major implications to Arctic wildlife and human health.

Are There Dangerous Levels of Lead in Local Soil?

NASA Astrophysics Data System (ADS)

Pita, I.

2017-12-01

The purpose of this experiment was to show that comparing random soil samples from areas in New Orleans; the Garden District will have the highest levels of lead in soil. My Independent variable was the soil samples collected from locations in the Garden District area of New Orleans, and other locations throughout New Orleans. The control was the soil samples collected from the local playground in the New Orleans area. My dependent variable was the lead soil test kit, using ppm (parts per million) of lead to show concentration. 400 ppm + in bare soil where children play is considered dangerous hazard levels. 1,000 + ppm in all other areas is considered dangerous hazard levels. The first step to my experiment, I collected soil samples from different locations throughout the Garden District area of New Orleans. The second step to my experiment, I conducted the lead soil testing in a controlled area at home in a well ventilated room, using all the necessary safety equipment needed, I began testing a 24 hour test period and a 48 hour test period. I then collected the data from both test. The results showed that soil samples from the Garden District area compared to the other sample locations had higher lead concentrations in the soil. This backed my hypothesis when comparing soil samples from areas in New Orleans, the Garden District will have the highest lead levels. In conclusion these experiments showed that with the soil samples collected, there were higher concentrations of lead in the soil from the Garden District area compared to the other areas where soil was collected. Reconstruction and renovations, from the devastation that Hurricane Katrina created, are evident of the lead in paint of older homes which now show the lead concentration in the soil. Lead is a lethal element if consumed or inhaled in high doses, which can damage key organs in our body, which can be deadly. Better awareness through social media, television, radio, doctors, studies, pamphlets, environmental agencies, and other forms to address the steps in protecting your family and home for a lead free environment.

Tests on the centrifugal flotation technique and its use in estimating the prevalence of Toxocara in soil samples from urban and suburban areas of Malaysia.

PubMed

Loh, A G; Israf, D A

1998-03-01

The influence of soil texture (silt, sand and laterite) and flotation solutions (saturated NaCl, sucrose, NaNO3, and ZnSO4) upon the recovery of Toxocara ova from seeded soil samples with the centrifugal flotation technique was investigated. Soil samples of different texture were artificially seeded with Toxocara spp. ova and subjected to a centrifugal flotation technique which used various flotation solutions. The results showed significant (P < 0.001) interactions between the soil types and the flotation solutions. The highest percentage of ova recovery was obtained with silty soil (34.9-100.8%) with saturated NaCl as the flotation solution (45.3-100.8%). A combination of washing of soil samples with 0.1% Tween 80, and flotation using saturated NaCl and a 30 min coverslip recovery period was used to study the prevalence of contamination of soil samples. Forty-six soil samples were collected from up to 24 public parks/playgrounds in urban areas of Petaling Jaya and suburban areas of Serdang. The prevalence of Toxocara species in the urban and suburban areas was 54.5% and 45.8% respectively.

Analysis of problems and failures in the measurement of soil-gas radon concentration.

PubMed

Neznal, Martin; Neznal, Matěj

2014-07-01

Long-term experience in the field of soil-gas radon concentration measurements allows to describe and explain the most frequent causes of failures, which can appear in practice when various types of measurement methods and soil-gas sampling techniques are used. The concept of minimal sampling depth, which depends on the volume of the soil-gas sample and on the soil properties, is shown in detail. Consideration of minimal sampling depth at the time of measurement planning allows to avoid the most common mistakes. The ways how to identify influencing parameters, how to avoid a dilution of soil-gas samples by the atmospheric air, as well as how to recognise inappropriate sampling methods are discussed. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Chemical Analysis Results for Potable Water from ISS Expeditions 21 to 25

NASA Technical Reports Server (NTRS)

Straub, John E., II; Plumlee, Debrah K.; Schultz, John R.; McCoy, J. Torin

2010-01-01

The Johnson Space Center Water and Food Analytical Laboratory (WAFAL) performed detailed ground-based analyses of archival water samples for verification of the chemical quality of the International Space Station (ISS) potable water supplies for Expeditions 21 to 25. Over a 14-month period, the Space Shuttle visited the ISS on five occasions to complete construction and deliver supplies. The onboard supplies of potable water available for consumption by the Expeditions 21 to 25 crews consisted of Russian ground-supplied potable water, Russian potable water regenerated from humidity condensate, and US potable water recovered from urine distillate and condensate. Chemical archival water samples that were collected with U.S. hardware during Expeditions 21 to 25 were returned on Shuttle flights STS-129 (ULF3), STS-130 (20A), STS-131 (19A), STS-132 (ULF4) and STS-133 (ULF5), as well as on Soyuz flights 19-22. This paper reports the analytical results for the returned archival water samples and evaluates their compliance with ISS water quality standards. The WAFAL also received and analyzed aliquots of some Russian potable water samples collected in-flight and pre-flight samples of Rodnik potable water delivered to the Station on the Russian Progress vehicle during Expeditions 21 to 25. These additional analytical results are also reported and discussed in this paper.

Rapid and sensitive determination of tellurium in soil and plant samples by sector-field inductively coupled plasma mass spectrometry.

PubMed

Yang, Guosheng; Zheng, Jian; Tagami, Keiko; Uchida, Shigeo

2013-11-15

In this work, we report a rapid and highly sensitive analytical method for the determination of tellurium in soil and plant samples using sector field inductively coupled plasma mass spectrometry (SF-ICP-MS). Soil and plant samples were digested using Aqua regia. After appropriate dilution, Te in soil and plant samples was directly analyzed without any separation and preconcentration. This simple sample preparation approach avoided to a maximum extent any contamination and loss of Te prior to the analysis. The developed analytical method was validated by the analysis of soil/sediment and plant reference materials. Satisfactory detection limits of 0.17 ng g(-1) for soil and 0.02 ng g(-1) for plant samples were achieved, which meant that the developed method was applicable to studying the soil-to-plant transfer factor of Te. Our work represents for the first time that data on the soil-to-plant transfer factor of Te were obtained for Japanese samples which can be used for the estimation of internal radiation dose of radioactive tellurium due to the Fukushima Daiichi Nuclear Power Plant accident. Copyright © 2013 Elsevier B.V. All rights reserved.

77 FR 67777 - National Oil and Hazardous Substance Pollution Contingency Plan; National Priorities List...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-11-14

... subsequent soil samples showed levels of metals at or below generic residential criteria or background values... 1994- 1996 and additional sampling between 1998 and 2007. Area A--Site Entrance: Soil boring samples... verification samples. Additional soil samples were collected from the same location as the previous collection...

Digital Archive Issues from the Perspective of an Earth Science Data Producer

NASA Technical Reports Server (NTRS)

Barkstrom, Bruce R.

2004-01-01

Contents include the following: Introduction. A Producer Perspective on Earth Science Data. Data Producers as Members of a Scientific Community. Some Unique Characteristics of Scientific Data. Spatial and Temporal Sampling for Earth (or Space) Science Data. The Influence of the Data Production System Architecture. The Spatial and Temporal Structures Underlying Earth Science Data. Earth Science Data File (or Relation) Schemas. Data Producer Configuration Management Complexities. The Topology of Earth Science Data Inventories. Some Thoughts on the User Perspective. Science Data User Communities. Spatial and Temporal Structure Needs of Different Users. User Spatial Objects. Data Search Services. Inventory Search. Parameter (Keyword) Search. Metadata Searches. Documentation Search. Secondary Index Search. Print Technology and Hypertext. Inter-Data Collection Configuration Management Issues. An Archive View. Producer Data Ingest and Production. User Data Searching and Distribution. Subsetting and Supersetting. Semantic Requirements for Data Interchange. Tentative Conclusions. An Object Oriented View of Archive Information Evolution. Scientific Data Archival Issues. A Perspective on the Future of Digital Archives for Scientific Data. References Index for this paper.

Anthropogenic impact on the presence of L. monocytogenes in soil, fruits, and vegetables.

PubMed

Szymczak, Barbara; Szymczak, Mariusz; Sawicki, Wojciech; Dąbrowski, Waldemar

2014-01-01

The aim of this study was to determine the prevalence of Listeria sp. and Listeria monocytogenes in soil samples with reference to type of fertilizers (natural and artificial) and distance from places intensively exploited by men, as well as to determine the relationship between the presence of L. monocytogenes in the soil and in fruits and vegetables. The examined 1,000 soil samples originated from 15 different areas, whilst 140 samples of fruits and 210 samples of vegetables were collected from those areas. L. monocytogenes was isolated only from 5.5 % of all soil samples coming exclusively from meadows intensively grazed by cattle (27.8 %) and areas near food processing plants (25 %) and wild animal forests (24 %). Listeria sp. and L. monocytogenes were not present on artificially fertilized areas and wastelands. L. monocytogenes was detected in 10 % of samples of strawberry, 15 % of potato samples, and 5 % of parsley samples. Our data indicate that Listeria spp. and particularly L. monocytogenes were found in the soil from (1) arable lands fertilized with manure, (2) pasture (the land fertilized with feces of domestic animals), and (3) forests (again, the land fertilized with feces of animals, not domestic but wild). The bacteria were not detected in the soil samples collected at (1) artificially fertilized arable lands and (2) wastelands (the lands that were not fertilized with manure or animal feces). Moreover, a correlation was determined in the presence of L. monocytogenes between soil samples and samples of the examined fruits and vegetables.

Evaluation of soil quality indicators in paddy soils under different crop rotation systems

NASA Astrophysics Data System (ADS)

Nadimi-Goki, Mandana; Bini, Claudio; Haefele, Stephan; Abooei, Monireh

2013-04-01

Evaluation of soil quality indicators in paddy soils under different crop rotation systems Soil quality, by definition, reflects the capacity to sustain plant and animal productivity, maintain or enhance water and air quality, and promote plant and animal health. Soil quality assessment is an essential issue in soil management for agriculture and natural resource protection. This study was conducted to detect the effects of four crop rotation systems (rice-rice-rice, soya-rice-rice, fallow-rice and pea-soya-rice) on soil quality indicators (soil moisture, porosity, bulk density, water-filled pore space, pH, extractable P, CEC, OC, OM, microbial respiration, active carbon) in paddy soils of Verona area, Northern Italy. Four adjacent plots which managed almost similarly, over five years were selected. Surface soil samples were collected from each four rotation systems in four times, during growing season. Each soil sample was a composite of sub-samples taken from 3 points within 350 m2 of agricultural land. A total of 48 samples were air-dried and passed through 2mm sieve, for some chemical, biological, and physical measurements. Statistical analysis was done using SPSS. Statistical results revealed that frequency distribution of most data was normal. The lowest CV% was related to pH. Analysis of variance (ANOVA) and comparison test showed that there are significant differences in soil quality indicators among crop rotation systems and sampling times. Results of multivariable regression analysis revealed that soil respiration had positively correlation coefficient with soil organic matter, soil moisture and cation exchange capacity. Overall results indicated that the rice rotation with legumes such as bean and soybean improved soil quality over a long time in comparison to rice-fallow rotation, and this is reflected in rice yield. Keywords: Soil quality, Crop Rotation System, Paddy Soils, Italy

FIELD-SCALE STUDIES: HOW DOES SOIL SAMPLE PRETREATMENT AFFECT REPRESENTATIVENESS ? (ABSTRACT)

EPA Science Inventory

Samples from field-scale studies are very heterogeneous and can contain large soil and rock particles. Oversize materials are often removed before chemical analysis of the soil samples because it is not practical to include these materials. Is the extracted sample representativ...

FIELD-SCALE STUDIES: HOW DOES SOIL SAMPLE PRETREATMENT AFFECT REPRESENTATIVENESS?

EPA Science Inventory

Samples from field-scale studies are very heterogeneous and can contain large soil and rock particles. Oversize materials are often removed before chemical analysis of the soil samples because it is not practical to include these materials. Is the extracted sample representativ...

Heavy metals and hydrocarbons contents in soils of urban areas of Yamal autonomous region (Russia)

NASA Astrophysics Data System (ADS)

Alekseev, Ivan; Abakumov, Evgeny; Shamilishvili, George

2016-04-01

This investigation is devoted to evaluation of heavy metals and hydrocarbons contents in soils of different functional localities within the Yamalo-Nenets autonomous region (YaNAR, North-Western Siberia, Russia). Geo-accumulation indices Igeo (Müller 1988) were calculated in order to assess soil contamination levels with heavy metals (Cu, Pb, Cd, Zn, Ni, As, Hg) in the studied settlements: Harsaim, Aksarka, Labytnangy, Harp and Salekhard. The degree of soil pollution was assessed according to seven contamination classes (Förstner et al. 1990) in order of increasing numerical value of the index. Cd's regional soil background concentrations of the Yamal peninsula (Moskovchenko 2010), Hg's Earth crust clarke (Greenwood & Earnshaw 2008) and concentrations of the rest trace elements in natural sandy soil from the Beliy island, YaNAR (Tomashunas & Abakumov, 2014) were used in calculations. In general terms, obtained Igeo values in all samples were under or slightly above the 0 level, indicating low to moderate pollution of the studied soils. However, considerable Igeo values of Zn, Pb and Ni were revealed in several samples, suggesting different soil pollution levels, namely: Zn Igeo in Harsaim soil sample of 2.22 - moderate polluted to highly polluted soil; Pb Igeo in Aksarka soil sample of 4.04 - highly polluted to extremely polluted soil; Ni Igeo in Harp soil sample of 4.34 - highly polluted to extremely polluted soil. Soil contamination level was additionally evaluated, comparing with the maximal permissible concentrations (MPCs) of the trace elements in soil (SANPIN 4266-87), established by the national legislation. Almost all samples exceeded the MPC for As in soils (2 mg•kg-1). Concentrations of Ni in several soil samples taken in Harp were 19 times higher than recommended level (20 mg•kg-1). Moderate excess of Zn, Pb and Cu MPCs was also noted. Data obtained will be used in further environmental researches and environmental management purposes in this key oil and gas exploration region. This study was supported by Russian president's grant for Young Doctors of Science № MD 3615-2015-4.

How iSamples (Internet of Samples in the Earth Sciences) Improves Sample and Data Stewardship in the Next Generation of Geoscientists

NASA Astrophysics Data System (ADS)

Hallett, B. W.; Dere, A. L. D.; Lehnert, K.; Carter, M.

2016-12-01

Vast numbers of physical samples are routinely collected by geoscientists to probe key scientific questions related to global climate change, biogeochemical cycles, magmatic processes, mantle dynamics, etc. Despite their value as irreplaceable records of nature the majority of these samples remain undiscoverable by the broader scientific community because they lack a digital presence or are not well-documented enough to facilitate their discovery and reuse for future scientific and educational use. The NSF EarthCube iSamples Research Coordination Network seeks to develop a unified approach across all Earth Science disciplines for the registration, description, identification, and citation of physical specimens in order to take advantage of the new opportunities that cyberinfrastructure offers. Even as consensus around best practices begins to emerge, such as the use of the International Geo Sample Number (IGSN), more work is needed to communicate these practices to investigators to encourage widespread adoption. Recognizing the importance of students and early career scientists in particular to transforming data and sample management practices, the iSamples Education and Training Working Group is developing training modules for sample collection, documentation, and management workflows. These training materials are made available to educators/research supervisors online at http://earthcube.org/group/isamples and can be modularized for supervisors to create a customized research workflow. This study details the design and development of several sample management tutorials, created by early career scientists and documented in collaboration with undergraduate research students in field and lab settings. Modules under development focus on rock outcrops, rock cores, soil cores, and coral samples, with an emphasis on sample management throughout the collection, analysis and archiving process. We invite others to share their sample management/registration workflows and to develop training modules. This educational approach, with evolving digital materials, can help prepare future scientists to perform research in a way that will contribute to EarthCube data integration and discovery.

Evaluation and characterization of anti-estrogenic and anti-androgenic activities in soil samples along the Second Songhua River, China.

PubMed

Li, Jian; Wang, Yafei; Kong, Dongdong; Wang, Jinsheng; Teng, Yanguo; Li, Na

2015-11-01

In the present study, re-combined estrogen receptor (ER) and androgen receptor (AR) gene yeast assays combined with a novel approach based on Monte Carlo simulation were used for evaluation and characterization of soil samples collected from Jilin along the Second Songhua River to assess their antagonist/agonist properties for ER and AR. The results showed that estrogenic activity only occurred in the soil samples collected in the agriculture area, but most soil samples showed anti-estrogenic activities, and the bioassay-derived 4-hydroxytamoxifen equivalents ranged from N.D. to 23.51 μg/g. Hydrophilic substance fractions were determined as potential contributors associated with anti-estrogenic activity in these soil samples. Moreover, none of the soil samples exhibited AR agonistic potency, whereas 54% of the soil samples exhibited AR antagonistic potency. The flutamide equivalents varied between N.D. and 178.05 μg/g. Based on Monte Carlo simulation-related mass balance analysis, the AR antagonistic activities were significantly correlated with the media polar and polar fractions. All of these results support that this novel calculation method can be adopted effectively to quantify and characterize the ER/AR agonists and antagonists of the soil samples, and these data could help provide useful information for future management and remediation efforts.

Soil and surface layer type affect non-rainfall water inputs

NASA Astrophysics Data System (ADS)

Agam, Nurit; Berliner, Pedro; Jiang, Anxia

2017-04-01

Non-rainfall water inputs (NRWIs), which include fog deposition, dew formation, and direct water vapor adsorption by the soil, play a vital role in arid and semiarid regions. Environmental conditions, namely radiation, air temperature, air humidity, and wind speed, largely affect the water cycle driven by NRWIs. The substrate type (soil type and the existence/absence of a crust layer) may as well play a major role. Our objective was to quantify the effects of soil type (loess vs. sand) and surface layer (bare vs. crusted) on the gain and posterior evaporation of NRWIs in the Negev Highlands throughout the dry summer season. Four undisturbed soil samples (20 cm diameter and 50 cm depth) were excavated and simultaneously introduced into a PVC tube. Two samples were obtained in the Negev's Boker plain (loess soil) and two in the Nizzana sand dunes in the Western Negev. On one sample from each site the crust was removed while on the remaining one the natural crust was left in place. The samples were brought to the research site at the Jacob Bluestein Institutes for Desert Research, Ben-Gurion University of the Negev, Israel (31˚08' N, 34˚53' E, 400 meter above the sea level) where they were exposed to the same environmental conditions. The four samples in their PVC tubes were placed on top of scales and the samples mass was continuously monitored. Soil temperatures were monitored at depths of 1, 2, 3, 5 and10 cm in each microlysimeter (ML) using Copper-Constantan thermocouples. The results of particle size distribution indicated that the crust of the loess soil is probably a physical crust, i.e., a crust that forms due to raindroplets impact; while the crust on the sand soil is biological. On most days, the loess soils adsorbed more water than their corresponding sand soil samples. For both soils, the samples for which the crust was removed adsorbed more water than the samples for which it was intact. The difference in daily water adsorption amount between crusted and non-crusted sandy soils often exceeded that between crusted and non-crusted loess soils.

Investigating the Relationship Between Soil Water Mobility and Stable Isotope Composition with Implications for the Ecohydrologic Separation Hypothesis

NASA Astrophysics Data System (ADS)

Shuler, J.; McNamara, J. P.; Benner, S. G.; Kohn, M. J.; Evans, S.

2017-12-01

The ecohydrologic separation (ES) hypothesis states that streams and plants return different soil water compartments to the atmosphere and that these compartments bear distinct isotopic compositions that can be used to infer soil water mobility. Recent studies have found isotopic evidence for ES in a variety of ecosystems, though interpretations of these data vary. ES investigations frequently suffer from low sampling frequencies as well as incomplete or missing soil moisture and matric potential data to support assumptions of soil water mobility. We sampled bulk soil water every 2-3 weeks in the upper 1 m of a hillslope profile from May 2016 to July 2017 in a semi-arid watershed outside Boise, ID. Twig samples of three plant species were also collected concurrently. Plant and soil water samples extracted via cryogenic vacuum distillation were analyzed for δ2H and δ18O composition. Soil moisture and soil matric potential sensors were installed at five and four depths in the profile, respectively. Shallow bulk soil water was progressively enriched in both isotopes over the growing season and plotted along a soil evaporation line in a plot of δ2H versus δ18O. Plant water during the growing season plotted below both the Local Meteoric Water Line and soil evaporation line. Plant water isotopic composition could not be traced to any source sampled in this study. Additionally, soil moisture and matric potential data revealed that soils were well-drained and that mobile soil water was unavailable throughout most of the growing season at the depths sampled. Soil water isotopic composition alone failed to predict mobility as observed in soil moisture and matric potential data. These results underscore the need for standard hydrologic definitions for the mobile and immobile compartments of soil water in future studies of the ES hypothesis and ecohydrologic processes in general.

Evaluation of sample preservation methods for space mission

NASA Technical Reports Server (NTRS)

Schubert, W.; Rohatgi, N.; Kazarians, G.

2002-01-01

For interplanetary spacecraft that will travel to destinations where future life detection experiments may be conducted or samples are to be returned to earth, we should archive and preserve relevant samples from the spacecraft and cleanrooms for evaluation at a future date.

Real-time detection of BRAF V600E mutation from archival hairy cell leukemia FFPE tissue by nanopore sequencing.

PubMed

Vacca, Davide; Cancila, Valeria; Gulino, Alessandro; Lo Bosco, Giosuè; Belmonte, Beatrice; Di Napoli, Arianna; Florena, Ada Maria; Tripodo, Claudio; Arancio, Walter

2018-02-01

The MinION is a miniaturized high-throughput next generation sequencing platform of novel conception. The use of nucleic acids derived from formalin-fixed paraffin-embedded samples is highly desirable, but their adoption for molecular assays is hurdled by the high degree of fragmentation and by the chemical-induced mutations stemming from the fixation protocols. In order to investigate the suitability of MinION sequencing on formalin-fixed paraffin-embedded samples, the presence and frequency of BRAF c.1799T > A mutation was investigated in two archival tissue specimens of Hairy cell leukemia and Hairy cell leukemia Variant. Despite the poor quality of the starting DNA, BRAF mutation was successfully detected in the Hairy cell leukemia sample with around 50% of the reads obtained within 2 h of the sequencing start. Notably, the mutational burden of the Hairy cell leukemia sample as derived from nanopore sequencing proved to be comparable to a sensitive method for the detection of point mutations, namely the Digital PCR, using a validated assay. Nanopore sequencing can be adopted for targeted sequencing of genetic lesions on critical DNA samples such as those extracted from archival routine formalin-fixed paraffin-embedded samples. This result let speculating about the possibility that the nanopore sequencing could be trustably adopted for the real-time targeted sequencing of genetic lesions. Our report opens the window for the adoption of nanopore sequencing in molecular pathology for research and diagnostics.

Fine Increment Soil Collector (FISC): A new device to support high resolution soil and sediment sampling for agri-environmental assessments

NASA Astrophysics Data System (ADS)

Mabit, Lionel; Meusburger, Katrin; Iurian, Andra-Rada; Owens, Philip N.; Toloza, Arsenio; Alewell, Christine

2014-05-01

Soil and sediment related research for terrestrial agri-environmental assessments requires accurate depth incremental sampling of soil and exposed sediment profiles. Existing coring equipment does not allow collecting soil/sediment increments at millimetre resolution. Therefore, the authors have designed an economic, portable, hand-operated surface soil/sediment sampler - the Fine Increment Soil Collector (FISC) - which allows extensive control of soil/sediment sampling process and easy recovery of the material collected by using a simple screw-thread extraction system. In comparison with existing sampling tools, the FISC has the following advantages and benefits: (i) it permits sampling of soil/sediment samples at the top of the profile; (ii) it is easy to adjust so as to collect soil/sediment at mm resolution; (iii) it is simple to operate by one single person; (iv) incremental samples can be performed in the field or at the laboratory; (v) it permits precise evaluation of bulk density at millimetre vertical resolution; and (vi) sample size can be tailored to analytical requirements. To illustrate the usefulness of the FISC in sampling soil and sediments for 7Be - a well-known cosmogenic soil tracer and fingerprinting tool - measurements, the sampler was tested in a forested soil located 45 km southeast of Vienna in Austria. The fine resolution increments of 7Be (i.e. 2.5 mm) affects directly the measurement of the 7Be total inventory but above all impacts the shape of the 7Be exponential profile which is needed to assess soil movement rates. The FISC can improve the determination of the depth distributions of other Fallout Radionuclides (FRN) - such as 137Cs, 210Pbexand239+240Pu - which are frequently used for soil erosion and sediment transport studies and/or sediment fingerprinting. Such a device also offers great potential to investigate FRN depth distributions associated with fallout events such as that associated with nuclear emergencies. Furthermore, prior to remediation activities - such as topsoil removal - in contaminated soils and sediments (e.g. by heavy metals, pesticides or nuclear power plant accident releases), basic environmental assessment often requires the determination of the extent and the depth penetration of the different contaminants, precision that can be provided by using the FISC.

Visual assessment of soil structure quality in an agroextractivist system in Southeastern Amazonia

NASA Astrophysics Data System (ADS)

Fernanda Simões da Silva, Laura; Stuchi Boschi, Raquel; Ortega Gomes, Matheus; Cooper, Miguel

2016-04-01

Soil structure is considered a key factor in the functioning of soil, affecting its ability to support plant and animal life, and moderate environmental quality. Numerous methods are available to evaluate soil structure based on physical, chemical and biological indicators. Among the physical indicators, the attributes most commonly used are soil bulk density, porosity, soil resistance to penetration, tensile strength of aggregates, soil water infiltration, and available water. However, these methods are expensive and generally time costly for sampling and laboratorial procedures. Recently, evaluations using qualitative and semi-quantitative indicators of soil structure quality have gained importance. Among these methods, the method known as Visual Evaluation of Soil Structure (VESS) (Ball et al., 2007; Guimarães et al., 2011) can supply this necessity in temperate and tropical regions. The study area is located in the Piranheira Praialta Agroextrativist Settlement Project in the county of Nova Ipixuna, Pará, Brazil. Two toposequences were chosen, one under native forest and the other under pasture. Pits were opened in different landscape positions (upslope, midslope and downslope) for soil morphological, micromorphological and physical characterization. The use of the soil visual evaluation method (SVE) consisted in collecting an undisturbed soil sample of approximately 25 cm in length, 20 cm in width and 10 cm in depth. 12 soil samples were taken for each land use. The samples were manually fragmented, respecting the fracture planes between the aggregates. The SVE was done comparing the fragmented sample with a visual chart and scores were given to the soil structure. The categories that define the soil structure quality (Qe) vary from 1 to 5. Lower scores mean better soil structure. The final score calculation was done using the classification key of Ball et al. (2007) adapted by Guimarães (2011). A change in soil structure was observed between forest and pasture. The presence of layers of different depths, and size and shape of aggregates resulted in a lower Qe in the forest soils (Qe= 2,04 ±0,4), followed by the pasture (Qe= 3,09 ± 1,3). These results indicate certain degradation in the soil structure in the pasture. The variability of the soil structure in the forest samples was lower. The pasture samples presented a worse soil structure when compared to the forest, although their Qe values can be considered good.

Reconnaissance soil geochemistry at the Riverton Uranium Mill Tailings Remedial Action Site, Fremont County, Wyoming

USGS Publications Warehouse

Smith, David B.; Sweat, Michael J.

2012-01-01

Soil samples were collected and chemically analyzed from the Riverton Uranium Mill Tailings Remedial Action Site, which lies within the Wind River Indian Reservation in Fremont County, Wyoming. Nineteen soil samples from a depth of 0 to 5 centimeters were collected in August 2011 from the site. The samples were sieved to less than 2 millimeters and analyzed for 44 major and trace elements following a near-total multi-acid extraction. Soil pH was also determined. The geochemical data were compared to a background dataset consisting of 160 soil samples previously collected from the same depth throughout the State of Wyoming as part of another ongoing study by the U.S. Geological Survey. Risk from potentially toxic elements in soil from the site to biologic receptors and humans was estimated by comparing the concentration of these elements with soil screening values established by the U.S. Environmental Protection Agency. All 19 samples exceeded the carcinogenic human health screening level for arsenic in residential soils of 0.39 milligrams per kilogram (mg/kg), which represents a one-in-one-million cancer risk (median arsenic concentration in the study area is 2.7 mg/kg). All 19 samples also exceeded the lead and vanadium screening levels for birds. Eighteen of the 19 samples exceeded the manganese screening level for plants, 13 of the 19 samples exceeded the antimony screening level for mammals, and 10 of 19 samples exceeded the zinc screening level for birds. However, these exceedances are also found in soils at most locations in the Wyoming Statewide soil database, and elevated concentrations alone are not necessarily cause for alarm. Uranium and thorium, two other elements of environmental concern, are elevated in soils at the site as compared to the Wyoming dataset, but no human or ecological soil screening levels have been established for these elements.

Rapid fusion method for the determination of Pu, Np, and Am in large soil samples

DOE PAGES

Maxwell, Sherrod L.; Culligan, Brian; Hutchison, Jay B.; ...

2015-02-14

A new rapid sodium hydroxide fusion method for the preparation of 10-20 g soil samples has been developed by the Savannah River National Laboratory (SRNL). The method enables lower detection limits for plutonium, neptunium, and americium in environmental soil samples. The method also significantly reduces sample processing time and acid fume generation compared to traditional soil digestion techniques using hydrofluoric acid. Ten gram soil aliquots can be ashed and fused using the new method in 1-2 hours, completely dissolving samples, including refractory particles. Pu, Np and Am are separated using stacked 2mL cartridges of TEVA and DGA Resin and measuredmore » using alpha spectrometry. The method can be adapted for measurement by inductively-coupled plasma mass spectrometry (ICP-MS). Two 10 g soil aliquots of fused soil may be combined prior to chromatographic separations to further improve detection limits. Total sample preparation time, including chromatographic separations and alpha spectrometry source preparation, is less than 8 hours.« less

Long-term data archiving

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moore, David Steven

2009-01-01

Long term data archiving has much value for chemists, not only to retain access to research and product development records, but also to enable new developments and new discoveries. There are some recent regulatory requirements (e.g., FDA 21 CFR Part 11), but good science and good business both benefit regardless. A particular example of the benefits of and need for long term data archiving is the management of data from spectroscopic laboratory instruments. The sheer amount of spectroscopic data is increasing at a scary rate, and the pressures to archive come from the expense to create the data (or recreatemore » it if it is lost) as well as its high information content. The goal of long-term data archiving is to save and organize instrument data files as well as any needed meta data (such as sample ID, LIMS information, operator, date, time, instrument conditions, sample type, excitation details, environmental parameters, etc.). This editorial explores the issues involved in long-term data archiving using the example of Raman spectral databases. There are at present several such databases, including common data format libraries and proprietary libraries. However, such databases and libraries should ultimately satisfy stringent criteria for long term data archiving, including readability for long times into the future, robustness to changes in computer hardware and operating systems, and use of public domain data formats. The latter criterion implies the data format should be platform independent and the tools to create the data format should be easily and publicly obtainable or developable. Several examples of attempts at spectral libraries exist, such as the ASTM ANDI format, and the JCAMP-DX format. On the other hand, proprietary library spectra can be exchanged and manipulated using proprietary tools. As the above examples have deficiencies according to the three long term data archiving criteria, Extensible Markup Language (XML; a product of the World Wide Web Consortium, an independent standards body) as a new data interchange tool is being investigated and implemented. In order to facilitate data archiving, Raman data needs calibration as well as some other kinds of data treatment. Figure 1 illustrates schematically the present situation for Raman data calibration in the world-wide Raman spectroscopy community, and presents some of the terminology used.« less

REPRESENTATIVE SAMPLING AND ANALYSIS OF HETEROGENEOUS SOILS

EPA Science Inventory

Standard sampling and analysis methods for hazardous substances in contaminated soils currently are available and routinely employed. Standard methods inherently assume a homogeneous soil matrix and contaminant distribution; therefore only small sample quantities typically are p...

Evaluation and characterization of thyroid-disrupting activities in soil samples along the Second Songhua River, China.

