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Sample records for arengukeskkonna mju lapse

  1. AMS Time Lapse Installation

    NASA Video Gallery

    A time lapse video compilation of the installation of the Alpha Magnetic Spectrometer on the International Space Station’s starboard truss using the station’s robotic arm, Canadarm2, during the...

  2. A-3 Construction Time Lapse

    NASA Technical Reports Server (NTRS)

    2009-01-01

    A time lapse from start to finish of steel erection for the 235-foot tall A-3 Test Stand. Ground work for the stand was broken in August 2008 and the final structural steel beam was placed April 9, 2009.

  3. Time lapse photography of clouds.

    PubMed

    Schaefer, V J

    1970-08-01

    The equipment and procedures used in preparing more than 15,240 m of 16-mm time lapse movies of atmospheric clouds is described. Such photographic records are of great value in establishing a dynamic cloud census of a specific area. Operational techniques, the support diagrams, and the optimum time intervals in use for different types of records are presented.

  4. Rim Fire Time Lapse, August 2013

    NASA Video Gallery

    Time-lapse photography shows various perspectives of the 2013 Rim Fire, as viewed from Yosemite National Park. The first part of this video is from the Crane Flat Helibase. The fire is currently bu...

  5. Crawler-Transporter Time-Lapse

    NASA Video Gallery

    Time-lapse video shows crawler-transporter No. 2 traveling from the Vehicle Assembly Building to Launch Pad 39A at NASA's Kennedy Space Center in Florida. The move was performed by the Ground Syste...

  6. 26 CFR 25.2704-1 - Lapse of certain rights.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... family, the lapse is deemed to occur at the time the lapse becomes permanent with respect to the holder... occurs at the time a presently exercisable voting right is restricted or eliminated. (c) Lapse of liquidation right—(1) In general. A lapse of a liquidation right occurs at the time a presently...

  7. 26 CFR 25.2704-1 - Lapse of certain rights.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... family, the lapse is deemed to occur at the time the lapse becomes permanent with respect to the holder... occurs at the time a presently exercisable voting right is restricted or eliminated. (c) Lapse of liquidation right—(1) In general. A lapse of a liquidation right occurs at the time a presently...

  8. Predicting the Initial Lapse Using a Mobile Health Application after Alcohol Detoxification

    ERIC Educational Resources Information Center

    Chih, Ming-Yuan

    2013-01-01

    The prediction and prevention of the initial lapse--which is defined as the first lapse after a period of abstinence--is important because the initial lapse often leads to subsequent lapses (within the same lapse episode) or relapse. The prediction of the initial lapse may allow preemptive intervention to be possible. This dissertation reports on…

  9. MUSCLE: MUltiscale Spherical-ColLapse Evolution

    NASA Astrophysics Data System (ADS)

    Neyrinck, Mark C.

    2016-05-01

    MUSCLE (MUltiscale Spherical ColLapse Evolution) produces low-redshift approximate N-body realizations accurate to few-Megaparsec scales. It applies a spherical-collapse prescription on multiple Gaussian-smoothed scales. It achieves higher accuracy than perturbative schemes (Zel'dovich and second-order Lagrangian perturbation theory - 2LPT), and by including the void-in-cloud process (voids in large-scale collapsing regions), solves problems with a single-scale spherical-collapse scheme.

  10. Pupil Diameter Tracks Lapses of Attention

    PubMed Central

    Murphy, Peter R.; Nieuwenhuis, Sander

    2016-01-01

    Our ability to sustain attention for prolonged periods of time is limited. Studies on the relationship between lapses of attention and psychophysiological markers of attentional state, such as pupil diameter, have yielded contradicting results. Here, we investigated the relationship between tonic fluctuations in pupil diameter and performance on a demanding sustained attention task. We found robust linear relationships between baseline pupil diameter and several measures of task performance, suggesting that attentional lapses tended to occur when pupil diameter was small. However, these observations were primarily driven by the joint effects of time-on-task on baseline pupil diameter and task performance. The linear relationships disappeared when we statistically controlled for time-on-task effects and were replaced by consistent inverted U-shaped relationships between baseline pupil diameter and each of the task performance measures, such that most false alarms and the longest and most variable response times occurred when pupil diameter was both relatively small and large. Finally, we observed strong linear relationships between the temporal derivative of pupil diameter and task performance measures, which were largely independent of time-on-task. Our results help to reconcile contradicting findings in the literature on pupil-linked changes in attentional state, and are consistent with the adaptive gain theory of locus coeruleus-norepinephrine function. Moreover, they suggest that the derivative of baseline pupil diameter is a potentially useful psychophysiological marker that could be used in the on-line prediction and prevention of attentional lapses. PMID:27768778

  11. Explaining lapse in long-term care insurance markets.

    PubMed

    Konetzka, R Tamara; Luo, Ye

    2011-10-01

    Expansion of private long-term care insurance (LTCI) is often posited as a potential mechanism to finance long-term care (LTC) for a growing elderly population in the US. One largely ignored issue is lapse or cancellation of policies. Individuals who let a LTCI policy lapse face resumed risk of LTC expenditures while suffering the financial loss of premiums paid. The motivation for lapse has been poorly understood, though some have hypothesized that improvements in health risk may be responsible. We use 1996-2006 Health and Retirement Study data from 3974 respondents who report having private LTCI to estimate baseline and dynamic predictors of lapse and test for ex post adverse selection. Individuals who lapse are generally poorer, less educated, less healthy, and more likely to be racial and ethnic minorities than those who retain their policies. Changes in health status play a relatively small role in lapse, and we find little evidence for adverse selection associated with lapse. We conclude that lapse of LTCI is more an issue of finances and alternatives than a reassessment of health risk. Because lapse rates are highest among the least healthy individuals, lapse should be considered explicitly in efforts to expand the LTCI market. PMID:20882573

  12. Time-Lapse Imaging of Cell Death.

    PubMed

    Wallberg, Fredrik; Tenev, Tencho; Meier, Pascal

    2016-03-01

    The best approach to distinguish between necrosis and apoptosis is time-lapse video microscopy. This technique enables a biological process to be photographed at regular intervals over a period, which may last from a few hours to several days, and can be applied to cells in culture or in vivo. We have established two time-lapse microscopy methods based on different ways of calculating cell death: semiautomated and automated. In the semiautomated approach, cell death can be visualized by staining with combinations of Alexa Fluor 647-conjugated Annexin V and Sytox Green (SG), or Annexin V(FITC) and Propidium iodide (PI). The automated method is similar except that all cells are labeled with dyes. This allows faster quantification of data. To this end Cell Tracker Green is used to label all cells at time zero in combination with PI and Alexa Fluor 647-conjugated Annexin V. Necrotic cell death is accompanied by either simultaneous labeling with Annexin V and PI or SG (double-positive), or direct PI or SG staining. Additionally, necrotic cells display characteristic morphology, such as cytoplasmic swelling. In contrast to necrosis where membrane permeabilization is an early event, cells that die by apoptosis lose their membrane permeability relatively late. Therefore, the time between Annexin V staining and PI or SG uptake (double-positive) can be used to distinguish necrosis from apoptosis. This protocol describes the analysis of cell death by time-lapse imaging of HT1080 and L929 cells stained with these dyes, but it can be readily adapted to other cell types of interest. PMID:26933245

  13. New Siemens Research Turbine - time lapse

    SciTech Connect

    2009-01-01

    The National Renewable Energy Laboratory (NREL) and Siemens Energy Inc. recently commissioned a new 2.3 megawatt Siemens wind turbine at NREL's National Wind Technology Center. This video shows a time lapse of the installation. The turbine is the centerpiece of a multi-year project to study the performance and aerodynamics of a new class of large, land-based machines — in what will be the biggest government-industry research partnership for wind power generation ever undertaken in the U.S.

  14. Lapse in Institutional Animal Care and Use Committee Continuing Reviews.

    PubMed

    Tsan, Min-Fu; Grabenbauer, Michael; Nguyen, Yen

    2016-01-01

    The United States federal animal welfare regulations and the Public Health Service Policy on Humane Care and Use of Laboratory Animals require that institutional animal care and use committees (IACUCs) conduct continuing reviews of all animal research activities. However, little is known about the lapse rate of IACUC continuing reviews, and how frequently investigators continue research activities during the lapse. It is also not clear what factors may contribute to an institution's lapse in IACUC continuing reviews. As part of the quality assurance program, the Department of Veterans Affairs (VA) has collected performance metric data for animal care and use programs since 2011. We analyzed IACUC continuing review performance data at 74-75 VA research facilities from 2011 through 2015. The IACUC continuing review lapse rates improved from 5.6% in 2011 to 2.7% in 2015. The rate of investigators continuing research activities during the lapse also decreased from 47.2% in 2012 to 7.4% in 2015. The type of IACUCs used and the size of animal research programs appeared to have no effect in facility's rates of lapse in IACUC continuing reviews. While approximately 80% of facilities reported no lapse in IACUC continuing reviews, approximately 14% of facilities had lapse rates of >10% each year. Some facilities appeared to be repeat offenders. Four facilities had IACUC lapse rates of >10% in at least 3 out of 5 years, suggesting a system problem in these facilities requiring remedial actions to improve their IACUC continuing review processes. PMID:27606820

  15. 30 CFR 256.55 - Lapse of bond.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 30 Mineral Resources 2 2010-07-01 2010-07-01 false Lapse of bond. 256.55 Section 256.55 Mineral Resources MINERALS MANAGEMENT SERVICE, DEPARTMENT OF THE INTERIOR OFFSHORE LEASING OF SULPHUR OR OIL AND GAS IN THE OUTER CONTINENTAL SHELF Bonding § 256.55 Lapse of bond. (a) If your surety becomes...

  16. Time-Lapse Zirconography of Continental Growth

    NASA Astrophysics Data System (ADS)

    Parman, S. W.

    2014-12-01

    When did the continents form? Peaks in the distributions of zircon U-Pb ages around 2.7, 1.9 and 1.2 Ga have been used as evidence for increased crustal growth rates at these times (growth pulses). The pulses appear linked to the formation of super-continents, with fundamental implications for the thermal evolution of the mantle. However, the age peaks could also be produced by variations in preservation/destruction rates, in which case the implications for the deep Earth are less direct. Here I use the novel approach of examining U-Pb zircon age spectra as a function of the age of the sediment in which the zircons are preserved. This produces time-lapse sequences of zircon age distributions, and presumably, crustal evolution. The database [1] is large enough (n>200,000) that time-lapse sequences can be constructed for each continent. To my knowledge, this approach has only been applied to the Australian zircon record [2]. The results are quite clear (Figure 1; circles are positions of peaks (x-axis) in detrital zircon U-Pb age spectra in different age sediments (y-axis), size of circle is proportional to the height of the peak). There are no major zircon U-Pb age peaks in the ranges 2.2-2.4 Ga and 1.3-1.6 Ga in any sediment of any age on any continent. While some crust was produced at these times, there is no evidence in the zircon record that substantial amounts of crust of these ages ever existed, suggesting that the troughs in the age spectra are due to substantial decreases in (though not cessation of) crustal production. In contrast, U-Pb age peaks between 2.5 and 2.7 Ga appear in sediments immediately after these times and persist in subsequent sedimentary records. The peak heights decrease steadily through time, indicating that crustal destruction is a significant process in modifying the zircon record, but is not responsible for producing the peaks. The same pattern is seen for age peaks at 1.6-2.1 and 1.0-1.3 Ga. Comparing the time-lapse results with Hf

  17. Lapse in Institutional Animal Care and Use Committee Continuing Reviews

    PubMed Central

    Tsan, Min-Fu; Grabenbauer, Michael; Nguyen, Yen

    2016-01-01

    The United States federal animal welfare regulations and the Public Health Service Policy on Humane Care and Use of Laboratory Animals require that institutional animal care and use committees (IACUCs) conduct continuing reviews of all animal research activities. However, little is known about the lapse rate of IACUC continuing reviews, and how frequently investigators continue research activities during the lapse. It is also not clear what factors may contribute to an institution’s lapse in IACUC continuing reviews. As part of the quality assurance program, the Department of Veterans Affairs (VA) has collected performance metric data for animal care and use programs since 2011. We analyzed IACUC continuing review performance data at 74–75 VA research facilities from 2011 through 2015. The IACUC continuing review lapse rates improved from 5.6% in 2011 to 2.7% in 2015. The rate of investigators continuing research activities during the lapse also decreased from 47.2% in 2012 to 7.4% in 2015. The type of IACUCs used and the size of animal research programs appeared to have no effect in facility’s rates of lapse in IACUC continuing reviews. While approximately 80% of facilities reported no lapse in IACUC continuing reviews, approximately 14% of facilities had lapse rates of >10% each year. Some facilities appeared to be repeat offenders. Four facilities had IACUC lapse rates of >10% in at least 3 out of 5 years, suggesting a system problem in these facilities requiring remedial actions to improve their IACUC continuing review processes. PMID:27606820

  18. Atlantis Time-Lapse Move to KSC Visitor Complex

    NASA Video Gallery

    Time-lapse cameras captured space shuttle Atlantis making a 10-mile trek from the Vehicle Assembly Building at NASA's Kennedy Space Center in Florida to the Kennedy Space Center Visitor Complex whe...

  19. NEA Scout Solar Sail: Half-scale Fold Time Lapse

    NASA Video Gallery

    In this time lapse, the Near-Earth Asteroid Scout (NEA Scout) CubeSat team rolls a half-scale prototype of the small satellite's solar sail in preparation for a deployment test. During its mission,...

  20. Time-Lapsed Animation of a Mercury Day

    NASA Video Gallery

    Parts of Prokofiev crater (center) and Kandinsky crater (upper left side of Prokofiev) stay in darkness, making it possible for ice to persist on the surface. This time-lapsed animation represents ...

  1. Time lapse photography of clouds from high altitude balloons.

    PubMed

    Vonnegut, B

    1970-08-01

    Time lapse pictures of clouds taken by cameras flown at altitudes of 30 km on balloons provide valuable insights into the convection and electrification of cloud systems. Simple camera arrangements for taking such pictures are described.

  2. 77 FR 38396 - Agency Information Collection (Notice of Lapse-Government Life Insurance) Activities Under OMB...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-27

    ... AFFAIRS Agency Information Collection (Notice of Lapse--Government Life Insurance) Activities Under OMB... INFORMATION: Titles: a. Notice of Lapse--Government Life Insurance, VA Form 29-389. b. Application for... government life insurance has lapsed or will lapse due to nonpayment of premiums. The claimant must...

  3. Time - lapse imaging using Ground Penetrating Radar

    NASA Astrophysics Data System (ADS)

    Karaoulis, M.; Revil, A.

    2012-12-01

    Time-lapse inversion of ground penetrating radar data is useful to image the evolution of oil reservoirs during production and enhanced oil recovery. There are many approaches on how to process GPR data. In this work, we utilize techniques similarly applied to seismic refraction. In a crosswell configuration, we record the arrival times, and we image the propagation velocity. Velocity of the electromagnetic waves is affected by the electrical permittivity, which among others, depends on the saturation and properties of the two fluids. Our simulation is based on a two phase solution, where we consider a clayey sand or sandstone with oil being the non-wetting pore fluid phase and water being the pore fluid phase. Porosity and permeability are stochastically generated. Based on the oil-water saturation, we are able to image the electrical permittivity, and therefore the wave velocities. Imagining the velocity through an inversion scheme, allows us to trace the water front at different time-steps. A fast an efficient way to image the velocity field is based on the solution of a second order eikonal equation, where we assume propagation terms for the EM waves, and we utilized a ray tracing technique to find the travel path. For the inversion we apply an active time constrain approach, previously applied to other type of geophysical data. This algorithm incorporates time as a parameter to the model, inverts simultaneously for all time-step data and adds time related constrains to stabilize the inversion. Time related constrains are able to remove random noise that might contaminate the velocity image with inversion artifacts, allowing to distinguish the waterfront clearly.

  4. Lapses in measures recommended for preventing hospital-acquired infection.

    PubMed

    Chandra, P N; Milind, K

    2001-03-01

    This study was carried out in a rural tertiary care referral hospital in central India, to ascertain lapses made by people caring for neonates in measures recommended for preventing hospital-acquired infections. Unobtrusive observation of the healthcare personnel (doctors, nurses, mothers and hospital attendants) during care of the newborn was undertaken. Lapse in handwashing by healthcare personnel was observed around 41% of the time, although mothers practiced their instructions meticulously. Lapses in methods of hand drying were seen around 7-8% of the time, in those who did wash their hands. Gloves were not used around 21% of the time, when they should have been; and of those using gloves, they were unsterile in around 22% cases. At delivery babies were received unhygienically on approximately 67% of occasions observed. Lapses during cord care ranged from 14.2% to 28.6% and during resuscitation from 16.6% to 60% of occasions. An uncleaned stethoscope was used 75% of the time. The practice of putting a finger in the baby's mouth was observed on 18 occasions. Considerable lapses by all, in every measure recommended for the prevention of hospital-acquired infections were observed. It is concluded that nothing other than an individual's commitment is likely to be successful in preventing hospital-acquired infections.

  5. Susceptibility of memory consolidation during lapses in recall

    PubMed Central

    Marra, Vincenzo; O’Shea, Michael; Benjamin, Paul R.; Kemenes, Ildikó

    2013-01-01

    Memories that can be recalled several hours after learning may paradoxically become inaccessible for brief periods after their formation. This raises major questions about the function of these early memory lapses in the structure of memory consolidation. These questions are difficult to investigate because of the lack of information on the precise timing of lapses. However, the use of a single-trial conditioning paradigm in Lymnaea solves this problem. Here we use electrophysiological and behavioural experiments to reveal lapses in memory recall at 30 min and 2 h post conditioning. We show that only during these lapses is consolidation of long-term memory susceptible to interruption by external disturbance. These shared time points of memory lapse and susceptibility correspond to transitions between different phases of memory that have different molecular requirements. We propose that during periods of molecular transition memory recall is weakened, allowing novel sensory cues to block the consolidation of long-term memory. PMID:23481386

  6. Temperature lapse rate as an adjunct to wind shear detection

    NASA Technical Reports Server (NTRS)

    Zweifil, Terry

    1991-01-01

    Several meteorological parameters were examined to determine if measurable atmospheric conditions can improve windshear detection devices. Lapse rate, the temperature change with altitude, shows promise as being an important parameter in the prediction of severe wind shears. It is easily measured from existing aircraft instrumentation, and it can be important indicator of convective activity including thunderstorms and microbursts. The meteorological theory behind lapse rate measurement is briefly reviewed, and and FAA certified system is described that is currently implemented in the Honeywell Wind Shear Detection and Guidance System.

  7. The nuclear debate: Deterrence and the lapse of faith

    SciTech Connect

    Tucker, R.W.

    1985-01-01

    This essay examines the growth of skepticism about the present system of nuclear deterrence. Tucker resists predicting the ultimate outcome, but he views the nuclear debate of this decade as an important ''lapse of faith'' in deterrence and he doubts there will ever be a full restoration of confidence.

  8. Negative Affect and Smoking Lapses: A Prospective Analysis

    ERIC Educational Resources Information Center

    Shiffman, Saul; Waters, Andrew J.

    2004-01-01

    Relapse is a central problem in smoking treatment. Data collected at the time of relapse episodes indicate that stress and negative affect (NA) promote relapse, but retrospective data are potentially biased. The authors performed a prospective analysis of stress and NA prior to initial lapses in smokers (N = 215). Day-to-day changes in stress…

  9. Lessons from NAEYC Accreditation: Avoiding Lapses in Supervision that Place Children at Risk

    ERIC Educational Resources Information Center

    Young Children, 2010

    2010-01-01

    Lapses in supervision of children can happen in all types of programs, and even a momentary lapse can have disastrous consequences. When a lapse occurs that affects program quality and puts children at risk, it is critical to consider the nature of the incident and its lessons for future risk management. Between September 2006 and September 2009,…

  10. TimeLapseAnalyzer: multi-target analysis for live-cell imaging and time-lapse microscopy.

    PubMed

    Huth, Johannes; Buchholz, Malte; Kraus, Johann M; Mølhave, Kristian; Gradinaru, Cristian; v Wichert, Götz; Gress, Thomas M; Neumann, Heiko; Kestler, Hans A

    2011-11-01

    The direct observation of cells over time using time-lapse microscopy can provide deep insights into many important biological processes. Reliable analyses of motility, proliferation, invasive potential or mortality of cells are essential to many studies involving live cell imaging and can aid in biomarker discovery and diagnostic decisions. Given the vast amount of image- and time-series data produced by modern microscopes, automated analysis is a key feature to capitalize the potential of time-lapse imaging devices. To provide fast and reproducible analyses of multiple aspects of cell behaviour, we developed TimeLapseAnalyzer. Apart from general purpose image enhancements and segmentation procedures, this extensible, self-contained, modular cross-platform package provides dedicated modalities for fast and reliable analysis of multi-target cell tracking, scratch wound healing analysis, cell counting and tube formation analysis in high throughput screening of live-cell experiments. TimeLapseAnalyzer is freely available (MATLAB, Open Source) at http://www.informatik.uni-ulm.de/ni/mitarbeiter/HKestler/tla.

  11. Comparison of radiative-convective models with constant and pressure-dependent lapse rates

    NASA Technical Reports Server (NTRS)

    Hummel, J. R.; Kuhn, W. R.

    1981-01-01

    One of the most commonly used models for studying climatic processes is the convective adjustment radiation model. In current radiation models, stable temperature profiles are maintained with a convective adjustment in which the temperature lapse rate is set equal to a critical lapse rate whenever the computed lapse rates exceed the critical value. First introduced by Manabe and Strickler (1964), a variety of convective adjustment models are now in use. It is pointed out that on a global scale, moist adiabatic processes, and thus moist adiabatic lapse rates, approximate the atmospheric temperature profile. Comparisons of profiles from a one-dimensional-radiative-convective model have been made using the conventional 6.5 K/km as the critical lapse rate and the pressure-dependent moist adiabatic lapse rates. For a clear sky and a single effective cloud the surface temperatures are 1 to 3 K higher with the constant 6.5 K/km critical lapse rate.

  12. Seismic imaging of reservoir flow properties: Time-lapse pressurechanges

    SciTech Connect

    Vasco, Don W.

    2003-04-08

    Time-lapse fluid pressure and saturation estimates are sensitive to reservoir flow properties such as permeability. In fact, given time-lapse estimates of pressure and saturation changes, one may define a linear partial differential equation for permeability variations within the reservoir. The resulting linear inverse problem can be solved quite efficiently using sparse matrix techniques. An application to a set of crosswell saturation and pressure estimates from a CO{sub 2} flood at the Lost Hills field in California demonstrates the utility of this approach. From the crosswell estimates detailed estimates of reservoir permeability are produced. The resulting permeability estimates agree with a permeability log in an adjacent well and are in accordance with water and CO{sub 2} saturation changes in the interwell region.

  13. Time-lapse Raman imaging of osteoblast differentiation

    NASA Astrophysics Data System (ADS)

    Hashimoto, Aya; Yamaguchi, Yoshinori; Chiu, Liang-Da; Morimoto, Chiaki; Fujita, Katsumasa; Takedachi, Masahide; Kawata, Satoshi; Murakami, Shinya; Tamiya, Eiichi

    2015-07-01

    Osteoblastic mineralization occurs during the early stages of bone formation. During this mineralization, hydroxyapatite (HA), a major component of bone, is synthesized, generating hard tissue. Many of the mechanisms driving biomineralization remain unclear because the traditional biochemical assays used to investigate them are destructive techniques incompatible with viable cells. To determine the temporal changes in mineralization-related biomolecules at mineralization spots, we performed time-lapse Raman imaging of mouse osteoblasts at a subcellular resolution throughout the mineralization process. Raman imaging enabled us to analyze the dynamics of the related biomolecules at mineralization spots throughout the entire process of mineralization. Here, we stimulated KUSA-A1 cells to differentiate into osteoblasts and conducted time-lapse Raman imaging on them every 4 hours for 24 hours, beginning 5 days after the stimulation. The HA and cytochrome c Raman bands were used as markers for osteoblastic mineralization and apoptosis. From the Raman images successfully acquired throughout the mineralization process, we found that β-carotene acts as a biomarker that indicates the initiation of osteoblastic mineralization. A fluctuation of cytochrome c concentration, which indicates cell apoptosis, was also observed during mineralization. We expect time-lapse Raman imaging to help us to further elucidate osteoblastic mineralization mechanisms that have previously been unobservable.

  14. Time-lapse Raman imaging of osteoblast differentiation

    PubMed Central

    Hashimoto, Aya; Yamaguchi, Yoshinori; Chiu, Liang-da; Morimoto, Chiaki; Fujita, Katsumasa; Takedachi, Masahide; Kawata, Satoshi; Murakami, Shinya; Tamiya, Eiichi

    2015-01-01

    Osteoblastic mineralization occurs during the early stages of bone formation. During this mineralization, hydroxyapatite (HA), a major component of bone, is synthesized, generating hard tissue. Many of the mechanisms driving biomineralization remain unclear because the traditional biochemical assays used to investigate them are destructive techniques incompatible with viable cells. To determine the temporal changes in mineralization-related biomolecules at mineralization spots, we performed time-lapse Raman imaging of mouse osteoblasts at a subcellular resolution throughout the mineralization process. Raman imaging enabled us to analyze the dynamics of the related biomolecules at mineralization spots throughout the entire process of mineralization. Here, we stimulated KUSA-A1 cells to differentiate into osteoblasts and conducted time-lapse Raman imaging on them every 4 hours for 24 hours, beginning 5 days after the stimulation. The HA and cytochrome c Raman bands were used as markers for osteoblastic mineralization and apoptosis. From the Raman images successfully acquired throughout the mineralization process, we found that β-carotene acts as a biomarker that indicates the initiation of osteoblastic mineralization. A fluctuation of cytochrome c concentration, which indicates cell apoptosis, was also observed during mineralization. We expect time-lapse Raman imaging to help us to further elucidate osteoblastic mineralization mechanisms that have previously been unobservable. PMID:26211729

  15. Time-lapse seismic imaging of the Reykjanes geothermal reservoir

    NASA Astrophysics Data System (ADS)

    Weemstra, Cornelis; Obermann, Anne; Blanck, Hanna; Verdel, Arie; Paap, Bob; Árni Guðnason, Egill; Páll Hersir, Gylfi; Jousset, Philippe; Sigurðsson, Ómar

    2016-04-01

    We report on the results obtained from a dense seismic deployment over a geothermal reservoir. The reservoir has been producing continuously for almost a decade and is located on the tip of the Reykjanes peninsula, SW Iceland. The seismic stations on top of the reservoir have continuously recorded the ambient seismic wavefield between April 2014 and September 2015. The density of the seismic network makes the data well suited for time-lapse seismic imaging of the reservoir. To that end we compute time-lapse responses through the application of seismic interferometry. These interferometric lapse responses are obtained by simple crosscorrelation of the seismic noise recorded by the different seismic stations. We subsequently evaluate the temporal variation of the coda of these crosscorrelations. The term coda refers to the later arriving, multiple scattered waves. The multiple scattering implies that these waves have sampled the subsurface very densely and hence become highly sensitive to tiny mechanical and structural changes in that subsurface. This sensitivity allows one, in principle at least, to monitor the geothermal reservoir. Preliminary results indeed suggest a relation between the temporal variation of the coda waves and the reservoir. Ultimately, this method may lead to a means to monitor a geothermal reservoir in both space and time.

  16. Situational factors associated with AIDS risk behavior lapses and coping strategies used by gay men who successfully avoid lapses.

    PubMed

    Kelly, J A; Kalichman, S C; Kauth, M R; Kilgore, H G; Hood, H V; Campos, P E; Rao, S M; Brasfield, T L; St Lawrence, J S

    1991-10-01

    While most gay men have reduced behavior practices at high risk for HIV infection, there is growing evidence that many also lapse to unsafe sex. This study examined situational factors related to risk behavior lapses as well as coping strategies used by men who successfully resist lapse urges. A convenience sample of 470 men patronizing gay bars or attending social organization meetings in four cities was surveyed. Forty-five percent of men were classified as "lapsers" (those who had had unprotected anal intercourse in the previous 6 months) and 24% were classified as "resisters" (those who successfully resisted urges to engage in this behavior). All provided information concerning the importance of factors related to the most recent occurrence of either unsafe sex or resisting unsafe urges. Most episodes of unsafe sex occurred outside monogamous relationships and with partners of unknown HIV serostatus, although simply inquiring about partner serostatus was relatively common. Lapsers rated affectionate feelings and wishing to please a partner as well as spontaneity of unsafe sex as the most important situational factors surrounding high-risk behavior. Resisters of unsafe sex urges reported active cognitive self-guidance, experience in safe sex, and recall of both AIDS fears and safety benefits as their most important coping strategies. Gay men who continue high-risk behavior may be overrelying on partner reports of negative serostatus. Lapse prevention approaches tailored to situations that create increased risk vulnerability must be developed. Teaching skills already used by men who successfully resist unsafe sex urges might be one approach.

  17. Improved site contamination through time-lapse complex resistivity imaging

    NASA Astrophysics Data System (ADS)

    Flores Orozco, Adrian; Kemna, Andreas; Cassiani, Giorgio; Binley, Andrew

    2016-04-01

    In the framework of the EU FP7 project ModelPROBE, time-lapse complex resistivity (CR) measurements were conducted at a test site close to Trecate (NW Italy). The objective was to investigate the capabilities of the CR imaging method to delineate the geometry and dynamics of subsurface hydrocarbon contaminant plume which resulted from a crude oil spill in 1994. To achieve this it is required to discriminate the electrical signal associated to static (i.e., lithology) from dynamic changes in the subsurface, with the latter associated to significant seasonal groundwater fluctuations. Previous studies have demonstrated the benefits of the CR method to gain information which is not accessible with common electrical resistivity tomography. However field applications are still rarely and neither the analysis of the data error for CR time-lapse measurements, nor the inversion itself haven not received enough attention. While the ultimate objective at the site is to characterize, here we address the discrimination of the lithological and hydrological controls on the IP response by considering data collected in an uncontaminated area of the site. In this study we demonstrate that an adequate error description of CR measurements provides images free of artifacts and quantitative superior than previous approaches. Based on this approach, differential images computed for time-lapse data exhibited anomalies well correlated with spatiotemporal changes correlated to seasonal fluctuations in the groundwater level. The proposed analysis may be useful in the characterization of fate and transport of hydrocarbon contaminants relevant for the site, which presents areas contaminated with crude oil.

  18. Recurrent event analysis of lapse and recovery in a smoking cessation clinical trial using bupropion.

    PubMed

    Wileyto, E Paul; Patterson, Freda; Niaura, Raymond; Epstein, Leonard H; Brown, Richard A; Audrain-McGovern, Janet; Hawk, Larry W; Lerman, Caryn

    2005-04-01

    We report a reanalysis of data from a prior study describing the event history of quitting smoking aided by bupropion, using recurrent-event models to determine the effect of the drug on occurrence of lapses and recoveries from lapse (resumption of abstinence). Data were collected on 1,070 subjects across two similar double-blind randomized clinical trials of bupropion versus placebo and fitted with separate Cox regression models for lapse and recovery. Analyses were split using discrete time-varying covariates between the treatment (weeks 1-10) and follow-up phases (end of treatment to 12 months). Bupropion was associated with slower lapse during treatment for both sexes, and being female was associated with faster lapse across both phases. Drug did not affect time to recovery for males but was associated with faster recovery among females, allowing women to recover as quickly as men. High levels of nicotine dependence did not affect time to lapse but were associated with slower recovery from lapse across treatment and follow-up phases. During the treatment phase, higher levels of baseline depression symptoms had no effect on time to lapse but were associated with slower recovery from lapse. Results highlight the asymmetry in factors preventing lapse versus promoting recovery. Specifically, dependence, depression symptoms, and a sex x drug interaction were found to affect recovery but not lapse. Further research disentangling lapse and recovery events from summary abstinence measures is needed to help us develop interventions that take advantage of bupropion at its best and that compensate where it is weak.

  19. Distinct coping strategies differentially predict urge levels and lapses in a smoking cessation attempt.

    PubMed

    Brodbeck, Jeannette; Bachmann, Monica S; Znoj, Hansjörg

    2013-06-01

    This study analysed mechanisms through which stress-coping and temptation-coping strategies were associated with lapses. Furthermore, we explored whether distinct coping strategies differentially predicted reduced lapse risk, lower urge levels, or a weaker association between urge levels and lapses during the first week of an unassisted smoking cessation attempt. Participants were recruited via the internet and mass media in Switzerland. Ecological momentary assessment (EMA) with mobile devices was used to assess urge levels and lapses. Online questionnaires were used to measure smoking behaviours and coping variables at baseline, as well as smoking behaviour at the three-month follow-up. The sample consisted of 243 individuals, aged 20 to 40, who reported 4199 observations. Findings of multilevel regression analyses show that coping was mainly associated with a reduced lapse risk and not with lower urge levels or a weaker association between urge levels and lapses. 'Calming down' and 'commitment to change' predicted a lower lapse risk and also a weaker relation between urge levels and lapses. 'Stimulus control' predicted a lower lapse risk and lower urge levels. Conversely, 'task-orientation' and 'risk assessment' were related to higher lapse risk and 'risk assessment' also to higher urge levels. Disengagement coping i.e. 'eating or shopping', 'distraction', and 'mobilising social support' did not affect lapse risk. Promising coping strategies during the initial stage of smoking cessation attempt are targeted directly at reducing the lapse risk and are characterised by engagement with the stressor or one's reactions towards the stressor and a focus on positive consequences instead of health risks. PMID:23501139

  20. Distinct coping strategies differentially predict urge levels and lapses in a smoking cessation attempt.

    PubMed

    Brodbeck, Jeannette; Bachmann, Monica S; Znoj, Hansjörg

    2013-06-01

    This study analysed mechanisms through which stress-coping and temptation-coping strategies were associated with lapses. Furthermore, we explored whether distinct coping strategies differentially predicted reduced lapse risk, lower urge levels, or a weaker association between urge levels and lapses during the first week of an unassisted smoking cessation attempt. Participants were recruited via the internet and mass media in Switzerland. Ecological momentary assessment (EMA) with mobile devices was used to assess urge levels and lapses. Online questionnaires were used to measure smoking behaviours and coping variables at baseline, as well as smoking behaviour at the three-month follow-up. The sample consisted of 243 individuals, aged 20 to 40, who reported 4199 observations. Findings of multilevel regression analyses show that coping was mainly associated with a reduced lapse risk and not with lower urge levels or a weaker association between urge levels and lapses. 'Calming down' and 'commitment to change' predicted a lower lapse risk and also a weaker relation between urge levels and lapses. 'Stimulus control' predicted a lower lapse risk and lower urge levels. Conversely, 'task-orientation' and 'risk assessment' were related to higher lapse risk and 'risk assessment' also to higher urge levels. Disengagement coping i.e. 'eating or shopping', 'distraction', and 'mobilising social support' did not affect lapse risk. Promising coping strategies during the initial stage of smoking cessation attempt are targeted directly at reducing the lapse risk and are characterised by engagement with the stressor or one's reactions towards the stressor and a focus on positive consequences instead of health risks.

  1. Repeatability observations from a time-lapse seismic survey

    USGS Publications Warehouse

    Walters, S.L.; Miller, R.D.; Raef, A.E.

    2006-01-01

    Time-lapse seismic surveys have proven extremely valuable in recent years, having numerous economical and environmental applications. To fully utilize this monitoring technique, problems associated with recording repeatability must be minimized. Much work has been done to equalize data from one survey to the next via processing techniques (Huang et al., 1998). The purpose of this study is to investigate the potential for minimized processing, allowing study of extremely small changes in subsurface characteristics. The goal is to evaluate source and receiver terrain combination to optimize signal repeatability, and to improve deconvolution with the ground force to suppress different types of noise and increase repeatability. ?? 2005 Society of Exploration Geophysicists.

  2. Predictive modeling of addiction lapses in a mobile health application.

    PubMed

    Chih, Ming-Yuan; Patton, Timothy; McTavish, Fiona M; Isham, Andrew J; Judkins-Fisher, Chris L; Atwood, Amy K; Gustafson, David H

    2014-01-01

    The chronically relapsing nature of alcoholism leads to substantial personal, family, and societal costs. Addiction-comprehensive health enhancement support system (A-CHESS) is a smartphone application that aims to reduce relapse. To offer targeted support to patients who are at risk of lapses within the coming week, a Bayesian network model to predict such events was constructed using responses on 2,934 weekly surveys (called the Weekly Check-in) from 152 alcohol-dependent individuals who recently completed residential treatment. The Weekly Check-in is a self-monitoring service, provided in A-CHESS, to track patients' recovery progress. The model showed good predictability, with the area under receiver operating characteristic curve of 0.829 in the 10-fold cross-validation and 0.912 in the external validation. The sensitivity/specificity table assists the tradeoff decisions necessary to apply the model in practice. This study moves us closer to the goal of providing lapse prediction so that patients might receive more targeted and timely support. PMID:24035143

  3. Long-term Time Lapse Imaging of Mouse Cochlear Explants

    PubMed Central

    Mulvaney, Joanna F.; Dabdoub, Alain

    2014-01-01

    Here we present a method for long-term time-lapse imaging of live embryonic mouse cochlear explants. The developmental program responsible for building the highly ordered, complex structure of the mammalian cochlea proceeds for around ten days. In order to study changes in gene expression over this period and their response to pharmaceutical or genetic manipulation, long-term imaging is necessary. Previously, live imaging has typically been limited by the viability of explanted tissue in a humidified chamber atop a standard microscope. Difficulty in maintaining optimal conditions for culture growth with regard to humidity and temperature has placed limits on the length of imaging experiments. A microscope integrated into a modified tissue culture incubator provides an excellent environment for long term-live imaging. In this method we demonstrate how to establish embryonic mouse cochlear explants and how to use an incubator microscope to conduct time lapse imaging using both bright field and fluorescent microscopy to examine the behavior of a typical embryonic day (E) 13 cochlear explant and Sox2, a marker of the prosensory cells of the cochlea, over 5 days. PMID:25407734

  4. Time-lapse analysis of gravitropism in Ceratodon protonemata

    NASA Technical Reports Server (NTRS)

    Young, J. C.; Sack, F. D.

    1992-01-01

    The tip cell of the protonema of the moss Ceratodon purpureus (Hedw.) Brid. is negatively gravitropic when grown in the dark on supplemented agar. Gravitropism, plastid distribution, and plastid movement were studied in living cells using time-lapse video microscopy and infrared light. A wrong-way (downward) curvature preceded upward curvature and was detected as early as 2 minutes after reorientation. Upward curvature began 30-45 minutes after reorientation to the horizontal. Cell division temporarily reversed upward curvature, but did not inhibit wrong-way curvature. Since significant amyloplast sedimentation always occurred before the start of upward curvature, it is possible that these amyloplasts function as statoliths for upward curvature. However, no significant amyloplast sedimentation occurred before wrong-way curvature. Thus, this early phase of gravitropism cannot require plastid sedimentation for gravity sensing. Most plastids moved within and between zones, and plastid zonation was highly dynamic. Plastids moved toward the apex and toward the base of the cell at rates much slower than cytoplasmic streaming. Despite the dynamic nature of plastid movement and zonation, during upward curvature the distance between sedimented plastids and the apex stayed constant. Time-lapse analysis has revealed intriguing events not readily seen previously using destructive sampling.

  5. Time-lapse analysis of gravitropism in Ceratodon protonemata.

    PubMed

    Young, J C; Sack, F D

    1992-12-01

    The tip cell of the protonema of the moss Ceratodon purpureus (Hedw.) Brid. is negatively gravitropic when grown in the dark on supplemented agar. Gravitropism, plastid distribution, and plastid movement were studied in living cells using time-lapse video microscopy and infrared light. A wrong-way (downward) curvature preceded upward curvature and was detected as early as 2 minutes after reorientation. Upward curvature began 30-45 minutes after reorientation to the horizontal. Cell division temporarily reversed upward curvature, but did not inhibit wrong-way curvature. Since significant amyloplast sedimentation always occurred before the start of upward curvature, it is possible that these amyloplasts function as statoliths for upward curvature. However, no significant amyloplast sedimentation occurred before wrong-way curvature. Thus, this early phase of gravitropism cannot require plastid sedimentation for gravity sensing. Most plastids moved within and between zones, and plastid zonation was highly dynamic. Plastids moved toward the apex and toward the base of the cell at rates much slower than cytoplasmic streaming. Despite the dynamic nature of plastid movement and zonation, during upward curvature the distance between sedimented plastids and the apex stayed constant. Time-lapse analysis has revealed intriguing events not readily seen previously using destructive sampling. PMID:11537671

  6. 40 CFR 60.2655 - How do I renew my lapsed operator qualification?

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... Compliance Times for Commercial and Industrial Solid Waste Incineration Units that Commenced Construction On... methods specified in paragraphs (a) and (b) of this section. (a) For a lapse of less than 3 years, you must complete a standard annual refresher course described in § 60.2650. (b) For a lapse of 3 years...

  7. 40 CFR 60.2655 - How do I renew my lapsed operator qualification?

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... Compliance Times for Commercial and Industrial Solid Waste Incineration Units that Commenced Construction On... methods specified in paragraphs (a) and (b) of this section. (a) For a lapse of less than 3 years, you must complete a standard annual refresher course described in § 60.2650. (b) For a lapse of 3 years...

  8. 40 CFR 60.5150 - How do I renew my lapsed operator qualification?

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... Times for Existing Sewage Sludge Incineration Units Model Rule-Operator Training and Qualification § 60... this section. (a) For a lapse of less than 3 years, you must complete a standard annual refresher course described in § 60.5145. (b) For a lapse of 3 years or more, you must repeat the...

  9. 40 CFR 60.3018 - How do I renew my lapsed operator qualification?

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... Times for Other Solid Waste Incineration Units That Commenced Construction On or Before December 9, 2004...) and (b) of this section. (a) For a lapse of less than 3 years, you must complete a standard annual refresher course described in § 60.3017. (b) For a lapse of 3 years or more, you must repeat the...

  10. 40 CFR 60.3018 - How do I renew my lapsed operator qualification?

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... Times for Other Solid Waste Incineration Units That Commenced Construction On or Before December 9, 2004...) and (b) of this section. (a) For a lapse of less than 3 years, you must complete a standard annual refresher course described in § 60.3017. (b) For a lapse of 3 years or more, you must repeat the...

  11. Exploring Time-Lapse Photography as a Means for Qualitative Data Collection

    ERIC Educational Resources Information Center

    Persohn, Lindsay

    2015-01-01

    Collecting information via time-lapse photography is nothing new. Scientists and artists have been using this kind of data since the late 1800s. However, my research and experiments with time-lapse have shown that great potential may lie in its application to educational and social scientific research methods. This article is part history, part…

  12. The Development of an Aftermath of Dietary Lapses Coping Questionnaire for Weight Control

    ERIC Educational Resources Information Center

    Shimpo, Misa; Akamatsu, Rie

    2015-01-01

    Objective: This study was designed to develop the Aftermath of Dietary Lapses Coping Questionnaire (ADLCQ) for evaluating how people cope with the aftermath of dietary lapses during weight control. Method: Between June-July 2012, dieticians working in public health centres and city offices in Sizuoka, Japan, recruited 466 participants. They were…

  13. Relations among affect, abstinence motivation and confidence, and daily smoking lapse risk.

    PubMed

    Minami, Haruka; Yeh, Vivian M; Bold, Krysten W; Chapman, Gretchen B; McCarthy, Danielle E

    2014-06-01

    This study tested the hypothesis that changes in momentary affect, abstinence motivation, and confidence would predict lapse risk over the next 12-24 hr using Ecological Momentary Assessment (EMA) data from smokers attempting to quit smoking. One hundred and three adult, daily, treatment-seeking smokers recorded their momentary affect, motivation to quit, abstinence confidence, and smoking behaviors in near real time with multiple EMA reports per day using electronic diaries postquit. Multilevel models indicated that initial levels of negative affect were associated with smoking, even after controlling for earlier smoking status, and that short-term increases in negative affect predicted lapses up to 12, but not 24, hr later. Positive affect had significant effects on subsequent abstinence confidence, but not motivation to quit. High levels of motivation appeared to reduce increases in lapse risk that occur over hours although momentary changes in confidence did not predict lapse risk over 12 hr. Negative affect had short-lived effects on lapse risk, whereas higher levels of motivation protected against the risk of lapsing that accumulates over hours. An increase in positive affect was associated with greater confidence to quit, but such changes in confidence did not reduce short-term lapse risk, contrary to expectations. Relations observed among affect, cognitions, and lapse seem to depend critically on the timing of assessments.

  14. 77 FR 22069 - Proposed Information Collection (Notice of Lapse-Government Life Insurance); Comment Request

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-12

    ... AFFAIRS Proposed Information Collection (Notice of Lapse--Government Life Insurance); Comment Request... Life Insurance policy. DATES: Written comments and recommendations on the proposed collection of... use of other forms of information technology. Titles a. Notice of Lapse--Government Life Insurance,...

  15. Adolescent first lapse following smoking cessation: situation characteristics, precipitants and proximal influences.

    PubMed

    Myers, Mark G; Gwaltney, Chad J; Strong, David R; Ramsey, Susan E; Brown, Richard A; Monti, Peter M; Colby, Suzanne M

    2011-12-01

    Despite increased attention to adolescent smoking cessation, little is known about adolescent relapse following a quit attempt. To address this issue, the present study was designed to provide initial information regarding the characteristics of adolescent lapses to smoking following abstinence. Included in the present study were 204 adolescent participants in four independent smoking cessation trials. For the full sample, participants averaged 15.99 (1.27) years of age; 56% were female and 78% were white. Lapse characteristics and precipitants were assessed using the Adolescent Smoking Relapse Review. Three domains of the lapse experience were assessed: lapse situation characteristics, precipitants of use in the situation, and proximal influences (i.e., potential precipitants occurring on the same day, prior to the lapse situation). Participant reports indicated that the modal lapse situation occurred in the evening while socializing with friends at home. Urges or cravings and social pressure were commonly endorsed as occurring in lapse situations. The most frequently reported proximal influence was desire for a cigarette, followed by abstinence-violation cognitions (okay to smoke occasionally, wanted to see what it would be like) and negative emotions. The findings indicate that a broad range of factors appear to influence adolescent smoking lapse and commend the value of incorporating content relevant to managing social and affective cues, strategies for inhibiting the prepotent response to ask for a cigarette, addressing cognitions regarding the difficulty of not smoking (i.e., cessation expectancies) and combating perceptions of the ability to smoke occasionally.

  16. Distress Tolerance Treatment for Early-Lapse Smokers: Rationale, Program Description, and Preliminary Findings

    ERIC Educational Resources Information Center

    Brown, Richard A.; Palm, Kathleen M.; Strong, David R.; Lejuez, Carl W.; Kahler, Christopher W.; Zvolensky, Michael J.; Hayes, Steven C.; Wilson, Kelly G.; Gifford, Elizabeth V.

    2008-01-01

    A significant percentage of individuals attempting smoking cessation lapse within a matter of days, and very few are able to recover to achieve long-term abstinence. This observation suggests that many smokers may have quit-attempt histories characterized exclusively by early lapses to smoking following quit attempts. Recent negative-reinforcement…

  17. Relations among Affect, Abstinence Motivation and Confidence, and Daily Smoking Lapse Risk

    PubMed Central

    Minami, Haruka; Yeh, Vivian M.; Bold, Krysten W.; Chapman, Gretchen B.; McCarthy, Danielle E.

    2016-01-01

    Aims This study tested the hypothesis that changes in momentary affect, abstinence motivation, and confidence would predict lapse risk over the next 12–24 hours using Ecological Momentary Assessment (EMA) data from smokers attempting to quit smoking. Method 103 adult, daily, treatment-seeking smokers recorded their momentary affect, motivation to quit, abstinence confidence, and smoking behaviors in near real time with multiple EMA reports per day using electronic diaries post-quit. Results Multilevel models indicated that initial levels of negative affect were associated with smoking, even after controlling for earlier smoking status, and that short-term increases in negative affect predicted lapses up to 12, but not 24, hours later. Positive affect had significant effects on subsequent abstinence confidence, but not motivation to quit. High levels of motivation appeared to reduce increases in lapse risk that occur over hours while momentary changes in confidence did not predict lapse risk over 12 hours. Conclusion Negative affect had short-lived effects on lapse risk, whereas higher levels of motivation protected against the risk of lapsing that accumulates over hours. An increase in positive affect was associated with greater confidence to quit, but such changes in confidence did not reduce short-term lapse risk, contrary to expectations. Relations observed among affect, cognitions, and lapse seem to depend critically on the timing of assessments. PMID:24955665

  18. Seismic imaging of reservoir flow properties: Time-lapse amplitude changes

    SciTech Connect

    Vasco, D.W.; Datta-Gupta, Akhil; Behrens, Ron; Condon, Pat; Rickett, Jame s

    2003-03-13

    Asymptotic methods provide an efficient means by which to infer reservoir flow properties, such as permeability, from time-lapse seismic data. A trajectory-based methodology, much like ray-based methods for medical and seismic imaging, is the basis for an iterative inversion of time-lapse amplitude changes. In this approach a single reservoir simulation is required for each iteration of the algorithm. A comparison between purely numerical and the trajectory-based sensitivities demonstrates their accuracy. An application to a set of synthetic amplitude changes indicates that they can recover large-scale reservoir permeability variations from time-lapse data. In an application of actual time-lapse amplitude changes from the Bay Marchand field in the Gulf of Mexico we are able to reduce the misfit by 81% in twelve iterations. The time-lapse observations indicate lower permeabilities are required in the central portion of the reservoir.

  19. Time-lapse video sysem used to study nesting gyrfalcons

    USGS Publications Warehouse

    Booms, Travis; Fuller, Mark R.

    2003-01-01

    We used solar-powered time-lapse video photography to document nesting Gyrfalcon (Falco rusticolus) food habits in central West Greenland from May to July in 2000 and 2001. We collected 2677.25 h of videotape from three nests, representing 94, 87, and 49% of the nestling period at each nest. The video recorded 921 deliveries of 832 prey items. We placed 95% of the items into prey categories. The image quality was good but did not reveal enough detail to identify most passerines to species. We found no evidence that Gyrfalcons were negatively affected by the video system after the initial camera set-up. The video system experienced some mechanical problems but proved reliable. The system likely can be used to effectively document the food habits and nesting behavior of other birds, especially those delivering large prey to a nest or other frequently used site.

  20. Time-lapse surface seismic data registration and inversion for CO2 sequestration at Cranfield

    NASA Astrophysics Data System (ADS)

    Zhang, R.; Song, X.; Fomel, S.; Sen, M. K.; Srinivasan, S.

    2012-12-01

    Time-lapse seismic survey for CO2 sequestration study at Cranfield can be problematic because of the misalignments between the time-lapse datasets. Unlike other studies of time-lapse monitoring that use time-shifts as the primary time-lapse effect, we assume that the misalignment of reflections in the Cranfield data is caused by aliasing. To correct for this misalignment so as to enable correct seismic amplitude difference calculation, we apply a local-correlation based warping method to register the post-injection and pre-injection datasets. The application of the registration demonstrates its effectiveness in robust estimation of the time-lapse difference resulting in laterally continuous amplitude. This helps further to apply a basis pursuit inversion on the time-lapse datasets for acoustic impedances. From the inverted time-lapse acoustic impedances and their difference, we identify a zone of strong impedance decrease occurring at the top of the injection interval, which agrees well with the well-log measurements.

  1. With Others or Alone? Adolescent Individual Differences in the Context of Smoking Lapses

    PubMed Central

    Roberts, Megan E.; Bidwell, L. Cinnamon; Colby, Suzanne M.; Gwaltney, Chad J.

    2015-01-01

    Objective Although a great deal of adolescent smoking research has investigated predictors of initiation, much less has focused on predictors of lapsing during a quit attempt. In particular, the role of social context may deserve greater attention in models of adolescent smoking cessation. Therefore, the present investigation aimed to use ecological momentary assessment (EMA) in order to examine individual differences in social lapsing—the extent to which lapses occur around others vs. when alone. Methods Analyses focused on 179 adolescent smokers (aged 14-18) engaged in an unassisted quit attempt. There were two general EMA assessment intervals: pre-quit (1 week) and post-quit (2 weeks). Participants reported every time that they smoked a cigarette and at random, nonsmoking times; in each assessment, participants responded to questions about their current environment, behaviors, and psychological state. A 3-month follow-up assessed longer-term smoking-related outcomes. Results Consistent with other adolescent research, the overall rate of lapsing was very high (93%). Social lapsing rates were likewise high (among those who lapsed, 73% reported their first lapse was social), but also varied continuously across individuals. We computed a social lapsing coefficient for each youth, and found that it related to smoking factors at baseline (e.g., lower smoking intensity and dependence) and follow-up (e.g., lower cotinine levels). Conclusions These results suggest that higher rates of social lapsing are associated with being a lighter, less dependent smoker and having better eventual cessation prospects. Findings provide evidence that accounting for variability in social lapsing may improve theory and treatment. PMID:25664557

  2. Time-lapse imaging of neural development: Zebrafish lead the way into the fourth dimension

    PubMed Central

    Rieger, Sandra; Wang, Fang; Sagasti, Alvaro

    2011-01-01

    Time-lapse imaging is often the only way to appreciate fully the many dynamic cell movements critical to neural development. Zebrafish possess many advantages that make them the best vertebrate model organism for live imaging of dynamic development events. This review will discuss technical considerations of time-lapse imaging experiments in zebrafish, describe selected examples of imaging studies in zebrafish that revealed new features or principles of neural development, and consider the promise and challenges of future time-lapse studies of neural development in zebrafish embryos and adults. PMID:21305690

  3. Growth Signatures of Rosette Plants from Time-Lapse Video.

    PubMed

    Dellen, Babette; Scharr, Hanno; Torras, Carme

    2015-01-01

    Plant growth is a dynamic process, and the precise course of events during early plant development is of major interest for plant research. In this work, we investigate the growth of rosette plants by processing time-lapse videos of growing plants, where we use Nicotiana tabacum (tobacco) as a model plant. In each frame of the video sequences, potential leaves are detected using a leaf-shape model. These detections are prone to errors due to the complex shape of plants and their changing appearance in the image, depending on leaf movement, leaf growth, and illumination conditions. To cope with this problem, we employ a novel graph-based tracking algorithm which can bridge gaps in the sequence by linking leaf detections across a range of neighboring frames. We use the overlap of fitted leaf models as a pairwise similarity measure, and forbid graph edges that would link leaf detections within a single frame. We tested the method on a set of tobacco-plant growth sequences, and could track the first leaves of the plant, including partially or temporarily occluded ones, along complete sequences, demonstrating the applicability of the method to automatic plant growth analysis. All seedlings displayed approximately the same growth behavior, and a characteristic growth signature was found.

  4. Terahertz time-lapse imaging of hydration in physiological tissues

    NASA Astrophysics Data System (ADS)

    Bennett, David B.; Taylor, Zachary D.; Bajwa, Neha; Tewari, Priyamvada; Maccabi, Ashkan; Sung, Shijun; Singh, Rahul S.; Culjat, Martin O.; Grundfest, Warren S.; Brown, Elliott R.

    2011-02-01

    This study describes terahertz (THz) imaging of hydration changes in physiological tissues with high water concentration sensitivity. A fast-scanning, pulsed THz imaging system (centered at 525 GHz; 125 GHz bandwidth) was utilized to acquire a 35 mm x 35 mm field-of-view with 0.5 mm x 0.5 mm pixels in less than two minutes. THz time-lapsed images were taken on three sample systems: (1) a simple binary system of water evaporating from a polypropylene towel, (2) the accumulation of fluid at the site of a sulfuric acid burn on ex vivo porcine skin, and (3) the evaporative dehydration of an ex vivo porcine cornea. The diffusion-regulating behavior of corneal tissue is elucidated, and the correlation of THz reflectivity with tissue hydration is measured using THz spectroscopy on four ex vivo corneas. We conclude that THz imaging can discern small differences in the distribution of water in physiological tissues and is a good candidate for burn and corneal imaging.

  5. Time-Lapse of Backplane of the JWST Being Moved Into Clean Room

    NASA Video Gallery

    This is a time-lapse video of the center section of the 'pathfinder' backplane for NASA's James Webb Space Telescope being moved into the clean room at NASA's Goddard Space Flight Center in Greenbe...

  6. Analysis of Time-Lapse Offset VSP For Monitoring of CO2 Storage at Cranfield, Mississippi

    NASA Astrophysics Data System (ADS)

    Daley, T. M.; Hendrickson, J.; Queen, J. H.

    2013-12-01

    A time-lapse OVSP data set was acquired as part of a subsurface monitoring program for geologic sequestration of CO2. The data analysis was hampered by acquisition problems that limited the signal-to-noise ratio (S/N). Time-lapse processing generated difference corridor stacks to investigate CO2 induced reflection amplitude changes from each source point. Calculation of time-lapse repeatability, using multiple methods, indicated the need for corroborating information to interpret observed amplitude changes. Seismic finite-difference modeling established the interpretation of wavelet trough and peak amplitudes as reflectivity from the top and bottom of the CO2 reservoir. Furthermore, the time-lapse reflectivity differences seen in the field data for both the top and base of the reservoir are comparable to those predicted by the modeling and are consistent for all 10 shot points analyzed.

  7. Poor sleep quality as a risk factor for lapse following a cannabis quit attempt.

    PubMed

    Babson, Kimberly A; Boden, Matthew Tyler; Harris, Alex H; Stickle, Timothy R; Bonn-Miller, Marcel O

    2013-04-01

    Treatments for cannabis dependence are associated with high rates of lapse/relapse, underscoring the importance of identifying malleable risk factors that are associated with quit failure. Whereas research has demonstrated that poor sleep quality following cannabis discontinuation is related to subsequent use, there has yet to be an examination of whether poor sleep quality prior to a quit attempt results in a similar pattern of lapse. The present study addressed this gap by examining the role of pre-quit sleep quality on early lapse to cannabis use following a self-guided quit attempt, among 55 cannabis dependent military veterans. Results indicated that participants who experienced poor pre-quit sleep quality had greater risk for lapse within the first 2 days (out of 7) following their quit attempt. Findings are discussed in terms of improving treatments for individuals who report poor sleep quality prior to a cannabis quit attempt. PMID:23098380

  8. Twelve tips for addressing medical student and resident physician lapses in professionalism.

    PubMed

    Rougas, Steven; Gentilesco, Bethany; Green, Emily; Flores, Libertad

    2015-01-01

    Medical educators have gained significant ground in the practical and scholarly approach to professionalism. When a lapse occurs, thoughtful remediation to address the underlying issue can have a positive impact on medical students and resident physicians, while failure to address lapses, or to do so ineffectively, can have long-term consequences for learners and potentially patients. Despite these high stakes, educators are often hesitant to address lapses in professionalism, possibly due to a lack of time and familiarity with the process. Attention must be paid to generalizable, hands-on recommendations for daily use so that clinicians and administrators feel well equipped to tackle this often difficult yet valuable task. This article reviews the literature related to addressing unprofessional behavior among trainees in medicine and connects it to the shared experience of medical educators at one institution. The framework presented aims to provide practical guidance and empowerment for educators responsible for addressing medical student and resident physician lapses in professionalism. PMID:25665630

  9. NASA HS3 Mission Time Lapse Highlights Cameras Over Tropical Systems

    NASA Video Gallery

    This is a time-lapse video created with images recorded during a recent HS3 Science Missions with the NASA Global Hawk. Shown are the images from the Daylight, HDVis, and the Low-light Cameras on t...

  10. Orb-2's Antares Rolls Out to Launch Pad (Time-Lapse)

    NASA Video Gallery

    This time-lapse video shows the roll out of the Orbital Sciences Corporation Antares rocket, with the Cygnus spacecraft aboard, from the Horizontal Integration Facility to the Mid-Atlantic Regional...

  11. Feasibility of time-lapse AVO and AVOA analysis to monitor compaction-induced seismic anisotropy

    NASA Astrophysics Data System (ADS)

    He, Y.-X.; Angus, D. A.; Yuan, S. Y.; Xu, Y. G.

    2015-11-01

    Hydrocarbon reservoir production generally results in observable time-lapse physical property changes, such as velocity increases within a compacting reservoir. However, the physical property changes that lead to velocity changes can be difficult to isolate uniquely. Thus, integrated hydro-mechanical simulation, stress-sensitive rock physics models and time-lapse seismic modelling workflows can be employed to study the influence of velocity changes and induced seismic anisotropy due to reservoir compaction. We study the influence of reservoir compaction and compartmentalization on time-lapse seismic signatures for reflection amplitude variation with offset (AVO) and azimuth (AVOA). Specifically, the time-lapse AVO and AVOA responses are predicted for two models: a laterally homogeneous four-layer dipping model and a laterally heterogeneous graben structure reservoir model. Seismic reflection coefficients for different offsets and azimuths are calculated for compressional (P-P) and converted shear (P-S) waves using an anisotropic ray tracer as well as using approximate equations for AVO and AVOA. The simulations help assess the feasibility of using time-lapse AVO and AVOA signatures to monitor reservoir compartmentalization as well as evaluate induced stress anisotropy due to changes in the effective stress field. The results of this study indicate that time-lapse AVO and AVOA analysis can be applied as a potential means for qualitatively and semi-quantitatively linking azimuthal anisotropy changes caused by reservoir production to pressure/stress changes.

  12. Estimation of atmospheric parameters from time-lapse imagery

    NASA Astrophysics Data System (ADS)

    McCrae, Jack E.; Basu, Santasri; Fiorino, Steven T.

    2016-05-01

    A time-lapse imaging experiment was conducted to estimate various atmospheric parameters for the imaging path. Atmospheric turbulence caused frame-to-frame shifts of the entire image as well as parts of the image. The statistics of these shifts encode information about the turbulence strength (as characterized by Cn2, the refractive index structure function constant) along the optical path. The shift variance observed is simply proportional to the variance of the tilt of the optical field averaged over the area being tracked. By presuming this turbulence follows the Kolmogorov spectrum, weighting functions can be derived which relate the turbulence strength along the path to the shifts measured. These weighting functions peak at the camera and fall to zero at the object. The larger the area observed, the more quickly the weighting function decays. One parameter we would like to estimate is r0 (the Fried parameter, or atmospheric coherence diameter.) The weighting functions derived for pixel sized or larger parts of the image all fall faster than the weighting function appropriate for estimating the spherical wave r0. If we presume Cn2 is constant along the path, then an estimate for r0 can be obtained for each area tracked, but since the weighting function for r0 differs substantially from that for every realizable tracked area, it can be expected this approach would yield a poor estimator. Instead, the weighting functions for a number of different patch sizes can be combined through the Moore-Penrose pseudo-inverse to create a new weighting function which yields the least-squares optimal linear combination of measurements for estimation of r0. This approach is carried out, and it is observed that this approach is somewhat noisy because the pseudo-inverse assigns weights much greater than one to many of the observations.

  13. Time-lapse imaging of cell cycle dynamics during development in living cardiomyocyte.

    PubMed

    Hashimoto, Hisayuki; Yuasa, Shinsuke; Tabata, Hidenori; Tohyama, Shugo; Hayashiji, Nozomi; Hattori, Fumiyuki; Muraoka, Naoto; Egashira, Toru; Okata, Shinichiro; Yae, Kojiro; Seki, Tomohisa; Nishiyama, Takahiko; Nakajima, Kazunori; Sakaue-Sawano, Asako; Miyawaki, Atsushi; Fukuda, Keiichi

    2014-07-01

    Mammalian cardiomyocytes withdraw from the cell cycle shortly after birth, although it remains unclear how cardiomyocyte cell cycles behave during development. Compared to conventional immunohistochemistry in static observation, time-lapse imaging can reveal comprehensive data in hard-to-understand biological phenomenon. However, there are no reports of an established protocol of successful time-lapse imaging in mammalian heart. Thus, it is valuable to establish a time-lapse imaging system to enable the observation of cell cycle dynamics in living murine cardiomyocytes. This study sought to establish time-lapse imaging of murine heart to study cardiomyocyte cell cycle behavior. The Fucci (fluorescent ubiquitination-based cell cycle indicator) system can effectively label individual G1, S/G2/M, and G1/S-transition phase nuclei red, green and yellow, respectively, in living mammalian cells, and could therefore be useful to visualize the real-time cell cycle transitions in living murine heart. To establish a similar system for time-lapse imaging of murine heart, we first developed an ex vivo culture system, with the culture conditions determined in terms of sample state, serum concentration, and oxygen concentration. The optimal condition (slice culture, oxygen concentration 20%, serum concentration 10%) successfully mimicked physiological cardiomyocyte proliferation in vivo. Time-lapse imaging of cardiac slices from E11.5, E14.5, E18.5, and P1 Fucci-expressing transgenic mice revealed an elongated S/G2/M phase in cardiomyocytes during development. Our time-lapse imaging of murine heart revealed a gradual elongation of the S/G2/M phase during development in living cardiomyocytes.

  14. Time-lapse joint inversion of geophysical data with automatic joint constraints and dynamic attributes

    NASA Astrophysics Data System (ADS)

    Rittgers, J. B.; Revil, A.; Mooney, M. A.; Karaoulis, M.; Wodajo, L.; Hickey, C. J.

    2016-09-01

    Joint inversion and time-lapse inversion techniques of geophysical data are often implemented in an attempt to improve imaging of complex subsurface structures and dynamic processes by minimizing negative effects of random and uncorrelated spatial and temporal noise in the data. We focus on the structural cross-gradient (SCG) approach (enforcing recovered models to exhibit similar spatial structures) in combination with time-lapse inversion constraints applied to surface-based electrical resistivity and seismic travel-time refraction data. The combination of both techniques is justified by the underlying petrophysical models. We investigate the benefits and trade-offs of SCG and time-lapse constraints. Using a synthetic case study, we show that a combined joint time-lapse inversion approach provides an overall improvement in final recovered models. Additionally, we introduce a new approach to re-weighting SCG constraints based on an iteratively updated normalized ratio of model sensitivity distributions at each time-step. We refer to the new technique as the Automatic Joint Constraints (AJC) approach. The relevance of the new joint time-lapse inversion process is demonstrated on the synthetic example. Then, these approaches are applied to real time-lapse monitoring field data collected during a quarter-scale earthen embankment induced-piping failure test. The use of time-lapse joint inversion is justified by the fact that a change of porosity drives concomitant changes in seismic velocities (through its effect on the bulk and shear moduli) and resistivities (through its influence upon the formation factor). Combined with the definition of attributes (i.e., specific characteristics) of the evolving target associated with piping, our approach allows localizing the position of the preferential flow path associated with internal erosion. This is not the case using other approaches.

  15. Surface temperature lapse rates over complex terrain: Lessons from the Cascade Mountains

    NASA Astrophysics Data System (ADS)

    Minder, Justin R.; Mote, Philip W.; Lundquist, Jessica D.

    2010-07-01

    The typically sparse distribution of weather stations in mountainous terrain inadequately resolves temperature variability. Accordingly, high-resolution gridding of climate data (for applications such as hydrological modeling) often relies on assumptions such as a constant surface temperature lapse rate (i.e., decrease of surface temperature with altitude) of 6.5°C km-1. Using an example of the Cascade Mountains, we describe the temporal and spatial variability of the surface temperature lapse rate, combining data from: (1) COOP stations, (2) nearby radiosonde launches, (3) a temporary dense network of sensors, (4) forecasts from the MM5 regional model, and (5) PRISM geo-statistical analyses. On the windward side of the range, the various data sources reveal annual mean lapse rates of 3.9-5.2°C km-1, substantially smaller than the often-assumed 6.5°C km-1. The data sets show similar seasonal and diurnal variability, with lapse rates smallest (2.5-3.5°C km-1) in late-summer minimum temperatures, and largest (6.5-7.5°C km-1) in spring maximum temperatures. Geographic (windward versus lee side) differences in lapse rates are found to be substantial. Using a simple runoff model, we show the appreciable implications of these results for hydrological modeling.

  16. Physical activity adoption to adherence, lapse, and dropout: a self-determination theory perspective.

    PubMed

    Kinnafick, Florence-Emilie; Thøgersen-Ntoumani, Cecilie; Duda, Joan L

    2014-05-01

    Grounded in Self-Determination Theory, we aimed to explore and identify key motivational processes involved in the transition from a physically inactive to an active lifestyle, and the processes involved in lapse and dropout behavior within a walking program. We implemented a qualitative, longitudinal case study method, using semistructured interviews and theoretical thematic analyses. Fifteen women were interviewed over 10 months and three profiles were generated: (a) nonadherence, (b) lapse/readoption of physical activity, and (c) adherence. Internalization of walking behavior was key to adherence. Satisfaction of the needs for competence and relatedness were central for participation during exercise at the adoption stages, and autonomy was particularly pertinent in facilitating adherence. Those who lapsed and restarted physical activity experienced feelings of autonomy at the point of readoption. Sources of support were driving forces in the adoption and adherence phases.

  17. Climatological characteristics of high altitude wind shear and lapse rate layers

    NASA Technical Reports Server (NTRS)

    Ehernberger, L. J.; Guttman, N. B.

    1981-01-01

    Indications of the climatological distribution of wind shear and temperature lapse and inversion rates as observed by rawinsonde measurements over the western United States are recorded. Frequencies of the strongest shear, lapse rates, and inversion layer strengths were observed for a 1 year period of record and were tabulated for the lower troposphere, the upper troposphere, and five altitude intervals in the lower stratosphere. Selected bivariate frequencies were also tabulated. Strong wind shears, lapse rates, and inversion are observed less frequently as altitude increases from 175 millibars to 20 millibars. On a seasonal basis the frequencies were higher in winter than in summer except for minor influences due to increased tropopause altitude in summer and the stratospheric wind reversal in the spring and fall.

  18. Psychological symptoms, smoking lapse behavior, and the mediating effects of nicotine withdrawal symptoms: A laboratory study.

    PubMed

    Ameringer, Katherine J; Leventhal, Adam M

    2015-03-01

    The influence of psychological symptoms on smoking-lapse behavior is critical to understand. However, this relationship is obscured by comorbidity across multiple forms of psychological symptoms and their overlap with nicotine withdrawal. To address these challenges, we constructed a structural model of latent factors underlying 9 manifest scales of affective and behavioral symptoms and tested relations between latent factors and manifest scale residuals with nicotine withdrawal and smoking lapse in a laboratory analog task. Adult daily smokers (N = 286) completed a baseline session at which several forms of affective and behavioral symptoms were assessed and 2 experimental sessions (i.e., following 16 hr of smoking abstinence and following regular smoking), during which withdrawal symptoms and delay of smoking in exchange for monetary reinforcement, as an analogue for lapse propensity, were measured. A single second-order factor of general psychological maladjustment associated with more severe withdrawal-like symptoms, which in turn associated with shorter delay of smoking. The first-order factors, which tapped qualitatively unique domains of psychological symptoms (low positive affect, negative affect, disinhibition), and the manifest scale residuals provided little predictive power beyond the second-order factor with regard to lapse behavior. Relations among general psychological maladjustment, withdrawal-like symptoms, and lapse were significant in both abstinent and nonabstinent conditions, suggesting that psychological maladjustment, and not nicotine withdrawal per se, accounted for the relation with lapse. These results highlight the potential for smoking-cessation strategies that target general psychological maladjustment processes and have implications for addressing withdrawal-like symptoms among individuals with psychological symptoms.

  19. Time-lapse in the IVF-lab: how should we assess potential benefit?

    PubMed

    Armstrong, S; Vail, A; Mastenbroek, S; Jordan, V; Farquhar, C

    2015-01-01

    Time-lapse imaging of embryos has been widely introduced to fertility laboratories worldwide with the aim of identifying the best quality embryos to transfer that will ultimately improve IVF success rates. In this opinion paper, we explore the lack of evidence of benefit of this novel intervention, analyse the methodological flaws of current studies, offer ideal study designs that assess the various features of time-lapse imaging, and discuss forthcoming studies. In particular, we emphasize the ethical aspects of hastily adopting a costly technology without current high level evidence of improved live birth rates, safety and cost effectiveness.

  20. Advances in interpretation of subsurface processes with time-lapse electrical imaging

    SciTech Connect

    Singha, Kamini; Day-Lewis, Frederick D.; Johnson, Timothy C.; Slater, Lee D.

    2015-03-15

    Electrical geophysical methods, including electrical resistivity, time-domain induced polarization, and complex resistivity, have become commonly used to image the near subsurface. Here, we outline their utility for time-lapse imaging of hydrological, geochemical, and biogeochemical processes, focusing on new instrumentation, processing, and analysis techniques specific to monitoring. We review data collection procedures, parameters measured, and petrophysical relationships and then outline the state of the science with respect to inversion methodologies, including coupled inversion. We conclude by highlighting recent research focused on innovative applications of time-lapse imaging in hydrology, biology, ecology, and geochemistry, among other areas of interest.

  1. Lapses in Sustained Attention and Their Relation to Executive Control and Fluid Abilities: An Individual Differences Investigation

    ERIC Educational Resources Information Center

    Unsworth, Nash; Redick, Thomas S.; Lakey, Chad E.; Young, Diana L.

    2010-01-01

    A latent variable analysis was conducted to examine the nature of individual differences in lapses of attention and their relation to executive and fluid abilities. Participants performed a sustained attention task along with multiple measures of executive control and fluid abilities. Lapses of attention were indexed based on the slowest reaction…

  2. 37 CFR 1.317 - Lapsed patents; delayed payment of balance of issue fee.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... payment of balance of issue fee. 1.317 Section 1.317 Patents, Trademarks, and Copyrights UNITED STATES... Processing Provisions Allowance and Issue of Patent § 1.317 Lapsed patents; delayed payment of balance of... is required at the time the issue fee is paid, any remaining balance of the issue fee is to be...

  3. 37 CFR 1.317 - Lapsed patents; delayed payment of balance of issue fee.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... payment of balance of issue fee. 1.317 Section 1.317 Patents, Trademarks, and Copyrights UNITED STATES... Processing Provisions Allowance and Issue of Patent § 1.317 Lapsed patents; delayed payment of balance of... is required at the time the issue fee is paid, any remaining balance of the issue fee is to be...

  4. 37 CFR 1.317 - Lapsed patents; delayed payment of balance of issue fee.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... payment of balance of issue fee. 1.317 Section 1.317 Patents, Trademarks, and Copyrights UNITED STATES... Processing Provisions Allowance and Issue of Patent § 1.317 Lapsed patents; delayed payment of balance of... is required at the time the issue fee is paid, any remaining balance of the issue fee is to be...

  5. 37 CFR 1.317 - Lapsed patents; delayed payment of balance of issue fee.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... payment of balance of issue fee. 1.317 Section 1.317 Patents, Trademarks, and Copyrights UNITED STATES... Processing Provisions Allowance and Issue of Patent § 1.317 Lapsed patents; delayed payment of balance of... is required at the time the issue fee is paid, any remaining balance of the issue fee is to be...

  6. MathLTWA: Multiple lapse time window analysis using Wolfram Mathematica 7

    NASA Astrophysics Data System (ADS)

    Del Pezzo, Edoardo; Bianco, Francesca

    2010-10-01

    The MATHCAD 2000 professional code to perform the Multiple Lapse Time Analysis (MLTWA) has been revised and rewritten in MATHEMATICA 7. The new code contains two new procedures to find the minimum of the misfit function between observation and model and a new example of application to real data from Chamoli earthquake aftershock sequence.

  7. 2D Time-lapse Seismic Tomography Using An Active Time Constraint (ATC) Approach

    EPA Science Inventory

    We propose a 2D seismic time-lapse inversion approach to image the evolution of seismic velocities over time and space. The forward modeling is based on solving the eikonal equation using a second-order fast marching method. The wave-paths are represented by Fresnel volumes rathe...

  8. A Typology of University Ethical Lapses: Types, Levels of Seriousness, and Originating Location

    ERIC Educational Resources Information Center

    Kelley, Patricia C.; Chang, Pepe Lee

    2007-01-01

    Scandals ranging from National Collegiate Athletic Association (NCAA) violations to falsified research results have fueled criticism of America's universities. Sports violations, research manipulation, gender discrimination, and other ethical lapses affect an entire institution as they have a spillover effect on its reputation. The results of…

  9. Stochastic Time-lapse Seismic Inversion with a Hybrid Starting Model and Double-difference Data

    NASA Astrophysics Data System (ADS)

    Tao, Y.; Sen, M. K.; Zhang, R.; Spikes, K.

    2012-12-01

    We propose a robust stochastic time-lapse seismic inversion strategy with an application of monitoring a CO2 injection site. This workflow involves a baseline inversion using a hybrid starting model that combines a fractal prior and the low-frequency prior from well log data. This starting model extracts fractal statistics of the well data to provide an estimate of the null space. A second step of this workflow is to use a double-difference inversion scheme to focus on the local areas where time-lapse changes have occurred as a result of injecting CO2 into the reservoir. For this step, simulated data using the inverted prior from the baseline model and the difference between the baseline and repeat data are summed to produce the virtual repeat data. We use an error function that incorporates the model norms to regularize the inversion process. The seismic data are pre-processed using a local correlation based warping method to register different time-lapse datasets. The stochastic optimization method used here is very fast simulated annealing, where the updated model parameters are drawn from a temperature dependent Cauchy-like perturbation of current model parameters. Synthetic data show that double-difference inversion shows better result than a conventional two-pass approach. Inverted field data from Cranfield site shows time-lapse impedance changes that are consistent with CO2 injection effects.

  10. Dynamic Association between Negative Affect and Alcohol Lapses following Alcohol Treatment

    ERIC Educational Resources Information Center

    Witkiewitz, Katie; Villarroel, Nadia Aracelliz

    2009-01-01

    Clinical research has found a strong association between negative affect and returning to alcohol use after a period of abstinence. Yet little is known about the probability of a lapse given a particular level of negative affect or whether there is a reciprocal relationship between negative affect and alcohol use across time. The goal of the…

  11. An Investigation of Relationships Among Question Level, Response Level and Lapse Time

    ERIC Educational Resources Information Center

    Arnold, Daniel S.; And Others

    1973-01-01

    Studied relationships among questioning lapse time'' and the cognitive levels of teachers' questions and youngsters' responses, using Bloom's taxonomy and tape recordings in student teaching. Concluded that teachers' questions above the memory level could serve as a mechanism for promoting youngsters' learning at higher cognitive levels. (CC)

  12. Feasibility of monitoring gas hydrate production with time-lapse VSP

    SciTech Connect

    Kowalsky, M.B.; Nakagawa, S.; Moridis, G.J.

    2009-11-01

    In this work we begin to examine the feasibility of using time-lapse seismic methods-specifically the vertical seismic profiling (VSP) method-for monitoring changes in hydrate accumulations that are predicted to occur during production of natural gas.

  13. Automated time-lapse microscopy and high-resolution tracking of cell migration

    SciTech Connect

    Fotos, Joseph S.; Vivek, Patel P.; Karin, Norm J.; Temburni, Murali; Koh, John T.; Galileo, Deni S.

    2006-08-09

    The study of cell motility is greatly enhanced by using a fully-automated high-throughput time-lapse microscopy system that is capable of collecting and analyzing data (1) from closely-spaced time points (seconds to minutes), (2) over long periods (hours to days), (3) from multiple areas of interest, (4) under several different experimental conditions simultaneously. Time-lapse video images collected under phase contrast and fluorescent illumination were analyzed using parameters of migration velocity, total accumulated distance (path length), and directionality for individual cells or for averaged cell populations. Quantitation of ''scratch'' or ''wound healing'' assays revealed unique motility dynamics of drug-treated and adhesion molecule-transfected cells with high resolution and, thus, is a vast distinct improvement of current methods. Several fluorescent vital labeling methods commonly used for end-point analyses, including GFP expression, were evaluated and most were useful for time-lapse studies under specific conditions. For example, fluorescently-labeled tumor cells were seeded onto cell monolayers expressing ectopic adhesion molecules displayed altered migration velocities compared to tumor cells plated directly onto culture dishes. The techniques described here revealed cell motility behavior not discernable by previously-used methods. We propose that quantitative time-lapse video analysis will foster the creation new cell motility assays, and increase the resolution and accuracy of existing assays.

  14. Probabilistic 3-D time-lapse inversion of magnetotelluric data: application to an enhanced geothermal system

    NASA Astrophysics Data System (ADS)

    Rosas-Carbajal, M.; Linde, N.; Peacock, J.; Zyserman, F. I.; Kalscheuer, T.; Thiel, S.

    2015-12-01

    Surface-based monitoring of mass transfer caused by injections and extractions in deep boreholes is crucial to maximize oil, gas and geothermal production. Inductive electromagnetic methods, such as magnetotellurics, are appealing for these applications due to their large penetration depths and sensitivity to changes in fluid conductivity and fracture connectivity. In this work, we propose a 3-D Markov chain Monte Carlo inversion of time-lapse magnetotelluric data to image mass transfer following a saline fluid injection. The inversion estimates the posterior probability density function of the resulting plume, and thereby quantifies model uncertainty. To decrease computation times, we base the parametrization on a reduced Legendre moment decomposition of the plume. A synthetic test shows that our methodology is effective when the electrical resistivity structure prior to the injection is well known. The centre of mass and spread of the plume are well retrieved. We then apply our inversion strategy to an injection experiment in an enhanced geothermal system at Paralana, South Australia, and compare it to a 3-D deterministic time-lapse inversion. The latter retrieves resistivity changes that are more shallow than the actual injection interval, whereas the probabilistic inversion retrieves plumes that are located at the correct depths and oriented in a preferential north-south direction. To explain the time-lapse data, the inversion requires unrealistically large resistivity changes with respect to the base model. We suggest that this is partly explained by unaccounted subsurface heterogeneities in the base model from which time-lapse changes are inferred.

  15. Influence of shallow infiltration on time-lapse ERT: Experience of advanced interpretation

    NASA Astrophysics Data System (ADS)

    Clément, Rémi; Descloitres, Marc; Günther, Thomas; Ribolzi, Olivier; Legchenko, Anatoli

    2009-10-01

    Previous time-lapse Electrical Resistivity Tomography (ERT) studies have experienced difficulties in reconstructing reliable calculated resistivity changes in the subsurface. Increases or decreases of resistivity appear in the calculated ERT image where no changes were noted in the subsurface, leading to erroneous hydrological interpretations of the geophysical results. In this article, we investigate how a variation of actual resistivity with time and at shallow depth can influence time-lapse ERT results and produce resistivity artefacts at depth. We use 1 and 2-D numerical modelling to simulate infiltration scenarios. Using a standard time-lapse inversion, we demonstrate the resistivity artefact production according to the electrode spacing parameter. We used an advanced inversion methodology with a decoupling line at shallow depth to attenuate or remove resistivity artefacts. We also applied this methodology to a field data set obtained in a semi-arid environment in Burkina Faso, West Africa. Here, time-lapse ERT shows several resistivity artefacts of calculated resistivity if a standard inversion is used. We demonstrate the importance of a dense sampling of shallow resistivity variations at shallow depth. Advanced interpretation allows us to significantly attenuate or remove the resistivity artefact production at intermediate depth and produce reliable interpretation of hydrological processes.

  16. Knowledge of Ethical Lapses and Other Experiences on Clinical Licensure Examinations.

    ERIC Educational Resources Information Center

    Feil, Philip; Meeske, Jessica; Fortman, Jared

    1999-01-01

    A survey of 429 general dentists attempted to verify anecdotal reports of ethical lapses in clinical dental licensing examinations. It found significant occurrence of not arranging followup care for the patient even though indicated, intentional creation of lesions, premature treatment for the purpose of the examinations, coercing patients into…

  17. Time-lapse motion picture technique applied to the study of geological processes

    USGS Publications Warehouse

    Miller, R.D.; Crandell, D.R.

    1959-01-01

    Light-weight, battery-operated timers were built and coupled to 16-mm motion-picture cameras having apertures controlled by photoelectric cells. The cameras were placed adjacent to Emmons Glacier on Mount Rainier. The film obtained confirms the view that exterior time-lapse photography can be applied to the study of slow-acting geologic processes.

  18. Very Large Potential Temperature Lapse Rates and Low Turbulence Levels during Spring Thaw on the Prairies.

    NASA Astrophysics Data System (ADS)

    Leahey, D. M.; Hansen, M. C.; Schroeder, M. B.

    1996-11-01

    Observations show that two phenomena that are generally considered mutually exclusive occur both night and day during spring thaw over flat cultivated prairies: extremely large potential temperature lapse rates and low levels of atmospheric turbulence. Magnitudes of the large lapse rates routinely exceeded 20°C (100 m)1, whereas levels of turbulence during night and day were at values usually associated with moderately stable and near neutral conditions, respectively. Coexistence of these phenomena occurs during the time of year when a significantly large portion of the prairie is characterized by water and/or ice while the remainder comprises bare soil surfaces. Whereas freezing water is a sensible heat source during the night and melting ice a heat sink during the day, the bare soil acts in a reverse manner being a heat sink during the night and a source during the day. Air moving over the prairie surface is, therefore, subject to, both day and night, an alternating succession of warm and cool surfaces.Observed boundary layer depths characterized by the very large lapse rates were about 10 m in depth. Calculations based on the first law of thermodynamics show that these depths are consistent with sensible heat fluxes from the prairie surface of about 2 W m2. Assessments of these small heat fluxes through applications of the energy balance equation show that they are in agreement with the known behavior of melting ice and freezing water during spring thaw.Extremely large potential temperature lapse rates and low levels of turbulence seem, therefore, to occur because small heat fluxes are being introduced into the air on an interruptible basis. Very large lapse rates persist because the lack of a sustained heat flux does not allow for development of the vigorous turbulence needed for their eradication.

  19. Developing an EEG-based on-line closed-loop lapse detection and mitigation system

    PubMed Central

    Wang, Yu-Te; Huang, Kuan-Chih; Wei, Chun-Shu; Huang, Teng-Yi; Ko, Li-Wei; Lin, Chin-Teng; Cheng, Chung-Kuan; Jung, Tzyy-Ping

    2014-01-01

    In America, 60% of adults reported that they have driven a motor vehicle while feeling drowsy, and at least 15–20% of fatal car accidents are fatigue-related. This study translates previous laboratory-oriented neurophysiological research to design, develop, and test an On-line Closed-loop Lapse Detection and Mitigation (OCLDM) System featuring a mobile wireless dry-sensor EEG headgear and a cell-phone based real-time EEG processing platform. Eleven subjects participated in an event-related lane-keeping task, in which they were instructed to manipulate a randomly deviated, fixed-speed cruising car on a 4-lane highway. This was simulated in a 1st person view with an 8-screen and 8-projector immersive virtual-reality environment. When the subjects experienced lapses or failed to respond to events during the experiment, auditory warning was delivered to rectify the performance decrements. However, the arousing auditory signals were not always effective. The EEG spectra exhibited statistically significant differences between effective and ineffective arousing signals, suggesting that EEG spectra could be used as a countermeasure of the efficacy of arousing signals. In this on-line pilot study, the proposed OCLDM System was able to continuously detect EEG signatures of fatigue, deliver arousing warning to subjects suffering momentary cognitive lapses, and assess the efficacy of the warning in near real-time to rectify cognitive lapses. The on-line testing results of the OCLDM System validated the efficacy of the arousing signals in improving subjects' response times to the subsequent lane-departure events. This study may lead to a practical on-line lapse detection and mitigation system in real-world environments. PMID:25352773

  20. Formation of medical student professional identity: categorizing lapses of professionalism, and the learning environment

    PubMed Central

    2014-01-01

    Background Acquiring the values of medical professionalism has become a critical issue in medical education. The purpose of this study was to identify lapses in professionalism witnessed by medical students during their four year MD curriculum, and to categorize, from the students’ perspective, who was responsible and the settings in which these occurred. Methods An electronic survey, developed by faculty and medical students, was sent to all students with two email reminders. It included quantitative responses and some open-ended opportunities for comments. All analyses were performed with SAS version 9.1. Results The response rate was 45.6% (255 of 559 students) for all four years of the medical school curriculum. Thirty six percent of students had witnessed or been part of an exemplary demonstration of professionalism; 64% responded that they had witnessed a lapse of professionalism. At the pre-clerkship level, the most frequent lapses involved students: arrogance (42.2%), impairment (24.2%), followed by cultural or religious insensitivity (20.5%). At the clerkship level of training, where students are exposed to real clinical situations, the lapses involved primarily faculty (including preceptor and clinician) or other staff; these included arrogance (55.3%), breach of confidentiality (28.3%), and cultural or religious insensitivity (26.6%); impairment involved mostly students (25.5%). These findings are analyzed from the perspective of role modeling by faculty and in the context of the learning environment. Conclusions Medical students witnessed a lapse of professionalism involving both fellow students as well as faculty and administrative staff, in several domains. Results from this study emphasize the importance of role modeling and the need for faculty development, to improve the learning environment. This study adds to the limited emerging literature on the forces that influence medical student professional identity formation. PMID:25004924

  1. Developing an EEG-based on-line closed-loop lapse detection and mitigation system.

    PubMed

    Wang, Yu-Te; Huang, Kuan-Chih; Wei, Chun-Shu; Huang, Teng-Yi; Ko, Li-Wei; Lin, Chin-Teng; Cheng, Chung-Kuan; Jung, Tzyy-Ping

    2014-01-01

    In America, 60% of adults reported that they have driven a motor vehicle while feeling drowsy, and at least 15-20% of fatal car accidents are fatigue-related. This study translates previous laboratory-oriented neurophysiological research to design, develop, and test an On-line Closed-loop Lapse Detection and Mitigation (OCLDM) System featuring a mobile wireless dry-sensor EEG headgear and a cell-phone based real-time EEG processing platform. Eleven subjects participated in an event-related lane-keeping task, in which they were instructed to manipulate a randomly deviated, fixed-speed cruising car on a 4-lane highway. This was simulated in a 1st person view with an 8-screen and 8-projector immersive virtual-reality environment. When the subjects experienced lapses or failed to respond to events during the experiment, auditory warning was delivered to rectify the performance decrements. However, the arousing auditory signals were not always effective. The EEG spectra exhibited statistically significant differences between effective and ineffective arousing signals, suggesting that EEG spectra could be used as a countermeasure of the efficacy of arousing signals. In this on-line pilot study, the proposed OCLDM System was able to continuously detect EEG signatures of fatigue, deliver arousing warning to subjects suffering momentary cognitive lapses, and assess the efficacy of the warning in near real-time to rectify cognitive lapses. The on-line testing results of the OCLDM System validated the efficacy of the arousing signals in improving subjects' response times to the subsequent lane-departure events. This study may lead to a practical on-line lapse detection and mitigation system in real-world environments. PMID:25352773

  2. Developing an EEG-based on-line closed-loop lapse detection and mitigation system.

    PubMed

    Wang, Yu-Te; Huang, Kuan-Chih; Wei, Chun-Shu; Huang, Teng-Yi; Ko, Li-Wei; Lin, Chin-Teng; Cheng, Chung-Kuan; Jung, Tzyy-Ping

    2014-01-01

    In America, 60% of adults reported that they have driven a motor vehicle while feeling drowsy, and at least 15-20% of fatal car accidents are fatigue-related. This study translates previous laboratory-oriented neurophysiological research to design, develop, and test an On-line Closed-loop Lapse Detection and Mitigation (OCLDM) System featuring a mobile wireless dry-sensor EEG headgear and a cell-phone based real-time EEG processing platform. Eleven subjects participated in an event-related lane-keeping task, in which they were instructed to manipulate a randomly deviated, fixed-speed cruising car on a 4-lane highway. This was simulated in a 1st person view with an 8-screen and 8-projector immersive virtual-reality environment. When the subjects experienced lapses or failed to respond to events during the experiment, auditory warning was delivered to rectify the performance decrements. However, the arousing auditory signals were not always effective. The EEG spectra exhibited statistically significant differences between effective and ineffective arousing signals, suggesting that EEG spectra could be used as a countermeasure of the efficacy of arousing signals. In this on-line pilot study, the proposed OCLDM System was able to continuously detect EEG signatures of fatigue, deliver arousing warning to subjects suffering momentary cognitive lapses, and assess the efficacy of the warning in near real-time to rectify cognitive lapses. The on-line testing results of the OCLDM System validated the efficacy of the arousing signals in improving subjects' response times to the subsequent lane-departure events. This study may lead to a practical on-line lapse detection and mitigation system in real-world environments.

  3. Using Digital Time-Lapse Videos to Teach Geomorphic Processes to Undergraduates

    NASA Astrophysics Data System (ADS)

    Clark, D. H.; Linneman, S. R.; Fuller, J.

    2004-12-01

    We demonstrate the use of relatively low-cost, computer-based digital imagery to create time-lapse videos of two distinct geomorphic processes in order to help students grasp the significance of the rates, styles, and temporal dependence of geologic phenomena. Student interviews indicate that such videos help them to understand the relationship between processes and landform development. Time-lapse videos have been used extensively in some sciences (e.g., biology - http://sbcf.iu.edu/goodpract/hangarter.html, meteorology - http://www.apple.com/education/hed/aua0101s/meteor/, chemistry - http://www.chem.yorku.ca/profs/hempsted/chemed/home.html) to demonstrate gradual processes that are difficult for many students to visualize. Most geologic processes are slower still, and are consequently even more difficult for students to grasp, yet time-lapse videos are rarely used in earth science classrooms. The advent of inexpensive web-cams and computers provides a new means to explore the temporal dimension of earth surface processes. To test the use of time-lapse videos in geoscience education, we are developing time-lapse movies that record the evolution of two landforms: a stream-table delta and a large, natural, active landslide. The former involves well-known processes in a controlled, repeatable laboratory experiment, whereas the latter tracks the developing dynamics of an otherwise poorly understood slope failure. The stream-table delta is small and grows in ca. 2 days; we capture a frame on an overhead web-cam every 3 minutes. Before seeing the video, students are asked to hypothesize how the delta will grow through time. The final time-lapse video, ca. 20-80 MB, elegantly shows channel migration, progradation rates, and formation of major geomorphic elements (topset, foreset, bottomset beds). The web-cam can also be "zoomed-in" to show smaller-scale processes, such as bedload transfer, and foreset slumping. Post-lab tests and interviews with students indicate that

  4. The influence of surface characteristics on lapse rates and temperature profiles in areas of complex terrain

    NASA Astrophysics Data System (ADS)

    Pepin, N. C.; Pike, G.; Fower, D.; Schaefer, M.

    2012-12-01

    Temperatures near the ground are often decoupled from free-air equivalents, particularly in areas of complex relief and at high latitudes where cold air drainage occurs particularly when radiation balances become negative. This means that it is hard to predict spatial patterns of surface temperature in such regions. In this study several years of intensive field measurements in complex terrain in northern Finland (Kevo) and Sweden (Abisko) allow detailed examination of the interaction between land surface characteristics (including cryosphere), vegetation, and local/micro-climate in mountain basins. Temperature and vapour pressure were measured every 30 minutes for 5 years (2007-2012) at 60 sites at Kevo and for a winter season (September-June) at 52 sites in Abisko, ranging over 300/600 metres of elevation respectively. In Finland lapse rates vary considerably both seasonally and diurnally, the relative importance of seasonal and diurnal forcing changing throughout the year. The results show intense (up to +80 °C/km) and persistent inversion events during the winter months (NDJ) which are broken up by mechanical effects since there is no diurnal cycle. In the transition from winter into spring (FMA) these inversions still occur but increasing radiation imposes a diurnal pattern on their formation and destruction. As snow cover peaks in spring the interaction between surface albedo, land cover and radiation serves to amplify the diurnal cycle in lapse rates. Daytime lapse rates peak in spring because of an increase in albedo with elevation as dark trees give way to reflective snow. At night inversions rapidly reform. Summer lapse rates are modified (usually weakened) by the presence of open water at low elevations. In Abisko similar processes are shown to be at work, although since the valley system is more open and at a larger spatial scale, the range of lapse rate variability is slightly less and the influence of surface characteristics more subdued. Taken

  5. Time-lapse microgravity study of the Strengbach catchment (Vosges mountains, France)

    NASA Astrophysics Data System (ADS)

    Masson, Frédéric; Viville, Daniel; Pierret, Marie-Claire; Mouyen, Maxime; Hecker, Louis; Chabaux, François

    2012-06-01

    Time-lapse microgravity measurements can be used to monitor underground water storage changes. For the first time, this method has been applied to a relatively steeply sloped and forested watershed in a temperate climate. Spatial and temporal measurements were performed on the small granitic Strengbach catchment (Vosges Mountains, France) during the unusually dry spring of 2011. The survey consisted of 11 relative gravimeter measurements for 13 gravity stations from February to June 2011. Temporal variations are significantly different from one station to the other. Nevertheless, the variations have a clearly observable spatial consistency, which could be related to the climatology, the characteristics of the bedrocks and/or the topography. This preliminary result highlights the potential capacity of time-lapse microgravimetry in understanding and constraining the water mass movement within a complex watershed.

  6. TIME-LAPSE MODELING AND INVERSION OF CO2 SATURATION FOR SEQUESTRATION AND ENHANCED OIL RECOVERY

    SciTech Connect

    Mark A. Meadows

    2004-11-19

    In the fourth quarter of this DOE NETL project, they have developed an algorithm for generating time-lapse seismic anomalies from changes in fluid properties over time. This forward-modeling algorithm constitutes the first step in the inversion procedure of Phase III of the project. Examples were generated illustrating the flexibility of this approach. Additional activities in this reporting period included a trip by the Principal Investigator to the 7th International Conference on Greenhouse Gas Control Technologies (GHGT-7) in Vancouver, Canada, September 5-9, 2004. In the next quarter, they will work on the second step of the inversion procedure, namely, the inversion of the seismic time-lapse anomalies to obtain changes in fluid properties, and will continue investigating alternative methods for calculating properties of oil/brine/CO{sub 2} and brine/CO{sub 2} systems.

  7. Capturing Tissue Repair in Zebrafish Larvae with Time-lapse Brightfield Stereomicroscopy

    PubMed Central

    Lisse, Thomas S.; Brochu, Elizabeth A.; Rieger, Sandra

    2015-01-01

    The zebrafish larval tail fin is ideal for studying tissue regeneration due to the simple architecture of the larval fin-fold, which comprises of two layers of skin that enclose undifferentiated mesenchyme, and because the larval tail fin regenerates rapidly within 2-3 days. Using this system, we demonstrate a method for capturing the repair dynamics of the amputated tail fin with time-lapse video brightfield stereomicroscopy. We demonstrate that fin amputation triggers a contraction of the amputation wound and extrusion of cells around the wound margin, leading to their subsequent clearance. Fin regeneration proceeds from proximal to distal direction after a short delay. In addition, developmental growth of the larva can be observed during all stages. The presented method provides an opportunity for observing and analyzing whole tissue-scale behaviors such as fin development and growth in a simple microscope setting, which is easily adaptable to any stereomicroscope with time-lapse capabilities. PMID:25742070

  8. Freeze core sampling to validate time-lapse resistivity monitoring of the hyporheic zone.

    PubMed

    Toran, Laura; Hughes, Brian; Nyquist, Jonathan; Ryan, Robert

    2013-01-01

    A freeze core sampler was used to characterize hyporheic zone storage during a stream tracer test. The pore water from the frozen core showed tracer lingered in the hyporheic zone after the tracer had returned to background concentration in collocated well samples. These results confirmed evidence of lingering subsurface tracer seen in time-lapse electrical resistivity tomographs. The pore water exhibited brine exclusion (ion concentrations in ice lower than source water) in a sediment matrix, despite the fast freezing time. Although freeze core sampling provided qualitative evidence of lingering tracer, it proved difficult to quantify tracer concentration because the amount of brine exclusion during freezing could not be accurately determined. Nonetheless, the additional evidence for lingering tracer supports using time-lapse resistivity to detect regions of low fluid mobility within the hyporheic zone that can act as chemically reactive zones of importance in stream health.

  9. Volumetric monitoring of aqueous two phase system droplets using time-lapse optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Lee, J.; Bathany, C.; Ahn, Y.; Takayama, S.; Jung, W.

    2016-02-01

    We present a volumetric monitoring method to observe the morphological changes of aqueous two phase system (ATPS) droplets in a microfluidic system. Our method is based on time-lapse optical coherence tomography (OCT) which allows the study of the dynamics of ATPS droplets while visualizing their 3D structures and providing quantitative information on the droplets. In this study, we monitored the process of rehydration and deformation of an ATPS droplet in a microfluidic system and quantified the changes of its volume and velocity under both static and dynamic fluid conditions. Our results indicate that time-lapse OCT is a very promising tool to evaluate the unprecedented features of droplet-based microfluidics.

  10. Real-time motion discrimination considering variation of EMG signals associated with lapse of time.

    PubMed

    Shiraki, Masashi; Tsujiuchi, Nobutaka; Akihito, Ito; Yamamoto, Tetsushi

    2015-08-01

    This study proposes a motion discrimination method that considers the variation of electromyogram (EMG) signals associated with a lapse of time. In a previous study, we proposed a real-time discrimination method based on EMG signals of the forearm. Our method uses a hypersphere model as a discriminator. In motion discrimination using EMG signals, one problem is to maintain high discrimination accuracy over time because EMG signals change with a lapse of time. This study analyzed the effect of changes in EMG signals on our method. Based on analysis results, adding a relearning system of the decision criteria to the discrimination system was expected to be effective. We created a new motion discrimination method that contains the relearning system and experimentally verified its effectiveness. The motion discrimination system discriminated three hand motions, open, grasp, and pinch with discrimination accuracy above 90% in real-time (processing time below 300 ms) even after time elapsed. PMID:26736306

  11. TIME-LAPSE SEISMIC MODELING & INVERSION OF CO2 SATURATION FOR SEQUESTRATION AND ENHANCED OIL RECOVERY

    SciTech Connect

    Mark A. Meadows

    2006-03-31

    Injection of carbon dioxide (CO2) into subsurface aquifers for geologic storage/sequestration, and into subsurface hydrocarbon reservoirs for enhanced oil recovery, has become an important topic to the nation because of growing concerns related to global warming and energy security. In this project we developed new ways to predict and quantify the effects of CO2 on seismic data recorded over porous reservoir/aquifer rock systems. This effort involved the research and development of new technology to: (1) Quantitatively model the rock physics effects of CO2 injection in porous saline and oil/brine reservoirs (both miscible and immiscible). (2) Quantitatively model the seismic response to CO2 injection (both miscible and immiscible) from well logs (1D). (3) Perform quantitative inversions of time-lapse 4D seismic data to estimate injected CO2 distributions within subsurface reservoirs and aquifers. This work has resulted in an improved ability to remotely monitor the injected CO2 for safe storage and enhanced hydrocarbon recovery, predict the effects of CO2 on time-lapse seismic data, and estimate injected CO2 saturation distributions in subsurface aquifers/reservoirs. We applied our inversion methodology to a 3D time-lapse seismic dataset from the Sleipner CO2 sequestration project, Norwegian North Sea. We measured changes in the seismic amplitude and traveltime at the top of the Sleipner sandstone reservoir and used these time-lapse seismic attributes in the inversion. Maps of CO2 thickness and its standard deviation were generated for the topmost layer. From this information, we estimated that 7.4% of the total CO2 injected over a five-year period had reached the top of the reservoir. This inversion approach could also be applied to the remaining levels within the anomalous zone to obtain an estimate of the total CO2 injected.

  12. Calixarenes and cations: a time-lapse photography of the big-bang.

    PubMed

    Casnati, Alessandro

    2013-08-01

    The outstanding cation complexation properties emerging from the pioneering studies on calixarene ligands during a five-year period in the early 1980s triggered a big-bang burst of publications on such macrocycles that is still lasting at a distance of more than 30 years. A time-lapse photography of this timeframe is proposed which allows the readers to pinpoint the contributions of the different research groups.

  13. Evaluating four-dimensional time-lapse electrical resistivity tomography for monitoring DNAPL source zone remediation.

    PubMed

    Power, Christopher; Gerhard, Jason I; Karaoulis, Marios; Tsourlos, Panagiotis; Giannopoulos, Antonios

    2014-07-01

    Practical, non-invasive tools do not currently exist for mapping the remediation of dense non-aqueous phase liquids (DNAPLs). Electrical resistivity tomography (ERT) exhibits significant potential but has not yet become a practitioner's tool due to challenges in interpreting the survey results at real sites. This study explores the effectiveness of recently developed four-dimensional (4D, i.e., 3D space plus time) time-lapse surface ERT to monitor DNAPL source zone remediation. A laboratory experiment demonstrated the approach for mapping a changing NAPL distribution over time. A recently developed DNAPL-ERT numerical model was then employed to independently simulate the experiment, providing confidence that the DNAPL-ERT model is a reliable tool for simulating real systems. The numerical model was then used to evaluate the potential for this approach at the field scale. Four DNAPL source zones, exhibiting a range of complexity, were initially simulated, followed by modeled time-lapse ERT monitoring of complete DNAPL remediation by enhanced dissolution. 4D ERT inversion provided estimates of the regions of the source zone experiencing mass reduction with time. Results show that 4D time-lapse ERT has significant potential to map both the outline and the center of mass of the evolving treated portion of the source zone to within a few meters in each direction. In addition, the technique can provide a reasonable, albeit conservative, estimate of the DNAPL volume remediated with time: 25% underestimation in the upper 2m and up to 50% underestimation at late time between 2 and 4m depth. The technique is less reliable for identifying cleanup of DNAPL stringers outside the main DNAPL body. Overall, this study demonstrates that 4D time-lapse ERT has potential for mapping where and how quickly DNAPL mass changes in real time during site remediation.

  14. An instrumented sample holder for time-lapse microtomography measurements of snow under advective airflow

    NASA Astrophysics Data System (ADS)

    Ebner, P. P.; Grimm, S. A.; Schneebeli, M.; Steinfeld, A.

    2014-09-01

    An instrumented sample holder was developed for time-lapse microtomography of snow samples to enable in situ nondestructive spatial and temporal measurements under controlled advective airflows, temperature gradients, and air humidities. The design was aided by computational fluid dynamics simulations to evaluate the airflow uniformity across the snow sample. Morphological and mass transport properties were evaluated during a 4-day test run. This instrument allows the experimental characterization of metamorphism of snow undergoing structural changes with time.

  15. Analysis of the repeatability of time-lapse 3d vsp multicomponent surveys, delhi field

    NASA Astrophysics Data System (ADS)

    Carvalho, Mariana Fernandes de

    Delhi Field is a producing oil field located in northeastern Louisiana. In order to monitor the CO2 sweep efficiency, time-lapse 3D seismic data have been acquired in this area. Time-lapse studies are increasingly used to evaluate changes in the seismic response induced by the production of hydrocarbons or the injection of water, CO2 or steam into a reservoir. A 4D seismic signal is generated by a combination of production and injection effects within the reservoir as well as non-repeatability effects. In order to get reliable results from time-lapse seismic methods, it is important to distinguish the production and injection effects from the non-repeatability effects in the 4D seismic signal. Repeatability of 4D land seismic data is affected by several factors. The most significant of them are: source and receiver geometry inaccuracies, differences in seismic sources signatures, variations in the immediate near surface and ambient non-repeatable noise. In this project, two 3D multicomponent VSP surveys acquired in Delhi Field were used to quantify the relative contribution of each factor that can affect the repeatability in land seismic data. The factors analyzed in this study were: source and receiver geometry inaccura- cies, variations in the immediate near surface and ambient non-repeatable noise. This study showed that all these factors had a significant impact on the repeatability of the successive multicomponent VSP surveys in Delhi Field. This project also shows the advantages and disadvantages in the use of different repeata- bility metrics, normalized-root-mean-square (NRMS) difference and signal-to-distortion ratio (SDR) attribute, to evaluate the level of seismic repeatability between successive time-lapse seismic surveys. It is observed that NRMS difference is greatly influenced by time-shifts and that SDR attribute combined with the time-shift may give more distinct and representative repeatability information than the NRMS difference.

  16. Calixarenes and cations: a time-lapse photography of the big-bang.

    PubMed

    Casnati, Alessandro

    2013-08-01

    The outstanding cation complexation properties emerging from the pioneering studies on calixarene ligands during a five-year period in the early 1980s triggered a big-bang burst of publications on such macrocycles that is still lasting at a distance of more than 30 years. A time-lapse photography of this timeframe is proposed which allows the readers to pinpoint the contributions of the different research groups. PMID:23792898

  17. Probabilistic 3-D time-lapse inversion of magnetotelluric data: Application to an enhanced geothermal system

    USGS Publications Warehouse

    Rosas-Carbajal, Marina; Linde, Nicolas; Peacock, Jared R.; Zyserman, F. I.; Kalscheuer, Thomas; Thiel, Stephan

    2015-01-01

    Surface-based monitoring of mass transfer caused by injections and extractions in deep boreholes is crucial to maximize oil, gas and geothermal production. Inductive electromagnetic methods, such as magnetotellurics, are appealing for these applications due to their large penetration depths and sensitivity to changes in fluid conductivity and fracture connectivity. In this work, we propose a 3-D Markov chain Monte Carlo inversion of time-lapse magnetotelluric data to image mass transfer following a saline fluid injection. The inversion estimates the posterior probability density function of the resulting plume, and thereby quantifies model uncertainty. To decrease computation times, we base the parametrization on a reduced Legendre moment decomposition of the plume. A synthetic test shows that our methodology is effective when the electrical resistivity structure prior to the injection is well known. The centre of mass and spread of the plume are well retrieved.We then apply our inversion strategy to an injection experiment in an enhanced geothermal system at Paralana, South Australia, and compare it to a 3-D deterministic time-lapse inversion. The latter retrieves resistivity changes that are more shallow than the actual injection interval, whereas the probabilistic inversion retrieves plumes that are located at the correct depths and oriented in a preferential north-south direction. To explain the time-lapse data, the inversion requires unrealistically large resistivity changes with respect to the base model. We suggest that this is partly explained by unaccounted subsurface heterogeneities in the base model from which time-lapse changes are inferred.

  18. Time-lapse AVO fluid inversion for dynamic reservoir characterization in Delhi Field, Louisiana

    NASA Astrophysics Data System (ADS)

    Putri, Indah Hermansyah

    In the development stage, CO2 injection is becoming more widely used in enhanced oil recovery (EOR). Delhi Oil Field is part of Phases XIII and XIV of the Reservoir Characterization Project (RCP) Colorado School of Mines. The focus of these phases is to monitor the effectiveness of the CO 2 injection in Delhi Field by using multicomponent time-lapse seismic data. In this study, I analyze the amplitude versus offset (AVO) response of the time-lapse P-wave seismic data in order to quantify the fluid probability in the field. RCP acquired four square miles of multicomponent time-lapse seismic in Delhi Field to characterize the field dynamically. RCP's two surveys, monitor 1 and monitor 2, were shot in 2010 and 2011 after the start of CO2 injection in November 2009. Time-lapse AVO modeling was performed. The modeling results show that both the top Tuscaloosa and Paluxy Formations are class III AVO, and change toward class IV AVO by increasing the CO2 saturation in the reservoir. In addition, the Paluxy Formation shows a consistent result between the synthetic and real data, however, the Tuscaloosa Formation is not consistent as it is affected by tuning. AVO fluid inversion (AFI) was performed on both the Tuscaloosa and Paluxy Formations in order to quantify the fluid probability in these formations. The inversion results are confirmed by the pseudo gamma ray model, the porosity model, the permeability model, the pressure model, and the production data. In the Tuscaloosa and Paluxy Formations, oil and CO2 are located in the good quality, high porosity, and high permeability sandstones. The presence of CO2 is also confirmed by the pressure interpretation. Furthermore, production data from both Tuscaloosa and Paluxy Formations confirm the fluid presence in the reservoir.

  19. Confocal time lapse imaging as an efficient method for the cytocompatibility evaluation of dental composites.

    PubMed

    Attik, Ghania Nina; Gritsch, Kerstin; Colon, Pierre; Grosgogeat, Brigitte

    2014-01-01

    It is generally accepted that in vitro cell material interaction is a useful criterion in the evaluation of dental material biocompatibility. The objective of this study was to use 3D CLSM time lapse confocal imaging to assess the in vitro biocompatibility of dental composites. This method provides an accurate and sensitive indication of viable cell rate in contact with dental composite extracts. The ELS extra low shrinkage, a dental composite used for direct restoration, has been taken as example. In vitro assessment was performed on cultured primary human gingival fibroblast cells using Live/Dead staining. Images were obtained with the FV10i confocal biological inverted system and analyzed with the FV10-ASW 3.1 Software. Image analysis showed a very slight cytotoxicity in the presence of the tested composite after 5 hours of time lapse. A slight decrease of cell viability was shown in contact with the tested composite extracts compared to control cells. The findings highlighted the use of 3D CLSM time lapse imaging as a sensitive method to qualitatively and quantitatively evaluate the biocompatibility behavior of dental composites.

  20. Dynamic association between negative affect and alcohol lapses following alcohol treatment.

    PubMed

    Witkiewitz, Katie; Villarroel, Nadia Aracelliz

    2009-08-01

    Clinical research has found a strong association between negative affect and returning to alcohol use after a period of abstinence. Yet little is known about the probability of a lapse given a particular level of negative affect or whether there is a reciprocal relationship between negative affect and alcohol use across time. The goal of the current study was to examine the association between negative affect and drinking behavior in the 1st year following alcohol treatment. The authors applied an associative latent transition analysis to the Project MATCH outpatient data (n = 952) and then replicated the model in the Project MATCH aftercare data (n = 774). Changes in drinking following treatment were significantly associated with current and prior changes in negative affect, and changes in negative affect were related to prior changes in drinking (effect size range = 0.13-0.33). The results supported the hypothesis that negative affect and alcohol lapses are dynamically linked and suggest that targeting the relationship between negative affect and alcohol use could greatly decrease the probability of lapses and improve alcohol treatment outcomes. PMID:19634957

  1. Automated time-lapse microscopy and high-resolution tracking of cell migration.

    PubMed

    Fotos, Joseph S; Patel, Vivek P; Karin, Norman J; Temburni, Murali K; Koh, John T; Galileo, Deni S

    2006-05-01

    We describe a novel fully automated high-throughput time-lapse microscopy system and evaluate its performance for precisely tracking the motility of several glioma and osteoblastic cell lines. Use of this system revealed cell motility behavior not discernable with conventional techniques by collecting data (1) from closely spaced time points (minutes), (2) over long periods (hours to days), (3) from multiple areas of interest, (4) in parallel under several different experimental conditions. Quantitation of true individual and average cell velocity and path length was obtained with high spatial and temporal resolution in "scratch" or "wound healing" assays. This revealed unique motility dynamics of drug-treated and adhesion molecule-transfected cells and, thus, this is a considerable improvement over current methods of measurement and analysis. Several fluorescent vital labeling methods commonly used for end-point analyses (GFP expression, DiO lipophilic dye, and Qtracker nanocrystals) were found to be useful for time-lapse studies under specific conditions that are described. To illustrate one application, fluorescently labeled tumor cells were seeded onto cell monolayers expressing ectopic adhesion molecules, and this resulted in consistently reduced tumor cell migration velocities. These highly quantitative time-lapse analysis methods will promote the creation of new cell motility assays and increase the resolution and accuracy of existing assays.

  2. Extended Time-lapse Intravital Imaging of Real-time Multicellular Dynamics in the Tumor Microenvironment.

    PubMed

    Harney, Allison S; Wang, Yarong; Condeelis, John S; Entenberg, David

    2016-01-01

    In the tumor microenvironment, host stromal cells interact with tumor cells to promote tumor progression, angiogenesis, tumor cell dissemination and metastasis. Multicellular interactions in the tumor microenvironment can lead to transient events including directional tumor cell motility and vascular permeability. Quantification of tumor vascular permeability has frequently used end-point experiments to measure extravasation of vascular dyes. However, due to the transient nature of multicellular interactions and vascular permeability, the kinetics of these dynamic events cannot be discerned. By labeling cells and vasculature with injectable dyes or fluorescent proteins, high-resolution time-lapse intravital microscopy has allowed the direct, real-time visualization of transient events in the tumor microenvironment. Here we describe a method for using multiphoton microscopy to perform extended intravital imaging in live mice to directly visualize multicellular dynamics in the tumor microenvironment. This method details cellular labeling strategies, the surgical preparation of a mammary skin flap, the administration of injectable dyes or proteins by tail vein catheter and the acquisition of time-lapse images. The time-lapse sequences obtained from this method facilitate the visualization and quantitation of the kinetics of cellular events of motility and vascular permeability in the tumor microenvironment. PMID:27341448

  3. Efficiency of time-lapse intervals and simple baits for camera surveys of wild pigs

    USGS Publications Warehouse

    Williams, B.L.; Holtfreter, R.W.; Ditchkoff, S.S.; Grand, J.B.

    2011-01-01

    Growing concerns surrounding established and expanding populations of wild pigs (Sus scrofa) have created the need for rapid and accurate surveys of these populations. We conducted surveys of a portion of the wild pig population on Fort Benning, Georgia, to determine if a longer time-lapse interval than had been previously used in surveys of wild pigs would generate similar detection results. We concurrently examined whether use of soured corn at camera sites affected the time necessary for pigs to locate a new camera site or the time pigs remained at a site. Our results suggest that a 9-min time-lapse interval generated dependable detection results for pigs and that soured corn neither attracted pigs to a site any quicker than plain, dry, whole-kernel corn, nor held them at a site longer. Maximization of time-lapse interval should decrease data and processing loads, and use of a simple, available bait should decrease cost and effort associated with more complicated baits; combination of these concepts should increase efficiency of wild pig surveys. ?? 2011 The Wildlife Society.

  4. Extended Time-lapse Intravital Imaging of Real-time Multicellular Dynamics in the Tumor Microenvironment

    PubMed Central

    Harney, Allison S.; Wang, Yarong; Condeelis, John S.; Entenberg, David

    2016-01-01

    In the tumor microenvironment, host stromal cells interact with tumor cells to promote tumor progression, angiogenesis, tumor cell dissemination and metastasis. Multicellular interactions in the tumor microenvironment can lead to transient events including directional tumor cell motility and vascular permeability. Quantification of tumor vascular permeability has frequently used end-point experiments to measure extravasation of vascular dyes. However, due to the transient nature of multicellular interactions and vascular permeability, the kinetics of these dynamic events cannot be discerned. By labeling cells and vasculature with injectable dyes or fluorescent proteins, high-resolution time-lapse intravital microscopy has allowed the direct, real-time visualization of transient events in the tumor microenvironment. Here we describe a method for using multiphoton microscopy to perform extended intravital imaging in live mice to directly visualize multicellular dynamics in the tumor microenvironment. This method details cellular labeling strategies, the surgical preparation of a mammary skin flap, the administration of injectable dyes or proteins by tail vein catheter and the acquisition of time-lapse images. The time-lapse sequences obtained from this method facilitate the visualization and quantitation of the kinetics of cellular events of motility and vascular permeability in the tumor microenvironment. PMID:27341448

  5. Measuring fast gene dynamics in single cells with time-lapse luminescence microscopy

    PubMed Central

    Mazo-Vargas, Anyimilehidi; Park, Heungwon; Aydin, Mert; Buchler, Nicolas E.

    2014-01-01

    Time-lapse fluorescence microscopy is an important tool for measuring in vivo gene dynamics in single cells. However, fluorescent proteins are limited by slow chromophore maturation times and the cellular autofluorescence or phototoxicity that arises from light excitation. An alternative is luciferase, an enzyme that emits photons and is active upon folding. The photon flux per luciferase is significantly lower than that for fluorescent proteins. Thus time-lapse luminescence microscopy has been successfully used to track gene dynamics only in larger organisms and for slower processes, for which more total photons can be collected in one exposure. Here we tested green, yellow, and red beetle luciferases and optimized substrate conditions for in vivo luminescence. By combining time-lapse luminescence microscopy with a microfluidic device, we tracked the dynamics of cell cycle genes in single yeast with subminute exposure times over many generations. Our method was faster and in cells with much smaller volumes than previous work. Fluorescence of an optimized reporter (Venus) lagged luminescence by 15–20 min, which is consistent with its known rate of chromophore maturation in yeast. Our work demonstrates that luciferases are better than fluorescent proteins at faithfully tracking the underlying gene expression. PMID:25232010

  6. Confocal Time Lapse Imaging as an Efficient Method for the Cytocompatibility Evaluation of Dental Composites

    PubMed Central

    Attik, Ghania Nina; Gritsch, Kerstin; Colon, Pierre; Grosgogeat, Brigitte

    2014-01-01

    It is generally accepted that in vitro cell material interaction is a useful criterion in the evaluation of dental material biocompatibility. The objective of this study was to use 3D CLSM time lapse confocal imaging to assess the in vitro biocompatibility of dental composites. This method provides an accurate and sensitive indication of viable cell rate in contact with dental composite extracts. The ELS extra low shrinkage, a dental composite used for direct restoration, has been taken as example. In vitro assessment was performed on cultured primary human gingival fibroblast cells using Live/Dead staining. Images were obtained with the FV10i confocal biological inverted system and analyzed with the FV10-ASW 3.1 Software. Image analysis showed a very slight cytotoxicity in the presence of the tested composite after 5 hours of time lapse. A slight decrease of cell viability was shown in contact with the tested composite extracts compared to control cells. The findings highlighted the use of 3D CLSM time lapse imaging as a sensitive method to qualitatively and quantitatively evaluate the biocompatibility behavior of dental composites. PMID:25406737

  7. Can arousing feedback rectify lapses in driving? Prediction from EEG power spectra

    NASA Astrophysics Data System (ADS)

    Lin, Chin-Teng; Huang, Kuan-Chih; Chuang, Chun-Hsiang; Ko, Li-Wei; Jung, Tzyy-Ping

    2013-10-01

    Objective. This study explores the neurophysiological changes, measured using an electroencephalogram (EEG), in response to an arousing warning signal delivered to drowsy drivers, and predicts the efficacy of the feedback based on changes in the EEG. Approach. Eleven healthy subjects participated in sustained-attention driving experiments. The driving task required participants to maintain their cruising position and compensate for randomly induced lane deviations using the steering wheel, while their EEG and driving performance were continuously monitored. The arousing warning signal was delivered to participants who experienced momentary behavioral lapses, failing to respond rapidly to lane-departure events (specifically the reaction time exceeded three times the alert reaction time). Main results. The results of our previous studies revealed that arousing feedback immediately reversed deteriorating driving performance, which was accompanied by concurrent EEG theta- and alpha-power suppression in the bilateral occipital areas. This study further proposes a feedback efficacy assessment system to accurately estimate the efficacy of arousing warning signals delivered to drowsy participants by monitoring the changes in their EEG power spectra immediately thereafter. The classification accuracy was up 77.8% for determining the need for triggering additional warning signals. Significance. The findings of this study, in conjunction with previous studies on EEG correlates of behavioral lapses, might lead to a practical closed-loop system to predict, monitor and rectify behavioral lapses of human operators in attention-critical settings.

  8. Using time-lapse photogrammetric method to study the terminal part of the Perito Moreno glacier

    NASA Astrophysics Data System (ADS)

    Lenzano, M. G.; Toth, C.; Lenzano, L.; Skvarca, P.; Smalley, R.

    2013-05-01

    The changes that are occurring in regional climate affect cryospheric environments and have a direct impact on the hydrological cycle. This work presents a feasibility study on the implementation and performance assessment of time-lapse processing ofstereo image sequence, acquired by calibrated cameras, in order to determine the altimetric and volumetric changes in the terminus of Perito Moreno (PM) glacier. This glacier is located at 50° 28' 23''S, 73° 02' 10''W at the Parque Nacional Los Glaciares, South Patagonia Icefield, Santa Cruz, Argentina. This glacier has experienced minor fluctuations or unusual behavior with respect to others glaciers since early 1960's until nowadays. The time-lapse technique allows for obtaining accurate estimates of deformations and velocity models. Digital Terrain Models (DTMs) were created from images, captured daily from April, 2012 to November, 2012, with a total of 182 days. One of the challenges was maintaining the accurate co-registration of the DTMs, which was essential for the information extraction. The differences between DTMs provided the velocities in the terminal part of PM for the period as it approaches the Peninsula de Magallanes. In additon, the DTMs were validated in order to determine the degree of uncertainty in the estimation of changes in the glacier. Keywords: time-lapse, DTMs, glacier volume change, Perito Moreno.