PubMed

Kong, Dongdong; Wang, Yafei; Wang, Jinsheng; Teng, Yanguo; Li, Na; Li, Jian

2016-11-01

In this study, a recombinant thyroid receptor (TR) gene yeast assay combined with Monte Carlo simulation were used to evaluate and characterize soil samples collected from Jilin (China) along the Second Songhua River, for their ant/agonist effect on TR. No TR agonistic activity was found in soils, but many soil samples exhibited TR antagonistic activities, and the bioassay-derived amiodarone hydrochloride equivalents, which was calculated based on Monte Carlo simulation, ranged from not detected (N.D.) to 35.5μg/g. Hydrophilic substance fractions were determined to be the contributors to TR antagonistic activity in these soil samples. Our results indicate that the novel calculation method is effective for the quantification and characterization of TR antagonists in soil samples, and these data could provide useful information for future management and remediation efforts for contaminated soils. Copyright © 2016 Elsevier Inc. All rights reserved.

High Quality Genomic Copy Number Data from Archival Formalin-Fixed Paraffin-Embedded Leiomyosarcoma: Optimisation of Universal Linkage System Labelling

PubMed Central

Salawu, Abdulazeez; Ul-Hassan, Aliya; Hammond, David; Fernando, Malee; Reed, Malcolm; Sisley, Karen

2012-01-01

Most soft tissue sarcomas are characterized by genetic instability and frequent genomic copy number aberrations that are not subtype-specific. Oligonucleotide microarray-based Comparative Genomic Hybridisation (array CGH) is an important technique used to map genome-wide copy number aberrations, but the traditional requirement for high-quality DNA typically obtained from fresh tissue has limited its use in sarcomas. Although large archives of Formalin-fixed Paraffin-embedded (FFPE) tumour samples are available for research, the degradative effects of formalin on DNA from these tissues has made labelling and analysis by array CGH technically challenging. The Universal Linkage System (ULS) may be used for a one-step chemical labelling of such degraded DNA. We have optimised the ULS labelling protocol to perform aCGH on archived FFPE leiomyosarcoma tissues using the 180k Agilent platform. Preservation age of samples ranged from a few months to seventeen years and the DNA showed a wide range of degradation (when visualised on agarose gels). Consistently high DNA labelling efficiency and low microarray probe-to-probe variation (as measured by the derivative log ratio spread) was seen. Comparison of paired fresh and FFPE samples from identical tumours showed good correlation of CNAs detected. Furthermore, the ability to macro-dissect FFPE samples permitted the detection of CNAs that were masked in fresh tissue. Aberrations were visually confirmed using Fluorescence in situ Hybridisation. These results suggest that archival FFPE tissue, with its relative abundance and attendant clinical data may be used for effective mapping for genomic copy number aberrations in such rare tumours as leiomyosarcoma and potentially unravel clues to tumour origins, progression and ultimately, targeted treatment. PMID:23209738

The influence of soil organic matter chemistry and site/soil properties in predicting the decomposability of tundra soils

NASA Astrophysics Data System (ADS)

Matamala, R.; Jastrow, J. D.; Fan, Z.; Liang, C.; Calderon, F.; Michaelson, G.; Mishra, U.; Ping, C. L.

2017-12-01

With the increase in high latitude warming, there is a need to better understand the potential vulnerability of soil organic matter (SOM) stored in Arctic regions. In this study, we used mid infrared spectroscopy (MidIR) to determine the influence of soil chemistry and site properties in the short-term mineralization potential of SOM stored in tundra soils. Soils from the active and permafrost layers were collected from four tundra sites on the Coastal Plain, and Arctic Foothills of the North Slope of Alaska and were incubated for 60 days at a range of temperatures. Site and soil properties including acidic versus non-acidic tundra, lowland versus upland areas, total soil organic carbon (TOC) and total nitrogen (TN) concentrations, 60-day carbon mineralization potential (CMP), MidIR spectra and the chemical composition of the SOM stored in these soils were determined. Partial least squares (PLS) models for CMP versus MidIR spectra were produced upon splitting the dataset into site and soil properties categories. We found that SOM composition determined by MidIR spectroscopy was most effective in predicting CMP for tundra soils and it was most relevant for the active-layer mineral and upper permafrost soil horizons and/or soils with C concentrations of 10% or lower. Analysis of the factor loadings and standardized beta coefficients from the CMP PLS models indicated that spectral bands associated with clay contents, phenolic OH, aliphatic, silicates, carboxylic acids, and polysaccharides were influential for lower TOC soils, but these bands were less important for higher TOC soils. High TOC soils were influenced by a combination of other factors. Our results suggest that different factors affect the short-term CMP of SOM in tundra soils depending on the amount of TOC present. We show MidIR as a powerful tool for quickly and reasonably estimating the short-term CMP of tundra soils. Widespread application of MidIR measurements to already collected and archived tundra region soils could provide a quick and reliable assessment of the CMP of these soils, reduce the need for incubation studies, and contribute to upscaling and model benchmarking of SOM mineralization of tundra soils.

Soil pollution in the railway junction Niš (Serbia) and possibility of bioremediation of hydrocarbon-contaminated soil

NASA Astrophysics Data System (ADS)

Jovanovic, Larisa; Aleksic, Gorica; Radosavljevic, Milan; Onjia, Antonije

2015-04-01

Mineral oil leaking from vehicles or released during accidents is an important source of soil and ground water pollution. In the railway junction Niš (Serbia) total 90 soil samples polluted with mineral oil derivatives were investigated. Field work at the railway Niš sites included the opening of soil profiles and soil sampling. The aim of this work is the determination of petroleum hydrocarbons concentration in the soil samples and the investigation of the bioremediation technique for treatment heavily contaminated soil. For determination of petroleum hydrocarbons in the soil samples method of gas-chromatography was carried out. On the basis of measured concentrations of petroleum hydrocarbons in the soil it can be concluded that: Obtained concentrations of petroleum hydrocarbons in 60% of soil samples exceed the permissible values (5000 mg/kg). The heavily contaminated soils, according the Regulation on the program of systematic monitoring of soil quality indicators for assessing the risk of soil degradation and methodology for development of remediation programs, Annex 3 (Official Gazette of RS, No.88 / 2010), must be treated using some of remediation technologies. Between many types of phytoremediation of soil contaminated with mineral oils and their derivatives, the most suitable are phytovolatalisation and phytostimulation. During phytovolatalisation plants (poplar, willow, aspen, sorgum, and rye) absorb organic pollutants through the root, and then transported them to the leaves where the reduced pollutants are released into the atmosphere. In the case of phytostimulation plants (mulberry, apple, rye, Bermuda) secrete from the roots enzymes that stimulates the growth of bacteria in the soil. The increase in microbial activity in soil promotes the degradation of pollutants. Bioremediation is performed by composting the contaminated soil with addition of composting materials (straw, manure, sawdust, and shavings), moisture components, oligotrophs and heterotrophs bacteria.

Distribution and Diversity of Soil Microfauna from East Antarctica: Assessing the Link between Biotic and Abiotic Factors

PubMed Central

Velasco-Castrillón, Alejandro; Schultz, Mark B.; Colombo, Federica; Gibson, John A. E.; Davies, Kerrie A.; Austin, Andrew D.; Stevens, Mark I.

2014-01-01

Terrestrial life in Antarctica has been described as some of the simplest on the planet, and mainly confined to soil microfaunal communities. Studies have suggested that the lack of diversity is due to extreme environmental conditions and thought to be driven by abiotic factors. In this study we investigated soil microfauna composition, abundance, and distribution in East Antarctica, and assessed correlations with soil geochemistry and environmental variables. We examined 109 soil samples from a wide range of ice-free habitats, spanning 2000 km from Framnes Mountains to Bailey Peninsula. Microfauna across all samples were patchily distributed, from complete absence of invertebrates to over 1600 specimens/gram of dry weight of soil (gdw), with highest microfauna abundance observed in samples with visible vegetation. Bdelloid rotifers were on average the most widespread found in 87% of sampled sites and the most abundant (44 specimens/gdw). Tardigrades occurred in 57% of the sampled sites with an abundance of 12 specimens/gdw. Nematodes occurred in 71% of samples with a total abundance of 3 specimens/gdw. Ciliates and mites were rarely found in soil samples, with an average abundance of 1.3 and 0.04 specimens/gdw, respectively. We found that microfaunal composition and abundance were mostly correlated with the soil geochemical parameters; phosphorus, NO3 − and salinity, and likely to be the result of soil properties and historic landscape formation and alteration, rather than the geographic region they were sampled from. Studies focusing on Antarctic biodiversity must take into account soil geochemical and environmental factors that influence population and species heterogeneity. PMID:24498126

Distribution of pesticide residues in soil and uncertainty of sampling.

PubMed

Suszter, Gabriela K; Ambrus, Árpád

2017-08-03

Pesticide residues were determined in about 120 soil cores taken randomly from the top 15 cm layer of two sunflower fields about 30 days after preemergence herbicide treatments. Samples were extracted with acetone-ethyl acetate mixture and the residues were determined with GC-TSD. Residues of dimethenamid, pendimethalin, and prometryn ranged from 0.005 to 2.97 mg/kg. Their relative standard deviations (CV) were between 0.66 and 1.13. The relative frequency distributions of residues in soil cores were very similar to those observed in root and tuber vegetables grown in pesticide treated soils. Based on all available information, a typical CV of 1.00 was estimated for pesticide residues in primary soil samples (soil cores). The corresponding expectable relative uncertainty of sampling is 20% when composite samples of size 25 are taken. To obtain a reliable estimate of the average residues in the top 15 cm layer of soil of a field up to 8 independent replicate random samples should be taken. To obtain better estimate of the actual residue level of the sampled filed would be marginal if larger number of samples were taken.

[Biodegradation of landfill leachate in soil].

PubMed

Fu, Mei-yun; Zhou, Li-xiang

2007-01-01

With aerobic and anaerobic incubation tests, this paper studied the biodegradation of three kind landfill leachates in acidic and calcareous soils. The leachates were collected from a landfill just receiving refuse (fresh sample) and the landfills having received refuse for 4-5 years (Tianjingwa sample) and 12 years (Shuige sample). The results showed that in the first seven days of incubation, these three landfill leachates degraded more quickly. Under aerobic condition, the apparent degradation rate of fresh sample, Tianjingwa sample and Shuige sample was 88.9%, 60.5% and 25.0% in acidic soil, and 96.6%, 80.4%, and 65.0% in calcareous soil, respectively. Seven days after, a lower degradation rate was observed. In same test soils, the shorter the landfilling age, the higher apparent degradation rate of the leachates was. Similar results were obtained under anaerobic condition, but the degradation rates were lower. The degradation of test landfill leachates fitted first-order kinetics model well, with a half-life of 12-16 days for fresh sample, and 20-30 days for Tianjingwa and Shuige samples. Once the leachates penetrated into soil, their degradation quickened greatly, suggesting that soil treatment of landfill leachate could have definite efficacy.

[Distribution Characteristics of Heavy Metals in Environmental Samples Around Electroplating Factories and the Health Risk Assessment].

PubMed

Guo, Peng-ran; Lei, Yong-qian; Zhou, Qiao-li; Wang, Chang; Pan, Jia-chuan

2015-09-01

This study aimed to investigate the pollution degree and human health risk of heavy metals in soil and air samples around electroplating factories. Soil, air and waste gas samples were collected to measure 8 heavy metals (As, Cd, Cr, Cu, Hg, Ni, Pb and Zn) in two electroplating factories, located in Baiyun district of Guangzhou city. Geoaccumulation index and USEPA Risk Assessment Guidance for Superfund (RAGS) were respectively carried out. Results showed that concentrations of Hg and Pb in waste gas and Cr in air samples were higher than limits of the corresponding quality standards, and concentrations of Cd, Hg and Zn in soil samples reached the moderate pollution level. The HQ and HI of exposure by heavy metals in air and soil samples were both lower than 1, indicating that there was no non-carcinogen risk. CRAs and CRCr in soil samples were beyond the maximum acceptable level of carcinogen risk (10(-4)), and the contribution rate of CRCr to TCR was over 81%. CRCr, CRNi and TCR in air samples were in range of 10(-6) - 10(-4), indicating there was possibly carcinogen risk but was acceptable risk. CR values for children were higher than adults in soils, but were higher for adults in air samples. Correlation analysis revealed that concentrations of heavy metals in soils were significantly correlated with these in waste gas samples, and PCA data showed pollution sources of Cd, Hg and Zn in soils were different from other metals.

Pesticides in soils and ground water in selected irrigated agricultural areas near Havre, Ronan, and Huntley, Montana

USGS Publications Warehouse

Clark, D.W.

1990-01-01

Three areas in Montana representing a range of agricultural practices and applied pesticides, were studied to document whether agricultural pesticides are being transported into the soil and shallow groundwater in irrigated areas. Analytical scans for triazine herbicides, organic-acid herbicides, and carbamate insecticides were performed on soil and shallow groundwater samples. The results indicate pesticide residue in both types of samples. The concentrations of pesticides in the groundwater were less than Federal health-advisory limits. At the Havre Agricultural Experiment Station, eight wells were installed at two sites. All four soil samples and two of four water samples collected after application of pesticides contained detectable concentrations of atrazine or dicamba. In an area where seed potatoes are grown near Ronan, eight wells were installed at two sites. Pesticides were not detected after initial application of pesticides and irrigation water. The site was resampled after irrigation water was reapplied, and aldicarb metabolities were detected in four of five soil samples and one of five water samples. At the Huntley Agricultural Experiment Station, five wells were installed in a no-tillage corn field where atrazine was applied in 1987. Soil and water samples were collected in June and July 1988; pesticides were not detected in any samples. Results indicate residue of two pesticides in soil samples and three soluble pesticides in groundwater samples. Therefore, irrigated agricultural areas in Montana might be susceptible to transport of soluble pesticides through permeable soil to the shallow groundwater system. (USGS)

Soil Gas Sample Handling: Evaluation of Water Removal and Sample Ganging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fritz, Brad G.; Abrecht, David G.; Hayes, James C.

2016-10-31

Soil gas sampling is currently conducted in support of Nuclear Test Ban treaty verification. Soil gas samples are collected and analyzed for isotopes of interest. Some issues that can impact sampling and analysis of these samples are excess moisture and sample processing time. Here we discuss three potential improvements to the current sampling protocol; a desiccant for water removal, use of molecular sieve to remove CO 2 from the sample during collection, and a ganging manifold to allow composite analysis of multiple samples.

Microbial soil community analyses for forensic science: Application to a blind test.

PubMed

Demanèche, Sandrine; Schauser, Leif; Dawson, Lorna; Franqueville, Laure; Simonet, Pascal

2017-01-01

Soil complexity, heterogeneity and transferability make it valuable in forensic investigations to help obtain clues as to the origin of an unknown sample, or to compare samples from a suspect or object with samples collected at a crime scene. In a few countries, soil analysis is used in matters from site verification to estimates of time after death. However, up to date the application or use of soil information in criminal investigations has been limited. In particular, comparing bacterial communities in soil samples could be a useful tool for forensic science. To evaluate the relevance of this approach, a blind test was performed to determine the origin of two questioned samples (one from the mock crime scene and the other from a 50:50 mixture of the crime scene and the alibi site) compared to three control samples (soil samples from the crime scene, from a context site 25m away from the crime scene and from the alibi site which was the suspect's home). Two biological methods were used, Ribosomal Intergenic Spacer Analysis (RISA), and 16S rRNA gene sequencing with Illumina Miseq, to evaluate the discriminating power of soil bacterial communities. Both techniques discriminated well between soils from a single source, but a combination of both techniques was necessary to show that the origin was a mixture of soils. This study illustrates the potential of applying microbial ecology methodologies in soil as an evaluative forensic tool. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Dry heat effects on survival of indigenous soil particle microflora and particle viability studies of Kennedy Space Center soil

NASA Technical Reports Server (NTRS)

Ruschmeyer, O. R.; Pflug, I. J.; Gove, R.; Heisserer, Y.

1975-01-01

Research efforts were concentrated on attempts to obtain data concerning the dry heat resistance of particle microflora in Kennedy Space Center soil samples. The in situ dry heat resistance profiles at selected temperatures for the aggregate microflora on soil particles of certain size ranges were determined. Viability profiles of older soil samples were compared with more recently stored soil samples. The effect of increased particle numbers on viability profiles after dry heat treatment was investigated. These soil particle viability data for various temperatures and times provide information on the soil microflora response to heat treatment and are useful in making selections for spacecraft sterilization cycles.

Comparison of soil sampling and analytical methods for asbestos at the Sumas Mountain Asbestos Site-Working towards a toolbox for better assessment.

PubMed

Wroble, Julie; Frederick, Timothy; Frame, Alicia; Vallero, Daniel

2017-01-01

Established soil sampling methods for asbestos are inadequate to support risk assessment and risk-based decision making at Superfund sites due to difficulties in detecting asbestos at low concentrations and difficulty in extrapolating soil concentrations to air concentrations. Environmental Protection Agency (EPA)'s Office of Land and Emergency Management (OLEM) currently recommends the rigorous process of Activity Based Sampling (ABS) to characterize site exposures. The purpose of this study was to compare three soil analytical methods and two soil sampling methods to determine whether one method, or combination of methods, would yield more reliable soil asbestos data than other methods. Samples were collected using both traditional discrete ("grab") samples and incremental sampling methodology (ISM). Analyses were conducted using polarized light microscopy (PLM), transmission electron microscopy (TEM) methods or a combination of these two methods. Data show that the fluidized bed asbestos segregator (FBAS) followed by TEM analysis could detect asbestos at locations that were not detected using other analytical methods; however, this method exhibited high relative standard deviations, indicating the results may be more variable than other soil asbestos methods. The comparison of samples collected using ISM versus discrete techniques for asbestos resulted in no clear conclusions regarding preferred sampling method. However, analytical results for metals clearly showed that measured concentrations in ISM samples were less variable than discrete samples.

Comparison of soil sampling and analytical methods for asbestos at the Sumas Mountain Asbestos Site—Working towards a toolbox for better assessment

PubMed Central

2017-01-01

Established soil sampling methods for asbestos are inadequate to support risk assessment and risk-based decision making at Superfund sites due to difficulties in detecting asbestos at low concentrations and difficulty in extrapolating soil concentrations to air concentrations. Environmental Protection Agency (EPA)’s Office of Land and Emergency Management (OLEM) currently recommends the rigorous process of Activity Based Sampling (ABS) to characterize site exposures. The purpose of this study was to compare three soil analytical methods and two soil sampling methods to determine whether one method, or combination of methods, would yield more reliable soil asbestos data than other methods. Samples were collected using both traditional discrete (“grab”) samples and incremental sampling methodology (ISM). Analyses were conducted using polarized light microscopy (PLM), transmission electron microscopy (TEM) methods or a combination of these two methods. Data show that the fluidized bed asbestos segregator (FBAS) followed by TEM analysis could detect asbestos at locations that were not detected using other analytical methods; however, this method exhibited high relative standard deviations, indicating the results may be more variable than other soil asbestos methods. The comparison of samples collected using ISM versus discrete techniques for asbestos resulted in no clear conclusions regarding preferred sampling method. However, analytical results for metals clearly showed that measured concentrations in ISM samples were less variable than discrete samples. PMID:28759607

Coupling Meteorology, Metal Concentrations, and Pb Isotopes for Source Attribution in Archived Precipitation Samples

EPA Science Inventory

A technique that couples lead (Pb) isotopes and multi-element concentrations with meteorological analysis was used to assess source contributions to precipitation samples at the Bondville, Illinois USA National Trends Network (NTN) site. Precipitation samples collected over a 16 ...

[Development of an analyzing system for soil parameters based on NIR spectroscopy].

PubMed

Zheng, Li-Hua; Li, Min-Zan; Sun, Hong

2009-10-01

A rapid estimation system for soil parameters based on spectral analysis was developed by using object-oriented (OO) technology. A class of SOIL was designed. The instance of the SOIL class is the object of the soil samples with the particular type, specific physical properties and spectral characteristics. Through extracting the effective information from the modeling spectral data of soil object, a map model was established between the soil parameters and its spectral data, while it was possible to save the mapping model parameters in the database of the model. When forecasting the content of any soil parameter, the corresponding prediction model of this parameter can be selected with the same soil type and the similar soil physical properties of objects. And after the object of target soil samples was carried into the prediction model and processed by the system, the accurate forecasting content of the target soil samples could be obtained. The system includes modules such as file operations, spectra pretreatment, sample analysis, calibrating and validating, and samples content forecasting. The system was designed to run out of equipment. The parameters and spectral data files (*.xls) of the known soil samples can be input into the system. Due to various data pretreatment being selected according to the concrete conditions, the results of predicting content will appear in the terminal and the forecasting model can be stored in the model database. The system reads the predicting models and their parameters are saved in the model database from the module interface, and then the data of the tested samples are transferred into the selected model. Finally the content of soil parameters can be predicted by the developed system. The system was programmed with Visual C++6.0 and Matlab 7.0. And the Access XP was used to create and manage the model database.

Assessment of groundwater and soil quality for agricultural purposes in Kopruoren basin, Kutahya, Turkey

NASA Astrophysics Data System (ADS)

Arslan, Sebnem

2017-07-01

This research evaluated the irrigation water and agricultural soil quality in the Kopruoren Basin by using hierarchical cluster analysis. Physico-chemical properties and major ion chemistry of 19 groundwater samples were used to determine the irrigation water quality indices. The results revealed out that the groundwaters are in general suitable for irrigation and have low sodium hazard, although they are very hard in nature due to the dominant presence of Ca+2, Mg+2 and HCO3- ions. Water samples contain arsenic in concentrations below the recommended guidelines for irrigation (59.7 ± 14.7 μg/l), however, arsenic concentrations in 89% of the 9 soil samples exceed the maximum allowable concentrations set for agricultural soils (81 ± 24.3 mg/kg). Nickel element, albeit not present in high concentrations in water samples, is enriched in all of the agricultural soil samples (390 ± 118.2 mg/kg). Hierarchical cluster analysis studies conducted to identify the sources of chemical constituents in water and soil samples elicited that the chemistry of the soils in the study area are highly impacted by the soil parent material and both geogenic and anthropogenic pollution sources are responsible for the metal contents of the soil samples. On the other hand, water chemistry in the area is affected by water-rock interactions, anthropogenic and agricultural pollution.

Characterization of Soil Samples of Enzyme Activity

ERIC Educational Resources Information Center

Freeland, P. W.

1977-01-01

Described are nine enzyme essays for distinguishing soil samples. Colorimetric methods are used to compare enzyme levels in soils from different sites. Each soil tested had its own spectrum of activity. Attention is drawn to applications of this technique in forensic science and in studies of soil fertility. (Author/AJ)

SOLVENT EXTRACTION AND SOIL WASHING TREATMENT OF CONTAMINATED SOILS FROM WOOD PRESERVING SITES: BENCH SCALE STUDIES

EPA Science Inventory

Bench-scale solvent extraction and soil washing studies were performed on soil samples obtained from three abandoned wood preserving sites that included in the NPL. The soil samples from these sites were contaminated with high levels of polyaromatic hydrocarbons (PAHs), pentachlo...

Correlation of Optical Properties with Atmospheric Solid Organic Particles (ASOPs) in the Southern Great Plains

NASA Astrophysics Data System (ADS)

Bonanno, D.; Fraund, M. W.; Pham, D.; China, S.; Wang, B.; Laskin, A.; Gilles, M. K.; Moffet, R.

2017-12-01

The Holistic Interactions of Shallow Clouds, Aerosols, and Land-Ecosystems (HI-SCALE) Campaign was carried out to gain a better understanding of the lifecycle of shallow clouds. The HISCALE experiment was designed to contrast two seasons, wet and dry, and determine their effect on atmospheric cloud and aerosol processes. The spring component to HISCALE was selected to characterize mixing state for particles collected onto substrates. Sampling was performed to obtain airborne soil organic particles (ASOP), which are believed to be ejected following rain events. The unique composition of the ASOP have been shown to affect optical properties. The collection of particles took place at the Atmospheric Radiation Measurement Southern Great Plains (ARM SGP) field site. The Scanning Transmission X-Ray Microscope (STXM) was used to image the samples collected during the first HI-SCALE Campaign to determine the carbonaceous mixing state. Scanning Electron Microscopy Energy-dispersive X-ray (SEM/EDX) analysis is more sensitive to the inorganic makeup of particles, while STXM renders a more comprehensive analysis of the organics. Measurements such as nephelometry, Particle Soot Absorption Photometry (PSAP) from the ARM archive are correlated with microscopy measurements. The primary focus is the relation between composition and morphology of ASOP with optical properties.

Study on a pattern classification method of soil quality based on simplified learning sample dataset

USGS Publications Warehouse

Zhang, Jiahua; Liu, S.; Hu, Y.; Tian, Y.

2011-01-01

Based on the massive soil information in current soil quality grade evaluation, this paper constructed an intelligent classification approach of soil quality grade depending on classical sampling techniques and disordered multiclassification Logistic regression model. As a case study to determine the learning sample capacity under certain confidence level and estimation accuracy, and use c-means algorithm to automatically extract the simplified learning sample dataset from the cultivated soil quality grade evaluation database for the study area, Long chuan county in Guangdong province, a disordered Logistic classifier model was then built and the calculation analysis steps of soil quality grade intelligent classification were given. The result indicated that the soil quality grade can be effectively learned and predicted by the extracted simplified dataset through this method, which changed the traditional method for soil quality grade evaluation. ?? 2011 IEEE.

Assessment of soil and water contaminants from selected locations in and near the Idaho Army National Guard Orchard Training Area, Ada County, Idaho, 2001-2003

USGS Publications Warehouse

Parliman, D.J.

2004-01-01

In 2001, the National Guard Bureau and the U.S. Geological Survey began a project to compile hydrogeologic data and determine presence or absence of soil, surface-water, and ground-water contamination at the Idaho Army National Guard Orchard Training Area in southwestern Idaho. Between June 2002 and April 2003, a total of 114 soil, surface-water, ground-water, precipitation, or dust samples were collected from 68 sample sites (65 different locations) in the Orchard Training Area (OTA) or along the vehicle corridor to the OTA. Soil and water samples were analyzed for concentrations of selected total trace metals, major ions, nutrients, explosive compounds, semivolatile organics, and petroleum hydrocarbons. Water samples also were analyzed for concentrations of selected dissolved trace metals and major ions. Distinguishing naturally occurring large concentrations of trace metals, major ions, and nutrients from contamination related to land and water uses at the OTA was difficult. There were no historical analyses for this area to compare with modern data, and although samples were collected from 65 locations in and near the OTA, sampled areas represented only a small part of the complex OTA land-use areas and soil types. For naturally occurring compounds, several assumptions were made?anomalously large concentrations, when tied to known land uses, may indicate presence of contamination; naturally occurring concentrations cannot be separated from contamination concentrations in mid- and lower ranges of data; and smallest concentrations may represent the lowest naturally occurring range of concentrations and (or) the absence of contaminants related to land and water uses. Presence of explosive, semivolatile organic (SVOC), and petroleum hydrocarbon compounds in samples indicates contamination from land and water uses. In areas along the vehicle corridor and major access roads within the OTA, most trace metal, major ion, and nutrient concentrations in soil samples were not in the upper 10th percentile of data, but concentrations of 25 metals, ions, or nutrients were in the upper 10th percentile in a puddle sample near the heavy equipment maneuvering area, MPRC-H. The largest concentrations of tin, ammonia, and nitrite plus nitrate (as nitrogen) in water from the OTA were detected in a sample from this puddle. Petroleum hydrocarbons were the most common contaminant, detected in all soil and surface-water samples. An SVOC, bis (2-ethylhexyl) phthalate, a plasticizer, was detected at a site along the vehicle corridor. In Maneuver Areas within the OTA, many soil samples contained at least one trace metal, major ion, or nutrient in the upper 10th percentile of data, and the largest concentrations of cobalt, iron, mercury, titanium, sodium, ammonia, or total phosphorus were detected in 6 of 13 soil samples outside the Tadpole Lake area. The largest concentrations of aluminum, arsenic, beryllium, nickel, selenium, silver, strontium, thallium, vanadium, chloride, potassium, sulfate, and nitrite plus nitrate were detected in soil samples from the Tadpole Lake area. Water from Tadpole Lake contained the largest total concentrations of 19 trace metals, 4 major ions, and 1 nutrient. Petroleum hydrocarbons were detected in 5 soil samples and water from Tadpole Lake. SVOCs related to combustion of fuel or plasticizers were detected in 1 soil sample. Explosive compounds were detected in 1 precipitation sample.In the Impact Area within the OTA, most soil samples contained at least one trace metal, major ion, or nutrient in the upper 10th percentile of data, and the largest concentrations of barium, chromium, copper, manganese, lead, or orthophosphate were detected in 6 of the 18 soil samples. Petroleum hydrocarbons were detected in 4 soil samples, SVOCs in 6 samples, and explosive compounds in 4 samples. In the mobilization and training equipment site (MATES) compound adjacent to the OTA, all soil and water samples contained at lea

BOREAS HYD-6 Aircraft Gamma Ray Soil Moisture Data

NASA Technical Reports Server (NTRS)

Peck, Eugene L.; Hall, Forrest G. (Editor); Knapp, David E. (Editor); Carroll, Thomas; Smith, David E. (Technical Monitor)

2000-01-01

The Boreal Ecosystem-Atmosphere Study (BOREAS) Hydrology (HYD)-6 team collected several data sets related to the moisture content of soil and overlying humus layers. This data set contains percent soil moisture (by weight) (and/or water content if there is a moss/humus layer) measured from aircraft using a terrestrial gamma ray instrument. There are also data that indicate the location of the aircraft at the time it collected the terrestrial gamma ray data for the various flight lines and bins. The location information contains a list of coordinates that indicate the path of the aircraft for each bin. The data were collected during four time periods from September 1993 to September 1994 over the southern study area (SSA) and two time periods from February to August 1994 over the northern study area (NSA). The data are available in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884) or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Wood and bark of Pinus halepensis as archives of heavy metal pollution in the Mediterranean Region.

PubMed

Rodríguez Martin, José Antonio; Gutiérrez, Carmen; Torrijos, Manuel; Nanos, Nikos

2018-04-18

Natural levels of heavy metals (HM) have increased during the industrial era to the point of posing a serious threat to the environment. The use of tree species to record contamination is a well-known practice. The objective of the study was to compare HM levels under different pollution conditions: a) soil pollution due to mining waste; b) atmospheric pollution due to coal-fired power plant emissions. We report significant HM enrichment in Pinus halepensis tissues. Near a burning power plant, Pb content in a tree wood was 2.5-fold higher that in natural areas (no pollution; NP). In mining areas, Cd content was 25-fold higher than NP. The hypothesis that HM contents in tree rings should register pollution is debatable. HM uptake by pines from soil, detoxification mechanisms and resuspended local soil dust is involved in HM contents in wood and bark. Copyright © 2018 Elsevier Ltd. All rights reserved.

[Evaluation and source analysis of the mercury pollution in soils and vegetables around a large-scale zinc smelting plant].