  9. A new stochastic inversion workflow for time-lapse data: hybrid starting model and double-difference inversion

    NASA Astrophysics Data System (ADS)

    Tao, Yi; Sen, Mrinal K.; Zhang, Rui; Spikes, Kyle T.

    2013-06-01

    Non-uniqueness presents challenges to seismic inverse problems, especially for time-lapse inversion where multiple inversions are needed for different vintages of seismic data. For time-lapse applications, the focus typically is to detect relatively small changes in seismic attributes at limited locations and to relate these differences to changes in the underlying physical properties. We propose a robust inversion workflow where the baseline inversion uses a starting model, which combines a high-frequency fractal component and a low-frequency component from well log data. This starting model provides an estimate of the null space based on fractal statistics of well data. To further focus on the localized changes, the inverted elastic parameters from the baseline model and the difference between two time-lapse data are summed together to produce the virtual time-lapse seismic data. This is known as double-difference inversion, which focuses primarily on the areas where time-lapse changes occur. The misfit function uses both data and model norms so that the ill-posedness of the inverse problem can be regularized. We pre-process the seismic data using a local correlation-based warping algorithm to register the time-lapse datasets. Finally, very fast simulated annealing, a nonlinear global search method, is used to minimize the misfit function. We demonstrate the effectiveness of our method with synthetic data and field data from Cranfield site used for CO2 sequestration studies.

  10. Enhancing Monitoring of Recharge-Related Environmental Remediation Processes Using Time-Lapse Seismic Refraction

    NASA Astrophysics Data System (ADS)

    Gaines, D. P.; Baker, G. S.; Hubbard, S. S.; Watson, D. B.; Jardine, P. M.

    2008-12-01

    The application of time-lapse seismic methods has typically been constrained to large-scale geologic investigations associated with petroleum exploration and exploitation; however, there is growing interest in monitoring near-surface phenomena (e.g., fluid flow in fractured or karstic geologic media, hydraulic recharge, and near-surface anthropogenic manipulations) using time-lapse seismic methods. In order to demonstrate the feasibility of detailed time-lapse seismic refraction tomography (TLSRT), we have monitored a perched water table at Oak Ridge National Laboratory (ORNL) Y-12 site in conjunction with a multi- disciplinary investigation of the fate and transport of contaminants. Due to remnant anthropogenic alterations of the site (i.e., replacement of 0-7 meters of contaminated soil with poorly sorted limestone gravel fill during construction of a seepage basin cap), the near surface hydrology is extremely complex and is hypothesized to have a large influence on infiltration, contaminant distribution, and contaminant remobilization. Understanding the impact of recharge-related flow and transport processes is especially important in regions that are subjected to significant precipitation events, such as at the ORNL Y-12 site. Here, TLSRT techniques are used to monitor the changing geometry of a perched water table located near the covered seepage basin, while coincident time-lapse surface electrical resistivity (TLERT) measurements are used to monitor changes in total dissolved solids due to recharge-related dilution. Data are collected at multiple time intervals (i.e., daily, weekly, monthly, yearly) and at varying stages in the evolution of the perch zone. The resulting seismic data are processed using wavepath eikonal tomography (WET) and differenced to identify areas of variable velocity associated with a change in saturation. The differenced tomograms correlate with discrete point water table measurements; however, the highly variable water table at this

  11. Time-lapse 3D ground-penetrating radar during plot-scale infiltration experiments

    NASA Astrophysics Data System (ADS)

    Allroggen, Niklas; Jackisch, Conrad; Tronicke, Jens

    2016-04-01

    In electrical resistive soils, surface-based ground-penetrating radar (GPR) is known as the geophysical tool providing the highest spatial resolution. Thus, 2D and 3D GPR surveys are commonly used for imaging subsurface structures or estimating soil moisture content. Due to its sensitivity to soil moisture and its non-invasive character, GPR provides a large potential to monitor soil moisture variation at high temporal and spatial resolution. As shown in previous experiments, the acquisition of time-lapse GPR data under field conditions requires a high data quality in terms of repeatability as well as spatial and temporal resolution. We present hydrogeophysical field experiments at the plot scale (1m x 1m), during which we record time-lapse 3D GPR. For GPR data acquisition, we use a pulseEKKO PRO GPR system equipped with a pair of 500 MHz antennas in combination with a specially designed metal-free measuring platform. Additionally, we collect tracer and soil moisture data, which are used to improve the interpretation of the GPR data with special focus on preferential flow paths and their structured advective flow field. After an accurate time-lapse GPR data processing, we compare 3D reflection events before and after infiltration and quantitatively interpret their relative time-shift in terms of soil moisture variations. Thereby, we are able to account for basically all of the infiltrated water. The first experiments demonstrate the general applicability of our experimental approach but are limited by the number of acquired time steps and measurement during the sprinkling period (the time of the highest temporal dynamics) are not possible at all. Based on this experience we redesign our experimental setup to continuously collect GPR data during irrigation and infiltration. Thereby, we strongly increase the temporal resolution of our measurements, improve the interpretability of the GPR data, and monitor the temporal and spatial dynamics of shallow subsurface

  12. Time-lapse Imaging of Active Lava Flows at Mt. Etna, Sicily

    NASA Astrophysics Data System (ADS)

    James, M. R.; Pinkerton, H.; Applegarth, L. J.; Hancock, A.; Slatcher, N.; Owen, J.; Calvari, S.; Ganci, G.

    2014-12-01

    Over the last ~6 years, remote time-lapse cameras have been deployed on Mt. Etna, Sicily, with a view to capturing the emplacement of a substantial lava flow field. Initial deployment of wildlife trail-style cameras in 2008 acquired data on lava channel processes during the 2008-9 eruption. In 2009, just in time to capture the dying phases of the eruption, an upgraded network of dSLRs was installed. The network has subsequently captured the steady growth of the New South East crater and the rapid emplacement of short-lived sheet flows that have accompanied the recent paroxysmal fire fountaining events. Most of the imagery has been acquired over distances of multiple kilometres, but the portability of the time-lapse setup has also allowed several opportunistic close range (hundreds of metres or less) deployments, to observe near-vent processes or effusion inside the Bocca Nuova crater. Here, we provide an overview of the equipment, and the approaches used to georeference the monoscopic time-lapse imagery through integrating with 3D data (e.g. existing DEMs, or data simultaneously collected by terrestrial laser scanner or photogrammetric techniques). The acquired observations of flow front emplacement, flow inflation, channel breaching and effusion rate variations that provide insight into the processes involved in long lived flow fields will be presented. Significant opportunities remain, for example, in the near real-time derivation of bulk rheological parameters, and integration with numerical flow models, and the challenges involved in using such imagery will be discussed.

  13. A state-space Bayesian framework for estimating biogeochemical transformations using time-lapse geophysical data

    SciTech Connect

    Chen, J.; Hubbard, S.; Williams, K.; Pride, S.; Li, L.; Steefel, C.; Slater, L.

    2009-04-15

    We develop a state-space Bayesian framework to combine time-lapse geophysical data with other types of information for quantitative estimation of biogeochemical parameters during bioremediation. We consider characteristics of end-products of biogeochemical transformations as state vectors, which evolve under constraints of local environments through evolution equations, and consider time-lapse geophysical data as available observations, which could be linked to the state vectors through petrophysical models. We estimate the state vectors and their associated unknown parameters over time using Markov chain Monte Carlo sampling methods. To demonstrate the use of the state-space approach, we apply it to complex resistivity data collected during laboratory column biostimulation experiments that were poised to precipitate iron and zinc sulfides during sulfate reduction. We develop a petrophysical model based on sphere-shaped cells to link the sulfide precipitate properties to the time-lapse geophysical attributes and estimate volume fraction of the sulfide precipitates, fraction of the dispersed, sulfide-encrusted cells, mean radius of the aggregated clusters, and permeability over the course of the experiments. Results of the case study suggest that the developed state-space approach permits the use of geophysical datasets for providing quantitative estimates of end-product characteristics and hydrological feedbacks associated with biogeochemical transformations. Although tested here on laboratory column experiment datasets, the developed framework provides the foundation needed for quantitative field-scale estimation of biogeochemical parameters over space and time using direct, but often sparse wellbore data with indirect, but more spatially extensive geophysical datasets.

  14. High-Resolution Time-Lapse Monitoring of Unsaturated Flow using Automated GPR Data Collection

    NASA Astrophysics Data System (ADS)

    Mangel, A. R.; Moysey, S. M.; Lytle, B. A.; Bradford, J. H.

    2015-12-01

    High-resolution ground-penetrating radar (GPR) data provide the detailed information required to image subsurface structures. Recent advances in GPR monitoring now also make it possible to study transient hydrologic processes, but high-speed data acquisition is critical for this application. We therefore highlight the capabilities of our automated system to acquire time-lapse, high-resolution multifold GPR data during infiltration of water into soils. The system design allows for fast acquisition of constant-offset (COP) and common-midpoint profiles (CMP) to monitor unsaturated flow at multiple locations. Qualitative interpretation of the unprocessed COPs can provide substantial information regarding the hydrologic response of the system, such as the complexities of patterns associated with the wetting of the soil and geophysical evidence of non-uniform propagation of a wetting front. While we find that unprocessed images are informative, we show that the spatial variability of velocity introduced by infiltration events can complicate the images and that migration of the data is an effective tool to improve interpretability of the time-lapse images. The ability of the system to collect high density CMP data also introduces the potential for improving the velocity model along with the image via reflection tomography in the post-migrated domain. We show that for both simulated and empirical time-lapse GPR profiles we can resolve a propagating wetting front in the soil that is in good agreement with the response of in-situ soil moisture measurements. The data from these experiments illustrate the importance of high-speed, high-resolution GPR data acquisition for obtaining insight about the dynamics of hydrologic events. Continuing research is aimed at improving the quantitative analysis of surface-based GPR monitoring data for identifying preferential flow in soils.

  15. Impact of Himalayas and Tibetan plateau uplift on regional climate and isotopic lapse rate

    NASA Astrophysics Data System (ADS)

    Botsyun, Svetlana; Sepulchre, Pierre; Donnadieu, Yannick

    2014-05-01

    The Himalayan-Tibet barrier dominates atmospheric circulation over central Asia and influences global climate. The current high Tibetan Plateau owes gradually during the north-northeastward penetration of the Indian subcontinent into the Eurasian continent and in 2 main stages of abrupt uplift due to break of Neo-Tethyan slab ~45 Ma and convective removal of Lhasa lithospheric root ~30-26Ma. Therefore, the northern plateau may have attained its present-day elevation not earlier than ~13Ma. Nevertheless, several studies based on stable-isotope paleoaltimetry call for paleoelevations at ~35Ma comparable with present-day. Understanding variation of isotopic lapse rate through the time and with changing of absolute value of elevations is critical to estimate paleoelevations and consequently carry on reliable paleoclimate reconstructions. For the purpose of simulating changes in isotopic composition of precipitation due to uplift of the Himalayas and Tibetan plateau the atmospheric general circulation model LMDZ-iso has been used. This model captures the spatial and temporal patterns of precipitation δ18O and their relationships with moisture transport from the westerlies and Indian monsoon. Three sensitivity experiments with modern and reduced elevations over the Himalayas-Tibet show changes in precipitation rate, precipitation δ18O, as well as moisture sources over India, East-Southern Asia and Himalaya and Tibetan plateau areas. Moreover, our results allow to capture changing in isotopic lapse rate with shifts of mountains height. This result has implications for the region uplift history, because oxygen isotope paleoaltimetry assumes that the modern δ18O lapse rate is representative of times when the mountains were lower.

  16. Time Lapse Hydrogeophysical Monitoring of Near Surface Processes over Long Time Periods

    NASA Astrophysics Data System (ADS)

    Endres, A.; Beynon, A.; Hansen, J.; Toy, C.; Steelman, C. M.

    2012-12-01

    The capacity to provide non-invasive time lapse monitoring that gives valuable insight into complex near-surface processes is a well-recognized attribute of hydrogeophysical techniques. Many of the studies using time lapse hydrogeophysical monitoring have been done for durations ranging from a day to several months. However, the nature of these processes can significantly change over the annual cycle of hydrological conditions. Hence, studies using time lapse hydrogeophysical monitoring for duration of one or more annual cycles are needed to investigate these longer term effects. The hydrogeophysics group at the University of Waterloo has undertaken an extensive series of field studies using high-resolution geophysical techniques to monitor several annual cycles of shallow soil moisture dynamics typical in temperate climates. In this work, our group have been employing a variety of geoelectrical methods, such as electrical resistivity tomography (ERT), ground conductivity meters (GCM) and high-frequency (i.e., 225-900 MHz) ground penetrating radar (GPR). In particular, we have investigated the ability of these geoelectrical methods to characterize both the vertical soil moisture distribution within the shallow vadose zone and the nature of its coupling with soil moisture variations at the surface. Our results clearly demonstrate the ability of these geoelectrical methods to characterize the evolution of near-surface hydrological processes over the annual cycle. In particular, we have been able to perform detailed monitoring of winter freeze-thaw processes which have major hydrological impacts in temperate regions. Further, our multi-year data sets have allowed us to investigate variation in hydrological processes between contrasting annual cycles (e.g., wet versus dry summer conditions).

  17. The contribution of attentional lapses to individual differences in visual working memory capacity.

    PubMed

    Adam, Kirsten C S; Mance, Irida; Fukuda, Keisuke; Vogel, Edward K

    2015-08-01

    Attentional control and working memory capacity are important cognitive abilities that substantially vary between individuals. Although much is known about how attentional control and working memory capacity relate to each other and to constructs like fluid intelligence, little is known about how trial-by-trial fluctuations in attentional engagement impact trial-by-trial working memory performance. Here, we employ a novel whole-report memory task that allowed us to distinguish between varying levels of attentional engagement in humans performing a working memory task. By characterizing low-performance trials, we can distinguish between models in which working memory performance failures are caused by either (1) complete lapses of attention or (2) variations in attentional control. We found that performance failures increase with set-size and strongly predict working memory capacity. Performance variability was best modeled by an attentional control model of attention, not a lapse model. We examined neural signatures of performance failures by measuring EEG activity while participants performed the whole-report task. The number of items correctly recalled in the memory task was predicted by frontal theta power, with decreased frontal theta power associated with poor performance on the task. In addition, we found that poor performance was not explained by failures of sensory encoding; the P1/N1 response and ocular artifact rates were equivalent for high- and low-performance trials. In all, we propose that attentional lapses alone cannot explain individual differences in working memory performance. Instead, we find that graded fluctuations in attentional control better explain the trial-by-trial differences in working memory that we observe.

  18. Epikarstic storage and doline structural characterization with time-lapse geophysics (seismic refraction & electrical resistivity)

    NASA Astrophysics Data System (ADS)

    Valois, R.; Galibert, P.; Guérin, R.; Mendes, M.; Plagnes, V.

    2011-12-01

    Karst formations are one of the most challenging environments in terms of groundwater, engineering and environmental issues. Geophysical methods can provide useful subsurface information in karst regions concerning groundwater vulnerability assessment, exploitation or hazard estimation. First, dolines are studied as preferential pathways for the protection of karstic aquifer in south France. Geophysics helps to characterize lateral and underground morphologies of such objects and is able to detect doline hidden by the soil cover too. Electrical resistivity and seismic refraction tomographies provide information about dolines filling and could help to propose a genesis scenario. Time-lapse resistivity measurements show that the studied doline is more vulnerable to infiltration on its sides than at its centre. The epikarst could be defined as a perched aquifer above the massive carbonate rocks; it constitutes a highly fractured zone, which water stock capacities. So, the epikarst was investigated with 3D seismic refraction and results show an important velocity anisotropy linked to the fracturing and weathering of the dolostone. The 3D model presents also some large heterogeneities: a corridor with highly weathered dolostone and an unweathered pinnacle. The corridor is probably situated on vertical joints, which have conducted aggressive water. The associated weathering with residual weathered-rock keeping its initial volume could create a "ghost-rock" corridor. So, the epikarst in the dolostones of the Causse du Larzac (France) seems to be composed by "ghost-rock" developed around a specific direction of fractures. Time-lapse electrical resistivity and seismic refraction velocity were carried out on this epikarst to observe the influence of water saturation on the measurements. The results show important variations for both seismic and electrical methods and are localized in the first 6 m: in the weathered zone. So, time-lapse measurements could more easily identify

  19. Time-Lapse Electrical Geophysical Monitoring of Amendment-Based Biostimulation

    SciTech Connect

    Johnson, Timothy C.; Versteeg, Roelof; Day-Lewis, Frederick D.; Major, William; Lane, John W.

    2015-12-02

    Biostimulation is increasingly used to accelerate microbial remediation of recalcitrant groundwater contaminants. Effective application of biostimulation requires successful emplacement of amendment in the contaminant target zone. Verification of remediation performance requires postemplacement assessment and contaminant monitoring. Sampling based approaches are expensive and provide low-density spatial and temporal information. Time-lapse electrical resistivity tomography (ERT) is an effective geophysical method for determining temporal changes in subsurface electrical conductivity. Because remedial amendments and biostimulation-related biogeochemical processes often change subsurface electrical conductivity, ERT can complement and enhance sampling-based approaches for assessing emplacement and monitoring biostimulation-based remediation. Field studies demonstrating the ability of time-lapse ERT to monitor amendment emplacement and behavior were performed during a biostimulation remediation effort conducted at the Department of Defense Reutilization and Marketing Office (DRMO) Yard, in Brandywine, Maryland, United States. Geochemical fluid sampling was used to calibrate a petrophysical relation in order to predict groundwater indicators of amendment distribution. The petrophysical relations were field validated by comparing predictions to sequestered fluid sample results, thus demonstrating the potential of electrical geophysics for quantitative assessment of amendment-related geochemical properties. Crosshole radar zero-offset profile and borehole geophysical logging were also performed to augment the data set and validate interpretation. In addition to delineating amendment transport in the first 10 months after emplacement, the time-lapse ERT results show later changes in bulk electrical properties interpreted as mineral precipitation. Results support the use of more cost-effective surfacebased ERT in conjunction with limited field sampling to improve spatial

  20. Sensitivity of MJO to the CAPE lapse time in the NCAR CAM3

    SciTech Connect

    LIU, P.; Wang, B.; Meehl, Gerald, A.

    2007-09-05

    Weak and irregular boreal winter MJO in the NCAR CAM3 corresponds to very low CAPE background, which is caused by easy-to-occur and over-dominant deep convection indicating the deep convective scheme uses either too low CAPE threshold as triggering function or too large consumption rate of CAPE to close the scheme. Raising the CAPE threshold from default 70 J/kg to ten times large only enhances the CAPE background while fails to noticeably improve the wind mean state and the MJO. However, lengthening the CAPE lapse time from one to eight hours significantly improved the background in CAPE and winds, and salient features of the MJO. Variances, dominant periods and zonal wave numbers, power spectra and coherent propagating structure in winds and convection associated with MJO are ameliorated and comparable to the observations. Lengthening the CAPE lapse time to eight hours reduces dramatically the cloud base mass flux, which prevents effectively the deep convection from occurring prematurely. In this case, partitioning of deep to shallow convection in MJO active area is about 5:4.5 compared to over 9:0.5 in the control run. Latent heat is significantly enhanced below 600 hPa over the central Indian Ocean and the western Pacific. Such partitioning of deep and shallow convection is argued necessary for simulating realistic MJO features. Although the universal eight hours lies in the upper limit of that required by the quasi-equilibrium theory, a local CAPE lapse time for the parameterized cumulus convection will be more realistic.

  1. Time-Lapse Electrical Geophysical Monitoring of Amendment-Based Biostimulation.

    PubMed

    Johnson, Timothy C; Versteeg, Roelof J; Day-Lewis, Frederick D; Major, William; Lane, John W

    2015-01-01

    Biostimulation is increasingly used to accelerate microbial remediation of recalcitrant groundwater contaminants. Effective application of biostimulation requires successful emplacement of amendment in the contaminant target zone. Verification of remediation performance requires postemplacement assessment and contaminant monitoring. Sampling-based approaches are expensive and provide low-density spatial and temporal information. Time-lapse electrical resistivity tomography (ERT) is an effective geophysical method for determining temporal changes in subsurface electrical conductivity. Because remedial amendments and biostimulation-related biogeochemical processes often change subsurface electrical conductivity, ERT can complement and enhance sampling-based approaches for assessing emplacement and monitoring biostimulation-based remediation. Field studies demonstrating the ability of time-lapse ERT to monitor amendment emplacement and behavior were performed during a biostimulation remediation effort conducted at the Department of Defense Reutilization and Marketing Office (DRMO) Yard, in Brandywine, Maryland, United States. Geochemical fluid sampling was used to calibrate a petrophysical relation in order to predict groundwater indicators of amendment distribution. The petrophysical relations were field validated by comparing predictions to sequestered fluid sample results, thus demonstrating the potential of electrical geophysics for quantitative assessment of amendment-related geochemical properties. Crosshole radar zero-offset profile and borehole geophysical logging were also performed to augment the data set and validate interpretation. In addition to delineating amendment transport in the first 10 months after emplacement, the time-lapse ERT results show later changes in bulk electrical properties interpreted as mineral precipitation. Results support the use of more cost-effective surface-based ERT in conjunction with limited field sampling to improve spatial

  2. Time-lapse camera studies of sea-disposed chemical munitions in Hawaii

    NASA Astrophysics Data System (ADS)

    Edwards, Margo H.; Fornari, Daniel J.; Rognstad, Mark R.; Kelley, Christopher D.; Mah, Christopher L.; Davis, Logan K.; Flores, Kyle R. M.; Main, Erin L.; Bruso, Natalie L.

    2016-06-01

    The interactions between fauna and sea-disposed munitions provide important evidence regarding whether munitions constituents affect the health of the ocean environment and its inhabitants. To date few studies of these interactions have been conducted at deep-water disposal sites; typically observations of fauna in the vicinity of sea-disposed munitions are limited to the few minutes or hours required to collect physical samples at a specific location. During the 2012 Hawaii Undersea Military Munitions Assessment (HUMMA) field program we deployed two deep-sea time-lapse camera systems with the objectives of cataloging the diversity of fauna visiting sea-disposed chemical munitions and observing faunal behavior and physiology. Over the 1- and 3-day deployments we recorded 28 different species of fishes, crustaceans, mollusks, cnidarians, and echinoderms at the two sites. Both cameras captured the previously undocumented behavior of brisingid sea stars repositioning themselves along chemical munitions casings. Despite the fact that brisingid sea stars are able to move, for the duration of both time-lapse experiments they remained on chemical munitions casings. We interpret this result to indicate that the advantages of residing on a hard substrate slightly elevated above the seafloor outweigh the effects of chemical munitions constituents for brisingid sea stars. One type of physiological anomaly observed on several arms of the brisingid sea stars at the time-lapse sites led to the collection and examination of six specimens. As reported by Mah (2015. Deep Sea Res. II, 2015, XX-XX), these physiological features are the result of parasitic crustaceans and are not caused by chemical munitions constituents.

  3. Live-streaming: Time-lapse video evidence of novel streamer formation mechanism and varying viscosity

    PubMed Central

    Parvinzadeh Gashti, Mazeyar; Bellavance, Julien; Kroukamp, Otini; Wolfaardt, Gideon; Taghavi, Seyed Mohammad; Greener, Jesse

    2015-01-01

    Time-lapse videos of growing biofilms were analyzed using a background subtraction method, which removed camouflaging effects from the heterogeneous field of view to reveal evidence of streamer formation from optically dense biofilm segments. In addition, quantitative measurements of biofilm velocity and optical density, combined with mathematical modeling, demonstrated that streamer formation occurred from mature, high-viscosity biofilms. We propose a streamer formation mechanism by sudden partial detachment, as opposed to continuous elongation as observed in other microfluidic studies. Additionally, streamer formation occurred in straight microchannels, as opposed to serpentine or pseudo-porous channels, as previously reported. PMID:26339304

  4. Time-lapse CCD imagery of plasma-tail motions in Comet Austin

    NASA Technical Reports Server (NTRS)

    Klinglesmith, Daniel A., III; Niedner, Malcolm B., Jr.; Oliversen, R. J.; Westpfahl, David J.

    1991-01-01

    The appearance of the bright comet Austin 1989c1 in April-May of 1990 allowed us to test a new imaging instrument at the Joint Observatory for Cometary Research (JOCR). It is a 300mm lens/charge coupled device (CCD) system with interference filters appropriate for cometary emissions. The 13 frames were made into a time-lapse movie showing the evolution of the plasma tail. We were able to follow at least two large-scale waves out through the main tail structure. During the sequence, we saw two new tail rays form and undergo similar wave motion.

  5. Soil Contamination, Advanced integrated characterisation and time-lapse Monitoring, SoilCAM project highlights

    NASA Astrophysics Data System (ADS)

    French, H. K.; Van Der Zee, S. E.; Wehrer, M.; Godio, A.; Pedersen, L. B.; Tsocano, G.

    2013-12-01

    The SoilCAM project (2008- 2012, EU-FP7-212663) aimed at improving methods for monitoring subsurace contaminant distribution and biodegradation. Two test sites were chosen, Oslo airport Gardermoen, Norway where de-icing agents infiltrate the soil during snowmelt and the Trecate site in Italy where an inland crude oil spill occurred in 1994. A number of geophysical investigation techniques were combined with soil and water sampling techniques. Data obtained from time-lapse measurements were further analysed by numerical modelling of flow and transport at different scales in order to characterise transport processes in the unsaturated and saturated zones. Laboratory experiments provided physical and biogeochemical data for model parameterisation and to select remediation methods. The geophysical techniques were used to map geological heterogeneities and to conduct time-lapse measurements of processes in the unsaturated zone. Both cross borehole and surface electrodes were used for electrical resistivity and induced polarisation surveys. Results showed clear indications of areas highly affected by de-icing chemicals along the runway at Oslo airport. The time lapse measurements along the runway at the airport showed infiltration patterns during snowmelt and were used to validate 2D unsaturated flow and transport simulations using SUTRA. The simulations illustrate the effect of layering geological structures and membranes, buried parallel to the runway, on the flow pattern. Complex interaction between bio-geo-chemical processes in a 1D vertical profile along the runway were described with the ORCHESTRA model. Smaller scale field site measurements revealed increase of iron and manganese during degradation of de-icing chemicals. At the Trecate site a combination of georadar, electrical resistivity and radio magneto telluric provided a broad outline of the geology down to 50 m. Anomalies in the Induced polarisation and electrical resistivity data from the cross borehole

  6. Reconstructed imaging of acoustic cloak using time-lapse reversal method

    NASA Astrophysics Data System (ADS)

    Zhou, Chen; Cheng, Ying; Xu, Jian-yi; Li, Bo; Liu, Xiao-jun

    2014-08-01

    We proposed and investigated a solution to the inverse acoustic cloak problem, an anti-stealth technology to make cloaks visible, using the time-lapse reversal (TLR) method. The TLR method reconstructs the image of an unknown acoustic cloak by utilizing scattered acoustic waves. Compared to previous anti-stealth methods, the TLR method can determine not only the existence of a cloak but also its exact geometric information like definite shape, size, and position. Here, we present the process for TLR reconstruction based on time reversal invariance. This technology may have potential applications in detecting various types of cloaks with different geometric parameters.

  7. Quantification of erosion and sedimentation using time-lapse gravimetry and Lidar in southern Taiwan

    NASA Astrophysics Data System (ADS)

    Mouyen, Maxime; Steer, Philippe; Croissant, Thomas; Le Moigne, Nicolas; Hwang, Cheinway; Cheng, Ching-Chung; Masson, Frédéric; Davy, Philippe; Lague, Dimitri; Longuevergne, Laurent

    2016-04-01

    After the 2009 Morakot typhoon, which triggered numerous large landslides in Taiwan, Mouyen et al. (2013) showed for the first time the potential of time-lapse gravity survey to infer the mass of sediments transferring by landsliding or through rivers. By providing an integrated measurement of masses, gravimetry might thus be complementary to common methods used to assess the sediments discharge of rivers. But the masses of rocks displaced by Morakot were exceptionally large as a result of the record-breaking rainfalls brought by this typhoon and one might wonder to what extent time-lapse gravimetry could record such sediment transfers. In order to better assess the capabilities of this method, we set a time-lapse gravity network dedicated to the monitoring of such sediments transfers in Paolai village (south-central Taiwan). Paolai is located near the large Laonong river where temporary alluvial deposits of sediments exist and face steep mountain slopes likely to experience landslides. Both features are considered as potential source of mass transfers, and in turn of temporal gravity changes. The first base gravity measurements were done in November 2015, using absolute and relative gravimeters, and will be repeated every year, before and after the typhoon season. In the same time, we also use a terrestrial lidar to scan the geometry of both the river and the mountain slopes, hence providing a detailed topographical survey of the studied area. Adding Lidar measurements is an efficient strategy to solve for the non-uniqueness of gravity solutions. Meanwhile, we use the Eros morphodynamic model, that combine landsliding and flooding models, to investigate various scenarios of landsliding and subsequent sediment transport and compute the gravity changes on a virtual network of gravimeters. This gives us insights on the expected order of magnitudes for these surface sediment transfers, which are useful to unravel the induced gravity signal from others sources such as

  8. Refinement of Eocene lapse rates, fossil-leaf altimetry, and North American Cordilleran surface elevation estimates

    NASA Astrophysics Data System (ADS)

    Feng, Ran; Poulsen, Christopher J.

    2016-02-01

    Estimates of continental paleoelevation using proxy methods are essential for understanding the geodynamic, climatic, and geomorphoric evolution of ancient orogens. Fossil-leaf paleoaltimetry, one of the few quantitative proxy approaches, uses fossil-leaf traits to quantify differences in temperature or moist enthalpy between coeval coastal and inland sites along latitudes. These environmental differences are converted to elevation differences using their rates of change with elevation (lapse rate). Here, we evaluate the uncertainty associated with this method using the Eocene North American Cordillera as a case study. To do so, we develop a series of paleoclimate simulations for the Early (∼55-49 Ma) and Middle Eocene (49-40 Ma) period using a range of elevation scenarios for the western North American Cordillera. Simulated Eocene lapse rates over western North America are ∼5 °C/km and 9.8 kJ/km, close to moist adiabatic rates but significantly different from modern rates. Further, using linear lapse rates underestimates high-altitude (>3 km) temperature variability and loss of moist enthalpy induced by non-linear circulation changes in response to increasing surface elevation. Ignoring these changes leads to kilometer-scale biases in elevation estimates. In addition to these biases, we demonstrate that previous elevation estimates of the western Cordillera are affected by local climate variability at coastal fossil-leaf sites of up to ∼8 °C in temperature and ∼20 kJ in moist enthalpy, a factor which further contributes to elevation overestimates of ∼1 km for Early Eocene floras located in the Laramide foreland basins and underestimates of ∼1 km for late Middle Eocene floras in the southern Cordillera. We suggest a new approach for estimating past elevations by comparing proxy reconstructions directly with simulated distributions of temperature and moist enthalpy under a range of elevation scenarios. Using this method, we estimate mean elevations for

  9. Arctic sea-ice variations from time-lapse passive microwave imagery

    USGS Publications Warehouse

    Campbell, W.J.; Ramseier, R.O.; Zwally, H.J.; Gloersen, P.

    1980-01-01

    This paper presents: (1) a short historical review of the passive microwave research on sea ice which established the observational and theoretical base permitting the interpretation of the first passive microwave images of Earth obtained by the Nimbus-5 ESMR; (2) the construction of a time-lapse motion picture film of a 16-month set of serial ESMR images to aid in the formidable data analysis task; and (3) a few of the most significant findings resulting from an early analysis of these data, using selected ESMR images to illustrate these findings. ?? 1980 D. Reidel Publishing Co.

  10. High Lapse Rates in AIRS Retrieved Temperatures in Cold Air Outbreaks

    NASA Technical Reports Server (NTRS)

    Fetzer, Eric J.; Kahn, Brian; Olsen, Edward T.; Fishbein, Evan

    2004-01-01

    The Atmospheric Infrared Sounder (AIRS) experiment, on NASA's Aqua spacecraft, uses a combination of infrared and microwave observations to retrieve cloud and surface properties, plus temperature and water vapor profiles comparable to radiosondes throughout the troposphere, for cloud cover up to 70%. The high spectral resolution of AIRS provides sensitivity to important information about the near-surface atmosphere and underlying surface. A preliminary analysis of AIRS temperature retrievals taken during January 2003 reveals extensive areas of superadiabatic lapse rates in the lowest kilometer of the atmosphere. These areas are found predominantly east of North America over the Gulf Stream, and, off East Asia over the Kuroshio Current. Accompanying the high lapse rates are low air temperatures, large sea-air temperature differences, and low relative humidities. Imagery from a Visible / Near Infrared instrument on the AIRS experiment shows accompanying clouds. These lines of evidence all point to shallow convection in the bottom layer of a cold air mass overlying warm water, with overturning driven by heat flow from ocean to atmosphere. An examination of operational radiosondes at six coastal stations in Japan shows AIRS to be oversensitive to lower tropospheric lapse rates due to systematically warm near-surface air temperatures. The bias in near-surface air temperature is seen to be independent of sea surface temperature, however. AIRS is therefore sensitive to air-sea temperature difference, but with a warm atmospheric bias. A regression fit to radiosondes is used to correct AIRS near-surface retrieved temperatures, and thereby obtain an estimate of the true atmosphere-ocean thermal contrast in five subtropical regions across the north Pacific. Moving eastward, we show a systematic shift in this air-sea temperature differences toward more isothermal conditions. These results, while preliminary, have implications for our understanding of heat flow from ocean to

  11. Long-term time-lapse microscopy of C. elegans post-embryonic development.

    PubMed

    Gritti, Nicola; Kienle, Simone; Filina, Olga; van Zon, Jeroen Sebastiaan

    2016-01-01

    We present a microscopy technique that enables long-term time-lapse microscopy at single-cell resolution in moving and feeding Caenorhabditis elegans larvae. Time-lapse microscopy of C. elegans post-embryonic development is challenging, as larvae are highly motile. Moreover, immobilization generally leads to rapid developmental arrest. Instead, we confine larval movement to microchambers that contain bacteria as food, and use fast image acquisition and image analysis to follow the dynamics of cells inside individual larvae, as they move within each microchamber. This allows us to perform fluorescence microscopy of 10-20 animals in parallel with 20 min time resolution. We demonstrate the power of our approach by analysing the dynamics of cell division, cell migration and gene expression over the full ∼48 h of development from larva to adult. Our approach now makes it possible to study the behaviour of individual cells inside the body of a feeding and growing animal. PMID:27558523

  12. Noise-free accurate count of microbial colonies by time-lapse shadow image analysis.

    PubMed

    Ogawa, Hiroyuki; Nasu, Senshi; Takeshige, Motomu; Funabashi, Hisakage; Saito, Mikako; Matsuoka, Hideaki

    2012-12-01

    Microbial colonies in food matrices could be counted accurately by a novel noise-free method based on time-lapse shadow image analysis. An agar plate containing many clusters of microbial colonies and/or meat fragments was trans-illuminated to project their 2-dimensional (2D) shadow images on a color CCD camera. The 2D shadow images of every cluster distributed within a 3-mm thick agar layer were captured in focus simultaneously by means of a multiple focusing system, and were then converted to 3-dimensional (3D) shadow images. By time-lapse analysis of the 3D shadow images, it was determined whether each cluster comprised single or multiple colonies or a meat fragment. The analytical precision was high enough to be able to distinguish a microbial colony from a meat fragment, to recognize an oval image as two colonies contacting each other, and to detect microbial colonies hidden under a food fragment. The detection of hidden colonies is its outstanding performance in comparison with other systems. The present system attained accuracy for counting fewer than 5 colonies and is therefore of practical importance.

  13. Time-Lapse Electrical Resistivity Investigations for Imaging the Grouting Injection in Shallow Subsurface Cavities

    PubMed Central

    Farooq, Muhammad; Kim, Jung Ho; Song, Young Soo; Amjad Sabir, Mohammad; Umar, Muhammad; Tariq, Mohammad; Muhammad, Said

    2014-01-01

    The highway of Yongweol-ri, Muan-gun, south-western part of the South Korean Peninsula, is underlain by the abandoned of subsurface cavities, which were discovered in 2005. These cavities lie at shallow depths with the range of 5∼15 meters below the ground surface. Numerous subsidence events have repeatedly occurred in the past few years, damaging infrastructure and highway. As a result of continuing subsidence issues, the Korean Institute of Geosciences and Mineral Resources (KIGAM) was requested by local administration to resolve the issue. The KIGAM used geophysical methods to delineate subsurface cavities and improve more refined understanding of the cavities network in the study area. Cement based grouting has been widely employed in the construction industry to reinforce subsurface ground. In this research work, time-lapse electrical resistivity surveys were accomplished to monitor the grouting injection in the subsurface cavities beneath the highway, which have provided a quasi-real-time monitoring for modifying the subsurface cavities related to ground reinforcement, which would be difficult with direct methods. The results obtained from time-lapse electrical resistivity technique have satisfactory imaged the grouting injection experiment in the subsurface cavities beneath the highway. Furthermore, the borehole camera confirmed the presence of grouting material in the subsurface cavities, and hence this procedure increases the mechanical resistance of subsurface cavities below the highway. PMID:24578621

  14. Numerical studies of imaging subsurface waterfloods using CSERT with time-lapse inversion

    NASA Astrophysics Data System (ADS)

    Zhang, Ying-Ying; Liu, De-Jun; Wang, Li-Yang; Ai, Qing-Hui; Qin, Min-Jun

    2015-12-01

    During the operation of the waterflooding technique, it is necessary to identify the waterflooding areas to enhance oil displacement efficiency. A casing-surface electrical resistivity tomography (CSERT) system using a well casing as a long electrode is able to detect a wide lateral scope, but its vertical resolution and ability to identify deep anomalies in the reservoir are limited, particularly for reservoirs with high-conductivity anomalies in the shallow subsurface, which disturb the response from the water floods at depth. In this study, we first simplified this kind of reservoir into a dual layered anomaly model. Then the log-inject-log method with time-lapse inversion was proposed and evaluated regarding its ability to improve the imaging of the deep waterflooding areas and the shallow anomaly. The results were compared with the commonly used static measurement with static inversion. In the static inversion results, the shallow anomaly was imaged well but the deep anomaly was unobservable. The results of the proposed log-inject-log method with time-lapse inversion showed that it is able to identify the shallow and deep anomalies better under various conditions, thus validating its ability to improve the vertical resolution of the CSERT system.

  15. Tracking tracer breakthrough in the hyporheic zone using time‐lapse DC resistivity, Crabby Creek, Pennsylvania

    USGS Publications Warehouse

    Nyquist, Jonathan E.; Toran, Laura; Fang, Allison C.; Ryan, Robert J.; Rosenberry, Donald O.

    2010-01-01

    Characterization of the hyporheic zone is of critical importance for understanding stream ecology, contaminant transport, and groundwater‐surface water interaction. A salt water tracer test was used to probe the hyporheic zone of a recently re‐engineered portion of Crabby Creek, a stream located near Philadelphia, PA. The tracer solution was tracked through a 13.5 meter segment of the stream using both a network of 25 wells sampled every 5–15 minutes and time‐lapse electrical resistivity tomographs collected every 11 minutes for six hours, with additional tomographs collected every 100 minutes for an additional 16 hours. The comparison of tracer monitoring methods is of keen interest because tracer tests are one of the few techniques available for characterizing this dynamic zone, and logistically it is far easier to collect resistivity tomographs than to install and monitor a dense network of wells. Our results show that resistivity monitoring captured the essential shape of the breakthrough curve and may indicate portions of the stream where the tracer lingered in the hyporheic zone. Time‐lapse resistivity measurements, however, represent time averages over the period required to collect a tomographic data set, and spatial averages over a volume larger than captured by a well sample. Smoothing by the resistivity data inversion algorithm further blurs the resulting tomograph; consequently resistivity monitoring underestimates the degree of fine‐scale heterogeneity in the hyporheic zone.

  16. Tracking CO2 Plume in Deep Saline Formations Utilizing a Time-lapse Pressure Tomography Approach

    NASA Astrophysics Data System (ADS)

    Hu, L.; Bayer, P.; Brauchler, R.

    2015-12-01

    CO2 storage in deep saline formations is considered as an attractive option to cut down greenhouse gas emissions. Among the major challenges is the development of efficient technologies for controlling and monitoring the evolution of CO2 plumes during and after injection in the underground. As an alternative to the most commonly used geophysical approaches for subsurface characterization, we propose a pressure-based tomographical approach to track CO2 plume history. By taking into account the direct relationship between saturation and flow properties, pressure tomography has the potential not only to detect a plume but also to estimate the saturation of CO2. The experimental set-up of pressure tomography involves injection of brine or CO2 at variable depths (sources). We use a time-lapse approach, considering first the CO2-free formation, and then the multi-phase CO2-brine system. By applying a rapid eikonal-based inversion technique, pressure fluctuations at observation locations (receivers) are utilized to reconstruct the spatial distribution of the apparent single-phase and mixed-phase diffusivity. Evolution of the plume shape is then delineated by comparison of diffusivity tomograms derived from different times. Finally, an integrated value of CO2 saturation within the plume is obtained by means of a single-phase proxy. Applicability of this novel approach is evaluated in different virtual formations. The time-lapse pressure tomographic investigation revealed that knowledge about the spatial heterogeneity of permeability has a remarkable impact on proper characterization of plume shape.

  17. Long-term time-lapse multimodal microscopy for tracking cell dynamics in live tissue

    NASA Astrophysics Data System (ADS)

    Graf, Benedikt W.; Valero, Maria C.; Chaney, Eric J.; Marjanovic, Marina; Boppart, Marni D.; Boppart, Stephen A.

    2011-02-01

    High speed intravital microscopy has emerged as an essential tool for studying cellular dynamics in live tissue. A limitation of this technique, however, is that the timescale that a sample can be continuously imaged is limited by practical considerations to several hours. Long term observation of live tissue is of great interest for a variety of research areas. We present methods for observing long term cellular dynamics in live tissue based on three-dimensional registration of time-lapse intravital microscopy images. For these experiments we utilized a custom multimodal microscope that allows simultaneous and co-registered acquisition of optical coherence (OCM) and multiphoton (MPM) microscopy images. OCM allows the structure of a sample to be visualized based on backscattered light while MPM excited fluorescence allows individual cells and cell function to be visualized. The OCM images of tissue structure are used to register data sets taken at different time points. The transformations of the OCM images are applied to MPM images to determine the migration of cell populations. This method of image registration is applied to in vivo tracking of bone-marrow derived GFP-labeled stem cells in mouse skin following bone marrow transplants from GFP donors into species-matched wildtype hosts. The use of three-dimensional image registration of time-lapse microscopy images enables tracking these cells after local cutaneous injury, and for investigating the role of skin stem cells in wound healing.

  18. Coda-wave interferometry analysis of time-lapse VSP data for monitoring geological carbon sequestration

    SciTech Connect

    Zhou, R.; Huang, L.; Rutledge, J.T.; Fehler, M.; Daley, T.M.; Majer, E.L.

    2009-11-01

    Injection and movement/saturation of carbon dioxide (CO2) in a geological formation will cause changes in seismic velocities. We investigate the capability of coda-wave interferometry technique for estimating CO2-induced seismic velocity changes using time-lapse synthetic vertical seismic profiling (VSP) data and the field VSP datasets acquired for monitoring injected CO2 in a brine aquifer in Texas, USA. Synthetic VSP data are calculated using a finite-difference elastic-wave equation scheme and a layered model based on the elastic Marmousi model. A possible leakage scenario is simulated by introducing seismic velocity changes in a layer above the CO2 injection layer. We find that the leakage can be detected by the detection of a difference in seismograms recorded after the injection compared to those recorded before the injection at an earlier time in the seismogram than would be expected if there was no leakage. The absolute values of estimated mean velocity changes, from both synthetic and field VSP data, increase significantly for receiver positions approaching the top of a CO2 reservoir. Our results from field data suggest that the velocity changes caused by CO2 injection could be more than 10% and are consistent with results from a crosswell tomogram study. This study demonstrates that time-lapse VSP with coda-wave interferometry analysis can reliably and effectively monitor geological carbon sequestration.

  19. Toward non-hair-bearing brain-computer interfaces for neurocognitive lapse detection.

    PubMed

    Wei, Chun-Shu; Wang, Yu-Te; Lin, Chin-Teng; Jung, Tzyy-Ping

    2015-01-01

    Recent advances in mobile electroencephalogram (EEG) acquisition based on dry electrodes have started moving Brain-Computer Interface (BCI) applications from well-controlled laboratory settings to real-world environments. However, the application mechanisms and high impedance of dry electrodes over the hair-covered areas remain challenging for everyday use of BCI. In addition, whole-scalp recordings are not always necessary or applicable due to various practical constrains. Therefore, alternative montages for EEG recordings to meet the everyday needs are in-demand. Inspired by our previous work on measuring non-hair-bearing steady state visual evoked potentials for BCI applications, this study explores the feasibility and efficacy of detecting cognitive lapses of participants based on EEG signals collected from the non-hair-bearing areas. Study results suggest that informative EEG features associated with lapses could be assessed from non-hair-bearing areas with comparable accuracy obtained from the whole-scalp EEG. The design principles, validation processes and promising findings reported in this study may enable and/or facilitate numerous BCI applications in real-world environments.

  20. Time-Lapse Evaluation of Interactions Between Biodegradable Mg Particles and Cells.

    PubMed

    Alvarez, Florencia; Lozano Puerto, Rosa M; Pérez-Maceda, Blanca; Grillo, Claudia A; Fernández Lorenzo de Mele, Mónica

    2016-02-01

    Mg-based implants have promising applications as biodegradable materials in medicine for orthopedic, dental, and cardiovascular therapies. During wear and degradation microdebris are released. Time-lapse multidimensional microscopy (MM) is proposed here as a suitable tool to follow, in fixed intervals over 24-h periods, the interaction between cells and particles. Results of MM show interactions of macrophages (J774) with the magnesium particles (MgPa) that led to modifications of cell size and morphology, a decrease in duplication rate, and cell damage. Corrosion products were progressively formed on the surface of the particles and turbulence was generated due to hydrogen development. Changes were more significant after treating MgPa with potassium fluoride. In order to complement MM observations, membrane damage as detected by a lactase dehydrogenase (LDH) assay and mitochondrial activity as detected by a WST-1 assay with macrophages and osteoblasts (MC3T3-E1) were compared. A more significant concentration-dependent effect was detected for macrophages exposed to MgPa than for osteoblasts. Accordingly, complementary data showed that viability and cell cycle seem to be more altered in macrophages. In addition, protein profiles and expression of proteins associated with the adhesion process changed in the presence of MgPa. These studies revealed that time-lapse MM is a helpful tool for monitoring changes of biodegradable materials and the biological surrounding in real time and in situ. This information is useful in studies related to biodegradable biomaterials. PMID:26810154

  1. Time-lapse imaging of disease progression in deep brain areas using fluorescence microendoscopy

    PubMed Central

    Barretto, Robert P. J.; Ko, Tony H.; Jung, Juergen C.; Wang, Tammy J.; Capps, George; Waters, Allison C.; Ziv, Yaniv; Attardo, Alessio; Recht, Lawrence; Schnitzer, Mark J.

    2013-01-01

    The combination of intravital microscopy and animal models of disease has propelled studies of disease mechanisms and treatments. However, many disorders afflict tissues inaccessible to light microscopy in live subjects. Here we introduce cellular-level time-lapse imaging deep within the live mammalian brain by one- and two-photon fluorescence microendoscopy over multiple weeks. Bilateral imaging sites allowed longitudinal comparisons within individual subjects, including of normal and diseased tissues. Using this approach we tracked CA1 hippocampal pyramidal neuron dendrites in adult mice, revealing these dendrites' extreme stability (>8,000 day mean lifetime) and rare examples of their structural alterations. To illustrate disease studies, we tracked deep lying gliomas by observing tumor growth, visualizing three-dimensional vasculature structure, and determining microcirculatory speeds. Average erythrocyte speeds in gliomas declined markedly as the disease advanced, notwithstanding significant increases in capillary diameters. Time-lapse microendoscopy will be applicable to studies of numerous disorders, including neurovascular, neurological, cancerous, and trauma-induced conditions. PMID:21240263

  2. A cautionary note against embryo aneuploidy risk assessment using time-lapse imaging.

    PubMed

    Ottolini, Christian; Rienzi, Laura; Capalbo, Antonio

    2014-03-01

    Preimplantation genetic screening (PGS) for embryo aneuploidy using embryo biopsy is a widely available technique used to select embryos for transfer following IVF for certain patient populations. Since its introduction, there has been an ongoing search for a non-invasive technique to perform PGS. Such an advance would revolutionize the field of IVF enabling PGS to be used universally as a routine embryo selection tool with the potential to significantly increase pregnancy rates and decrease poor outcomes such as miscarriage. Recent publications illustrating the development of an algorithm using time-lapse imaging of IVF embryos have claimed to have done just this. We believe that the statements made in these articles, which include the proposed ability to increase pregnancy rates by determining embryo aneuploidy risk by time-lapse imaging, are premature and to this point unsubstantiated by the published data. We provide evidence from existing publications and from our own data that suggests that the statements recently made are misleading. We make the point that further investigation is needed either in the form of a larger, age-adjusted data set or preferably in a randomized controlled trial. PMID:24433755

  3. Temperature lapse rates at restricted thermodynamic equilibrium in the Earth system

    NASA Astrophysics Data System (ADS)

    Björnbom, Pehr

    2015-03-01

    Equilibrium temperature profiles obtained by maximizing the entropy of a column of fluid with a given height and volume under the influence of gravity are discussed by using numerical experiments. Calculations are made both for the case of an ideal gas and for a liquid with constant isobaric heat capacity, constant compressibility and constant thermal expansion coefficient representing idealized conditions corresponding to atmosphere and ocean. Calculations confirm the classical equilibrium condition by Gibbs that an isothermal temperature profile gives a maximum in entropy constrained by a constant mass and a constant sum of internal and potential energy. However, it was also found that an isentropic profile gives a maximum in entropy constrained by a constant mass and a constant internal energy of the fluid column. On the basis of this result a hypothesis is suggested that the adiabatic lapse rate represents a restricted or transitory and metastable equilibrium state, which has a maximum in entropy with lower value than the maximum in the state with an isothermal lapse rate. This transitory equilibrium state is maintained by passive forces, preventing or slowing down the transition of the system to the final or ultimate equilibrium state.

  4. Time-lapse nanoscopy of friction in the non-Amontons and non-Coulomb regime.

    PubMed

    Ishida, Tadashi; Sato, Takaaki; Ishikawa, Takahiro; Oguma, Masatsugu; Itamura, Noriaki; Goda, Keisuke; Sasaki, Naruo; Fujita, Hiroyuki

    2015-03-11

    Originally discovered by Leonard da Vinci in the 15th century, the force of friction is directly proportional to the applied load (known as Amontons' first law of friction). Furthermore, kinetic friction is independent of the sliding speed (known as Coulomb's law of friction). These empirical laws break down at high normal pressure (due to plastic deformation) and low sliding speed (in the transition regime between static friction and kinetic friction). An important example of this phenomenon is friction between the asperities of tectonic plates on the Earth. Despite its significance, little is known about the detailed mechanism of friction in this regime due to the lack of experimental methods. Here we demonstrate in situ time-lapse nanoscopy of friction between asperities sliding at ultralow speed (∼0.01 nm/s) under high normal pressure (∼GPa). This is made possible by compressing and rubbing a pair of nanometer-scale crystalline silicon anvils with electrostatic microactuators and monitoring its dynamical evolution with a transmission electron microscope. Our analysis of the time-lapse movie indicates that superplastic behavior is induced by decrystallization, plastic deformation, and atomic diffusion at the asperity-asperity interface. The results hold great promise for a better understanding of quasi-static friction under high pressure for geoscience, materials science, and nanotechnology.

  5. Time-lapse nanoscopy of friction in the non-Amontons and non-Coulomb regime.

    PubMed

    Ishida, Tadashi; Sato, Takaaki; Ishikawa, Takahiro; Oguma, Masatsugu; Itamura, Noriaki; Goda, Keisuke; Sasaki, Naruo; Fujita, Hiroyuki

    2015-03-11

    Originally discovered by Leonard da Vinci in the 15th century, the force of friction is directly proportional to the applied load (known as Amontons' first law of friction). Furthermore, kinetic friction is independent of the sliding speed (known as Coulomb's law of friction). These empirical laws break down at high normal pressure (due to plastic deformation) and low sliding speed (in the transition regime between static friction and kinetic friction). An important example of this phenomenon is friction between the asperities of tectonic plates on the Earth. Despite its significance, little is known about the detailed mechanism of friction in this regime due to the lack of experimental methods. Here we demonstrate in situ time-lapse nanoscopy of friction between asperities sliding at ultralow speed (∼0.01 nm/s) under high normal pressure (∼GPa). This is made possible by compressing and rubbing a pair of nanometer-scale crystalline silicon anvils with electrostatic microactuators and monitoring its dynamical evolution with a transmission electron microscope. Our analysis of the time-lapse movie indicates that superplastic behavior is induced by decrystallization, plastic deformation, and atomic diffusion at the asperity-asperity interface. The results hold great promise for a better understanding of quasi-static friction under high pressure for geoscience, materials science, and nanotechnology. PMID:25330166

  6. Using a time lapse microgravity model for mapping seawater intrusion around Semarang

    NASA Astrophysics Data System (ADS)

    Supriyadi, Khumaedi, Yusuf, M.; Agung, W.

    2016-03-01

    A modeling of time-lapse microgravity anomaly due to sea water intrusion has been conducted. It used field data of aquifer cross section, aquifer thickness and lithology of research area. Those data were then processed using Grav3D and Surfer. Modeling results indicated that the intrusion of sea water resulting in a time-lapse microgravity anomalies of 0.12 to 0.18 mGal, at soil layer density of 0.15 g/cm3 to 0.3 g/cm3 and at depth of 30 to 100 m. These imply that the areas experiencing seawater intrusion were Tanjung Mas, SPBE Bandarharjo, Brass, Old Market Boom and Johar as the microgravity measured there were in the range of 0.12 to 0.18 mGal and the density contrast were at 0.15 g/cm3 to 0.28 g/cm3. Areas that experienced fluid reduction were Puri Anjasmoro, Kenconowungu and Puspowarno with microgravity changes from -0.06 mGal to -0.18 mGal.

  7. Very-high-resolution time-lapse photography for plant and ecosystems research1

    PubMed Central

    Nichols, Mary H.; Steven, Janet C.; Sargent, Randy; Dille, Paul; Schapiro, Joshua

    2013-01-01

    • Premise of the study: Traditional photography is a compromise between image detail and area covered. We report a new method for creating time-lapse sequences of very-high-resolution photographs to produce zoomable images that facilitate observation across a range of spatial and temporal scales. • Methods and Results: A robotic camera mount and software were used to capture images of the growth and movement in Brassica rapa every 15 s in the laboratory. The resultant time-lapse sequence (http://timemachine.gigapan.org/wiki/Plant_Growth) captures growth detail such as circumnutation. A modified, solar-powered system was deployed at a remote field site in southern Arizona. Images were collected every 2 h over a 3-mo period to capture the response of vegetation to monsoon season rainfall (http://timemachine.gigapan.org/wiki/Arizona_Grasslands). • Conclusions: A technique for observing time sequences of both individual plant and ecosystem response at a range of spatial scales is available for use in the laboratory and in the field. PMID:25202588

  8. Time lapse seismic observations and effects of reservoir compressibility at Teal South oil field

    NASA Astrophysics Data System (ADS)

    Islam, Nayyer

    One of the original ocean-bottom time-lapse seismic studies was performed at the Teal South oil field in the Gulf of Mexico during the late 1990's. This work reexamines some aspects of previous work using modern analysis techniques to provide improved quantitative interpretations. Using three-dimensional volume visualization of legacy data and the two phases of post-production time-lapse data, I provide additional insight into the fluid migration pathways and the pressure communication between different reservoirs, separated by faults. This work supports a conclusion from previous studies that production from one reservoir caused regional pressure decline that in turn resulted in liberation of gas from multiple surrounding unproduced reservoirs. I also provide an explanation for unusual time-lapse changes in amplitude-versus-offset (AVO) data related to the compaction of the producing reservoir which, in turn, changed an isotropic medium to an anisotropic medium. In the first part of this work, I examine regional changes in seismic response due to the production of oil and gas from one reservoir. The previous studies primarily used two post-production ocean-bottom surveys (Phase I and Phase II), and not the legacy streamer data, due to the unavailability of legacy prestack data and very different acquisition parameters. In order to incorporate the legacy data in the present study, all three post-stack data sets were cross-equalized and examined using instantaneous amplitude and energy volumes. This approach appears quite effective and helps to suppress changes unrelated to production while emphasizing those large-amplitude changes that are related to production in this noisy (by current standards) suite of data. I examine the multiple data sets first by using the instantaneous amplitude and energy attributes, and then also examine specific apparent time-lapse changes through direct comparisons of seismic traces. In so doing, I identify time-delays that, when

  9. The Extreme Ice Survey: Capturing and Conveying Glacial Processes Through Time-Lapse Imagery and Narration

    NASA Astrophysics Data System (ADS)

    Balog, J. D.; Box, J. E.; Pfeffer, W. T.; Hood, E. W.; Fagre, D. B.; Anker, C.; O'Neel, S.

    2010-12-01

    The Extreme Ice Survey (EIS) uses time-lapse photography, conventional photography, and video to document rapid change in the Earth's glacial ice. The EIS team currently has 38 time-lapse cameras at sites in Greenland, Iceland, Alaska, the Rocky Mountains and Nepal. EIS supplements this ongoing record with annual repeat photography in British Columbia, Iceland, the Alps, and Bolivia. EIS imagery supplies basic knowledge in glacier dynamics to the science community, as well as compelling, engaging narratives to the general public about the immediacy of the Anthropocene and climate change. Visual materials from EIS have impacted more than 150 million people, ranging from White House staff, the U. S. Congress and government agency officials to globally influential corporate officers and all age strata of the general public. Media products include a National Geographic/NOVA special, two National Geographic magazine articles, a feature in Parade magazine (circulation 71 million), and numerous presentations on CNN, NBC, BBC and National Public Radio. Columbia Glacier, Alaska, June 2006, May 2007, June 2008 terminus indicated.

  10. Time-lapse seismic waveform modelling and attribute analysis using hydromechanical models for a deep reservoir undergoing depletion

    NASA Astrophysics Data System (ADS)

    He, Y.-X.; Angus, D. A.; Blanchard, T. D.; Wang, G.-L.; Yuan, S.-Y.; Garcia, A.

    2016-04-01

    Extraction of fluids from subsurface reservoirs induces changes in pore pressure, leading not only to geomechanical changes, but also perturbations in seismic velocities and hence observable seismic attributes. Time-lapse seismic analysis can be used to estimate changes in subsurface hydromechanical properties and thus act as a monitoring tool for geological reservoirs. The ability to observe and quantify changes in fluid, stress and strain using seismic techniques has important implications for monitoring risk not only for petroleum applications but also for geological storage of CO2 and nuclear waste scenarios. In this paper, we integrate hydromechanical simulation results with rock physics models and full-waveform seismic modelling to assess time-lapse seismic attribute resolution for dynamic reservoir characterization and hydromechanical model calibration. The time-lapse seismic simulations use a dynamic elastic reservoir model based on a North Sea deep reservoir undergoing large pressure changes. The time-lapse seismic traveltime shifts and time strains calculated from the modelled and processed synthetic data sets (i.e. pre-stack and post-stack data) are in a reasonable agreement with the true earth models, indicating the feasibility of using 1-D strain rock physics transform and time-lapse seismic processing methodology. Estimated vertical traveltime shifts for the overburden and the majority of the reservoir are within ±1 ms of the true earth model values, indicating that the time-lapse technique is sufficiently accurate for predicting overburden velocity changes and hence geomechanical effects. Characterization of deeper structure below the overburden becomes less accurate, where more advanced time-lapse seismic processing and migration is needed to handle the complex geometry and strong lateral induced velocity changes. Nevertheless, both migrated full-offset pre-stack and near-offset post-stack data image the general features of both the overburden and

  11. Selected time-lapse movies of the east rift zone eruption of KĪlauea Volcano, 2004–2008

    USGS Publications Warehouse

    Orr, Tim R.

    2011-01-01

    Since 2004, the U.S. Geological Survey's Hawaiian Volcano Observatory has used mass-market digital time-lapse cameras and network-enabled Webcams for visual monitoring and research. The 26 time-lapse movies in this report were selected from the vast collection of images acquired by these camera systems during 2004–2008. Chosen for their content and broad aesthetic appeal, these image sequences document a variety of flow-field and vent processes from Kīlauea's east rift zone eruption, which began in 1983 and is still (as of 2011) ongoing.

  12. Active and passive electrical and seismic time-lapse monitoring of earthen embankments

    NASA Astrophysics Data System (ADS)

    Rittgers, Justin Bradley

    In this dissertation, I present research involving the application of active and passive geophysical data collection, data assimilation, and inverse modeling for the purpose of earthen embankment infrastructure assessment. Throughout the dissertation, I identify several data characteristics, and several challenges intrinsic to characterization and imaging of earthen embankments and anomalous seepage phenomena, from both a static and time-lapse geophysical monitoring perspective. I begin with the presentation of a field study conducted on a seeping earthen dam, involving static and independent inversions of active tomography data sets, and self-potential modeling of fluid flow within a confined aquifer. Additionally, I present results of active and passive time-lapse geophysical monitoring conducted during two meso-scale laboratory experiments involving the failure and self-healing of embankment filter materials via induced vertical cracking. Identified data signatures and trends, as well as 4D inversion results, are discussed as an underlying motivation for conducting subsequent research. Next, I present a new 4D acoustic emissions source localization algorithm that is applied to passive seismic monitoring data collected during a full-scale embankment failure test. Acoustic emissions localization results are then used to help spatially constrain 4D inversion of collocated self-potential monitoring data. I then turn to time-lapse joint inversion of active tomographic data sets applied to the characterization and monitoring of earthen embankments. Here, I develop a new technique for applying spatiotemporally varying structural joint inversion constraints. The new technique, referred to as Automatic Joint Constraints (AJC), is first demonstrated on a synthetic 2D joint model space, and is then applied to real geophysical monitoring data sets collected during a full-scale earthen embankment piping-failure test. Finally, I discuss some non-technical issues related to

  13. Time-lapse VSP data processing for monitoring CO2 injection

    SciTech Connect

    Huang, Lianjie; Rutledge, James; Cheng, Arthur

    2009-01-01

    As a part of the effort of the Southwest Regional Partnership on Carbon Sequestration supported by U.S. Department of Energy and managed by the National Energy Technology Laboratory, two sets of time-lapse VSPs were acquired and processed in oil fields undergoing CO{sub 2} injection. One set of VSPs was acquired at the Aneth oil field in Utah, the other set at the Scurry Area Canyon Reef Operators Committee (SACROC) field in West Texas. One baseline and two repeat VSP surveys were conducted from 2007 to 2009 at the Aneth oil field in Utah for monitoring CO{sub 2} injection. The aim of the time-lapse VSP surveys is to study the combined enhanced oil recovery (EOR) and CO{sub 2} sequestration in collaboration with Resolute Natural Resources, Inc. VSP data were acquired using a cemented geophone string with 60 levels at depth from 805 m to 1704 m, and CO{sub 2} is injected into a horizontal well nearby within the reservoir at depth approximately from 1730 m to 1780 m. For each VSP survey, the data were acquired for one zero-offset source location and seven offset source locations (Figure 1). The baseline VSP survey was conducted before the CO{sub 2} injection. More than ten thousand tons of CO{sub 2} was injected between each of the two repeat VSP surveys. There are three horizontal injection wells, all originating from the same vertical well. One is drilled towards Southeast, directly towards the monitoring well (Figure 2), and the other two towards Northwest, directly away from the monitoring well. The injection is into the top portion of the Desert Creek formation, just beneath the Gothic shale, which acts as the reservoir seal. The initial baseline acquisition was done in October 2007; subsequent time-lapse acquisitions were conducted in July 2008, and January 2009. The acquisition geometry is shown in Figure 1. Shot point 1 is the zero-offset source location, Shot points 2 to 8 are the seven offset VSPs, arranged in a quarter circle on the Northwest side of the

  14. Minds “At Attention”: Mindfulness Training Curbs Attentional Lapses in Military Cohorts

    PubMed Central

    Jha, Amishi P.; Morrison, Alexandra B.; Dainer-Best, Justin; Parker, Suzanne; Rostrup, Nina; Stanley, Elizabeth A.

    2015-01-01

    We investigated the impact of mindfulness training (MT) on attentional performance lapses associated with task-unrelated thought (i.e., mind wandering). Periods of persistent and intensive demands may compromise attention and increase off-task thinking. Here, we investigated if MT may mitigate these deleterious effects and promote cognitive resilience in military cohorts enduring a high-demand interval of predeployment training. To better understand which aspects of MT programs are most beneficial, three military cohorts were examined. Two of the three groups were provided MT. One group received an 8-hour, 8-week variant of Mindfulness-based Mind Fitness Training (MMFT) emphasizing engagement in training exercises (training-focused MT, n = 40), a second group received a didactic-focused variant emphasizing content regarding stress and resilience (didactic-focused MT, n = 40), and the third group served as a no-training control (NTC, n = 24). Sustained Attention to Response Task (SART) performance was indexed in all military groups and a no-training civilian group (CIV, n = 45) before (T1) and after (T2) the MT course period. Attentional performance (measured by A’, a sensitivity index) was lower in NTC vs. CIV at T2, suggesting that performance suffers after enduring a high-demand predeployment interval relative to a similar time period of civilian life. Yet, there were significantly fewer performance lapses in the military cohorts receiving MT relative to NTC, with training-focused MT outperforming didactic-focused MT at T2. From T1 to T2, A’ degraded in NTC and didactic-focused MT but remained stable in training-focused MT and CIV. In sum, while protracted periods of high-demand military training may increase attentional performance lapses, practice-focused MT programs akin to training-focused MT may bolster attentional performance more than didactic-focused programs. As such, training-focused MT programs should be further examined in cohorts experiencing

  15. Electron microscopic time-lapse visualization of surface pore filtration on particulate matter trapping process.

    PubMed

    Sanui, Ryoko; Hanamura, Katsunori

    2016-09-01

    A scanning electron microscope (SEM) was used to dynamically visualize the particulate matter (PM) trapping process on diesel particulate filter (DPF) walls at a micro scale as 'time-lapse' images corresponding to the increase in pressure drop simultaneously measured through the DPF. This visualization and pressure drop measurement led to the conclusion that the PM trapping in surface pores was driven by PM bridging and stacking at constricted areas in porous channels. This caused a drastic increase in the pressure drop during PM accumulation at the beginning of the PM trapping process. The relationship between the porous structure of the DPF and the depth of the surface pore was investigated in terms of the porosity distribution and PM penetration depth near the wall surface with respect to depth. The pressure drop calculated with an assumed surface pore depth showed a good correspondence to the measured pressure drop.

  16. Imaging Pluripotency: Time-Lapse Analysis of Mouse Embryonic Stem Cells.

    PubMed

    Pezzarossa, Anna; Guedes, Ana M V; Henrique, Domingos; Abranches, Elsa

    2016-01-01

    The current view of the pluripotent state is that of a transient, dynamic state, maintained by the balance between opposing cues. Understanding how this dynamic state is established in pluripotent cells and how it relates to gene expression is essential to obtain a more detailed description of the pluripotent state.In this chapter, we describe how to study the dynamic expression of a core pluripotency gene regulator-Nanog-by exploiting single-cell time-lapse imaging of a reporter mESC line grown in different cell culture media. We further describe an automated image analysis method and discuss how to extract information from the generated quantitative time-course data.

  17. Time-lapse cinematography of the capillary tube cell migration inhibition test.

    PubMed

    Bray, M A

    1980-01-01

    The kinetics of human and guinea pig cell migration inhibition have been studied using time-lapse cinematography of cells migrating from capillary tubes. Guinea pig and human cells exhibit markedly different kinetics in the absence of inhibitors. Specific antigen causes a dose-related inhibition of migration for up to 60 h using guinea pig cells and a peak of inhibition after 18 h using the human leucocyte system. The timing of measurement of maximum activity more critical for the latter test. The kinetics of lymphokine generation have been examined and the migration inhibitory activity of the plant mitogen (PHA), a Kurloff cell product and a continuous cell line supernatant have been compared with the inhibitory profiles of lymphokine preparations and specific antigen. PMID:7350125

  18. Time-lapse cinematography of the capillary tube cell migration inhibition test.

    PubMed

    Bray, M A

    1980-01-01

    The kinetics of human and guinea pig cell migration inhibition have been studied using time-lapse cinematography of cells migrating from capillary tubes. Guinea pig and human cells exhibit markedly different kinetics in the absence of inhibitors. Specific antigen causes a dose-related inhibition of migration for up to 60 h using guinea pig cells and a peak of inhibition after 18 h using the human leucocyte system. The timing of measurement of maximum activity more critical for the latter test. The kinetics of lymphokine generation have been examined and the migration inhibitory activity of the plant mitogen (PHA), a Kurloff cell product and a continuous cell line supernatant have been compared with the inhibitory profiles of lymphokine preparations and specific antigen.

  19. Time-lapse microscopy and image processing for stem cell research: modeling cell migration

    NASA Astrophysics Data System (ADS)

    Gustavsson, Tomas; Althoff, Karin; Degerman, Johan; Olsson, Torsten; Thoreson, Ann-Catrin; Thorlin, Thorleif; Eriksson, Peter

    2003-05-01

    This paper presents hardware and software procedures for automated cell tracking and migration modeling. A time-lapse microscopy system equipped with a computer controllable motorized stage was developed. The performance of this stage was improved by incorporating software algorithms for stage motion displacement compensation and auto focus. The microscope is suitable for in-vitro stem cell studies and allows for multiple cell culture image sequence acquisition. This enables comparative studies concerning rate of cell splits, average cell motion velocity, cell motion as a function of cell sample density and many more. Several cell segmentation procedures are described as well as a cell tracking algorithm. Statistical methods for describing cell migration patterns are presented. In particular, the Hidden Markov Model (HMM) was investigated. Results indicate that if the cell motion can be described as a non-stationary stochastic process, then the HMM can adequately model aspects of its dynamic behavior.

  20. In vivo time-lapse imaging of mitochondria in healthy and diseased peripheral myelin sheath.

    PubMed

    Gonzalez, Sergio; Fernando, Ruani; Berthelot, Jade; Perrin-Tricaud, Claire; Sarzi, Emmanuelle; Chrast, Roman; Lenaers, Guy; Tricaud, Nicolas

    2015-07-01

    The myelin sheath that covers a large amount of neurons is critical for their homeostasis, and myelinating glia mitochondria have recently been shown to be essential for neuron survival. However morphological and physiological properties of these organelles remain elusive. Here we report a method to analyze mitochondrial dynamics and morphology in myelinating Schwann cells of living mice using viral transduction and time-lapse multiphoton microscopy. We describe the distribution, shape, size and dynamics of mitochondria in live cells. We also report mitochondrial alterations in Opa1(delTTAG) mutant mice cells at presymptomatic stages, suggesting that mitochondrial defects in myelin contribute to OPA1 related neuropathy and represent a biomarker for the disease.

  1. Time-lapse cinematographic analysis of beryllium--lung fibroblast interactions.

    PubMed

    Absher, M; Sylwester, D; Hart, B A

    1983-02-01

    The proliferative response to beryllium chloride of cells in a population of human lung fibroblasts was quantitatively assessed using time-lapse cinematography. A dose of 0.02 microgram Be/ml, known to decrease the growth rate of fibroblasts, affects an estimated 75% of the cells in the population, increasing their interdivision time (IDT) by approximately 5 hr. The differences in mean 1n(IDT) between treated and control cells were essentially constant for comparable culture sizes ranging from 25 to 250 cells. There was no correlation between mother and daughter cell IDTs in control or treated culture at any culture size. IDTs of sister pairs were highly correlated in control cultures at selected culture sizes while sister pair IDTs of treated cultures were not. The data suggest that while beryllium alters the IDT of fibroblasts, an effect not related to culture size, any given cell affected by beryllium does not impart effects of the mineral to its progeny.

  2. A poly(dimethylsiloxane)-based device enabling time-lapse imaging with high spatial resolution

    SciTech Connect

    Hirano, Masahiko; Hoshida, Tetsushi; Sakaue-Sawano, Asako; Miyawaki, Atsushi

    2010-02-12

    We have developed a regulator-free device that enables long-term incubation of mammalian cells for epi-fluorescence imaging, based on a concept that the size of sample to be gassed and heated is reduced to observation scale. A poly(dimethylsiloxane) block stamped on a coverslip works as a long-lasting supplier of CO{sub 2}-rich gas to adjust bicarbonate-containing medium in a tiny chamber at physiological pH, and an oil-immersion objective warms cells across the coverslip. A time-lapse imaging experiment using HeLa cells stably expressing fluorescent cell-cycle indicators showed that the cells in the chamber proliferated with normal cell-cycle period over 2 days.

  3. TRIIG - Time-lapse reproduction of images through interactive graphics. [digital processing of quality hard copy

    NASA Technical Reports Server (NTRS)

    Buckner, J. D.; Council, H. W.; Edwards, T. R.

    1974-01-01

    Description of the hardware and software implementing the system of time-lapse reproduction of images through interactive graphics (TRIIG). The system produces a quality hard copy of processed images in a fast and inexpensive manner. This capability allows for optimal development of processing software through the rapid viewing of many image frames in an interactive mode. Three critical optical devices are used to reproduce an image: an Optronics photo reader/writer, the Adage Graphics Terminal, and Polaroid Type 57 high speed film. Typical sources of digitized images are observation satellites, such as ERTS or Mariner, computer coupled electron microscopes for high-magnification studies, or computer coupled X-ray devices for medical research.

  4. In vivo amyloid aggregation kinetics tracked by time-lapse confocal microscopy in real-time.

    PubMed

    Villar-Piqué, Anna; Espargaró, Alba; Ventura, Salvador; Sabate, Raimon

    2016-01-01

    Amyloid polymerization underlies an increasing number of human diseases. Despite this process having been studied extensively in vitro, aggregation is a difficult process to track in vivo due to methodological limitations and the slow kinetics of aggregation reactions in cells and tissues. Herein we exploit the amyloid properties of the inclusions bodies (IBs) formed by amyloidogenic proteins in bacteria to address the kinetics of in vivo amyloid aggregation. To this aim we used time-lapse confocal microscopy and a fusion of the amyloid-beta peptide (A β42) with a fluorescent reporter. This strategy allowed us to follow the intracellular kinetics of amyloid-like aggregation in real-time and to discriminate between variants exhibiting different in vivo aggregation propensity. Overall, the approach opens the possibility to assess the impact of point mutations as well as potential anti-aggregation drugs in the process of amyloid formation in living cells.

  5. Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy

    PubMed Central

    Young, Jonathan W; Locke, James C W; Altinok, Alphan; Rosenfeld, Nitzan; Bacarian, Tigran; Swain, Peter S; Mjolsness, Eric; Elowitz, Michael B

    2014-01-01

    Quantitative single-cell time-lapse microscopy is a powerful method for analyzing gene circuit dynamics and heterogeneous cell behavior. We describe the application of this method to imaging bacteria by using an automated microscopy system. This protocol has been used to analyze sporulation and competence differentiation in Bacillus subtilis, and to quantify gene regulation and its fluctuations in individual Escherichia coli cells. The protocol involves seeding and growing bacteria on small agarose pads and imaging the resulting microcolonies. Images are then reviewed and analyzed using our laboratory's custom MATLAB analysis code, which segments and tracks cells in a frame-to-frame method. This process yields quantitative expression data on cell lineages, which can illustrate dynamic expression profiles and facilitate mathematical models of gene circuits. With fast-growing bacteria, such as E. coli or B. subtilis, image acquisition can be completed in 1 d, with an additional 1–2 d for progressing through the analysis procedure. PMID:22179594

  6. Time-lapse cinematography in living Drosophila tissues: preparation of material.

    PubMed

    Davis, Ilan; Parton, Richard M

    2006-01-01

    The fruit fly, Drosophila melanogaster, has been an extraordinarily successful model organism for studying the genetic basis of development and evolution. It is arguably the best-understood complex multicellular model system, owing its success to many factors. Recent developments in imaging techniques, in particular sophisticated fluorescence microscopy methods and equipment, now allow cellular events to be studied at high resolution in living material. This ability has enabled the study of features that tend to be lost or damaged by fixation, such as transient or dynamic events. Although many of the techniques of live cell imaging in Drosophila are shared with the greater community of cell biologists working on other model systems, studying living fly tissues presents unique difficulties in keeping the cells alive, introducing fluorescent probes, and imaging through thick hazy cytoplasm. This protocol outlines the preparation of major tissue types amenable to study by time-lapse cinematography and different methods for keeping them alive. PMID:22485989

  7. Generalized focusing of time-lapse changes with applications to direct current and time-domain induced polarization inversions

    NASA Astrophysics Data System (ADS)

    Fiandaca, Gianluca; Doetsch, Joseph; Vignoli, Giulio; Auken, Esben

    2015-11-01

    Often in geophysical monitoring experiments time-lapse inversion models vary too smoothly with time, owing to the strong imprint of regularization. Several methods have been proposed for focusing the spatiotemporal changes of the model parameters. In this study, we present two generalizations of the minimum support norm, which favour compact time-lapse changes and can be adapted to the specific problem requirements. Inversion results from synthetic direct current resistivity models that mimic developing plumes show that the focusing scheme significantly improves size, shape and magnitude estimates of the time-lapse changes. Inversions of the synthetic data also illustrate that the focused inversion gives robust results and that the focusing settings are easily chosen. Inversions of full-decay time-domain induced polarization (IP) field data from a CO2 monitoring injection experiment show that the focusing scheme performs well for field data and inversions for all four Cole-Cole polarization parameters. Our tests show that the generalized minimum support norms react in an intuitive and predictable way to the norm settings, implying that they can be used in time-lapse experiments for obtaining reliable and robust results.

  8. Motivations for Giving of Alumni Donors, Lapsed Donors and Non-Donors: Implications for Christian Higher Education

    ERIC Educational Resources Information Center

    Rugano, Emilio Kariuki

    2011-01-01

    This descriptive and causal comparative study sought to identify motivations for alumni donor acquisition and retention in Christian institutions of higher learning. To meet this objective, motivations for alumni donors, lapsed donors, and non-donors were analyzed and compared. Data was collected through an electronic survey of a stratified sample…

  9. Social Cognitive Analysis of Recovery from a Lapse after Smoking Cessation: Comment on Haaga and Stewart (1992).

    ERIC Educational Resources Information Center

    Devins, Gerald M.

    1992-01-01

    Responds to previous article by Haaga and Stewart on perceived self-efficacy for recovery of abstinence from smoking after lapse and success in maintaining abstinence. Identifies and addresses issues regarding application of social cognitive theory to such areas as smoking cessation. Examines distinctions between efficacy and outcome beliefs,…

  10. The use of time lapse photography in an in vitro fertilization programme for better selection for embryo transfer.

    PubMed

    Kovačič, Borut; Hojnik, Nina; Vlaisavljević, Veljko

    2014-01-01

    The time lapse photography is not a new method for assessing the dynamics of early embryo development in vitro. It has been used many times in the past for studying cleavages and blastulation of embryos of various animal species. However, this technique became available for routine use in an human in vitro fertilization (IVF) programme only a couple years ago and it becomes more and more popular today. The new time lapse systems are using modified microscopes which are positioned within the incubators. The observation of embryos does not need the opening of incubators. By sequential photographing of each embryo separately with camera of low intensity illumination, more than 1400 pictures of embryo are made. All these pictures are collected together and transformed into a short movie with software. This system offers the observation of dynamics of embryo development. The studies, which have used a time lapse technique for studying embryo development, revealed that the timing between different events can be used for predicting its developmental potential. In this paper the advantages and drawbacks of time lapse photography is precisely described. An overview through the published papers analyzing the dynamics of human embryo development from the zygote toward blastocyst is done and new timing parameters for grading zygotes, early embryos and blastocysts are analyzed.

  11. Smoking Abstinence-Induced Changes in Resting State Functional Connectivity with Ventral Striatum Predict Lapse During a Quit Attempt.

    PubMed

    Sweitzer, Maggie M; Geier, Charles F; Addicott, Merideth A; Denlinger, Rachel; Raiff, Bethany R; Dallery, Jesse; McClernon, F Joseph; Donny, Eric C

    2016-09-01

    The ventral and dorsal striatum are critical substrates of reward processing and motivation and have been repeatedly linked to addictive disorders, including nicotine dependence. However, little is known about how functional connectivity between these and other brain regions is modulated by smoking withdrawal and may contribute to relapse vulnerability. In the present study, 37 smokers completed resting state fMRI scans during both satiated and 24-h abstinent conditions, prior to engaging in a 3-week quit attempt supported by contingency management. We examined the effects of abstinence condition and smoking outcome (lapse vs non-lapse) on whole-brain connectivity with ventral and dorsal striatum seed regions. Results indicated a significant condition by lapse outcome interaction for both right and left ventral striatum seeds. Robust abstinence-induced increases in connectivity with bilateral ventral striatum were observed across a network of regions implicated in addictive disorders, including insula, superior temporal gyrus, and anterior/mid-cingulate cortex among non-lapsers; the opposite pattern was observed for those who later lapsed. For dorsal striatum seeds, 24-h abstinence decreased connectivity across both groups with several regions, including medial prefrontal cortex, posterior cingulate cortex, hippocampus, and supplemental motor area. These findings suggest that modulation of striatal connectivity with the cingulo-insular network during early withdrawal may be associated with smoking cessation outcomes. PMID:27091382

  12. Time-Lapse Joint Inversion of Cross-Well DC Resistivity and Seismic Data: A Numerical Investigation

    EPA Science Inventory

    Time-lapse joint inversion of geophysical data is required to image the evolution of oil reservoirs during production and enhanced oil recovery, CO2 sequestration, geothermal fields during production, and to monitor the evolution of contaminant plumes. Joint inversion schemes red...

  13. Spectral-element simulations of carbon dioxide (CO2) sequestration time-lapse monitoring

    NASA Astrophysics Data System (ADS)

    Morency, C.; Luo, Y.; Tromp, J.

    2009-12-01

    Geologic sequestration of CO2, a green house gas, represents an effort to reduce the large amount of CO2 generated as a by-product of fossil fuels combustion and emitted into the atmosphere. This process of sequestration involves CO2 storage deep underground. There are three main storage options: injection into hydrocarbon reservoirs, injection into methane-bearing coal beds, or injection into deep saline aquifers, that is, highly permeable porous media. The key issues involve accurate monitoring of the CO2, from the injection stage to the prediction & verification of CO2 movement over time for environmental considerations. A natural non-intrusive monitoring technique is referred to as ``4D seismics'', which involves 3D time-lapse seismic surveys. The success of monitoring the CO2 movement is subject to a proper description of the physics of the problem. We propose to realize time-lapse migrations comparing acoustic, elastic, and poroelastic simulations of 4D seismic imaging to characterize the storage zone. This approach highlights the influence of using different physical theories on interpreting seismic data, and, more importantly, on extracting the CO2 signature from the seismic wave field. Our simulations are performed using a spectral-element method, which allows for highly accurate results. Biot's equations are implemented to account for poroelastic effects. Attenuation associated with the anelasticity of the rock frame and frequency-dependent viscous resistance of the pore fluid are accommodated based upon a memory variable approach. The sensitivity of observables to the model parameters is quantified based upon finite-frequency sensitivity kernels calculated using an adjoint method.

  14. Assessment of Saturation Patterns on Agricultural Land Using Time-lapse Photography

    NASA Astrophysics Data System (ADS)

    Silasari, R.; Bloeschl, G.

    2015-12-01

    Agricultural land generates overland flow differently from natural environment due to features from anthropogenic activities such as cultivated soil layer and tile drain pipe. During rainfall events, the formation of overland flow may happen from infiltration excess and/or saturation excess according to the threshold processes which are influenced by rainfall characteristics and soil hydraulic parameters. The dynamics of threshold processes in varying rainfall and soil hydraulic conditions will affect the surface runoff response which can be inversely analyzed by visually observing the generated saturation patterns. This study aims to explore the use of time-lapse photographs of saturated plot during rainfall events to observe and understand the threshold processes of overland flow generation. The observation was conducted at Hydrological Open Air Laboratory (HOAL) in Lower Austria with a 2 megapixels surveillance camera overlooking a 1.8 ha tile-drained agricultural field situated on a hillslope. The main tile drain pipe extends from the higher ground into the riparian area - creating a depression line which generates the main saturation track. The time-lapse photographs are able to capture the spatial and temporal dynamics of 0.1 ha saturated plot (117 m long and 10 m wide in average) during three big rainfall events in 2014 which produced measurable overland flow. The photographs also manage to capture the behavior of overland flow on tractor tracks which were generated faster than on the main saturated plot - due to the more compacted soil - and contribute significantly to the overall overland flow discharge and movements. Comparison of the photographs with on-field manual plotting shows good accuracy of the captured saturation plot and the possibility of calculating the plot area digitally. This method gives opportunity to observe overland flow generation on visual basis as a complement of the customary discharge measurements.

  15. Time-lapse stereo-photogrammetry to monitor electrical sounding electrodes on an unstable slope

    NASA Astrophysics Data System (ADS)

    Gance, J.; Dewez, T.; Malet, J.-P.; Stumpf, A.

    2012-04-01

    Time-lapse electrical resistivity tomography (ERT) of landslides allows at characterizing the water flows inside the moving mass. Inversion of electrical measurements imposes to locate and track in time the positions of each electrode. The spacing of the electrodes is typically unknown if the electrodes are not equipped with a displacement monitoring system (total station, dGPS antennas, extensometers). Here we tackle this practical problem with time lapse stereo-photogrammetry. In the field, the electrodes were overlaid with white 10cm-diameter Styrofoam spheres and tracked in the stereophoto sequences through image processing of very-high resolution terrestrial photographs. The acquisition profile (114 m long) is located in the most active part of the Super-Sauze landslide which is experiencing average velocities of 2 to 3 cm.day-1 with possible sudden acceleration (0.4 m to 2.0 m.day-1 as observed in 2008). The two cameras are spaced by 75 m which leads to a B/h ratio ranging between 1.6 and 2.1 according to the distribution of electrodes within the image plane The image processing is composed of 4 stages: (i) removal of the slow camera motion, (ii) identification of the electrodes in the 2D image planes; (iii) correction of the lens distortion; (iv) computation of 3D electrode location for each image pair; (v) computation of ERT profile displacement. The method was applied on a serie of 17 photographs over a period of 29 days in June and July 2011. The displacements obtained from stereo-photogrammetry were compared to dGPS campaign measurements, and to the displacement monitored by a permanent GPS receiver.

  16. Improving time-lapse seismic repeatability: CO2CRC Otway site permanent geophone array field trials

    NASA Astrophysics Data System (ADS)

    Pevzner, Roman; Dupuis, Christian; Shulakova, Valeriya; Urosevic, Milovan; Lumley, David

    2013-04-01

    The proposed Stage 2C of the CO2CRC Otway project involves injection of a small amount (around 15,000 tonnes) of CO2/CH4 gas mixture into saline acquifer (Paaratte formation) at the depth of ~1.5 km. The seismic time-lapse signal will depend largely on the formation properties and the injection scenario, but is likely to be relatively weak. In order to improve time-lapse seismic monitoring capabilities by decreasing the noise level, a buried receiver arrays can be used. A small-scale trial of such an array was conducted at Otway site in June 2012. A set of 25 geophones was installed in 3 m deep boreholes in parallel to the same number of surface geophones. In addition, four geophones were placed into boreholes of 1 to 12 m depth. In order to assess the gain in the signal-to-noise ratio and repeatability, both active and passive seismic surveys were carried out. The surveys were conducted in relatively poor weather conditions, with rain, strong wind and thunderstorms increasing the noise level. We found that noise level for buried geophones is on average 20 dB lower compared to the surface ones. Furthermore, the combination of active and passive experiments has allowed us to perform a detailed classification of various noise sources. Acknowledgement The authors acknowledge the funding provided by the Australian government through its CRC program to support this CO2CRC research project. We also acknowledge the CO2CRC's corporate sponsors and the financial assistance provided through Australian National Low Emissions Coal Research and Development (ANLEC R&D). ANLEC R&D is supported by Australian Coal Association Low Emissions Technology Limited and the Australian Government through the Clean Energy Initiative.

  17. Low-cost motility tracking system (LOCOMOTIS) for time-lapse microscopy applications and cell visualisation.

    PubMed

    Lynch, Adam E; Triajianto, Junian; Routledge, Edwin

    2014-01-01

    Direct visualisation of cells for the purpose of studying their motility has typically required expensive microscopy equipment. However, recent advances in digital sensors mean that it is now possible to image cells for a fraction of the price of a standard microscope. Along with low-cost imaging there has also been a large increase in the availability of high quality, open-source analysis programs. In this study we describe the development and performance of an expandable cell motility system employing inexpensive, commercially available digital USB microscopes to image various cell types using time-lapse and perform tracking assays in proof-of-concept experiments. With this system we were able to measure and record three separate assays simultaneously on one personal computer using identical microscopes, and obtained tracking results comparable in quality to those from other studies that used standard, more expensive, equipment. The microscopes used in our system were capable of a maximum magnification of 413.6×. Although resolution was lower than that of a standard inverted microscope we found this difference to be indistinguishable at the magnification chosen for cell tracking experiments (206.8×). In preliminary cell culture experiments using our system, velocities (mean µm/min ± SE) of 0.81 ± 0.01 (Biomphalaria glabrata hemocytes on uncoated plates), 1.17 ± 0.004 (MDA-MB-231 breast cancer cells), 1.24 ± 0.006 (SC5 mouse Sertoli cells) and 2.21 ± 0.01 (B. glabrata hemocytes on Poly-L-Lysine coated plates), were measured and are consistent with previous reports. We believe that this system, coupled with open-source analysis software, demonstrates that higher throughput time-lapse imaging of cells for the purpose of studying motility can be an affordable option for all researchers.

  18. Improved Characterization of the Vadose Zone with Time-Lapsed Ground-Penetrating Radar

    NASA Astrophysics Data System (ADS)

    Kowalsky, M. B.; Rubin, Y.

    2001-12-01

    Outcrop studies are increasingly performed to develop realistic heterogeneous subsurface models for application to water resources issues (e.g., agricultural, contaminant transport). Such studies have helped identify goal-specific characterization targets such as fast paths which can accelerate contaminant breakthrough, or sand-rich regions which are responsible for retardation of reactive contaminants in the saturated zone. The use of ground-penetrating radar (GPR) as a means for delineating such subsurface structure has recently received much attention. It has been shown that GPR field data is strongly affected by non-uniform water saturation in addition to structural heterogeneity. GPR data is, therefore, potentially rich in information about both water content and subsurface structure, though these combined effects can lead to non-unique interpretations of data. In this study, variably saturated flow and GPR are simulated simultaneously to investigate the relation between transient fluid flow in the Vadose zone and the resulting time-lapsed GPR response; the model used for this purpose is based on an outcrop analog site located at a gravel quarry in South-West Germany where co-located hydrologic and geophysical data are also available. Temporal changes in water content, and therefore in electrical parameters, are seen to be related to soil type, and even more so to the spatial sequence of permeability. For example, open-framework gravel (with permeability higher than in the surrounding lithologic units by several orders of magnitude) drain almost instantaneously and typically underlie regions of ponded water, characterized by an increased water content and slow drainage (as compared to underneath the gravel). However, the rate of drainage is also highly dependent on two-dimensional permeability effects such as the slope and continuity of the lithologic units and adjacent permeability structure. Synthetic time-lapsed GPR data are examined and shown to be

  19. Evaluating time-lapse ERT for monitoring DNAPL remediation via numerical simulation

    NASA Astrophysics Data System (ADS)

    Power, C.; Karaoulis, M.; Gerhard, J.; Tsourlos, P.; Giannopoulos, A.

    2012-12-01

    Dense non-aqueous phase liquids (DNAPLs) remain a challenging geoenvironmental problem in the near subsurface. Numerous thermal, chemical, and biological treatment methods are being applied at sites but without a non-destructive, rapid technique to map the evolution of DNAPL mass in space and time, the degree of remedial success is difficult to quantify. Electrical resistivity tomography (ERT) has long been presented as highly promising in this context but has not yet become a practitioner's tool due to challenges in interpreting the survey results at real sites where the initial condition (DNAPL mass, DNAPL distribution, subsurface heterogeneity) is typically unknown. Recently, a new numerical model was presented that couples DNAPL and ERT simulation at the field scale, providing a tool for optimizing ERT application and interpretation at DNAPL sites (Power et al., 2011, Fall AGU, H31D-1191). The objective of this study is to employ this tool to evaluate the effectiveness of time-lapse ERT to monitor DNAPL source zone remediation, taking advantage of new inversion methodologies that exploit the differences in the target over time. Several three-dimensional releases of chlorinated solvent DNAPLs into heterogeneous clayey sand at the field scale were generated, varying in the depth and complexity of the source zone (target). Over time, dissolution of the DNAPL in groundwater was simulated with simultaneous mapping via periodic ERT surveys. Both surface and borehole ERT surveys were conducted for comparison purposes. The latest four-dimensional ERT inversion algorithms were employed to generate time-lapse isosurfaces of the DNAPL source zone for all cases. This methodology provided a qualitative assessment of the ability of ERT to track DNAPL mass removal for complex source zones in realistically heterogeneous environments. In addition, it provided a quantitative comparison between the actual DNAPL mass removed and that interpreted by ERT as a function of depth below

  20. Time-Lapse Video Microscopy for Assessment of EYFP-Parkin Aggregation as a Marker for Cellular Mitophagy.

    PubMed

    Di Sante, Gabriele; Casimiro, Mathew C; Pestell, Timothy G; Pestell, Richard G

    2016-01-01

    Time-lapse video microscopy can be defined as the real time imaging of living cells. This technique relies on the collection of images at different time points. Time intervals can be set through a computer interface that controls the microscope-integrated camera. This kind of microscopy requires both the ability to acquire very rapid events and the signal generated by the observed cellular structure during these events. After the images have been collected, a movie of the entire experiment is assembled to show the dynamic of the molecular events of interest. Time-lapse video microscopy has a broad range of applications in the biomedical research field and is a powerful and unique tool for following the dynamics of the cellular events in real time. Through this technique, we can assess cellular events such as migration, division, signal transduction, growth, and death. Moreover, using fluorescent molecular probes we are able to mark specific molecules, such as DNA, RNA or proteins and follow them through their molecular pathways and functions. Time-lapse video microscopy has multiple advantages, the major one being the ability to collect data at the single-cell level, that make it a unique technology for investigation in the field of cell biology. However, time-lapse video microscopy has limitations that can interfere with the acquisition of high quality images. Images can be compromised by both external factors; temperature fluctuations, vibrations, humidity and internal factors; pH, cell motility. Herein, we describe a protocol for the dynamic acquisition of a specific protein, Parkin, fused with the enhanced yellow fluorescent protein (EYFP) in order to track the selective removal of damaged mitochondria, using a time-lapse video microscopy approach. PMID:27168174

  1. Monitoring channel head erosion processes in response to an artificially induced abrupt base level change using time-lapse photography

    NASA Astrophysics Data System (ADS)

    Nichols, M. H.; Nearing, M.; Hernandez, M.; Polyakov, V. O.

    2016-07-01

    Gullies that terminate at a vertical-wall are ubiquitous throughout arid and semiarid regions. Multi-year assessments of gully evolution and headcut advance are typically accomplished using traditional ground surveys and aerial photographs, with much recent research focused on integrating data collected at very high spatial resolutions using new techniques such as aerial surveys with blimps or kites and ground surveys with LiDar scanners. However, knowledge of specific processes that drive headcut advance is limited due to inadequate observation and documentation of flash floods and subsequent erosion that can occur at temporal resolutions not captured through repeat surveys. This paper presents a method for using very-high temporal resolution ground-based time-lapse photography to capture short-duration flash floods and gully head evolution in response. In 2004, a base level controlling concrete weir was removed from the outlet of a 1.29 ha semiarid headwater drainage on the Walnut Gulch Experimental Watershed in southeastern Arizona, USA. During the ten year period from 2004 to 2014 the headcut migrated upchannel a total of 14.5 m reducing the contributing area at the headwall by 9.5%. Beginning in July 2012, time-lapse photography was employed to observe event scale channel evolution dynamics. The most frequent erosion processes observed during three seasons of time-lapse photography were plunge pool erosion and mass wasting through sidewall or channel headwall slumping that occurred during summer months. Geomorphic change during the ten year period was dominated by a single piping event in August 2014 that advanced the channel head 7.4 m (51% of the overall advance) and removed 11.3 m3 of sediment. High temporal resolution time-lapse photography was critical for identifying subsurface erosion processes, in the absence of time-lapse images piping would not have been identified as an erosion mechanism responsible for advancing the gully headwall at this site.

  2. Perspective: the education community must develop best practices informed by evidence-based research to remediate lapses of professionalism.

    PubMed

    Papadakis, Maxine A; Paauw, Douglas S; Hafferty, Frederic W; Shapiro, Jo; Byyny, Richard L

    2012-12-01

    In July 2011, the Alpha Omega Alpha Honor Medical Society sponsored a think tank of experts in the field of medical professionalism to focus on interventions and remediation strategies for those-medical students, residents, faculty, and practicing physicians-who demonstrate lapses in professional performance, particularly if the lapses are repeated. Several participants have produced scholarly work on the assessment of professionalism. However, assessment has a limited purpose unless it leads to improvements at both the organizational and individual levels. The field of professionalism has matured enough to recognize that one of the contemporary issues within the self-regulation framework is the task of remediation. Yet there is a paucity of evidence to inform best practices to help those who have lapses. Ultimately, the most effective response to an individual's lapse in professionalism may not be simply to gather knowledge about remedial practices but also to understand organizational responses to the information about such practices already possessed by the institution.The authors report the think tank participants' recommendations on (1) how to use existing data on professionalism remediation and (2) what new evidence is needed to advance approaches to remediation of professional performance. Participants also recommended that the education community can focus on interventions and remediation by (1) performing studies about improving medical professionalism when lapses occur, (2) identifying best evidence-based remediation practices, (3) widely disseminating those practices, and (4) moving over time from a best-practices approach to remediation (which does not yet exist) to a best-evidence model.

  3. Environmental monitoring of leaks using time-lapsed long electrode electrical resistivity

    NASA Astrophysics Data System (ADS)

    Rucker, Dale F.; Fink, James B.; Loke, Meng H.

    2011-08-01

    Highly industrialized areas pose challenges for surface electrical resistivity characterization due to metallic infrastructure. The infrastructure is typically more conductive than the desired targets and will mask the deeper subsurface information. The risk of this occurring may be minimized if steel-cased wells are used as long electrodes in the area near the target. We demonstrate a method of using long electrodes to electrically monitor a simulated leak from an underground storage tank with both synthetic examples and a field demonstration. Although the method of using long electrodes has been proposed by others, no time-lapse resistivity data have been collected, modeled, and analyzed within a nuclear waste tank farm environment. Therefore, the main objective of this work was to test whether the long electrode method using steel-cased wells can be employed to spatially and temporally track simulated leaks in a highly industrialized setting. A secondary objective was to apply a time-lapse regularization procedure in the inverse modeling code, similar to the 4D tomography approach by Kim et al. (2009), and to test the procedure's effect on the quality of the outcome regarding plume intensity and position. For the synthetic examples, a simple target of varying electrical properties was placed beneath different types of layers of low resistivity to simulate the effects of the infrastructure. Both surface and long electrodes were tested on the synthetic domain, and the test cases covered a variety of survey parameters including low and high electrode density, noise, array type, and the explicit location of the wells relative to the target. All data were processed in four dimensions, where the regularization procedure was applied in both the time and space domains. The synthetic test case showed that the long electrode resistivity method could detect relative changes in resistivity that was commensurate with the differing target properties. The surface electrodes

  4. Fast history matching of time-lapse seismic and production data for high resolution models

    NASA Astrophysics Data System (ADS)

    Jimenez Arismendi, Eduardo Antonio

    Integrated reservoir modeling has become an important part of day-to-day decision analysis in oil and gas management practices. A very attractive and promising technology is the use of time-lapse or 4D seismic as an essential component in subsurface modeling. Today, 4D seismic is enabling oil companies to optimize production and increase recovery through monitoring fluid movements throughout the reservoir. 4D seismic advances are also being driven by an increased need by the petroleum engineering community to become more quantitative and accurate in our ability to monitor reservoir processes. Qualitative interpretations of time-lapse anomalies are being replaced by quantitative inversions of 4D seismic data to produce accurate maps of fluid saturations, pore pressure, temperature, among others. Within all steps involved in this subsurface modeling process, the most demanding one is integrating the geologic model with dynamic field data, including 4Dseismic when available. The validation of the geologic model with observed dynamic data is accomplished through a "history matching" (HM) process typically carried out with well-based measurements. Due to low resolution of production data, the validation process is severely limited in its reservoir areal coverage, compromising the quality of the model and any subsequent predictive exercise. This research will aim to provide a novel history matching approach that can use information from high-resolution seismic data to supplement the areally sparse production data. The proposed approach will utilize streamline-derived sensitivities as means of relating the forward model performance with the prior geologic model. The essential ideas underlying this approach are similar to those used for high-frequency approximations in seismic wave propagation. In both cases, this leads to solutions that are defined along "streamlines" (fluid flow), or "rays" (seismic wave propagation). Synthetic and field data examples will be used

  5. Geoelectrical time-lapse analysis for improved interpretation of data in a contaminated area

    NASA Astrophysics Data System (ADS)

    Chitea, Florina; Serban, Adrian; Ioane, Dumitru; Georgescu, Paul

    2014-05-01

    Non invasive geoelectrical studies are useful in the preliminary assessment of areas suspected to be contaminated but also in the investigation stage. Correctly adapted to the site specific situation, they are used to detect and investigate buried sources of pollution, to characterize the geology of the area, to detect the contaminated plume or to study the attenuation of pollution in case the appliance of an site-specific remediation techniques. Despite the improved technological acquisition techniques and the optimized inversion data algorithms, interpretation of geoelectrical data in still a challenging task, especially in a contaminated hydrogeological context. Beside the soil physical properties (composition, porosity, texture, etc.), moisture content and chemical composition of the pollutant are also influencing the measured parameter. Apparent electrical resistivity method was use in an area located near an Oil Refinery. Electrical measurements performed on profiles (transverse and along the direction of water flow -according to hydrological data) revealed the presence of contaminants by means of high resistivity anomalies. Using the same acquisition technique (Schlumberger array, same VES points, injection - AB - and voltage - MN - lines extension), measurements were repeated during time, along the same profiles. On the resulted electrical sections from 2006 to 2013, a dynamic situation regarding the pollution plume was observed. Time - lapse analysis, based on the calculation of resistivity differences between sets of data acquired along the same profile was applied, and data interpretation was made using the resulted sections. Significant variation between data sets (> 17% of apparent resistivity normalized differences) observed along the main profile were mainly ranging from the near surface (1.5 m) to an approximated depth (AB/2) of 10m. Using the time-lapse method, changes in the lateral and in depth extension of polluted areas could be observed and

  6. Morphokinetic behavior of euploid and aneuploid embryos analyzed by time-lapse in embryoscope

    PubMed Central

    Patel, Deven V.; Shah, Preeti B.; Kotdawala, Aditi P.; Herrero, Javier; Rubio, Irene; Banker, Manish R.

    2016-01-01

    BACKGROUND: Embryonic aneuploidy may result in miscarriage, implantation failure, or birth defects. Thus, it is clinically necessary to avoid the selection of aneuploid embryos during in vitro fertilization treatment. AIM: The aim of this study was to identify the morphokinetic differences by analyzing the development of euploid and aneuploid embryos using a time-lapse technology. We also checked the accuracy of a previously described model for selection of euploid embryos based on morphokinetics in our study population. MATERIALS AND METHODS: It is a retrospective study of 29 cycles undergoing preimplantation genetic screening from October 2013 to April 2015 at our center. Of 253 embryos, 167 suitable for biopsy embryos were analyzed for their chromosomal status using array-comparative genome hybridization (CGH). The morphokinetic behavior of these embryos was further analyzed in embryoscope using time-lapse technology. RESULTS: Among the analyzed embryos, 41 had normal and 126 had abnormal chromosome content. No significant difference in morphokinetics was found between euploid and aneuploid embryos. The percentage of embryos with blastulation was similar in the euploid (65.85%, 27/41) and aneuploid (60.31%, 76/126) embryos (P = 0.76). Although hard to define, majority of the chromosomal defects might be due to meiotic errors. On applying embryo selection model from Basile et al., embryos falling within optimal ranges for time to division to 5 cells (t5), time period of the third cell cycle (CC3), and time from 2 cell division to 5 cell division (t5-t2) exhibited greater proportion of normal embryos than those falling outside the optimal ranges (28.6%, 25.9%, and 26.7% vs. 17.5%, 20.8%, and 14.3%). CONCLUSION: Keeping a track of time interval between two stages can help us recognize aneuploid embryos at an earlier stage and prevent their selection of transfer. However, it cannot be used as a substitute for array CGH to select euploid embryos for transfer. PMID

  7. Acquisition of time-lapse, 6-component, P- and S-wave, crosswell seismic survey with orbital vibrator and of time-lapse VSP for CO2 injection monitoring

    SciTech Connect

    Daley, Tom; Daley, T.M.; Myer, L.R.; Majer, E.L.

    2004-07-15

    Using an orbital vibrator source (2-components), and a 40 level 3-component geophone string, a 6-component crosswell survey was acquired before and after a CO2 injection in a saline aquifer. Decomposition of the two source components and component rotation of both source and sensors created good separation of P- and S-wave energy allowing independent analysis of travel time and reflectivity. A time-lapse VSP was also acquired.

  8. Time-lapse CO2 monitoring using ambient-noise seismic interferometry: a feasibility study from Ketzin, Germany

    NASA Astrophysics Data System (ADS)

    Boullenger, Boris; Verdel, Arie; Paap, Bob; Thorbecke, Jan; Draganov, Deyan

    2015-04-01

    Seismic interferometry applied to ambient-noise measurements allows retrieval of the Green's function between two seismic receivers, by cross-correlating their recordings, as if from a source at one of the receivers. We propose to use ambient-noise seismic interferometry (ANSI) to retrieve reflection data. The time-lapse differences between different vintages of the retrieved data may help characterize property changes within a geologic reservoir with varying CO2 saturation. We test the feasibility of this time-lapse passive seismic method with numerical experiments based on the CO2-storage site of Ketzin, Germany. Ambient-noise recordings from Ketzin exhibit significant passive body-wave energy (from natural tremors or induced seismicity in the vicinity of the reservoir), which is advantageous to retrieve reflections with ANSI. The ANSI numerical experiments aim to understand what the requirements are for the recorded body-wave noise to retrieve the time-lapse reflection signal caused by an increase of CO2 saturation in the reservoir. For this purpose, we design two velocity scenarios at Ketzin: a base scenario before the injection of CO2, and a repeat scenario corresponding to a P-wave velocity decline in the reservoir by 20 percent. For both scenarios, we simulate passive seismic experiments of body-wave noise recordings that may take several days or months to record in the field. The passive recordings are obtained by modelling global (direct wave, internal and surface multiples) transmission responses from band-limited subsurface noise sources, randomly triggered in space and time. The time-lapse reflection signal is obtained by taking the differences between the base and the repeat retrieved reflection data (virtual common-shot gathers). We found that the time-lapse signal is still recovered with ANSI even if the base and repeat retrieved reflection data are partially polluted with artifacts. This means that uneven illumination of the array does not

  9. Three dimensional time lapse imaging of live cell mitochondria with photothermal optical lock-in optical coherence microscopy (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Sison, Miguel; Chakrabortty, Sabyasachi; Extermann, Jerome; Nahas, Amir; Pache, Christophe; Weil, Tanja; Lasser, Theo

    2016-03-01

    The photothermal optical lock-in optical coherence microscope (poli-OCM) introduced molecular specificity to OCM imaging, which is conventionally, a label-free technique. Here we achieve three-dimensional live cell and mitochondria specific imaging using ~4nm protein-functionalized gold nanoparticles (AuNPs). These nanoparticles do not photobleach and we demonstrate they're suitability for long-term time lapse imaging. We compare the accuracy of labelling with these AuNPs using classical fluorescence confocal imaging with a standard mitochondria specific marker. Furthermore, time lapse poli-OCM imaging every 5 minutes over 1.5 hours period was achieved, revealing the ability for three-dimensional monitoring of mitochondria dynamics.

  10. Time lapse investigation of antibiotic susceptibility using a microfluidic linear gradient 3D culture device.

    PubMed

    Hou, Zining; An, Yu; Hjort, Karin; Hjort, Klas; Sandegren, Linus; Wu, Zhigang

    2014-09-01

    This study reports a novel approach to quantitatively investigate the antibacterial effect of antibiotics on bacteria using a three-dimensional microfluidic culture device. In particular, our approach is suitable for studying the pharmacodynamics effects of antibiotics on bacterial cells temporally and with a continuous range of concentrations in a single experiment. The responses of bacterial cells to a linear concentration gradient of antibiotics were observed using time-lapse photography, by encapsulating bacterial cells in an agarose-based gel located in a commercially available microfluidics chamber. This approach generates dynamic information with high resolution, in a single operation, e.g., growth curves and antibiotic pharmacodynamics, in a well-controlled environment. No pre-labelling of the cells is needed and therefore any bacterial sample can be tested in this setup. It also provides static information comparable to that of standard techniques for measuring minimum inhibitory concentration (MIC). Five antibiotics with different mechanisms were analysed against wild-type Escherichia coli, Staphylococcus aureus and Salmonella Typhimurium. The entire process, including data analysis, took 2.5-4 h and from the same analysis, high-resolution growth curves were obtained. As a proof of principle, a pharmacodynamic model of streptomycin against Salmonella Typhimurium was built based on the maximal effect model, which agreed well with the experimental results. Our approach has the potential to be a simple and flexible solution to study responding behaviours of microbial cells under different selection pressures both temporally and in a range of concentrations.

  11. Non-rigid estimation of cell motion in calcium time-lapse images

    NASA Astrophysics Data System (ADS)

    Hachi, Siham; Lucumi Moreno, Edinson; Desmet, An-Sofie; Vanden Berghe, Pieter; Fleming, Ronan M. T.

    2016-03-01

    Calcium imaging is a widely used technique in neuroscience permitting the simultaneous monitoring of electro- physiological activity of hundreds of neurons at single cell resolution. Identification of neuronal activity requires rapid and reliable image analysis techniques, especially when neurons fire and move simultaneously over time. Traditionally, image segmentation is performed to extract individual neurons in the first frame of a calcium sequence. Thereafter, the mean intensity is calculated from the same region of interest in each frame to infer calcium signals. However, when cells move, deform and fire, this segmentation on its own generates artefacts and therefore biased neuronal activity. Therefore, there is a pressing need to develop a more efficient cell tracking technique. We hereby present a novel vision-based cell tracking scheme using a thin-plate spline deformable model. The thin-plate spline warping is based on control points detected using the Fast from Accelerated Segment Test descriptor and tracked using the Lucas-Kanade optical flow. Our method is able to track neurons in calcium time-series, even when there are large changes in intensity, such as during a firing event. The robustness and efficiency of the proposed approach is validated on real calcium time-lapse images of a neuronal population.

  12. Image-based characterization of thrombus formation in time-lapse DIC microscopy.

    PubMed

    Brieu, Nicolas; Navab, Nassir; Serbanovic-Canic, Jovana; Ouwehand, Willem H; Stemple, Derek L; Cvejic, Ana; Groher, Martin

    2012-05-01

    The characterization of thrombus formation in time-lapse DIC microscopy is of increased interest for identifying genes which account for atherothrombosis and coronary artery diseases (CADs). In particular, we are interested in large-scale studies on zebrafish, which result in large amount of data, and require automatic processing. In this work, we present an image-based solution for the automatized extraction of parameters quantifying the temporal development of thrombotic plugs. Our system is based on the joint segmentation of thrombotic and aortic regions over time. This task is made difficult by the low contrast and the high dynamic conditions observed in vivo DIC microscopic scenes. Our key idea is to perform this segmentation by distinguishing the different motion patterns in image time series rather than by solving standard image segmentation tasks in each image frame. Thus, we are able to compensate for the poor imaging conditions. We model motion patterns by energies based on the idea of dynamic textures, and regularize the model by two prior energies on the shape of the aortic region and on the topological relationship between the thrombus and the aorta. We demonstrate the performance of our segmentation algorithm by qualitative and quantitative experiments on synthetic examples as well as on real in vivo microscopic sequences.

  13. Deciphering the Receptor Repertoire Encoding Specific Odorants by Time-Lapse Single-Cell Array Cytometry

    PubMed Central

    Suzuki, Masato; Yoshimoto, Nobuo; Shimono, Ken; Kuroda, Shun’ichi

    2016-01-01

    Mammals can recognize a vast number of odorants by using olfactory receptors (ORs) known as G protein-coupled receptors. The OR gene family is one of the most diverse gene families in mammalian genomes. Because of the vast combinations of ORs and odorants, few ORs have thus far been linked to specific odorants. Here, we established a functional screening method for OR genes by using a microchamber array containing >5,400 single olfactory epithelium-derived cells from mice applied to time-lapse single-cell array cytometry. This method facilitated the prompt isolation of single olfactory sensory neurons (OSNs) responding to the odorant of interest. Subsequent single-cell RT-PCR allowed us to isolate the genes encoding respective ORs. By using volatile molecules recognized as biomarkers for lung cancers, this method could deorphanize ORs and thereby reconstitute the OR-mediated signaling cascade in HEK293T cells. Thus, our system could be applied to identify any receptor by using specific ligands in the fields of physiopathology and pharmacology. PMID:26832639

  14. Protein Kinase A Catalytic Subunit Primed for Action: Time-Lapse Crystallography of Michaelis Complex Formation.

    PubMed

    Das, Amit; Gerlits, Oksana; Parks, Jerry M; Langan, Paul; Kovalevsky, Andrey; Heller, William T

    2015-12-01

    The catalytic subunit of the cyclic AMP-dependent protein kinase A (PKAc) catalyzes the transfer of the γ-phosphate of bound Mg2ATP to a serine or threonine residue of a protein substrate. Here, time-lapse X-ray crystallography was used to capture a series of complexes of PKAc with an oligopeptide substrate and unreacted Mg2ATP, including the Michaelis complex, that reveal important geometric rearrangements in and near the active site preceding the phosphoryl transfer reaction. Contrary to the prevailing view, Mg(2+) binds first to the M1 site as a complex with ATP and is followed by Mg(2+) binding to the M2 site. Concurrently, the target serine hydroxyl of the peptide substrate rotates away from the active site toward the bulk solvent, which breaks the hydrogen bond with D166. Lastly, the serine hydroxyl of the substrate rotates back toward D166 to form the Michaelis complex with the active site primed for phosphoryl transfer.

  15. A time-lapse photography method for monitoring salmon (Oncorhynchus spp.) passage and abundance in streams.

    PubMed

    Deacy, William W; Leacock, William B; Eby, Lisa A; Stanford, Jack A

    2016-01-01

    Accurately estimating population sizes is often a critical component of fisheries research and management. Although there is a growing appreciation of the importance of small-scale salmon population dynamics to the stability of salmon stock-complexes, our understanding of these populations is constrained by a lack of efficient and cost-effective monitoring tools for streams. Weirs are expensive, labor intensive, and can disrupt natural fish movements. While conventional video systems avoid some of these shortcomings, they are expensive and require excessive amounts of labor to review footage for data collection. Here, we present a novel method for quantifying salmon in small streams (<15 m wide, <1 m deep) that uses both time-lapse photography and video in a model-based double sampling scheme. This method produces an escapement estimate nearly as accurate as a video-only approach, but with substantially less labor, money, and effort. It requires servicing only every 14 days, detects salmon 24 h/day, is inexpensive, and produces escapement estimates with confidence intervals. In addition to escapement estimation, we present a method for estimating in-stream salmon abundance across time, data needed by researchers interested in predator--prey interactions or nutrient subsidies. We combined daily salmon passage estimates with stream specific estimates of daily mortality developed using previously published data. To demonstrate proof of concept for these methods, we present results from two streams in southwest Kodiak Island, Alaska in which high densities of sockeye salmon spawn. PMID:27326378

  16. Quantitative comparison of multiframe data association techniques for particle tracking in time-lapse fluorescence microscopy.

    PubMed

    Smal, Ihor; Meijering, Erik

    2015-08-01

    Biological studies of intracellular dynamic processes commonly require motion analysis of large numbers of particles in live-cell time-lapse fluorescence microscopy imaging data. Many particle tracking methods have been developed in the past years as a first step toward fully automating this task and enabling high-throughput data processing. Two crucial aspects of any particle tracking method are the detection of relevant particles in the image frames and their linking or association from frame to frame to reconstruct the trajectories. The performance of detection techniques as well as specific combinations of detection and linking techniques for particle tracking have been extensively evaluated in recent studies. Comprehensive evaluations of linking techniques per se, on the other hand, are lacking in the literature. Here we present the results of a quantitative comparison of data association techniques for solving the linking problem in biological particle tracking applications. Nine multiframe and two more traditional two-frame techniques are evaluated as a function of the level of missing and spurious detections in various scenarios. The results indicate that linking techniques are generally more negatively affected by missing detections than by spurious detections. If misdetections can be avoided, there appears to be no need to use sophisticated multiframe linking techniques. However, in the practically likely case of imperfect detections, the latter are a safer choice. Our study provides users and developers with novel information to select the right linking technique for their applications, given a detection technique of known quality.

  17. Time-lapse geophysical investigations over a simulated urban clandestine grave.

    PubMed

    Pringle, Jamie K; Jervis, John; Cassella, John P; Cassidy, Nigel J

    2008-11-01

    A simulated clandestine shallow grave was created within a heterogeneous, made-ground, urban environment where a clothed, plastic resin, human skeleton, animal products, and physiological saline were placed in anatomically correct positions and re-covered to ground level. A series of repeat (time-lapse), near-surface geophysical surveys were undertaken: (1) prior to burial (to act as control), (2) 1 month, and (3) 3 months post-burial. A range of different geophysical techniques was employed including: bulk ground resistivity and conductivity, fluxgate gradiometry and high-frequency ground penetrating radar (GPR), soil magnetic susceptibility, electrical resistivity tomography (ERT), and self potential (SP). Bulk ground resistivity and SP proved optimal for initial grave location whilst ERT profiles and GPR horizontal "time-slices" showed the best spatial resolutions. Research suggests that in complex urban made-ground environments, initial resistivity surveys be collected before GPR and ERT follow-up surveys are collected over the identified geophysical anomalies. PMID:18808369

  18. High-resolution time-lapse tomography of rat vertebrae during compressive loading: deformation response analysis

    NASA Astrophysics Data System (ADS)

    Fíla, T.; Kytýř, D.; Zlámal, P.; Kumpová, I.; Doktor, T.; Koudelka, P.; Jiroušek, O.

    2014-05-01

    This paper is focused on investigation of mechanical properties of rat vertebrae during compressive loading in the longitudinal direction of rat's spine. High-resolution time-lapse micro-tomography was used as a tool to create models of the inner structure and deformed shape in pre-defined deformation steps. First, peripheral areas of vertebra specimen were embedded in polymethyl methacrylate to obtain proper boundary conditions of contact between specimen and loading plattens. Experimental loading device designed for application in X-ray setups was utilized to compress the vertebrae in several deformation steps. High-resolution micro-tomography scanning was carried out at each deformation step. Specimen was irradiated in tomography device equipped with microfocus X-ray tube with 5μm focal spot size and large area flat panel detector. Spatial resolution of reconstructed three-dimensional images was approximately 10μm. Digital volume correlation algorithm was utilized in order to assess displacements in the microstructure in every loading increment. Finite element model of vertebra was created from volumetric data reconstructed from tomography of the undeformed specimen. Simulated compressive test of the developed finite element model was performed in order to compare stiffness and displacements obtained by digital volume correlation and finite element simulation.

  19. Time-Lapse Dynamics of the Mouse Oocyte Chromatin Organisation during Meiotic Resumption

    PubMed Central

    Redi, Carlo Alberto; Zuccotti, Maurizio

    2014-01-01

    In the mammalian oocyte, distinct patterns of centromeres and pericentromeric heterochromatin localisation correlate with the gamete's developmental competence. Mouse antral oocytes display two main types of chromatin organisation: SN oocytes, with a ring of Hoechst-positive chromatin surrounding the nucleolus, and NSN oocytes lacking this ring. When matured to MII and fertilised, only SN oocytes develop beyond the 2-cell, and reach full term. To give detailed information on the dynamics of the SN or NSN chromatin during meiosis resumption, we performed a 9 hr time-lapse observation. The main significant differences recorded are: (1) reduction of the nuclear area only in SN oocytes; (2) ~17 min delay of GVBD in NSN oocytes; (3) chromatin condensation, after GVBD, in SN oocytes; (4) formation of 4-5 CHCs in SN oocytes; (5) increase of the perivitelline space, ~57 min later in NSN oocytes; (6) formation of a rosette-like disposition of CHCs, ~84 min later in SN oocytes; (7) appearance of the MI plate ~40 min later in NSN oocytes. Overall, we described a pathway of transition from the GV to the MII stage that is punctuated of discrete recordable events showing their specificity and occurring with different time kinetics in the two types of oocytes. PMID:24864231

  20. Developmental dynamics of IMSI-derived embryos: a time-lapse prospective study.

    PubMed

    Knez, Katja; Tomazevic, Tomaz; Vrtacnik-Bokal, Eda; Virant-Klun, Irma

    2013-08-01

    Because sperm vacuoles were marked as zones without chromatin in the sperm nucleus, which may reflect underlying chromosomal or DNA defects, this study considered whether they influence the morphology and dynamics of early developmental events in preimplantation embryos. Oocytes were injected with spermatozoa of four classes, according to the number and size of vacuoles at ×6000 magnification, and derived embryos were observed under time-lapse microscopy. For each embryo, the times of pronuclei appearance and disappearance and the first, second and third divisions were determined and related to its respective class of injected spermatozoa and its developmental stage. Embryos arising from normal class-I spermatozoa (without vacuoles) reached the 4-cell stage significantly earlier than embryos developed from class-IV spermatozoa (with large vacuoles and other abnormalities) (P=0.012). Blastocysts from class-I spermatozoa required the shortest mean time for all developmental events in comparison with blastocysts from spermatozoa of other classes (with vacuoles). Blastocysts also showed significantly earlier first division than arrested embryos in embryos arising from class-I spermatozoa (P=0.033). An insight into the developmental dynamics of embryo development according to morphology and head vacuoles of injected spermatozoa in morphologically selected sperm-derived embryos was observed for the first time.