PubMed

Liu, Fang; Wang, Shu-Xiao; Wu, Qing-Ru; Lin, Hai

2013-02-01

The farming soil and vegetable samples around a large-scale zinc smelter were collected for mercury content analyses, and the single pollution index method with relevant regulations was used to evaluate the pollution status of sampled soils and vegetables. The results indicated that the surface soil and vegetables were polluted with mercury to different extent. Of the soil samples, 78% exceeded the national standard. The mercury concentration in the most severely contaminated area was 29 times higher than the background concentration, reaching the severe pollution degree. The mercury concentration in all vegetable samples exceeded the standard of non-pollution vegetables. Mercury concentration, in the most severely polluted vegetables were 64.5 times of the standard, and averagely the mercury concentration in the vegetable samples was 25.4 times of the standard. For 85% of the vegetable samples, the mercury concentration, of leaves were significantly higher than that of roots, which implies that the mercury in leaves mainly came from the atmosphere. The mercury concentrations in vegetable roots were significantly correlated with that in soils, indicating the mercury in roots was mainly from soil. The mercury emissions from the zinc smelter have obvious impacts on the surrounding soils and vegetables. Key words:zinc smelting; mercury pollution; soil; vegetable; mercury content

Soil separator and sampler and method of sampling

DOEpatents

O'Brien, Barry H [Idaho Falls, ID; Ritter, Paul D [Idaho Falls, ID

2010-02-16

A soil sampler includes a fluidized bed for receiving a soil sample. The fluidized bed may be in communication with a vacuum for drawing air through the fluidized bed and suspending particulate matter of the soil sample in the air. In a method of sampling, the air may be drawn across a filter, separating the particulate matter. Optionally, a baffle or a cyclone may be included within the fluidized bed for disentrainment, or dedusting, so only the finest particulate matter, including asbestos, will be trapped on the filter. The filter may be removable, and may be tested to determine the content of asbestos and other hazardous particulate matter in the soil sample.

Spatial distributions and seasonal variations of organochlorine pesticides in water and soil samples in Bolu, Turkey.

PubMed

Karadeniz, Hatice; Yenisoy-Karakaş, Serpil

2015-03-01

In this study, a total of 75 water samples (38 groundwater and 37 surface water samples) and 54 surface soil samples were collected from the five districts of Bolu, which is located in the Western Black Sea Region of Turkey in the summer season of 2009. In the autumn season, 17 water samples (surface water and groundwater samples) and 17 soil samples were collected within the city center to observe the seasonal changes of organochlorine pesticides (OCPs). Groundwater and surface water samples were extracted using solid phase extraction. Soil samples were extracted ultrasonically. Sixteen OCP compounds in the standard solution were detected by a gas chromatography-electron capture detector (GC-ECD). Therefore, the method validation was performed for those 16 OCP compounds. However, 13 OCP compounds could be observed in the samples. The concentrations of most OCPs were higher in samples collected in the summer than those in the autumn. The most frequently observed pesticides were endosulfan sulfate and 4,4'-dichlorodiphenyltrichloroethane (DDT) in groundwater samples, α-HCH in surface water samples, and endosulfan sulfate in soil samples. The average concentration of endosulfan sulfate was the highest in water and soil samples. Compared to the literature values, the average concentrations in this study were lower values. Spatial distribution of OCPs was evaluated with the aid of contour maps for the five districts of Bolu. Generally, agricultural processes affected the water and soil quality in the region. However, non-agricultural areas were also affected by pesticides. The concentrations of pesticides were below the legal limits of European directives for each pesticide.

Mixture and method for simulating soiling and weathering of surfaces

DOEpatents

Sleiman, Mohamad; Kirchstetter, Thomas; Destaillats, Hugo; Levinson, Ronnen; Berdahl, Paul; Akbari, Hashem

2018-01-02

This disclosure provides systems, methods, and apparatus related to simulated soiling and weathering of materials. In one aspect, a soiling mixture may include an aqueous suspension of various amounts of salt, soot, dust, and humic acid. In another aspect, a method may include weathering a sample of material in a first exposure of the sample to ultraviolet light, water vapor, and elevated temperatures, depositing a soiling mixture on the sample, and weathering the sample in a second exposure of the sample to ultraviolet light, water vapor, and elevated temperatures.

Effect of heavy metals on pH buffering capacity and solubility of Ca, Mg, K, and P in non-spiked and heavy metal-spiked soils.

PubMed

Najafi, Sarvenaz; Jalali, Mohsen

2016-06-01

In many parts of the world, soil acidification and heavy metal contamination has become a serious concern due to the adverse effects on chemical properties of soil and crop yield. The aim of this study was to investigate the effect of pH (in the range of 1 to 3 units above and below the native pH of soils) on calcium (Ca), magnesium (Mg), potassium (K), and phosphorus (P) solubility in non-spiked and heavy metal-spiked soil samples. Spiked samples were prepared by cadmium (Cd), copper (Cu), nickel (Ni), and zinc (Zn) as chloride salts and incubating soils for 40 days. The pH buffering capacity (pHBC) of each sample was determined by plotting the amount of H(+) or OH(-) added (mmol kg(-1)) versus the related pH value. The pHBC of soils ranged from 47.1 to 1302.5 mmol kg(-1) for non-spiked samples and from 45.0 to 1187.4 mmol kg(-1) for spiked soil samples. The pHBC values were higher in soil 2 (non-spiked and spiked) which had higher calcium carbonate content. The results indicated the presence of heavy metals in soils generally decreased the solution pH and pHBC values in spiked samples. In general, solubility of Ca, Mg, and K decreased with increasing equilibrium pH of non-spiked and spiked soil samples. In the case of P, increasing the pH to about 7, decreased the solubility in all soils but further increase of pH from 7, enhanced P solubility. The solubility trends and values for Ca, Mg, and K did not differed significantly in non-spiked and spiked samples. But in the case of P, a reduction in solubility was observed in heavy metal-spiked soils. The information obtained in this study can be useful to make better estimation of the effects of soil pollutants on anion and cation solubility from agricultural and environmental viewpoints.

Cores to the rescue: how old cores enable new science

NASA Astrophysics Data System (ADS)

Ito, E.; Noren, A. J.; Brady, K.

2016-12-01

The value of archiving scientific specimens and collections for the purpose of enabling further research using new analytical techniques, resolving conflicting results, or repurposing them for entirely new research, is often discussed in abstract terms. We all agree that samples with adequate metadata ought to be archived systematically for easy access, for a long time and stored under optimal conditions. And yet, as storage space fills, there is a temptation to cull the collection, or when a researcher retires, to discard the collection unless the researcher manages to make his or her own arrangement for the collection to be accessioned elsewhere. Nobody has done anything with these samples in over 20 years! Who would want them? It turns out that plenty of us do want them, if we know how to find them and if they have sufficient metadata to assess past work and suitability for new analyses. The LacCore collection holds over 33 km of core from >6700 sites in diverse geographic locations worldwide with samples collected as early as 1950s. From these materials, there are many examples to illustrate the scientific value of archiving geologic samples. One example that benefitted Ito personally were cores from Lakes Mirabad and Zeribar, Iran, acquired in 1963 by Herb Wright and his associates. Several doctoral and postdoctoral students generated and published paleoecological reconstructions based on cladocerans, diatoms, pollen or plant macrofossils, mostly between 1963 and 1967. The cores were resampled in 1990s by a student being jointly advised by Wright and Ito for oxygen isotope analysis of endogenic calcite. The results were profitably compared with pollen and the results published in 2001 and 2006. From 1979 until very recently, visiting Iran for fieldwork was not pallowed for US scientists. Other examples will be given to further illustrate the power of archived samples to advance science.

The UK Biobank sample handling and storage protocol for the collection, processing and archiving of human blood and urine.

PubMed

Elliott, Paul; Peakman, Tim C

2008-04-01

UK Biobank is a large prospective study in the UK to investigate the role of genetic factors, environmental exposures and lifestyle in the causes of major diseases of late and middle age. Extensive data and biological samples are being collected from 500,000 participants aged between 40 and 69 years. The biological samples that are collected and how they are processed and stored will have a major impact on the future scientific usefulness of the UK Biobank resource. The aim of the UK Biobank sample handling and storage protocol is to specify methods for the collection and storage of participant samples that give maximum scientific return within the available budget. Processing or storage methods that, as far as can be predicted, will preclude current or future assays have been avoided. The protocol was developed through a review of the literature on sample handling and processing, wide consultation within the academic community and peer review. Protocol development addressed which samples should be collected, how and when they should be processed and how the processed samples should be stored to ensure their long-term integrity. The recommended protocol was extensively tested in a series of validation studies. UK Biobank collects about 45 ml blood and 9 ml of urine with minimal local processing from each participant using the vacutainer system. A variety of preservatives, anti-coagulants and clot accelerators is used appropriate to the expected end use of the samples. Collection of other material (hair, nails, saliva and faeces) was also considered but rejected for the full cohort. Blood and urine samples from participants are transported overnight by commercial courier to a central laboratory where they are processed and aliquots of urine, plasma, serum, white cells and red cells stored in ultra-low temperature archives. Aliquots of whole blood are also stored for potential future production of immortalized cell lines. A standard panel of haematology assays is completed on whole blood from all participants, since such assays need to be conducted on fresh samples (whereas other assays can be done on stored samples). By the end of the recruitment phase, 15 million sample aliquots will be stored in two geographically separate archives: 9.5 million in a -80 degrees C automated archive and 5.5 million in a manual liquid nitrogen archive at -180 degrees C. Because of the size of the study and the numbers of samples obtained from participants, the protocol stipulates a highly automated approach for the processing and storage of samples. Implementation of the processes, technology, systems and facilities has followed best practices used in manufacturing industry to reduce project risk and to build in quality and robustness. The data produced from sample collection, processing and storage are highly complex and are managed by a commercially available LIMS system fully integrated with the entire process. The sample handling and storage protocol adopted by UK Biobank provides quality assured and validated methods that are feasible within the available funding and reflect the size and aims of the project. Experience from recruiting and processing the first 40,000 participants to the study demonstrates that the adopted methods and technologies are fit-for-purpose and robust.

Analyses and description of soil samples from Mountain Lake and Peters Mountain Wilderness Study areas, Virginia and West Virginia

USGS Publications Warehouse

Motooka, J.M.; Curtis, Craig A.; Lesure, Frank Gardner

1978-01-01

Semiquantitative emission spectrographic analyses for 30 elements and atomic absorption analysis for zinc on 98 soil samples are reported here in detail. Location for all samples are in Universal Transverse Mercator (UTM) coordinates. A few samples of soil developed on Lower Devonian sandstone and chert contain more barium and zinc than soils on other formations but do not suggest the occurrence of economic concentrations of either element.

Antibiotic resistance of microorganisms in agricultural soils in Russia

NASA Astrophysics Data System (ADS)

Danilova, Natasha; Galitskaya, Polina; Selivanovskaya, Svetlana

2017-04-01

Antibiotics are medicines widely used to treat and prevent bacterial infections not only in human medicine but also in veterinary. Besides, in animal husbandry antibiotics are often used in for stimulation of animal's growth. Many antibiotics used for veterinary purposes are weakly absorbed in the animal's gut. So up to 90% of the administered antibiotics are excreted with manure and urine. Therefore use of manure as an organic fertilizer leads to formation and spreading of antibiotic resistance among soil microbes. Another reason of such spreading is the horizontal transfer of genes encoding antibiotic resistance from manure to soil microflora. The level of antibiotic resistance genes pollution of soils has not been properly studied yet. The aim of this study was to estimate the contamination of agricultural soils by antibiotic resistant genes. 30 samples of agricultural soils were selected around of Kazan city (Tatarstan Republic) with 1.3 Mio citizens. Since tetracycline is reported to be the most wide spread veterinary antibiotic in Russia, we estimated the level of soil contamination by tet(X) gene encoding tetracycline decomposition in microbial cell. Real time PCR method with specific primers was used as a method of investigation. Particle size type distribution of 31% of soil samples was estimated to be sandy clay, and 69% of soil samples - to silty clay. Content of dissoluble organic carbon ranged from 0,02 mg g -1 (sample 20) to 0,46 mg g -1 (sample 16). Respiration activity and microbial biomass of soils were estimated to be 0,80-5,28 CO2 C mg g -1 h-1 and 263,51-935,77 µg kg - 1 respectively. The values presented are typical for soils of Tatarstan Republic. In terms of the antibiotic resistant gene content, 27 of 30 samples investigated contained tet(X) gene, while 52% of the samples were highly contaminated, 34% of samples were middle contaminated and 14% of samples - weakly contaminated.

RESULTS FROM EPA FUNDED RESEARCH PROGRAMS ON THE IMPORTANCE OF PURGE VOLUME, SAMPLE VOLUME, SAMPLE FLOW RATE AND TEMPORAL VARIATIONS ON SOIL GAS CONCENTRATIONS

EPA Science Inventory

Two research studies funded and overseen by EPA have been conducted since October 2006 on soil gas sampling methods and variations in shallow soil gas concentrations with the purpose of improving our understanding of soil gas methods and data for vapor intrusion applications. Al...

The Preparation of Gelatine-Embedded Soil and Litter Sections and Their Application to Some Soil Ecological Studies.

ERIC Educational Resources Information Center

Anderson, J. M.

1978-01-01

A method is described for preparing large gelatine-embedded soil sections for ecological studies. Sampling methods reduce structural disturbance of the samples to a minimum and include freezing the samples in the field to kill soil invertebrates in their natural microhabitats. Projects are suggested for upper secondary school students. (Author/BB)

CTEPP STANDARD OPERATING PROCEDURE FOR COLLECTION OF SOIL SAMPLES FOR PERSISTENT ORGANIC POLLUTANTS (SOP-2.20)

EPA Science Inventory

This SOP describes the method for collecting soil samples from the child's outdoor play area to measure for persistent organic pollutants. Soil samples are collected by scraping up the top 0.5 cm of soil in a 0.095 m2 (1 ft2) area in the middle of the child's play area.

Reduction of Photo Bleaching and Long Term Archiving of Chemically Cleared GFP-Expressing Mouse Brains

PubMed Central

Becker, Klaus; Hahn, Christian Markus; Saghafi, Saiedeh; Jährling, Nina; Wanis, Martina; Dodt, Hans-Ulrich

2014-01-01

Tissue clearing allows microscopy of large specimens as whole mouse brains or embryos. However, lipophilic tissue clearing agents as dibenzyl ether limit storage time of GFP-expressing samples to several days and do not prevent them from photobleaching during microscopy. To preserve GFP fluorescence, we developed a transparent solid resin formulation, which maintains the specimens' transparency and provides a constant signal to noise ratio even after hours of continuous laser irradiation. If required, high-power illumination or long exposure times can be applied with virtually no loss in signal quality and samples can be archived for years. PMID:25463047

An Archival Search For Young Globular Clusters in Galaxies

NASA Astrophysics Data System (ADS)

Whitmore, Brad

1995-07-01

One of the most intriguing results from HST has been the discovery of ultraluminous star clusters in interacting and merging galaxies. These clusters have the luminosities, colors, and sizes that would be expected of young globular clusters produced by the interaction. We propose to use the data in the HST Archive to determine how prevalent this phenomena is, and to determine whether similar clusters are produced in other environments. Three samples will be extracted and studied in a systematic and consistent manner: 1} interacting and merging galaxies, 2} starburst galaxies, 3} a control sample of ``normal'' galaxies. A preliminary search of the archives shows that there are at least 20 galaxies in each of these samples, and the number will grow by about 50 observations become available. The data will be used to determine the luminosity function, color histogram , spatial distribution, and structural properties of the clusters using the same techniques employed in our study of NGC 7252 {``Atoms -for-Peace'' galaxy} and NGC 4038/4039 {``The Antennae''}. Our ultimate goals are: 1} to understand how globular clusters form, and 2} to use the clusters as evolutionary tracers to unravel the histories of interacting galaxies.

Implications of (reworked) aeolian sediments and paleosols for Holocene environmental change in Western Mongolia

NASA Astrophysics Data System (ADS)

Klinge, Michael; Lehmkuhl, Frank; Schulte, Philipp; Hülle, Daniela; Nottebaum, Veit

2017-09-01

In the semi-arid to semi-humid regions of western Mongolia four different geomorphological aeolian and fluvial archives were investigated in order to gain environmental information of landscape evolution during the late glacial and the Holocene. These archives, which contain aeolian deposits, fluvial sediments, and paleosols, are situated upon glacial moraines, fluvial terraces, floodplains, or mountain slopes. While radiometric dating provides information about the age of the sediment and paleosols, grain size and element distribution provide information about the sediment source and soil development. Extensive aeolian sediment transport occurred from 17 to 10 ka during the late glacial when climate was cold and dry. Since that period the developing steppe and alpine meadow vegetation served as a dust trap. During the warm and wet early to mid-Holocene sediment transport was reduced under a dense vegetation cover. All paleosols of the investigated archives show late Holocene ages which point to an environmental turning point around 3 ka. Since then, the Neoglacial period started with cooler climate conditions and periglacial processes intensified again. Recognizable glacier advances occurred during the Little Ice Age several centuries ago. Since then, global climate change leads to warmer and more arid conditions. During the late Holocene, a new period of strong geomorphological activity started and huge quantities of aeolian, colluvial and fluvial sediment accumulated. These intensified soil relocation processes cannot be explained exclusively by climate change because there are no explicit indications found in the palynological and lacustrine records of Mongolia. This discrepancy suggests that the additional factor of human impact has to be considered, which amplified the climate signal on the landscape. Simultaneously, when the enhanced geomorphological processes occurred, the prehistoric people changed from hunting and gathering to livestock husbandry. A first extensive population growth of the Scythian nomadic tribes is documented for the beginning of the Bronze Age in Central Asia. This temporal concurrence supports the finding of a first extensive human impact on landscape development.

Processing Protocol for Soil Samples Potentially ...

EPA Pesticide Factsheets

Method Operating Procedures This protocol describes the processing steps for 45 g and 9 g soil samples potentially contaminated with Bacillus anthracis spores. The protocol is designed to separate and concentrate the spores from bulk soil down to a pellet that can be used for further analysis. Soil extraction solution and mechanical shaking are used to disrupt soil particle aggregates and to aid in the separation of spores from soil particles. Soil samples are washed twice with soil extraction solution to maximize recovery. Differential centrifugation is used to separate spores from the majority of the soil material. The 45 g protocol has been demonstrated by two laboratories using both loamy and sandy soil types. There were no significant differences overall between the two laboratories for either soil type, suggesting that the processing protocol would be robust enough to use at multiple laboratories while achieving comparable recoveries. The 45 g protocol has demonstrated a matrix limit of detection at 14 spores/gram of soil for loamy and sandy soils.

Processing protocol for soil samples potentially contaminated with Bacillus anthracis spores [HS7.52.02 - 514

USGS Publications Warehouse

Silvestri, Erin E.; Griffin, Dale W.

2017-01-01

This protocol describes the processing steps for 45 g and 9 g soil samples potentially contaminated with Bacillus anthracis spores. The protocol is designed to separate and concentrate the spores from bulk soil down to a pellet that can be used for further analysis. Soil extraction solution and mechanical shaking are used to disrupt soil particle aggregates and to aid in the separation of spores from soil particles. Soil samples are washed twice with soil extraction solution to maximize recovery. Differential centrifugation is used to separate spores from the majority of the soil material. The 45 g protocol has been demonstrated by two laboratories using both loamy and sandy soil types. There were no significant differences overall between the two laboratories for either soil type, suggesting that the processing protocol would be robust enough to use at multiple laboratories while achieving comparable recoveries. The 45 g protocol has demonstrated a matrix limit of detection at 14 spores/gram of soil for loamy and sandy soils.

Formation of Gas Traps in the Martian Soil and Implications for Methane Variability on Mars.

NASA Astrophysics Data System (ADS)

Pavlov, A.; Davis, J.; Redwing, E.; Trainer, M. G.; Johnson, C.

2017-12-01

Several independent groups have reported on the detection of methane in the Martian atmosphere. Mars Science Laboratory (MSL) methane observations display rapid increase of the atmospheric methane abundance from 1 ppb to 7 ppb levels followed by an abrupt disappearance suggest the possibility of small, local, near-surface sources of methane. Such sources may take the form of shallow subsurface cemented soil caps which can trap gases and are readily activated by either motion of the MSL rover itself, by impacts of small meteorites, or even annual climate oscillations. We have simulated the formation of such soil caps in the shallow subsurface Martian-like condition. We show that the initially uniform sample of icy soil (JSC-Mars-1A) with Mg perchlorate exhibit quick stratification on the scale of several cm under Martian pressures over the period of several days. Briny water migrates towards the top of the sample resulting in the enhanced abundance of perchlorates in the top few cm. As water evaporates and ice sublimates from the top of the sample, perchlorate remains in the top layer of soil causing soil cementation and formation of the cap. The observed caps were solid, ice-free and effectively shut off sublimation of ice from underneath the cap. We tested whether similar soil caps can trap various gases (including methane) in the shallow subsurface of Mars. We injected neon gas at the bottom of the soil sample and monitored neon gas permeability through the soil sample by measuring gas pressure differential above and below the soil sample. We found that a mixture of JSC-Mars-1A and 5% of Mg perchlorate produce gas impermeable soil cap capable of withstanding an excess of 5 mbars of neon under the cap at the soil temperatures +0.5 C - +9 C. The cap remained gas impermeable after subsequent cooling of the sample soil sample to the subzero temperatures. Gas permeability of the soil caps under various temperatures and atmospheric pressures will be reported. Our results suggest that the formation of cemented soil caps can be widespread phenomena on Mars in the areas of shallow permafrost and abundant perchlorates or RSL slopes. Potentially, soil caps can form gas pockets for trace species (like methane) which can be relatively easily disturbed causing abrupt changes in the atmospheric methane abundance detected by MSL's Curiosity rover.

Quantitative evaluation of the CEEM soil sampling intercomparison.

PubMed

Wagner, G; Lischer, P; Theocharopoulos, S; Muntau, H; Desaules, A; Quevauviller, P

2001-01-08

The aim of the CEEM soil project was to compare and to test the soil sampling and sample preparation guidelines used in the member states of the European Union and Switzerland for investigations of background and large-scale contamination of soils, soil monitoring and environmental risk assessments. The results of the comparative evaluation of the sampling guidelines demonstrated that, in soil contamination studies carried out with different sampling strategies and methods, comparable results can hardly be expected. Therefore, a reference database (RDB) was established by the organisers, which acted as a basis for the quantitative comparison of the participants' results. The detected deviations were related to the methodological details of the individual strategies. The comparative evaluation concept consisted of three steps: The first step was a comparison of the participants' samples (which were both centrally and individually analysed) between each other, as well as with the reference data base (RDB) and some given soil quality standards on the level of concentrations present. The comparison was made using the example of the metals cadmium, copper, lead and zinc. As a second step, the absolute and relative deviations between the reference database and the participants' results (both centrally analysed under repeatability conditions) were calculated. The comparability of the samples with the RDB was categorised on four levels. Methods of exploratory statistical analysis were applied to estimate the differential method bias among the participants. The levels of error caused by sampling and sample preparation were compared with those caused by the analytical procedures. As a third step, the methodological profiles of the participants were compiled to concisely describe the different procedures used. They were related to the results to find out the main factors leading to their incomparability. The outcome of this evaluation process was a list of strategies and methods, which are problematic with respect to comparability, and should be standardised and/or specified in order to arrive at representative and comparable results in soil contamination studies throughout Europe. Pre-normative recommendations for harmonising European soil sampling guidelines and standard operating procedures have been outlined in Wagner G, Desules A, Muntau H, Theocharopoulos S. Comparative Evaluation of European Methods for Sampling and Sample Preparation of Soils for Inorganic Analysis (CEEM Soil). Final Report of the Contract SMT4-CT96-2085, Sci Total Environ 2001;264:181-186. Wagner G, Desaules A, Munatu H. Theocharopolous S, Quevauvaller Ph. Suggestions for harmonising sampling and sample pre-treatment procedures and improving quality assurance in pre-analytical steps of soil contamination studies. Paper 1.7 Sci Total Environ 2001b;264:103-118.

Development of a Climatology of Vertically Complete Wind Profiles from Doppler Radar Wind Profiler Systems

NASA Technical Reports Server (NTRS)

Barbre, Robert E., Jr.

2015-01-01

This paper describes in detail the QC and splicing methodology for KSC's 50- and 915-MHz DRWP measurements that generates an extensive archive of vertically complete profiles from 0.20-18.45 km. The concurrent POR from each archive extends from April 2000 to December 2009. MSFC NE applies separate but similar QC processes to each of the 50- and 915-MHz DRWP archives. DRWP literature and data examination provide the basis for developing and applying the automated and manual QC processes on both archives. Depending on the month, the QC'ed 50- and 915-MHz DRWP archives retain 52-65% and 16-30% of the possible data, respectively. The 50- and 915-MHz DRWP QC archives retain 84-91% and 85-95%, respectively, of all the available data provided that data exist in the non- QC'ed archives. Next, MSFC NE applies an algorithm to splice concurrent measurements from both DRWP sources. Last, MSFC NE generates a composite profile from the (up to) five available spliced profiles to effectively characterize boundary layer winds and to utilize all possible 915-MHz DRWP measurements at each timestamp. During a given month, roughly 23,000-32,000 complete profiles exist from 0.25-18.45 km from the composite profiles' archive, and approximately 5,000- 27,000 complete profiles exist from an archive utilizing an individual 915-MHz DRWP. One can extract a variety of profile combinations (pairs, triplets, etc.) from this sample for a given application. The sample of vertically complete DRWP wind measurements not only gives launch vehicle customers greater confidence in loads and trajectory assessments versus using balloon output, but also provides flexibility to simulate different DOL situations across applicable altitudes. In addition to increasing sample size and providing more flexibility for DOL simulations in the vehicle design phase, the spliced DRWP database provides any upcoming launch vehicle program with the capability to utilize DRWP profiles on DOL to compute vehicle steering commands, provided the program applies the procedures that this report describes to new DRWP data on DOL. Decker et al. (2015) details how SLS is proposing to use DRWP data and splicing techniques on DOL. Although automation could enhance the current DOL 50-MHz DRWP QC process and could streamline any future DOL 915-MHz DRWP QC and splicing process, the DOL community would still require manual intervention to ensure that the vehicle only uses valid profiles. If a program desires to use high spatial resolution profiles, then the algorithm could randomly add high-frequency components to the DRWP profiles. The spliced DRWP database provides lots of flexibility in how one performs DOL simulations, and the algorithms that this report provides will assist the aerospace and atmospheric communities that are interested in utilizing the DRWP.

78 FR 60721 - National Oil and Hazardous Substances Pollution Contingency Plan; National Priorities List...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-10-02

... groundwater study that was completed by the PRPs in January 1990. Many soil and groundwater samples were... detected in soil and groundwater samples on a sporadic and limited basis. During the supplemental RI... investigation, CDM collected 305 soil samples from both surface and subsurface locations. Surface samples were...

Rapid fusion method for the determination of refractory thorium and uranium isotopes in soil samples

DOE PAGES

Maxwell, Sherrod L.; Hutchison, Jay B.; McAlister, Daniel R.

2015-02-14

Recently, approximately 80% of participating laboratories failed to accurately determine uranium isotopes in soil samples in the U.S Department of Energy Mixed Analyte Performance Evaluation Program (MAPEP) Session 30, due to incomplete dissolution of refractory particles in the samples. Failing laboratories employed acid dissolution methods, including hydrofluoric acid, to recover uranium from the soil matrix. The failures illustrate the importance of rugged soil dissolution methods for the accurate measurement of analytes in the sample matrix. A new rapid fusion method has been developed by the Savannah River National Laboratory (SRNL) to prepare 1-2 g soil sample aliquots very quickly, withmore » total dissolution of refractory particles. Soil samples are fused with sodium hydroxide at 600 ºC in zirconium crucibles to enable complete dissolution of the sample. Uranium and thorium are separated on stacked TEVA and TRU extraction chromatographic resin cartridges, prior to isotopic measurements by alpha spectrometry on cerium fluoride microprecipitation sources. Plutonium can also be separated and measured using this method. Batches of 12 samples can be prepared for measurement in <5 hours.« less

Microbial diversity in firework chemical exposed soil and water samples collected in Virudhunagar district, Tamil Nadu, India.

PubMed

Dhasarathan, P; Theriappan, P; Ashokraja, C

2010-03-01

Microbial diversity of soil and water samples collected from pyrochemicals exposed areas of Virdhunagar district (Tamil Nadu, India) was studied. Soil and water samples from cultivable area, waste land and city area of the same region were also studied for a comparative acount. There is a remarkable reduction in total heterotrophic bacterial population (THB) in pyrochemicals exposed soil and water samples (42 × 10(4) CFU/g and 5.6 × 10(4) CFU/ml respectively), compared to the THB of cultivable area soil and water samples (98 × 10(7) CFU/g and 38.6 × 10(7) CFU/ml). The generic composition the THB of the pyrochemicals exposed samples too exhibited considerable change compared to other samples. Pseudomonas sp. was the predominant one (41.6%) followed by Achromobacter sp. (25%) in pyrochemical exposed soil and Pseudomonas sp. was the predominant one (25%) in pyrochemical exposed water samples followed by Bacillus sp. (25%) and Micrococcus sp. (16.6%). It was observed that Cornybacterium sp. and Micrococcus sp. were absent completely in pyrochemical exposed soil and Achromobacter sp. was missing in the pyrochemical exposed water samples, which were present in the other samples. The outcome of this study clearly demonstrates that pollutants such as chemicals used in pyrotechniques affect the microbial biodiversity and suitable measures have to be taken to control the pollution level and to save biodiversity.

Lead contamination of subarctic lakes and its response to reduced atmospheric fallout: can the recovery process be counteracted by the ongoing climate change?

PubMed

Klaminder, Jonatan; Hammarlund, Dan; Kokfelt, Ulla; Vonk, Jorien E; Bigler, Christian

2010-04-01

Can a climate-triggered export of old contaminants from the soil alter the lead (Pb) contaminant burden of subarctic lakes? To address this question, we reconstructed the pollution history of three high latitude lakes situated in a region where a recent climatic shift has occurred. Dated sediment records were used as archives of past Pb inputs to the lakes, where the difference in the (206)Pb/(207)Pb ratio between atmospheric contaminants ((206)Pb/(207)Pb ratio <1.16) and geogenic Pb in the catchment soil ((206)Pb/(207)Pb ratio >1.22) were used to trace fluxes of Pb contaminants. Lead contaminants were found in sediments deposited since Roman times. A significant export of Pb from the soil contaminant pool is indicated in two of the lakes surrounded by near-shore permafrost soils. Here, levels of Pb contaminants and (206)Pb/(207)Pb ratios of sediments deposited after the 1970s appear not to have been strongly affected by the >or=90% reduction in atmospheric deposition rates and increasing (206)Pb/(207)Pb ratios of atmospheric Pb since the 1990s. We concluded that soil processes stimulated by the ongoing climate change at high latitudes might work counteractive to efforts to reduce contaminant levels in subarctic lakes.

The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.

PubMed

Deck, John; Gaither, Michelle R; Ewing, Rodney; Bird, Christopher E; Davies, Neil; Meyer, Christopher; Riginos, Cynthia; Toonen, Robert J; Crandall, Eric D

2017-08-01

The Genomic Observatories Metadatabase (GeOMe, http://www.geome-db.org/) is an open access repository for geographic and ecological metadata associated with biosamples and genetic data. Whereas public databases have served as vital repositories for nucleotide sequences, they do not accession all the metadata required for ecological or evolutionary analyses. GeOMe fills this need, providing a user-friendly, web-based interface for both data contributors and data recipients. The interface allows data contributors to create a customized yet standard-compliant spreadsheet that captures the temporal and geospatial context of each biosample. These metadata are then validated and permanently linked to archived genetic data stored in the National Center for Biotechnology Information's (NCBI's) Sequence Read Archive (SRA) via unique persistent identifiers. By linking ecologically and evolutionarily relevant metadata with publicly archived sequence data in a structured manner, GeOMe sets a gold standard for data management in biodiversity science.

The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples

PubMed Central

Deck, John; Gaither, Michelle R.; Ewing, Rodney; Bird, Christopher E.; Davies, Neil; Meyer, Christopher; Riginos, Cynthia; Toonen, Robert J.; Crandall, Eric D.

2017-01-01

The Genomic Observatories Metadatabase (GeOMe, http://www.geome-db.org/) is an open access repository for geographic and ecological metadata associated with biosamples and genetic data. Whereas public databases have served as vital repositories for nucleotide sequences, they do not accession all the metadata required for ecological or evolutionary analyses. GeOMe fills this need, providing a user-friendly, web-based interface for both data contributors and data recipients. The interface allows data contributors to create a customized yet standard-compliant spreadsheet that captures the temporal and geospatial context of each biosample. These metadata are then validated and permanently linked to archived genetic data stored in the National Center for Biotechnology Information’s (NCBI’s) Sequence Read Archive (SRA) via unique persistent identifiers. By linking ecologically and evolutionarily relevant metadata with publicly archived sequence data in a structured manner, GeOMe sets a gold standard for data management in biodiversity science. PMID:28771471

Worldwide Abundance and Distribution of Bacillus thuringiensis Isolates

PubMed Central

Martin, Phyllis A. W.; Travers, Russell S.