  1. Comparison of gender-specific human embryo development characteristics by time-lapse technology.

    PubMed

    Serdarogullari, Munevver; Findikli, Necati; Goktas, Cihan; Sahin, Oya; Ulug, Ulun; Yagmur, Erbil; Bahceci, Mustafa

    2014-08-01

    Numerous studies indicate that there might be differences in embryo growth dynamics between male and female embryos. However, current data in humans are scarce and the results are inconclusive or conflicting. This study asks whether there exist gender-specific embryo development kinetics or parameters between human male and female embryos that can be observed by time-lapse technology. Study included data from 139 consecutive cycles (177 embryos transferred, 179 sacs analysed) with positive pregnancy that resulted in 100% implantation. Single- or double-embryo transfers were performed. Cases were analysed for parameters including cleavage time points and duration in each cleavage from two cells to hatching blastocyst stages and time interval between cleavages. Morphokinetic parameters of 78 female and 60 male embryos from a total of 119 cycles (139 sacs were examined after transfer of 138 embryos) were processed for data analysis according to the gender group. A detailed analysis of the data regarding each time point or interval between consecutive events according to these groups showed them to be similar in cell division kinetics, from the early cleavage through their development to blastocyst stage. However, female embryos showed earlier cavitation than male embryos, but the results did not reach statistical significance.

  2. A time-lapse photography method for monitoring salmon (Oncorhynchus spp.) passage and abundance in streams.

    PubMed

    Deacy, William W; Leacock, William B; Eby, Lisa A; Stanford, Jack A

    2016-01-01

    Accurately estimating population sizes is often a critical component of fisheries research and management. Although there is a growing appreciation of the importance of small-scale salmon population dynamics to the stability of salmon stock-complexes, our understanding of these populations is constrained by a lack of efficient and cost-effective monitoring tools for streams. Weirs are expensive, labor intensive, and can disrupt natural fish movements. While conventional video systems avoid some of these shortcomings, they are expensive and require excessive amounts of labor to review footage for data collection. Here, we present a novel method for quantifying salmon in small streams (<15 m wide, <1 m deep) that uses both time-lapse photography and video in a model-based double sampling scheme. This method produces an escapement estimate nearly as accurate as a video-only approach, but with substantially less labor, money, and effort. It requires servicing only every 14 days, detects salmon 24 h/day, is inexpensive, and produces escapement estimates with confidence intervals. In addition to escapement estimation, we present a method for estimating in-stream salmon abundance across time, data needed by researchers interested in predator--prey interactions or nutrient subsidies. We combined daily salmon passage estimates with stream specific estimates of daily mortality developed using previously published data. To demonstrate proof of concept for these methods, we present results from two streams in southwest Kodiak Island, Alaska in which high densities of sockeye salmon spawn.

  3. Designing genetic algorithm for efficient calculation of value encoding in time-lapse gravity inversion

    NASA Astrophysics Data System (ADS)

    Wahyudi, Eko Januari

    2013-09-01

    As advancing application of soft computation technique in oil and gas industry, Genetic Algorithm (GA) also shows contribution in geophysical inverse problems in order to achieve better results and efficiency in computational process. In this paper, I would like to show the progress of my work in inverse modeling of time-lapse gravity data uses value encoding with alphabet formulation. The alphabet formulation designed to provide solution of characterization positive density change (+Δρ) and negative density change (-Δρ) respect to reference value (0 gr/cc). The inversion that utilize discrete model parameter, computed with GA as optimization algorithm. The challenge working with GA is take long time computational process, so the step in designing GA in this paper described through evaluation on GA operators performance test. The performances of several combinations of GA operators (selection, crossover, mutation, and replacement) tested with synthetic model in single-layer reservoir. Analysis on sufficient number of samples shows combination of SUS-MPCO-QSA/G-ND as the most promising results. Quantitative solution with more confidence level to characterize sharp boundary of density change zones was conducted with average calculation of sufficient model samples.

  4. Metamorphosis revealed: time-lapse three-dimensional imaging inside a living chrysalis

    PubMed Central

    Lowe, Tristan; Garwood, Russell J.; Simonsen, Thomas J.; Bradley, Robert S.; Withers, Philip J.

    2013-01-01

    Studies of model insects have greatly increased our understanding of animal development. Yet, they are limited in scope to this small pool of model species: a small number of representatives for a hyperdiverse group with highly varied developmental processes. One factor behind this narrow scope is the challenging nature of traditional methods of study, such as histology and dissection, which can preclude quantitative analysis and do not allow the development of a single individual to be followed. Here, we use high-resolution X-ray computed tomography (CT) to overcome these issues, and three-dimensionally image numerous lepidopteran pupae throughout their development. The resulting models are presented in the electronic supplementary material, as are figures and videos, documenting a single individual throughout development. They provide new insight and details of lepidopteran metamorphosis, and allow the measurement of tracheal and gut volume. Furthermore, this study demonstrates early and rapid development of the tracheae, which become visible in scans just 12 h after pupation. This suggests that there is less remodelling of the tracheal system than previously expected, and is methodologically important because the tracheal system is an often-understudied character system in development. In the future, this form of time-lapse CT-scanning could allow faster and more detailed developmental studies on a wider range of taxa than is presently possible. PMID:23676900

  5. Time lapse seismic signal analysis for Cranfield, MS, EOR and CCS site

    NASA Astrophysics Data System (ADS)

    Ditkof, J.; Caspari, E.; Pevzner, R.; Urosevic, M.; Meckel, T. A.; Hovorka, S. D.

    2012-12-01

    The Cranfield field located in Southwest Mississippi is an EOR and CCS project which has been under continuous CO2 injection by Denbury Onshore LLC since 2008. To date, more than 3 million tons of CO2 remain in the subsurface. In 2007 and 2010, 3D seismic surveys were shot and an initial 4D seismic response was characterized showing coherent amplitude anomalies in some areas which received large amounts of CO2, but not in others. Previous work used Gassmann fluid substitution at two different wells, 31F-2 observation well and the 28-1 injection well to predict a post-injection saturation curves and acoustic impedance change through the reservoir. Since this writing, a second injection well, the 44-2 well, was added to the analysis to improve the practically unconstrained inversion. The two seismic volumes were cross-equalized with an appropriate correlation coefficient through well ties. Acoustic impedance inversions were carried out on each survey resulting with higher acoustic impedance changes than predicted by Gassmann for the 28-1 and 44-2 injection wells. The time-lapse acoustic impedance however is similar to the difference calculated from a time-delay along a horizon below the reservoir.

  6. Cellular dynamics during early barley pollen embryogenesis revealed by time-lapse imaging

    PubMed Central

    Daghma, Diaa Eldin S.; Hensel, Goetz; Rutten, Twan; Melzer, Michael; Kumlehn, Jochen

    2014-01-01

    Plants display a remarkable capacity for cellular totipotency. An intriguing and useful example is that immature pollen cultured in vitro can pass through embryogenic development to form haploid or doubled haploid plants. However, a lack of understanding the initial mechanisms of pollen embryogenesis hampers the improvement and more effective and widespread employment of haploid technology in plant research and breeding. To investigate the cellular dynamics during the onset of pollen embryogenesis, we used time-lapse imaging along with transgenic barley expressing nuclear localized Green Fluorescent Protein. The results enabled us to identify nine distinct embryogenic and non-embryogenic types of pollen response to the culture conditions. Cell proliferation in embryogenic pollen normally started via a first symmetric mitosis (54.3% of pollen observed) and only rarely did so via asymmetric pollen mitosis I (4.3% of pollen observed). In the latter case, proliferation generally originated from the vegetative-like cell, albeit the division of the generative-like cell was observed in few types of pollen. Under the culture conditions used, fusion of cell nuclei was the only mechanism of genome duplication observed. PMID:25538715

  7. The feeding behaviour of an abyssal echiuran revealed by in situ time-lapse photography

    NASA Astrophysics Data System (ADS)

    Bett, B. J.; Rice, A. L.

    1993-09-01

    A time-lapse camera (IOSDL "Bathysnap") deployed on the Porcupine Abyssal Plain (48°50.1'N, 16°29.9'W, 4839 m), from 16 to 27 May 1991, recorded the sediment surface activity of what appeared to be an echiuran proboscis. The proboscis emerged from a hole formed during the period of observation to make seven sweeping, feeding excursions. These excursions, which occured over three consecutive days, averaged 73 min duration, with an average interval between excursions of 9 h, 22 min. The proboscis was not observed in the remaining eight days of the deployment. No change in the size or shape of near-by sediment mounds was observed at any time; there was no evidence of the return of material collected by the proboscis to the sediment surface. Proboscis activity appeared to occur preferentially at higher near-bottom current speeds, a possible advantage where phytodetritus is subject to redistribution by water currents (as was observed throughout the deployment). These observations are discussed in relation to the known behaviour of echiurans, particularly the mode of feeding, periodicity, quiescence, and sediment surface trace formation.

  8. Time-lapse characterization of hydrothermal seawater and microbial interactions with basaltic tephra at Surtsey Volcano

    NASA Astrophysics Data System (ADS)

    Jackson, M. D.; Gudmundsson, M. T.; Bach, W.; Cappelletti, P.; Coleman, N. J.; Ivarsson, M.; Jónasson, K.; Jørgensen, S. L.; Marteinsson, V.; McPhie, J.; Moore, J. G.; Nielson, D.; Rhodes, J. M.; Rispoli, C.; Schiffman, P.; Stefánsson, A.; Türke, A.; Vanorio, T.; Weisenberger, T. B.; White, J. D. L.; Zierenberg, R.; Zimanowski, B.

    2015-12-01

    A new International Continental Drilling Program (ICDP) project will drill through the 50-year-old edifice of Surtsey Volcano, the youngest of the Vestmannaeyjar Islands along the south coast of Iceland, to perform interdisciplinary time-lapse investigations of hydrothermal and microbial interactions with basaltic tephra. The volcano, created in 1963-1967 by submarine and subaerial basaltic eruptions, was first drilled in 1979. In October 2014, a workshop funded by the ICDP convened 24 scientists from 10 countries for 3 and a half days on Heimaey Island to develop scientific objectives, site the drill holes, and organize logistical support. Representatives of the Surtsey Research Society and Environment Agency of Iceland also participated. Scientific themes focus on further determinations of the structure and eruptive processes of the type locality of Surtseyan volcanism, descriptions of changes in fluid geochemistry and microbial colonization of the subterrestrial deposits since drilling 35 years ago, and monitoring the evolution of hydrothermal and biological processes within the tephra deposits far into the future through the installation of a Surtsey subsurface observatory. The tephra deposits provide a geologic analog for developing specialty concretes with pyroclastic rock and evaluating their long-term performance under diverse hydrothermal conditions. Abstracts of research projects are posted at http://surtsey.icdp-online.org.

  9. Time-lapse imaging of human heart motion with switched array UWB radar.

    PubMed

    Brovoll, Sverre; Berger, Tor; Paichard, Yoann; Aardal, Øyvind; Lande, Tor Sverre; Hamran, Svein-Erik

    2014-10-01

    Radar systems for detection of human heartbeats have mostly been single-channel systems with limited spatial resolution. In this paper, a radar system for ultra-wideband (UWB) imaging of the human heart is presented. To make the radar waves penetrate the human tissue the antenna is placed very close to the body. The antenna is an array with eight elements, and an antenna switch system connects the radar to the individual elements in sequence to form an image. Successive images are used to build up time-lapse movies of the beating heart. Measurements on a human test subject are presented and the heart motion is estimated at different locations inside the body. The movies show rhythmic motion consistent with the beating heart, and the location and shape of the reflections correspond well with the expected response form the heart wall. The spatial dependent heart motion is compared to ECG recordings, and it is confirmed that heartbeat modulations are seen in the radar data. This work shows that radar imaging of the human heart may provide valuable information on the mechanical movement of the heart.

  10. Determination of water saturation using gas phase partitioning tracers and time-lapse electrical conductivity measurements

    SciTech Connect

    Johnson, Timothy C.; Oostrom, Martinus; Truex, Michael J.; Thomle, Jonathan N.; Wietsma, Thomas W.

    2013-05-21

    Water saturation is an important indicator of contaminant distribution and plays a governing role in contaminant transport within the vadose zone. Understanding the water saturation distribution is critical for both remediation and contaminant flux monitoring in unsaturated environments. In this work we propose and demonstrate a method of remotely determining water saturation levels using gas phase partitioning tracers and time-lapse bulk electrical conductivity measurements. The theoretical development includes the partitioning chemistry for the tracers we demonstrate (ammonia and carbon dioxide), as well as a review of the petrophysical relationship governing how these tracers influence bulk conductivity. We also investigate methods of utilizing secondary information provided by electrical conductivity breakthrough magnitudes induced by the tracers. We test the method on clean, well characterized, intermediate-scale sand columns under controlled conditions. Results demonstrate the capability to predict partitioning coefficients and accurately monitor gas breakthrough curves along the length of the column according to the corresponding electrical conductivity response, leading to accurate water saturation estimates. This work is motivated by the need to develop effective characterization and monitoring techniques for contaminated deep vadose zone environments, and provides a proof-of-concept toward uniquely characterizing and monitoring water saturation levels at the field scale and in three-dimensions using electrical resistivity tomography.

  11. Protein kinase A catalytic subunit primed for action: Time-lapse crystallography of Michaelis complex formation

    DOE PAGES

    Das, Amit; Gerlits, Oksana O.; Parks, Jerry M.; Langan, Paul; Kovalevskyi, Andrey Y.; Heller, William T.

    2015-11-12

    The catalytic subunit of the cyclic AMP-dependent protein kinase A (PKAc) catalyzes the transfer of the γ-phosphate of bound Mg2ATP to a serine or threonine residue of a protein substrate. Here, time-lapse X-ray crystallography was used to capture a series of complexes of PKAc with an oligopeptide substrate and unreacted Mg2ATP, including the Michaelis complex, that reveal important geometric rearrangements in and near the active site preceding the phosphoryl transfer reaction. Contrary to the prevailing view, Mg2+ binds first to the M1 site as a complex with ATP and is followed by Mg2+ binding to the M2 site. Furthermore, themore » target serine hydroxyl of the peptide substrate rotates away from the active site toward the bulk solvent, which breaks the hydrogen bond with D166. In conclusion, the serine hydroxyl of the substrate rotates back toward D166 to form the Michaelis complex with the active site primed for phosphoryl transfer.« less

  12. A time-lapse photography method for monitoring salmon (Oncorhynchus spp.) passage and abundance in streams

    PubMed Central

    Leacock, William B.; Eby, Lisa A.; Stanford, Jack A.

    2016-01-01

    Accurately estimating population sizes is often a critical component of fisheries research and management. Although there is a growing appreciation of the importance of small-scale salmon population dynamics to the stability of salmon stock-complexes, our understanding of these populations is constrained by a lack of efficient and cost-effective monitoring tools for streams. Weirs are expensive, labor intensive, and can disrupt natural fish movements. While conventional video systems avoid some of these shortcomings, they are expensive and require excessive amounts of labor to review footage for data collection. Here, we present a novel method for quantifying salmon in small streams (<15 m wide, <1 m deep) that uses both time-lapse photography and video in a model-based double sampling scheme. This method produces an escapement estimate nearly as accurate as a video-only approach, but with substantially less labor, money, and effort. It requires servicing only every 14 days, detects salmon 24 h/day, is inexpensive, and produces escapement estimates with confidence intervals. In addition to escapement estimation, we present a method for estimating in-stream salmon abundance across time, data needed by researchers interested in predator--prey interactions or nutrient subsidies. We combined daily salmon passage estimates with stream specific estimates of daily mortality developed using previously published data. To demonstrate proof of concept for these methods, we present results from two streams in southwest Kodiak Island, Alaska in which high densities of sockeye salmon spawn. PMID:27326378

  13. Cell segmentation for division rate estimation in computerized video time-lapse microscopy

    NASA Astrophysics Data System (ADS)

    He, Weijun; Wang, Xiaoxu; Metaxas, Dimitris; Mathew, Robin; White, Eileen

    2007-02-01

    The automated estimation of cell division rate plays an important role in the evaluation of a gene function in high throughput biomedical research. Using Computerized Video Time-Lapse (CVTL) microcopy , it is possible to follow a large number of cells in their physiological conditions for several generations. However analysis of this large volume data is complicated due to cell to cell contacts in a high density population. We approach this problem by segmenting out cells or cell clusters through a learning method. The feature of a pixel is represented by the intensity and gradient information in a small surrounding sub-window. Curve evolution techniques are used to accurately find the cell or cell cluster boundary. With the assumption that the average cell size is the same in each frame, we can use the cell area to estimate the cell division rate. Our segmentation results are compared to manually-defined ground truth. Both recall and precision measures for segmentation accuracy are above 95%.

  14. Estimation of the path-averaged atmospheric refractive index structure constant from time-lapse imagery

    NASA Astrophysics Data System (ADS)

    Basu, Santasri; McCrae, Jack E.; Fiorino, Steven T.

    2015-05-01

    A time-lapse imaging experiment was conducted to monitor the effects of the atmosphere over some period of time. A tripod-mounted digital camera captured images of a distant building every minute. Correlation techniques were used to calculate the position shifts between the images. Two factors causing shifts between the images are: atmospheric turbulence, causing the images to move randomly and quickly, plus changes in the average refractive index gradient along the path which cause the images to move vertically, more slowly and perhaps in noticeable correlation with solar heating and other weather conditions. A technique for estimating the path-averaged C 2n from the random component of the image motion is presented here. The technique uses a derived set of weighting functions that depend on the size of the imaging aperture and the patch size in the image whose motion is being tracked. Since this technique is phase based, it can be applied to strong turbulence paths where traditional irradiance based techniques suffer from saturation effects.

  15. Early Events in Insulin Fibrillization Studied by Time-Lapse Atomic Force Microscopy

    PubMed Central

    Podestà, Alessandro; Tiana, Guido; Milani, Paolo; Manno, Mauro

    2006-01-01

    The importance of understanding the mechanism of protein aggregation into insoluble amyloid fibrils lies not only in its medical consequences, but also in its more basic properties of self-organization. The discovery that a large number of uncorrelated proteins can form, under proper conditions, structurally similar fibrils has suggested that the underlying mechanism is a general feature of polypeptide chains. In this work, we address the early events preceding amyloid fibril formation in solutions of zinc-free human insulin incubated at low pH and high temperature. Here, we show by time-lapse atomic force microscopy that a steady-state distribution of protein oligomers with a quasiexponential tail is reached within a few minutes after heating. This metastable phase lasts for a few hours, until fibrillar aggregates are observable. Although for such complex systems different aggregation mechanisms can occur simultaneously, our results indicate that the prefibrillar phase is mainly controlled by a simple coagulation-evaporation kinetic mechanism, in which concentration acts as a critical parameter. These experimental facts, along with the kinetic model used, suggest a critical role for thermal concentration fluctuations in the process of fibril nucleation. PMID:16239333

  16. Early events in insulin fibrillization studied by time-lapse atomic force microscopy.

    PubMed

    Podestà, Alessandro; Tiana, Guido; Milani, Paolo; Manno, Mauro

    2006-01-15

    The importance of understanding the mechanism of protein aggregation into insoluble amyloid fibrils lies not only in its medical consequences, but also in its more basic properties of self-organization. The discovery that a large number of uncorrelated proteins can form, under proper conditions, structurally similar fibrils has suggested that the underlying mechanism is a general feature of polypeptide chains. In this work, we address the early events preceding amyloid fibril formation in solutions of zinc-free human insulin incubated at low pH and high temperature. Here, we show by time-lapse atomic force microscopy that a steady-state distribution of protein oligomers with a quasiexponential tail is reached within a few minutes after heating. This metastable phase lasts for a few hours, until fibrillar aggregates are observable. Although for such complex systems different aggregation mechanisms can occur simultaneously, our results indicate that the prefibrillar phase is mainly controlled by a simple coagulation-evaporation kinetic mechanism, in which concentration acts as a critical parameter. These experimental facts, along with the kinetic model used, suggest a critical role for thermal concentration fluctuations in the process of fibril nucleation.

  17. Lapses in skin conductance responding across anatomical sites: Comparison of fingers, feet, forehead, and wrist.

    PubMed

    Payne, Andrew F H; Schell, Anne M; Dawson, Michael E

    2016-07-01

    The fingers are widely accepted as the gold standard for skin conductance (SC) recording, with the feet as a strong alternative. However, there are gaps in the current literature comparing these sites. There is also a great deal of interest in alternative recording sites to permit mobility, but data evaluating these are few and inconsistent. The present report compared multiple sites (fingers, abductor hallucis of the foot, arch of the foot, toes, forehead, and wrist) from 45 college student participants in a short-term sedentary laboratory setting and found large variation in both tonic and phasic SC responses, as well as crucial lapses in responding at nonpalmar sites. Across-site correlations between participants and within participants were also examined. The present data show that, in the laboratory setting employing commonly used recording techniques and stimuli, the nonpalmar sites are generally less responsive than the fingers, and the wrist in particular is the lowest in responding, whereas the toes are most similar to the fingers in responding. Within-participant correlations between the fingers and other sites were greatest for the plantar sites and least for the forehead. PMID:27015847

  18. Distortion effects in a switch array UWB radar for time-lapse imaging of human heartbeats

    NASA Astrophysics Data System (ADS)

    Brovoll, Sverre; Berger, Tor; Aardal, Åyvind; Lande, Tor S.; Hamran, Svein-Erik

    2014-05-01

    Cardiovascular diseases (CVD) are a major cause of deaths all over the world. Microwave radar can be an alternative sensor for heart diagnostics and monitoring in modern healthcare that aids early detection of CVD symptoms. In this paper measurements from a switch array radar system are presented. This UWB system operates below 3 GHz and does time-lapse imaging of the beating heart inside the human body. The array consists of eight fat dipole elements. With a switch system, every possible sequence of transmit/receive element pairs can be selected to build a radar image from the recordings. To make the radar waves penetrate the human tissue, the antenna array is placed in contact with the body. Removal of the direct signal leakage through the antennas and body surface are done by high-pass (HP) filtering of the data prior to image processing. To analyze the results, measurements of moving spheres in air and simulations are carried out. We see that removal of the direct signal introduces amplitude distortion in the images. In addition, the effect of small target motion between the collection times of data from the individual elements is analyzed. With low pulse repetition frequency (PRF) this motion will distort the image. By using data from real measurements of heart motion in simulations, we analyze how the PRF and the antenna geometry influence this distortions.

  19. Thermal erosion of a permafrost coastline: Improving process-based models using time-lapse photography

    USGS Publications Warehouse

    Wobus, C.; Anderson, R.; Overeem, I.; Matell, N.; Clow, G.; Urban, F.

    2011-01-01

    Coastal erosion rates locally exceeding 30 m y-1 have been documented along Alaska's Beaufort Sea coastline, and a number of studies suggest that these erosion rates have accelerated as a result of climate change. However, a lack of direct observational evidence has limited our progress in quantifying the specific processes that connect climate change to coastal erosion rates in the Arctic. In particular, while longer ice-free periods are likely to lead to both warmer surface waters and longer fetch, the relative roles of thermal and mechanical (wave) erosion in driving coastal retreat have not been comprehensively quantified. We focus on a permafrost coastline in the northern National Petroleum Reserve-Alaska (NPR-A), where coastal erosion rates have averaged 10-15 m y-1 over two years of direct monitoring. We take advantage of these extraordinary rates of coastal erosion to observe and quantify coastal erosion directly via time-lapse photography in combination with meteorological observations. Our observations indicate that the erosion of these bluffs is largely thermally driven, but that surface winds play a crucial role in exposing the frozen bluffs to the radiatively warmed seawater that drives melting of interstitial ice. To first order, erosion in this setting can be modeled using formulations developed to describe iceberg deterioration in the open ocean. These simple models provide a conceptual framework for evaluating how climate-induced changes in thermal and wave energy might influence future erosion rates in this setting.

  20. Time-lapse crosswell seismic and VSP monitoring of injected CO2 ina brine aquifer

    SciTech Connect

    Daley, Thomas M.; Myer, Larry R.; Peterson, J.E.; Majer, E.L.; Hoversten,G.M.

    2006-05-30

    Seismic surveys successfully imaged a small scale C02injection (1,600 tons) conducted in a brine aquifer of the Frio Formationnear Houston, Texas. These time-lapse bore-hole seismic surveys,crosswell and vertical seismic profile (VSP), were acquired to monitorthe C02 distribution using two boreholes (the new injection well and apre-existing well used for monitoring) which are 30 m apart at a depth of1500 m. The crosswell survey provided a high-resolution image of the C02distribution between the wells via tomographic imaging of the P-wavevelocity decrease (up to 500 mls). The simultaneously acquired S-wavetomography showed little change in S-wave velocity, as expected for fluidsubstitution. A rock physics model was used to estimate C02 saturationsof 10-20 percent from the P-wave velocity change. The VSP survey resolveda large (-70 percent) change in reflection amplitude for the Friohorizon. This C02 induced reflection amplitude change allowed estimationof the C02 extent beyond the monitor well and on 3 azimuths. The VSPresult is compared with numerical modeling of C02 saturations and isseismically modeled using the velocity change estimated in the crosswellsurvey.

  1. Imaging Rainfall Infiltration Processes with the Time-Lapse Electrical Resistivity Imaging Method

    NASA Astrophysics Data System (ADS)

    Zhang, Gang; Zhang, Gui-Bin; Chen, Chien-chih; Chang, Ping-Yu; Wang, Tzu-Pin; Yen, Horng-Yuan; Dong, Jia-Jyun; Ni, Chuen-Fa; Chen, Su-Chin; Chen, Chao-Wei; Jia, Zheng-yuan

    2016-06-01

    Electrical Resistivity Imaging (ERI) was carried out continuously for 10 days to map the subsurface resistivity distribution along a potentially hazardous hillslope at the Jieshou Junior High School in Taoyuan, Taiwan. The reliability of the inverted resistivity structures down to about 25 m depth was examined with synthetic modeling using the same electrode arrangements installed on land surface as in field surveys, together with a DOI (depth-of-investigation) index calculated from the ERI data. The subsurface resistivity distribution is consistent with results from well logging. These ERI recordings were taken daily and provided highly resolved imagery of the resistivity distribution underground and illustrated the dynamical fluid-flow behavior due to heavy rainfall infiltration. Using Archie's law, the resistivity distribution was transformed into a map of relative water saturation (RWS), which is strongly correlated with the rainfall infiltration process. We then found that the averaged RWS is significantly correlated with daily precipitation. Our observations indicate that time-lapse ERI is effective in monitoring subterraneous rainfall infiltration; moreover, the preferential flow paths can be delineated according to the changes in averaged RWS derived from the ERI data.

  2. Protein kinase A catalytic subunit primed for action: Time-lapse crystallography of Michaelis complex formation

    SciTech Connect

    Das, Amit; Gerlits, Oksana O.; Parks, Jerry M.; Langan, Paul; Kovalevskyi, Andrey Y.; Heller, William T.

    2015-11-12

    The catalytic subunit of the cyclic AMP-dependent protein kinase A (PKAc) catalyzes the transfer of the γ-phosphate of bound Mg2ATP to a serine or threonine residue of a protein substrate. Here, time-lapse X-ray crystallography was used to capture a series of complexes of PKAc with an oligopeptide substrate and unreacted Mg2ATP, including the Michaelis complex, that reveal important geometric rearrangements in and near the active site preceding the phosphoryl transfer reaction. Contrary to the prevailing view, Mg2+ binds first to the M1 site as a complex with ATP and is followed by Mg2+ binding to the M2 site. Furthermore, the target serine hydroxyl of the peptide substrate rotates away from the active site toward the bulk solvent, which breaks the hydrogen bond with D166. In conclusion, the serine hydroxyl of the substrate rotates back toward D166 to form the Michaelis complex with the active site primed for phosphoryl transfer.

  3. Properties of African squall lines inferred from time-lapse satellite imagery

    NASA Technical Reports Server (NTRS)

    Fortune, M.

    1980-01-01

    Analysis of 48 h of time-lapse satellite imagery of a family of squall lines in Africa links the phenomena with a characteristic cloud cluster and with a wind field perturbation which is enhanced in passing through an African easterly wave trough. A thin 'arc line' of low-level developing cumulus, a salient feature of the squall lines on the imagery, is shown to occur at the front boundary of the mesoscale/convective scale subsidence. Analysis of the wind field indicates that a squall line is associated with a vorticity center in the mid-level easterly flow which accompanies the mesoscale subsidence which, in turn, contributes to further forced ascent of subcloud air along the front of the squall line into convective towers which merge into an extensive anvil. The squall lines evolved through a life cycle of 6 to 12 h while the larger cloud cluster and wind perturbation lasted over 48 h. The magnitude of the vertical mass exchange suggests that squall-line families contribute significantly to the tropical energy balance.

  4. Rapid antimicrobial susceptibility testing of clinical isolates by digital time-lapse microscopy.

    PubMed

    Fredborg, M; Rosenvinge, F S; Spillum, E; Kroghsbo, S; Wang, M; Sondergaard, T E

    2015-12-01

    Rapid antimicrobial susceptibility testing (AST) is essential for early and appropriate therapy. Methods with short detection time enabling same-day treatment optimisation are highly favourable. In this study, we evaluated the potential of a digital time-lapse microscope system, the oCelloScope system, to perform rapid AST. The oCelloScope system demonstrated a very high accuracy (96% overall agreement) when determining the resistance profiles of four reference strains, nine clinical isolates, including multi-drug-resistant isolates, and three positive blood cultures. AST of clinical isolates (168 antimicrobial agent-organism combinations) demonstrated 3.6% minor, no major and 1.2% very major errors of the oCelloScope system compared to conventional susceptibility testing, as well as a rapid and correct phenotypic detection of strains with methicillin-resistant Staphylococcus aureus (MRSA) and extended-spectrum β-lactamase (ESBL) profiles. The net average time-to-result was 108 min, with 95% of the results being available within 180 min. In conclusion, this study strongly indicates that the oCelloScope system holds considerable potential as an accurate and sensitive AST method with short time-to-result, enabling same-day targeted antimicrobial therapy, facilitating antibiotic stewardship and better patient management. A full-scale validation of the oCelloScope system including more isolates is necessary to assess the impact of using it for AST. PMID:26407621

  5. Time-lapse ERT for the monitoring of soil-plant interactions in the root zone

    NASA Astrophysics Data System (ADS)

    Cassiani, G.; Boaga, J.; Rossi, M.; D'Alpaos, A.; Fadda, G.; Putti, M.; Marani, M.

    2011-12-01

    The application of time-lapse non invasive 3D micro-scale electrical resistivity tomography (ERT) has been proven to be an efficient tool to monitor the soil-plant interactions and particularly the root zone activity. This information can support water balance modeling in the upper subsoil critical zone. Here we present the results of two field experiments in very different environments: the case of a single apple tree in an orchard located in the Trentino region (Northern Italy), and the case of salt-marshes plants in the Venice Lagoon. The micro-scale ERT apparatus consists of buried electrodes installed on micro boreholes, plus mini-electrodes on the ground surface. We collected repeated ERT, TDR and tensiometer data. For the apple orchard site test we adopted controlled irrigation tests in different seasons, while in the lagoon salt-marshes we monitored the root-plant activity during tidal flooding. The results demonstrate that micro-scale ERT is a very effective tool to characterize subsoil conditions and monitor root zone activities, especially in terms of root zone suction regions. Micro-scale ERT can detect the main suction zones caused by the tree root activity, as demonstrated in the case of the apple orchard, while ERT and moisture measurements in the lagoon environment show a high resistivity suction layer located at root depth even during marsh flooding. Both observations will be important pieces of information for the comprehension of relevant eco- hydrological dynamics.

  6. Time-lapse ERT for the monitoring of soil-plant interactions in the root zone

    NASA Astrophysics Data System (ADS)

    Cassiani, G.; Boaga, J.; Rossi, M.; D'Alpaos, A.; Fadda, G.; Putti, M.; Marani, M.

    2013-12-01

    The application of time-lapse non invasive 3D micro-scale electrical resistivity tomography (ERT) has been proven to be an efficient tool to monitor the soil-plant interactions and particularly the root zone activity. This information can support water balance modeling in the upper subsoil critical zone. Here we present the results of two field experiments in very different environments: the case of a single apple tree in an orchard located in the Trentino region (Northern Italy), and the case of salt-marshes plants in the Venice Lagoon. The micro-scale ERT apparatus consists of buried electrodes installed on micro boreholes, plus mini-electrodes on the ground surface. We collected repeated ERT, TDR and tensiometer data. For the apple orchard site test we adopted controlled irrigation tests in different seasons, while in the lagoon salt-marshes we monitored the root-plant activity during tidal flooding. The results demonstrate that micro-scale ERT is a very effective tool to characterize subsoil conditions and monitor root zone activities, especially in terms of root zone suction regions. Micro-scale ERT can detect the main suction zones caused by the tree root activity, as demonstrated in the case of the apple orchard, while ERT and moisture measurements in the lagoon environment show a high resistivity suction layer located at root depth even during marsh flooding. Both observations will be important pieces of information for the comprehension of relevant eco- hydrological dynamics.

  7. Attentional Lapses of Adults with Attention Deficit Hyperactivity Disorder in Tasks of Sustained Attention.

    PubMed

    Gmehlin, Dennis; Fuermaier, Anselm B M; Walther, Stephan; Tucha, Lara; Koerts, Janneke; Lange, Klaus W; Tucha, Oliver; Weisbrod, Matthias; Aschenbrenner, Steffen

    2016-06-01

    Adults with attention deficit hyperactivity disorder (ADHD) show attentional dysfunction such as distractibility and mind-wandering, especially in lengthy tasks. However, fundamentals of dysfunction are ambiguous and relationships of neuropsychological test parameters with self-report measures of ADHD symptoms are marginal. We hypothesize that basic deficits in sustaining attention explain more complex attentional dysfunction in persons with ADHD and relate to ADHD symptoms. Attentional function was analyzed by computing ex-Gaussian parameters for 3 time Blocks in a 20 min test of sustained alertness. Changes in performance across these blocks were analyzed by comparing adult persons with ADHD (n = 24) with healthy matched controls (n = 24) and correlated with neuropsychological measures of selective and divided attention as well as self-report measures of ADHD symptoms. We found a significantly steeper increase in the number of slow responses (ex-Gaussian parameter τ) in persons with ADHD with time on task in basic sustained alertness. They also performed significantly worse in tasks of sustained selective and divided attention. However, after controlling for an increase in τ during the alertness task, significant differences between groups disappeared for divided and partly selective attention. Increases in τ in the sustained alertness task correlated significantly with self-report measures of ADHD symptoms. Our results provide evidence that very basic deficits in sustaining attention in adults with ADHD are related to infrequent slow responses (=attentional lapses), with changes over time being relevant for more complex attentional function and experienced ADHD symptoms in everyday life. PMID:27193369

  8. Detecting mitoses in time-lapse images of embryonic epithelia using intensity analysis.

    PubMed

    Siva, Parthipan; Brodland, G Wayne; Clausi, David

    2009-12-01

    Although the frequency and orientation of mitoses can significantly affect the mechanics of early embryo development, these data have not been available due to a shortage of suitable automated techniques. Fluorescence imaging, though popular, requires biochemical intervention and is not always possible or desirable. Here, a new technique that takes advantage of a localized intensity change that occurs in bright field images is used to identify mitoses. The algorithm involves mapping a deformable, sub-cellular triangular mesh from one time-lapse image to the next so that corresponding regions can be identified. Triangles in the mesh that undergo darkening of a sufficient degree over a period consistent with mitosis are flagged. Mitoses are assumed to occur along the short axis of elliptical areas fit to suitably sized clusters of flagged triangles. The algorithm is less complex than previous approaches and it has strong discrimination characteristics. When applied to 15 image sets from neurulation-stage axolotl (Ambystoma mexicanum) embryos, it was able to correctly detect 86% of the manually identified mitoses, had less than 5% false positives and produced average angular errors of only 15 degrees . The new algorithm is simpler to implement than those previously available, is substantially more accurate, and provides data that is important for understanding the mechanics of morphogenetic movements. PMID:19757061

  9. Monitoring water flows with time-lapse Electrical Resistivity Tomography on the Super-Sauze landslide

    NASA Astrophysics Data System (ADS)

    Gance, J.; Sailhac, P.; Malet, J.-P.; Grandjean, G.; Supper, R.; Jochum, B.; Ottowitz, D.

    2012-04-01

    This work presents results of a permanent hydro-geophysical monitoring of an active landslide developed in clay-shales. Hydrology has been proved to be a major factor controlling the Super-Sauze earthflow behavior, but it knowledge still limited mainly because of the importance of spatial heterogeneities. The geometry of the bedrock creates internal crests and gullies that can guide waterflows or create a lock and engender an excess of pore water pressure; the soil surface characteristics plays also a large role in the surface hydraulic conductivity, and therefore, on the infiltration pattern. To understand in detail these processes, it is therefore important to monitor spatially at large scale (with high resolution) those phenomena and to overcome the monitoring difficulties inherent to a fast-moving clayey earthflow. The objectives of the survey are to identify and characterize spatially and temporarily the water flow circulation within the landslide body over a period of one year. The studied profile measures 114 m long and is surveyed with 93 electrodes spaced from 0.5, 1 or 2 meter according the soil surface cracking. Four resistivity datasets of 4300 measurements are acquired each day using a gradient array since May 2011. The monitoring is performed with the GEOMON4D system, developed by the Geological Survey of Austria. To facilitate the interpretation, humidity, conductivity, temperature, and piezometer sensors are placed along the profile. Two dGPS antenna placed upstream and downstream the profile allow to correlate the results with soil displacement. Lefranc tests and granulometry results realized on several samples have shown the important heterogeneities of the near surface. The objective of this work is to present the data processing strategy for the analysis of long periods time-lapse ERT survey of natural rain events taking into account changes through time of the position of the electrodes, changes in the soil surface state and important changes

  10. Sample Drift Correction Following 4D Confocal Time-lapse Imaging

    PubMed Central

    Parslow, Adam; Cardona, Albert; Bryson-Richardson, Robert J.

    2014-01-01

    The generation of four-dimensional (4D) confocal datasets; consisting of 3D image sequences over time; provides an excellent methodology to capture cellular behaviors involved in developmental processes.  The ability to track and follow cell movements is limited by sample movements that occur due to drift of the sample or, in some cases, growth during image acquisition. Tracking cells in datasets affected by drift and/or growth will incorporate these movements into any analysis of cell position. This may result in the apparent movement of static structures within the sample. Therefore prior to cell tracking, any sample drift should be corrected. Using the open source Fiji distribution 1  of ImageJ 2,3 and the incorporated LOCI tools 4, we developed the Correct 3D drift plug-in to remove erroneous sample movement in confocal datasets. This protocol effectively compensates for sample translation or alterations in focal position by utilizing phase correlation to register each time-point of a four-dimensional confocal datasets while maintaining the ability to visualize and measure cell movements over extended time-lapse experiments. PMID:24747942

  11. Deciphering the Receptor Repertoire Encoding Specific Odorants by Time-Lapse Single-Cell Array Cytometry.

    PubMed

    Suzuki, Masato; Yoshimoto, Nobuo; Shimono, Ken; Kuroda, Shun'ichi

    2016-01-01

    Mammals can recognize a vast number of odorants by using olfactory receptors (ORs) known as G protein-coupled receptors. The OR gene family is one of the most diverse gene families in mammalian genomes. Because of the vast combinations of ORs and odorants, few ORs have thus far been linked to specific odorants. Here, we established a functional screening method for OR genes by using a microchamber array containing >5,400 single olfactory epithelium-derived cells from mice applied to time-lapse single-cell array cytometry. This method facilitated the prompt isolation of single olfactory sensory neurons (OSNs) responding to the odorant of interest. Subsequent single-cell RT-PCR allowed us to isolate the genes encoding respective ORs. By using volatile molecules recognized as biomarkers for lung cancers, this method could deorphanize ORs and thereby reconstitute the OR-mediated signaling cascade in HEK293T cells. Thus, our system could be applied to identify any receptor by using specific ligands in the fields of physiopathology and pharmacology. PMID:26832639

  12. Time-lapse microscopy studies of bystander effects induced by photosensitization

    NASA Astrophysics Data System (ADS)

    Chen, Yin-Chu; Redmond, Robert W.

    2006-02-01

    Reactive oxygen species (ROS) are involved in the pathogenesis of many critical diseases and are also utilized as cytotoxic agents in a variety of treatments for eradication of diseased tissue, including cancer. Oxidative stress ensues when the level of ROS in a system exceeds the antioxidant capacity. Oxidative stress can have local (direct) and long-range (bystander) effects in cells and tissue and this research was carried out to determine the spatial and temporal nature of the photosensitized bystander effect using time-lapse fluorescence microscopy. By initiating photosensitization in only a portion of the microscopic imaging field it was possible to differentiate direct from bystander effects in EMT-6 murine breast cancer cells in 6-well plates. Elevated ROS levels are seen immediately following photodynamic treatment in direct cells with a delayed increase in oxidative stress observed in bystander cells. Cytotoxicity is also seen at earlier times in direct cells and occurs in bystander cells in a delayed fashion. These studies confirm the existence of a bystander effect following photosensitization and implicate mediators capable of diffusing in an intercellular manner from directly photosensitized cells to bystander cells and also implicate increased oxidative stress as a mechanistic factor in generating damage in bystander cells.

  13. Magnetic resonance imaging (MRI) of a cookie in comparison with time-lapse photographic analysis (TLPA) during baking process.

    PubMed

    Hong, S W; Yan, Z Y; Otterburn, M S; McCarthy, M J

    1996-01-01

    Magnetic Resonance Imaging (MRI) has been used to study the baking of a cookie. The structural and dynamic changes occurring during baking have been monitored, including changes in the internal moisture saturations and distribution. The images reveal the moisture distribution is initially uniform, and during baking a gradient in moisture develops from the interior to the edge. Changes in physical dimensions calculated from the data are consistent with those obtained from time-lapsed photography.

  14. Time-lapse three-dimensional inversion of complex conductivity data using an active time constrained (ATC) approach

    USGS Publications Warehouse

    Karaoulis, M.; Revil, A.; Werkema, D.D.; Minsley, B.J.; Woodruff, W.F.; Kemna, A.

    2011-01-01

    Induced polarization (more precisely the magnitude and phase of impedance of the subsurface) is measured using a network of electrodes located at the ground surface or in boreholes. This method yields important information related to the distribution of permeability and contaminants in the shallow subsurface. We propose a new time-lapse 3-D modelling and inversion algorithm to image the evolution of complex conductivity over time. We discretize the subsurface using hexahedron cells. Each cell is assigned a complex resistivity or conductivity value. Using the finite-element approach, we model the in-phase and out-of-phase (quadrature) electrical potentials on the 3-D grid, which are then transformed into apparent complex resistivity. Inhomogeneous Dirichlet boundary conditions are used at the boundary of the domain. The calculation of the Jacobian matrix is based on the principles of reciprocity. The goal of time-lapse inversion is to determine the change in the complex resistivity of each cell of the spatial grid as a function of time. Each model along the time axis is called a 'reference space model'. This approach can be simplified into an inverse problem looking for the optimum of several reference space models using the approximation that the material properties vary linearly in time between two subsequent reference models. Regularizations in both space domain and time domain reduce inversion artefacts and improve the stability of the inversion problem. In addition, the use of the time-lapse equations allows the simultaneous inversion of data obtained at different times in just one inversion step (4-D inversion). The advantages of this new inversion algorithm are demonstrated on synthetic time-lapse data resulting from the simulation of a salt tracer test in a heterogeneous random material described by an anisotropic semi-variogram. ?? 2011 The Authors Geophysical Journal International ?? 2011 RAS.

  15. An instrumented sample holder for time-lapse micro-tomography measurements of snow under advective airflow

    NASA Astrophysics Data System (ADS)

    Ebner, P. P.; Grimm, S. A.; Schneebeli, M.; Steinfeld, A.

    2014-06-01

    An instrumented sample holder was developed for time-lapse micro-tomography of snow samples to enable in-situ nondestructive spatial and temporal measurements under controlled advective airflows, temperature gradients, and air humidities. The design was aided by computational fluid dynamics simulations to evaluate the airflow uniformity across the snow sample. Morphological and mass transport properties were evaluated during a 4 day test run. This instrument allows the experimental characterization of metamorphism of snow undergoing structural changes with time.

  16. A Versatile Time-Lapse Camera System Developed by the Hawaiian Volcano Observatory for Use at Kilauea Volcano, Hawaii

    USGS Publications Warehouse

    Orr, Tim R.; Hoblitt, Richard P.

    2008-01-01

    Volcanoes can be difficult to study up close. Because it may be days, weeks, or even years between important events, direct observation is often impractical. In addition, volcanoes are often inaccessible due to their remote location and (or) harsh environmental conditions. An eruption adds another level of complexity to what already may be a difficult and dangerous situation. For these reasons, scientists at the U.S. Geological Survey (USGS) Hawaiian Volcano Observatory (HVO) have, for years, built camera systems to act as surrogate eyes. With the recent advances in digital-camera technology, these eyes are rapidly improving. One type of photographic monitoring involves the use of near-real-time network-enabled cameras installed at permanent sites (Hoblitt and others, in press). Time-lapse camera-systems, on the other hand, provide an inexpensive, easily transportable monitoring option that offers more versatility in site location. While time-lapse systems lack near-real-time capability, they provide higher image resolution and can be rapidly deployed in areas where the use of sophisticated telemetry required by the networked cameras systems is not practical. This report describes the latest generation (as of 2008) time-lapse camera system used by HVO for photograph acquisition in remote and hazardous sites on Kilauea Volcano.

  17. Time-Lapse Seismic Tomography and Electrical Resistivity Mapping of a Small Embankment Dam with Possible Zones of Weakness

    NASA Astrophysics Data System (ADS)

    Wodajo, L. T.; Hickey, C. J.; Song, C. R.

    2013-12-01

    Earthen dam or levee failure can occur with little to no warning. Internal problems such as seepage and piping are among the major causes of failure in earthen embankment dams and levees. Identifying and mitigating these problems requires a cost effective and non-invasive method of investigating these critical structures. This study focuses on the early detection of internal problems such as seepage and piping using time lapse seismic refraction tomography (SRT) and electrical resistivity tomography (ERT). For this study, two quarter scale model dams were built at the USDA-ARS Hydraulic Engineering Research Unit in Stillwater, OK. These dams were constructed with two internal compromised zones that would be susceptible to seepage and piping. The zones consist of a sandy region and a region compacted at lower moisture content. Time lapse seismic refraction and electrical resistivity measurements were conducted over a course of two years to monitor changes in the internal structure of the model dams due to seasonal changes, cyclic loadings and internal erosion failure. The results will provide an insight on how compromised zones due to seepage and piping can be identified at an early stage using both SRT and ERT time-lapse measurements and how joint interpretation of these two methods helps in closely identifying what attributed to the compromised zone. [This research was funded by the department of Homeland Security- sponsored Southeast Region Research Initiative (SERRI) at the Department of Energy's Oak Ridge National Laboratory.

  18. puffMarker: A Multi-Sensor Approach for Pinpointing the Timing of First Lapse in Smoking Cessation

    PubMed Central

    Saleheen, Nazir; Ali, Amin Ahsan; Hossain, Syed Monowar; Sarker, Hillol; Chatterjee, Soujanya; Marlin, Benjamin; Ertin, Emre; al’Absi, Mustafa; Kumar, Santosh

    2015-01-01

    Recent researches have demonstrated the feasibility of detecting smoking from wearable sensors, but their performance on real-life smoking lapse detection is unknown. In this paper, we propose a new model and evaluate its performance on 61 newly abstinent smokers for detecting a first lapse. We use two wearable sensors — breathing pattern from respiration and arm movements from 6-axis inertial sensors worn on wrists. In 10-fold cross-validation on 40 hours of training data from 6 daily smokers, our model achieves a recall rate of 96.9%, for a false positive rate of 1.1%. When our model is applied to 3 days of post-quit data from 32 lapsers, it correctly pinpoints the timing of first lapse in 28 participants. Only 2 false episodes are detected on 20 abstinent days of these participants. When tested on 84 abstinent days from 28 abstainers, the false episode per day is limited to 1/6. PMID:26543927

  19. Lapse time and frequency-dependent attenuation of coda waves in the Zagros continental collision zone in Southwestern Iran

    NASA Astrophysics Data System (ADS)

    Rahimi, H.; Hamzehloo, H.

    2008-06-01

    The coda Q, Qc, were estimated for the Zagros continental collision zone in southwestern Iran by analyzing the coda waves of 51 local earthquakes recorded on the three stations of the Iranian National Seismic Network (INSN) with magnitudes of between 3.1 and 4.9 recorded in the region during March and April 2006. Most of the analyzed events are foreshocks and aftershocks of the Darb-e-Astane earthquake which occurred on 31 March 2006 with a magnitude of 6.1 (IIEES). The earthquakes had an epicentral distance of between 120 and 200 km and a focal depth of about 18 km. The Qc values were computed at nine central frequencies of 1.5, 2.0, 3.0, 4.0, 6.0, 8.0, 12.0, 16.0 and 20.0 Hz through eight lapse time windows from 25 to 60 s starting at double the time of the primary S-wave from the origin time using the time-domain coda-decay method of a single backscattering model. In this study the collected data were compared between the events that occurred before and after the main event (foreshocks and aftershocks). The analysis showed a significant variation in the value of coda, Q, for the study region in different lapse times and frequencies. The variation of the quality factor, Qc, before and after the main event was estimated at different lapse time windows to observe its effect with depth. The estimated average frequency-dependent relation of Qc for foreshocks varies from Qc = (144 ± 24)f(0.42 ± 0.23) at 25 s to Qc = (85 ± 10)f(0.92 ± 0.11) at 60 s lapse window time length, respectively. For aftershocks, it varies from Qc = (121 ± 55)f(0.97 ± 0.26) at 25 s to Qc = (212 ± 59)f(0.82 ± 0.15) at 60 s. The averages of Qc in all stations and lapse times window are obtained as Qc = 99f0.84 and Qc = 178f0.86 for foreshocks and aftershocks, respectively. The Q frequency relationship for foreshocks is similar to that for the South Carolina, Koyna, western Anatolia and Aleutian earthquakes, whereas for aftershocks it is similar to the Kumaun, NW Himalaya and Parkfield

  20. Uncertainties in rock pore compressibility and effects on time lapse seismic modeling - An application to Norne field

    NASA Astrophysics Data System (ADS)

    Suman, A.; Mukerji, T.

    2009-12-01

    Time lapse seismic has evolved as an important diagnostic tool in efficient reservoir characterization and monitoring. A typical step is modeling of seismic velocities, which can provide information on variation of pore pressure and saturation inside the reservoir. Using the data of Norne field, we have made a rock physics model and shown how uncertainties in rock pore compressibility (Cpp) can cause pitfalls in modeling of seismic velocities and associated time lapse seismic signatures. We derived pore compressibilities from well logs and used different pore compressibility for different zones. We start with the rock physics modeling of Norne field based on the well log data. We then present examples of sensitivity analyses on rock pore compressibility using flow simulation and velocity modeling based on the Norne field dataset. The Norne field is located in the southern part of the Nordland II area in the Norwegian Sea. It has 29 producer and 10 injector wells. The rocks within the Norne reservoir are of Late Triassic to Middle Jurassic age. The geological model consists of five reservoir zones. They are Garn, Not, Ile, Tofte and Tilje. Well logs of nine different wells have been considered for this study. These logs consist of porosity, volume of shale, saturations, sonic log and density. Well log data are analyzed for relationships among Vp, Vs, porosity, density and lithology. The basis of our approach is to relate elastic moduli and porosity near the well (based on the well log data) and use this relation to populate away from the well. Dvorkin’s unconsolidated sand model is used which relates the elastic moduli of high porosity sediments to porosity, mineralogy and effective pressure. Hertz-Mindlin contact theory is used to calculate the effective bulk and shear moduli of the rock frame at the critical porosity. Bulk and shear moduli of the rock frame having porosity below critical are calculated using the modified lower Hashin-Shtrikman bound. There are

  1. Oil Sands Characteristics and Time-Lapse and P-SV Seismic Steam Monitoring, Athabasca, Canada

    NASA Astrophysics Data System (ADS)

    Takahashi, A.; Nakayama, T.; Kashihara, K.; Skinner, L.; Kato, A.

    2008-12-01

    -injection. The differences of the seismic responses between the time-lapse seismic volumes can be quantitatively explained by P-wave velocity decrease of the oil sands layers due to steam-injection. In addition, the data suggests that a larger area would be influenced by pressure than temperature. We calculate several seismic attributes such as RMS values of amplitude difference, maximum cross correlations, and interval velocity differences. These attributes are integrated by using self-organization maps (SOM) and K-means methods. By this analysis, we are able to distinguish areas of steam chamber growth from transitional and non-affected areas. In addition, 3D P-SV converted-wave processing and analysis are applied on the second 3D data set (recorded with three-component digital sensor). Low Vp/Vs values in the P-SV volume show areas of steam chamber development, and high Vp/Vs values indicate transitional zones. Our analysis of both time-lapse 3D seismic and 3D P-SV data along with the rock physics model can be used to monitor qualitatively and quantitatively the rock property changes of the inter-well reservoir sands in the field.

  2. Overland flow dynamics through visual observation using time-lapse photographs

    NASA Astrophysics Data System (ADS)

    Silasari, Rasmiaditya; Blöschl, Günter

    2016-04-01

    Overland flow process on agricultural land is important to be investigated as it affects the stream discharge and water quality assessment. During rainfall events the formation of overland flow may happen through different processes (i.e. Hortonian or saturation excess overland flow) based on the governing soil hydraulic parameters (i.e. soil infiltration rate, soil water capacity). The dynamics of the soil water state and the processes will affect the surface runoff response which can be analyzed visually by observing the saturation patterns with a camera. Although visual observation was proven useful in laboratory experiments, the technique is not yet assessed for natural rainfall events. The aim of this work is to explore the use of time-lapse photographs of naturally occurring-saturation patterns in understanding the threshold processes of overland flow generation. The image processing produces orthographic projection of the saturation patterns which will be used to assess the dynamics of overland flow formation in relation with soil moisture state and rainfall magnitude. The camera observation was performed at Hydrological Open Air Laboratory (HOAL) catchment at Petzenkirchen, Lower Austria. The catchment covers an area of 66 ha dominated with agricultural land (87%). The mean annual precipitation and mean annual flow at catchment outlet are 750 mm and 4 l/s, respectively. The camera was set to observe the overland flow along a thalweg on an arable field which was drained in 1950s and has advantages of: (1) representing agricultural land as the dominant part of the catchment, (2) adjacent to the stream with clear visibility (no obstructing objects, such as trees), (3) drained area provides extra cases in understanding the response of tile drain outflow to overland flow formation and vice versa, and (4) in the vicinity of TDT soil moisture stations. The camera takes a picture with 1280 x 720 pixels resolution every minute and sends it directly in a PC via fiber

  3. ENVIRONMENTAL MONITORING OF LEAKS USING TIME LAPSED LONG ELECTRODE ELECTRICAL RESISTIVITY

    SciTech Connect

    MYERS DA; RUCKER DF; FINK JB; LOKE MH

    2009-12-16

    Highly industrialized areas pose challenges for surface electrical resistivity characterization due to metallic infrastructure. The infrastructure is typically more conductive than the desired targets and will mask the deeper subsurface information. These challenges may be minimized if steel-cased wells are used as long electrodes in the area near the target. We demonstrate a method of using long electrodes to electrically monitor a simulated leak from an underground storage tank with both synthetic examples and a field demonstration. The synthetic examples place a simple target of varying electrical properties beneath a very low resistivity layer. The layer is meant to replicate the effects of infrastructure. Both surface and long electrodes are tested on the synthetic domain. The leak demonstration for the field experiment is simulated by injecting a high conductivity fluid in a perforated well within the S tank farm at Hanford, and the resistivity measurements are made before and after the leak test. All data are processed in four dimensions, where a regularization procedure is applied in both the time and space domains. The synthetic test case shows that the long electrode ERM could detect relative changes in resistivity that are commensurate with the differing target properties. The surface electrodes, on the other hand, had a more difficult time matching the original target's footprint. The field results shows a lowered resistivity feature develop south of the injection site after cessation of the injections. The time lapsed regularization parameter has a strong influence on the differences in inverted resistivity between the pre and post injection datasets, but the interpretation of the target is consistent across all values of the parameter. The long electrode ERM method may provide a tool for near real-time monitoring of leaking underground storage tanks.

  4. Visualizing Hyporheic Flow Paths in Three Dimensions Using Time-Lapse Electrical Resistivity Tomography

    NASA Astrophysics Data System (ADS)

    Kohler, B.; Hall, R. O., Jr.; Carr, B.

    2015-12-01

    The hyporheic zone, the region underneath/surrounding a stream where surface and subsurface waters - and subsequently solutes - are exchanged and interact, is important for many biogeochemical, hydrological, and ecological processes. However, it has remained difficult for researchers to sufficiently describe solute transport within the hyporheic zone, due, in part, to the great degree of heterogeneity of the subsurface. Thus, more direct and invasive sampling techniques are limited in their usefulness. We used an indirect approach for measuring the hyporheic zone, employing 3D time-lapse electrical resistivity tomography (ERT), with a pole-dipole configuration, downstream of a constant-rate addition of an electrically conductive salt tracer (Cl-) as a solution via a high-precision peristaltic pump. This method allowed us to measure the extent of subsurface dynamics of streams in Wyoming's Laramie and Snowy Range mountains, as it yields a three-dimensional view of solute transport and exchange within the hyporheic zone. We found that the physical size of the hyporheic zone and the rate of exchange between the hyporheic and surface waters, as estimated from 3D ERT, are largely related to sediment properties (i.e. grain size distribution) and the extent of tailing of the solute's breakthrough curve (length of time for the solute to flush from the subsurface post cessation of the pump upstream). Coarser sediments with a relatively large porosity, such as gravels and sands, allowed for more subsurface exchange, and larger flow paths, than finer sediments with tighter packing structures, such as clays. Stream reaches that showed a higher degree of tailing in the breakthrough curve, traditionally implying a large transient storage zone, had larger and more active hyporheic zones as measured by 3D ERT. We therefore believe further investigations with 3D ERT will better our understanding of hyporheic exchange and stream solute transport.

  5. Time-Lapse Retinal Ganglion Cell Dendritic Field Degeneration Imaged in Organotypic Retinal Explant Culture

    PubMed Central

    Johnson, Thomas V.; Oglesby, Ericka N.; Steinhart, Matthew R.; Cone-Kimball, Elizabeth; Jefferys, Joan; Quigley, Harry A.

    2016-01-01

    Purpose To develop an ex vivo organotypic retinal explant culture system suitable for multiple time-point imaging of retinal ganglion cell (RGC) dendritic arbors over a period of 1 week, and capable of detecting dendrite neuroprotection conferred by experimental treatments. Methods Thy1-YFP mouse retinas were explanted and maintained in organotypic culture. Retinal ganglion cell dendritic arbors were imaged repeatedly using confocal laser scanning microscopy. Maximal projection z-stacks were traced by two masked investigators and dendritic fields were analyzed for characteristics including branch number, size, and complexity. One group of explants was treated with brain derived neurotrophic factor (BDNF) and ciliary neurotrophic factor (CNTF) added to the culture media. Changes in individual dendritic fields over time were detected using pair-wise comparison testing. Results Retinal ganglion cells in mouse retinal explant culture began to degenerate after 3 days with 52.4% surviving at 7 days. Dendritic field parameters showed minimal change over 8 hours in culture. Intra- and interobserver measurements of dendrite characteristics were strongly correlated (Spearman rank correlations consistently > 0.80). Statistically significant (P < 0.001) dendritic tree degeneration was detected following 7 days in culture including: 40% to 50% decreases in number of branch segments, number of junctions, number of terminal branches, and total branch length. Scholl analyses similarly demonstrated a significant decrease in dendritic field complexity. Treatment of explants with BDNF+CNTF significantly attenuated dendritic field degeneration. Conclusions Retinal explant culture of Thy1-YFP tissue provides a useful model for time-lapse imaging of RGC dendritic field degeneration over a course of several days, and is capable of detecting neuroprotective amelioration of dendritic pruning within individual RGCs. PMID:26811145

  6. Time Lapse Storey Building Early Monitoring Based on Rapid Seismic Response Analysis in Indonesia

    NASA Astrophysics Data System (ADS)

    Julius, A. M.

    2015-12-01

    Within the last decade, advances in the acquisition, processing and transmission of data from seismic monitoring has contributed to the growth in the number structures instrumented with such systems. An equally important factor for such growth can be attributed to the demands by stakeholders to find rapid answers to important questions related to the functionality or state of "health" of structures during and immediately of a seismic events. Consequently, this study aims to monitor the storey building based on seismic response i. e. earthquake and tremor analysis at short time lapse using accelerographs data. This study used one of storey building (X) in Jakarta city that suffered the effects of Kebumen earthquake January 25th 2014, Pandeglang earthquake July 9th 2014, and Lebak earthquake November 8th 2014. Tremors used in this study are tremors after the three following earthquakes. Data processing used to determine peak ground acceleration (PGA), peak ground velocity (PGV), peak ground displacement (PGD), spectral acceleration (SA), spectral velocity (SV), spectral displacement (SD), A/V ratio, acceleration amplification and effective duration (te). Then determine the natural frequency (f0) and peak of H/V ratio using H/V ratio method. The earthquakes data processing result shows the value of peak ground motion, spectrum response, A/V ratio and acceleration amplification increases with height, while the value of the effective duration decreases. Then, tremors data processing result one month after each earthquakes shows the natural frequency of building in constant value. Increasing of peak ground motion, spectrum response, A/V ratio, acceleration amplification, then decrease of effective duration following the increase of building floors shows that the building construction supports the increasing of shaking and strongly influenced by local site effect. The constant value of building natural frequency shows the building still in good performance. This

  7. Time Lapse Gravity and Seismic Monitoring of CO2 Injection at the West Hastings Field, Texas

    NASA Astrophysics Data System (ADS)

    Ferguson, J. F.; Richards, T.; Klopping, F.; MacQueen, J.; Hosseini, S. A.

    2015-12-01

    Time lapse or 4D gravity and seismic reflection surveys are being conducted at the West Hastings Field near Houston, Texas to monitor the progress of CO2 injection. This Department of Energy supported CO2 sequestration experiment is conducted in conjunction with a Denbury Onshore, LLC tertiary recovery project. The reservoir is at a depth of 1.8 km in the Oligocene Frio sands and has been produced since the 1930s. Goals are an accounting and mapping of the injected CO2 and to determine if migration occurs along intra-reservoir faults. An integrated interpretation of the geophysical surveys will be made together with well logs and engineering data. Gravity monitoring of water versus gas replacement has been very successful, but liquid phase CO2 monitoring is problematic due to the smaller density contrast with respect to oil and water. This reservoir has a small volume to depth ratio and hence only a small gravity difference signal is expected on the surface. New borehole gravity technology introduced by Micro-g-Lacoste can make gravity measurements at near reservoir depths with a much higher signal to noise ratio. This method has been successfully evaluated on a simulation of the Hastings project. Field operations have been conducted for repeated surface and borehole gravity surveys beginning in 2013. The surface survey of 95 stations covers an area of 3 by 5 km and 22 borehole gravity logs are run in the interval above the Frio formation. 4D seismic reflection surveys are being made at 6 month intervals on the surface and in 3 VSP wells. CO2 injection into the targeted portion of the reservoir only began in early 2015 and monitoring will continue into 2017. To date only the baseline reservoir conditions have been assessed. The overall success of the gravity monitoring will not be determined until 2017.

  8. Microwells support high-resolution time-lapse imaging and development of preimplanted mouse embryos

    PubMed Central

    Chung, Yu-Hsiang; Hsiao, Yi-Hsing; Kao, Wei-Lun; Hsu, Chia-Hsien; Chen, Chihchen

    2015-01-01

    A vital aspect affecting the success rate of in vitro fertilization is the culture environment of the embryo. However, what is not yet comprehensively understood is the affect the biochemical, physical, and genetic requirements have over the dynamic development of human or mouse preimplantation embryos. The conventional microdrop technique often cultures embryos in groups, which limits the investigation of the microenvironment of embryos. We report an open microwell platform, which enables micropipette manipulation and culture of embryos in defined sub-microliter volumes without valves. The fluidic environment of each microwell is secluded from others by layering oil on top, allowing for non-invasive, high-resolution time-lapse microscopy, and data collection from each individual embryo without confounding factors. We have successfully cultured mouse embryos from the two-cell stage to completely hatched blastocysts inside microwells with an 89% success rate (n = 64), which is comparable to the success rate of the contemporary practice. Development timings of mouse embryos that developed into blastocysts are statistically different to those of embryos that failed to form blastocysts (p–value < 10−10, two-tailed Student's t-test) and are robust indicators of the competence of the embryo to form a blastocyst in vitro with 94% sensitivity and 100% specificity. Embryos at the cleavage- or blastocyst-stage following the normal development timings were selected and transferred to the uteri of surrogate female mice. Fifteen of twenty-two (68%) blastocysts and four of ten (40%) embryos successfully developed into normal baby mice following embryo transfer. This microwell platform, which supports the development of preimplanted embryos and is low-cost, easy to fabricate and operate, we believe, opens opportunities for a wide range of applications in reproductive medicine and cell biology. PMID:26015830

  9. Time-lapse 3-D seismic imaging of shallow subsurface contaminant flow.

    PubMed

    McKenna, J; Sherlock, D; Evans, B

    2001-12-01

    This paper presents a physical modelling study outlining a technique whereby buoyant contaminant flow within water-saturated unconsolidated sand was remotely monitored utilizing the time-lapse 3-D (TL3-D) seismic response. The controlled temperature and pressure conditions, along with the high level of acquisition repeatability attainable using sandbox physical models, allow the TL3-D seismic response to pore fluid movement to be distinguished from all other effects. TL3-D seismic techniques are currently being developed to monitor hydrocarbon reserves within producing reservoirs in an endeavour to improve overall recovery. However, in many ways, sandbox models under atmospheric conditions more accurately simulate the shallow subsurface than petroleum reservoirs. For this reason, perhaps the greatest application for analogue sandbox modelling is to improve our understanding of shallow groundwater and environmental flow mechanisms. Two fluid flow simulations were conducted whereby air and kerosene were injected into separate water-saturated unconsolidated sand models. In both experiments, a base 3-D seismic volume was recorded and compared with six later monitor surveys recorded while the injection program was conducted. Normal incidence amplitude and P-wave velocity information were extracted from the TL3-D seismic data to provide visualization of contaminant migration. Reflection amplitudes displayed qualitative areal distribution of fluids when a suitable impedance contrast existed between pore fluids. TL3-D seismic reflection tomography can potentially monitor the change in areal distribution of fluid contaminants over time, indicating flow patterns. However, other research and this current work have not established a quantifiable relationship between either normal reflection amplitudes and attenuation and fluid saturation. Generally, different pore fluids will have unique seismic velocities due to differences in compressibility and density. The predictable

  10. Characterization of Protein Structural Changes in Living Cells Using Time-Lapsed FTIR Imaging

    PubMed Central

    Gelfand, Paul; Smith, Randy J.; Stavitski, Eli; Borchelt, David R.; Miller, Lisa M.

    2015-01-01

    Fourier-transform infrared (FTIR) spectroscopic imaging is a widely used method for studying the chemistry of proteins, lipids, and DNA in biological systems without the need for additional tagging or labeling. This technique can be especially powerful for spatially resolved, temporal studies of dynamic changes such as in vivo protein folding in cell culture models. However, FTIR imaging experiments have typically been limited to dry samples as a result of the significant spectral overlap between water and the protein Amide I band centered at 1650 cm−1. Here, we demonstrate a method to rapidly obtain high quality FTIR spectral images at submicron pixel resolution in vivo over a duration of 18 h and longer through the development and use of a custom-built, demountable, microfluidic-incubator and a FTIR microscope coupled to a focal plane array (FPA) detector and a synchrotron light source. The combined system maximizes ease of use by allowing a user to perform standard cell culture techniques and experimental manipulation outside of the microfluidic-incubator, where assembly can be done just before the start of experimentation. The microfluidic-incubator provides an optimal path length of 6–8 μm and a submillimeter working distance in order to obtain FTIR images with 0.54–0.77 μm pixel resolution. In addition, we demonstrate a novel method for the correction of spectral distortions caused by varying concentrations of water over a subconfluent field of cells. Lastly, we use the microfluidic-incubator and time-lapsed FTIR imaging to determine the misfolding pathway of mutant copper–zinc superoxide dismutase (SOD1), the protein known to be a cause of familial amyotrophic lateral sclerosis (FALS). PMID:25965274

  11. Assessing spatial and temporal snowpack evolution and melt with time-lapse photography

    NASA Astrophysics Data System (ADS)

    Bush, C. E.; Ewers, B. E.; Beverly, D.; Speckman, H. N.; Hyde, K.; Ohara, N.

    2015-12-01

    Snowpack supplies and stores water for many ecosystems of the greater Rocky Mountain region. In Wyoming the snowpack supplies water to 18 states east and west of the Continental Divide. The spatial variability in physical and biological processes creates a heterogeneous pattern of snow evolution. Understanding these processes within individual plots and throughout the entire watershed increases the predictive power of snow distribution, melt rates and contribution to streamflow. However, on site sampling of snow can be an expensive and arduous process. The objective of this experiment was to quantify spatial and temporal patterns of snowpack evolution and melt rates while minimizing perturbations to snowpack through the use of time-lapse photography via trail cameras. Field cameras were assessed as a method to quantify snow depths throughout the 120 ha No Name watershed at approximately 3000 m elevation in central Wyoming. RGB trail cameras were installed at three systematically chosen sites within the watershed to correlate physical and biological drivers of snow distribution. Five stakes were placed in each site in heterogeneous spots that remained in the frame of the camera. Stakes were divided into five centimeter increments, alternating black and white bars, with red bars denoting each half meter. Images were then taken at two-hour intervals over a period of three-months and analyzed with the ImageJ program. Snowpack distributions, as well as melt rates, were variable at both the plot and watershed scales. Meteorological and physical drivers, primarily topography and radiation, accounted for the greatest variability when comparing among plot across the watershed; however, LAI and soil and air temperature were the most significant drivers within plots. Snow-melt rate increased as soils and course woody debris became exposed increasing ground and soil temperature. These data will improve process model predictions of streamflow from the watershed.

  12. A Local Index of Cloud Immersion in Tropical Forests Using Time-Lapse Photography

    NASA Astrophysics Data System (ADS)

    Bassiouni, M.; Scholl, M. A.

    2015-12-01

    Data on the frequency, duration and elevation of cloud immersion is essential to improve estimates of cloud water deposition in water budgets in cloud forests. Here, we present a methodology to detect local cloud immersion in remote tropical forests using time-lapse photography. A simple approach is developed to detect cloudy conditions in photographs within the canopy where image depth during clear conditions may be less than 10 meters and moving leaves and branches and changes in lighting are unpredictable. A primary innovation of this study is that cloudiness is determined from images without using a reference clear image and without minimal threshold value determination or human judgment for calibration. Five sites ranging from 600 to 1000 meters elevation along a ridge in the Luquillo Critical Zone Observatory, Puerto Rico were each equipped with a trail camera programmed to take an image every 30 minutes since March 2014. Images were classified using four selected cloud-sensitive image characteristics (SCICs) computed for small image regions: contrast, the coefficient of variation and the entropy of the luminance of each image pixel, and image colorfulness. K-means clustering provided reasonable results to discriminate cloudy from clear conditions. Preliminary results indicate that 79-94% (daytime) and 85-93% (nighttime) of validation images were classified accurately at one open and two closed canopy sites. The euclidian distances between SCICs vectors of images during cloudy conditions and the SCICs vector of the centroid of the cluster of clear images show potential to quantify cloud density in addition to immersion. The classification method will be applied to determine spatial and temporal patterns of cloud immersion in the study area. The presented approach offers promising applications to increase observations of low-lying clouds at remote mountain sites where standard instruments to measure visibility and cloud base may not be practical.

  13. Using electromagnetic conductivity imaging to generate time-lapse soil moisture estimates.

    NASA Astrophysics Data System (ADS)

    Huang, Jingyi; Scuderio, Elia; Corwin, Dennis; Triantafilis, John

    2015-04-01

    Irrigated agriculture is crucial to the agricultural productivity of the Moreno valley. To maintain profitability, more will need to be done by irrigators with less water, owing to competing demands from rapidly expanding urbanisation in southern California. In this regard, irrigators need to understand the spatial and temporal variation of soil moisture to discern inefficiencies. However, soil moisture is difficult to measure and monitor, unless a large bank of soil sensors are installed and at various depths in the profile. In order to value add to the limited amount of information, geophysical techniques, such as direct current resisivity (DCR) arrays are used to develop electrical resistivity images (ERI). Whilst successful the approach is time consuming and labour intensive. In this research we describe how equivalent data can be collected using a proximal sensing electromagnetic (EM) induction instrument (i.e. DUALEM-421) and inversion software (EM4Soil) to generate EM conductivity images (EMCI). Figure 1 shows the EMCI generated from DUALEM-421 data acquired at various days of a time-lapse experiment and including; day a) 0, b) 1, c) 2, d) 3, e) 5, f) 7 and g) 11. We calibrate the estimates of true electrical conductivity (sigma - mS/m) with volumetric moisture content and show with good accuracy the spatial and temporal variation of soil moisture status and over 12 day period. The results show clearly that the pivot sprinkler irrigation system is effective at providing sufficient amounts of water to the top 0.5 m of a Lucerne crop (i.e. red shaded areas of high sigma). However, in some places faulty sprinklers are evident owing to the lack of wetting (i.e. blue shaded areas of low sigma). In addition, and over time, our approach shows clearly the effect the Lucerne crop has in drying the soil profile and using the soil moisture.

  14. Tracking snowmelt in the subsurface: time-lapse electrical resistivity imaging on an alpine hill slope.

    NASA Astrophysics Data System (ADS)

    Thayer, D.; Parsekian, A.; Hyde, K.; Beverly, D.; Speckman, H. N.; Ewers, B. E.

    2015-12-01

    In the mountain West region the winter snowpack provides more than 70% of our annual water supply. Modeling and predicting the timing and magnitude of snowmelt-driven water yield is difficult due to the complexities of hydrologic systems that move meltwater from snow to rivers. Particular challenges are understanding the temporal and spatial domain of subsurface hydraulic processes at relevant scales, which range from points to catchments. Subsurface characterization often requires borehole instrumentation, which is expensive and extremely difficult to install in remote, rugged terrain. Advancements in non-invasive geophysical methods allow us to monitor changes in geophysical parameters over time and infer changes in hydraulic processes. In the No-Name experimental catchment in the Medicine Bow National Forest in Wyoming, we are conducting a multi-season, time-lapse electrical resistivity imaging survey on a sub-alpine hill slope. This south-facing, partially forested slope ranges from 5 degrees to 35 degrees in steepness and consists of a soil mantle covering buried glacial talus deposits of unknown depth. A permanent grid of down-slope and cross-slope electrode arrays is monitored up to four times a day. The arrays span the entire vertical distance of the slope, from an exposed bedrock ridge to a seasonal drainage below, and cover treed and non-treed areas. Geophysical measurements are augmented by temperature and moisture time-series instrumented below the surface in a contiguous 3 meter borehole. A time-series of multiple resistivity models each day from May to July shows the changing distribution of subsurface moisture during a seasonal drying sequence punctuated by isolated rain events. Spatial patterns of changing moisture indicate that soil and gravel in the top two meters drain into a saturated layer parallel to the slope which overlies less saturated material. These results suggest that water from snowmelt and rain events tends to move down-slope beneath

  15. Composite time-lapse computed tomography and micro finite element simulations: A new imaging approach for characterizing cement flows and mechanical benefits of vertebroplasty.

    PubMed

    Stadelmann, Vincent A; Zderic, Ivan; Baur, Annick; Unholz, Cynthia; Eberli, Ursula; Gueorguiev, Boyko

    2016-02-01

    Vertebroplasty has been shown to reinforce weak vertebral bodies and reduce fracture risks, yet cement leakage is a major problem that can cause severe complications. Since cement flow is nearly impossible to control during surgery, small volumes of cement are injected, but then mechanical benefits might be limited. A better understanding of cement flows within bone structure is required to further optimize vertebroplasty and bone augmentation in general. We developed a novel imaging method, composite time-lapse CT, to characterize cement flow during injection. In brief, composite-resolution time-lapse CT exploits the qualities of microCT and clinical CT. The method consists in overlaying low-resolution time-lapse CT scans acquired during injection onto pre-operative high-resolution microCT scans, generating composite-resolution time-lapse CT series of cement flow within bone. In this in vitro study, composite-resolution time-lapse CT was applied to eight intact and five artificially fractured cadaveric vertebrae during vertebroplasty. The time-lapse scans were acquired at one-milliliter cement injection steps until a total of 10 ml cement was injected. The composite-resolution series were then converted into micro finite element models to compute strains distribution under virtual axial loading. Relocation of strain energy density within bone structure was observed throughout the progression of the procedure. Interestingly, the normalized effect of cement injection on the overall stiffness of the vertebrae was similar between intact and fractured specimens, although at different orders of magnitude. In conclusion, composite time-lapse CT can picture cement flows during bone augmentation. The composite images can also be easily converted into finite element models to compute virtual strain distributions under loading at every step of an injection, providing deeper understanding on the biomechanics of vertebroplasty.

  16. Time-lapse and UAV Thermal Imaging of Glacial and Periglacial Environments in the Peruvian Andes (Cordillera Blanca, Peru)

    NASA Astrophysics Data System (ADS)

    McKenzie, J. M.; Wigmore, O.; Aubry-Wake, C.; Mark, B. G.; Hellstrom, R. A.; Lautz, L.

    2015-12-01

    In the tropics, the acquisition of high-resolution geospatial data of high-mountain glacial and periglacial systems presents unique challenges due to remote site access and very high elevations. For glaciers and hydrologic systems, a key variable of interest is surface temperature as it constrains glacier melt rates, traces hydrologic processes, and is needed for the calibration of energy budget models. We present results from two studies that acquired high resolution temperature data from the Cuchillacocha Glacier, Peru (9.24°S, 77.21°W). The glacier resides on the western drainage of the Cordillera Blanca with an elevation range of 4700 to 6096 m. In the first study we use high resolution time-lapse infrared imagery (5-10 minute interval over 3 days; 0.6 m2 pixel size) to observe diel changes in the surface energy budget of the glacier and to demonstrate how radiation from bare rock adjacent to the glacier may affect melt rates. In the second study we use a newly developed, inexpensive unmanned aerial vehicle (UAV) for high resolution multispectral mapping of the glacier (2 cm resolution orthomosaic and 5 cm resolution DEM). We present results showing how the time-lapse and the high-resolution UAV imagery can be combined to further strengthen our understanding of the Cuchillacocha Glacier's energy budget and possible insights about turbulent heat fluxes. While the new instruments provide unprecedented data acquisition capabilities, there is an outstanding need for proper data correction. Spatial/thermal control points and post-processing algorithms are needed to produce quantifiable datasets. For example, our post-processed time-lapse imagery has an r2 > 0.9 after emissivity, transmissivity and offset corrections.

  17. Effect of Time Lapse on the Diagnostic Accuracy of Cone Beam Computed Tomography for Detection of Vertical Root Fractures.

    PubMed

    Eskandarloo, Amir; Asl, Amin Mahdavi; Jalalzadeh, Mohsen; Tayari, Maryam; Hosseinipanah, Mohammad; Fardmal, Javad; Shokri, Abbas

    2016-01-01

    Accurate and early diagnosis of vertical root fractures (VRFs) is imperative to prevent extensive bone loss and unnecessary endodontic and prosthodontic treatments. The aim of this study was to assess the effect of time lapse on the diagnostic accuracy of cone beam computed tomography (CBCT) for VRFs in endodontically treated dog's teeth. Forty-eight incisors and premolars of three adult male dogs underwent root canal therapy. The teeth were assigned to two groups: VRFs were artificially induced in the first group (n=24) while the teeth in the second group remained intact (n=24). The CBCT scans were obtained by NewTom 3G unit immediately after inducing VRFs and after one, two, three, four, eight, 12 and 16 weeks. Three oral and maxillofacial radiologists blinded to the date of radiographs assessed the presence/absence of VRFs on CBCT scans. The sensitivity, specificity and accuracy values were calculated and data were analyzed using SPSS v.16 software and ANOVA. The total accuracy of detection of VRFs immediately after surgery, one, two, three, four, eight, 12 and 16 weeks was 67.3%, 68.7%, 66.6%, 64.6%, 64.5%, 69.4%, 68.7%, 68% respectively. The effect of time lapse on detection of VRFs was not significant (p>0.05). Overall sensitivity, specificity and accuracy of CBCT for detection of VRFs were 74.3%, 62.2%, 67.2% respectively. Cone beam computed tomography is a valuable tool for detection of VRFs. Time lapse (four months) had no effect on detection of VRFs on CBCT scans. PMID:27007339

  18. Analysis of Zebrafish Kidney Development with Time-lapse Imaging Using a Dissecting Microscope Equipped for Optical Sectioning

    PubMed Central

    Perner, Birgit; Schnerwitzki, Danny; Graf, Michael; Englert, Christoph

    2016-01-01

    In order to understand organogenesis, the spatial and temporal alterations that occur during development of tissues need to be recorded. The method described here allows time-lapse analysis of normal and impaired kidney development in zebrafish embryos by using a fluorescence dissecting microscope equipped for structured illumination and z-stack acquisition. To visualize nephrogenesis, transgenic zebrafish (Tg(wt1b:GFP)) with fluorescently labeled kidney structures were used. Renal defects were triggered by injection of an antisense morpholino oligonucleotide against the Wilms tumor gene wt1a, a factor known to be crucial for kidney development. The advantage of the experimental setup is the combination of a zoom microscope with simple strategies for re-adjusting movements in x, y or z direction without additional equipment. To circumvent focal drift that is induced by temperature variations and mechanical vibrations, an autofocus strategy was applied instead of utilizing a usually required environmental chamber. In order to re-adjust the positional changes due to a xy-drift, imaging chambers with imprinted relocation grids were employed. In comparison to more complex setups for time-lapse recording with optical sectioning such as confocal laser scanning or light sheet microscopes, a zoom microscope is easy to handle. Besides, it offers dissecting microscope-specific benefits such as high depth of field and an extended working distance. The method to study organogenesis presented here can also be used with fluorescence stereo microscopes not capable of optical sectioning. Although limited for high-throughput, this technique offers an alternative to more complex equipment that is normally used for time-lapse recording of developing tissues and organ dynamics. PMID:27078207

  19. Near real-time imaging of molasses injections using time-lapse electrical geophysics at the Brandywine DRMO, Brandywine, Maryland

    NASA Astrophysics Data System (ADS)

    Versteeg, R. J.; Johnson, T.; Major, B.; Day-Lewis, F. D.; Lane, J. W.

    2010-12-01

    Enhanced bioremediation, which involves introduction of amendments to promote biodegradation, increasingly is used to accelerate cleanup of recalcitrant compounds and has been identified as the preferred remedial treatment at many contaminated sites. Although blind introduction of amendments can lead to sub-optimal or ineffective remediation, the distribution of amendment throughout the treatment zone is difficult to measure using conventional sampling. Because amendments and their degradation products commonly have electrical properties that differ from those of ambient soil, time-lapse electrical geophysical monitoring has the potential to verify amendment emplacement and distribution. In order for geophysical monitoring to be useful, however, results of the injection ideally should be accessible in near real time. In August 2010, we demonstrated the feasibility of near real-time, autonomous electrical geophysical monitoring of amendment injections at the former Defense Reutilization and Marketing Office (DRMO) in Brandywine, Maryland. Two injections of about 1000 gallons each of molasses, a widely used amendment for enhanced bioremediation, were monitored using measurements taken with borehole and surface electrodes. During the injections, multi-channel resistance data were recorded; data were transmitted to a server and processed using a parallel resistivity inversion code; and results in the form of time-lapse imagery subsequently were posted to a website. This process occurred automatically without human intervention. The resulting time-lapse imagery clearly showed the evolution of the molasses plume. The delay between measurements and online delivery of images was between 45 and 60 minutes, thus providing actionable information that could support decisions about field procedures and a check on whether amendment reached target zones. This experiment demonstrates the feasibility of using electrical imaging as a monitoring tool both during amendment emplacement

  20. Effect of Time Lapse on the Diagnostic Accuracy of Cone Beam Computed Tomography for Detection of Vertical Root Fractures.

    PubMed

    Eskandarloo, Amir; Asl, Amin Mahdavi; Jalalzadeh, Mohsen; Tayari, Maryam; Hosseinipanah, Mohammad; Fardmal, Javad; Shokri, Abbas

    2016-01-01

    Accurate and early diagnosis of vertical root fractures (VRFs) is imperative to prevent extensive bone loss and unnecessary endodontic and prosthodontic treatments. The aim of this study was to assess the effect of time lapse on the diagnostic accuracy of cone beam computed tomography (CBCT) for VRFs in endodontically treated dog's teeth. Forty-eight incisors and premolars of three adult male dogs underwent root canal therapy. The teeth were assigned to two groups: VRFs were artificially induced in the first group (n=24) while the teeth in the second group remained intact (n=24). The CBCT scans were obtained by NewTom 3G unit immediately after inducing VRFs and after one, two, three, four, eight, 12 and 16 weeks. Three oral and maxillofacial radiologists blinded to the date of radiographs assessed the presence/absence of VRFs on CBCT scans. The sensitivity, specificity and accuracy values were calculated and data were analyzed using SPSS v.16 software and ANOVA. The total accuracy of detection of VRFs immediately after surgery, one, two, three, four, eight, 12 and 16 weeks was 67.3%, 68.7%, 66.6%, 64.6%, 64.5%, 69.4%, 68.7%, 68% respectively. The effect of time lapse on detection of VRFs was not significant (p>0.05). Overall sensitivity, specificity and accuracy of CBCT for detection of VRFs were 74.3%, 62.2%, 67.2% respectively. Cone beam computed tomography is a valuable tool for detection of VRFs. Time lapse (four months) had no effect on detection of VRFs on CBCT scans.

  1. Time-Lapse Receiver Functions Mapping Yearly Variations of Shallow Subsurface

    NASA Astrophysics Data System (ADS)

    Gao, L.; Morozov, I. B.

    2013-12-01

    Receiver-function (RF) analysis is broadly used in earthquake seismology and represents the standard tool for studying the shear- (S-) velocity structure within depths from ~10 to 700 km below the surface. This method has also been used in crustal- and upper-mantle scale controlled-source studies; however, it has still not yet been applied to 3-D reflection seismic data. Receiver functions extracted from exploration-style records should allow mapping shear-wave velocity variations to the depths of about 10-100 m, with detailed sampling facilitated by the large density of receivers and comparatively high frequency of recording. Here, we applied the RF method to a time-lapse reflection seismic experiment conducted at the Weyburn oil field in southern Saskatchewan, Canada. For each receiver, the RFs were obtained by deconvolving the vertical from the radial and transverse components of the three-component seismic records and stacking of the different sources. This allowed measuring the time differences between the primary and S-wave arrivals, from which the S-wave velocities were constrained. Using three available vintages of seismic data: 1999 (baseline), 2001 and 2002 (monitors), we derived the S- and P-wave time differences within the shallow subsurface for each acquisition year. The time-difference maps from 2001 and 2002 (Figure) were further compared with the baseline survey. The results show a general linear decrease in the S/P lags from the northeast to southwest in each of the three years, and especially in 2002. The time lags of monitors in most of the survey area are slightly shifted decreasingly (~2 ms) relative to the baseline survey. In the 2002 to basemap comparison, a nearly continuous shallow 'channel' trending from SW to NE appears to be indicated (green dashed line in the Figure). Tentatively, these features could be associated with annual variations of precipitation affecting the seismic velocities in the weathered near surface (to ~20 m depth). An

  2. Time-lapse Geophysical Monitoring of the Subsurface Hydrology at Kings Park, Western Australia

    NASA Astrophysics Data System (ADS)

    Adekoya, Tunde; McGrath, Gavan; Leopold, Matthias; Shragge, Jeffrey; Challis, Anthea; Stevens, Jason; Miller, Ben

    2015-04-01

    The increasing occurrence of drought stress throughout Southwestern Western Australia is postulated to have contributed to the decline of Banksia populations both in Kings Park, Perth, and in the Banksia woodlands in the greater Swan Coastal Plain region. To help quantify these assertions, there is an urgent need to better understand the base levels of soil moisture content - as well as seasonal variations thereof - in these geographical regions. We conducted time-lapse (TL) electrical resistivity tomography (ERT) and ground penetrating radar (GPR) methods on a monthly basis (May-August 2014). In addition, at each site we hand-augured test holes to a depth of 3-4 m and collected samples at 20-cm intervals to enable grain-size analysis, soil moisture content and water retention tests. PR2 capacitance probe measurements were also acquired when augering to enable a moisture content comparison study. The acquired TL ERT datasets were inverted using 2D EarthImager software and the temporal variations in resistivity were interpreted in terms of changes in moisture content. The TL ERT data reveal significant calendar variations in the spatial distribution of moisture content. The TL ERT inversions also detected isolated less resistive lithologies and the depth to groundwater. Processed TL GPR data were interpreted to show vertical variations in the vadose zone moisture content. The water content variations were consistent with the rainfall data. The grain-size distributions of the samples were analysed statistically. The apparent resistivity values from the analysed samples and observed volumetric water content are strongly correlated (R2=0.84) as may be expected from Archie's law. Soil moisture content analysis results including the PR2 probe measurements were plotted as a function of depth, the result shows vertical variations in moisture content with depth. The hydrological tests indicated the properties of the subsurface lithologies and confirm the responses of the

  3. 3-D Time-lapse Electrical Resistivity Monitoring of Injected CO2 in a Shallow Aquifer

    NASA Astrophysics Data System (ADS)

    Doetsch, J.; Vest Christiansen, A.; Auken, E.; Fiandaca, G.; Graham Cahill, A.

    2013-12-01

    Contamination of potable groundwater by leaking CO2 is a potential risk of carbon sequestration. With the help of a field experiment, we investigate if surface electrical resistivity tomography (ERT) can detect dissolved CO2 in a shallow aquifer. For this purpose, we injected CO2 at a depth of 5 and 10 m and monitored its migration using 320 electrodes on a 126 m × 20 m surface grid. A fully automated acquisition system continuously collected data and uploaded it into an online database. The large amount of data allows for time-series analysis using geostatistical techniques for noise estimation and data interpolation to compensate for intermittent instrument failure. We estimate a time-dependent noise level for each ERT configuration, taking data variation and measurement frequency into account. A baseline inversion reveals the geology at the site consisting of aeolian sands near the surface and glacial sands below 5 m depth. Directly following the injection, we image the CO2 gas phase in the aquifer as an increase in resistivity and the higher water saturation in the unsaturated zone as a decrease in resistivity. At later times, the 2-D and 3-D time-lapse inversions clearly image the dissolved CO2 plume with decreased electrical resistivity values. We can image the geochemical changes induced by the dissolved CO2 until the end of the acquisition, 120 days after the injection start. During these 120 days, the CO2 migrates about 40 m in the expected groundwater flow direction (towards south-west). Water electrical conductivity (EC) sampling using 68 sensors in 31 wells allows for very good verification of the ERT results. Water EC and ERT results generally agree very well, with the water sampling showing some fine scale variations that cannot be resolved by the ERT. The ERT images have their strength in outlining the plume's shape in three dimensions and in being able to image the plume outside the well field. These results highlight the potential for imaging

  4. Multiple Lapse Time Window Analysis Study Using Single Earthquake in the South Korea

    NASA Astrophysics Data System (ADS)

    Rachman, A. N.; Chung, T. W.

    2015-12-01

    Single earthquake data was used to separate Qi-1 and Qs-1 for South Korea (S. Korea) with the Multiple Lapse Time Window Analysis (MLTWA). The MLTWA method have been used numerous earthquake data at once to simulate the energy of observed seismic envelopes with theoretical values obtained by a single source assumption. The theoretical values of MLTWA method is normally obtained by numerical method such as Direct Simulation Monte Carlo (DSMC) method due to availability for various source depth. One of the major concerns with the MLTWA method is that, it normally shows a large observational scatter caused by the multiple use of earthquakes which have different radiation pattern and focal depth, and the regional alteration of local structure. Recently our study of MLTWA using single event showed realistic results when the number of recorded station was more than 8, without consideration of radiation pattern in DSMC method (Asep et al., 2015). In particular, Asep et al. (2015) found the significant effect of source depth which had been neglected by the previous MLTWA studies (Asep et al. (2015). This study, therefore, focused on the depth effect of MLTWA by relocation of 53 earthquakes occurred in S. Korea from March 2003 to December 2014. To obtain reliable depths of these events, seven crustal models (Fig. 1) were constructed based on two refraction profiles across the Korean Peninsula. The Vp/Vs ratio and the preliminary origin time (POT) was obtained by the Wadati plot. Since focal depth and origin time is a coupled data, a series of inversions using HYPO71 were performed for only three parameters (latitude, longitude, and origin time) of earthquakes while keeping its depth fixed each time. The residuals were calculated for varied focal depth from 0 to 30 km with an increment of 0.5 km, and depth range of minimum rms residual (minimum rms residual plus 0.05) was selected. For the minimum depth range of seven models, the closest range with the POT was selected as

  5. Estimating rheological properties of lava flows using high-resolution time lapse imaging

    NASA Astrophysics Data System (ADS)

    James, M. R.; Applegarth, L. J.; Pinkerton, H.; Fryer, T.

    2011-12-01

    During effusive eruptions, property and infrastructure can be threatened by lava flow inundation. In order to maximise the effectiveness of the response to such an event, it is necessary to be able to reliably forecast the area that will be affected. One of the major controls on the advance of a lava flow is its rheology, which is spatially and temporally variable, and depends on many underlying factors. Estimating the rheological properties of a lava flow, and the change in these over space and time is therefore of the utmost importance. Here we report estimates of rheological properties made from geometric and velocity measurements on integrated topographic and image data using the method of Ellis et al. (2004) (Ellis B, Wilson L & Pinkerton H (2004) Estimating the rheology of basaltic lava flows. Lunar & Planetary Science XXXV Abst. 1550). These are then compared to the viscosity predicted from composition and temperature by the GRD model (Giordano D, Russell JK, & Dingwell DB (2008) Viscosity of Magmatic Liquids: A Model. Earth & Planetary Science Letters, 271, 123-134). During the 13 May 2008 - 6 July 2009 eruption of Mt Etna, Sicily, lava flows were emplaced into the Valle del Bove, reaching a maximum length of >6 km. Towards the end of the eruption, multiple channelized aa flows were active simultaneously, reaching tens to hundreds of metres in length. Flow lifetimes were of the order hours to days. In the last month of the eruption, we installed a Canon EOS 450D camera at Pizzi Deneri, on the north side of the Valle del Bove, to collect visible images at 15-minute intervals. On one day, topographic data (using a Riegl LPM-321 terrestrial laser scanner) and thermal images (using a FLIR Thermacam S40) were also collected from this location. The fronts of some of the larger flows were tracked through the time lapse image sequence. Using knowledge of the camera imaging geometry, the pixel tracks were reprojected onto the topographic surface to determine flow

  6. Unravelling complex processes during effusive volcanic eruptions using high resolution time-lapse imagery

    NASA Astrophysics Data System (ADS)

    Pinkerton, H.; James, M. R.; Applegarth, L. J.

    2010-12-01

    While lava flow models are being used successfully to predict areas that are liable to be covered during effusive eruptions, lavas that erupt for more than a few weeks have the potential to develop lava tubes, ephemeral vents and accidental breaches leading to new lava flow pathways. The processes resulting in each of these are not fully understood. Some of these may be related to variations in effusion rate during the eruption; others may be topographically-controlled. There is a therefore a need for a detailed analysis of the development of flow fields to improve our understanding of the factors that control maximum flow length of individual flows, ephemeral vent formation, accidental breaches, and the transition from channelled flows to tube-fed flows. During the final month of the 13 May 2008 to 6 July 2009 eruption into the Valle del Bove on Etna, four Canon EOS 450D cameras (3 visible and one modified to collect infrared images) were installed at critical locations around the rim of the Valle del Bove (Schiena dell’ Àsino, Monte Zoccolaro and Pizzi Deneri) to record the emplacement and development of lava flows erupted during this period. Some of the cameras collected images every 5 minutes, while others collected images every 15 minutes. During this time, active lava flows were restricted to the upper part of a large delta, individual flows lasted between a few hours and a few days and they had lengths ranging from tens to hundreds of metres. The resulting time-lapse images reveal significant reduction in mean flow lengths towards the end of the observation period; this is compatible with a marked decrease in effusion rate. Superimposed on this reduction, there were marked variations in effusion rate on shorter time periods. These short-term changes played a significant role in the development of breakouts and ephemeral vent formation and reactivation. The images also place constraints on the relative importance of factors controlling the maximum flow

  7. Time-lapse 3D electrical resistivity tomography to monitor soil-plant interactions

    NASA Astrophysics Data System (ADS)

    Boaga, Jacopo; Rossi, Matteo; Cassiani, Giorgio; Putti, Mario

    2013-04-01

    In this work we present the application of time-lapse non-invasive 3D micro- electrical tomography (ERT) to monitor soil-plant interactions in the root zone in the framework of the FP7 Project CLIMB (Climate Induced Changes on the Hydrology of Mediterranean Basins). The goal of the study is to gain a better understanding of the soil-vegetation interactions by the use of non-invasive techniques. We designed, built and installed a 3D electrical tomography apparatus for the monitoring of the root zone of a single apple tree in an orchard located in the Trentino region, Northern Italy. The micro-ERT apparatus consists of 48 buried electrodes on 4 instrumented micro boreholes plus 24 mini-electrodes on the surface spaced 0.1 m on a square grid. We collected repeated ERT and TDR soil moisture measurements for one year and performed two different controlled irrigation tests: one during a very dry Summer and one during a very wet and highly dynamic plant growing Spring period. We also ran laboratory analyses on soil specimens, in order to evaluate the electrical response at different saturation steps. The results demonstrate that 3D micro-ERT is capable of characterizing subsoil conditions and monitoring root zone activities, especially in terms of root zone suction regions. In particular, we note that in very dry conditions, 3D micro ERT can image water plumes in the shallow subsoil produced by a drip irrigation system. In the very dynamic growing season, under abundant irrigation, micro 3D ERT can detect the main suction zones caused by the tree root activity. Even though the quantitative use of this technique for moisture content balance suffers from well-known inversion difficulties, even the pure imaging of the active root zone is a valuable contribution. However the integration of the measurements in a fully coupled hydrogeophysical inversion is the way forward for a better understanding of subsoil interactions between biomass, hydrosphere and atmosphere.

  8. Penicillin Induced Persistence in Chlamydia trachomatis: High Quality Time Lapse Video Analysis of the Developmental Cycle

    PubMed Central

    Barlow, David; Wang, Yibing; Salim, Omar; Lambden, Paul R.; Clarke, Ian N.

    2009-01-01

    Background Chlamydia trachomatis is a major human pathogen with a unique obligate intracellular developmental cycle that takes place inside a modified cytoplasmic structure known as an inclusion. Following entry into a cell, the infectious elementary body (EB) differentiates into a non - infectious replicative form known as a reticulate body (RB). RBs divide by binary fission and at the end of the cycle they redifferentiate into EBs. Treatment of C.trachomatis with penicillin prevents maturation of RBs which survive and enlarge to become aberrant RBs within the inclusion in a non - infective persistent state. Persistently infected individuals may be a reservoir for chlamydial infection. The C.trachomatis genome encodes the enzymes for peptidoglycan (PG) biosynthesis but a PG sacculus has never been detected. This coupled to the action of penicillin is known as the chlamydial anomaly. We have applied video microscopy and quantitative DNA assays to the chlamydial developmental cycle to assess the effects of penicillin treatment and establish a framework for investigating penicillin induced chlamydial persistence. Principal Findings Addition of penicillin at the time of cell infection does not prevent uptake and the establishment of an inclusion. EB to RB transition occurs but bacterial cytokinesis is arrested by the second binary fission. RBs continue to enlarge but not divide in the presence of penicillin. The normal developmental cycle can be recovered by the removal of penicillin although the large, aberrant RBs do not revert to the normal smaller size but remain present to the completion of the developmental cycle. Chromosomal and plasmid DNA replication is unaffected by the addition of penicillin but the arrest of bacterial cytokinesis under these conditions results in RBs accumulating multiple copies of the genome. Conclusions We have applied video time lapse microscopy to the study of the chlamydial developmental cycle. Linked with accurate measures of genome

  9. Globally referenced real time monitoring of mass movements using monoscopic time-lapse photography.

    NASA Astrophysics Data System (ADS)

    Kenner, Robert; Phillips, Marcia; Buchroithner, Manfred

    2016-04-01

    The creep movement of a rock glacier was monitored in daily resolution using images of an automatic in-situ time-lapse camera (AC). Displacements were calculated between the images in 2D image coordinates using the imaging velocimetry algorithm of Roesgen and Totaro, 1995. To georeference and scale these displacements, a creep velocity field captured once by a terrestrial laser scan (TLS) repeat measurement was used. The laser scan point cloud and the creep velocity vector field were projected in image coordinates of the AC to obtain a georeferencing mask, a scale mask and an azimuth mask for the 2D displacements calculated between two images. The scale mask was obtained by comparing the TLS derived displacement vectors with those of the AC, referring to a common measurement period. The automatic procedure includes the following work steps: 1. Offsets between two images are identified and corrected based on image parts representing unchanged terrain. 2. 2D displacements are calculated between all chronological image sequences. 3. Faulty displacement vectors are eliminated based on a predefined threshold for spatial direction differences. 4. The remaining displacements are georeferenced, scaled and attributed with individual displacement directions (azimuths) in global coordinates. 5. In addition to the displacement values, displacement velocities and accelerations are calculated using the date of the images. 6. For chronologically successive displacement vector fields, the spatial mean of the relative velocity is defined and expressed as a percentage of the first displacement velocity in the series. The time series of the relative velocities is expressed in chart form. 7. The spatial resolution of all georeferenced output data sets is homogenized, as they were influenced by the central projection of the photos. The described procedure proved to be a reliable, low cost method to monitor mass wasting processes. Even under difficult conditions, like thin snow coverage

  10. Soundscape and Noise Exposure Monitoring in a Marine Protected Area Using Shipping Data and Time-Lapse Footage.

    PubMed

    Merchant, Nathan D; Pirotta, Enrico; Barton, Tim R; Thompson, Paul M

    2016-01-01

    We review recent work that developed new techniques for underwater noise assessment that integrate acoustic monitoring with automatic identification system (AIS) shipping data and time-lapse video, meteorological, and tidal data. Two sites were studied within the Moray Firth Special Area of Conservation (SAC) for bottlenose dolphins, where increased shipping traffic is expected from construction of offshore wind farms outside the SAC. Noise exposure varied markedly between the sites, and natural and anthropogenic contributions were characterized using multiple data sources. At one site, AIS-operating vessels accounted for total cumulative sound exposure (0.1-10 kHz), suggesting that noise modeling using the AIS would be feasible. PMID:26611022

  11. A Dynamic Programming Model for Optimizing Frequency of Time-Lapse Seismic Monitoring in Geological CO2 Storage

    NASA Astrophysics Data System (ADS)

    Bhattacharjya, D.; Mukerji, T.; Mascarenhas, O.; Weyant, J.

    2005-12-01

    Designing a cost-effective and reliable monitoring program is crucial to the success of any geological CO2 storage project. Effective design entails determining both, the optimal measurement modality, as well as the frequency of monitoring the site. Time-lapse seismic provides the best spatial coverage and resolution for reservoir monitoring. Initial results from Sleipner (Norway) have demonstrated effective monitoring of CO2 plume movement. However, time-lapse seismic is an expensive monitoring technique especially over the long term life of a storage project and should be used judiciously. We present a mathematical model based on dynamic programming that can be used to estimate site-specific optimal frequency of time-lapse surveys. The dynamics of the CO2 sequestration process are simplified and modeled as a four state Markov process with transition probabilities. The states are M: injected CO2 safely migrating within the target zone; L: leakage from the target zone to the adjacent geosphere; R: safe migration after recovery from leakage state; and S: seepage from geosphere to the biosphere. The states are observed only when a monitoring survey is performed. We assume that the system may go to state S only from state L. We also assume that once observed to be in state L, remedial measures are always taken to bring it back to state R. Remediation benefits are captured by calculating the expected penalty if CO2 seeped into the biosphere. There is a trade-off between the conflicting objectives of minimum discounted costs of performing the next time-lapse survey and minimum risk of seepage and its associated costly consequences. A survey performed earlier would spot the leakage earlier. Remediation methods would have been utilized earlier, resulting in savings in costs attributed to excessive seepage. On the other hand, there are also costs for the survey and remedial measures. The problem is solved numerically using Bellman's optimality principal of dynamic

  12. Soundscape and Noise Exposure Monitoring in a Marine Protected Area Using Shipping Data and Time-Lapse Footage.

    PubMed

    Merchant, Nathan D; Pirotta, Enrico; Barton, Tim R; Thompson, Paul M

    2016-01-01

    We review recent work that developed new techniques for underwater noise assessment that integrate acoustic monitoring with automatic identification system (AIS) shipping data and time-lapse video, meteorological, and tidal data. Two sites were studied within the Moray Firth Special Area of Conservation (SAC) for bottlenose dolphins, where increased shipping traffic is expected from construction of offshore wind farms outside the SAC. Noise exposure varied markedly between the sites, and natural and anthropogenic contributions were characterized using multiple data sources. At one site, AIS-operating vessels accounted for total cumulative sound exposure (0.1-10 kHz), suggesting that noise modeling using the AIS would be feasible.

  13. 3D time-lapse analysis of Rab11/FIP5 complex: spatiotemporal dynamics during apical lumen formation.

    PubMed

    Mangan, Anthony; Prekeris, Rytis

    2015-01-01

    Fluorescent imaging of fixed cells grown in two-dimensional (2D) cultures is one of the most widely used techniques for observing protein localization and distribution within cells. Although this technique can also be applied to polarized epithelial cells that form three-dimensional (3D) cysts when grown in a Matrigel matrix suspension, there are still significant limitations in imaging cells fixed at a particular point in time. Here, we describe the use of 3D time-lapse imaging of live cells to observe the dynamics of apical membrane initiation site (AMIS) formation and lumen expansion in polarized epithelial cells. PMID:25800842

  14. Visualization of craniofacial development in the sox10: kaede transgenic zebrafish line using time-lapse confocal microscopy.

    PubMed

    Gfrerer, Lisa; Dougherty, Max; Liao, Eric C

    2013-01-01

    Vertebrate palatogenesis is a highly choreographed and complex developmental process, which involves migration of cranial neural crest (CNC) cells, convergence and extension of facial prominences, and maturation of the craniofacial skeleton. To study the contribution of the cranial neural crest to specific regions of the zebrafish palate a sox10: kaede transgenic zebrafish line was generated. Sox10 provides lineage restriction of the kaede reporter protein to the neural crest, thereby making the cell labeling a more precise process than traditional dye or reporter mRNA injection. Kaede is a photo-convertible protein that turns from green to red after photo activation and makes it possible to follow cells precisely. The sox10: kaede transgenic line was used to perform lineage analysis to delineate CNC cell populations that give rise to maxillary versus mandibular elements and illustrate homology of facial prominences to amniotes. This protocol describes the steps to generate a live time-lapse video of a sox10: kaede zebrafish embryo. Development of the ethmoid plate will serve as a practical example. This protocol can be applied to making a time-lapse confocal recording of any kaede or similar photoconvertible reporter protein in transgenic zebrafish. Furthermore, it can be used to capture not only normal, but also abnormal development of craniofacial structures in the zebrafish mutants.

  15. Lapse-time dependent coda-wave depth sensitivity to local velocity perturbations in 3-D heterogeneous elastic media

    NASA Astrophysics Data System (ADS)

    Obermann, Anne; Planès, Thomas; Hadziioannou, Céline; Campillo, Michel

    2016-07-01

    In the context of seismic monitoring, recent studies made successful use of seismic coda waves to locate medium changes on the horizontal plane. Locating the depth of the changes, however, remains a challenge. In this paper, we use 3-D wavefield simulations to address two problems: firstly, we evaluate the contribution of surface and body wave sensitivity to a change at depth. We introduce a thin layer with a perturbed velocity at different depths and measure the apparent relative velocity changes due to this layer at different times in the coda and for different degrees of heterogeneity of the model. We show that the depth sensitivity can be modelled as a linear combination of body- and surface-wave sensitivity. The lapse-time dependent sensitivity ratio of body waves and surface waves can be used to build 3-D sensitivity kernels for imaging purposes. Secondly, we compare the lapse-time behavior in the presence of a perturbation in horizontal and vertical slabs to address, for instance, the origin of the velocity changes detected after large earthquakes.

  16. High-resolution Time-lapse Imaging and Automated Analysis of Microtubule Dynamics in Living Human Umbilical Vein Endothelial Cells.

    PubMed

    Braun, Alexander; Caesar, Nicole M; Dang, Kyvan; Myers, Kenneth A

    2016-01-01

    The physiological process by which new vasculature forms from existing vasculature requires specific signaling events that trigger morphological changes within individual endothelial cells (ECs). These processes are critical for homeostatic maintenance such as wound healing, and are also crucial in promoting tumor growth and metastasis. EC morphology is defined by the organization of the cytoskeleton, a tightly regulated system of actin and microtubule (MT) dynamics that is known to control EC branching, polarity and directional migration, essential components of angiogenesis. To study MT dynamics, we used high-resolution fluorescence microscopy coupled with computational image analysis of fluorescently-labeled MT plus-ends to investigate MT growth dynamics and the regulation of EC branching morphology and directional migration. Time-lapse imaging of living Human Umbilical Vein Endothelial Cells (HUVECs) was performed following transfection with fluorescently-labeled MT End Binding protein 3 (EB3) and Mitotic Centromere Associated Kinesin (MCAK)-specific cDNA constructs to evaluate effects on MT dynamics. PlusTipTracker software was used to track EB3-labeled MT plus ends in order to measure MT growth speeds and MT growth lifetimes in time-lapse images. This methodology allows for the study of MT dynamics and the identification of how localized regulation of MT dynamics within sub-cellular regions contributes to the angiogenic processes of EC branching and migration. PMID:27584860

  17. Lapse-time-dependent coda-wave depth sensitivity to local velocity perturbations in 3-D heterogeneous elastic media

    NASA Astrophysics Data System (ADS)

    Obermann, Anne; Planès, Thomas; Hadziioannou, Céline; Campillo, Michel

    2016-10-01

    In the context of seismic monitoring, recent studies made successful use of seismic coda waves to locate medium changes on the horizontal plane. Locating the depth of the changes, however, remains a challenge. In this paper, we use 3-D wavefield simulations to address two problems: first, we evaluate the contribution of surface- and body-wave sensitivity to a change at depth. We introduce a thin layer with a perturbed velocity at different depths and measure the apparent relative velocity changes due to this layer at different times in the coda and for different degrees of heterogeneity of the model. We show that the depth sensitivity can be modelled as a linear combination of body- and surface-wave sensitivity. The lapse-time-dependent sensitivity ratio of body waves and surface waves can be used to build 3-D sensitivity kernels for imaging purposes. Second, we compare the lapse-time behaviour in the presence of a perturbation in horizontal and vertical slabs to address, for instance, the origin of the velocity changes detected after large earthquakes.

  18. The Use of Time-Lapse Optical Coherence Tomography to Image the Effects of Microapplied Toxins on the Retina

    PubMed Central

    Majdi, Joseph A.; Qian, Haohua; Li, Yichao; Langsner, Robert J.; Shea, Katherine I.; Agrawal, Anant; Hammer, Daniel X.; Hanig, Joseph P.; Cohen, Ethan D.

    2015-01-01

    Purpose. We developed a novel technique for accelerated drug screening and retinotoxin characterization using time-lapse optical coherence tomography (OCT) and a drug microapplication device. Methods. Using an ex vivo rabbit eyecup preparation, we studied retinotoxin effects in real-time by microperfusing small retinal areas under a transparent fluoropolymer tube. Known retinotoxic agents were applied to the retina for 5-minute periods, while changes in retinal structure, thickness, and reflectance were monitored with OCT. The OCT images of two agents with dissimilar mechanisms, cyanide and kainic acid, were compared to their structural changes seen histologically. Results. We found the actions of retinotoxic agents tested could be classified broadly into two distinct types: (1) agents that induce neuronal depolarization, such as kainic acid, causing increases in OCT reflectivity or thickness of the inner plexiform and nuclear layers, and decreased reflectivity of the outer retina; and (2) agents that disrupt mitochondrial function, such as cyanide, causing outer retinal structural changes as evidenced by a reduction in the OCT reflectivity of the photoreceptor outer segment and pigment epithelium layers. Conclusions. Retinotoxin-induced changes in retinal layer reflectivity and thickness under the microperfusion tube in OCT images closely matched the histological evidence of retinal injury. Time-lapse OCT imaging of the microperfused local retina has the potential to accelerate drug retinotoxicological screening and expand the use of OCT as an evaluation tool for preclinical animal testing. PMID:25525175

  19. Optical Flow Applied to Time-Lapse Image Series to Estimate Glacier Motion in the Southern Patagonia Ice Field

    NASA Astrophysics Data System (ADS)

    Lannutti, E.; Lenzano, M. G.; Toth, C.; Lenzano, L.; Rivera, A.

    2016-06-01

    In this work, we assessed the feasibility of using optical flow to obtain the motion estimation of a glacier. In general, former investigations used to detect glacier changes involve solutions that require repeated observations which are many times based on extensive field work. Taking into account glaciers are usually located in geographically complex and hard to access areas, deploying time-lapse imaging sensors, optical flow may provide an efficient solution at good spatial and temporal resolution to describe mass motion. Several studies in computer vision and image processing community have used this method to detect large displacements. Therefore, we carried out a test of the proposed Large Displacement Optical Flow method at the Viedma Glacier, located at South Patagonia Icefield, Argentina. We collected monoscopic terrestrial time-lapse imagery, acquired by a calibrated camera at every 24 hour from April 2014 until April 2015. A filter based on temporal correlation and RGB color discretization between the images was applied to minimize errors related to changes in lighting, shadows, clouds and snow. This selection allowed discarding images that do not follow a sequence of similarity. Our results show a flow field in the direction of the glacier movement with acceleration in the terminus. We analyzed the errors between image pairs, and the matching generally appears to be adequate, although some areas show random gross errors related to the presence of changes in lighting. The proposed technique allowed the determination of glacier motion during one year, providing accurate and reliable motion data for subsequent analysis.

  20. Influence of topography on mountain permafrost distribution through variable air and ground surface lapse rates, Yukon Territory, Canada

    NASA Astrophysics Data System (ADS)

    Lewkowicz, A. G.; Bonnaventure, P. P.

    2009-04-01

    The objective of this study is to evaluate the variability in air and ground surface temperatures in relation to topography and elevation in the southern half of the Yukon Territory, Canada. In particular, we explore the importance of persistent winter and nocturnal summer atmospheric temperature inversions on the variability in mountain climates in the region. Since permafrost is partially climatically controlled, this variability may impact its distribution. Five study areas from 60 °-65 °N are discussed: Johnson's Crossing, the Sa Dena Hes mine site, Faro, Keno and Dawson. In each area, 10-12 monitoring sites, selected to cover a range of elevations, aspects and topographic situations (e.g. ridge crests, valley bottoms, long slopes), operated in 2007-2008. They extended from below to above tree-line in and in total covered an elevation range of 300-2000 m a.s.l.. At each monitoring site, Onset Hobo Pro loggers were used to measure hourly shielded air temperature, ground surface temperature, and temperature near the top of permafrost (if present). In addition, site snow depths were monitored using miniature iButton temperature loggers arranged in a vertical array above the ground surface. Results can be described by individual area and collectively for the entire region. When grouped together, summer air temperatures show normal lapse rates that in July are close to the standard environmental lapse rate of -6.5 °C/km. In contrast, winter lapse rates are strongly inverted, with an increase of +11 °C/km in January 2008. The combined effect of these two trends cause air temperature amplitudes to decrease with elevation and a normal, but much reduced, lapse rate of about -4 °C/km. Temperatures at the ground surface in summer follow the air temperature trend within the same season and exhibit a normal lapse rate (-5 °C/km) with a higher degree of scatter that relates to the buffering effect of vegetation and the substrate. In winter, the variable effect of snow

  1. Understanding infiltration and groundwater flow at an artificial recharge facility using time-lapse gravity data

    NASA Astrophysics Data System (ADS)

    Kennedy, Jeffrey

    Groundwater provides a fundamental resource for modern life. Throughout the world, groundwater is managed by storing (recharging) it underground in natural aquifers for future withdrawal and consumptive use. In Arizona, over 4 million people benefit from managed aquifer storage, but little effort is made to track the movement of recharged water through the subsurface. Motivated by current limitations in our ability to monitor percolation and groundwater movement at the scale of a recharge facility, an effort to collect time-lapse gravity data was carried out at the Southern Avra Valley Storage and Recovery Project (SAVSARP) operated by the City of Tucson, Arizona. In addition to collecting water-level data 12 wells, there were three primary gravity experiments: (1) five continuously-recording gravity meters (2 iGrav superconducting gravity meters and 3 gPhone gravity meters) were installed semi-permanently in control buildings adjacent to the recharge basins, (2) absolute gravity measurements were made at nine locations over a 17 month period, and (3) three relative-gravity campaigns were carried out on a network of 70 stations. This large-scale controlled experiment, with known infiltration and pumping rates, resulted in one of the most comprehensive datasets of its kind. Gravity data led to several hydrologic insights, both through direct measurement and modeling. First, the infiltration rate could be estimated accurately based on the initial rate of gravity change during infiltration, regardless of the specific yield. Using two gravity meters, the depth, and therefore speed, of the wetting front beneath a recharge basin was observed, including the time at which the water table was reached. Spatial maps of gravity change from relative gravity surveys show areas where infiltration efficiency is highest, and where groundwater accumulates; storage accumulated preferentially to the west of the recharge basins, away from pumping wells. Such information would be

  2. Intense dust episodes in the Mediterranean and possible effects on atmospheric lapse rates

    NASA Astrophysics Data System (ADS)

    Hatzianastassiou, Nikos; Gkikas, Antonis; Papadimas, Christos D.; Gavrouzou, Maria

    2016-04-01

    Dust aerosols are major contributor to the atmospheric particulate matter, having significant effects on climate and weather patterns as well as on human health, not to mention others like agriculture or ocean chlorophyll. Moreover, these effects are maximized under conditions of massive dust concentration in the atmosphere, namely dust episodes or events. Such events are caused by uplifting and transport of dust from arid and semi-arid areas under favorable synoptic conditions. The Mediterranean basin, nearby to the greatest world deserts of North Africa and Middle East, frequently undergoes dust episodes. During such Mediterranean episodes, the number and mass concentration of dust is high, due to the proximity of its source areas. The dust episodes, through the direct interaction of dust primarily withthe shortwave but also with longwave radiation can lead to strong local warming in the atmosphere, possibly causing temperature inversion during daytime. The existence of such temperature inversions, associated with intense dust episodes in the Mediterranean, is the focus in this study. The methodology followed to achieve the scientific goal of the study consists in the use of a synergy of different data. This synergy enables: (i) the determination of intense dust episodes over the Mediterranean, (ii) the investigation and specification of temperature lapse rates and inversions during the days of dust episodes and (iii) the identification of vertical distribution of aerosols in the atmosphere over specific locations during the days of the episodes. These objectives are achieved through the use of data from: (i) the AERosol Robotic NETwork (AERONET) network, (ii) the Upper Air Observations (radiosondes) database of the University of Wyoming (UoW) and (iii) the European Aerosol Research Lidar Network (EARLINET) database. The study period spans the years from 2000 to 2013, constrained by the data availability of the databases. A key element of the methodology is the

  3. Identifying unsaturated soil hydraulic parameters using integrated hydrogeophysical inversion approach on time-lapse ground-penetrating radar data

    NASA Astrophysics Data System (ADS)

    Jadoon, K. Z.; Weihermüller, L.; Scharnagl, B.; Kowalsky, M. B.; Bechtold, M.; Hubbard, S. S.; Vereecken, H.; Lambot, S.

    2012-04-01

    Recently, ground-penetrating radar (GPR) has proven to have a great potential for high resolution, non-invasive mapping of the soil hydrogeophysical properties at the scale of interest. Common GPR techniques are usually based on ray-based travel time or reflection analyses to retrieve soil dielectric permittivity, which is strongly correlated to soil water content. These methods suffer, however, from two major limitations. First, only a part of the information in the GPR signal is considered (e.g., propagation time). Second, the forward model describing the radar data is subject to relatively strong simplifications with respect to electromagnetic wave propagation phenomena. These limitations typically results in errors in the reconstructed water content images and, moreover, this does not permit to exploit all information contained in the radar data. We explored an alternative method by using full-waveform hydrogeophysical inversion of time-lapse, proximal GPR data to remotely estimate the unsaturated soil hydraulic properties. The radar system is based on international standard vector network analyzer technology and a full-waveform model is used to describe wave propagation in the antenna-air-soil system, including antenna-soil interactions. A hydrodynamic model is used to constrain the inverse electromagnetic problem in reconstructing continuous vertical water content profiles. In that case the estimated parameters reduce to the soil hydraulic properties, thereby strongly reducing the dimensionality of the inverse problem. In this study, we present an application of the proposed method to a data set collected in a field experiment. The GPR model involves a full-waveform frequency-domain solution of Maxwell's equations for wave propagation in three-dimensional multilayered media. The hydrodynamic model used in this work is based on a one-dimensional solution of Richards equation and the hydrological simulator HYDRUS 1-D was used with a single- and dual

  4. Separating climate change signals into thermodynamic, lapse-rate and circulation effects: theory and application to the European summer climate

    NASA Astrophysics Data System (ADS)

    Kröner, Nico; Kotlarski, Sven; Fischer, Erich; Lüthi, Daniel; Zubler, Elias; Schär, Christoph

    2016-07-01

    Climate models robustly project a strong overall summer warming across Europe showing a characteristic north-south gradient with enhanced warming and drying in southern Europe. However, the processes that are responsible for this pattern are not fully understood. We here employ an extended surrogate or pseudo-warming approach to disentangle the contribution of different mechanisms to this response pattern. The basic idea of the surrogate technique is to use a regional climate model and apply a large-scale warming to the lateral boundary conditions of a present-day reference simulation, while maintaining the relative humidity (and thus implicitly increasing the specific moisture content). In comparison to previous studies, our approach includes two important extensions: first, different vertical warming profiles are applied in order to separate the effects of a mean warming from lapse-rate effects. Second, a twin-design is used, in which the climate change signals are not only added to present-day conditions, but also subtracted from a scenario experiment. We demonstrate that these extensions provide an elegant way to separate the full climate change signal into contributions from large-scale thermodynamic (TD), lapse-rate (LR), and circulation and other remaining effects (CO). The latter in particular include changes in land-ocean contrast and spatial variations of the SST warming patterns. We find that the TD effect yields a large-scale warming across Europe with no distinct latitudinal gradient. The LR effect, which is quantified for the first time in our study, leads to a stronger warming and some drying in southern Europe. It explains about 50 % of the warming amplification over the Iberian Peninsula, thus demonstrating the important role of lapse-rate changes. The effect is linked to an extending Hadley circulation. The CO effect as inherited from the driving GCM is shown to further amplify the north-south temperature change gradient. In terms of mean summer

  5. Entropy-Bayesian Inversion of Time-Lapse Tomographic GPR data for Monitoring Dielectric Permittivity and Soil Moisture Variations

    SciTech Connect

    Hou, Z; Terry, N; Hubbard, S S; Csatho, B

    2013-02-12

    In this study, we evaluate the possibility of monitoring soil moisture variation using tomographic ground penetrating radar travel time data through Bayesian inversion, which is integrated with entropy memory function and pilot point concepts, as well as efficient sampling approaches. It is critical to accurately estimate soil moisture content and variations in vadose zone studies. Many studies have illustrated the promise and value of GPR tomographic data for estimating soil moisture and associated changes, however, challenges still exist in the inversion of GPR tomographic data in a manner that quantifies input and predictive uncertainty, incorporates multiple data types, handles non-uniqueness and nonlinearity, and honors time-lapse tomograms collected in a series. To address these challenges, we develop a minimum relative entropy (MRE)-Bayesian based inverse modeling framework that non-subjectively defines prior probabilities, incorporates information from multiple sources, and quantifies uncertainty. The framework enables us to estimate dielectric permittivity at pilot point locations distributed within the tomogram, as well as the spatial correlation range. In the inversion framework, MRE is first used to derive prior probability distribution functions (pdfs) of dielectric permittivity based on prior information obtained from a straight-ray GPR inversion. The probability distributions are then sampled using a Quasi-Monte Carlo (QMC) approach, and the sample sets provide inputs to a sequential Gaussian simulation (SGSim) algorithm that constructs a highly resolved permittivity/velocity field for evaluation with a curved-ray GPR forward model. The likelihood functions are computed as a function of misfits, and posterior pdfs are constructed using a Gaussian kernel. Inversion of subsequent time-lapse datasets combines the Bayesian estimates from the previous inversion (as a memory function) with new data. The memory function and pilot point design takes

  6. Entropy-Bayesian Inversion of Time-Lapse Tomographic GPR data for Monitoring Dielectric Permittivity and Soil Moisture Variations

    SciTech Connect

    Hou, Zhangshuan; Terry, Neil C.; Hubbard, Susan S.