1989-01-01

We found the insect control agent Bacillus thuringiensis to be a ubiquitous soil microorganism. Using acetate selection to screen soil samples, we isolated B. thuringiensis in 785 of 1,115 soil samples. These samples were obtained in the United States and 29 other countries. A total of 48% of the B. thuringiensis isolates (8,916 isolates) fit the biochemical description of known varieties, while 52% represented undescribed B. thuringiensis types. Over 60% (1,052 isolates) of the isolates tested for toxicity were toxic to insects in the orders Lepidoptera or Diptera. Soil samples were collected from various habitats, including those habitats with different numbers of insects. The current presence of insects did not predict the presence of B. thuringiensis in a particular soil sample. B. thuringiensis was most abundant in samples from Asia. PMID:16348022

A common soil handling technique can generate incorrect estimates of soil biota effects on plants

USDA-ARS?s Scientific Manuscript database

Several plant-soil biota (PSB) studies were recently published in high profile journals that used the suspect “mixed soil sampling” methodology. To explore the extent to which mixing field samples (i.e. employing mixed soil sample designs) can generate erroneous conclusions, we used real data to pa...

Sampling protocol recommendations for measuring soil organic carbon stocks in the tropics

NASA Astrophysics Data System (ADS)

van Straaten, Oliver; Veldkamp, Edzo; Corre, Marife D.

2013-04-01

In the tropics, there is an urgent need for cost effective sampling approaches to quantify soil organic carbon (SOC) changes associated with land-use change given the lack of reliable data. The tropics are especially important considering the high deforestation rates, the huge belowground carbon pool and the fast soil carbon turnover rates. In the framework of a pan-tropic (Peru, Cameroon and Indonesia) land-use change study, some highly relevant recommendations on the SOC stocks sampling approaches have emerged. In this study, where we focused on deeply weathered mineral soils, we quantified changes in SOC stock following land-use change (deforestation and subsequent establishment of other land-uses). We used a space-for-time substitution sampling approach, measured SOC stocks in the top three meters of soil and compared recently converted land-uses with adjacent reference forest plots. In each respective region we investigated the most predominant land-use trajectories. In total 157 plots were established across the three countries, where soil samples were taken to a depth of three meters from a central soil pit and from the topsoil (to 0.5m) from 12 pooled composite samples. Finding 1 - soil depth: despite the fact that the majority of SOC stock from the three meter profile is found below one meter depth (50 to 60 percent of total SOC stock), the significant changes in SOC were only measured in the top meter of soil, while the subsoil carbon stock remained relatively unchanged by the land-use conversion. The only exception was for older (>50 yrs) cacao plantations in Cameroon where significant decreases were found below one meter. Finding 2 - pooled composite samples taken across the plot provided more spatially representative estimates of SOC stocks than samples taken from the central soil pit.

Concentrations of the Allelochemical (+/-)-catechin IN Centaurea maculosa soils.

PubMed

Perry, Laura G; Thelen, Giles C; Ridenour, Wendy M; Callaway, Ragan M; Paschke, Mark W; Vivanco, Jorge M

2007-12-01

The phytotoxin (+/-)-catechin has been proposed to mediate invasion and autoinhibition by the Eurasian plant Centaurea maculosa (spotted knapweed). The importance of (+/-)-catechin to C. maculosa ecology depends in part on whether sufficient catechin concentrations occur at appropriate times and locations within C. maculosa soil to influence neighboring plants. Previous research on catechin in C. maculosa soils has yielded conflicting results, with some studies finding high soil catechin concentrations and other, more recent studies finding little or no catechin in field soils. Here, we report the most extensive study of soil catechin concentrations to date. We examined soil catechin concentrations in 402 samples from 11 C. maculosa sites in North America sampled in consecutive months over 1 yr, excluding winter months. One site was sampled on seven dates, another was sampled twice, and the remaining nine sites were each sampled once on a range of sampling dates. Methods used were similar to those with which we previously measured high soil catechin concentrations. We detected catechin only in the site that was sampled on seven dates and only on one sampling date in that site (May 16 2006), but in all samples collected on that date. The mean soil catechin concentration on that date was 0.65 +/- 0.45 (SD) mg g(-1), comparable to previously reported high concentrations. There are a number of possible explanations for the infrequency with which we detected soil catechin in this work compared to previous studies. Differences in results could reflect spatial and temporal variation in catechin exudation or degradation, as we examined different sites in a different year from most previous studies. Also, large quantities of catechin were detected in blanks for two sampling periods in the present study, leading us to discard those data. This contamination suggests that previous reports of high catechin concentrations that did not include blanks should be viewed with caution. Our results suggest that pure catechin is only rarely present in C. maculosa bulk soils. Thus, although catechin may play a role in C. maculosa invasion, the infrequency of soil catechin that we determined in this study suggests that we cannot be as certain of its role as previous reports of high soil catechin concentrations suggested.

Measurement of technetium-99 in Marshall Islands soil samples by ICP-MS

PubMed

Tagami; Uchida; Hamilton; Robison

2000-07-01

Extraction techniques for recovery of technetium-99 (99Tc) for Inductively Coupled Plasma Mass Spectrometry (ICP-MS) measurements were evaluated using soil samples collected from the Marshall Islands. The results of three different extraction techniques were compared: (MI) acid leaching of Tc from ashed soil; (M2) acid leaching of Tc from raw dry soil; and (M3) Tc volatilization from ashed soil using a combustion apparatus. Total Tc recoveries varied considerably between the extraction techniques but each method yielded similar analytical results for 99Tc. Applications of these extraction techniques to a series of environmental samples and ICP-MS measurements have yielded first data on the 99Tc content of Marshall Islands soil samples contaminated with close-in radioactive fallout from nuclear weapons testing. The 99Tc activity concentration in the soil samples ranged between 0.1 and 1.1 mBq g(-1) dry weight (dw). The limit of detection for 99Tc by ICP-MS was 0.17 mBq per sample or 0.014 mBq g(-1) dw under standard operating conditions.

CO2 Radiocarbon Analysis to Quantify Organic Contaminant Degradation, MNA, and Engineered Remediation Approaches

DTIC Science & Technology

2014-12-18

carbon backbone). This may be analytically relevant where soil gas is sampled under anaerobic conditions. However, at the soil:air interface, methane is...of the ambient CO2 on-site coming from the fossil end-member (i.e. the contaminant). Sampling , processing and analysis of soil gas 14CO2 and 14CH4...gasoline service station having fuel-contaminated soil and groundwater. The SVE system ran for ~3 months prior to sampling . Soil gas and groundwater

Performance evaluation soil samples utilizing encapsulation technology

DOEpatents

Dahlgran, J.R.

1999-08-17

Performance evaluation soil samples and method of their preparation uses encapsulation technology to encapsulate analytes which are introduced into a soil matrix for analysis and evaluation by analytical laboratories. Target analytes are mixed in an appropriate solvent at predetermined concentrations. The mixture is emulsified in a solution of polymeric film forming material. The emulsified solution is polymerized to form microcapsules. The microcapsules are recovered, quantitated and introduced into a soil matrix in a predetermined ratio to form soil samples with the desired analyte concentration. 1 fig.

Performance evaluation soil samples utilizing encapsulation technology

DOEpatents

Dahlgran, James R.

1999-01-01

Performance evaluation soil samples and method of their preparation using encapsulation technology to encapsulate analytes which are introduced into a soil matrix for analysis and evaluation by analytical laboratories. Target analytes are mixed in an appropriate solvent at predetermined concentrations. The mixture is emulsified in a solution of polymeric film forming material. The emulsified solution is polymerized to form microcapsules. The microcapsules are recovered, quantitated and introduced into a soil matrix in a predetermined ratio to form soil samples with the desired analyte concentration.

Soil, Groundwater, Surface Water, and Sediments of Kennedy Space Center, Florida: Background Chemical and Physical Characteristics

NASA Technical Reports Server (NTRS)

Shmalzer, Paul A.; Hensley, Melissa A.; Mota, Mario; Hall, Carlton R.; Dunlevy, Colleen A.

2000-01-01

This study documented background chemical composition of soils, groundwater, surface; water, and sediments of Kennedy Space Center. Two hundred soil samples were collected, 20 each in 10 soil classes. Fifty-one groundwater wells were installed in 4 subaquifers of the Surficial Aquifer and sampled; there were 24 shallow, 16 intermediate, and 11 deep wells. Forty surface water and sediment samples were collected in major watershed basins. All samples were away from sites of known contamination. Samples were analyzed for organochlorine pesticides, aroclors, chlorinated herbicides, polycyclic aromatic hydrocarbons (PAH), total metals, and other parameters. All aroclors (6) were below detection in all media. Some organochlorine pesticides were detected at very low frequencies in soil, sediment, and surface water. Chlorinated herbicides were detected at very low frequencies in soil and sediments. PAH occurred in low frequencies in soiL, shallow groundwater, surface water, and sediments. Concentrations of some metals differed among soil classes, with subaquifers and depths, and among watershed basins for surface water but not sediments. Most of the variation in metal concentrations was natural, but agriculture had increased Cr, Cu, Mn, and Zn.

Chemical migration during soil water retention curve evaluation.

PubMed

Pires, Luiz F; Villanueva, Felipe C A; Dias, Nivea M P; Bacchi, Osny O Santos; Reichardt, Klaus

2011-09-01

Wetting and drying (W-D) cycles can induce important elemental migrations in soils. The main purpose of this work was to study the possible existence of soil chemical elemental migrations in samples submitted to repeated W-D cycles during evaluations of soil water retention curve (SWRC). The experimental measurements were carried out by Atomic Absorption Spectrometry (AAS) for Ca(2+), Mg(2+) and K(+) on samples of three different Brazilian tropical soils (Geric Ferralsol, Eutric Nitosol and Rhodic Ferralsol). Results demonstrate an increase in the electrical conductivity of the water extracted from the samples and significant losses of Ca(2+), Mg(2+) and K(+) during the applications of up to nine W-D cycles. It was also observed differences in SWRC for all soils when samples submitted to the application of several W-D cycles were compared with samples not submitted to it. These differences occurred at the region of both structural and textural pores. A possible explanation for these results could be the soil chemical migration during the sequences of W-D cycles, which can affect the soil structure development.

Hyperspectral analysis of clay minerals

NASA Astrophysics Data System (ADS)

Janaki Rama Suresh, G.; Sreenivas, K.; Sivasamy, R.

2014-11-01

A study was carried out by collecting soil samples from parts of Gwalior and Shivpuri district, Madhya Pradesh in order to assess the dominant clay mineral of these soils using hyperspectral data, as 0.4 to 2.5 μm spectral range provides abundant and unique information about many important earth-surface minerals. Understanding the spectral response along with the soil chemical properties can provide important clues for retrieval of mineralogical soil properties. The soil samples were collected based on stratified random sampling approach and dominant clay minerals were identified through XRD analysis. The absorption feature parameters like depth, width, area and asymmetry of the absorption peaks were derived from spectral profile of soil samples through DISPEC tool. The derived absorption feature parameters were used as inputs for modelling the dominant soil clay mineral present in the unknown samples using Random forest approach which resulted in kappa accuracy of 0.795. Besides, an attempt was made to classify the Hyperion data using Spectral Angle Mapper (SAM) algorithm with an overall accuracy of 68.43 %. Results showed that kaolinite was the dominant mineral present in the soils followed by montmorillonite in the study area.

Reconnaissance of Soil, Ground Water, and Plant Contamination at an Abandoned Oilfield-Service Site near Shawnee, Oklahoma, 2005-2006

USGS Publications Warehouse

Mashburn, Shana L.; Smith, S. Jerrod

2007-01-01

The U.S. Geological Survey, in cooperation with the Absentee Shawnee Tribe of Oklahoma, began a reconnaissance study of a site in Pottawatomie County, Oklahoma, in 2005 by testing soil, shallow ground water, and plant material for the presence of trace elements and semivolatile organic compounds. Chemical analysis of plant material at the site was investigated as a preliminary tool to determine the extent of contamination at the site. Thirty soil samples were collected from 15 soil cores during October 2005 and analyzed for trace elements and semivolatile organic compounds. Five small-diameter, polyvinyl-chloride-cased wells were installed and ground-water samples were collected during December 2005 and May 2006 and analyzed for trace elements and semivolatile organic compounds. Thirty Johnsongrass samples and 16 Coralberry samples were collected during September 2005 and analyzed for 53 constituents, including trace elements. Results of the soil, ground-water, and plant data indicate that the areas of trace element and semivolatile organic compound contamination are located in the shallow (A-horizon) soils near the threading barn. Most of the trace-element concentrations in the soils on the study site were either similar to or less than trace-element concentrations in background soils. Several trace elements and semivolatile organic compounds exceeded the U.S. Environmental Protection Agency, Region 6, Human Health Medium-Specific Screening Levels 2007 for Tap Water, Residential Soils, Industrial Indoor Soils, and Industrial Outdoor Soils. There was little or no correlation between the plant and soil sample concentrations and the plant and ground-water concentrations based on the current sample size and study design. The lack of correlation between trace-element concentrations in plants and soils, and plants and ground water indicate that plant sampling was not useful as a preliminary tool to assess contamination at the study site.

Duplex quantitative real-time PCR assay for the detection and discrimination of the eggs of Toxocara canis and Toxocara cati (Nematoda, Ascaridoidea) in soil and fecal samples.

PubMed

Durant, Jean-Francois; Irenge, Leonid M; Fogt-Wyrwas, Renata; Dumont, Catherine; Doucet, Jean-Pierre; Mignon, Bernard; Losson, Bertrand; Gala, Jean-Luc

2012-12-07

Toxocarosis is a zoonotic disease caused by Toxocara canis (T. canis) and/or Toxocara cati (T. cati), two worldwide distributed roundworms which are parasites of canids and felids, respectively. Infections of humans occur through ingestion of embryonated eggs of T. canis or T. cati, when playing with soils contaminated with dogs or cats feces. Accordingly, the assessment of potential contamination of these areas with these roundworms eggs is paramount. A duplex quantitative real-time PCR (2qPCR) targeting the ribosomal RNA gene internal transcribed spacer (ITS2) has been developed and used for rapid and specific identification of T. canis and T. cati eggs in fecal and soil samples. The assay was set up on DNA samples extracted from 53 adult worms including T. canis, T. cati, T. leonina, Ascaris suum (A. suum) and Parascaris equorum (P. equorum). The assay was used to assess the presence of T. cati eggs in several samples, including 12 clean soil samples spiked with eggs of either T. cati or A. suum, 10 actual soil samples randomly collected from playgrounds in Brussels, and fecal samples from cats, dogs, and other animals. 2qPCR results on dogs and cats fecal samples were compared with results from microscopic examination. 2qPCR assay allowed specific detection of T. canis and T. cati, whether adult worms, eggs spiked in soil or fecal samples. The 2qPCR limit of detection (LOD) in spiked soil samples was 2 eggs per g of soil for a turnaround time of 3 hours. A perfect concordance was observed between 2qPCR assay and microscopic examination on dogs and cats feces. The newly developed 2qPCR assay can be useful for high throughput prospective or retrospective detection of T.canis and/or T. cati eggs in fecal samples as well as in soil samples from playgrounds, parks and sandpits.

The effect of heavy metal concentration and soil pH on the abundance of selected microbial groups within ArcelorMittal Poland steelworks in Cracow.

PubMed

Lenart, Anna; Wolny-Koładka, Katarzyna

2013-01-01

The present study aimed to identify the effect of heavy metal concentration and soil pH on the abundance of the selected soil microorganisms within ArcelorMittal Poland steelworks, Cracow. The analysis included 20 soil samples, where the concentration of Fe, Zn, Cd, Pb, Ni, Cu, Mn, Cr and soil pH were evaluated together with the number of mesophilic bacteria, fungi, Actinomycetes and Azotobacter spp. In the majority of samples soil pH was alkaline. The limits of heavy metals exceeded in eight samples and in one sample, the concentration of Zn exceeded 31-fold. Chromium was the element which most significantly limited the number of bacteria and Actinomycetes.

The soiling of materials in the ambient atmosphere

NASA Astrophysics Data System (ADS)

Hamilton, R. S.; Mansfield, T. A.

Models describing the rate of soiling of exposed surfaces due to the deposition and accumulation of particulate matter from the atmosphere are reviewed. Samples of white painted wood were exposed for 110 days in the ambient atmosphere. Separate samples were sheltered and unsheltered from rainfall. Reflectance was measured daily. Results are compared with recently published studies in the U.S.A. (samples in the ambient atmosphere) and the U.K. (samples in a road tunnel). Experimental soiling rates were compared with predicted values. Existing models were satisfactory for predicting soiling in a tunnel but underestimated soiling in an ambient situation; a revised formulation is proposed for this situation. Rainfall generally produced a cleaning effect but redistribution of washed-off material could produce enhanced soiling.

A soil sampling reference site: the challenge in defining reference material for sampling.

PubMed

de Zorzi, Paolo; Barbizzi, Sabrina; Belli, Maria; Fajgelj, Ales; Jacimovic, Radojko; Jeran, Zvonka; Sansone, Umberto; van der Perk, Marcel

2008-11-01

In the frame of the international SOILSAMP project, funded and coordinated by the Italian Environmental Protection Agency, an agricultural area was established as a reference site suitable for performing soil sampling inter-comparison exercises. The reference site was characterized for trace element content in soil, in terms of the spatial and temporal variability of their mass fraction. Considering that the behaviour of long-lived radionuclides in soil can be expected to be similar to that of some stable trace elements and that the distribution of these trace elements in soil can simulate the distribution of radionuclides, the reference site characterised in term of trace elements, can be also used to compare the soil sampling strategies developed for radionuclide investigations.

Alaska Geochemical Database - Mineral Exploration Tool for the 21st Century - PDF of presentation

USGS Publications Warehouse

Granitto, Matthew; Schmidt, Jeanine M.; Labay, Keith A.; Shew, Nora B.; Gamble, Bruce M.

2012-01-01

The U.S. Geological Survey has created a geochemical database of geologic material samples collected in Alaska. This database is readily accessible to anyone with access to the Internet. Designed as a tool for mineral or environmental assessment, land management, or mineral exploration, the initial version of the Alaska Geochemical Database - U.S. Geological Survey Data Series 637 - contains geochemical, geologic, and geospatial data for 264,158 samples collected from 1962-2009: 108,909 rock samples; 92,701 sediment samples; 48,209 heavy-mineral-concentrate samples; 6,869 soil samples; and 7,470 mineral samples. In addition, the Alaska Geochemical Database contains mineralogic data for 18,138 nonmagnetic-fraction heavy mineral concentrates, making it the first U.S. Geological Survey database of this scope that contains both geochemical and mineralogic data. Examples from the Alaska Range will illustrate potential uses of the Alaska Geochemical Database in mineral exploration. Data from the Alaska Geochemical Database have been extensively checked for accuracy of sample media description, sample site location, and analytical method using U.S. Geological Survey sample-submittal archives and U.S. Geological Survey publications (plus field notebooks and sample site compilation base maps from the Alaska Technical Data Unit in Anchorage, Alaska). The database is also the repository for nearly all previously released U.S. Geological Survey Alaska geochemical datasets. Although the Alaska Geochemical Database is a fully relational database in Microsoft® Access 2003 and 2010 formats, these same data are also provided as a series of spreadsheet files in Microsoft® Excel 2003 and 2010 formats, and as ASCII text files. A DVD version of the Alaska Geochemical Database was released in October 2011, as U.S. Geological Survey Data Series 637, and data downloads are available at http://pubs.usgs.gov/ds/637/. Also, all Alaska Geochemical Database data have been incorporated into the interactive U.S. Geological Survey Mineral Resource Data web portal, available at http://mrdata.usgs.gov/.

Fit for purpose frozen tissue collections by RNA integrity number-based quality control assurance at the Erasmus MC tissue bank.

PubMed

Kap, Marcel; Oomen, Monique; Arshad, Shazia; de Jong, Bas; Riegman, Peter

2014-04-01

About 5000 frozen tissue samples are collected each year by the Erasmus Medical Center tissue bank. Two percent of these samples are randomly selected annually for RNA isolation and RNA Integrity Number (RIN) measurement. A similar quality assessment was conducted during centralization of a 20-year-old tissue collection from the cancer institute, a 15-year-old liver sample archive (-80°C), and a 13-year-old clinical pathology frozen biopsy archive (Liquid Nitrogen). Samples were divided into either high-quality (RIN ≥6.5) or low-quality overall categories, or into four "fit-for-purpose" quality groups: RIN <5: not reliable for demanding downstream analysis; 5 ≤RIN <6: suitable for RT-qPCR; 6 ≤RIN <8: suitable for gene array analysis; and RIN ≥8: suitable for all downstream techniques. In general, low RIN values were correlated with fatty, fibrous, pancreatic, or necrotic tissue. When the percentage of samples with RIN ≥6.5 is higher than 90%, the tissue bank performance is adequate. The annual 2011 quality control assessment showed that 90.3% (n=93) of all samples had acceptable RIN values; 97.4% (n=39) of the cancer institute collection had RIN values above 6.5; and 88.6% (n=123) of samples from the liver sample archive collection had RIN values higher than 6.5. As the clinical pathology biopsy collection contained only 58.8% (n=24) acceptable samples, the procurement protocols used for these samples needed immediate evaluation. When the distribution of RIN values of the different collections were compared, no significant differences were found, despite differences in average storage time and temperature. According to the principle of "fit-for-purpose" distribution, the vast majority of samples are considered good enough for most downstream techniques. In conclusion, an annual tissue bank quality control procedure provides useful information on tissue sample quality and sheds light on where and if improvements need to be made.

A survey of the occurrence of Bacillus anthracis in North American soils over two long-range transects and within post-Katrina New Orleans

USGS Publications Warehouse

Griffin, Dale W.; Petrosky, Terry; Morman, Suzette A.; Luna, Vicki A.

2009-01-01

Soil samples were collected along a north-south transect extending from Manitoba, Canada, to the US-Mexico border near El Paso, Texas in 2004 (104 samples), a group of sites within New Orleans, Louisiana following Hurricane Katrina in 2005 (19 samples), and a Gulf Coast transect extending from Sulphur, Louisiana, to DeFuniak Springs, Florida, in 2007 (38 samples). Samples were collected from the top 40 cm of soil and were screened for the presence of total Bacillus species and Bacillus anthracis (anthrax), specifically using multiplex-polymerase chain reaction (PCR). Using an assay with a sensitivity of ~170 equivalent colony-forming units (CFU) g-1 field moist soil, the prevalence rate of Bacillus sp./B. anthracis in the north-south transect and the 2005 New Orleans post-Katrina sample set were 20/5% and 26/26%, respectively. Prevalence in the 2007 Gulf Coast sample set using an assay with a sensitivity of ~4 CFU g-1 of soil was 63/0%. Individual transect-set data indicate a positive relation between occurrences of species and soil moisture or soil constituents (i.e., Zn and Cu content). The 2005 New Orleans post-Katrina data indicated that B. anthracis is readily detectable in Gulf Coast soils following flood events. The data also indicated that occurrence, as it relates to soil chemistry, may be confounded by flood-induced dissemination of germinated cells and the mixing of soil constituents for short temporal periods following an event.

A survey of the occurrence of Bacillus anthracis in North American soils over two long-range transects and within post-Katrina New Orleans

USGS Publications Warehouse

Griffin, Dale W.; Petrosky, T.; Morman, S.A.; Luna, V.A.

2009-01-01

Soil samples were collected along a north-south transect extending from Manitoba, Canada, to the US-Mexico border near El Paso, Texas in 2004 (104 samples), a group of sites within New Orleans, Louisiana following Hurricane Katrina in 2005 (19 samples), and a Gulf Coast transect extending from Sulphur, Louisiana, to DeFuniak Springs, Florida, in 2007 (38 samples). Samples were collected from the top 40 cm of soil and were screened for the presence of total Bacillus species and Bacillus anthracis (anthrax), specifically using multiplex-polymerase chain reaction (PCR). Using an assay with a sensitivity of ???170 equivalent colony-forming units (CFU) g-1 field moist soil, the prevalence rate of Bacillus sp./B. anthracis in the north-south transect and the 2005 New Orleans post-Katrina sample set were 20/5% and 26/26%, respectively. Prevalence in the 2007 Gulf Coast sample set using an assay with a sensitivity of ???4 CFU g-1 of soil was 63/0%. Individual transect-set data indicate a positive relation between occurrences of species and soil moisture or soil constituents (i.e., Zn and Cu content). The 2005 New Orleans post-Katrina data indicated that B. anthracis is readily detectable in Gulf Coast soils following flood events. The data also indicated that occurrence, as it relates to soil chemistry, may be confounded by flood-induced dissemination of germinated cells and the mixing of soil constituents for short temporal periods following an event.

Characterisation of a reference site for quantifying uncertainties related to soil sampling.

PubMed

Barbizzi, Sabrina; de Zorzi, Paolo; Belli, Maria; Pati, Alessandra; Sansone, Umberto; Stellato, Luisa; Barbina, Maria; Deluisa, Andrea; Menegon, Sandro; Coletti, Valter

2004-01-01

The paper reports a methodology adopted to face problems related to quality assurance in soil sampling. The SOILSAMP project, funded by the Environmental Protection Agency of Italy (APAT), is aimed at (i) establishing protocols for soil sampling in different environments; (ii) assessing uncertainties associated with different soil sampling methods in order to select the "fit-for-purpose" method; (iii) qualifying, in term of trace elements spatial variability, a reference site for national and international inter-comparison exercises. Preliminary results and considerations are illustrated.

Area of Concern (AOC) 314 Verification Survey at Former McClellan AFB, Sacramento, CA

DTIC Science & Technology

2015-03-31

also collected 22 soil samples from within AOC 314. Laboratory analysis revealed that the concentration of radium-226 (Ra-226) in 10 of the soil ...at least one sample that exceeded 2.0 pCi/g. The highest concentration of Ra-226 found in any of the soil samples was 25.8 pCi/g. Based on these...and ensure the potential health risk to future inhabitants is minimized. USAFSAM/OEC personnel also collected 22 soil samples from within AOC 314

The distribution of selected elements and minerals in soil of the conterminous United States

USGS Publications Warehouse

Woodruff, Laurel G.; Cannon, William F.; Smith, David; Solano, Federico

2015-01-01

In 2007, the U.S. Geological Survey initiated a low-density (1 site per 1600 km2, 4857 sites) geochemical and mineralogical survey of soil of the conterminous United States as part of the North American Soil Geochemical Landscapes Project. Three soil samples were collected, if possible, from each site; (1) a sample from a depth of 0 to 5 cm, (2) a composite of the soil A-horizon, and (3) a deeper sample from the soil C-horizon or, if the top of the C-horizon was at a depth greater than 100 cm, from a depth of approximately 80–100 cm. The < 2 mm fraction of each sample was analysed for a suite of 45 major and trace elements following near-total multi-acid digestion. The major mineralogical components in samples from the soil A- and C-horizons were determined by a quantitative X-ray diffraction method using Rietveld refinement. Sampling ended in 2010 and chemical and mineralogical analyses were completed in May 2013. Maps of the conterminous United States showing predicted element and mineral concentrations were interpolated from actual soil data for each soil sample type by an inverse distance weighted (IDW) technique using ArcGIS software. Regional- and national-scale map patterns for selected elements and minerals apparent in interpolated maps are described here in the context of soil-forming factors and possible human inputs. These patterns can be related to (1) soil parent materials, for example, in the distribution of quartz, (2) climate impacts, for example, in the distribution of feldspar and kaolinite, (3) soil age, for example, in the distribution of carbonate in young glacial deposits, and (4) possible anthropogenic loading of phosphorus (P) and lead (Pb) to surface soil. This new geochemical and mineralogical data set for the conterminous United States represents a major step forward from prior national-scale soil geochemistry data and provides a robust soil data framework for the United States now and into the future.

Laboratory Jet Erosion Tests on the Lower American River Soil Samples, Sacramento, CA- Phase 2

DTIC Science & Technology

2017-05-01

ER D C/ G SL T R- 17 -8 Laboratory Jet Erosion Tests on the Lower American River Soil Samples, Sacramento, CA – Phase 2 G eo te ch ni...Jet Erosion Tests on the Lower American River Soil Samples, Sacramento, CA – Phase 2 Johannes L. Wibowo and Bryant A. Robbins Geotechnical and...Appendix B: Soil Mechanics Data ........................................................................................................... 71

Determination of Picloram in Soil and Water by Reversed-Phase Liquid Chromatography

Treesearch

M.J.M. Wells; J.L. Michael; D.G. Neary

1984-01-01

A reversed-phase liquid chromatographic method is presneted for the determination of picloram in the parts per billion (ppb) range in soil, soil solution, and stream samples. Quanitification is effected by UV absorpation at 254 nm. Derivatization is not necessary. The method permits 92% ± 7.1 recovery from water samples and 61.8% ± 11.1 recovery from soil samples....

Sedimentation Time Measurements of Soil Particles by Light Scattering and Determination of Chromium, Lead, and Iron in Soil Samples via ICP

ERIC Educational Resources Information Center

Todebush, Patricia Metthe; Geiger, Franz M.

2005-01-01

The study of soil samples, using light scattering and Inductively Coupled Plasma spectrometry (ICP) to determine colloid sedimentation rates and the quantity of chromium, lead, and iron in the sample is described. It shows the physical and chemical behavior of solid components in soil, and how such pollutant binding colloid surfaces directly…

A survey on polycyclic aromatic hydrocarbon concentrations in soil in Chiang-Mai, Thailand

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amagai, Takashi; Takahashi, Yukari; Matsushita, Hidetsuru

Soil samples were collected at 30 sampling sites along roadsides in the city of Chiang-Mai, Thailand, in February 1996, and concentrations of 16 polycyclic aromatic hydrocarbons (PAHs) were determined. The distribution of PAH concentration in the soil samples was almost log-normal for all PAHs. Concentrations of pyrene (Py) and fluoranthene (Fluor) were the highest, followed by those of benzo[ghi]perylene and coronene (Cor). Since PAH concentrations were highest on the roadside where the traffic density was high, vehicles were the main determinants of PAH concentration in soil in Chiang-Mai. Significant correlations among PAH concentrations were found for almost all PAHs. PAHmore » profiles in the air were different from those in the soil. For example, relative benzo[a]pyrene (BaP) concentration in the soil was significantly lower than that in the air. Relative concentrations of Fluor, Py, chrysene, and Cor in the soil were considerably higher than those in the air, due presumably to their difference in photochemical reactivities and in sources. The sampling of soil has advantages relative to that of air: (1) collection of soil is easy; (2) it needs no special equipment and electricity; (3) it takes little time; and (4) it can be collected anywhere. Therefore PAH analysis in soil was useful as a proxy-screening tool for air pollution levels with consideration of compositional differences between soil and air samples.« less

To determine the slow shearing rate for consolidation drained shear box tests

NASA Astrophysics Data System (ADS)

Jamalludin, Damanhuri; Ahmad, Azura; Nordin, Mohd Mustaqim Mohd; Hashim, Mohamad Zain; Ibrahim, Anas; Ahmad, Fauziah

2017-08-01

Slope failures always occur in Malaysia especially during the rainy seasons. They cause damage to properties and fatalities. In this study, a total of 24 one dimensional consolidation tests were carried out on soil samples taken from 16 slope failures in Penang Island and in Baling, Kedah. The slope failures in Penang Island are within the granitic residual soil while in Baling, Kedah they are situated within the sedimentary residual soil. Most of the disturbed soil samples were taken at 100mm depth from the existing soil surface while some soil samples were also taken at 400, 700 and 1000mm depths from the existing soil surface. They were immediately placed in 2 layers of plastic bag to prevent moisture loss. Field bulk density tests were also carried out at all the locations where soil samples were taken. The field bulk density results were later used to re-compact the soil samples for the consolidation tests. The objective of the research is to determine the slow shearing rate to be used in consolidated drained shear box for residual soils taken from slope failures so that the effective shear strength parameters can be determined. One dimensional consolidation tests were used to determine the slow shearing rate. The slow shearing rate found in this study to be used in the consolidated drained shear box tests especially for Northern Malaysian residual soils was 0.286mm/minute.