    2013-02-22

    In this study, we evaluate the possibility of monitoring soil moisture variation using tomographic ground penetrating radar travel time data through Bayesian inversion, which is integrated with entropy memory function and pilot point concepts, as well as efficient sampling approaches. It is critical to accurately estimate soil moisture content and variations in vadose zone studies. Many studies have illustrated the promise and value of GPR tomographic data for estimating soil moisture and associated changes, however, challenges still exist in the inversion of GPR tomographic data in a manner that quantifies input and predictive uncertainty, incorporates multiple data types, handles non-uniqueness and nonlinearity, and honors time-lapse tomograms collected in a series. To address these challenges, we develop a minimum relative entropy (MRE)-Bayesian based inverse modeling framework that non-subjectively defines prior probabilities, incorporates information from multiple sources, and quantifies uncertainty. The framework enables us to estimate dielectric permittivity at pilot point locations distributed within the tomogram, as well as the spatial correlation range. In the inversion framework, MRE is first used to derive prior probability density functions (pdfs) of dielectric permittivity based on prior information obtained from a straight-ray GPR inversion. The probability distributions are then sampled using a Quasi-Monte Carlo (QMC) approach, and the sample sets provide inputs to a sequential Gaussian simulation (SGSIM) algorithm that constructs a highly resolved permittivity/velocity field for evaluation with a curved-ray GPR forward model. The likelihood functions are computed as a function of misfits, and posterior pdfs are constructed using a Gaussian kernel. Inversion of subsequent time-lapse datasets combines the Bayesian estimates from the previous inversion (as a memory function) with new data. The memory function and pilot point design takes advantage of

  7. Separating climate change signals into thermodynamic, lapse-rate and circulation effects: Theory and application to the European summer climate

    NASA Astrophysics Data System (ADS)

    Kroener, Nico; Kotlarski, Sven; Fischer, Erich; Lüthi, Daniel; Zubler, Elias; Schär, Christoph

    2016-04-01

    Climate models robustly project a strong overall summer warming across Europe showing a characteristic north-south gradient with enhanced warming and drying in southern Europe. However, the processes that are responsible for this pattern are not fully understood. We here employ an extended surrogate or pseudo-warming approach to disentangle the contribution of different mechanisms to this response pattern. The basic idea of the surrogate technique is to use a regional climate model and apply a large-scale warming to the lateral boundary conditions of a present-day reference simulation, while maintaining the relative humidity (and thus implicitly increasing the specific moisture content). In comparison to previous studies, our approach includes two important extensions: First, different vertical warming profiles are applied in order to separate the effects of a mean warming from lapse-rate effects. Second, a twin-design is used, in which the temperature change signal is not only added to present-day conditions, but also subtracted from a scenario experiment. We use the regional climate model COSMO-CLM with a grid spacing of approximately 50 km (EURO-CORDEX EUR-44 setup) using transient simulations (1950-2100) with the RCP8.5 emissions scenario. We demonstrate that the aforementioned extensions provide an elegant way to separate the full climate change signal into contributions from large-scale thermodynamics (LST), lapse-rate (LR) and large-scale circulation (LSC). In our framework the LSC effect also includes effects due to changes in land-sea contrast and the spatial variations of the SST warming pattern. We find that the LST effect yields a large-scale warming across Europe without any distinct latitudinal gradient. The LR effect, which is quantified for the first time in our study, leads to a stronger warming and some drying in Southern Europe. It explains about 50% of the warming amplification over the Iberian Peninsula, thus demonstrating the important role of

  8. Modeling of time-lapse seismic reflection data from CO2 sequestration at West Pearl Queen Field

    NASA Astrophysics Data System (ADS)

    Bartel, L. C.; Haney, M. M.; Aldridge, D. F.; Symons, N. P.; Elbring, G. J.

    2006-12-01

    Sequestration of CO2 in depleted oil reservoirs, saline aquifers, or unminable coal sequences may prove to be an economical and environmentally safe means for long-term removal of carbon from the atmosphere. Requirements for storage of CO2 in subsurface geologic repositories (e.g., less than 0.1% per year leakage) pose significant challenges for geophysical remote sensing techniques. The many issues relevant to successful CO2 sequestration (volume in place, migration, leakage rate) require improved understanding of the advantages and pitfalls of potential monitoring methods. Advanced numerical modeling of time-lapse seismic reflection responses offers a controlled environment for testing hypotheses and exploring alternatives. The U.S. Department of Energy has conducted CO2 sequestration and monitoring tests at West Pearl Queen (WPQ) field in southeastern New Mexico. High-quality 9C/3D seismic reflection data were acquired before and after injection of ~2 kt of CO2 into a depleted sandstone unit at ~4200 ft depth. Images developed from time- lapse seismic data appear to reveal strong reflectivity changes attributed to displacement of brine by CO2. We are pursuing seismic numerical modeling studies with the goal of understanding and assessing the reliability and robustness of the time-lapse reflection responses. A 3D time-domain finite-difference isotropic elastic wave propagation algorithm generates realistic synthetic data. With this capability, we examine how various types of errors and noise in the 4D data degrade the ability to image a deep CO2 plume. Source/receiver sampling, subsurface illumination, correlated geologic heterogeneity, and static shifts are considered. As a result, we are able to make quantitative estimates of the tolerable errors for monitoring CO2 injection at WPQ field. Future plans include incorporating 3D poroelastic wave propagation modeling into the analysis. Sandia National Laboratories is a multiprogram science and engineering facility

  9. Rapid and retrievable recording of big data of time-lapse 3D shadow images of microbial colonies.

    PubMed

    Ogawa, Hiroyuki; Nasu, Senshi; Takeshige, Motomu; Saito, Mikako; Matsuoka, Hideaki

    2015-01-01

    We formerly developed an automatic colony count system based on the time-lapse shadow image analysis (TSIA). Here this system has been upgraded and applied to practical rapid decision. A microbial sample was spread on/in an agar plate with 90 mm in diameter as homogeneously as possible. We could obtain the results with several strains that most of colonies appeared within a limited time span. Consequently the number of colonies reached a steady level (Nstdy) and then unchanged until the end of long culture time to give the confirmed value (Nconf). The equivalence of Nstdy and Nconf as well as the difference of times for Nstdy and Nconf determinations were statistically significant at p < 0.001. Nstdy meets the requirement of practical routines treating a large number of plates. The difference of Nstdy and Nconf, if any, may be elucidated by means of retrievable big data. Therefore Nconf is valid for official documentation. PMID:25975590

  10. Accurate Enumeration of Aspergillus brasiliensis in Hair Color and Mascara by Time-Lapse Shadow Image Analysis.

    PubMed

    Ogawa, Hiroyuki; Matsuoka, Hideaki; Saito, Mikako

    2015-01-01

    The growth of black mold (Aspergillus brasiliensis) in black-colored samples such as hair color and mascara was measured with an automatic count system based on time-lapse shadow image analysis (TSIA). A. brasiliensis suspended in a lecithin and polysorbate (LP) solution of each sample (hair color or mascara) was spread on a potato dextrose agar medium plate containing LP. The background image darkness of the agar plate could be adjusted to attain accurate colony counts. 95 colonies in hair color and 22 colonies in mascara could be automatically determined at 48 h. The accuracy of the colony counts could be confirmed from the timelapse image data. In contrast, conventional visual counting at a specified time could not determine the number of colonies or led to false colony counts.

  11. Rapid and retrievable recording of big data of time-lapse 3D shadow images of microbial colonies.

    PubMed

    Ogawa, Hiroyuki; Nasu, Senshi; Takeshige, Motomu; Saito, Mikako; Matsuoka, Hideaki

    2015-05-15

    We formerly developed an automatic colony count system based on the time-lapse shadow image analysis (TSIA). Here this system has been upgraded and applied to practical rapid decision. A microbial sample was spread on/in an agar plate with 90 mm in diameter as homogeneously as possible. We could obtain the results with several strains that most of colonies appeared within a limited time span. Consequently the number of colonies reached a steady level (Nstdy) and then unchanged until the end of long culture time to give the confirmed value (Nconf). The equivalence of Nstdy and Nconf as well as the difference of times for Nstdy and Nconf determinations were statistically significant at p < 0.001. Nstdy meets the requirement of practical routines treating a large number of plates. The difference of Nstdy and Nconf, if any, may be elucidated by means of retrievable big data. Therefore Nconf is valid for official documentation.

  12. Validation of snow depth reconstruction from lapse-rate webcam images against terrestrial laser scanner measurements in centrel Pyrenees

    NASA Astrophysics Data System (ADS)

    Revuelto, Jesús; Jonas, Tobias; López-Moreno, Juan Ignacio

    2015-04-01

    Snow distribution in mountain areas plays a key role in many processes as runoff dynamics, ecological cycles or erosion rates. Nevertheless, the acquisition of high resolution snow depth data (SD) in space-time is a complex task that needs the application of remote sensing techniques as Terrestrial Laser Scanning (TLS). Such kind of techniques requires intense field work for obtaining high quality snowpack evolution during a specific time period. Combining TLS data with other remote sensing techniques (satellite images, photogrammetry…) and in-situ measurements could represent an improvement of the available information of a variable with rapid topographic changes. The aim of this study is to reconstruct daily SD distribution from lapse-rate images from a webcam and data from two to three TLS acquisitions during the snow melting periods of 2012, 2013 and 2014. This information is obtained at Izas Experimental catchment in Central Spanish Pyrenees; a catchment of 33ha, with an elevation ranging from 2050 to 2350m a.s.l. The lapse-rate images provide the Snow Covered Area (SCA) evolution at the study site, while TLS allows obtaining high resolution information of SD distribution. With ground control points, lapse-rate images are georrectified and their information is rasterized into a 1-meter resolution Digital Elevation Model. Subsequently, for each snow season, the Melt-Out Date (MOD) of each pixel is obtained. The reconstruction increases the estimated SD lose for each time step (day) in a distributed manner; starting the reconstruction for each grid cell at the MOD (note the reverse time evolution). To do so, the reconstruction has been previously adjusted in time and space as follows. Firstly, the degree day factor (SD lose/positive average temperatures) is calculated from the information measured at an automatic weather station (AWS) located in the catchment. Afterwards, comparing the SD lose at the AWS during a specific time period (i.e. between two TLS

  13. Large-scale time-lapse microscopy of Oct4 expression in human embryonic stem cell colonies.

    PubMed

    Bhadriraju, Kiran; Halter, Michael; Amelot, Julien; Bajcsy, Peter; Chalfoun, Joe; Vandecreme, Antoine; Mallon, Barbara S; Park, Kye-Yoon; Sista, Subhash; Elliott, John T; Plant, Anne L

    2016-07-01

    Identification and quantification of the characteristics of stem cell preparations is critical for understanding stem cell biology and for the development and manufacturing of stem cell based therapies. We have developed image analysis and visualization software that allows effective use of time-lapse microscopy to provide spatial and dynamic information from large numbers of human embryonic stem cell colonies. To achieve statistically relevant sampling, we examined >680 colonies from 3 different preparations of cells over 5days each, generating a total experimental dataset of 0.9 terabyte (TB). The 0.5 Giga-pixel images at each time point were represented by multi-resolution pyramids and visualized using the Deep Zoom Javascript library extended to support viewing Giga-pixel images over time and extracting data on individual colonies. We present a methodology that enables quantification of variations in nominally-identical preparations and between colonies, correlation of colony characteristics with Oct4 expression, and identification of rare events.

  14. Stimulant Treatment Reduces Lapses in Attention among Children with ADHD: The Effects of Methylphenidate on Intra-Individual Response Time Distributions

    ERIC Educational Resources Information Center

    Spencer, Sarah V.; Hawk, Larry W., Jr.; Richards, Jerry B.; Shiels, Keri; Pelham, William E., Jr.; Waxmonsky, James G.

    2009-01-01

    Recent research has suggested that intra-individual variability in reaction time (RT) distributions of children with ADHD is characterized by a particularly large rightward skew that may reflect lapses in attention. The purpose of the study was to provide the first randomized, placebo-controlled test of the effects of the stimulant methylphenidate…

  15. Monitoring channel head erosion processes in response to an artificially induced abrupt base level change using time-lapse photography 2301

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Headcut and channel extension in response to an abrupt base level change in 2004 of approximately 1m was studied in a 1.29 ha semiarid headwater drainage on the Walnut Gulch Experimental Watershed (WGEW) in southeastern Arizona, USA. Field observations and time-lapse photography were coupled with hy...

  16. Monitoring the geothermal fluid using time lapse electrical resistivity tomography: The Pisciarelli fumarolic field test site (Campi Flegrei, South Italy)

    NASA Astrophysics Data System (ADS)

    Fedele, Alessandro; Giulia Di Giuseppe, Maria; Troiano, Antonio; Somma, Reanto; Caputo, Teresa; Patella, Domenico; Troise, Claudia; De Natale, Giuseppe

    2015-04-01

    Pisciarelli area is a fumarolic field subject to very short time morphological changes. A number of critical problems affect this area, i.e. increase of temperature of the fumaroles above the average background temperature, local seismicity and occurrence of fumaroles mixed with jets of boiling water. The presence of a very shallow aquifer seem to have the control on the behavior and composition of the fumaroles. This fumarolic field is still largely unknown regarding geophysical surveys mainly because of its limited space, surrounded on the eastern side by intense urbanization inside the large Agnano crater (Troiano et al. 2014). Currently is mainly affected by geochemical, thermal and seismic monitoring which may not fully explain the behaviour of fluids surface. Many monitoring or time lapse (TL) applications are discussed in literature (e.g., White, 1994; Daily et al., 1995; Barker and Moore, 1998; Ramirez and Daily, 2001; Carter, 2002; Slater et al., 2002; Singha and Gorelick, 2005; Cassiani et al., 2006; Swarzenski et al., 2006; de Franco et al., 2009). However all these experiments are devoted to the use of the ERT for tracer tests or in contaminant hydrology and are characterized by a short monitoring period due to the complexity and problems of long-time instrument maintenance. We propose and present a first approach of a geophysical monitoring by time lapse electrical resistivity in a fumarolic field. The profiles were acquired in January 2013, in January, March, May, July, September and November 2014 respectively. They cross the Pisciarelli area following approximately the NS direction and were characterized by a 2.5 m electrode spacing and maximum penetration depth of about 20 m. and will supply fundamental evidences on the possible seasonal resistivity fluctuations or if the resistivity changes are indicative of an increase in volcanic gases present in the hydrothermal system.

  17. Technical Note: Semi-automated effective width extraction from time-lapse RGB imagery of a remote, braided Greenlandic river

    NASA Astrophysics Data System (ADS)

    Gleason, C. J.; Smith, L. C.; Finnegan, D. C.; LeWinter, A. L.; Pitcher, L. H.; Chu, V. W.

    2015-06-01

    River systems in remote environments are often challenging to monitor and understand where traditional gauging apparatus are difficult to install or where safety concerns prohibit field measurements. In such cases, remote sensing, especially terrestrial time-lapse imaging platforms, offer a means to better understand these fluvial systems. One such environment is found at the proglacial Isortoq River in southwestern Greenland, a river with a constantly shifting floodplain and remote Arctic location that make gauging and in situ measurements all but impossible. In order to derive relevant hydraulic parameters for this river, two true color (RGB) cameras were installed in July 2011, and these cameras collected over 10 000 half hourly time-lapse images of the river by September of 2012. Existing approaches for extracting hydraulic parameters from RGB imagery require manual or supervised classification of images into water and non-water areas, a task that was impractical for the volume of data in this study. As such, automated image filters were developed that removed images with environmental obstacles (e.g., shadows, sun glint, snow) from the processing stream. Further image filtering was accomplished via a novel automated histogram similarity filtering process. This similarity filtering allowed successful (mean accuracy 79.6 %) supervised classification of filtered images from training data collected from just 10 % of those images. Effective width, a hydraulic parameter highly correlated with discharge in braided rivers, was extracted from these classified images, producing a hydrograph proxy for the Isortoq River between 2011 and 2012. This hydrograph proxy shows agreement with historic flooding observed in other parts of Greenland in July 2012 and offers promise that the imaging platform and processing methodology presented here will be useful for future monitoring studies of remote rivers.

  18. Time-lapse Monitoring of Two-dimensional Non-uniform Unsaturated Flow Processes Using Ground Penetrating Radar

    NASA Astrophysics Data System (ADS)

    Lytle, B. A.; Mangel, A. R.; Moysey, S. M.

    2015-12-01

    Unsaturated flow in the vadose zone often manifests as preferential flow resulting in transport of water and solutes through the soil much faster than would occur for uniform matrix flow. Time-lapse ground-penetrating radar (GPR) monitoring shows significant potential for identifying the presence of non-uniform flow and quantitative monitoring of the hydrologic response of a soil system. We investigate non-uniform flow in the vadose zone for an infiltration experiment performed in a 60 cm deep sand-filled tank that is continuously monitored with 1000 MHz reflection GPR. During the experiment, 100 constant offset and 300 common mid-point (CMP) time-lapse radar profiles were collected using an automated gantry system to rapidly position the antennas, allowing for a set of 1 constant offset and 3 CMP profiles to be collected every 13 seconds. The constant offset profiles were interpreted to evaluate spatial and temporal changes of reflected arrivals over the course of the experiment, whereas the CMPs were used to estimate the initial EM wave velocity in the tanks using a normal moveout analysis. Changes in traveltime to a static reflector were used to estimate spatial changes in velocity and to create two-dimensional velocity models. The GPR data were then migrated using the estimated 2D velocity model to improve GPR reflection images, which could then be interpreted to identify evidence of non-uniform flow phenomena. To verify the approach, the methodology was also applied to GPR data simulated using transient water contents generated by the unsaturated flow simulator HYDRUS2D given lab-measured hydraulic properties for the soil. For both the empirical and simulated data, we found that the 2D velocity analysis was effective in monitoring changes in the wetting front and that migration of the reflection profiles was able to improve the interpretation of non-uniform flow.

  19. Time-lapse ERT and DTS for seasonal and short-term monitoring of an alpine river hyporheic zone

    NASA Astrophysics Data System (ADS)

    Boaga, Jacopo; Laura, Busato; Mariateresa, Perri; Giorgio, Cassiani

    2016-04-01

    The hyporheic zone (HZ) is the area located beneath and adjacent to rivers and streams, where the interactions between surface water and groundwater take place. This complex physical domain allows the transport of several substances from a stream to the unconfined aquifer below, and vice versa, thus playing a fundamental role in the river ecosystem. The importance of the hyporheic zone makes its characterization a goal shared by several disciplines, which range from applied geophysics to biogeochemistry, from hydraulics to ecology. The frontier field of HZ characterization stays in applied non-invasive methodologies as Electrical Resistivity Tomography - ERT - and Distributed Temperature Sensing - DTS. ERT is commonly applied in cross-well configuration or with a superficial electrodes deployment while DTS is used in hydro-geophysics in the last decade, revealing a wide applicability to the typical issues of this field of study. DTS for hydro-geophysics studies is based on Raman scattering and employs heat as tracer and uses a fiber-optic cable to acquire temperature values. We applied both techniques for an alpine river case studies located in Val di Sole, TN, Italy. The collected measurements allow high-resolution characterization of the hyporheic zone, overcoming the critical problem of invasive measurements under riverbeds. In this work, we present the preliminary results regarding the characterization of the hyporheic zone of the alpine river obtained combining ERT and DTS time-lapse measurements. The data collection benefits from an innovative instrumentation deployment, which consists of both an ERT multicore cable and a DTS fiber-optic located in two separated boreholes drilled 5m under the watercourse and perpendicular to it. In particular we present the first year monitoring results and a short time-lapse monitoring experiment conducted during summer 2015. The site and the results here described are part of the EU FP7 CLIMB (Climate Induced Changes on the

  20. Scattering and anelastic attenuation of seismic energy in Northeast India using the multiple lapse time window analysis

    NASA Astrophysics Data System (ADS)

    Padhy, S.

    2010-12-01

    We investigated the intrinsic dissipation and scattering properties of the lithosphere beneath the northeast India by using the seismic waves recorded by a network of ten broadband stations in the region with hypocentral distances ranging from 31 to 200 km. First, we determined coda Q from the amplitude decay rate of the S-wave coda envelopes in five frequency bands from 1.5 to 24 Hz based on single scattering theory and QS by means of the coda normalization method. Assuming a frequency dependent power-law of the form , we found a low Q0 (Q0 < 200) and a high frequency dependent parameter n (n ~ 1) for the whole study area, which indicates that the lithosphere beneath NE India is seismically active and heterogeneous. Then we applied the multiple lapse time window (MLTW) analysis in the hypothesis of velocity and scattering coefficients constant with depth. We calculated the variation of integrated spectral energy with hypocentral distance for three consecutive lapse time windows (0-15, 15-30, 30-45 sec), starting from the onset of the S-wave arrival. The spectral energies over an octave bandwidth with central frequencies at 1.5, 3, 6, 12 and 24 Hz were calculated to obtain the frequency dependence of attenuation parameters. The results show that intrinsic absorption dominates over scattering in the attenuation process at high frequencies. However, in the hypothesis of uniform medium, the estimates of scattering attenuations obtained by MLTW analysis are overestimated. So the present results are correct to a first order approximation. To obtain more reliable and unbiased estimates of the attenuation parameters and their frequency dependences by considering the probable influence of crustal-mantel heterogeneities, we analyze the events by using the depth dependent MLTW method.

  1. Evaluation of a Technique for Downscaling Climate-Model Output in Mountainous Terrain Using Local Topographic Lapse Rates

    NASA Astrophysics Data System (ADS)

    Praskievicz, S. J.

    2015-12-01

    One of the challenges in using general circulation model (GCM) output is the need to downscale beyond the model's coarse spatial grid in order to infer climate at any particular location. Traditionally, downscaling has been achieved either dynamically, through regional climate models (RCMs), or statistically, through empirical relationships between predictor variables in the GCM and observed variables. In mountainous terrain, elevation is one of the primary controls on temperature and precipitation at the local scale, which provides the potential for topographic variables to be used to adjust climate-model output. Here, local topographic lapse rates (LTLR) were estimated from gridded climate data for the Pacific Northwest, and those lapse rates were used to downscale RCM output. Skill scores were calculated for the LTLR-downscaled climate-model output relative to an existing set of model output downscaled using the well-established statistical downscaling technique of bias-corrected constructed analogs (BCCA). Spatial and temporal patterns in forecast skill and in bias of the LTLR downscaling method were also examined. The results indicate that the LTLR method performs well in the mountainous study region relative to the BCCA method. There is variability in the forecast skill, however, most notably the LTLR downscaling technique's better performance in the eastern part of the study region for temperature and in the western part of the study region for precipitation. LTLR downscaling offers a promising method for downscaling climate-model output in regions in which elevation is a strong control on climate, particularly for studying impacts of past or future climate change.

  2. Application of an extended Kalman filter approach to inversion of time-lapse electrical resistivity imaging data for monitoring recharge

    NASA Astrophysics Data System (ADS)

    Nenna, Vanessa; Pidlisecky, Adam; Knight, Rosemary

    2011-10-01

    We apply an extended Kalman filter (EKF) approach to inversion of time-lapse electrical resistivity imaging (ERI) field data. The EKF is a method of time series signal processing that incorporates both a state evolution model, describing changes in the physical system, and an observation model, incorporating the physics of the electrical resistivity measurement. We test the feasibility of using an EKF approach to inverting ERI data collected with 2-D surface array geometries. As a first test, we invert synthetic data generated using a simulated recharge event and water saturation distributions converted to electrical conductivity values using an Archie's law relationship. In the synthetic example we demonstrate the impact that the noise structure of the state evolution and the regularization weight have on EKF-estimated model parameters and errors. We then apply the method to inversion of field data collected to monitor changes in electrical conductivity beneath a recharge pond that is part of an aquifer storage and recovery project in northern California. Using lines of electrodes buried at a depth of 0.25 m when the base of the pond is dry, we monitor the wetting front associated with the diversion of stormflow runoff to the pond. Using field data, we demonstrate that by oversampling in time, we are able to apply the so-called random walk model for the state evolution and to build the model of observation noise directly from collected data. EKF-estimated values track changes in conductivity associated with both increasing water content in subsurface sediments and changes in the properties of the pore water, showing the method is a feasible approach for inversion of time-lapse ERI field data.

  3. Time-Lapse Micro-Tomography Measurements and Determination of Effective Transport Properties of Snow Metamorphism Under Advective Conditions

    NASA Astrophysics Data System (ADS)

    Ebner, P. P.; Grimm, S.; Steen-Larsen, H. C.; Schneebeli, M.; Steinfeld, A.

    2014-12-01

    The metamorphism of snow under advective air flow, with and without temperature gradient, was never experimentally investigated. We developed a new sample holder where metamorphism under advective conditions can be observed and measured using time-lapse micro-tomography [1]. Long-term experiments were performed and direct pore-level simulation (DPLS) [2,3] was directly applied on the extracted 3D digital geometry of the snow to calculate the effective transport properties by solving the governing fluid flow equations. The results showed no effect of isothermal advection, compared to rates typical for isothermal metamorphism. Appling a temperature gradient, the results showed increased snow metamorphism compared to rates typical for temperature gradient metamorphism. However, for both cases a change in the isotopic composition in the air as well as in the snow sample could be observed. These measurements could be influential to better understand snow-air exchange processes relevant for atmospheric chemistry and isotopic composition. REFERENCES[1] Ebner P. P., Grimm S., Schneebeli M., and Steinfeld A.: An instrumented sample holder for time-lapse micro-tomography measurements of snow under advective airflow. Geoscientific Instrumentation, Methods and Data Systems 4(2014), 353-373. [2] Zermatten E., Haussener S., Schneebeli M., and Steinfeld A.: Tomography-based determination of permeability and Dupuit-Forchheimer coefficient of characteristic snow samples. Journal of Glaciology 57(2011), 811-816. [3] Zermatten E., Schneebeli M., Arakawa H., and Steinfeld A.: Tomography-based determination of porosity, specific area and permeability of snow and comparison with measurements. Cold Regions Science and Technology 97 (2014), 33-40. Fig. 1: 3-D surface rendering of a refrozen wet snow sample with fluid flow streamline.

  4. Time-Lapse Imaging of the Dynamics of CNS Glial-Axonal Interactions In Vitro and Ex Vivo

    PubMed Central

    Ioannidou, Kalliopi; Anderson, Kurt I.; Strachan, David

    2012-01-01

    Background Myelination is an exquisite and dynamic example of heterologous cell-cell interaction, which consists of the concentric wrapping of multiple layers of oligodendrocyte membrane around neuronal axons. Understanding the mechanism by which oligodendrocytes ensheath axons may bring us closer to designing strategies to promote remyelination in demyelinating diseases. The main aim of this study was to follow glial-axonal interactions over time both in vitro and ex vivo to visualize the various stages of myelination. Methodology/Principal Findings We took two approaches to follow myelination over time: i) time-lapse imaging of mixed CNS myelinating cultures generated from mouse spinal cord to which exogenous GFP-labelled murine cells were added, and ii) ex vivo imaging of the spinal cord of shiverer (Mbp mutant) mice, transplanted with GFP-labelled murine neurospheres. We demonstrate that oligodendrocyte-axonal interactions are dynamic events with continuous retraction and extension of oligodendroglial processes. Using cytoplasmic and membrane-GFP labelled cells to examine different components of the myelin-like sheath, we provide evidence from time-lapse fluorescence microscopy and confocal microscopy that the oligodendrocytes' cytoplasm-filled processes initially spiral around the axon in a corkscrew-like manner. This is followed subsequently by focal expansion of the corkscrew process to form short cuffs, which then extend longitudinally along the axons. We predict from this model that these spiral cuffs must extend over each other first before extending to form internodes of myelin. Conclusion These experiments show the feasibility of visualizing the dynamics of glial-axonal interaction during myelination over time. Moreover, these approaches complement each other with the in vitro approach allowing visualization of an entire internodal length of myelin and the ex vivo approach validating the in vitro data. PMID:22303455

  5. Calibration of a distributed ablation model for Zhadang Glacier, Tibetan Plateau,using a time lapse camera system

    NASA Astrophysics Data System (ADS)

    Schneider, C.; Huintjes, E.; Bhattacharya, A.; Sauter, T.; Yang, W.; Bolch, T.; Pieczonka, T.; Maussion, F.; Kang, S.; Buchroithner, M.; Scherer, D.; Yao, T.

    2011-12-01

    A 1-dimensional energy balance model for calculation of snow melt including sub-surface refreezing has been applied in a simplified version for distributed ablation modeling on Zhadang Glacier, Nyainqentanglha Range, Tibetan Plateau. The model includes a distributed computation of short-wave radiation on a digital elevation model. Reduction of short-wave radiation due to cloud cover has been accounted for by comparing calculated radiation against measurements at an automatic weather station (AWS) on the glacier. Air temperature was distributed using the lapse rate as derived from AWS measurements in different altitudes along the Zhadang Valley. Specific humidity and wind speed were assumed to be spatially invariant. Also, ice temperature in spring at 10 m depth was assumed to be equal all over the glacier. In the same way, accumulation as measured at the AWS using an ultra-sonic ranging system was assumed to be the same for the whole glacier surface. Snow accumulation was corrected using daily imagery obtained from an automatic time lapse camera system installed outside the glacier. The same time series of pictures allows for detailed spatial and temporal observation of the transient snow line. Gaps in AWS data are filled by downscaling of the output of WRF numerical atmospheric model output to the AWS location on the glacier. The runs of the ablation model are initialized using spatially distributed snow depth measured at a series of ablation stakes on the glacier. From the model results the location of the transient snow line can be precisely located. The findings are compared to the transient snow line as derived from the picture series. Besides the possibility of post-calibrating the spatially distributed ablation model, the results of this approach also allow for identifying further relevant spatial processes that are not yet considered.

  6. Technical Note: Semi-automated classification of time-lapse RGB imagery for a remote Greenlandic river

    NASA Astrophysics Data System (ADS)

    Gleason, C. J.; Smith, L. C.; Finnegan, D. C.; LeWinter, A. L.; Pitcher, L. H.; Chu, V. W.

    2015-01-01

    River systems in remote environments are often challenging to monitor and understand where traditional gauging apparatus are difficult to install or where safety concerns prohibit field measurements. In such cases, remote sensing, especially terrestrial time lapse imaging platforms, offer a means to better understand these fluvial systems. One such environment is found at the proglacial Isortoq River in southwest Greenland, a river with a constantly shifting floodplain and remote Arctic location that make gauging and in situ measurements all but impossible. In order to derive relevant hydraulic parameters for this river, two RGB cameras were installed in July of 2011, and these cameras collected over 10 000 half hourly time-lapse images of the river by September of 2012. Existing approaches for extracting hydraulic parameters from RGB imagery require manual or supervised classification of images into water and non-water areas, a task that was impractical for the volume of data in this study. As such, automated image filters were developed that removed images with environmental obstacles (e.g. shadows, sun glint, snow) from the processing stream. Further image filtering was accomplished via a novel automated histogram similarity filtering process. This similarity filtering allowed successful (mean accuracy 79.6%) supervised classification of filtered images from training data collected from just 10% of those images. Effective width, a hydraulic parameter highly correlated with discharge in braided rivers, was extracted from these classified images, producing a hydrograph proxy for the Isortoq River between 2011 and 2012. This hydrograph proxy shows agreement with historic flooding observed in other parts of Greenland in July 2012 and offers promise that the imaging platform and processing methodology presented here will be useful for future monitoring studies of remote rivers.

  7. Stochastic inversion of time-lapse geophysical data to characterize the vadose zone at the Arrenaes field site (Denmark)

    NASA Astrophysics Data System (ADS)

    Marie, S.; Irving, J. D.; Looms, M. C.; Nielsen, L.; Holliger, K.

    2011-12-01

    Geophysical methods such as ground-penetrating radar (GPR) can provide valuable information on the hydrological properties of the vadose zone. In particular, there is evidence to suggest that the stochastic inversion of such data may allow for significant reductions in uncertainty regarding subsurface van-Genuchten-Mualem (VGM) parameters, which characterize unsaturated hydrodynamic behaviour as defined by the combination of the water retention and hydraulic conductivity functions. A significant challenge associated with the use of geophysical methods in a hydrological context is that they generally exhibit an indirect and/or weak sensitivity to the hydraulic parameters of interest. A novel and increasingly popular means of addressing this issue involves the acquisition of geophysical data in a time-lapse fashion while changes occur in the hydrological condition of the probed subsurface region. Another significant challenge when attempting to use geophysical data for the estimation of subsurface hydrological properties is the inherent non-linearity and non-uniqueness of the corresponding inverse problems. Stochastic inversion approaches have the advantage of providing a comprehensive exploration of the model space, which makes them ideally suited for addressing such issues. In this work, we present the stochastic inversion of time-lapse zero-offset-profile (ZOP) crosshole GPR traveltime data, collected during a forced infiltration experiment at the Arreneas field site in Denmark, in order to estimate subsurface VGM parameters and their corresponding uncertainties. We do this using a Bayesian Markov-chain-Monte-Carlo (MCMC) inversion approach. We find that the Bayesian-MCMC methodology indeed allows for a substantial refinement in the inferred posterior parameter distributions of the VGM parameters as compared to the corresponding priors. To further understand the potential impact on capturing the underlying hydrological behaviour, we also explore how the posterior

  8. Application of time-lapse seismic shear wave inversion to characterize the stimulated rock volume in the Niobrara and Codell Reservoirs, Wattenberg Field, CO

    NASA Astrophysics Data System (ADS)

    Mueller, Staci K.

    Advances in horizontal drilling and completions in shale reservoirs have allowed operators to extract hydrocarbons within low permeability reservoirs that were once impossible to access. The integration of time-lapse multicomponent seismic data with engineering technology aids in the characterization of these reservoirs through monitoring. This thesis investigates the fast and slow shear wave components of a time-lapse, nine-component seismic survey to determine the stimulated volume in the Niobrara and Codell reservoir intervals. The time-lapse post-stack inversions of the shear wave datasets provide insight into how the shear impedance is affected by hydraulic fracturing through the work of cross-equalized seismic shear impedances and shear wave splitting. The study area is the Wishbone Section within Wattenberg Field, CO, which is owned and operated by Anadarko Petroleum Corporation and contains eleven horizontal wells that vary in spacing and completion methods. Shear seismic data sets were acquired over this section before and after hydraulic stimulation. The time-lapse shear seismic inversions show an increase in fast shear wave velocity and a decrease in slow shear velocity after stimulation. The sensitivity of both the fast and slow shear seismic to stimulation correlates with the net pressure trends at each stage. Borehole image log interpretations are compared to the inversions to analyze the affect that a complex fracture network has on induced anisotropy. The stimulated volume for the Niobrara and Codell reservoir intervals are now more accurately defined. Time-lapse shear seismic is the only technology that is able to define the stimulated rock volume and reveal areas that are not being accessed by the wells currently drilled. These areas are now detected within the Wishbone section, and may be candidates for future re-completion.

  9. Characteristics of liquid product from the pyrolysis of waste plastic mixture at low and high temperatures: Influence of lapse time of reaction

    SciTech Connect

    Lee, Kyong-Hwan . E-mail: khwanlee@kier.re.kr; Shin, Dae-Hyun

    2007-07-01

    Pyrolysis of a waste plastic mixture (high-density polyethylene: low-density polyethylene: polypropylene: polystyrene = 3:2:3:1) into a liquid product was carried out in a stirred semi-batch reactor at low (350 deg. C) and high (400 deg. C) temperatures. The effect of lapse time of reaction in the reactor and also degradation temperature on the characteristics of the liquid product from pyrolysis of the mixture was investigated. Liquid products were described by cumulative amount distribution, paraffin, olefin, naphthene and aromatic (PONA) distribution and molecular weight distribution. Their characteristic was quite differed with a lapse time of reaction and also at a low and high degradation temperatures, because of the different physicochemical properties of the plastic types in the mixture. With increase of lapse time of reaction, the order for the main products in PONA components obtained at 350 deg. C was firstly aromatic products and then olefin products, while at 400 deg. C the order was firstly aromatic products, then olefin products and finally paraffin products. The experiments also showed from the molecular weight distribution of liquid PONA components that the paraffin and olefin products had a wide distribution by mainly random scission of polymer, but in the case of olefin products were produced by an end-chain scission mechanism as well as random scission mechanism, as evidenced by much more light olefin products. This phenomenon was evident at a higher degradation temperature. Also, both the light olefin and naphthene products with a molecular weight of around 120, as a main product, showed a similar trend as a function of lapse time, which had a maximum fraction at 343 min (at 350 deg. C) and 83 min (at 400 deg. C). Among PONA components, the highest concentrations of aromatic products were obtained with a molecular weight of around 100 at the fastest lapse time of reaction, regardless of degradation temperature. It was concluded that the

  10. Analysis of embryo morphokinetics, multinucleation and cleavage anomalies using continuous time-lapse monitoring in blastocyst transfer cycles

    PubMed Central

    2014-01-01

    Background Time-lapse imaging combined with embryo morphokinetics may offer a non-invasive means for improving embryo selection. Data from clinics worldwide are necessary to compare and ultimately develop embryo classifications models using kinetic data. The primary objective of this study was to determine if there were kinetic differences between embryos with limited potential and those more often associated with in vitro blastocyst formation and/or implantation. We also wanted to compare putative kinetic markers for embryo selection as proposed by other laboratories to what we were observing in our own laboratory setting. Methods Kinetic data and cycle outcomes were retrospectively analyzed in patients age 39 and younger with 7 or more zygotes cultured in the Embryoscope. Timing of specific events from the point of insemination were determined using time-lapse (TL) imaging. The following kinetic markers were assessed: time to syngamy (tPNf), t2, time to two cells (c), 3c (t3), 4c ( t4), 5c (t5), 8c (t8), morula (tMor), start of blastulation (tSB); tBL, blastocyst (tBL); expanded blastocyst (tEBL). Durations of the second (cc2) and third (cc3) cell cycles, the t5-t2 interval as well as time to complete synchronous divisions s1, s2 and s3 were calculated. Incidence and impact on development of nuclear and cleavage anomalies were also assessed. Results A total of 648 embryos transferred on day 5 were analyzed. The clinical pregnancy and implantation rate were 72% and 50%, respectively. Morphokinetic data showed that tPNf, t2,t4, t8, s1, s2,s3 and cc2 were significantly different in embryos forming blastocysts (ET or frozen) versus those with limited potential either failing to blastulate or else forming poor quality blastocysts ,ultimately discarded. Comparison of embryo kinetics in cycles with all embryos implanting (KID+) versus no implantation (KID-) suggested that markers of embryo competence to implant may be different from ability to form a blastocyst. The

  11. 4D Time-Lapse Seismic Analysis of Active Gas Seepage Systems on the Vestnesa Ridge, Offshore W-Svalbard

    NASA Astrophysics Data System (ADS)

    Bunz, S.; Hurter, S.; Plaza-Faverola, A. A.; Mienert, J.

    2014-12-01

    Active gas venting occurs on the Vestnesa Ridge, an elongated sediment drift north of the Molloy Transform and just east of the Molloy Ridge, one of the shortest segments of the slow spreading North-Atlantic Ridge system. The crest of the Vestnesa Ridge at water depth between 1200-1300 m is pierced with fluid-flow features. Seafloor pockmarks vary in size up to 1 km in diameter with significant morphological features consisting of small ridges, diapiric structures and small pits. Detailed hydro-acoustic surveying shows that gas mostly emanates from the small-scale pits, where also hydrates have been recovered by sediment sampling. High-resolution P-Cable 3D seismic data acquired in 2012 show vertical focused fluid flow features beneath the seafloor pockmarks. These co-called chimneys extend down to the free-gas zone underneath a bottom-simulating reflection (BSR). Here, they link up with small fault systems that might provide pathways to the deeper subsurface. The chimney features show a high variability in their acoustic characteristics with alternating blanked or masked zones and high-amplitude anomalies scattered through the whole vertical extent of the chimneys. The amplitude anomalies indicate high-impedance contrasts due to the likely presence of gas or a high-velocity material like gas hydrates or carbonates. In most cases, the high-amplitude anomalies line up along specific vertical pathways that connect nicely with the small-scale pits at the surface where gas bubbles seep from the seafloor. We re-acquired the 3D seismic survey in 2013 for time-lapse seismic studies in order to better understand the origin of the amplitude anomalies and in order to track potentially migrating gas fronts up along the chimney structure. The time-lapse seismic analysis indicates several areas, where gas migration may have led to changes in acoustic properties of the subsurface. These areas are located along chimney structures and the BSR. This work provides a basis for better

  12. Assessment of human embryos by time-lapse videography: A comparison of quantitative and qualitative measures between two independent laboratories.

    PubMed

    Liu, Yanhe; Copeland, Christopher; Stevens, Adam; Feenan, Katie; Chapple, Vincent; Myssonski, Kim; Roberts, Peter; Matson, Phillip

    2015-12-01

    A total of 488 Day 3 human embryos with known implantation data from two independent in vitro fertilization laboratories were included for analysis, with 270 from Fertility North (FN) and 218 from Canberra Fertility Centre (CFC). Implanting embryos grew at different rates between FN and CFC as indicated in hours of the time intervals between pronuclear fading and the 4- (13.9 ± 1.1 vs. 14.9 ± 1.8), 5- (25.7 ± 1.9 vs. 28.4 ± 3.7) and 8-cell stages (29.0 ± 3.2 vs. 32.2 ± 4.6), as well as the durations of 2- (10.8 ± 0.8 vs. 11.6 ± 1.1), 3- (0.4 ± 0.5 vs. 0.9 ± 1.2), and 4-cell stages (11.8 ± 1.4 vs. 13.6 ± 2.9), all p<0.05. The application of a previously published time-lapse algorithm on ICSI embryos from the two participating laboratories failed to reproduce a predictive pattern of implantation outcomes (FN: AUC=0.565, p=0.250; CFC: AUC=0.614, p=0.224). However, for the qualitative measures including poor conventional morphology, direct cleavage, reverse cleavage and <6 intercellular contact points at the end of the 4-cell stage, there were similar proportions of embryos showing at least one of these biological events in either implanting (3.1% vs. 3.3%, p>0.05) or non-implanting embryos (30.4% vs. 38.3%, p>0.05) between FN and CFC. Furthermore, implanting embryos favored lower proportions of the above biological events compared to the non-implanting ones in both laboratories (both p<0.01). To conclude, human embryo morphokinetics may vary between laboratories, therefore time-lapse algorithms emphasizing quantitative timing parameters may have reduced inter-laboratory transferability; qualitative measures are independent of cell division timings, with potentially improved inter-laboratory reproducibility.

  13. Sequential digital elevation models of active lava flows from ground-based stereo time-lapse imagery

    NASA Astrophysics Data System (ADS)

    James, M. R.; Robson, S.

    2014-11-01

    We describe a framework for deriving sequences of digital elevation models (DEMs) for the analysis of active lava flows using oblique stereo-pair time-lapse imagery. A photo-based technique was favoured over laser-based alternatives due to low equipment cost, high portability and capability for network expansion, with images of advancing flows captured by digital SLR cameras over durations of up to several hours. However, under typical field scale scenarios, relative camera orientations cannot be rigidly maintained (e.g. through the use of a stereo bar), preventing the use of standard stereo time-lapse processing software. Thus, we trial semi-automated DEM-sequence workflows capable of handling the small camera motions, variable image quality and restricted photogrammetric control that result from the practicalities of data collection at remote and hazardous sites. The image processing workflows implemented either link separate close-range photogrammetry and traditional stereo-matching software, or are integrated in a single software package based on structure-from-motion (SfM). We apply these techniques in contrasting case studies from Kilauea volcano, Hawaii and Mount Etna, Sicily, which differ in scale, duration and image texture. On Kilauea, the advance direction of thin fluid lava lobes was difficult to forecast, preventing good distribution of control. Consequently, volume changes calculated through the different workflows differed by ∼10% for DEMs (over ∼30 m2) that were captured once a minute for 37 min. On Mt. Etna, more predictable advance (∼3 m h-1 for ∼3 h) of a thicker, more viscous lava allowed robust control to be deployed and volumetric change results were generally within 5% (over ∼500 m2). Overall, the integrated SfM software was more straightforward to use and, under favourable conditions, produced results comparable to those from the close-range photogrammetry pipeline. However, under conditions with limited options for photogrammetric

  14. Comparing time-lapse GPR data collected under natural and forced infiltration conditions to estimate unsaturated soil hydraulic properties

    NASA Astrophysics Data System (ADS)

    Scholer, M.; Irving, J.; Looms, M.; Nielsen, L.; Holliger, K.

    2012-04-01

    Geophysical methods can provide valuable information on vadose zone hydrological properties and reduce uncertainties in the estimation of the van Genuchten-Mualem (VGM) parameters, which provide a comprehensive description of the soil water retention characteristics. In particular, time lapse crosshole GPR measurements allow for the monitoring of water content changes in the subsurface during infiltration, which can be used to effectively estimate the pertinent hydraulic parameters when combined with a process-based model. Infiltration can be monitored under natural or forced loading conditions. Under natural loading, a number of studies have found the estimation of the VGM parameters to be difficult because changes in moisture content over time can be quite small. Specifically, multiple measurements over time have been found to provide only limited additional constraints on the estimated hydraulic parameters. A forced infiltration test can help to overcome this issue by producing large variations in subsurface water content. However, this type of experiment may disturb the original medium and hence may result in errors related to the forced, artificial conditions. Here, our goal is to compare the results of inverting time-lapse GPR data collected under natural loading conditions with those collected during a forced infiltration experiment. Recent research has shown that stochastic inverse methods can be an effective means of accounting for the inherent non-linearity and non-uniqueness in coupled hydrogeophysical parameter estimation problems. Therefore, we perform our inversion within a Bayesian framework and use a Markov chain Monte Carlo (McMC) strategy to estimate the posterior distributions of model parameters. With this methodology, parameter uncertainties can be obtained and parameter distributions can be compared between the two experiment types. Using a synthetic example, we first examine a five-layer case and invert for the VGM parameters for each layer

  15. CO2 mass estimation visible in time-lapse 3D seismic data from a saline aquifer and uncertainties

    NASA Astrophysics Data System (ADS)

    Ivanova, A.; Lueth, S.; Bergmann, P.; Ivandic, M.

    2014-12-01

    At Ketzin (Germany) the first European onshore pilot scale project for geological storage of CO2 was initiated in 2004. This project is multidisciplinary and includes 3D time-lapse seismic monitoring. A 3D pre-injection seismic survey was acquired in 2005. Then CO2 injection into a sandstone saline aquifer started at a depth of 650 m in 2008. A 1st 3D seismic repeat survey was acquired in 2009 after 22 kilotons had been injected. The imaged CO2 signature was concentrated around the injection well (200-300 m). A 2nd 3D seismic repeat survey was acquired in 2012 after 61 kilotons had been injected. The imaged CO2 signature further extended (100-200 m). The injection was terminated in 2013. Totally 67 kilotons of CO2 were injected. Time-lapse seismic processing, petrophysical data and geophysical logging on CO2 saturation have allowed for an estimate of the amount of CO2 visible in the seismic data. This estimate is dependent upon a choice of a number of parameters and contains a number of uncertainties. The main uncertainties are following. The constant reservoir porosity and CO2 density used for the estimation are probably an over-simplification since the reservoir is quite heterogeneous. May be velocity dispersion is present in the Ketzin reservoir rocks, but we do not consider it to be large enough that it could affect the mass of CO2 in our estimation. There are only a small number of direct petrophysical observations, providing a weak statistical basis for the determination of seismic velocities based on CO2 saturation and we have assumed that the petrophysical experiments were carried out on samples that are representative for the average properties of the whole reservoir. Finally, the most of the time delay values in the both 3D seismic repeat surveys within the amplitude anomaly are near the noise level of 1-2 ms, however a change of 1 ms in the time delay affects significantly the mass estimate, thus the choice of the time-delay cutoff is crucial. In spite

  16. A derivative-free approach for the estimation of porosity and permeability using time-lapse seismic and production data

    NASA Astrophysics Data System (ADS)

    Dadashpour, Mohsen; Echeverria Ciaurri, David; Mukerji, Tapan; Kleppe, Jon; Landrø, Martin

    2010-12-01

    In this study, we apply a derivative-free optimization algorithm to estimate porosity and permeability from time-lapse seismic data and production data from a real reservoir (Norne field). In some circumstances, obtaining gradient information (exact and/or approximate) can be problematic e.g. derivatives are not available from a commercial simulator, or results are needed within a very short time frame. Derivative-free optimization approaches can be very time consuming because they often require many simulations. Typically, one iteration roughly needs as many simulations as the number of optimization variables. In this work, we propose two ways to significantly increase the efficiency of an optimization methodology in model inversion problems. First, by principal component analysis we decrease the number of optimization variables while keeping geostatistical consistency, and second, noticing that some optimization methods are very amenable to being parallelized, we apply them within a distributed computing framework. If we combine all this, the model inversion approach can be robust, fairly efficient and very simple to implement. In this paper, we apply the methodology to two cases: a semi-synthetic model with noisy data, and a case based entirely on field data. The results show that the derivative-free approach presented is robust against noise in the data.

  17. In vivo time-lapse imaging shows diverse niche engagement by quiescent and naturally activated hematopoietic stem cells

    PubMed Central

    Rashidi, Narges M.; Scott, Mark K.; Scherf, Nico; Krinner, Axel; Kalchschmidt, Jens S.; Gounaris, Kleoniki; Selkirk, Murray E.; Roeder, Ingo

    2014-01-01

    Hematopoietic stem cells (HSCs) maintain the turnover of mature blood cells during steady state and in response to systemic perturbations such as infections. Their function critically depends on complex signal exchanges with the bone marrow (BM) microenvironment in which they reside, but the cellular mechanisms involved in HSC-niche interactions and regulating HSC function in vivo remain elusive. We used a natural mouse parasite, Trichinella spiralis, and multipoint intravital time-lapse confocal microscopy of mouse calvarium BM to test whether HSC-niche interactions may change when hematopoiesis is perturbed. We find that steady-state HSCs stably engage confined niches in the BM whereas HSCs harvested during acute infection are motile and therefore interact with larger niches. These changes are accompanied by increased long-term repopulation ability and expression of CD44 and CXCR4. Administration of a CXCR4 antagonist affects the duration of HSC-niche interactions. These findings suggest that HSC-niche interactions may be modulated during infection. PMID:24850759

  18. Lapses, infidelities, and creative adaptations: lessons from evaluation of a participatory market development approach in the Andes.

    PubMed

    Horton, Douglas; Rotondo, Emma; Paz Ybarnegaray, Rodrigo; Hareau, Guy; Devaux, André; Thiele, Graham

    2013-08-01

    Participatory approaches are frequently recommended for international development programs, but few have been evaluated. From 2007 to 2010 the Andean Change Alliance evaluated an agricultural research and development approach known as the "Participatory Market Chain Approach" (PMCA). Based on a study of four cases, this paper examines the fidelity of implementation, the factors that influenced implementation and results, and the PMCA change model. We identify three types of deviation from the intervention protocol (lapses, creative adaptations, and true infidelities) and five groups of variables that influenced PMCA implementation and results (attributes of the macro context, the market chain, the key actors, rules in use, and the capacity development strategy). There was insufficient information to test the validity of the PMCA change model, but results were greatest where the PMCA was implemented with highest fidelity. Our analysis suggests that the single most critical component of the PMCA is engagement of market agents - not just farmers - throughout the exercise. We present four lessons for planning and evaluating participatory approaches related to the use of action and change models, the importance of monitoring implementation fidelity, the limits of baseline survey data for outcome evaluation, and the importance of capacity development for implementers. PMID:23619235

  19. Working Memory Moderates the Association Between Smoking Urge and Smoking Lapse Behavior After Alcohol Administration in a Laboratory Analogue Task

    PubMed Central

    Kahler, Christopher W.; Metrik, Jane; Spillane, Nichea S.; Tidey, Jennifer W.; Rohsenow, Damaris J.

    2015-01-01

    Introduction: Lapses after smoking cessation often occur in the context of alcohol use, possibly because alcohol increases urge to smoke. Poor working memory, or alcohol-induced decrements in working memory, may influence this relationship by making it more difficult for an individual to resist smoking in the face of smoking urges. Methods: Participants (n = 41) completed measures of working memory and urge to smoke before and after alcohol administration (placebo, 0.4g/kg, and 0.8g/kg, within subjects) and then participated in a laboratory analogue task in which smoking abstinence was monetarily incentivized. Results: Working memory moderated the relationship between smoking urge and latency to smoke: for those with relatively poorer working memory, urge to smoke was more strongly and negatively associated with latency to smoke (i.e., higher urges were associated with shorter latency). Conclusions: Those with weak working memory may need additional forms of treatment to help them withstand smoking urges. PMID:25481913

  20. Large-scale time-lapse microscopy of Oct4 expression in human embryonic stem cell colonies.

    PubMed

    Bhadriraju, Kiran; Halter, Michael; Amelot, Julien; Bajcsy, Peter; Chalfoun, Joe; Vandecreme, Antoine; Mallon, Barbara S; Park, Kye-Yoon; Sista, Subhash; Elliott, John T; Plant, Anne L

    2016-07-01

    Identification and quantification of the characteristics of stem cell preparations is critical for understanding stem cell biology and for the development and manufacturing of stem cell based therapies. We have developed image analysis and visualization software that allows effective use of time-lapse microscopy to provide spatial and dynamic information from large numbers of human embryonic stem cell colonies. To achieve statistically relevant sampling, we examined >680 colonies from 3 different preparations of cells over 5days each, generating a total experimental dataset of 0.9 terabyte (TB). The 0.5 Giga-pixel images at each time point were represented by multi-resolution pyramids and visualized using the Deep Zoom Javascript library extended to support viewing Giga-pixel images over time and extracting data on individual colonies. We present a methodology that enables quantification of variations in nominally-identical preparations and between colonies, correlation of colony characteristics with Oct4 expression, and identification of rare events. PMID:27286574

  1. Monitoring the impact of de-icing salt on roadside soils with time-lapse resistivity measurements

    NASA Astrophysics Data System (ADS)

    Olofsson, Bo; Lundmark, Annika

    2009-03-01

    Monitoring systems along roads are needed to facilitate decisions on improving protection of water resources and decreasing the impact of road-related pollutants on the roadside environment. This paper presents a monitoring system using permanently installed electrodes and monthly measurements of resistivity at a motorway in Sweden with heavy loads of de-icing salt. A significant increase in resistivity in the vadose zone with increasing distance from the road was shown in both sand and glacial till areas during the whole year. By measuring temporal variations in a less affected environment further from the road, a distinction could be made between more natural variations and variations due to de-icing salt and melting of roadside snowbanks. The highest resistivities occurred in October-November and the lowest in January-March, while the more natural resistivities showed an opposing temporal variation. The difference was up to 35% on a log-scale in the sand area during the latter period. Hence, the time-lapse resistivity measurements clearly showed a strong influence of de-icing salt on roadside soils and groundwater during winter and spring. The measurement system and the analysis methods proved useful for monitoring both the spatial and seasonal variation in resistivity.

  2. Lapses, infidelities, and creative adaptations: lessons from evaluation of a participatory market development approach in the Andes.

    PubMed

    Horton, Douglas; Rotondo, Emma; Paz Ybarnegaray, Rodrigo; Hareau, Guy; Devaux, André; Thiele, Graham

    2013-08-01

    Participatory approaches are frequently recommended for international development programs, but few have been evaluated. From 2007 to 2010 the Andean Change Alliance evaluated an agricultural research and development approach known as the "Participatory Market Chain Approach" (PMCA). Based on a study of four cases, this paper examines the fidelity of implementation, the factors that influenced implementation and results, and the PMCA change model. We identify three types of deviation from the intervention protocol (lapses, creative adaptations, and true infidelities) and five groups of variables that influenced PMCA implementation and results (attributes of the macro context, the market chain, the key actors, rules in use, and the capacity development strategy). There was insufficient information to test the validity of the PMCA change model, but results were greatest where the PMCA was implemented with highest fidelity. Our analysis suggests that the single most critical component of the PMCA is engagement of market agents - not just farmers - throughout the exercise. We present four lessons for planning and evaluating participatory approaches related to the use of action and change models, the importance of monitoring implementation fidelity, the limits of baseline survey data for outcome evaluation, and the importance of capacity development for implementers.

  3. Automated tracking of temporal displacements of a red blood cell obtained by time-lapse digital holographic microscopy.

    PubMed

    Moon, Inkyu; Yi, Faliu; Rappaz, Benjamin

    2016-01-20

    Red blood cell (RBC) phase images that are numerically reconstructed by digital holographic microscopy (DHM) can describe the cell structure and dynamics information beneficial for a quantitative analysis of RBCs. However, RBCs investigated with time-lapse DHM undergo temporal displacements when their membranes are loosely attached to the substrate during sedimentation on a glass surface or due to the microscope drift. Therefore, we need to develop a tracking algorithm to localize the same RBC among RBC image sequences and dynamically monitor its biophysical cell parameters; this information is helpful for studies on RBC-related diseases and drug tests. Here, we propose a method, which is a combination of the mean-shift algorithm and Kalman filter, to track a single RBC and demonstrate that the optical path length of the single RBC can be continually extracted from the tracked RBC. The Kalman filter is utilized to predict the target RBC position in the next frame. Then, the mean-shift algorithm starts execution from the predicted location, and a robust kernel, which is adaptive to changes in the RBC scale, shape, and direction, is designed to improve the accuracy of the tracking. Finally, the tracked RBC is segmented and parameters such as the RBC location are extracted to update the Kalman filter and the kernel function for mean-shift tracking; the characteristics of the target RBC are dynamically observed. Experimental results show the feasibility of the proposed algorithm.

  4. Through the Looking Glass: Time-lapse Microscopy and Longitudinal Tracking of Single Cells to Study Anti-cancer Therapeutics.

    PubMed

    Burke, Russell T; Orth, James D

    2016-01-01

    The response of single cells to anti-cancer drugs contributes significantly in determining the population response, and therefore is a major contributing factor in the overall outcome. Immunoblotting, flow cytometry and fixed cell experiments are often used to study how cells respond to anti-cancer drugs. These methods are important, but they have several shortcomings. Variability in drug responses between cancer and normal cells, and between cells of different cancer origin, and transient and rare responses are difficult to understand using population averaging assays and without being able to directly track and analyze them longitudinally. The microscope is particularly well suited to image live cells. Advancements in technology enable us to routinely image cells at a resolution that enables not only cell tracking, but also the observation of a variety of cellular responses. We describe an approach in detail that allows for the continuous time-lapse imaging of cells during the drug response for essentially as long as desired, typically up to 96 hr. Using variations of the approach, cells can be monitored for weeks. With the employment of genetically encoded fluorescent biosensors numerous processes, pathways and responses can be followed. We show examples that include tracking and quantification of cell growth and cell cycle progression, chromosome dynamics, DNA damage, and cell death. We also discuss variations of the technique and its flexibility, and highlight some common pitfalls. PMID:27213923

  5. Time-lapse atomic force microscopy in the characterization of amyloid-like fibril assembly and oligomeric intermediates.

    PubMed

    Goldsbury, Claire; Green, Janelle

    2005-01-01

    The atomic force microscope (AFM) images the topography of biological structures adsorbed to surfaces with nanometer to angstrom scale resolution. Amyloid-like fibrils and oligomers can be imaged in buffer solutions, allowing the samples to retain physiological-like properties while temporal changes in structure are monitored, e.g., the elongation of fibrils or the growth of single oligomers. These qualities distinguish AFM from conventional imaging techniques of comparable resolution, i.e., electron microscopy (EM). However, AFM is limited in that the specimen must be firmly attached to a solid support for measurement and that time-lapse imaging of individual assemblies can thus only be achieved for fibrils and oligomers growing on this support. Nevertheless, AFM has provided several insights into the in vitro assembly mechanism and structures of amyloid-like fibrils. The first section of this chapter provides a methodological introduction to AFM, whilst the second details the application of this technique to the investigation of amyloidogenic proteins, specifically amylin and amyloid-beta (Abeta) peptides. PMID:15980598

  6. Automated segmentation and tracking of non-rigid objects in time-lapse microscopy videos of polymorphonuclear neutrophils.

    PubMed

    Brandes, Susanne; Mokhtari, Zeinab; Essig, Fabian; Hünniger, Kerstin; Kurzai, Oliver; Figge, Marc Thilo

    2015-02-01

    Time-lapse microscopy is an important technique to study the dynamics of various biological processes. The labor-intensive manual analysis of microscopy videos is increasingly replaced by automated segmentation and tracking methods. These methods are often limited to certain cell morphologies and/or cell stainings. In this paper, we present an automated segmentation and tracking framework that does not have these restrictions. In particular, our framework handles highly variable cell shapes and does not rely on any cell stainings. Our segmentation approach is based on a combination of spatial and temporal image variations to detect moving cells in microscopy videos. This method yields a sensitivity of 99% and a precision of 95% in object detection. The tracking of cells consists of different steps, starting from single-cell tracking based on a nearest-neighbor-approach, detection of cell-cell interactions and splitting of cell clusters, and finally combining tracklets using methods from graph theory. The segmentation and tracking framework was applied to synthetic as well as experimental datasets with varying cell densities implying different numbers of cell-cell interactions. We established a validation framework to measure the performance of our tracking technique. The cell tracking accuracy was found to be >99% for all datasets indicating a high accuracy for connecting the detected cells between different time points. PMID:25465844

  7. Presentation of a High Resolution Time Lapse 3D Groundwater Model of Metsähovi for Calculating the Gravity Effect of Groundwater in Local Scale

    NASA Astrophysics Data System (ADS)

    Hokkanen, T. M.; Hartikainen, A.; Raja-Halli, A.; Virtanen, H.; Makinen, J.