Occurrence and species distribution of pathogenic Mucorales in unselected soil samples from France.

PubMed

Mousavi, B; Costa, J M; Arné, P; Guillot, J; Chermette, R; Botterel, F; Dannaoui, E

2018-04-01

Mucormycosis is a life-threatening invasive fungal disease that affects a variety of patient groups. Although Mucorales are mostly opportunistic pathogens originating from soil or decaying vegetation, there are currently few data on prevalence of this group of fungi in the environment. The aim of the present study was to assess the prevalence and diversity of species of Mucorales from soil samples collected in France. Two grams of soil were homogenized in sterile saline and plated on Sabouraud dextrose agar and RPMI agar supplemented with itraconazole or voriconazole. Both media contained chloramphenicol and gentamicin. The plates were incubated at 35 ± 2 °C and checked daily for fungal growth for a maximum of 7 d. Mucorales were subcultured for purity. Each isolate was identified phenotypically and molecular identification was performed by ITS sequencing. A total of 170 soil samples were analyzed. Forty-one isolates of Mucorales were retrieved from 38 culture-positive samples. Among the recovered isolates, 27 Rhizopus arrhizus, 11 Mucor circinelloides, one Lichtheimia corymbifera, one Rhizopus microsporus and one Cunninghamella bertholletiae were found. Positive soil samples came from cultivated fields but also from other types of soil such as flower beds. Mucorales were retrieved from samples obtained in different geographical regions of France. Voriconazole-containing medium improved the recovery of Mucorales compared with other media. The present study showed that pathogenic Mucorales are frequently recovered from soil samples in France. Species diversity should be further analyzed on a larger number of soil samples from different geographic areas in France and in other countries.

Lipid biomarkers in Holocene and glacial sediments from ancient Lake Ohrid (Macedonia, Albania)

NASA Astrophysics Data System (ADS)

Holtvoeth, J.; Vogel, H.; Wagner, B.; Wolff, G. A.

2010-11-01

Organic matter preserved in Lake Ohrid sediments originates from aquatic and terrestrial sources. Its variable composition reflects climate-controlled changes in the lake basin's hydrology and related organic matter export, i.e. changes in primary productivity, terrestrial plant matter input and soil erosion. Here, we present first results from lipid biomarker investigations of Lake Ohrid sediments from two near-shore settings: site Lz1120 near the southern shore, with low-lying lands nearby and probably influenced by river discharge, and site Co1202 which is close to the steep eastern slopes. Variable proportions of terrestrial n-alkanoic acids and n-alkanols as well as compositional changes of ω-hydroxy acids document differences in soil organic matter supply between the sites and during different climate stages (glacial, Holocene, 8.2 ka cooling event). Changes in the vegetation cover are suggested by changes in the dominant chain length of terrestrial n-alkanols. Effective microbial degradation of labile organic matter and in situ contribution of organic matter derived from the microbes themselves are both evident in the sediments. We found evidence for anoxic conditions within the photic zone by detecting epicholestanol and tetrahymanol from sulphur-oxidising phototrophic bacteria and bacterivorous ciliates and for the influence of a settled human community from the occurrence of coprostanol, a biomarker for human and animal faeces (pigs, sheep, goats), in an early Holocene sample. This study illustrates the potential of lipid biomarkers for future environmental reconstructions using one of Europe's oldest continental climate archives, Lake Ohrid.

Selected trace metals and organic compounds and bioavailability of selected organic compounds in soils, Hackberry Flat, Tillman County, Oklahoma, 1994-95

USGS Publications Warehouse

Becker, M.F.

1997-01-01

In 1995 the Oklahoma Department of Wildlife Conservation acquired a drained wetland in southwest Oklahoma known as Hackberry Flat. Following restoration by Wildlife Conservation the wetland will be used by migratory birds and waterfowl. If naturally occurring trace metals and residual organic compounds from agriculture and industry were present, they may have posed a potential biohazard and were a concern for Wildlife Conservation. The U. S. Geological Survey, in cooperation with Wildlife Conservation and the Oklahoma Geological Survey, examined the soils of Hackberry Flat to determine trace metal concentrations, presence of selected organic compounds, and the bioavailability of selected organic compounds in the soils. The purpose of this report is to present the data that establish the baseline concentrations of selected trace metals and organic compounds in the soils of Hackberry Flat prior to wetland restoration. Sampling and analysis were performed using two approaches. One was to collect soil samples and analyze the composition with standard laboratory practices. The second exposed composite soils samples to organic-free water and a semipermeable membrane device that mimics an organism and then analyzed the device. Ten soil samples were collected in 1994 to be analyzed for trace metals, organochlorine pesticides, and polychlorinated biphenyls. Soil samples tested for bioavailability of selected organic compounds were collected in 1995. Most of the 182 soil samples collected were from the center of every 40-acre quarter-quarter section owned by the Wildlife Conservation. The samples were grouped by geographical area with a maximum of 16 sample sites per group. Concentrations of most selected trace metals measured from soils in Hackberry Flat are within the range of mean concentrations measured in cultivated soils within the United States. Organochlorine pesticides, polychlorinated biphenyls, and polyaromatic hydrocarbons were not found at concentrations above the analytical detection levels and, if present, in the soil samples are at concentrations below the detection level of the analytical method used. Organochlorine pesticides, total polychlorinated biphenyls, and polyaromatic hydrocarbons were not detected in any of the semipermeable membrane devices at the analytical detection levels.

Planning Considerations Related to Collecting and Analyzing Samples of the Martian Soils

NASA Technical Reports Server (NTRS)

Liu, Yang; Mellon, Mike T.; Ming, Douglas W.; Morris, Richard V.; Noble, Sarah K.; Sullivan, Robert J.; Taylor, Lawrence A.; Beaty, David W.

2014-01-01

The Mars Sample Return (MSR) End-to-End International Science Analysis Group (E2E-iSAG [1]) established scientific objectives associ-ated with Mars returned-sample science that require the return and investigation of one or more soil samples. Soil is defined here as loose, unconsolidated materials with no implication for the presence or absence of or-ganic components. The proposed Mars 2020 (M-2020) rover is likely to collect and cache soil in addition to rock samples [2], which could be followed by future sample retrieval and return missions. Here we discuss key scientific consid-erations for sampling and caching soil samples on the proposed M-2020 rover, as well as the state in which samples would need to be preserved when received by analysts on Earth. We are seeking feedback on these draft plans as input to mission requirement formulation. A related planning exercise on rocks is reported in an accompanying abstract [3].

Geochemical and mineralogical data for soils of the conterminous United States

USGS Publications Warehouse

Smith, David B.; Cannon, William F.; Woodruff, Laurel G.; Solano, Federico; Kilburn, James E.; Fey, David L.

2013-01-01

In 2007, the U.S. Geological Survey initiated a low-density (1 site per 1,600 square kilometers, 4,857 sites) geochemical and mineralogical survey of soils of the conterminous United States as part of the North American Soil Geochemical Landscapes Project. Sampling and analytical protocols were developed at a workshop in 2003, and pilot studies were conducted from 2004 to 2007 to test and refine these recommended protocols. The final sampling protocol for the national-scale survey included, at each site, a sample from a depth of 0 to 5 centimeters, a composite of the soil A horizon, and a deeper sample from the soil C horizon or, if the top of the C horizon was at a depth greater than 1 meter, from a depth of approximately 80–100 centimeters. The <2-millimeter fraction of each sample was analyzed for a suite of 45 major and trace elements by methods that yield the total or near-total elemental content. The major mineralogical components in the samples from the soil A and C horizons were determined by a quantitative X-ray diffraction method using Rietveld refinement. Sampling in the conterminous United States was completed in 2010, with chemical and mineralogical analyses completed in May 2013. The resulting dataset provides an estimate of the abundance and spatial distribution of chemical elements and minerals in soils of the conterminous United States and represents a baseline for soil geochemistry and mineralogy against which future changes may be recognized and quantified. This report (1) describes the sampling, sample preparation, and analytical methods used; (2) gives details of the quality control protocols used to monitor the quality of chemical and mineralogical analyses over approximately six years; and (3) makes available the soil geochemical and mineralogical data in downloadable tables.

Quantitative passive soil vapor sampling for VOCs--part 1: theory.

PubMed

McAlary, Todd; Wang, Xiaomin; Unger, Andre; Groenevelt, Hester; Górecki, Tadeusz

2014-03-01

Volatile organic compounds are the primary chemicals of concern at many contaminated sites and soil vapor sampling and analysis is a valuable tool for assessing the nature and extent of contamination. Soil gas samples are typically collected by applying vacuum to a probe in order to collect a whole-gas sample, or by drawing gas through a tube filled with an adsorbent (active sampling). There are challenges associated with flow and vacuum levels in low permeability materials, and leak prevention and detection during active sample collection can be cumbersome. Passive sampling has been available as an alternative to conventional gas sample collection for decades, but quantitative relationships between the mass of chemicals sorbed, the soil vapor concentrations, and the sampling time have not been established. This paper presents transient and steady-state mathematical models of radial vapor diffusion to a drilled hole and considerations for passive sampler sensitivity and practical sampling durations. The results indicate that uptake rates in the range of 0.1 to 1 mL min(-1) will minimize the starvation effect for most soil moisture conditions and provide adequate sensitivity for human health risk assessment with a practical sampling duration. This new knowledge provides a basis for improved passive soil vapour sampler design.

The history of soil erosion: Interpreting historical sources, buried soils and colluvial sediments as archives of past soil erosion and human-environment interactions in the Longue Durée

NASA Astrophysics Data System (ADS)

Dotterweich, Markus

2015-04-01

Soil erosion threatens the environment and the sustainability of agricultural practices since the earliest societies started modifying their natural environment in the Neolithic. Almost all farming-based cultures in the world, from large civilizations to peasant groups on little islands, have suffered from soil erosion by water. The amounts of soil erosion varied largely through time and space, and extreme events have left a wide variety of imprints on the landscape over millennia. Eroded hillslopes and gullies, deposited sediments in sinks like lakes, footslopes, valleys, floodplains, and river deltas are geomorphic legacies that have been linked to changes in land use and climate by many studies during the last decades. However, a standardized analysis and interpretation of these geomorphic legacies is problematic because of the variety of methodological approaches and the nonlinearity between soil erosion, climate, and land use. Cascading effects, land use structures, soil management, soil conservation strategies, and long-term system changes have produced different signals over time. Historical records are crucial and an invaluable source to provide alternative proxies about soil erosion in the past. Direct observations of individual soil erosion events may restrict the deposition of a distinct sediment package to a certain time span. They also expand the range of alternative interpretations, particularly with respect to the long-term effects of soil erosion to ecosystem services and socioeconomic processes. However, historical records also need critical analyses regarding their origin, intention, and quality. They were often created in the context of personal interests or political issues rather than being based on scientific facts; and it is often unclear if they represent certain events, narratives, or vague assumptions. This presentation will present and discuss examples of geomorphic evidences and historical records of past soil erosion for the deciphering of human-environment interactions in the Longue Durée.

[Species composition and diversity of soil mesofauna in the 'Holy Hills' fragmentary tropical rain forest of Xishuangbanna, China].

PubMed

Yang, X; Sha, L

2001-04-01

The species composition and diversity of soil mesofauna were examined in fragmented dry tropical seasonal rainforest of tow 'Holy Hills' of Dai nationality, compared with the continuous moist tropical seasonal rain forest of Nature Reserve in Xishuangbanna area. 5 sample quadrats were selected along the diagonal of 20 m x 20 m sampling plot, and the samples of litterfall and 0-3 cm soil were collected from each 50 cm x 10 cm sample quadrat. Animals in soil sample were collected by using dry-funnel(Tullgren's), were identified to their groups according to the order. The H' index, D.G index and the pattern of relative abundance of species were used to compare the diversity of soil mesofauna. The results showed that the disturbance of vegetation and soil resulted by tropical rainforest fragmentation was the major factor affecting the diversity of soil mesofauna. Because the fragmented forest was intruded by some pioneer tree species and the "dry and warm" effect operated, this forest had more litterfall on the floor and more humus in the soil than the continuous moist rain forest. The soil condition with more soil organic matter, total N and P, higher pH value and lower soil bulk density became more favorable to the soil mesofauna. Therefore, the species richness, abundance and diversity of soil mesofauna in fragmented forests were higher than those in continuous forest, but the similarity of species composition in fragmented forest to the continuous forest was minimal. Soil mesofauna diversity in fragmented forests did not change with decreasing fragmented area, indicating that there was no species-area effect operation in this forest. The pattern of relative abundance of species in these forest soils was logarithmic series distribution.

Area G perimeter surface-soil and single-stage water sampling: Environmental surveillance for fiscal year 95. Progress report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Childs, M.; Conrad, R.

1997-09-01

ESH-19 personnel collected soil and single-stage water samples around the perimeter of Area G at Los Alamos National Laboratory (LANL) during FY 95 to characterize possible radionuclide movement out of Area G through surface water and entrained sediment runoff. Soil samples were analyzed for tritium, total uranium, isotopic plutonium, americium-241, and cesium-137. The single-stage water samples were analyzed for tritium and plutonium isotopes. All radiochemical data was compared with analogous samples collected during FY 93 and 94 and reported in LA-12986 and LA-13165-PR. Six surface soils were also submitted for metal analyses. These data were included with similar data generatedmore » for soil samples collected during FY 94 and compared with metals in background samples collected at the Area G expansion area.« less

Probing dissolved organic matter in the critical zone: a comparison between in situ sampling and aqueous soil extracts

NASA Astrophysics Data System (ADS)

Perdrial, J. N.; Perdrial, N.; Harpold, A. A.; Peterson, A. M.; Vasquez, A.; Chorover, J.

2011-12-01

Analyzing dissolved organic matter (DOM) of soil solution constitutes an integral activity in critical zone science as important insights to nutrient and carbon cycling and mineral weathering processes can be gained. Soil solution can be obtained by a variety of approaches such as by in situ zero-tension and tension samplers or by performing soil extracts in the lab. It is generally preferred to obtain soil solution in situ with the least amount of disturbance. However, in water limited environments, such as in southwestern US, in situ sampling is only possible during few hydrologic events and soil extracts are often employed. In order to evaluate the performance of different sampling approaches for OM analysis, results from aqueous soil extracts were compared with in situ samples obtained from suction cups and passive capillary wick samplers (PCAP's). Soil from an OA-horizon of mixed conifer forest Jemez River Basin Critical Zone Observatory (JRB-CZO) in NM was sampled twice and in situ samples from co-located suction cups and PCAPs were collected 7 times during the 2011 snowmelt period. Dissolved organic carbon and nitrogen concentrations (DOC and DN) as well as OM quality (FTIR, fluorescence spectroscopy and PARAFAC) were analyzed. The aqueous soil extracts (solid:solution = 1:5 mass basis) showed highest DOC and lowest DN concentrations whereas samples collected in-situ had lower DOC and higher DN concentrations. PARAFAC analysis using a four component model showed a dominance of fluorescence in region I and II (protein-like fluorescence) for samples collected in situ indicating the presence of more bio-molecules (proteins). In contrast, the dominant PARAFAC component of the soil extract was found in region 3 (fulvic acid-like fluorescence). FTIR analysis showed high intensity band at 1600 cm-1 in the case of the aqueous soil extract that correspond to asymmetric stretching of carboxyl groups. These preliminary results indicate that aqueous soil extracts likely lead to the underestimation of the amount of biomolecules and the overestimation of fulvic acid contents of soil solutions.

Linking spatial patterns of soil redistribution traced with 137Cs and soil nutrients in a Mediterranean mountain agroecosystem (NE Spain)

NASA Astrophysics Data System (ADS)

Quijano, Laura; Gaspar, Leticia; Navas, Ana

2016-04-01

Mediterranean mountain agroecosystems are prone to soil loss mainly due to the accelerated erosion as a consequence of human induced changes from agriculture and grazing practices over the last centuries and the climatic conditions (i.e. irregular and scarce precipitations and drought periods). Soil erosion leads to soil degradation inducing the loss of soil functions. The progressive decline of soil functions thereof soil quality is associated to a decrease of soil productivity and can threat the sustainability of cultivated soils. The use of fallout 137Cs as a soil movement tracer provides useful data to identify areas where loss and gain of 137Cs occurs and that of soil. This study aims to address soil movement and soil nutrient dynamics closely related to the status of soil degradation. A rain-fed cereal field (1.6 ha) representative of Mediterranean mountain agricultural landscapes (42°25'41''N 1°13'8''W) was selected to examine the effects of soil redistribution processes on the spatial variability of soil organic carbon (SOC) and nitrogen (SON) and their relationships with soil properties and topographic characteristics. From the hydrological point of view, the field is isolated due to the effect of landscape features and man-made structures. Climate is continental Mediterranean with an average annual rainfall of 500 mm and soils are Calcisols. The reference inventories of 137Cs and soil nutrients were established from 21 soil samples collected in nearby undisturbed areas under typical Mediterranean vegetation cover. A total of 156 bulk soil samples (30-50 cm depth) and 156 topsoil samples (5 cm) were collected on a 10 m grid. 137Cs and soil nutrients loss and gain areas were identified by comparing the reference inventories with the values of inventories at the sampling points. A new approach to characterize and measure active (ACF) and stable (SCF) carbon fraction contents by using a dry combustion method based on the oxidation temperature of carbon fractions to analyze the SOC pool dynamics is presented in this study. A detailed field topographic survey and mapping of the spatial variability of soil properties and nutrient contents from soil analyses displayed similar spatial patterns of 137Cs and soil nutrients that also were directly and significantly correlated (p≤0.01). As much as 70% of the surface of the study field had lower values of 137Cs inventory indicating a predominance of soil loss linked to a generalized loss of soil nutrients. SOC gain was found in less than 1% of the study field and there was a large loss of SON compared to the undisturbed reference site. Higher and significant (p≤0.01) contents of soil nutrients were found in topsoil samples than in the bulk ones. Furthermore, there was an enrichment of the relative contribution of ACF to total SOC in sampling points where there was a 137Cs gain in both bulk and topsoil samples. Understanding patterns of soil nutrients can be useful for developing and implementing land management strategies to preserve soil quality in Mediterranean agricultural areas.

BOREAS TE-5 Surface Meteorological and Radiation Data

NASA Technical Reports Server (NTRS)

Hall, Forrest G. (Editor); Curd, Shelaine (Editor); Ehleriinger, Jim; Brooks, J. Renee; Flanagan, Larry

2000-01-01

The BOREAS TE-5 team collected measurements in the NSA and SSA on gas exchange, gas composition, and tree growth. Measurements of meteorological data, including air and soil temperature, RH, and PPFD, were 30-minute intervals during the 1994 IFCs at various sites in the BOREAS NSA and SSA. The data are provided in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Dose-Response Analysis of RNA-Seq Profiles in Archival Formalin-fixed paraffin-embedded (FFPE) Samples

EPA Science Inventory

Formalin-fixed paraffin-embedded (FFPE) samples provide a vast untapped resource for chemical safety and translational science. To date, genomic profiling of FFPE samples has been limited by poor RNA quality and inconsistent results with limited utility in dose-response assessmen...

It's Time to Develop a New "Draft Test Protocol" for a Mars Sample Return Mission (or Two....)

NASA Astrophysics Data System (ADS)

Rummel, J. D.

2018-04-01

A Mars Sample Return (MSR) will involve analysis of those samples in containment, including their safe receiving, handling, testing, and archiving. With an MSR planned for the end of the next decade, it is time to update the existing MSR protocol.

A methodological study of genome-wide DNA methylation analyses using matched archival formalin-fixed paraffin embedded and fresh frozen breast tumors.

PubMed

Espinal, Allyson C; Wang, Dan; Yan, Li; Liu, Song; Tang, Li; Hu, Qiang; Morrison, Carl D; Ambrosone, Christine B; Higgins, Michael J; Sucheston-Campbell, Lara E

2017-02-28

DNA from archival formalin-fixed and paraffin embedded (FFPE) tissue is an invaluable resource for genome-wide methylation studies although concerns about poor quality may limit its use. In this study, we compared DNA methylation profiles of breast tumors using DNA from fresh-frozen (FF) tissues and three types of matched FFPE samples. For 9/10 patients, correlation and unsupervised clustering analysis revealed that the FF and FFPE samples were consistently correlated with each other and clustered into distinct subgroups. Greater than 84% of the top 100 loci previously shown to differentiate ER+ and ER- tumors in FF tissues were also FFPE DML. Weighted Correlation Gene Network Analyses (WCGNA) grouped the DML loci into 16 modules in FF tissue, with ~85% of the module membership preserved across tissue types. Restored FFPE and matched FF samples were profiled using the Illumina Infinium HumanMethylation450K platform. Methylation levels (β-values) across all loci and the top 100 loci previously shown to differentiate tumors by estrogen receptor status (ER+ or ER-) in a larger FF study, were compared between matched FF and FFPE samples using Pearson's correlation, hierarchical clustering and WCGNA. Positive predictive values and sensitivity levels for detecting differentially methylated loci (DML) in FF samples were calculated in an independent FFPE cohort. FFPE breast tumors samples show lower overall detection of DMLs versus FF, however FFPE and FF DMLs compare favorably. These results support the emerging consensus that the 450K platform can be employed to investigate epigenetics in large sets of archival FFPE tissues.

PCR detection of Burkholderia multivorans in water and soil samples.

PubMed

Peeters, Charlotte; Daenekindt, Stijn; Vandamme, Peter

2016-08-12

Although semi-selective growth media have been developed for the isolation of Burkholderia cepacia complex bacteria from the environment, thus far Burkholderia multivorans has rarely been isolated from such samples. Because environmental B. multivorans isolates mainly originate from water samples, we hypothesized that water rather than soil is its most likely environmental niche. The aim of the present study was to assess the occurrence of B. multivorans in water samples from Flanders (Belgium) using a fast, culture-independent PCR assay. A nested PCR approach was used to achieve high sensitivity, and specificity was confirmed by sequencing the resulting amplicons. B. multivorans was detected in 11 % of the water samples (n = 112) and 92 % of the soil samples (n = 25) tested. The percentage of false positives was higher for water samples compared to soil samples, showing that the presently available B. multivorans recA primers lack specificity when applied to the analysis of water samples. The results of the present study demonstrate that B. multivorans DNA is commonly present in soil samples and to a lesser extent in water samples in Flanders (Belgium).

Ecological distribution of Spirillum lipoferum Beijerinck.

PubMed

Dobereiner, J; Marriel, I E; Nery, M

1976-10-01

A survey in various countries revealed that the N2-fixing Spirillum lipoferum Beijerinck is a very common root and soil inhabitant in the tropics. More than half of the grass root and soil samples collected in tropical countries (four African countries and Brazil) contained abundant S. lipoferum populations, while less than 10% of the samples collected in temperate South Brazil, Kenya, and the U.S.A. contained the organism. There is a pronounced vegetation effect. Panicum maximum seems the most favorable among the forage grasses, while few positive samples were found under virgin tropical forest. Legume roots contained less S. lipoferum than adjacent soils. More than 80% of the samples from cereal roots (maize, sorghum, wheat, and rye) grown in fields fertilized with PK and Mo, in Rio de Janeiro State, were positive. Maize and sorghum grown under similar conditions in Wisconsin contained less than 10% of positive samples, but when maize fields were inoculated 90% of the root samples contained S. lipoferum. Alluvial soils were more favorable than eroded hill soils. Occurrence in soil was strongly pH-dependent with a pH around 7, being optimal (correlation coefficient r = 0.90). Sporadic occurrence was observed even in soils with pH 4.8. Surface-sterilized P. maximum roots collected from soils with pH ranging from 4.8 to 7.2 contained high S. lipoferum numbers which did not correlate with soil pH (r = 0.41). Amendment with malate of acid soils was not very effective in increasing nitrogenase (N2-ase) activity, but in two soils with pH above 6.4, high N2-ase activity was obtained after 16 to 48 h of incubation. In two soils from a temperate climate region, inoculation with S. lipoferum increased N2-ase activity produced through malate amendment.

DITT: a computer program for Data Interpretation for Torsional Tests

USGS Publications Warehouse

Chen, Albert T.F.

1979-01-01

Measurements of the helium concentration of soil samples collected and stored in Vacutainer-brand evacuated glass tubes show that Vacutainers are reliable containers for soil collection. Within the limits of reproducibility, helium content of soils appears to be independent of variations in soil temperature, barometric pressure, and quantity of soil moisture present in the sample.

Evaluation of different approaches for identifying optimal sites to predict mean hillslope soil moisture content

NASA Astrophysics Data System (ADS)

Liao, Kaihua; Zhou, Zhiwen; Lai, Xiaoming; Zhu, Qing; Feng, Huihui

2017-04-01

The identification of representative soil moisture sampling sites is important for the validation of remotely sensed mean soil moisture in a certain area and ground-based soil moisture measurements in catchment or hillslope hydrological studies. Numerous approaches have been developed to identify optimal sites for predicting mean soil moisture. Each method has certain advantages and disadvantages, but they have rarely been evaluated and compared. In our study, surface (0-20 cm) soil moisture data from January 2013 to March 2016 (a total of 43 sampling days) were collected at 77 sampling sites on a mixed land-use (tea and bamboo) hillslope in the hilly area of Taihu Lake Basin, China. A total of 10 methods (temporal stability (TS) analyses based on 2 indices, K-means clustering based on 6 kinds of inputs and 2 random sampling strategies) were evaluated for determining optimal sampling sites for mean soil moisture estimation. They were TS analyses based on the smallest index of temporal stability (ITS, a combination of the mean relative difference and standard deviation of relative difference (SDRD)) and based on the smallest SDRD, K-means clustering based on soil properties and terrain indices (EFs), repeated soil moisture measurements (Theta), EFs plus one-time soil moisture data (EFsTheta), and the principal components derived from EFs (EFs-PCA), Theta (Theta-PCA), and EFsTheta (EFsTheta-PCA), and global and stratified random sampling strategies. Results showed that the TS based on the smallest ITS was better (RMSE = 0.023 m3 m-3) than that based on the smallest SDRD (RMSE = 0.034 m3 m-3). The K-means clustering based on EFsTheta (-PCA) was better (RMSE <0.020 m3 m-3) than these based on EFs (-PCA) and Theta (-PCA). The sampling design stratified by the land use was more efficient than the global random method. Forty and 60 sampling sites are needed for stratified sampling and global sampling respectively to make their performances comparable to the best K-means method (EFsTheta-PCA). Overall, TS required only one site, but its accuracy was limited. The best K-means method required <8 sites and yielded high accuracy, but extra soil and terrain information is necessary when using this method. The stratified sampling strategy can only be used if no pre-knowledge about soil moisture variation is available. This information will help in selecting the optimal methods for estimation the area mean soil moisture.

Magnetic properties of alluvial soils polluted with heavy metals

NASA Astrophysics Data System (ADS)

Dlouha, S.; Petrovsky, E.; Boruvka, L.; Kapicka, A.; Grison, H.

2012-04-01

Magnetic properties of soils, reflecting mineralogy, concentration and grain-size distribution of Fe-oxides, proved to be useful tool in assessing the soil properties in terms of various environmental conditions. Measurement of soil magnetic properties presents a convenient method to investigate the natural environmental changes in soils as well as the anthropogenic pollution of soils with several risk elements. The effect of fluvial pollution with Cd, Cu, Pb and Zn on magnetic soil properties was studied on highly contaminated alluvial soils from the mining/smelting district (Příbram; CZ) using a combination of magnetic and geochemical methods. The basic soil characteristics, the content of heavy metals, oxalate, and dithionite extractable iron were determined in selected soil samples. Soil profiles were sampled using HUMAX soil corer and the magnetic susceptibility was measured in situ, further detailed magnetic analyses of selected distinct layers were carried out. Two types of variations of magnetic properties in soil profiles were observed corresponding to indentified soil types (Fluvisols, and Gleyic Fluvisols). Significantly higher values of topsoil magnetic susceptibility compared to underlying soil are accompanied with high concentration of heavy metals. Sequential extraction analysis proved the binding of Pb, Zn and Cd in Fe and Mn oxides. Concentration and size-dependent parameters (anhysteretic and isothermal magnetization) were measured on bulk samples in terms of assessing the origin of magnetic components. The results enabled to distinguish clearly topsoil layers enhanced with heavy metals from subsoil samples. The dominance of particles with pseudo-single domain behavior in topsoil and paramagnetic/antiferromagnetic contribution in subsoil were observed. These measurements were verified with room temperature hysteresis measurement carried out on bulk samples and magnetic extracts. Thermomagnetic analysis of magnetic susceptibility measured on magnetic extracts indicated the presence of magnetite/maghemite in the uppermost layers, and strong mineralogical transformation of iron oxyhydroxides during heating. Magnetic techniques give valuable information about the soil Fe oxides, which are useful for investigation of the environmental effects in soil. Key words: magnetic methods, Fe oxides, pollution, alluvial soils.

DATA QUALITY OBJECTIVES FOR SELECTING WASTE SAMPLES FOR BENCH-SCALE REFORMER TREATABILITY STUDIES

DOE Office of Scientific and Technical Information (OSTI.GOV)

BANNING DL

2011-02-11

This document describes the data quality objectives to select archived samples located at the 222-S Laboratory for Bench-Scale Reforming testing. The type, quantity, and quality of the data required to select the samples for Fluid Bed Steam Reformer testing are discussed. In order to maximize the efficiency and minimize the time to treat Hanford tank waste in the Waste Treatment and Immobilization Plant, additional treatment processes may be required. One of the potential treatment processes is the fluidized bed steam reformer. A determination of the adequacy of the fluidized bed steam reformer process to treat Hanford tank waste is required.more » The initial step in determining the adequacy of the fluidized bed steam reformer process is to select archived waste samples from the 222-S Laboratory that will be used in a bench scale tests. Analyses of the selected samples will be required to confirm the samples meet the shipping requirements and for comparison to the bench scale reformer (BSR) test sample selection requirements.« less

Laboratory measurements of nitric oxide release from forest soil with a thick organic layer under different understory types

NASA Astrophysics Data System (ADS)

Bargsten, A.; Falge, E.; Pritsch, K.; Huwe, B.; Meixner, F. X.

2010-05-01

Nitric oxide (NO) plays an important role in the photochemistry of the troposphere. NO from soil contributes up to 40% to the global budget of atmospheric NO. Soil NO emissions are primarily caused by biological activity (nitrification and denitrification), that occurs in the uppermost centimeter of the soil, a soil region often characterized by high contents of organic material. Most studies of NO emission potentials to date have investigated mineral soil layers. In our study we sampled soil organic matter under different understories (moss, grass, spruce and blueberries) in a humid mountainous Norway spruce forest plantation in the Fichtelgebirge (Germany). We performed laboratory incubation and flushing experiments using a customized chamber technique to determine the response of net potential NO flux to physical and chemical soil conditions (water content and temperature, bulk density, particle density, pH, C/N ratio, organic C, soil ammonium, soil nitrate). Net potential NO fluxes (in terms of mass of N) from soil samples taken under different understories ranged from 1.7-9.8 ng m-2 s-1 (soil sampled under grass and moss cover), 55.4-59.3 ng m-2 s-1 (soil sampled under spruce cover), and 43.7-114.6 ng m-2 s-1 (soil sampled under blueberry cover) at optimum water content and a soil temperature of 10 °C. The water content for optimum net potential NO flux ranged between 0.76 and 0.8 gravimetric soil moisture for moss covered soils, between 1.0 and 1.1 for grass covered soils, 1.1 and 1.2 for spruce covered soils, and 1.3 and 1.9 for blueberry covered soils. Effects of soil physical and chemical characteristics on net potential NO flux were statistically significant (0.01 probability level) only for NH4+. Therefore, as an alternative explanation for the differences in soil biogenic NO emission we consider more biological factors like understory vegetation type, amount of roots, and degree of mycorrhization; they have the potential to explain the observed differences of net potential NO fluxes.

Geochemical and mineralogical maps for soils of the conterminous United States

USGS Publications Warehouse

Smith, David B.; Cannon, William F.; Woodruff, Laurel G.; Solano, Federico; Ellefsen, Karl J.

2014-01-01

The U.S. Geological Survey began sampling in 2007 for a low-density (1 site per 1,600 square kilometers, 4,857 sites) geochemical and mineralogical survey of soils in the conterminous United States as part of the North American Soil Geochemical Landscapes Project. The sampling protocol for the national-scale survey included, at each site, a sample from a depth of 0 to 5 centimeters, a composite of the soil A horizon, and a deeper sample from the soil C horizon or, if the top of the C horizon was at a depth greater than 1 meter, a sample from a depth of approximately 80–100 centimeters. The <2-millimeter fraction of each sample was analyzed for a suite of 45 major and trace elements by methods that yield the total or near-total elemental content. The major mineralogical components in the samples from the soil A and C horizons were determined by a quantitative X-ray diffraction method using Rietveld refinement. Sampling in the conterminous United States was completed in 2010, with chemical and mineralogical analyses completed in May 2013. The resulting data set provides an estimate of the abundance and spatial distribution of chemical elements and minerals in soils of the conterminous United States and represents a baseline for soil geochemistry and mineralogy against which future changes may be recognized and quantified. This report releases geochemical and mineralogical maps along with a histogram, boxplot, and empirical cumulative distribution function plot for each element or mineral.

Urease activity in different soils of Egypt.

PubMed

el-Shinnawi, M M

1978-01-01

Samples from two depths (0--15 and 15--30 cm) of five Egyptian soils: sandy, calcareous, fertile alluvial, saline alluvial, and alkali alluvial were tested for urease activity. Samples were treated with farmyard manure at rates of 0 and 0.5% C, and moisture at levels of 50, 65, and 80% of the water holding capacity. The studied Egyptian soils showed different activities of urease. Decreases in the values were shown by depth of sampling and varied in their intensities according to soil type, except for saline soil which revealed an opposite trend by the higher activity of its sub-surface layer. Order of activity was the following: fertile, saline, alkali, calcareous, and sandy soil. Farmyard manure slightly increased the activity of the enzyme. Incubation of moistened samples revealed that the optimum moisture content was 50% of W.H.C. for the tested soils, except for saline which showed best results at 65% of W.H.C.

POLYBROMINATED DIPHENYL ETHERS IN US SOILS

EPA Science Inventory

Chemical analysis of thirty-three soil samples from 15 US states reveals Polybrominated Diphenyl Ethers (PBDEs), in every sample.PBDE concentrations rangefrom 0.09 to 1200 parts per billion by mass. These data are the first analysis of soil concentrations of PBDEs in soils from a...

An improved technique for taking hydraulic conductivity cores from forest soils

Treesearch

Gerald M. Aubertin

1969-01-01

Describes a large-diameter, heavy-duty soil sampler that makes it possible to obtain long, relatively undisturbed sample columns from stony, root-filled forest soils. The resultant samples include the roots, root channels, stones, and macro-voids common to forested soils.

Studying The Spectral Shape And The X-ray/uv Variability Of Active Galactic Nuclei With Data From Swift And Xmm Archives

NASA Astrophysics Data System (ADS)

Turriziani, Sara

2011-01-01

Many efforts have been made in understanding the underlying origin of variability in Active Galactic Nuclei (AGN), but at present they could give still no conclusive answers. Since a deeper knowledge of variability will enable to understand better the accretion process onto supermassive black holes, I built the first ensemble struction function analysis of the X-ray variability of samples of quasars with data from Swift and XMM-Newton archives in order to study the average properties of their variability. Moreover, it is known that UV and X-ray luminosities of quasars are correlated and recent studies quantified this relation across 5 orders of magnitude. In this context, I presents results on the X-ray/UV ratio from simultaneous observations in UV and X-ray bands of a sample of quasars with data from XMM-Newton archive. Lastly, I will present a complete sample of Swift/SDSS faint blazars and other non-thermal dominated AGNs. I used this sample to calculate the general statistical properties of faint blazars and radio galaxies and in particular their Radio LogN-LogS with fluxes down to 10 mJy, in order to gain knowledge on the contribution to Cosmic Microwave Background (CMB) and gamma-ray background radiation from the faint tail of the radio population. I acknowledge financial support through Grant ASI I/088/06/0.

Dissolved organic C and N pools in soils amended with composted and thermally-dried sludge as affected by soil tillage systems and sampling depth

NASA Astrophysics Data System (ADS)

García-Gil, Juan Carlos; Soler-Rovira, Pedro Angel; García López de Sa, Esther; Polo, Alfredo

2013-04-01

Soil tillage practices exert a significant influence on the dynamic of soluble organic C and N pools, affecting nutrient cycling in agricultural systems by enhancing its mineralization through microbial activities or stabilization in soil microaggregates, which contribute to mitigate greenhouse gases emissions. The objective of the present research was to determine the influence of three different soil management systems (moldboard plowing, chisel and no-tillage) and the application of composted sludge (CS) and thermally-dried sewage sludge (TSS) obtained from wastewater treatment processes on dissolved organic C (water-soluble organic C -WSOC-, carbohydrates, phenolic compounds) and soluble N (total-N, NH4+, NO3-) pools in a long-term field experiment (27 years) conducted on a sandy-loam soil at the experimental station "La Higueruela" (40° 03'N, 4° 24'W) under semi-arid conditions. Both organic amendments were applied at a rate of 30 tonnes per hectare prior to tillage practices. Unamended soils were used as control for each tillage system. Soil sampling was performed two months after tillage practices at the following depths for each treatment: 0-10 cm, 10-20 cm and 20-30 cm. Results obtained for unamended soils showed that no-tillage management increased total-N, NH4+ and NO3- contents at the 0-10 cm depth samples, meanwhile WSC and carbohydrates contents were larger at 20-30 cm depth samples in both moldboard and no-tillage plots. CS and TSS-amended soils presented a general increase in soluble C and N compounds, being significantly higher in TSS-amended soils, as TSS contains a great amount of labile organic C and N substrates due to the lack of stabilization treatment. TSS-amended soils under no-tillage and chisel plowing showed larger N, NH4+ and NO3- content at the 0-10 cm samples, meanwhile moldboard management exhibited larger NH4+ and NO3- content at 10-20 and 20-30 cm samples, possibly due to the incorporation of TSS at deeper depths (20-40 cm). CS and TSS-amended soils in no-tillage system showed the largest content of organic C pools at 0-10 cm depth samples due to less soil disturbance and the input of organic substrates with CS and TSS on soil surface. CS and TSS-amended soils under chisel plowing exhibited similar contents of soluble organic C pools at 10-20 and 20-30 cm depth samples and only TSS-amended soils increased significantly WSOC content at 0-10 cm samples. Similarly, contents of WSOC and carbohydrates in moldboard plowing were distributed more uniformly throughout the soil profile due to the turnover of soil and CS and TSS amendments into the plow layer. Acknowledgements: this research was supported by the Spanish CICYT, Project no. CTM2011-25557.

Characterization of polycyclic aromatic hydrocarbons in soil close to secondary copper and aluminum smelters.

PubMed

Hu, Jicheng; Wu, Jing; Zha, Xiaoshuo; Yang, Chen; Hua, Ying; Wang, Ying; Jin, Jun

2017-04-01

A total of 35 surface soil samples around two secondary copper smelters and one secondary aluminum smelter were collected and analyzed for 16 USEPA priority polycyclic aromatic hydrocarbons (PAHs). The concentrations of PAHs were highest when the soil sample sites were closest to the secondary copper smelters. And, a level gradient of PAHs was observed in soil samples according to the distance from two secondary copper smelters, respectively. The results suggested that PAH concentrations in surrounding soils may be influenced by secondary copper smelters investigated, whereas no such gradient was observed in soils around the secondary aluminum smelter. Further analysis revealed that PAH patterns in soil samples also showed some difference between secondary copper and aluminum smelter, which may be attributed to the difference in their fuel and smelting process. PAH patterns and diagnostic ratios indicated that biomass burning may be also an important source of PAHs in the surrounding soil in addition to the emissions from the plants investigated.

Spatial Variation of Soil Lead in an Urban Community Garden: Implications for Risk-Based Sampling.

PubMed

Bugdalski, Lauren; Lemke, Lawrence D; McElmurry, Shawn P

2014-01-01

Soil lead pollution is a recalcitrant problem in urban areas resulting from a combination of historical residential, industrial, and transportation practices. The emergence of urban gardening movements in postindustrial cities necessitates accurate assessment of soil lead levels to ensure safe gardening. In this study, we examined small-scale spatial variability of soil lead within a 15 × 30 m urban garden plot established on two adjacent residential lots located in Detroit, Michigan, USA. Eighty samples collected using a variably spaced sampling grid were analyzed for total, fine fraction (less than 250 μm), and bioaccessible soil lead. Measured concentrations varied at sampling scales of 1-10 m and a hot spot exceeding 400 ppm total soil lead was identified in the northwest portion of the site. An interpolated map of total lead was treated as an exhaustive data set, and random sampling was simulated to generate Monte Carlo distributions and evaluate alternative sampling strategies intended to estimate the average soil lead concentration or detect hot spots. Increasing the number of individual samples decreases the probability of overlooking the hot spot (type II error). However, the practice of compositing and averaging samples decreased the probability of overestimating the mean concentration (type I error) at the expense of increasing the chance for type II error. The results reported here suggest a need to reconsider U.S. Environmental Protection Agency sampling objectives and consequent guidelines for reclaimed city lots where soil lead distributions are expected to be nonuniform. © 2013 Society for Risk Analysis.

Rapid detection of soils contaminated with heavy metals and oils by laser induced breakdown spectroscopy (LIBS).

PubMed

Kim, Gibaek; Kwak, Jihyun; Kim, Ki-Rak; Lee, Heesung; Kim, Kyoung-Woong; Yang, Hyeon; Park, Kihong

2013-12-15

A laser induced breakdown spectroscopy (LIBS) coupled with the chemometric method was applied to rapidly discriminate between soils contaminated with heavy metals or oils and clean soils. The effects of the water contents and grain sizes of soil samples on LIBS emissions were also investigated. The LIBS emission lines decreased by 59-75% when the water content increased from 1.2% to 7.8%, and soil samples with a grain size of 75 μm displayed higher LIBS emission lines with lower relative standard deviations than those with a 2mm grain size. The water content was found to have a more pronounced effect on the LIBS emission lines than the grain size. Pelletizing and sieving were conducted for all samples collected from abandoned mining areas and military camp to have similar water contents and grain sizes before being analyzed by the LIBS with the chemometric analysis. The data show that three types of soil samples were clearly discerned by using the first three principal components from the spectral data of soil samples. A blind test was conducted with a 100% correction rate for soil samples contaminated with heavy metals and oil residues. Copyright © 2013 Elsevier B.V. All rights reserved.

[Using ultraviolet-visible ( UV-Vis) absorption spectrum to estimate the dissolved organic matter (DOM) concentration in water, soils and sediments of typical water-level fluctuation zones of the Three Gorges Reservoir areas].

PubMed

Li, Lu-lu; Jiang, Tao; Lu, Song; Yan, Jin-long; Gao, Jie; Wei, Shi-qiang; Wang, Ding-yong; Guo, Nian; Zhao, Zhena

2014-09-01

Dissolved organic matter (DOM) is a very important component in terrestrial ecosystem. Chromophoric dissolved organic matter (CDOM) is a significant constituent of DOM, which can be measured by ultraviolet-visible (UV-Vis) absorption spectrum. Thus the relationship between CDOM and DOM was investigated and established by several types of models including single-wavelength model, double-wavelength model, absorption spectrum slope (S value) model and three-wavelength model, based on the UV-Vis absorption coefficients of soil and sediment samples (sampled in July of 2012) and water samples (sampled in November of 2012) respectively. The results suggested that the three-wavelength model was the best for fitting, and the determination coefficients of water, soil and sediment data were 0. 788, 0. 933 and 0. 856, respectively. Meanwhile, the nominal best model was validated with the UV-Vis data of 32 soil samples and 36 water samples randomly collected in 2013, showing the RRMSE and MRE were 16. 5% and 16. 9% respectively for soil DOM samples, 10. 32% and 9. 06% respectively for water DOM samples, which further suggested the prediction accuracy was higher in water DOM samples as compared with that in soil DOM samples.

The Global Streamflow Indices and Metadata Archive (GSIM) - Part 1: The production of a daily streamflow archive and metadata

NASA Astrophysics Data System (ADS)

Do, Hong Xuan; Gudmundsson, Lukas; Leonard, Michael; Westra, Seth

2018-04-01

This is the first part of a two-paper series presenting the Global Streamflow Indices and Metadata archive (GSIM), a worldwide collection of metadata and indices derived from more than 35 000 daily streamflow time series. This paper focuses on the compilation of the daily streamflow time series based on 12 free-to-access streamflow databases (seven national databases and five international collections). It also describes the development of three metadata products (freely available at https://doi.pangaea.de/10.1594/PANGAEA.887477): (1) a GSIM catalogue collating basic metadata associated with each time series, (2) catchment boundaries for the contributing area of each gauge, and (3) catchment metadata extracted from 12 gridded global data products representing essential properties such as land cover type, soil type, and climate and topographic characteristics. The quality of the delineated catchment boundary is also made available and should be consulted in GSIM application. The second paper in the series then explores production and analysis of streamflow indices. Having collated an unprecedented number of stations and associated metadata, GSIM can be used to advance large-scale hydrological research and improve understanding of the global water cycle.

Alchemy in the underworld - recent progress and future potential of organic geochemistry applied to speleothems.

NASA Astrophysics Data System (ADS)

Blyth, Alison

2016-04-01

Speleothems are well used archives for chemical records of terrestrial environmental change, and the integration of records from a range of isotopic, inorganic, and organic geochemical techniques offers significant power in reconstructing both changes in past climates and identifying the resultant response in the overlying terrestrial ecosystems. The use of organic geochemistry in this field offers the opportunity to recover new records of vegetation change (via biomarkers and compound specific isotopes), temperature change (via analysis of glycerol dialkyl glycerol tetraethers, a compound group derived from microbes and varying in structure in response to temperature and pH), and changes in soil microbial behaviour (via combined carbon isotope analysis). However, to date the use of organic geochemical techniques has been relatively limited, due to issues relating to sample size, concerns about contamination, and unanswered questions about the origins of the preserved organic matter and rates of transport. Here I will briefly review recent progress in the field, and present a framework for the future research needed to establish organic geochemical analysis in speleothems as a robust palaeo-proxy approach.

Soil contamination in landfills: a case study of a landfill in Czech Republic

NASA Astrophysics Data System (ADS)

Adamcová, D.; Vaverková, M. D.; Bartoň, S.; Havlíček, Z.; Břoušková, E.

2016-02-01

A phytotoxicity test was determined to assess ecotoxicity of landfill soil. Sinapis alba L. was used as a bioindicator of heavy metals. Soil samples 1-8, which were taken from the landfill body, edge of the landfill body, and its vicinity meet the limits for heavy metals Co, Cd, Pb, and Zn specified in the applicable legislation. Hg and Mn threshold values are not established in legislation, but values have been determined for the needs of the landfill operator. For heavy metals Cr, Cu, and Ni sample 2 exceeded the threshold values, which attained the highest values of all the samples tested for Cr, Cu, and Ni. For Cr and Ni the values were several times higher than values of the other samples. The second highest values for Cr, Cu, and Ni showed sample 6 and 7. Both samples exceeded the set limits. An increase in plant biomass was observed in plants growing on plates with soil samples, but no changes in appearance, slow growth, or necrotic lesions appeared. Ecotoxicity tests show that tested soils (concentration of 50 %) collected from the landfill body, edge of the landfill body, and its vicinity reach high percentage values of germination capacity of seeds of Sinapis alba L. (101-137 %). At a concentration of 25 %, tested soil samples exhibit lower values of germination capacity - in particular samples 3 to 8 - yet the seed germination capacity in all eight samples of tested soils ranges between 86 and 137 %.

Soil contaminations in landfill: a case study of the landfill in Czech Republic

NASA Astrophysics Data System (ADS)

Adamcová, D.; Vaverková, M. D.; Bartoň, S.; Havlíček, Z.; Břoušková, E.

2015-10-01

Phytotoxicity test was determined to assess ecotoxicity of landfill soil. Sinapis alba L. was used as heavy metals bioindicator. Soil samples 1-8, which were taken from the landfill body, edge of the landfill body and its vicinity meet the limits for heavy metals Co, Cd, Pb, and Zn specified in the applicable legislation. Hg and Mn threshold values are not established in legislation, but values have been determined for the needs of the landfill operator. For heavy metals Cr, Cu, and Ni sample 2 exceeded the threshold values, which attained the highest values of all the samples tested for Cr, Cu and Ni. For Cr and Ni the values were several times higher than values of the other samples. The second highest values for Cr, Cu, and Ni showed sample 6 and 7. Both samples exceeded the set limits. An increase in plant biomass was observed in plants growing on plates with soil samples, but no changes in appearance, slow growth or necrotic lesions appeared. Ecotoxicity tests show that tested soils (concentration of 50 %) collected from the landfill body, edge of the landfill body and its vicinity reach high percentage values of germination capacity of seeds of Sinapis alba L. (101-137 %). At a concentration of 25 %, tested soil samples exhibit lower values of germination capacity; in particular samples 3 to 8, yet the seed germination capacity in all 8 samples of tested soils range between 86 and 137 %.

Implications of the field sampling procedure of the LUCAS Topsoil Survey for uncertainty in soil organic carbon concentrations.

NASA Astrophysics Data System (ADS)

Lark, R. M.; Rawlins, B. G.; Lark, T. A.

2014-05-01

The LUCAS Topsoil survey is a pan-European Union initiative in which soil data were collected according to standard protocols from 19 967 sites. Any inference about soil variables is subject to uncertainty due to different sources of variability in the data. In this study we examine the likely magnitude of uncertainty due to the field-sampling protocol. The published sampling protocol (LUCAS, 2009) describes a procedure to form a composite soil sample from aliquots collected to a depth of between approximately 15-20. A v-shaped hole to the target depth is cut with a spade, then a slice is cut from one of the exposed surfaces. This methodology gives rather less control of the sampling depth than protocols used in other soil and geochemical surveys, this may be a substantial source of variation in uncultivated soils with strong contrasts between an organic-rich A-horizon and an underlying B-horizon. We extracted all representative profile descriptions from soil series recorded in the memoir of the 1:250 000-scale map of Northern England (Soil Survey of England and Wales, 1984) where the base of the A-horizon is less than 20 cm below the surface. The Soil Associations in which these 14 series are significant members cover approximately 17% of the area of Northern England, and are expected to be the mineral soils with the largest organic content. Soil Organic Carbon content and bulk density were extracted for the A- and B-horizons, along with the thickness of the horizons. Recorded bulk density, or prediction by a pedotransfer function, were also recorded. For any proposed angle of the v-shaped hole, the proportions of A- and B-horizon in the resulting sample may be computed by trigonometry. From the bulk density and SOC concentration of the horizons, the SOC concentration of the sample can be computed. For each Soil Series we drew 1000 random samples from a trapezoidal distribution of angles, with uniform density over the range corresponding to depths 15-20 cm and zero density for angles corresponding to depths larger than 21 cm or less than 14 cm. We computed the corresponding variance of sample SOC contents. We found that the variance in SOC determinations attributable to variation in sample depth for these uncultivated soils was of the same order of magnitude as the estimate of the subsampling + analytical variance component (both on a log scale) that we previously computed for soils in the UK (Rawlins et al., 2009). It seems unnecessary to accept this source of uncertainty, given the effort undertaken to reduce the analytical variation which is no larger (and often smaller) than this variation due to the field protocol. If pan-European soil monitoring is to be based on the LUCAS Topsoil survey, as suggested by an initial report, uncertainty could be reduced if the sampling depth was specified to a unique depth, rather than the current depth range. LUCAS. 2009. Instructions for Surveyors. Technical reference document C-1: General implementation, Land Cover and Use, Water management, Soil, Transect, Photos. European Commission, Eurostat. Rawlins, B.G., Scheib, A.J., Lark, R.M. & Lister, T.R. 2009. Sampling and analytical plus subsampling variance components for five soil indicators observed at regional scale. European Journal of Soil Science 60, 740-747

Total mercury, methylmercury, and selected elements in soils of the Fishing Brook watershed, Hamilton County, New York, and the McTier Creek watershed, Aiken County, South Carolina, 2008

USGS Publications Warehouse

Woodruff, Laurel G.; Cannon, William F.; Knightes, Christopher D.; Chapelle, Francis H.; Bradley, Paul M.; Burns, Douglas A.; Brigham, Mark E.; Lowery, Mark A.

2010-01-01

Mercury is an element of on-going concern for human and aquatic health. Mercury sequestered in upland and wetland soils represents a source that may contribute to mercury contamination in sensitive ecosystems. An improved understanding of mercury cycling in stream ecosystems requires identification and quantification of mercury speciation and transport dynamics in upland and wetland soils within a watershed. This report presents data for soils collected in 2008 from two small watersheds in New York and South Carolina. In New York, 163 samples were taken from multiple depths or soil horizons at 70 separate locations near Fishing Brook, located in Hamilton County. At McTier Creek, in Aiken County, South Carolina, 81 samples from various soil horizons or soil depths were collected from 24 locations. Sample locations within each watershed were selected to characterize soil geochemistry in distinct land-cover compartments. Soils were analyzed for total mercury, selenium, total and carbonate carbon, and 42 other elements. A subset of the samples was also analyzed for methylmercury.

Application of Terahertz Radiation to Soil Measurements: Initial Results

PubMed Central

Dworak, Volker; Augustin, Sven; Gebbers, Robin

2011-01-01

Developing soil sensors with the possibility of continuous online measurement is a major challenge in soil science. Terahertz (THz) electromagnetic radiation may provide the opportunity for the measurement of organic material density, water content and other soil parameters at different soil depths. Penetration depth and information content is important for a functional soil sensor. Therefore, we present initial research on the analysis of absorption coefficients of four different soil samples by means of THz transmission measurements. An optimized soil sample holder to determine absorption coefficients was used. This setup improves data acquisition because interface reflections can be neglected. Frequencies of 340 GHz to 360 GHz and 1.627 THz to 2.523 THz provided information about an existing frequency dependency. The results demonstrate the potential of this THz approach for both soil analysis and imaging of buried objects. Therefore, the THz approach allows different soil samples to be distinguished according to their different absorption properties so that relations among soil parameters may be established in future. PMID:22163737

An evaluation of different soil washing solutions for remediating arsenic-contaminated soils.

PubMed

Wang, Yiwen; Ma, Fujun; Zhang, Qian; Peng, Changsheng; Wu, Bin; Li, Fasheng; Gu, Qingbao

2017-04-01

Soil washing is a promising way to remediate arsenic-contaminated soils. Most research has mostly focused on seeking efficient extractants for removing arsenic, but not concerned with any changes in soil properties when using this technique. In this study, the removal of arsenic from a heavily contaminated soil employing different washing solutions including H 3 PO 4 , NaOH and dithionite in EDTA was conducted. Subsequently, the changes in soil physicochemical properties and phytotoxicity of each washing technique were evaluated. After washing with 2 M H 3 PO 4 , 2 M NaOH or 0.1 M dithionite in 0.1 M EDTA, the soil samples' arsenic content met the clean-up levels stipulated in China's environmental regulations. H 3 PO 4 washing decreased soil pH, Ca, Mg, Al, Fe, and Mn concentrations but increased TN and TP contents. NaOH washing increased soil pH but decreased soil TOC, TN and TP contents. Dithionite in EDTA washing reduced soil TOC, Ca, Mg, Al, Fe, Mn and TP contents. A drastic color change was observed when the soil sample was washed with H 3 PO 4 or 0.1 M dithionite in 0.1 M EDTA. After adjusting the soil pH to neutral, wheat planted in the soil sample washed by NaOH evidenced the best growth of all three treated soil samples. These results will help with selecting the best washing solution when remediating arsenic-contaminated soils in future engineering applications. Copyright © 2017 Elsevier Ltd. All rights reserved.

Isotopic characteristics of canopies in simulated leaf assemblages

NASA Astrophysics Data System (ADS)

Graham, Heather V.; Patzkowsky, Mark E.; Wing, Scott L.; Parker, Geoffrey G.; Fogel, Marilyn L.; Freeman, Katherine H.

2014-11-01

The geologic history of closed-canopy forests is of great interest to paleoecologists and paleoclimatologists alike. Closed canopies have pronounced effects on local, continental and global rainfall and temperature patterns. Although evidence for canopy closure is difficult to reconstruct from the fossil record, the characteristic isotope gradients of the ;canopy effect; could be preserved in leaves and proxy biomarkers. To assess this, we employed new carbon isotopic data for leaves collected in diverse light environments within a deciduous, temperate forest (Maryland, USA) and for leaves from a perennially closed canopy, moist tropical forest (Bosque Protector San Lorenzo, Panamá). In the tropical forest, leaf carbon isotope values range 10‰, with higher δ13Cleaf values occurring both in upper reaches of the canopy, and with higher light exposure and lower humidity. Leaf fractionation (Δleaf) varied negatively with height and light and positively with humidity. Vertical 13C enrichment in leaves largely reflects changes in Δleaf, and does not trend with δ13C of CO2 within the canopy. At the site in Maryland, leaves express a more modest δ13C range (∼6‰), with a clear trend that follows both light and leaf height. Using a model we simulate leaf assemblage isotope patterns from canopy data binned by elevation. The re-sampling (bootstrap) model determined both the mean and range of carbon isotope values for simulated leaf assemblages ranging in size from 10 to over 1000 leaves. For the tropical forest data, the canopy's isotope range is captured with 50 or more randomly sampled leaves. Thus, with a sufficient number of fossil leaves it is possible to distinguish isotopic gradients in an ancient closed canopy forest from those in an open forest. For very large leaf assemblages, mean isotopic values approximate the δ13C of carbon contributed by leaves to soil and are similar to observed δ13Clitter values at forested sites within Panamá, including the site where leaves were sampled. The model predicts a persistent ∼1‰ difference in δ13Clitter for the two sites which is consistent with higher water availability in the tropical forests. This work provides a new framework for linking contemporary ecological observations to the geochemical record using flux-weighted isotope data and lends insights to the effect of forest architecture on organic and isotopic records of ancient terrestrial ecosystems. How many leaves from a litter assemblage are necessary to distinguish the isotopic gradient characteristics of canopy closure? Are mean δ13Cleaf values for a litter assemblage diagnostic of a forest biome? Can we predict the δ13C values of cumulative litter, soil organic matter, and organic carbon in sedimentary archives using litter flux and isotope patterns in canopies? We determined the δ13C range and mean for different sized assemblages of leaves sampled from data for each forest. We re-sampled very high numbers of leaves in order to estimate the isotopic composition of cumulative carbon delivered to soils as litter, and compared these results to available data from forest soils. Modeled leaf and soil organic carbon isotope patterns in this study offer insights to how forest structure can be derived from carbon isotope measurements of fossil leaves, as well as secondary material - such as teeth, hair, paleosol carbonates, or organic soil carbon (van der Merwe and Medina, 1989; Koch, 1998; Secord et al., 2008; Levin et al., 2011).Distinct climate and seasonal difference in the Panamá and Maryland, USA forests are reflected in their canopy isotope gradients. In the tropical forest of Panamá, leaves are produced throughout the year within a canopy that is both extensively and persistently closed (Leigh, 1975; Lowman and Wittman, 1996). In the temperate forest of Maryland leaves are produced during the spring when canopy conditions are relatively open (Korner and Basler, 2010).

Laboratory and Airborne BRDF Analysis of Vegetation Leaves and Soil Samples

NASA Technical Reports Server (NTRS)

Georgiev, Georgi T.; Gatebe, Charles K.; Butler, James J.; King, Michael D.

2008-01-01

Laboratory-based Bidirectional Reflectance Distribution Function (BRDF) analysis of vegetation leaves, soil, and leaf litter samples is presented. The leaf litter and soil samples, numbered 1 and 2, were obtained from a site located in the savanna biome of South Africa (Skukuza: 25.0degS, 31.5degE). A third soil sample, number 3, was obtained from Etosha Pan, Namibia (19.20degS, 15.93degE, alt. 1100 m). In addition, BRDF of local fresh and dry leaves from tulip tree (Liriodendron tulipifera) and acacia tree (Acacia greggii) were studied. It is shown how the BRDF depends on the incident and scatter angles, sample size (i.e. crushed versus whole leaf,) soil samples fraction size, sample status (i.e. fresh versus dry leaves), vegetation species (poplar versus acacia), and vegetation s biochemical composition. As a demonstration of the application of the results of this study, airborne BRDF measurements acquired with NASA's Cloud Absorption Radiometer (CAR) over the same general site where the soil and leaf litter samples were obtained are compared to the laboratory results. Good agreement between laboratory and airborne measured BRDF is reported.

Neighborhood size of training data influences soil map disaggregation

USDA-ARS?s Scientific Manuscript database

Soil class mapping relies on the ability of sample locations to represent portions of the landscape with similar soil types; however, most digital soil mapping (DSM) approaches intersect sample locations with one raster pixel per covariate layer regardless of pixel size. This approach does not take ...

The wettability of selected organic soils in Poland

NASA Astrophysics Data System (ADS)

Całka, A.; Hajnos, M.

2009-04-01

The wettability was measured in the laboratory by means of two methods: Water Drop Penetration Time (WDPT) test and Thin Column Wicking (TCW) method. WDPT is fast and simple method and was used to investigate potential water repellency of analyzed samples. TCW is an indirect method and was used to determine contact angles and surface free energy components. The measurement was performed in horizontal teflon chambers for thin-layer chromatography, adapted for tubes 10 cm long. The experiment was carried out on muck soils (samples were taken from two levels of soil profile: 0-20 cm and 20-40 cm) and peat soils. There were two types of peats: low-moor peats and high moor peats. Samples of low-moor peats were taken from level 25-75 cm (alder peat) and 75-125cm (sedge peat) and 25-75 cm (peloid peat). Samples of high moor peats from level 25-175 cm (sphagnum peat) and 175-225 cm (sphagnum peat with Eriophorum). There was found no variability in persistence of potential water repellency but there were differences in values of contact angles of individual soil samples. Both muck and peat samples are extremely water repellent soils. Water droplets persisted on the surface of soils for more than 24 hours. Contact angles and surface free energy components for all samples were differentiated. Ranges of water contact angles for organic soils are from 27,54o to 96,50o. The highest values of contact angles were for sphagnum peats, and the lowest for muck soil from 20-40 cm level. It means, that there are differences in wettability between these samples. Muck soil is the best wettable and sphagnum peats is the worst wettable soil. If the content of organic compounds in the soil exceeds 40% (like in peats), the tested material displays only dispersion-type interactions. Therefore for peat soils, the technique of thin column wicking could only be used to determine the dispersive component γiLW. For muck soils it was also determined electron-acceptor (Lewis acid) γ+ and electron-donor (Lewis base) γ- surface free energy components. The authors gratefully acknowledge the Ministry of Science and Higher Education for financial support of this work (grant No. N N310 149335).

Dust emissions of organic soils observed in the field and laboratory

NASA Astrophysics Data System (ADS)

Zobeck, T. M.; Baddock, M. C.; Guo, Z.; Van Pelt, R.; Acosta-Martinez, V.; Tatarko, J.

2011-12-01

According to the U.S. Soil Taxonomy, Histosols (also known as organic soils) are soils that are dominated by organic matter (>20% organic matter) in half or more of the upper 80 cm. These soils, when intensively cropped, are subject to wind erosion resulting in loss in crop productivity and degradation of soil, air, and water quality. Estimating wind erosion on Histosols has been determined by USDA-Natural Resources Conservation Service as a critical need for the Wind Erosion Prediction System (WEPS) model. WEPS has been developed to simulate wind erosion on agricultural land in the US, including soils with organic soil material surfaces. However, additional field measurements are needed to calibrate and validate estimates of wind erosion of organic soils using WEPS. In this study, we used a field portable wind tunnel to generate suspended sediment (dust) from agricultural surfaces for soils with a range of organic contents. The soils were tilled and rolled to provide a consolidated, friable surface. Dust emissions and saltation were measured using an isokinetic vertical slot sampler aspirated by a regulated suction source. Suspended dust was collected on filters of the dust slot sampler and sampled at a frequency of once every six seconds in the suction duct using a GRIMM optical particle size analyzer. In addition, bulk samples of airborne dust were collected using a sampler specifically designed to collect larger dust samples. The larger dust samples were analyzed for physical, chemical, and microbiological properties. In addition, bulk samples of the soils were tested in a laboratory wind tunnel similar to the field wind tunnel and a laboratory dust generator to compare field and laboratory results. For the field wind tunnel study, there were no differences between the highest and lowest organic content soils in terms of their steady state emission rate under an added abrader flux, but the soil with the mid-range of organic matter had less emission by one third. In the laboratory wind tunnel, samples with the same ratio of erodible to non-erodible aggregates as the field soils were abraded and dust emissions were observed with the same sampling system as used in the field wind tunnel. In the dust generator, 5 gm samples < 8 mm diameter of each organic soil were rotated in a 50 cm long tube and the dust generated was observed with the GRIMM during a 20 minute run. Comparisons of the field dust emission rates with the laboratory results will be presented.

Changes in Soil Carbon Turnover after Five Years of Bioenergy Cropping Systems from a Long-Term Incubation Experiment and Radiocarbon Measurements.

NASA Astrophysics Data System (ADS)

Szymanski, L. M.; Sanford, G. R.; Heckman, K. A.; Jackson, R. D.; Marin-Spiotta, E.

2016-12-01

In the face of climate change, the global production of bioenergy crops has increased in response to policies calling for non-fossil energy sources as a means to mitigate rising atmospheric carbon (C) concentrations. To provide overall C sequestration benefits, identifying biomass crops that can maintain or enhance soil resources is desirable for sustainable bioenergy production. The objective of our study was to compare the effects of four bioenergy cropping systems on SOM dynamics in two agricultural soils: Mollisols at the University of Wisconsin Agricultural Research Station in Arlington, Wisconsin and Alfisols at Kellogg Biological Station in Hickory Corners, Michigan, USA. We used fresh soils collected in 2013 and archived soils collected in 2008 to measure differences among biofuel crops after 5 years of management. Using a 365-day laboratory soil incubation and radiocarbon measurements of bulk soil and respired C, we separated soils into three SOM pools and determined their corresponding turnover times. Total soil C respired from surface soils increased in the order: mixed species perennials > monoculture perennials > monoculture annuals. More C was associated with the active fraction in the sandy loam Alfisol and with the slow-cycling fraction in the silt loam Mollisol. Radiocarbon content of respired CO2 did not differ between corn and switchgrass, but did differ between 2008 and 2013. The respiration of more radiocarbon-depleted C after 5 years of cultivation may be due to an initial flux of young C following tillage in 2008 or to depletion of labile plant inputs with continued harvest. All bioenergy cropping systems lost soil C after 5 years. Monoculture perennial switchgrass systems did not provide significant C sequestration benefits, as expected, compared to monoculture annual corn systems. Bioenergy crop land-use change affects soil C dynamics, with implications for assessing C costs associated with biofuel production.

Calibration of Noah soil hydraulic property parameters using surface soil moisture from SMOS and basin-wide in situ observations

USDA-ARS?s Scientific Manuscript database

Soil hydraulic properties can be retrieved from physical sampling of soil, via surveys, but this is time consuming and only as accurate as the scale of the sample. Remote sensing provides an opportunity to get pertinent soil properties at large scales, which is very useful for large scale modeling....

NHEXAS PHASE I MARYLAND STUDY--METALS IN SOIL ANALYTICAL RESULTS

EPA Science Inventory

The Metals in Soil data set contains analytical results for measurements of up to 4 metals in 277 soil samples over 75 households. Composite samples were obtained from up to 24 locations around the outside of the specific residence and combined into a single sample. The primary...

NHEXAS PHASE I MARYLAND STUDY--PESTICIDES IN SOIL ANALYTICAL RESULTS

EPA Science Inventory

The Pesticides in Soil data set contains analytical results for measurements of up to 9 pesticides in 60 soil samples over 41 households. Composite samples were obtained from up to 24 locations around the outside of the specific residence and combined into a single sample. Only...

Sampling depth confounds soil acidification outcomes

USDA-ARS?s Scientific Manuscript database

In the northern Great Plains (NGP) of North America, surface sampling depths of 0-15 or 0-20 cm are suggested for testing soil characteristics such as pH. However, acidification is often most pronounced near the soil surface. Thus, sampling deeper can potentially dilute (increase) pH measurements an...

Determination of secondary electron emission characteristics of lunar soil samples

NASA Technical Reports Server (NTRS)

Gold, T.; Baron, R. L.; Bilson, E.

1979-01-01

A procedure is described for the determination of the 'apparent crossover voltage', i.e. the value of the primary (bombarding) electron energy at which an insulating sample surface changes the average sign of its charge. This apparent crossover point is characteristic of the secondary emission properties of insulating powders such as the lunar soil samples. Lunar core samples from well-defined, distinct soil layers are found to differ significantly in their secondary emission properties. This observation supports the suggestion that soil layers were deposited by an electrostatic transport process.

A survey of lead contamination in soil along Interstate 880, Alameda County, California.

PubMed

Teichman, J; Coltrin, D; Prouty, K; Bir, W A

1993-09-01

This study was undertaken to determine the levels of lead in soils taken from yards of homes in close proximity to a major freeway. Soils were collected from the yards of homes in communities adjacent to the freeway and within a 1-mile radius. Samples were analyzed using U.S. Environmental Protection Agency (EPA) methods and atomic absorption instrumentation. Ten percent of the samples were split and sent to a second laboratory for quality control. The possibility of lead-based paint contributing to the contamination was eliminated by sampling more than 20 feet from the homes. The soils closest to the highway showed lead levels exceeding California's and EPA's criteria for hazardous waste. A stratified sample of the depth of contamination in soils was also undertaken. Previously identified "hot spots" (soils with lead levels exceeding 500 ppm in the top 0.75 inch) were core sampled. Results indicated 90% of the subsurface samples contained lead exceeding the surface contaminations. This may be attributed to decades of urban lead-laden dust deposition. As the use of leaded gasolines have diminished in the past decade, the uppermost layers of soil/dust contained lower amounts of lead.

Investigation of the copper contents in vineyard soil, grape must and wine and the relationship among them in the Huaizhuo Basin Region, China: A preliminary study.

PubMed

Sun, Xiangyu; Ma, Tingting; Yu, Jing; Huang, Weidong; Fang, Yulin; Zhan, Jicheng

2018-02-15

The copper contents in vineyard soil, grape must and wine and the relationship among them in the Huaizhuo Basin Region, China, were investigated. The results showed that the copper pollution status in vineyard soils, grapes and wines in the investigated area in China is under control, with only 4 surface soil (0-20cm) samples over maximum residue limits (MRL) and no grape or wine samples over MRL. Different vineyards, grape varieties, vine ages, and training systems all significantly influenced the copper contents in the vineyard soils, grape and wines. Additionally, the copper levels in the vineyard soils, grapes and wines all had some correlation. In wine samples, the copper contents ranged from 0.52 to 663μg/L, which is only approximately one percent the level found in grapes and one ten-thousandth that found in soils. Of the wine samples, red wines showed a significantly higher copper content than white wines, while in the red/white grape and soil samples, no significant differences were observed. Copyright © 2017 Elsevier Ltd. All rights reserved.

Determining photon energy absorption parameters for different soil samples

PubMed Central

Kucuk, Nil; Tumsavas, Zeynal; Cakir, Merve

2013-01-01

The mass attenuation coefficients (μs) for five different soil samples were measured at 661.6, 1173.2 and 1332.5 keV photon energies. The soil samples were separately irradiated with 137Cs and 60Co (370 kBq) radioactive point gamma sources. The measurements were made by performing transmission experiments with a 2″ × 2″ NaI(Tl) scintillation detector, which had an energy resolution of 7% at 0.662 MeV for the gamma-rays from the decay of 137Cs. The effective atomic numbers (Zeff) and the effective electron densities (Neff) were determined experimentally and theoretically using the obtained μs values for the soil samples. Furthermore, the Zeff and Neff values of the soil samples were computed for the total photon interaction cross-sections using theoretical data over a wide energy region ranging from 1 keV to 15 MeV. The experimental values of the soils were found to be in good agreement with the theoretical values. Sandy loam and sandy clay loam soils demonstrated poor photon energy absorption characteristics. However, clay loam and clay soils had good photon energy absorption characteristics. PMID:23179375

PIXE analysis of sand and soil from Ulaanbaatar and Karakurum, Mongolia

NASA Astrophysics Data System (ADS)

Markwitz, A.; Barry, B.; Shagjjamba, D.

2008-09-01

Twenty-one sand and soil samples were collected at the surface from 22 to 25 June 2007 at sampling sites from Ulaanbaatar to Karakurum, Mongolia. The sand samples were collected from constantly changing sand dunes which may still contain salt from prehistoric oceans. The dry sand and soil samples were processed for PIXE and PIGE analyses. A clear division between soils and sand become apparent in the silicon results. Concentrations of all bulk elements in human habitation samples and of Si, Al, K and Fe in dry lake/flood plain samples are similar to those in the soils and sands. Among elements which could be regarded as being at trace concentrations the average S concentration in the soils is 0.9 g kg-1 whereas it is not detected in the sand samples. Zinc and Cu concentrations are both higher in the soils than the sands and are strongly correlated. A surprising presence of uranium at a concentration of 350 mg kg-1 was detected in the PIXE measurement on one of the dry lake samples. Gamma spectrometry confirmed the presence of U in this sample and also at a lower level in a sample from the lake shore, but in none of the other samples. Further, the gamma spectrometry showed that 238U decay products were present only at a level corresponding to about 3 mg kg-1 U for a system in radioactive equilibrium, a figure which is typical for U in the earth's crust. Disequilibria between 238U and its decay products occur naturally but such a high degree of separation at high concentration would be unique if confirmed. PIXE and PIGE measurements of these samples highlight the difficulty in correlating trace element measurements with occurrence of indicators of sea salt in air particulate samples.

Rapid identification of oil-contaminated soils using visible near-infrared diffuse reflectance spectroscopy.

PubMed

Chakraborty, Somsubhra; Weindorf, David C; Morgan, Cristine L S; Ge, Yufeng; Galbraith, John M; Li, Bin; Kahlon, Charanjit S

2010-01-01

In the United States, petroleum extraction, refinement, and transportation present countless opportunities for spillage mishaps. A method for rapid field appraisal and mapping of petroleum hydrocarbon-contaminated soils for environmental cleanup purposes would be useful. Visible near-infrared (VisNIR, 350-2500 nm) diffuse reflectance spectroscopy (DRS) is a rapid, nondestructive, proximal-sensing technique that has proven adept at quantifying soil properties in situ. The objective of this study was to determine the prediction accuracy of VisNIR DRS in quantifying petroleum hydrocarbons in contaminated soils. Forty-six soil samples (including both contaminated and reference samples) were collected from six different parishes in Louisiana. Each soil sample was scanned using VisNIR DRS at three combinations of moisture content and pretreatment: (i) field-moist intact aggregates, (ii) air-dried intact aggregates, (iii) and air-dried ground soil (sieved through a 2-mm sieve). The VisNIR spectra of soil samples were used to predict total petroleum hydrocarbon (TPH) content in the soil using partial least squares (PLS) regression and boosted regression tree (BRT) models. Each model was validated with 30% of the samples that were randomly selected and not used in the calibration model. The field-moist intact scan proved best for predicting TPH content with a validation r2 of 0.64 and relative percent difference (RPD) of 1.70. Because VisNIR DRS was promising for rapidly predicting soil petroleum hydrocarbon content, future research is warranted to evaluate the methodology for identifying petroleum contaminated soils.

Part C: Geochemistry of Soil Samples from 50 Solution-Collapse Features on the Coconino Plateau, Northern Arizona

USGS Publications Warehouse

Van Gosen, Bradley S.; Wenrich, Karen J.

1991-01-01

Soil sampling surveys were conducted during 1984-1986 across 50 solution-collapse features exposed on the Coconino Plateau of northern Arizona in order to determine whether soil geochemistry can be used to distinguish mineralized breccia pipes from unmineralized collapse features. The 50 sampled features represent the variety of collapse features that crop out on plateau surfaces in northwestern Arizonaoodeeplyorooted solution-collapse breccia pipes, near-surface gypsum collapses, and sinkholes. Of the 50 features that were sampled in this study, 3 are confirmed breccia pipes that contain significant uranium and base-metal minerals, I is believed to be a sinkhole with no economic potential, and 4 are stratabound copper deposits whose possible relationship to breccia pipes is yet to be determined. The remaining collapse features are suspected to overlie breccia pipes, although some of these may represent near surface gypsum collapse features. However, no exploratory drilling results or breccia exposures exist to indicate their underlying structure. The low cost and ease of soil sampling suggested that this technique be evaluated for breccia pipe exploration. This report provides the locations and geochemical results for the soil sampling surveys and brief descriptions of the 50 collapse features. The analytical results of almost 2,000 soil samples are provided in tabular hardcopy and dBase III Plus diskcopy format. The analytical data is provided in digital format to allow the reader to choose their own methods for evaluating the effectiveness of soil sampling over known and suspected breccia pipes. A pilot survey conducted over 17 collapse features in 1984 suggested that soil sampling might be useful in distinguishing mineralized breccia pipes from other circular features. Followup detailed surveys in 1985 and 1986 used a radial sampling pattern at each of 50 sites; at least one third of the samples were collected from areas outside of the collapse feature to provide background data. Samples were consistently collected from 3-4 inches depth after the pilot survey showed that metal concentrations were similar in samples from 3-4 inches and 7-8 inches depth. The geochemical analyses of the <80 mesh fractions of the soil samples were performed by the U.S. Geological Survey Analytical Laboratories and Geochemical Services, Inc. The analytical methods applied to these samples by the U.S. Geological Survey laboratories included inductively coupled plasma-atomic emission spectroscopy, X-ray fluorescence spectrometry, neutron activation, atomic absorption, delayed neutron activation, and classical wet chemistry for carbon, fluorine, and sulfur. Geochemical Services, Inc. analyzed the soil samples by inductively coupled plasma emission spectroscopy.

Part B: Geochemistry of Soil Samples from 50 Solution-Collapse Features on the Coconino Plateau, Northern Arizona

USGS Publications Warehouse

Van Gosen, Bradley S.; Wenrich, Karen J.

1991-01-01

Soil sampling surveys were conducted during 1984-1986 across 50 solution-collapse features exposed on the Coconino Plateau of northern Arizona in order to determine whether soil geochemistry can be used to distinguish mineralized breccia pipes from unmineralized collapse features. The 50 sampled features represent the variety of collapse features that crop out on plateau surfaces in northwestern Arizonaoodeeplyorooted solution-collapse breccia pipes, near-surface gypsum collapses, and sinkholes. Of the 50 features that were sampled in this study, 3 are confirmed breccia pipes that contain significant uranium and base-metal minerals, I is believed to be a sinkhole with no economic potential, and 4 are stratabound copper deposits whose possible relationship to breccia pipes is yet to be determined. The remaining collapse features are suspected to overlie breccia pipes, although some of these may represent near surface gypsum collapse features. However, no exploratory drilling results or breccia exposures exist to indicate their underlying structure. The low cost and ease of soil sampling suggested that this technique be evaluated for breccia pipe exploration. This report provides the locations and geochemical results for the soil sampling surveys and brief descriptions of the 50 collapse features. The analytical results of almost 2,000 soil samples are provided in tabular hardcopy and dBase III Plus diskcopy format. The analytical data is provided in digital format to allow the reader to choose their own methods for evaluating the effectiveness of soil sampling over known and suspected breccia pipes. A pilot survey conducted over 17 collapse features in 1984 suggested that soil sampling might be useful in distinguishing mineralized breccia pipes from other circular features. Followup detailed surveys in 1985 and 1986 used a radial sampling pattern at each of 50 sites; at least one third of the samples were collected from areas outside of the collapse feature to provide background data. Samples were consistently collected from 3-4 inches depth after the pilot survey showed that metal concentrations were similar in samples from 3-4 inches and 7-8 inches depth. The geochemical analyses of the <80 mesh fractions of the soil samples were performed by the U.S. Geological Survey Analytical Laboratories and Geochemical Services, Inc. The analytical methods applied to these samples by the U.S. Geological Survey laboratories included inductively coupled plasma-atomic emission spectroscopy, X-ray fluorescence spectrometry, neutron activation, atomic absorption, delayed neutron activation, and classical wet chemistry for carbon, fluorine, and sulfur. Geochemical Services, Inc. analyzed the soil samples by inductively coupled plasma emission spectroscopy.

Geochemistry of Soil Samples from 50 Solution-Collapse Features on the Coconino Plateau, Northern Arizona

USGS Publications Warehouse

Van Gosen, Bradley S.; Wenrich, Karen J.

1991-01-01

Soil sampling surveys were conducted during 1984-1986 across 50 solution-collapse features exposed on the Coconino Plateau of northern Arizona in order to determine whether soil geochemistry can be used to distinguish mineralized breccia pipes from unmineralized collapse features. The 50 sampled features represent the variety of collapse features that crop out on plateau surfaces in northwestern Arizonaoodeeplyorooted solution-collapse breccia pipes, near-surface gypsum collapses, and sinkholes. Of the 50 features that were sampled in this study, 3 are confirmed breccia pipes that contain significant uranium and base-metal minerals, I is believed to be a sinkhole with no economic potential, and 4 are stratabound copper deposits whose possible relationship to breccia pipes is yet to be determined. The remaining collapse features are suspected to overlie breccia pipes, although some of these may represent near surface gypsum collapse features. However, no exploratory drilling results or breccia exposures exist to indicate their underlying structure. The low cost and ease of soil sampling suggested that this technique be evaluated for breccia pipe exploration. This report provides the locations and geochemical results for the soil sampling surveys and brief descriptions of the 50 collapse features. The analytical results of almost 2,000 soil samples are provided in tabular hardcopy and dBase III Plus diskcopy format. The analytical data is provided in digital format to allow the reader to choose their own methods for evaluating the effectiveness of soil sampling over known and suspected breccia pipes. A pilot survey conducted over 17 collapse features in 1984 suggested that soil sampling might be useful in distinguishing mineralized breccia pipes from other circular features. Followup detailed surveys in 1985 and 1986 used a radial sampling pattern at each of 50 sites; at least one third of the samples were collected from areas outside of the collapse feature to provide background data. Samples were consistently collected from 3-4 inches depth after the pilot survey showed that metal concentrations were similar in samples from 3-4 inches and 7-8 inches depth. The geochemical analyses of the <80 mesh fractions of the soil samples were performed by the U.S. Geological Survey Analytical Laboratories and Geochemical Services, Inc. The analytical methods applied to these samples by the U.S. Geological Survey laboratories included inductively coupled plasma-atomic emission spectroscopy, X-ray fluorescence spectrometry, neutron activation, atomic absorption, delayed neutron activation, and classical wet chemistry for carbon, fluorine, and sulfur. Geochemical Services, Inc. analyzed the soil samples by inductively coupled plasma emission spectroscopy.

Part D: Geochemistry of Soil Samples from 50 Solution-Collapse Features on the Coconino Plateau, Northern Arizona

USGS Publications Warehouse

Van Gosen, Bradley S.; Wenrich, Karen J.

1991-01-01

Soil sampling surveys were conducted during 1984-1986 across 50 solution-collapse features exposed on the Coconino Plateau of northern Arizona in order to determine whether soil geochemistry can be used to distinguish mineralized breccia pipes from unmineralized collapse features. The 50 sampled features represent the variety of collapse features that crop out on plateau surfaces in northwestern Arizonaoodeeplyorooted solution-collapse breccia pipes, near-surface gypsum collapses, and sinkholes. Of the 50 features that were sampled in this study, 3 are confirmed breccia pipes that contain significant uranium and base-metal minerals, I is believed to be a sinkhole with no economic potential, and 4 are stratabound copper deposits whose possible relationship to breccia pipes is yet to be determined. The remaining collapse features are suspected to overlie breccia pipes, although some of these may represent near surface gypsum collapse features. However, no exploratory drilling results or breccia exposures exist to indicate their underlying structure. The low cost and ease of soil sampling suggested that this technique be evaluated for breccia pipe exploration. This report provides the locations and geochemical results for the soil sampling surveys and brief descriptions of the 50 collapse features. The analytical results of almost 2,000 soil samples are provided in tabular hardcopy and dBase III Plus diskcopy format. The analytical data is provided in digital format to allow the reader to choose their own methods for evaluating the effectiveness of soil sampling over known and suspected breccia pipes. A pilot survey conducted over 17 collapse features in 1984 suggested that soil sampling might be useful in distinguishing mineralized breccia pipes from other circular features. Followup detailed surveys in 1985 and 1986 used a radial sampling pattern at each of 50 sites; at least one third of the samples were collected from areas outside of the collapse feature to provide background data. Samples were consistently collected from 3-4 inches depth after the pilot survey showed that metal concentrations were similar in samples from 3-4 inches and 7-8 inches depth. The geochemical analyses of the <80 mesh fractions of the soil samples were performed by the U.S. Geological Survey Analytical Laboratories and Geochemical Services, Inc. The analytical methods applied to these samples by the U.S. Geological Survey laboratories included inductively coupled plasma-atomic emission spectroscopy, X-ray fluorescence spectrometry, neutron activation, atomic absorption, delayed neutron activation, and classical wet chemistry for carbon, fluorine, and sulfur. Geochemical Services, Inc. analyzed the soil samples by inductively coupled plasma emission spectroscopy.

Impact of effluents from a car battery manufacturing plant in Nigeria on water, soil, and food qualities.

PubMed

Orisakwe, Orish Ebere; Asomugha, Rose; Afonne, Onyenmechi Johnson; Anisi, C N; Obi, Ejeatuluchukwualo; Dioka, Chudi Emma

2004-01-01

The authors investigated the impact of effluents from a car battery manufacturing plant in Nnewi, Nigeria, on water, soil, and food qualities. The authors analyzed heavy metals mercury, arsenic, lead, cadmium and nickel in tap and cassava waters, soil, dried cassava tuber, and edible fruit samples from the company, using an atomic absorption spectrophotometer. Other parameters the authors analyzed include pH, electrical conductivity (EC), salinity (SAL), total hardness (TH), biological oxygen demand (BOD), volatile and non-volatile solids, and bacterial and fungal loads of the soil samples. Results show that lead had the highest concentration in all the samples, with the soil samples having the highest lead concentration (38-12 ppm, 102 ppm) and the water samples having the lowest (0.02-0.20 ppm). Mercury had the lowest concentration (<0.0002 ppm) in all the samples. Soil sample B had the highest concentration of all the metals tested. Cassava water had higher levels of EC, SAL, TH, BOD, and volatile and nonvolatile solids, but lower pH than tap water. Bacterial loads were higher than fungal loads in all the soil samples. Because there was moderate contamination of the environment by some of the metals studied, with lead being exceptionally high and above the specified international standards, the authors recommend control measures to reduce lead exposure to the local populace within and around this industry.

Laboratory Evaluation of Remediation Alternatives for U.S. Coast Guard Small Arms Firing Ranges

DTIC Science & Technology

1999-11-01

S) is an immobilization process that involves the mixing of a contaminated soil with a binder material to enhance the physical and chemical...samples were shipped to WES for laboratory analysis. Phase III: Homogenization of the Bulk Samples. Each of the bulk samples was separately mixed to...produce uniform samples for testing. These mixed bulk soil samples were analyzed for metal content. Phase IV: Characterization of the Bulk Soils

Demonstration/Validation of Incremental Sampling at Two Diverse Military Ranges and Development of an Incremental Sampling Tool

DTIC Science & Technology

2010-06-01

Sampling (MIS)? • Technique of combining many increments of soil from a number of points within exposure area • Developed by Enviro Stat (Trademarked...Demonstrating a reliable soil sampling strategy to accurately characterize contaminant concentrations in spatially extreme and heterogeneous...into a set of decision (exposure) units • One or several discrete or small- scale composite soil samples collected to represent each decision unit

The Surface Chemical Composition of Lunar Samples and Its Significance for Optical Properties

NASA Technical Reports Server (NTRS)

Gold, T.; Bilson, E.; Baron, R. L.

1976-01-01

The surface iron, titanium, calcium, and silicon concentration in numerous lunar soil and rock samples was determined by Auger electron spectroscopy. All soil samples show a large increase in the iron to oxygen ratio compared with samples of pulverized rock or with results of the bulk chemical analysis. A solar wind simulation experiment using 2 keV energy alpha -particles showed that an ion dose corresponding to approximately 30,000 years of solar wind increased the iron concentration on the surface of the pulverized Apollo 14 rock sample 14310 to the concentration measured in the Apollo 14 soil sample 14163, and the albedo of the pulverized rock decreased from 0.36 to 0.07. The low albedo of the lunar soil is related to the iron + titanium concentration on its surface. A solar wind sputter reduction mechanism is discussed as a possible cause for both the surface chemical and optical properties of the soil.

Repurposing Archival Samples for Investigating Toxicological Modes of Action

EPA Science Inventory

Little is known about formalin fixation induced genomic artifacts, limiting the use of formalin-fixed paraffin-embedded (FFPE) samples in toxicological and clinical studies. Previously, we identified a consistent shift in transcriptional profiles between paired frozen and FFPE sa...

NHEXAS PHASE I ARIZONA STUDY--METALS IN SOIL ANALYTICAL RESULTS

EPA Science Inventory

The Metals in Soil data set contains analytical results for measurements of up to 11 metals in 551 soil samples over 392 households. Samples were taken by collecting surface soil in the yard and next to the foundation from each residence. The primary metals of interest include ...

DNA analysis of soil extracts can be used to investigate fine root depth distribution of trees

PubMed Central

Bithell, Sean L.; Tran-Nguyen, Lucy T. T.; Hearnden, Mark N.; Hartley, Diana M.

2015-01-01

Understanding the root distribution of trees by soil coring is time-consuming as it requires the separation of roots from soil and classification of roots into particular size classes. This labour-intensive process can limit sample throughput and therefore sampling intensity. We investigated the use of quantitative polymerase chain reaction (qPCR) on soil DNA extractions to determine live fine root DNA density (RDD, mg DNA m−2) for mango (Mangifera indica) trees. The specificity of the qPCR was tested against DNA extracted from 10 mango cultivars and 14 weed species. All mango cultivars and no weeds were detected. Mango DNA was successfully quantified from control soil spiked with mango roots and weed species. The DNA yield of mango root sections stored in moist soil at 23–28 °C declined after 15 days to low concentrations as roots decayed, indicating that dead root materials in moist soil would not cause false-positive results. To separate large roots from samples, a root separation method for field samples was used to target the root fragments remaining in sieved (minimum 2 mm aperture) soil for RDD comparisons. Using this method we compared the seasonal RDD values of fine roots for five mango rootstock cultivars in a field trial. The mean cultivar DNA yields by depth from root fragments in the sieved soil samples had the strongest relationship (adjusted multiple R2 = 0.9307, P < 0.001) with the dry matter (g m−2) of fine (diameter <0.64 mm) roots removed from the soil by sieving. This method provides a species-specific and rapid means of comparing the distribution and concentration of live fine roots of trees in orchards using soil samples up to 500 g. PMID:25552675

Heavy metals concentration and availability of different soils in Sabzevar area, NE of Iran

NASA Astrophysics Data System (ADS)

Mazhari, Seyed Ali; Sharifiyan Attar, Reza; Haghighi, Faezeh

2017-10-01

Soils developed in the Sabzevar ophiolitic area originate from different bedrocks. All samples display similar physico-chemical properties, but heavy metal concentrations vary extremely in different soil samples. Serpentine soils have the highest total concentration of Cr, Ni and Co; while soils derived from mafic rocks (olivine basalts and hornblende gabbros) show the highest Cu (85.29-109.11 ppm) and Zn (46.88-86.60 ppm). The DTPA-extraction of soil samples indicates that the order of metal bioavailability was Cr3% of total Cr; >12% of total Co and >17% of total Zn). Oxide minerals (such as chromite and magnetite) in Sabzevar soils play as resistant minerals and impede the heavy metal availability; while forsterite, pyroxene, serpentine and talc are more labile and show higher DTPA-extractable of heavy metals.

Practical Cost-Optimization of Characterization and Remediation Decisions at DNAPL Sites with Consideration of Prediction Uncertainty

DTIC Science & Technology

2011-05-01

well] TR GWsampC sampling and analysis cost per groundwater sample [$K/sample] i TR boreC cost per soil boring [$K/boring] TR SOILsampC cost per... soil sample analyzed [$K/sample] d annual discount rate [-] DNAPL dense nonaqueous phase liquid (E0, N0) raw easting and northing field...kg] fE fraction of non-monitoring variable costs attributable to energy use [-] Fi total soil and/or groundwater samples divided by pre

Drivers of soil organic matter vulnerability to climate change, Part II: RothC modelling of carbon dynamics including radiocarbon data

NASA Astrophysics Data System (ADS)

Studer, Mirjam S.; Abiven, Samuel; González Domínguez, Beatriz R.; Hagedorn, Frank; Reisser, Moritz; Walthert, Lorenz; Zimmermann, Stephan; Niklaus, Pascal A.

2016-04-01

It is still largely unknown what drives the vulnerability of soil organic carbon (SOC) stocks to climate change, i.e. the likelihood of a soil to loose its SOC along with the change in environmental conditions. Our objective is to assess the SOC vulnerability of Swiss forest soils and identify its potential drivers: climate (temperature, soil moisture), soil (clay content, pH) and landscape (slope, aspect) properties. Fifty-four sites were selected for balanced spatial and driver magnitudes distribution. We measured the SOC characteristics (content and radiocarbon) and studied the C decomposition by laboratory soil incubations (details in Part I, abstract by B. González Domínguez). In order to assess the current SOC pool distribution and its radiocarbon signatures, we extended the Rothamsted Carbon (RothC) model with radiocarbon (14C) isotope modelling (RothCiso). The RothC model distinguishes four active SOC pools, decomposable and resistant plant material, microbial biomass and humified organic matter, and an inert SOC pool (Jenkinson 1990). The active pools are decomposed and mineralized to CO2 by first order kinetics. The RothCiso assigns all pools a 14C signature, based on the atmospheric 14C concentrations of the past century (plant C inputs) and their turnover. Currently we constrain the model with 14C signatures measured on the 54 fresh and their corresponding archived bulk soil samples, taken 12-24 years before. We were able to reproduce the measured radiocarbon concentrations of the SOC with the RothCiso and first results indicate, that the assumption of an inert SOC pool, that is radiocarbon dead, is not appropriate. In a second step we will compare the SOC mean residence time assessed by the two methodological approaches - incubation (C efflux based) and modelling (C stock based) - and relate it to the environmental drivers mentioned above. With the combination of the two methodological approaches and 14C analysis we hope to gain more insights into the source of the C lost along with climate change - is it "young" C from active pools with high turnover (e.g. plant material) or is it rather "old" C that was stabilized in pools with slow turnover (e.g. "humified" or stabilized organic matter)? This will enable us to judge if the C losses observed in the incubation experiments are relevant for longer time scales (decades) and could not be easily compensated for by increased C inputs. Thus, the SOC vulnerability to climate change will be rated based on the amount and source of C lost and compared with climate, soil and landscape properties to gain insights on the drivers of the SOC vulnerability on a regional scale. References Jenkinson, D. S. (1990). The turnover of organic carbon and nitrogen in soil. Phil. Trans. R. Soc. Lond. B, 329, 361-368.

GY SAMPLING THEORY IN ENVIRONMENTAL STUDIES 1: ASSESSING SOIL SPLITTING PROTOCOLS

EPA Science Inventory

Five soil sample splitting methods (riffle splitting, paper cone riffle splitting, fractional shoveling, coning and quartering, and grab sampling) were evaluated with synthetic samples to verify Pierre Gy sampling theory expectations. Individually prepared samples consisting of l...

Meteoric 10Be as a tool to investigate human induced soil fluxes: a conceptual model

NASA Astrophysics Data System (ADS)

Campforts, Benjamin; Govers, Gerard; Vanacker, Veerle; De Vente, Joris; Boix-Fayos, Carolina; Minella, Jean; Baken, Stijn; Smolders, Erik

2014-05-01

The use of meteoric 10Be as a tool to understand long term landscape behavior is becoming increasingly popular. Due its high residence time, meteoric 10Be allows in principle to investigate in situ erosion rates over time scales exceeding the period studied with classical approaches such as 137Cs. The use of meteoric 10Be strongly contributes to the traditional interpretation of sedimentary archives which cannot be unequivocally coupled to sediment production and could provide biased information over longer time scales (Sadler, 1981). So far, meteoric 10Be has successfully been used in geochemical fingerprinting of sediments, to date soil profiles, to assess soil residence times and to quantify downslope soil fluxes using accumulated 10Be inventories along a hill slope. However, less attention is given to the potential use of the tracer to directly asses human induced changes in soil fluxes through deforestation, cultivation and reforestation. A good understanding of the processes governing the distribution of meteoric 10Be both within the soil profile and at landscape scale is essential before meteoric 10Be can be successfully applied to assess human impact. We developed a spatially explicit 2D-model (Be2D) in order to gain insight in meteoric 10Be movement along a hillslope that is subject to human disturbance. Be2D integrates both horizontal soil fluxes and vertical meteoric 10Be movement throughout the soil prolife. Horizontal soil fluxes are predicted using (i) well studied geomorphical laws for natural erosion and soil formation as well as (ii) human accelerated water and tillage erosion. Vertical movement of meteoric 10Be throughout the soil profile is implemented by inserting depth dependent retardation calculated using experimentally determined partition coefficients (Kd). The model was applied to different environments such as (i) the Belgian loess belt, characterized by aeolian deposits enriched in inherited meteoric 10Be, (ii) highly degraded and stony Spanish farmlands and (iii) strongly weathered Brazilian soils, relatively recently taken into cultivation. Model results confirm the hypothesis that meteoric 10Be can be a useful tracer to investigate human induced soil fluxes. However, interpretation of meteoric 10Be inventories along the profile must be performed with sufficient care: it is of utmost importance to jointly interpret meteoric 10Be inventories and depth dependent concentration. Long periods of human disturbance are clearly recognizable in the modeled meteoric 10Be signatures whereas the recognition of shorter periods of human impact critically depends on the boundary conditions. A sensitivity analysis points towards the essential role of soil chemistry in controlling depth dependent meteoric 10Be concentrations and associated lateral meteoric 10Be movement. The Be2D model is a step forward in unraveling the dynamic interplay between vertical meteoric 10Be migration and horizontal soil fluxes and is therefore very suited to underpin empirical work. In a first phase the Be2D model can be used as an exploration tool to select sampling locations whereas in a later phase, the model may be used to extrapolate experimental observations to the broader landscape scale. Sadler, P., 1981. Sediment accumulation rates and the completeness of stratigraphic sections. J. Geol. 89, 569-584.

Micro-PIXE evaluation of radioactive cesium transfer in contaminated soil samples

NASA Astrophysics Data System (ADS)

Fujishiro, F.; Ishii, K.; Matsuyama, S.; Arai, H.; Ishizaki, A.; Osada, N.; Sugai, H.; Kusano, K.; Nozawa, Y.; Yamauchi, S.; Karahashi, M.; Oshikawa, S.; Kikuchi, K.; Koshio, S.; Watanabe, K.; Suzuki, Y.

2014-01-01

Micro-PIXE analysis has been performed on two soil samples with high cesium activity concentrations. These soil samples were contaminated by fallout from the accident at Fukushima Daiichi Nuclear Power Plant. One exhibits a radioactive cesium transfer of ˜0.01, and the other shows a radioactive cesium transfer of less than 0.001, even though both samples have high cesium activity concentrations exceeding 10,000 Bq/kg. X-ray spectra and elemental images of the soil samples revealed the presence of chlorine, which can react with cesium to produce an inorganic soluble compound, and phosphorus-containing cesium-capturable organic compounds.

Methanogens at the top of the world: occurrence and potential activity of methanogens in newly deglaciated soils in high-altitude cold deserts in the Western Himalayas

PubMed Central

Aschenbach, Katrin; Conrad, Ralf; Řeháková, Klára; Doležal, Jiří; Janatková, Kateřina; Angel, Roey

2013-01-01

Methanogens typically occur in reduced anoxic environments. However, in recent studies it has been shown that many aerated upland soils, including desert soils also host active methanogens. Here we show that soil samples from high-altitude cold deserts in the western Himalayas (Ladakh, India) produce CH4 after incubation as slurry under anoxic conditions at rates comparable to those of hot desert soils. Samples of matured soil from three different vegetation belts (arid, steppe, and subnival) were compared with younger soils originating from frontal and lateral moraines of receding glaciers. While methanogenic rates were higher in the samples from matured soils, CH4 was also produced in the samples from the recently deglaciated moraines. In both young and matured soils, those covered by a biological soil crust (biocrust) were more active than their bare counterparts. Isotopic analysis showed that in both cases CH4 was initially produced from H2/CO2 but later mostly from acetate. Analysis of the archaeal community in the in situ soil samples revealed a clear dominance of sequences related to Thaumarchaeota, while the methanogenic community comprised only a minor fraction of the archaeal community. Similar to other aerated soils, the methanogenic community was comprised almost solely of the genera Methanosarcina and Methanocella, and possibly also Methanobacterium in some cases. Nevertheless, ~103 gdw−1 soil methanogens were already present in the young moraine soil together with cyanobacteria. Our results demonstrate that Methanosarcina and Methanocella not only tolerate atmospheric oxygen but are also able to survive in these harsh cold environments. Their occurrence in newly deglaciated soils shows that they are early colonizers of desert soils, similar to cyanobacteria, and may play a role in the development of desert biocrusts. PMID:24348469

Advanced multivariate analysis to assess remediation of hydrocarbons in soils.

PubMed

Lin, Deborah S; Taylor, Peter; Tibbett, Mark

2014-10-01

Accurate monitoring of degradation levels in soils is essential in order to understand and achieve complete degradation of petroleum hydrocarbons in contaminated soils. We aimed to develop the use of multivariate methods for the monitoring of biodegradation of diesel in soils and to determine if diesel contaminated soils could be remediated to a chemical composition similar to that of an uncontaminated soil. An incubation experiment was set up with three contrasting soil types. Each soil was exposed to diesel at varying stages of degradation and then analysed for key hydrocarbons throughout 161 days of incubation. Hydrocarbon distributions were analysed by Principal Coordinate Analysis and similar samples grouped by cluster analysis. Variation and differences between samples were determined using permutational multivariate analysis of variance. It was found that all soils followed trajectories approaching the chemical composition of the unpolluted soil. Some contaminated soils were no longer significantly different to that of uncontaminated soil after 161 days of incubation. The use of cluster analysis allows the assignment of a percentage chemical similarity of a diesel contaminated soil to an uncontaminated soil sample. This will aid in the monitoring of hydrocarbon contaminated sites and the establishment of potential endpoints for successful remediation.

Using the VegeSafe community science program to measure, evaluate risk and advise on soil-metal contamination in Sydney backyards

NASA Astrophysics Data System (ADS)

Taylor, M. P.; Rouillon, M.; Harvey, P.; Kristensen, L. J.; Steven, G. G.

2016-12-01

The extent of metal contamination in Sydney residential garden soils was evaluated using data collated from a 3-year university community science program called VegeSafe. Despite knowledge of industrial and urban contamination amongst scientists, the general public remains under informed about the potential risks of exposure from legacy contaminants in their home environments. The Australian community was offered free soil metal screening allowing access to soil samples for research purposes. Participants followed specific soil sampling instructions and posted samples to the University for analysis with a field portable X-ray Fluorescence (pXRF) spectrometer. Over the 3-year period >5000 soil samples were collected and analysed from >1000 households across Australia, primarly from vegetable gardens. As anticipated, the primary soil metal of concern was lead: mean concentrations were 413 mg/kg (front garden), 707 mg/kg (drip line), 226 mg/kg (back yard) and 301 mg/kg (vegetable garden). The Australian soil lead guideline of 300 mg/kg for residential yards was exceeded at 40% of domestic properties. Soil lead concentrations >1000 mg/kg were identified in 15% of Sydney backyards. The incidence of highest soil lead contamination was greatest in the inner city area with concentrations declining towards background values of 20-30 mg/kg at 30-40 km distance from the city. Community engagement with VegeSafe participants has resulted in useful outcomes: dissemination of knowledge related to contamination legacies and health risks, owners building raised beds containing clean soil, and, in numerous cases owners replacing their contaminated soil. This study demonstrates the potential for similar community science programs for expediting mass sample collection of soils and dusts for analysis of traditional and emerging contaminants within the home environment.

Chroni - an Android Application for Geochronologists to Access Archived Sample Analyses from the NSF-Funded Geochron.Org Data Repository.

NASA Astrophysics Data System (ADS)

Nettles, J. J.; Bowring, J. F.

2014-12-01

NSF requires data management plans as part of funding proposals and geochronologists, among other scientists, are archiving their data and results to the public cloud archives managed by the NSF-funded Integrated Earth Data Applications, or IEDA. GeoChron is a database for geochronology housed within IEDA. The software application U-Pb_Redux developed at the Cyber Infrastructure Research and Development Lab for the Earth Sciences (CIRDLES.org) at the College of Charleston provides seamless connectivity to GeoChron for uranium-lead (U-Pb) geochronologists to automatically upload and retrieve their data and results. U-Pb_Redux also manages publication-quality documents including report tables and graphs. CHRONI is a lightweight mobile application for Android devices that provides easy access to these archived data and results. With CHRONI, U-Pb geochronologists can view archived data and analyses downloaded from the Geochron database, or any other location, in a customizable format. CHRONI uses the same extensible markup language (XML) schema and documents used by U-Pb_Redux and GeoChron. Report Settings are special XML files that can be customized in U-Pb_Redux, stored in the cloud, and then accessed and used in CHRONI to create the same customized data display on the mobile device. In addition to providing geologists effortless and mobile access to archived data and analyses, CHRONI allows users to manage their GeoChron credentials, quickly download private and public files via a specified IEDA International Geo Sample Number (IGSN) or URL, and view specialized graphics associated with particular IGSNs. Future versions of CHRONI will be developed to support iOS compatible devices. CHRONI is an open source project under the Apache 2 license and is hosted at https://github.com/CIRDLES/CHRONI. We encourage community participation in its continued development.

Soil Carbon Variability and Change Detection in the Forest Inventory Analysis Database of the United States

NASA Astrophysics Data System (ADS)

Wu, A. M.; Nater, E. A.; Dalzell, B. J.; Perry, C. H.

2014-12-01

The USDA Forest Service's Forest Inventory Analysis (FIA) program is a national effort assessing current forest resources to ensure sustainable management practices, to assist planning activities, and to report critical status and trends. For example, estimates of carbon stocks and stock change in FIA are reported as the official United States submission to the United Nations Framework Convention on Climate Change. While the main effort in FIA has been focused on aboveground biomass, soil is a critical component of this system. FIA sampled forest soils in the early 2000s and has remeasurement now underway. However, soil sampling is repeated on a 10-year interval (or longer), and it is uncertain what magnitude of changes in soil organic carbon (SOC) may be detectable with the current sampling protocol. We aim to identify the sensitivity and variability of SOC in the FIA database, and to determine the amount of SOC change that can be detected with the current sampling scheme. For this analysis, we attempt to answer the following questions: 1) What is the sensitivity (power) of SOC data in the current FIA database? 2) How does the minimum detectable change in forest SOC respond to changes in sampling intervals and/or sample point density? Soil samples in the FIA database represent 0-10 cm and 10-20 cm depth increments with a 10-year sampling interval. We are investigating the variability of SOC and its change over time for composite soil data in each FIA region (Pacific Northwest, Interior West, Northern, and Southern). To guide future sampling efforts, we are employing statistical power analysis to examine the minimum detectable change in SOC storage. We are also investigating the sensitivity of SOC storage changes under various scenarios of sample size and/or sample frequency. This research will inform the design of future FIA soil sampling schemes and improve the information available to international policy makers, university and industry partners, and the public.

Evaluation of some pollutant levels in environmental samples collected from the area of the new campus of Taif University.

PubMed

Sharshar, Taher; Hassan, H Ebrahim; Arida, Hassan A; Aydarous, Abdulkadir; Bazaid, Salih A; Ahmed, Mamdouh A

2013-01-01

The levels of radioactivity and heavy metals in soil, plant and groundwater samples collected from the area of the new campus of Taif University, Saudi Arabia, and its neighbouring areas have been determined. High-resolution gamma-ray spectroscopy was used for radioactivity measurements, and inductively coupled plasma atomic emission spectroscopy was used to determine the concentration of heavy metals. The means of (226)Ra, (228)Ra and (40)K concentrations in water samples collected from four wells were found to be 0.13 ± 0.03, 0.05 ± 0.03 and 1.3 ± 0.5 Bq l(-1), respectively. The means of (238)U, (226)Ra, (228)Ra ((232)Th for soil samples) and (40)K concentrations in wild plant and soil samples were found to be 3.7 ± 4.1, 8.8 ± 11.6, 3.8 ± 2.9 and 1025 ± 685, and 8.6 ± 3.4, 12.8 ± 3.4, 16.6 ± 7.1 and 618 ± 82 Bq kg(-1) dry weight (DW), respectively. The (137)Cs of artificial origin was also detected in soil samples with a mean concentration of 3.8 ± 2.2 Bq kg(-1) DW. Evaluating the results, it can be concluded that the concentrations of (238)U, (226)Ra, (232)Th and (40)K in soil samples fall within the world average. Furthermore, 19 trace and major elements in groundwater samples and 22 elements in soil and plant samples were determined. The sampling locations of soil can be classified into three groups (relatively high, medium and low polluted) according to their calculated metal pollution index using the contents of trace and major elements. A cluster analysis of the contents of radioactivity and trace element contents in soil samples shows the presence of two main distinct clusters of sampling locations.

Changes of soil organic matter and microbial activity in irrigated and non irrigated olive groves

NASA Astrophysics Data System (ADS)

Kavvadias, Victor; Papadopoulou, Maria; Theocharopoulos, Sideris; Vavoulidou, Evagelia; Doula, Maria; Reppas, Spiros

2014-05-01

The implementation of olive cultivation techniques in Greece has not been systematically tested under the prevailing Mediterranean conditions. A LIFE+ project was initiated (oLIVE-CLIMA; LIFE 11/ENV/000942) aiming to introduce new management practices in olive tree crops that lead to increased carbon dioxide uptake by plants as well as carbon sequestration from the atmosphere and reverse the trend of soil organic matter decline, erosion and desertification. This paper presents data on soil organic matter and microbial activity from a soil campaign in a pilot region in Greece, and particularly in the area of Chora, prefecture of Messinia, South west Peloponnese. The soil campaign took place during the period December 2012-February 2013. Twelve soil parcels of olive groves were selected (6 irrigated and 6 rainfed) and in each soil parcel six composite soil samples were taken from 0-10 cm depth at equal intervals along a straight line of the trunk of the tree to the middle of the distance from the nearest tree of the next tree series. The first three samples were under olive tree canopy. An additional composite sample was taken at depth of 10-40 cm. Soil samples were analyzed for soil physicochemical and biological properties. In this study results for total organic carbon (TOC), soil basal microbial respiration (BR), microbial biomass C (MB-C) from the region of Messinia, are presented. Organic matter was determined by dichromate oxidation. The microbial activity was measured by the amount of CO2 evolution, while microbial biomass C was determined by substrate-induced respiration, after the addition of glucose. The results showed considerable differences in TOC, BR and MB-C associated with the sampling position and soil depth. The higher TOC, BR and MB-C values, in most cases, were determined in samples taken from points under the canopy, but not close to the tree trunk compared to the sampling points outside the canopy. This indicates the positive effect of rhizosphere and the favorable soil moisture conditions under tree canopy on soil microbial activities. TOC, BR and MB-C values were considerably lower in soil depth of 10-40cm compared with 0-10 cm in both irrigated and rainfed soil parcels. Moreover BR and MB-C was higher in irrigated soil parcels compared with rainfed ones suggesting that the periodic irrigation significantly enhances the soil microbial activity. There were no considerable differences in TOC. For this the TOC and potential activity of microbial community can contribute in the soil nutrient and irrigation management guidelines in order to exploit the utilization of productive soils in the region under studied.

Differences in soil biological activity by terrain types at the sub-field scale in central Iowa US

DOE PAGES

Kaleita, Amy L.; Schott, Linda R.; Hargreaves, Sarah K.; ...

2017-07-07

Soil microbial communities are structured by biogeochemical processes that occur at many different spatial scales, which makes soil sampling difficult. Because soil microbial communities are important in nutrient cycling and soil fertility, it is important to understand how microbial communities function within the heterogeneous soil landscape. In this study, a self-organizing map was used to determine whether landscape data can be used to characterize the distribution of microbial biomass and activity in order to provide an improved understanding of soil microbial community function. Points within a row crop field in south-central Iowa were clustered via a self-organizing map using sixmore » landscape properties into three separate landscape clusters. Twelve sampling locations per cluster were chosen for a total of 36 locations. After the soil samples were collected, the samples were then analysed for various metabolic indicators, such as nitrogen and carbon mineralization, extractable organic carbon, microbial biomass, etc. It was found that sampling locations located in the potholes and toe slope positions had significantly greater microbial biomass nitrogen and carbon, total carbon, total nitrogen and extractable organic carbon than the other two landscape position clusters, while locations located on the upslope did not differ significantly from the other landscape clusters. However, factors such as nitrate, ammonia, and nitrogen and carbon mineralization did not differ significantly across the landscape. Altogether, this research demonstrates the effectiveness of a terrain-based clustering method for guiding soil sampling of microbial communities.« less

Concentrations of polychlorinated biphenyls in soil and indoor dust associated with electricity generation facilities in Lagos, Nigeria.

PubMed

Folarin, Bilikis Temitope; Abdallah, Mohamed Abou-Elwafa; Oluseyi, Temilola; Olayinka, Kehinde; Harrad, Stuart

2018-09-01

Concentrations of 7 indicator polychlorinated biphenyls (PCBs) were measured in dust and soil samples from 12 power stations collected over the two major seasons of the Nigerian climate. Median ƩPCB 7 concentrations in soil ranged from 2 ng/g for power station A to 220 ng/g for power station I; while those in dust ranged from 21 ng/g for power station L to 2200 ng/g for power station I. For individual congeners, median PCB concentrations ranged from 3.8 ng/g for PCB 101 to 52 ng/g for PCB 180 in dust, and <0.07 ng/g for PCB 28 to 5.9 ng/g for PCB 153 in soil. The type of power station activity exerted a significant influence on concentrations of ΣPCB 7 in dust and soil (generation > transmission > distribution). Congener patterns in dust and soil samples were compared using principal component analysis (PCA) with those in transformer oil samples from 3 of the power stations studied and with common PCB mixtures (Aroclors). This revealed congener patterns in soil were more closely related to that in the transformer oil than dust. Congener patterns in most samples were similar to Aroclor 1260. Concentrations of PCBs in soil samples close to the transformers significantly exceeded those in soil sampled further away. Copyright © 2018 Elsevier Ltd. All rights reserved.

Differences in soil biological activity by terrain types at the sub-field scale in central Iowa US

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kaleita, Amy L.; Schott, Linda R.; Hargreaves, Sarah K.

Soil microbial communities are structured by biogeochemical processes that occur at many different spatial scales, which makes soil sampling difficult. Because soil microbial communities are important in nutrient cycling and soil fertility, it is important to understand how microbial communities function within the heterogeneous soil landscape. In this study, a self-organizing map was used to determine whether landscape data can be used to characterize the distribution of microbial biomass and activity in order to provide an improved understanding of soil microbial community function. Points within a row crop field in south-central Iowa were clustered via a self-organizing map using sixmore » landscape properties into three separate landscape clusters. Twelve sampling locations per cluster were chosen for a total of 36 locations. After the soil samples were collected, the samples were then analysed for various metabolic indicators, such as nitrogen and carbon mineralization, extractable organic carbon, microbial biomass, etc. It was found that sampling locations located in the potholes and toe slope positions had significantly greater microbial biomass nitrogen and carbon, total carbon, total nitrogen and extractable organic carbon than the other two landscape position clusters, while locations located on the upslope did not differ significantly from the other landscape clusters. However, factors such as nitrate, ammonia, and nitrogen and carbon mineralization did not differ significantly across the landscape. Altogether, this research demonstrates the effectiveness of a terrain-based clustering method for guiding soil sampling of microbial communities.« less

Duplex quantitative real-time PCR assay for the detection and discrimination of the eggs of Toxocara canis and Toxocara cati (Nematoda, Ascaridoidea) in soil and fecal samples

PubMed Central

2012-01-01

Background Toxocarosis is a zoonotic disease caused by Toxocara canis (T. canis) and/or Toxocara cati (T. cati), two worldwide distributed roundworms which are parasites of canids and felids, respectively. Infections of humans occur through ingestion of embryonated eggs of T. canis or T. cati, when playing with soils contaminated with dogs or cats feces. Accordingly, the assessment of potential contamination of these areas with these roundworms eggs is paramount. Methods A duplex quantitative real-time PCR (2qPCR) targeting the ribosomal RNA gene internal transcribed spacer (ITS2) has been developed and used for rapid and specific identification of T. canis and T. cati eggs in fecal and soil samples. The assay was set up on DNA samples extracted from 53 adult worms including T. canis, T. cati, T. leonina, Ascaris suum (A. suum) and Parascaris equorum (P. equorum). The assay was used to assess the presence of T. cati eggs in several samples, including 12 clean soil samples spiked with eggs of either T. cati or A. suum, 10 actual soil samples randomly collected from playgrounds in Brussels, and fecal samples from cats, dogs, and other animals. 2qPCR results on dogs and cats fecal samples were compared with results from microscopic examination. Results 2qPCR assay allowed specific detection of T. canis and T. cati, whether adult worms, eggs spiked in soil or fecal samples. The 2qPCR limit of detection (LOD) in spiked soil samples was 2 eggs per g of soil for a turnaround time of 3 hours. A perfect concordance was observed between 2qPCR assay and microscopic examination on dogs and cats feces. Conclusion The newly developed 2qPCR assay can be useful for high throughput prospective or retrospective detection of T.canis and/or T. cati eggs in fecal samples as well as in soil samples from playgrounds, parks and sandpits. PMID:23216873

How much will afforestation of former cropland influence soil C stocks? A synthesis of paired sampling, chronosequence sampling and repeated sampling studies

NASA Astrophysics Data System (ADS)

Vesterdal, Lars; Hansen, K.; Stupak, I.; Don, Axel; Poeplau, C.; Leifeld, Jens; van Wesemael, Bas

2010-05-01

The need for documentation of land-use change effects on soil C is high on the agenda in most signatory countries to the Kyoto Protocol. Large land areas in Europe have experienced land-use change from cropland to forest since 1990 by direct afforestation as well as abandonment and regrowth of marginally productive cropland. Soil C dynamics following land-use change remain highly uncertain due to a limited number of available studies and due to influence of interacting factors such as land use history, soil type, and climate. Common approaches for estimation of potential soil C changes following land-use change are i) paired sampling of plots with a long legacy of different land uses, ii) chronosequence studies of land-use change, and lastly iii) repeated sampling of plots subject to changed land use. This paper will synthesize the quantitative effects of cropland afforestation on soil C sequestration based on all three approaches and will report on related work within Cost 639. Paired plots of forest and cropland were used to study the general differences between soil C stocks in the two land uses. At 27 sites in Denmark distributed among different regions and soil types forest floor and mineral soil were sampled in and around soil pits. Soil C stocks were higher in forest than cropland (mean difference 22 Mg C ha-1 to 1 m depth). This difference was caused solely by the presence of a forest floor in forests; mineral soil C stocks were similar (108 vs. 109 Mg C ha-1) in the two land uses regardless of soil type and the soil layers considered. The chronosequence approach was employed in the AFFOREST project for evaluation of C sequestration in biomass and soils following afforestation of cropland. Two oak (Quercus robur) and four Norway spruce (Picea abies) afforestation chronosequences (age range 1 to 90 years) were studied in Denmark, Sweden and the Netherlands. Forest floor and mineral soil (0-25 cm) C contents were as a minimum unchanged and in most cases there was net C sequestration (range 0-1.3 Mg C ha-1 yr-1). The allocation of sequestered soil C was quite different among chronosequences; forest floors consistently sequestered C (0.1-0.7 Mg C ha-1 yr-1) but there was no general pattern in mineral soil C sequestration. While the paired sampling and the chronosequence approaches both may be confounded by site factors other than the land use, repeated sampling of plots best addresses the pure land-use change effect. Repeated sampling after 18 years was done in a systematic 7x7 km grid to address soil C changes in 15 cropland plots that were converted to forest (7-22 years since afforestation). Consistent with the other two approaches, detectable soil C changes were confined to the forest floor component; forest floor C sequestration rates were 0.24 Mg C ha-1 yr-1 while no changes were detected for mineral soils. The three approaches to estimation of soil C sequestration indeed point to a common conclusion: The potential for soil C sequestration is mainly confined to the forest floor whereas notable C sequestration is less likely to occur in the mineral soil. However, more generalizable knowledge is badly needed for reporting of land-use change effects on mineral soil C pools. WG II of Cost 639 and the FP7 project GHG Europe is currently establishing a database of LUC studies. This database will be used to establish so-called Carbon Response Functions (CRF), i.e. simple models predicting the annual rate of change in soil C pools. These CRFs may serve as tools for syntheses of land-use change effects for Europe as well as for improved reporting of soil C dynamics following land-use change.

Contrasting the microbiomes from forest rhizosphere and deeper bulk soil from an Amazon rainforest reserve.

PubMed

Fonseca, Jose Pedro; Hoffmann, Luisa; Cabral, Bianca Catarina Azeredo; Dias, Victor Hugo Giordano; Miranda, Marcio Rodrigues; de Azevedo Martins, Allan Cezar; Boschiero, Clarissa; Bastos, Wanderley Rodrigues; Silva, Rosane

2018-02-05

Pristine forest ecosystems provide a unique perspective for the study of plant-associated microbiota since they host a great microbial diversity. Although the Amazon forest is one of the hotspots of biodiversity around the world, few metagenomic studies described its microbial community diversity thus far. Understanding the environmental factors that can cause shifts in microbial profiles is key to improving soil health and biogeochemical cycles. Here we report a taxonomic and functional characterization of the microbiome from the rhizosphere of Brosimum guianense (Snakewood), a native tree, and bulk soil samples from a pristine Brazilian Amazon forest reserve (Cuniã), for the first time by the shotgun approach. We identified several fungi and bacteria taxon significantly enriched in forest rhizosphere compared to bulk soil samples. For archaea, the trend was the opposite, with many archaeal phylum and families being considerably more enriched in bulk soil compared to forest rhizosphere. Several fungal and bacterial decomposers like Postia placenta and Catenulispora acidiphila which help maintain healthy forest ecosystems were found enriched in our samples. Other bacterial species involved in nitrogen (Nitrobacter hamburgensis and Rhodopseudomonas palustris) and carbon cycling (Oligotropha carboxidovorans) were overrepresented in our samples indicating the importance of these metabolic pathways for the Amazon rainforest reserve soil health. Hierarchical clustering based on taxonomic similar microbial profiles grouped the forest rhizosphere samples in a distinct clade separated from bulk soil samples. Principal coordinate analysis of our samples with publicly available metagenomes from the Amazon region showed grouping into specific rhizosphere and bulk soil clusters, further indicating distinct microbial community profiles. In this work, we reported significant shifts in microbial community structure between forest rhizosphere and bulk soil samples from an Amazon forest reserve that are probably caused by more than one environmental factors such as rhizosphere and soil depth. Copyright © 2017 Elsevier B.V. All rights reserved.

Detection of salts in soil using transversely excited atmospheric (TEA) carbon dioxide (CO2) laser-induced breakdown spectroscopy (LIBS) by the aid of a metal mesh

NASA Astrophysics Data System (ADS)

Idris, N.; Ramli, M.; Khumaeni, A.; Kurihara, K.

2018-04-01

In this work, a nickel metal mesh was used to allow a direct detection of salt in soil sample by LIBS utilizing unique characteristics of a TEA CO2. The metal mesh is placed in the front of the soil sample to prevent the soil sample from blowing off upon focusing the high pulsed laser beam irradiation. LIBS apparatus used in this work is a TEA CO2 laser operated at wavelength of 10.6 μm with pulse energy and duration of 3J and 200 ns, respectively. The laser beam was focused using a ZnSe lens (f = 200 mm) onto soil sample after passing through the metal mesh. The emission spectrum from the induced plasma was detected using an optical multichannel analyzer (OMA) system consisting of a 0.32-m-focal length spectrograph with a grating of 1200 graves/mm and a 1024-channel photodiode detector array with a micro-channel plate intensifier. The soil sample used is a standard soil and ordinary soil containing several salts such as Ca, Mg at high concentration. The LIBS experiment was carried out at high pressure surrounding gas of 1 atmosphere. It was observed that by the aid of the metal mesh, strong breakdown gas plasma can be produced just after TEA CO2 laser irradiation on soil sample without significant sample blowing off. It was found that emission lines from salts, Ca (Ca II 393. 3 nm, Ca II 396.3 nm, Ca I 422.5 nm), and also other salts including Mg and Na can clearly be detected with strong emission intensity and narrow spectral width. This result implies that a TEA CO2 LIBS assisted by the metal mesh (metal mesh method) can be used for direct analysis several salts such as Ca, Mg, and Na in soil sample.

The Arctic Soil Bacterial Communities in the Vicinity of a Little Auk Colony

PubMed Central

Zielińska, Sylwia; Kidawa, Dorota; Stempniewicz, Lech; Łoś, Marcin; Łoś, Joanna M.

2016-01-01

Due to deposition of birds' guano, eggshells or feathers, the vicinity of a large seabirds' breeding colony is expected to have a substantial impact on the soil's physicochemical features as well as on diversity of vegetation and the soil invertebrates. Consequently, due to changing physicochemical features the structure of bacterial communities might fluctuate in different soil environments. The aim of this study was to investigate the bacterial assemblages in the Arctic soil within the area of a birds' colony and in a control sample from a topographically similar location but situated away from the colony's impact area. A high number of OTUs found in both areas indicates a highly complex microbial populations structure. The most abundant phyla in both of the tested samples were: Proteobacteria, Acidobacteria, Actinobacteria, and Chloroflexi, with different proportions in the total share. Despite differences in the physicochemical soil characteristics, the soil microbial community structures at the phylum level were similar to some extent in the two samples. The only share that was significantly higher in the control area when compared to the sample obtained within the birds' colony, belonged to the Actinobacteria phylum. Moreover, when analyzing the class level for each phylum, several differences between the samples were observed. Furthermore, lower proportions of Proteobacteria and Acidobacteria were observed in the soil sample under the influence of the bird's colony, which most probably could be linked to higher nitrogen concentrations in that sample. PMID:27667982