    2015-12-01

    INTRODUCTION The aim of this study is to construct a fine resolution time lapse groundwater (GW) model of Metsähovi (MH). GW, geological, and soil moisture (SM) data were collected for several years to achieve the goal. The knowledge of the behavior of the GW at local scale is essential for superconductive gravimeter (SG) investigations performing in MH. DESCRIPTION OF THE DATA Almost 50 sensors have been recorded SM data some 6 years with 1 to 5 minutes sampling frequency. The GW table has been monitored, both in bedrock and in soil, in many stages with all together 15 piezometers. Two geological sampling campaigns were conducted to get the knowledge of hydrological properties of soil in the study area of 200×200 m2 around SG station in MH. PRINCIPLE OF TIME LAPSE 3D HYDROGEOLOGICAL MODEL The model of study site consists of the surfaces of ground and bedrock gridded with 2×2 m2 resolution. The height of GW table was interpolated to 2×2×0.1 m3 grid between GW and SM monitoring points. Close to the outline of the study site and areas lacking of sensors GW table was defined by extrapolation and considering the geological information of the area. The bedrock porosity is 2% and soil porosity determined by geological information and SM recordings is from 5 to 35%. Only fully saturated media is considered in the time lapse model excluding unsaturated one. BENEFICIERS With a new model the fluctuation of GW table can be followed with ranging time lapses from 1 minute to 1 month. The gravity effect caused by the variation of GW table can be calculated more accurate than before in MH. Moreover, the new model can be validated and refined by measured gravity, i.e. hydrological model can be improved by SG recordings (Figure 1).

  8. In situ monitoring of corrosion mechanisms and phosphate inhibitor surface deposition during corrosion of zinc-magnesium-aluminium (ZMA) alloys using novel time-lapse microscopy.

    PubMed

    Sullivan, James; Cooze, Nathan; Gallagher, Callum; Lewis, Tom; Prosek, Tomas; Thierry, Dominique

    2015-01-01

    In situ time-lapse optical microscopy was used to examine the microstructural corrosion mechanisms in three zinc-magnesium-aluminium (ZMA) alloy coated steels immersed in 1% NaCl pH 7. Preferential corrosion of MgZn(2) lamellae within the eutectic phases was observed in all the ZMA alloys followed by subsequent dissolution of Zn rich phases. The total extent and rate of corrosion, measured using time-lapse image analysis and scanning vibrating electrode technique (SVET) estimated mass loss, decreased as Mg and Al alloying additions were increased up to a level of 3 wt% Mg and 3.7 wt% Al. This was probably due to the increased presence of MgO and Al(2)O(3) at the alloy surface retarding the kinetics of cathodic oxygen reduction. The addition of 1 × 10(-2) mol dm(-3) Na(3)PO(4) to 1% NaCl pH 7 had a dramatic influence on the corrosion mechanism for a ZMA with passivation of anodic sites through phosphate precipitation observed using time-lapse image analysis. Intriguing rapid precipitation of filamentous phosphate was also observed and it is postulated that these filaments nucleate and grow due to super saturation effects. Polarisation experiments showed that the addition of 1 × 10(-2) mol dm(-3) Na(3)PO(4) to the 1% NaCl electrolyte promoted an anodic shift of 50 mV in open circuit potential for the ZMA alloy with a reduction in anodic current of 2.5 orders of magnitude suggesting that it was acting primarily as an anodic inhibitor supporting the inferences from the time-lapse investigations. These phosphate additions resulted in a 98% reduction in estimated mass loss as measured by SVET demonstrating the effectiveness of phosphate inhibitors for this alloy system.

  9. Imaging high stage river-water intrusion into a contaminated aquifer along a major river corridor using 2D time-lapse surface electrical resistivity tomography

    SciTech Connect

    Wallin, Erin L.; Johnson, Timothy C.; Greenwood, William J.; Zachara, John M.

    2013-03-29

    The Hanford 300 Area is located adjacent to the Columbia River in south-central Washington State, USA, and was a former site for nuclear fuel processing operations. Waste disposal practices resulted in persistent unsaturated zone and groundwater contamination, the primary contaminant of concern being uranium. Uranium behavior at the site is intimately linked with river stage driven groundwater-river water exchange such that understanding the nature of river water intrusion into the 300 Area is critical for predicting uranium desorption and transport. In this paper we use time-lapse electrical resistivity tomography (ERT) to image the inland intrusion of river during high stage conditions. We demonstrate a modified time-lapse inversion approach, whereby the transient water table elevation is explicitly modeled by removing regularization constraints across the water table boundary. This implementation was critical for producing meaningful imaging results. We inverted approximately 1200 data sets (400 per line over 3 lines) using high performance computing resources to produce a time-lapse sequence of changes in bulk conductivity caused by river water intrusion during the 2011 spring runoff cycle over approximately 125 days. The resulting time series for each mesh element was then analyzed using common time series analysis to reveal the timing and location of river water intrusion beneath each line. The results reveal non-uniform flows characterized by preferred flow zones where river water enters and exits quickly with stage increase and decrease, and low permeability zones with broader bulk conductivity ‘break through’ curves and longer river water residence times. The time-lapse ERT inversion approach removes the deleterious effects of changing water table elevation and enables remote and spatial continuous groundwater-river water exchange monitoring using surface based ERT arrays under conditions where groundwater and river water conductivity are in contrast.

  10. Are seismic velocity time-lapse changes due to fluid substitution or matrix dissolution? A CO2 sequestration study at Pohokura Field, New Zealand

    NASA Astrophysics Data System (ADS)

    Adam, L.; Sim, C. Y.; Macfarlane, J.; van Wijk, K.; Shragge, J. C.; Higgs, K.

    2015-12-01

    Time-lapse seismic signatures can be used to quantify fluid saturation and pressure changes in a reservoir undergoing CO2 sequestration. However, the injection of CO2 acidifies the water, which may dissolve and/or precipitate minerals. Understanding the impact on the rock frame from field seismic time-lapse changes remains an outstanding challenge. Here, we study the effects of carbonate-CO2-water reactions on the physical and elastic properties of rock samples with variable volumes of carbonate cementation. The effects of fluid substitution alone (brine to CO2) and those due to the combination of fluid substitution and mineral dissolution on time-lapse seismic signatures are studied by combining laboratory data, geophysical well-log data and 1-D seismic modeling. Nine rocks from Pohokura Field (New Zealand) are reacted with carbonic acid. The elastic properties are measured using a high-density laser-ultrasonic setup. We observe that P-wave velocity changes up to -19% and correlate with sandstone grain size. Coarse-grained sandstones show greater changes in elastic wave velocities due to dissolution than fine-grained sandstones. To put this in perspective, this velocity change is comparable to the effect of fluid substitution from brine to CO2. This can potentially create an ambiguity in the interpretation of the physical processes responsible for time-lapse signatures in a CO2injection scenario. The laboratory information is applied onto well-log data to model changes in elastic properties of sandstones at the well-log scale. Well-logs and core petrographic analyses are used to find an elastic model that best describes the observed elastic waves velocities in the cemented reservoir sandstones. The Constant-cement rock physics model is found to predict the elastic behaviour of the cemented sandstones. A possible late-time sequestration scenario is that both mineral dissolution and fluid substitution occur in the reservoir. 1-D synthetic seismograms show that

  11. Selection of competent blastocysts for transfer by combining time-lapse monitoring and array CGH testing for patients undergoing preimplantation genetic screening: a prospective study with sibling oocytes

    PubMed Central

    2014-01-01

    Background Recent advances in time-lapse monitoring in IVF treatment have provided new morphokinetic markers for embryonic competence. However, there is still very limited information about the relationship between morphokinetic parameters, chromosomal compositions and implantation potential. Accordingly, this study aimed at investigating the effects of selecting competent blastocysts for transfer by combining time-lapse monitoring and array CGH testing on pregnancy and implantation outcomes for patients undergoing preimplantation genetic screening (PGS). Methods A total of 1163 metaphase II (MII) oocytes were retrieved from 138 PGS patients at a mean age of 36.6 ± 2.4 years. These sibling MII oocytes were then randomized into two groups after ICSI: 1) Group A, oocytes (n = 582) were cultured in the time-lapse system and 2) Group B, oocytes (n = 581) were cultured in the conventional incubator. For both groups, whole genomic amplification and array CGH testing were performed after trophectoderm biopsy on day 5. One to two euploid blastocysts within the most predictive morphokinetic parameters (Group A) or with the best morphological grade available (Group B) were selected for transfer to individual patients on day 6. Ongoing pregnancy and implantation rates were compared between the two groups. Results There were significant differences in clinical pregnancy rates between Group A and Group B (71.1% vs. 45.9%, respectively, p = 0.037). The observed implantation rate per embryo transfer significantly increased in Group A compared to Group B (66.2% vs. 42.4%, respectively, p = 0.011). Moreover, a significant increase in ongoing pregnancy rates was also observed in Group A compared to Group B (68.9% vs. 40.5%. respectively, p = 0.019). However, there was no significant difference in miscarriage rate between the time-lapse system and the conventional incubator (3.1% vs. 11.8%, respectively, p = 0.273). Conclusions This is the first prospective investigation using

  12. Application of Time-Lapse Seismic Monitoring for the Control and Optimization of CO2 Enhanced Oil Recovery Operations

    SciTech Connect

    Brian E. Toelle

    2006-02-28

    The ''Application of Time-Lapse Seismic Monitoring for the Control and Optimization of CO{sub 2} Enhanced Oil Recovery Operations'' project is investigating the potential for monitoring CO{sub 2} floods in carbonate reservoirs through the use of standard p-wave seismic data. This project will involve the use of 4D seismic (time lapse seismic) to try to observe the movement of the injected CO{sub 2} through the reservoir. The differences between certain seismic attributes, such as amplitude, will be used to detect and map the movement of CO{sub 2} within the reservoir. This technique has recently been shown to be effective in CO{sub 2} monitoring in EOR projects such as Weyborne. The project is being conducted in the Charlton 30/31 field in northern Michigan Basin which is a Silurian pinnacle reef that has completed its primary production. This field is now undergoing enhanced oil recovery using CO{sub 2}. The CO{sub 2} flood was initiated the end of 2005 when the injection of small amounts of CO{sub 2} begin in the A1 Carbonate. This injection was conducted for 2 months before being temporarily halted in order for pressure measurements to be conducted. The determination of the reservoir's porosity distribution is proving to be a significant portion of this project. In order to relate the differences observed between the seismic attributes seen on the multiple surveys and the actual location of the CO{sub 2}, a predictive reservoir simulation model had to be developed. From this model, an accurate determination of porosity within the carbonate reservoir must be obtained. For this certain seismic attributes have been investigated. The study reservoirs in the Charlton 30/31 field range from 50 to 400 acres in size. The relatively small area to image makes 3-D seismic data acquisition reasonably cost effective. Permeability and porosity vary considerably throughout the reef, thus it is essential to perform significant reservoir characterization and modeling prior to

  13. Regularized focusing inversion of time-lapse electrical resistivity data: an approach to parametrize the minimum gradient support functional

    NASA Astrophysics Data System (ADS)

    Nguyen, Frédéric; Hermans, Thomas

    2015-04-01

    Inversion of time-lapse resistivity data allows obtaining 'snapshots' of changes occurring in monitored systems for applications such as aquifer storage, geothermal heat exchange, site remediation or tracer tests. Based on these snapshots, one can infer qualitative information on the location and morphology of changes occurring in the subsurface but also quantitative estimates on the degree of changes in certain property such as temperature or total dissolved solid content. Analysis of these changes can provide direct insight into flow and transport and associated processes and controlling parameters. However, the reliability of the analysis is dependent on survey geometry, measurement schemes, data error, and regularization. Survey design parameters may be optimized prior to the monitoring survey. Regularization, on the other hand, may be chosen depending on available information collected during the monitoring. Common approaches consider smoothing model changes both in space and time but it is often needed to obtain a sharp temporal anomaly, for example in fractured aquifers. We here propose to use the alternative regularization approach based on minimum gradient support (MGS) (Zhdanov, 2002) for time-lapse surveys which will focus the changes in tomograms snapshots. MGS will limit the occurrences of changes in electrical resistivity but will also restrict the variations of these changes inside the different zones. A commonly encountered difficulty by practitioners in this type of regularization is the choice of an additional parameter, the so-called β, required to define the MGS functional. To the best of our knowledge, there is no commonly accepted or standard methodology to optimize the MGS parameter β. The inversion algorithm used in this study is CRTomo (Kemna 2000). It uses a Gauss-Newton scheme to iteratively minimize an objective function which consists of a data misfit functional and a model constraint functional. A univariate line search is performed

  14. 2D Time-lapse Resistivity Monitoring of an Organic Produced Gas Plume in a Landfill using ERT.

    NASA Astrophysics Data System (ADS)

    Amaral, N. D.; Mendonça, C. A.; Doherty, R.

    2014-12-01

    This project has the objective to study a landfill located on the margins of Tietê River, in São Paulo, Brazil, using the electroresistivity tomography method (ERT). Due to huge organic matter concentrations in the São Paulo Basin quaternary sediments, there is subsurface depth related biogas accumulation (CH4 and CO2), induced by anaerobic degradation of the organic matter. 2D resistivity sections were obtained from a test area since March 2012, a total of 7 databases, being the last one dated from October 2013. The studied line has the length of 56m, the electrode interval is of 2m. In addition, there are two boreholes along the line (one with 3 electrodes and the other one with 2) in order to improve data quality and precision. The boreholes also have a multi-level sampling system that indicates the fluid (gas or water) presence in relation to depth. With our results it was possible to map the gas plume position and its area of extension in the sections as it is a positive resistivity anomaly, with the gas level having approximately 5m depth. With the time-lapse analysis (Matlab script) between the obtained 2D resistivity sections from the site, it was possible to map how the biogas volume and position change in the landfill in relation to time. Our preliminary results show a preferential gas pathway through the subsurface studied area. A consistent relation between the gas depth and obtained microbiological data from archea and bacteria population was also observed.

  15. In vivo time-lapse imaging of skin burn wound healing using second-harmonic generation microscopy

    NASA Astrophysics Data System (ADS)

    Yasui, Takeshi; Tanaka, Ryosuke; Hase, Eiji; Fukushima, Shu-ichiro; Araki, Tsutomu

    2014-02-01

    Wound healing is a process to repair the damaged tissue caused by thermal burn, incised wound, or stab wound. Although the wound healing has many aspects, it is common for dynamics of collagen fiber, such as decomposition, production, or growth, to be closely related with wound healing. If such the healing process can be visualized as a timelapse image of the collagen fiber in the same subject, one may obtain new findings regarding biological repairing mechanisms in the healing process. In this article, to investigate the temporal modoification of dermal collagen fiber in the burn wound healing, we used second-harmonic-generation (SHG) microscopy, showing high selectivity and good image contrast to collagen molecules as well as high spatial resolution, optical three-dimensional sectioning, minimal invasiveness, deep penetration, the absence of interference from background light, and in vivo measurement without additional staining. Since SHG light arises from a non-centrosymmetric triple helix of three polypeptide chains in the collagen molecule, SHG intensity sensitively reflects the structure maturity of collagen molecule and its aggregates. A series of time-lapse SHG images during the wound healing process of 2 weeks clearly indicated that condensation and melting of dermal collagen fibers by the deep dermal burn, decomposition of the damaged collagen fibers in the inflammation phase, production of new collagen fibers in the proliferation phase, and the growth of the new collagen fibers in the remodeling phase. These results show a high potential of SHG microscopy for optical assessment of the wound healing process in vivo.

  16. Proliferation of pulmonary endothelial cells: time-lapse cinematography of growth to confluence and restitution of monolayer after wounding.

    PubMed

    Ryan, U S; Absher, M; Olazabal, B M; Brown, L M; Ryan, J W

    1982-01-01

    A fundamental characteristic of vascular endothelium is that it exists as a monolayer, a condition that must be met in both vascular growth and repair. Maintenance of the monolayer is important both for the exchange of nutrients and for interactions between blood solutes and endothelial enzymes and transport systems. We have used time-lapse cinematography to compare proliferative behavior of bovine pulmonary endothelial cells in (1) establishment of a monolayer from a low-density seed (7.5 X 10(4) cells in a 60 mm dish) and (2) restitution of a confluent monolayer (approx. 2.9 x 10(6) cells in a 60 mm dish) following a mechanical wound (removal of cells from an area 5 x 15 mm by scraping). Culture 2 was not refed after wounding. In culture 2, approx. 30% of the cells accounted for repopulation (confluence in 40 hr). In culture 1, all cells entered into division. Participating cells of culture 2 began division immediately (69 divisions/filmed area in 10 hr, vs. four divisions in culture 1). Interdivision times (IDT) were longer and relatively constant in culture 1 until near confluence; none were less than 10 h, whereas in 2, 24% of the IDT's were less than or equal to 10 hr. Remarkably, IDTs of culture 2 decreased steadily until confluence was re-established. Cell migration in culture 1 was multidirectional while direction of migration in culture 2 was always into the wound area. Mean migration rate (MIG) in culture 2 was related to the site of origin of the cells, those dividing farthest from the unwounded area had fastest MIGs. Neither culture formed more than a single layer of cells. Although the cell kinetics of cultures 1 and 2 differed, the same goal, confluence, was achieved in either case.

  17. Application of time-lapse ERT to Characterize Soil-Water-Disease Interactions of Citrus Orchard - Case Study

    NASA Astrophysics Data System (ADS)

    Peddinti, S. R.; Kbvn, D. P.; Ranjan, S.; Suradhaniwar, S.; J, P. A.; R M, G.

    2015-12-01

    Vidarbha region in Maharashtra, India (home for mandarin Orange) experience severe climatic uncertainties resulting in crop failure. Phytopthora are the soil-borne fungal species that accumulate in the presence of moisture, and attack the root / trunk system of Orange trees at any stage. A scientific understanding of soil-moisture-disease relations within the active root zone under different climatic, irrigation, and crop cycle conditions can help in practicing management activities for improved crop yield. In this study, we developed a protocol for performing 3-D time-lapse electrical resistivity tomography (ERT) at micro scale resolution to monitor the changes in resistivity distribution within the root zone of Orange trees. A total of 40 electrodes, forming a grid of 3.5 m x 2 m around each Orange tree were used in ERT survey with gradient and Wenner configurations. A laboratory test on un-disturbed soil samples of the region was performed to plot the variation of electrical conductivity with saturation. Curve fitting techniques were applied to get the modified Archie's model parameters. The calibrated model was further applied to generate the 3-D soil moisture profiles of the study area. The point estimates of soil moisture were validated using TDR probe measurements at 3 different depths (10, 20, and 40 cm) near to the root zone. In order to understand the effect of soil-water relations on plant-disease relations, we performed ERT analysis at two locations, one at healthy and other at Phytopthora affected Orange tree during the crop cycle, under dry and irrigated conditions. The degree to which an Orange tree is affected by Phytopthora under each condition is evaluated using 'grading scale' approach following visual inspection of the canopy features. Spatial-temporal distribution of moisture profiles is co-related with grading scales to comment on the effect of climatic and irrigation scenarios on the degree and intensity of crop disease caused by Phytopthora.

  18. Multicolor Time-lapse Imaging of Transgenic Zebrafish: Visualizing Retinal Stem Cells Activated by Targeted Neuronal Cell Ablation

    PubMed Central

    Mumm, Jeff S.

    2010-01-01

    High-resolution time-lapse imaging of living zebrafish larvae can be utilized to visualize how biological processes unfold (for review see 1). Compound transgenic fish which express different fluorescent reporters in neighboring cell types provide a means of following cellular interactions 2 and/or tissue-level responses to experimental manipulations over time. In this video, we demonstrate methods that can be used for imaging multiple transgenically labeled cell types serially in individual fish over time courses that can span from minutes to several days. The techniques described are applicable to any study seeking to correlate the "behavior" of neighboring cells types over time, including: 1) serial 'catch and release' methods for imaging a large number of fish over successive days, 2) simplified approaches for separating fluorophores with overlapping excitation/emission profiles (e.g., GFP and YFP), 3) use of hypopigmented mutant lines to extend the time window available for high-resolution imaging into late larval stages of development, 4) use of membrane targeted fluorescent reporters to reveal fine morphological detail of individual cells as well as cellular details in larger populations of cells, and 5) a previously described method for chemically-induced ablation of transgenically targeted cell types; i.e., nitroreductase (NTR) mediated conversion of prodrug substrates, such as metronidazole (MTZ), to cytotoxic derivatives 3,5. As an example of these approaches, we will visualize the ablation and regeneration of a subtype of retinal bipolar neuron within individual fish over several days. Simultaneously we will monitor several other retinal cell types, including neighboring non-targeted bipolar cells and potential degeneration-stimulated retinal stem cells (i.e., Mϋller glia). This strategy is being applied in our lab to characterize cell- and tissue-level (e.g., stem cell niche) responses to the selective loss and regeneration of targeted neuronal cell

  19. Theoretical analysis of long offset time-lapse frequency domain controlled source electromagnetic signals using the method of moments: Application to the monitoring of a land oil reservoir

    NASA Astrophysics Data System (ADS)

    Schamper, C.; Rejiba, F.; Tabbagh, A.; Spitz, S.

    2011-03-01

    We present a sensitivity study applied to water front monitoring of an onshore oil reservoir, using a remote controlled source electromagnetic method (CSEM) with electric dipoles and a borehole-to-surface configuration. We have developed an optimized and parallelized code based on the method of moments, in order to study the influence of several static or time-varying background uncertainties on the time-lapse CSEM signal (also called 4-D CSEM). Analysis of the relative and absolute variations in phase or quadrature of the time-lapse signal induced by the fluid substitution process, inside the reservoir, has shown that the vertical electric dipole allows the shape of the water front to be monitored, while remaining less sensitive (compared to a horizontal electric source dipole) to the total volume of substituted fluid. We have examined the influence of missed anomalies (1-D/3-D), with more or less conductive properties, near to the ground surface or the reservoir, and with or without time-varying properties. In most cases, the 4-D signal behaves like a reliable filter, canceling almost all response anomalies. However, it can also lead to strong, local perturbations of the time-lapse signal. We have also shown that in the presence of steel cased boreholes at the source location, or with outlying steel cased boreholes, the recording of exploitable data does not present insurmountable difficulties at low frequencies (˜1 Hz), and for a dense array of surface receivers. These positive results with CSEM monitoring suggest that minimal, coarse-time 3-D explorations should be used to ensure reliable interpretation of the monitored data.

  20. Time-lapse microscopy and classification of 2D human mesenchymal stem cells based on cell shape picks up myogenic from osteogenic and adipogenic differentiation.

    PubMed

    Seiler, Christof; Gazdhar, Amiq; Reyes, Mauricio; Benneker, Lorin M; Geiser, Thomas; Siebenrock, Klaus A; Gantenbein-Ritter, Benjamin

    2014-09-01

    Current methods to characterize mesenchymal stem cells (MSCs) are limited to CD marker expression, plastic adherence and their ability to differentiate into adipogenic, osteogenic and chondrogenic precursors. It seems evident that stem cells undergoing differentiation should differ in many aspects, such as morphology and possibly also behaviour; however, such a correlation has not yet been exploited for fate prediction of MSCs. Primary human MSCs from bone marrow were expanded and pelleted to form high-density cultures and were then randomly divided into four groups to differentiate into adipogenic, osteogenic chondrogenic and myogenic progenitor cells. The cells were expanded as heterogeneous and tracked with time-lapse microscopy to record cell shape, using phase-contrast microscopy. The cells were segmented using a custom-made image-processing pipeline. Seven morphological features were extracted for each of the segmented cells. Statistical analysis was performed on the seven-dimensional feature vectors, using a tree-like classification method. Differentiation of cells was monitored with key marker genes and histology. Cells in differentiation media were expressing the key genes for each of the three pathways after 21 days, i.e. adipogenic, osteogenic and chondrogenic, which was also confirmed by histological staining. Time-lapse microscopy data were obtained and contained new evidence that two cell shape features, eccentricity and filopodia (= 'fingers') are highly informative to classify myogenic differentiation from all others. However, no robust classifiers could be identified for the other cell differentiation paths. The results suggest that non-invasive automated time-lapse microscopy could potentially be used to predict the stem cell fate of hMSCs for clinical application, based on morphology for earlier time-points. The classification is challenged by cell density, proliferation and possible unknown donor-specific factors, which affect the performance of

  1. Monitoring CO 2 sequestration into deep saline aquifer and associated salt intrusion using coupled multiphase flow modeling and time lapse electrical resistivity tomography

    SciTech Connect

    Chuan Lu; CHI Zhang; Hai Hanag; Timothy C. Johnson

    2014-04-01

    Successful geological storage and sequestration of carbon dioxide (CO2) require efficient monitoring of the migration of CO2 plume during and after large-scale injection in order to verify the containment of the injected CO2 within the target formation and to evaluate potential leakage risk. Field studies have shown that surface and cross-borehole electrical resistivity tomography (ERT) can be a useful tool in imaging and characterizing solute transport in heterogeneous subsurface. In this synthetic study, we have coupled a 3-D multiphase flow model with a parallel 3-D time-lapse ERT inversion code to explore the feasibility of using time-lapse ERT for simultaneously monitoring the migration of CO2 plume in deep saline formation and potential brine intrusion into shallow fresh water aquifer. Direct comparisons of the inverted CO2 plumes resulting from ERT with multiphase flow simulation results indicate the ERT could be used to delineate the migration of CO2 plume. Detailed comparisons on the locations, sizes and shapes of CO2 plume and intruded brine plumes suggest that ERT inversion tends to underestimate the area review of the CO2 plume, but overestimate the thickness and total volume of the CO2 plume. The total volume of intruded brine plumes is overestimated as well. However, all discrepancies remain within reasonable ranges. Our study suggests that time-lapse ERT is a useful monitoring tool in characterizing the movement of injected CO2 into deep saline aquifer and detecting potential brine intrusion under large-scale field injection conditions.

  2. Modeling and mapping the effects of heat and pressure outside a SAGD steam chamber using time-lapse multicomponent seismic data, Athabasca oil sands, Alberta

    NASA Astrophysics Data System (ADS)

    Zeigler, Loren Michelle

    The field of study is a bitumen producing reservoir within the McMurray Formation. The deposit is a part of the Athabasca oil sands trend in Northeastern Alberta, Canada. This field contains 16 well pads that are, combined, producing more than 41,000 BOPD. Bitumen reservoirs are unique as a result of their high viscosity, low API gravity oil. This oil in this field has been produced by means of a method called Steam Assisted Gravity Drainage (SAGD), since 2007. In this method, two vertically stacked, horizontal wells are drilled. The upper well injects high temperature, high pressure steam and as the viscosity of the bitumen decreases it will begin to flow, via gravity, down to the lower producing well. Reservoir monitoring in this field is very important for multiple reasons, including the shallow depth and the large velocity changes that result from SAGD production. In order to map these changes, time-lapse multicomponent data were incorporated with rock physics modeling in order to map and interpret changes in Vp/Vs with production. When fluid substitution results and pressure estimations are combined, the resulting velocities are consistent with the core sample modeling done by Kato et al. (2008). These results were then compared with the seismic data in order to identify areas affected by steam, heat, and pressure within the reservoir through time-lapse Vp/Vs. PP time-lapse results show the location of the steam chamber within the reservoir, however these data do not give any information about the effects of pressure or heat. Converted-wave (PS) data can be used to image pressure and viscosity changes in the reservoir. When these data are combined into a Vp/Vs volume, the effects of steam, heat and pressure can be identified. Vp/Vs areas of little to no difference indicate steamed zones while the surrounding areas with large differences indicate heated and pressured zones.

  3. Dynamic interactions of snow and plants in the boreal forest, winter 2011-2012 revealed by time-lapse photography and LiDAR

    NASA Astrophysics Data System (ADS)

    Filhol, S. V.; Sturm, M.

    2012-12-01

    The winter blanket of snow in the boreal forest is anything but still. In winter 2011-2012 we followed the evolution of a snowpack on a boreal forest plot (0.5 ha) from first snowfall to the beginning of the melt in springtime. We used multiple methods such as time-lapse ground-based LiDAR (Light Detection and Ranging), time-lapse photography, imagery from a suspended cableway, snow-depth sensors, and frequent manual snow-pits. The experimental site is located near Fairbanks, Alaska, a typical boreal forest underlain by permafrost with sparse black spruce, larch, willow, and dwarf birch. We observed snowpack properties to be greatly affected by the vegetation substrate. Interactions between snow and plants are mainly dependent on falling snow properties (rate, wetness), plant heights and stiffness, plant canopy structure (leaves, number of branches, density), succession of weather events (wind before or after snow, thaw events) and pre-existing snow depth. Time-lapse imagery shows interception of snow by trees and shrubs controlled by air-temperature and wind events. LiDAR and snow pit measurements show one class of flexible shrubs (i.e. dwarf birch) bending under load, while a second class (willows) were far stiffer and resisted bending. Where dwarf birch branches were dense, it prevented snow from reaching the ground, leaving a significant air space under the snowpack. This vertical air gap can be as high as 10% of the total snow depth by the end of winter. Improving our understanding of the dynamic relationships between plants and snow is a fundamental key for studying boreal snow physics and snow ecology.

  4. Integrating Terrestrial Time-Lapse Photography with Laser Scanning to Distinguish the Drivers of Movement at Sólheimajökull, Iceland

    NASA Astrophysics Data System (ADS)

    How, P.; James, M. R.; Wynn, P.

    2014-12-01

    Glacier movement is attributed to a sensitive configuration of driving forces. Here, we present an approach designed to evaluate the drivers of movement at Sólheimajökull, an outlet glacier from the Myrdalsjökull ice cap, Iceland, through combining terrestrial time-lapse photography and laser scanning (TLS). A time-lapse camera (a dSLR with intervalometer and solar-recharged battery power supply) collected hourly data over the summer of 2013. The data are subject to all the difficulties that are usually present in long time-lapse sequences, such as highly variable illumination and visibility conditions, evolving surfaces, and camera instabilities. Feature-tracking software [1] was used to: 1) track regions of static topography (e.g. the skyline) from which camera alignment could be continuously updated throughout the sequence; and 2) track glacial surface features for velocity estimation. Absolute georeferencing of the image sequence was carried out by registering the camera to a TLS survey acquired at the beginning of the monitoring period. A second TLS survey (July 2013) provided an additional 3D surface. By assuming glacial features moved in approximately planimetrically straight lines between the two survey dates, combining the two TLS surfaces with the monoscopic feature tracking allows 3D feature tracks to be derived. Such tracks will enable contributions from different drivers (e.g. surface melting) to be extracted, even in imagery that is acquired not perpendicular to glacier motion. At Sólheimajökull, our aim is to elucidate any volcanic contribution to the observed movement.[1] http://www.lancaster.ac.uk/staff/jamesm/software/pointcatcher.htm

  5. The Relationship between Cell Number, Division Behavior and Developmental Potential of Cleavage Stage Human Embryos: A Time-Lapse Study

    PubMed Central

    Gong, Fei; Lu, Changfu; Zhang, Shuoping; Lu, Guangxiu; Lin, Ge

    2016-01-01

    Day 3 cleavage embryo transfer is routine in many assisted reproductive technology centers today. Embryos are usually selected according to cell number, cell symmetry and fragmentation for transfer. Many studies have showed the relationship between cell number and embryo developmental potential. However, there is limited understanding of embryo division behavior and their association with embryo cell number and developmental potential. A retrospective and observational study was conducted to investigate how different division behaviors affect cell number and developmental potential of day 3 embryos by time-lapse imaging. Based on cell number at day 3, the embryos (from 104 IVF/intracytoplasmic sperm injection (ICSI) treatment cycles, n = 799) were classified as follows: less than 5 cells (< 5C; n = 111); 5–6 cells (5–6C; n = 97); 7–8 cells (7–8C; n = 442), 9–10 cells (9–10C; n = 107) and more than 10 cells (>10C; n = 42). Division behavior, morphokinetic parameters and blastocyst formation rate were analyzed in 5 groups of day 3 embryos with different cell numbers. In <5C and 5–6C embryos, fragmentation (FR; 62.2% and 30.9%, respectively) was the main cause for low cell number. The majority of 7–8C embryos exhibited obvious normal behaviors (NB; 85.7%) during development. However, the incidence of DC in 9–10C and >10C embryos increased compared to 7–8C embryos (45.8%, 33.3% vs. 11.1%, respectively). In ≥5C embryos, FR and DC significantly reduced developmental potential, whereas <5C embryos showed little potential irrespective of division behaviors. In NB embryos, the blastocyst formation rate increased with cell number from 7.4% (<5C) to 89.3% (>10C). In NB embryos, the cell cycle elongation or shortening was the main cause for abnormally low or high cell number, respectively. After excluding embryos with abnormal division behaviors, the developmental potential, implantation rate and live birth rate of day 3 embryos increased with cell number

  6. Analysis of one year time-lapse electrical data to unravel hydrological processes acting on a clayey landslide

    NASA Astrophysics Data System (ADS)

    Gance, J.; Sailhac, P.; Malet, J.; Supper, R.; Jochum, B.; Ottowitz, D.; Grandjean, G.

    2013-12-01

    Movements of water in the topsoil (infiltration, run-off and evaporation) influence changes in slope stability which is the main controlling factor of landslide triggering (e.g. van Asch et al., 1999). Among the petrophysical parameters that can provide time-lapse sections of the topsoil, we consider the electrical conductivity for its sensitivity to soil water contents. Based on recent works which showed the possibility of monitoring the hydrological response of a clay-shale slope to a controlled rainfall experiment (Travelletti et al., 2012), we installed a permanent electrical monitoring experiment at the Super-Sauze landslide for long-term monitoring (one year) of natural meteorological events. We used the GEOMON4D resistivimeter, developed by the Austrian Geological Survey (Vienna, Austria) for experiments needing high rate of data acquisition, records of full signal samples for noise detection, remote controlled management and automatic data transfer (Supper et al., 2002, 2003 & 2004). The electrode positions varying with time, we installed two terrestrial optical cameras to characterize the changes in dipole geometry. Several hydrological sensors were installed along the profile to measure soil temperature, water temperature and conductivity, ground water level and soil humidity in the vadose zone. The main challenge is the processing of ca. 4.2 million of electrical resistivity data. In this difficult context, the potential factors influencing electrical resistivity with time without modification of soil saturation are the relative changes in the dipole geometry (linked to the displacement of the electrodes), changes in soil and water temperature, change in material porosity due to compaction/dilatation caused by the landslide movement. Therefore, before any inversion of data, we verify the presence of possible 3D effects, and assess the measurement accuracy and uncertainty. An apparent resistivity variation threshold, from which a modification of the

  7. The Relationship between Cell Number, Division Behavior and Developmental Potential of Cleavage Stage Human Embryos: A Time-Lapse Study.

    PubMed

    Kong, Xiangyi; Yang, Shuting; Gong, Fei; Lu, Changfu; Zhang, Shuoping; Lu, Guangxiu; Lin, Ge

    2016-01-01

    Day 3 cleavage embryo transfer is routine in many assisted reproductive technology centers today. Embryos are usually selected according to cell number, cell symmetry and fragmentation for transfer. Many studies have showed the relationship between cell number and embryo developmental potential. However, there is limited understanding of embryo division behavior and their association with embryo cell number and developmental potential. A retrospective and observational study was conducted to investigate how different division behaviors affect cell number and developmental potential of day 3 embryos by time-lapse imaging. Based on cell number at day 3, the embryos (from 104 IVF/intracytoplasmic sperm injection (ICSI) treatment cycles, n = 799) were classified as follows: less than 5 cells (< 5C; n = 111); 5-6 cells (5-6C; n = 97); 7-8 cells (7-8C; n = 442), 9-10 cells (9-10C; n = 107) and more than 10 cells (>10C; n = 42). Division behavior, morphokinetic parameters and blastocyst formation rate were analyzed in 5 groups of day 3 embryos with different cell numbers. In <5C and 5-6C embryos, fragmentation (FR; 62.2% and 30.9%, respectively) was the main cause for low cell number. The majority of 7-8C embryos exhibited obvious normal behaviors (NB; 85.7%) during development. However, the incidence of DC in 9-10C and >10C embryos increased compared to 7-8C embryos (45.8%, 33.3% vs. 11.1%, respectively). In ≥5C embryos, FR and DC significantly reduced developmental potential, whereas <5C embryos showed little potential irrespective of division behaviors. In NB embryos, the blastocyst formation rate increased with cell number from 7.4% (<5C) to 89.3% (>10C). In NB embryos, the cell cycle elongation or shortening was the main cause for abnormally low or high cell number, respectively. After excluding embryos with abnormal division behaviors, the developmental potential, implantation rate and live birth rate of day 3 embryos increased with cell number.

  8. Time-lapse Monitoring of Geotechnical Properties of Heritage Earthworks by Means of Near-Surface Seismic Techniques

    NASA Astrophysics Data System (ADS)

    Bergamo, P.; Donohue, S.; Gunn, D.; Dashwood, B.

    2014-12-01

    Surface wave (SW) method and P-wave refraction tomography are widely spread methods for the characterization of the near-surface. We applied these techniques to a 1-year time-lapse monitoring of the geotechnical properties of a heritage earthwork at risk of failure, a stretch of the embankment of the Gloucestershire-Warwickshire railway in Laverton, UK. Like a significant part of UK railway network, this line was built in the early 20th century without modern construction standards. Poor maintenance and the increase in extreme weather events due to recent climate change have further compromised its stability. The aim of this monitoring campaign is to assess the capability of non-invasive and repeatable geophysical methods to measure temporal changes of mechanical parameters of earthworks. MASW (multichannel analysis of SW) and P-wave refraction data were repeatedly acquired along a 100 m line on the crest of the embankment, every other month from July 2013 to July 2014. Smaller scale seismic data were also recorded on the flanks of the embankment. Sensors measuring climate -temperature, precipitation, solar radiation - and geotechnical parameters - water content, suction - were installed at various locations and depths within the embankment. Moreover, penetrometric data were acquired, soil samples were analysed. SW data were analysed in terms of phase velocity and attenuation. Hodocrones, dispersion and attenuation curves show a limited but continuous seasonal change. SW dispersion curves and P-wave travel times were separately inverted for VS and VP models with a laterally constrained and a tomographic approach, respectively. The VS and VP sections describe the temporal variation of seismic properties of the embankment, consistent with the climate trend. Such results were jointly interpreted with data from field sensors and cone penetration testing. This calibration stage provides a geotechnical model that explains the temporal variations of seismic velocities

  9. Oriented cell divisions and cellular morphogenesis in the zebrafish gastrula and neurula: a time-lapse analysis.

    PubMed

    Concha, M L; Adams, R J

    1998-03-01

    We have taken advantage of the optical transparency of zebrafish embryos to investigate the patterns of cell division, movement and shape during early stages of development of the central nervous system. The surface-most epiblast cells of gastrula and neurula stage embryos were imaged and analysed using a computer-based, time-lapse acquisition system attached to a differential interference contrast (DIC) microscope. We find that the onset of gastrulation is accompanied by major changes in cell behaviour. Cells collect into a cohesive sheet, apparently losing independent motility and integrating their behaviour to move coherently over the yolk in a direction that is the result of two influences: towards the vegetal pole in the movements of epiboly and towards the dorsal midline in convergent movements that strengthen throughout gastrulation. Coincidentally, the plane of cell division becomes aligned to the surface plane of the embryo and oriented in the anterior-posterior (AP) direction. These behaviours begin at the blastoderm margin and propagate in a gradient towards the animal pole. Later in gastrulation, cells undergo increasingly mediolateral-directed elongation and autonomous convergence movements towards the dorsal midline leading to an enormous extension of the neural axis. Around the equator and along the dorsal midline of the gastrula, persistent AP orientation of divisions suggests that a common mechanism may be involved but that neither oriented cell movements nor shape can account for this alignment. When the neural plate begins to differentiate, there is a gradual transition in the direction of cell division from AP to the mediolateral circumference (ML). ML divisions occur in both the ventral epidermis and dorsal neural plate. In the neural plate, ML becomes the predominant orientation of division during neural keel and nerve rod stages and, from late neural keel stage, divisions are concentrated at the dorsal midline and generate bilateral progeny

  10. Time lapse imaging of water content with geoelectrical methods: on the interest of working with absolute water content data

    NASA Astrophysics Data System (ADS)

    Dumont, Gaël; Pilawski, Tamara; Robert, Tanguy; Hermans, Thomas; Garré, Sarah; Nguyen, Frederic

    2016-04-01

    The electrical resistivity tomography is a suitable method to estimate the water content of a waste material and detect changes in water content. Various ERT profiles, both static data and time-lapse, where acquired on a landfill during the Minerve project. In the literature, the relative change of resistivity (Δρ/ρ) is generally computed. For saline or heat tracer tests in the saturated zone, the Δρ/ρ can be easily translated into pore water conductivity or underground temperature changes (provided that the initial salinity or temperature condition is homogeneous over the ERT panel extension). For water content changes in the vadose zone resulting of an infiltration event or injection experiment, many authors also work with the Δρ/ρ or relative changes of water content Δθ/θ (linked to the change of resistivity through one single parameter: the Archie's law exponent "m"). This parameter is not influenced by the underground temperature and pore fluid conductivity (ρ¬w) condition but is influenced by the initial water content distribution. Therefore, you never know if the loss of Δθ/θ signal is representative of the limit of the infiltration front or more humid initial condition. Another approach for the understanding of the infiltration process is the assessment of the absolute change of water content (Δθ). This requires the direct computation of the water content of the waste from the resistivity data. For that purpose, we used petrophysical laws calibrated with laboratory experiments and our knowledge of the in situ temperature and pore fluid conductivity parameters. Then, we investigated water content changes in the waste material after a rainfall event (Δθ= Δθ/θ* θ). This new observation is really representatives of the quantity of water infiltrated in the waste material. However, the uncertainty in the pore fluid conductivity value may influence the computed water changes (Δθ=k*m√(ρw) ; where "m" is the Archie's law exponent

  11. Monitoring CO2 Storage at Cranfield, Mississippi with Time-Lapse Offset VSP – Using Integration and Modeling to Reduce Uncertainty

    SciTech Connect

    Daley, Thomas M.; Hendrickson, Joel; Queen, John H.

    2014-12-31

    A time-lapse Offset Vertical Seismic Profile (OVSP) data set was acquired as part of a subsurface monitoring program for geologic sequestration of CO2. The storage site at Cranfield, near Natchez, Mississippi, is part of a detailed area study (DAS) site for geologic carbon sequestration operated by the U.S. Dept. of Energy’s Southeast Regional Carbon Sequestration Partnership (SECARB). The DAS site includes three boreholes, an injection well and two monitoring wells. The project team selected the DAS site to examine CO2 sequestration multiphase fluid flow and pressure at the interwell scale in a brine reservoir. The time-lapse (TL) OVSP was part of an integrated monitoring program that included well logs, crosswell seismic, electrical resistance tomography and 4D surface seismic. The goals of the OVSP were to detect the CO2 induced change in seismic response, give information about the spatial distribution of CO2 near the injection well and to help tie the high-resolution borehole monitoring to the 4D surface data. The VSP data were acquired in well CFU 31-F1, which is the ~3200 m deep CO2 injection well at the DAS site. A preinjection survey was recorded in late 2009 with injection beginning in December 2009, and a post injection survey was conducted in Nov 2010 following injection of about 250 kT of CO2. The sensor array for both surveys was a 50-level, 3-component, Sercel MaxiWave system with 15 m (49 ft) spacing between levels. The source for both surveys was an accelerated weight drop, with different source trucks used for the two surveys. Consistent time-lapse processing was applied to both data sets. Time-lapse processing generated difference corridor stacks to investigate CO2 induced reflection amplitude changes from each source point. Corridor stacks were used for amplitude analysis to maximize the signal-to-noise ratio (S/N) for each shot point. Spatial variation in

  12. Monitoring CO2 Storage at Cranfield, Mississippi with Time-Lapse Offset VSP – Using Integration and Modeling to Reduce Uncertainty

    DOE PAGES

    Daley, Thomas M.; Hendrickson, Joel; Queen, John H.

    2014-12-31

    A time-lapse Offset Vertical Seismic Profile (OVSP) data set was acquired as part of a subsurface monitoring program for geologic sequestration of CO2. The storage site at Cranfield, near Natchez, Mississippi, is part of a detailed area study (DAS) site for geologic carbon sequestration operated by the U.S. Dept. of Energy’s Southeast Regional Carbon Sequestration Partnership (SECARB). The DAS site includes three boreholes, an injection well and two monitoring wells. The project team selected the DAS site to examine CO2 sequestration multiphase fluid flow and pressure at the interwell scale in a brine reservoir. The time-lapse (TL) OVSP was partmore » of an integrated monitoring program that included well logs, crosswell seismic, electrical resistance tomography and 4D surface seismic. The goals of the OVSP were to detect the CO2 induced change in seismic response, give information about the spatial distribution of CO2 near the injection well and to help tie the high-resolution borehole monitoring to the 4D surface data. The VSP data were acquired in well CFU 31-F1, which is the ~3200 m deep CO2 injection well at the DAS site. A preinjection survey was recorded in late 2009 with injection beginning in December 2009, and a post injection survey was conducted in Nov 2010 following injection of about 250 kT of CO2. The sensor array for both surveys was a 50-level, 3-component, Sercel MaxiWave system with 15 m (49 ft) spacing between levels. The source for both surveys was an accelerated weight drop, with different source trucks used for the two surveys. Consistent time-lapse processing was applied to both data sets. Time-lapse processing generated difference corridor stacks to investigate CO2 induced reflection amplitude changes from each source point. Corridor stacks were used for amplitude analysis to maximize the signal-to-noise ratio (S/N) for each shot point. Spatial variation in reflectivity (used to ‘map’ the plume) was similar in magnitude to the

  13. Application of Time-Lapse Seismic Monitoring for the Control and Optimization of CO2 Enhanced Oil Recovery Operations

    SciTech Connect

    Brian Toelle

    2008-11-30

    This project, 'Application of Time-Lapse Seismic Monitoring for the Control and Optimization of CO{sub 2} Enhanced Oil Recovery Operations', investigated the potential for monitoring CO{sub 2} floods in carbonate reservoirs through the use of standard p-wave seismic data. This primarily involved the use of 4D seismic (time lapse seismic) in an attempt to observe and map the movement of the injected CO{sub 2} through a carbonate reservoir. The differences between certain seismic attributes, such as amplitude, were used for this purpose. This technique has recently been shown to be effective in CO{sub 2} monitoring in Enhanced Oil Recovery (EOR) projects, such as Weyborne. This study was conducted in the Charlton 30/31 field in the northern Michigan Basin, which is a Silurian pinnacle reef that completed its primary production in 1997 and was scheduled for enhanced oil recovery using injected CO{sub 2}. Prior to injection an initial 'Base' 3D survey was obtained over the field and was then processed and interpreted. CO{sub 2} injection within the main portion of the reef was conducted intermittently during 13 months starting in August 2005. During this time, 29,000 tons of CO{sub 2} was injected into the Guelph formation, historically known as the Niagaran Brown formation. By September 2006, the reservoir pressure within the reef had risen to approximately 2000 lbs and oil and water production from the one producing well within the field had increased significantly. The determination of the reservoir's porosity distribution, a critical aspect of reservoir characterization and simulation, proved to be a significant portion of this project. In order to relate the differences observed between the seismic attributes seen on the multiple 3D seismic surveys and the actual location of the CO{sub 2}, a predictive reservoir simulation model was developed based on seismic attributes obtained from the base 3D seismic survey and available well data. This simulation predicted

  14. Study of time-lapse processing for dynamic hydrologic conditions. [electronic satellite image analysis console for Earth Resources Technology Satellites imagery

    NASA Technical Reports Server (NTRS)

    Serebreny, S. M.; Evans, W. E.; Wiegman, E. J.

    1974-01-01

    The usefulness of dynamic display techniques in exploiting the repetitive nature of ERTS imagery was investigated. A specially designed Electronic Satellite Image Analysis Console (ESIAC) was developed and employed to process data for seven ERTS principal investigators studying dynamic hydrological conditions for diverse applications. These applications include measurement of snowfield extent and sediment plumes from estuary discharge, Playa Lake inventory, and monitoring of phreatophyte and other vegetation changes. The ESIAC provides facilities for storing registered image sequences in a magnetic video disc memory for subsequent recall, enhancement, and animated display in monochrome or color. The most unique feature of the system is the capability to time lapse the imagery and analytic displays of the imagery. Data products included quantitative measurements of distances and areas, binary thematic maps based on monospectral or multispectral decisions, radiance profiles, and movie loops. Applications of animation for uses other than creating time-lapse sequences are identified. Input to the ESIAC can be either digital or via photographic transparencies.

  15. Incubator-independent cell-culture perfusion platform for continuous long-term microelectrode array electrophysiology and time-lapse imaging

    PubMed Central

    Saalfrank, Dirk; Konduri, Anil Krishna; Latifi, Shahrzad; Habibey, Rouhollah; Golabchi, Asiyeh; Martiniuc, Aurel Vasile; Knoll, Alois; Ingebrandt, Sven; Blau, Axel

    2015-01-01

    Most in vitro electrophysiology studies extract information and draw conclusions from representative, temporally limited snapshot experiments. This approach bears the risk of missing decisive moments that may make a difference in our understanding of physiological events. This feasibility study presents a simple benchtop cell-culture perfusion system adapted to commercial microelectrode arrays (MEAs), multichannel electrophysiology equipment and common inverted microscopy stages for simultaneous and uninterrupted extracellular electrophysiology and time-lapse imaging at ambient CO2 levels. The concept relies on a transparent, replica-casted polydimethylsiloxane perfusion cap, gravity- or syringe-pump-driven perfusion and preconditioning of pH-buffered serum-free cell-culture medium to ambient CO2 levels at physiological temperatures. The low-cost microfluidic in vitro enabling platform, which allows us to image cultures immediately after cell plating, is easy to reproduce and is adaptable to the geometries of different cell-culture containers. It permits the continuous and simultaneous multimodal long-term acquisition or manipulation of optical and electrophysiological parameter sets, thereby considerably widening the range of experimental possibilities. Two exemplary proof-of-concept long-term MEA studies on hippocampal networks illustrate system performance. Continuous extracellular recordings over a period of up to 70 days revealed details on both sudden and gradual neural activity changes in maturing cell ensembles with large intra-day fluctuations. Correlated time-lapse imaging unveiled rather static macroscopic network architectures with previously unreported local morphological oscillations on the timescale of minutes. PMID:26543581

  16. Automated profiling of individual cell–cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING)

    PubMed Central

    Merouane, Amine; Rey-Villamizar, Nicolas; Lu, Yanbin; Liadi, Ivan; Romain, Gabrielle; Lu, Jennifer; Singh, Harjeet; Cooper, Laurence J.N.; Varadarajan, Navin; Roysam, Badrinath

    2015-01-01

    Motivation: There is a need for effective automated methods for profiling dynamic cell–cell interactions with single-cell resolution from high-throughput time-lapse imaging data, especially, the interactions between immune effector cells and tumor cells in adoptive immunotherapy. Results: Fluorescently labeled human T cells, natural killer cells (NK), and various target cells (NALM6, K562, EL4) were co-incubated on polydimethylsiloxane arrays of sub-nanoliter wells (nanowells), and imaged using multi-channel time-lapse microscopy. The proposed cell segmentation and tracking algorithms account for cell variability and exploit the nanowell confinement property to increase the yield of correctly analyzed nanowells from 45% (existing algorithms) to 98% for wells containing one effector and a single target, enabling automated quantification of cell locations, morphologies, movements, interactions, and deaths without the need for manual proofreading. Automated analysis of recordings from 12 different experiments demonstrated automated nanowell delineation accuracy >99%, automated cell segmentation accuracy >95%, and automated cell tracking accuracy of 90%, with default parameters, despite variations in illumination, staining, imaging noise, cell morphology, and cell clustering. An example analysis revealed that NK cells efficiently discriminate between live and dead targets by altering the duration of conjugation. The data also demonstrated that cytotoxic cells display higher motility than non-killers, both before and during contact. Contact: broysam@central.uh.edu or nvaradar@central.uh.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:26059718

  17. An ensemble Kalman filter approach to identify the hydraulic conductivity spatial distribution from electrical resistivity tomography time-lapse monitoring of three-dimensional tracer test experiments

    NASA Astrophysics Data System (ADS)

    Camporese, M.; Cassiani, G.; Deiana, R.; Perri, M. T.; Salandin, P.

    2012-04-01

    An approach based on the Lagrangian formulation of transport and the ensemble Kalman filter (EnKF) is applied to assess the spatial distribution of hydraulic conductivity K by assimilating time-lapse cross-hole electrical resistivity tomography (ERT) images generated for a synthetic tracer test in a heterogeneous aquifer. Assuming that the solute spreads as a passive tracer, for high Peclet numbers the spatial moments of the evolving plume are dominated by the spatial distribution of the hydraulic conductivity. The assimilation of the electrical conductivity 4D images allows updating both the hydrological state in terms of solute concentration and the spatial distribution of K. Thus, delineation of the tracer plume and estimation of the aquifer heterogeneity at the local scale can be achieved at the same time by means of this interpretation of time-lapse electrical images from tracer tests. We assess the impact on the performance of the hydrological inversion of the uncertainty inherently affecting ERT inversions in terms of tracer concentration and the choice of the prior statistics of K. The results show that realistic ERT images can be integrated into a hydrological model even within an uncoupled inverse modeling framework, the reconstruction of the hydraulic conductivity spatial distribution being satisfactory in the portion of the domain directly covered by the passage of the tracer. Aside from the issues commonly affecting inverse models, the proposed approach is subject to the problem of the filter inbreeding and the retrieval performance is sensitive to the choice of K prior geostatistical parameters.

  18. In-vivo third-harmonic generation microscopy at 1550nm three-dimensional long-term time-lapse studies in living C. elegans embryos

    NASA Astrophysics Data System (ADS)

    Aviles-Espinosa, Rodrigo; Santos, Susana I. C. O.; Brodschelm, Andreas; Kaenders, Wilhelm G.; Alonso-Ortega, Cesar; Artigas, David; Loza-Alvarez, Pablo

    2011-03-01

    In-vivo microscopic long term time-lapse studies require controlled imaging conditions to preserve sample viability. Therefore it is crucial to meet specific exposure conditions as these may limit the applicability of established techniques. In this work we demonstrate the use of third harmonic generation (THG) microscopy for long term time-lapse three-dimensional studies (4D) in living Caenorhabditis elegans embryos employing a 1550 nm femtosecond fiber laser. We take advantage of the fact that THG only requires the existence of interfaces to generate signal or a change in the refractive index or in the χ3 nonlinear coefficient, therefore no markers are required. In addition, by using this wavelength the emitted THG signal is generated at visible wavelengths (516 nm) enabling the use of standard collection optics and detectors operating near their maximum efficiency. This enables the reduction of the incident light intensity at the sample plane allowing to image the sample for several hours. THG signal is obtained through all embryo development stages, providing different tissue/structure information. By means of control samples, we demonstrate that the expected water absorption at this wavelength does not severely compromise sample viability. Certainly, this technique reduces the complexity of sample preparation (i.e. genetic modification) required by established linear and nonlinear fluorescence based techniques. We demonstrate the non-invasiveness, reduced specimen interference, and strong potential of this particular wavelength to be used to perform long-term 4D recordings.

  19. Peculiar lapse of periodic eclipsing event at low-mass X-ray binary GRS 1747-312 during Suzaku observation in 2009

    NASA Astrophysics Data System (ADS)

    Saji, Shigetaka; Mori, Hideyuki; Matsumoto, Hironori; Dotani, Tadayasu; Iwai, Masachika; Maeda, Yoshitomo; Mitsuishi, Ikuyuki; Ozaki, Masanobu; Tawara, Yuzuru

    2016-06-01

    GRS 1747-312 is a neutron star low-mass X-ray binary in the globular cluster Terzan 6, located at a distance of 9.5 kpc from the Earth. During its outbursts, periodic eclipses were known to occur. Observations for the outbursts were performed with Chandra in 2004 and Swift in 2013. XMM-Newton observed its quiescent state in 2004. In addition, when Suzaku observed it in 2009 as a part of Galactic center mapping observations, GRS 1747-312 was found to be in a low-luminosity state with Lx ˜ 1.2 × 1035 erg s-1. All of the observations except for XMM-Newton included the time of the eclipses predicted. We analyzed archival data of these observations. During the Chandra and Swift observations, we found clear flux decreases at the expected time of the eclipses. During the Suzaku observation, however, there were no clear signs for the predicted eclipses. The lapse of the predicted eclipses during the Suzaku observation can be explained by a contaminant source quite close to GRS 1747-312. When GRS 1747-312 is in the quiescent state, we observe X-rays from the contaminant source rather than from GRS 1747-312. However, we have no clear evidence for the contaminant source in our data. The lapse might also be explained by thick material (NH > 1024 cm-2) between the neutron star and the companion star, though the origin of the thick material is not clear.

  20. Deriving Macropore and Preferential Flow Parameters from Tracer and Time-lapse 3D GPR Experiments at the Plot-Scale

    NASA Astrophysics Data System (ADS)

    Jackisch, Conrad; Allroggen, Niklas; Tronicke, Jens; Zehe, Erwin

    2014-05-01

    "Hydrology - a science in which all processes are preferential" (Uhlenbrook, 2006) - as such preferential flow is known and discussed in hydrology since almost three decades. At the same time, preferential flow remains problematic as explicit descriptions are hard to define and upscale and implicit descriptions remain rather case sensitive. Moreover, our techniques to monitor preferential flow and especially flow structures are very limited. We conducted three multi-tracer plot-scale (1m x 1m) sprinkler experiments at a forested hillslope in the Attert Basin in Luxembourg with prevailing geogenic and biogenic preferential flow structures. It was accompanied by a 3D time-lapse GPR (Ground Penetrating Radar) survey covering an area of 3m x 3m. We present the results with special emphasis on the derivation of macropore parameters for further modelling. To do so, we developed an automated analysis of images from excavated Brilliant Blue stained profiles. Additionally, we analyse our time-lapse GPR data with respect to temporal changes and derive 3D strutural information of the preferential flow patterns. Superior to tracers, this high resolution subsurface imaging technique is non-invasive, repeatable and therefore helps to disentangle the dye stained patterns towards process observation. The results of the image analyses and the GPR surveys are compared and referenced to soil moisture monitoring, sampled Bromide profiles and stable isotope signatures. We further discuss implications for joint development of model concepts and observation methods.

  1. Incubator-independent cell-culture perfusion platform for continuous long-term microelectrode array electrophysiology and time-lapse imaging.

    PubMed

    Saalfrank, Dirk; Konduri, Anil Krishna; Latifi, Shahrzad; Habibey, Rouhollah; Golabchi, Asiyeh; Martiniuc, Aurel Vasile; Knoll, Alois; Ingebrandt, Sven; Blau, Axel

    2015-06-01

    Most in vitro electrophysiology studies extract information and draw conclusions from representative, temporally limited snapshot experiments. This approach bears the risk of missing decisive moments that may make a difference in our understanding of physiological events. This feasibility study presents a simple benchtop cell-culture perfusion system adapted to commercial microelectrode arrays (MEAs), multichannel electrophysiology equipment and common inverted microscopy stages for simultaneous and uninterrupted extracellular electrophysiology and time-lapse imaging at ambient CO2 levels. The concept relies on a transparent, replica-casted polydimethylsiloxane perfusion cap, gravity- or syringe-pump-driven perfusion and preconditioning of pH-buffered serum-free cell-culture medium to ambient CO2 levels at physiological temperatures. The low-cost microfluidic in vitro enabling platform, which allows us to image cultures immediately after cell plating, is easy to reproduce and is adaptable to the geometries of different cell-culture containers. It permits the continuous and simultaneous multimodal long-term acquisition or manipulation of optical and electrophysiological parameter sets, thereby considerably widening the range of experimental possibilities. Two exemplary proof-of-concept long-term MEA studies on hippocampal networks illustrate system performance. Continuous extracellular recordings over a period of up to 70 days revealed details on both sudden and gradual neural activity changes in maturing cell ensembles with large intra-day fluctuations. Correlated time-lapse imaging unveiled rather static macroscopic network architectures with previously unreported local morphological oscillations on the timescale of minutes.

  2. Modeling a Combined Tracer and Time-Lapse Radar Imaging Test in the Heterogeneous Fluvial Aquifer at the Boise Hydrogeophysical Research Site

    NASA Astrophysics Data System (ADS)

    Leven, C.; Barrash, W.; Hyndman, D. W.; Johnson, T. C.

    2002-12-01

    Detailed characterization of aquifer heterogeneity is critical for the design and reliable monitoring of contaminant remediation systems. Traditional characterization efforts have been limited by the local nature of core measurements, and the inability to sample volumes between wells. A promising new approach for the detection and determination of fluid and solute movement involves time-lapse geophysical imaging of subsurface volumes in conjunction with borehole-based hydrogeological investigation techniques. This approach shows promise for quantifying the spatial distribution of flow and transport parameters of aquifer material between wells. A combined tracer and time-lapse radar imaging experiment was conducted in the unconfined coarse fluvial aquifer at the Boise Hydrogeophysical Research Site in August, 2001. Potassium bromide tracer was injected to form an electrically conductive plume over a 4-m interval that spanned the contact between two hydrostratigraphic units. Data from hydrogeologic and geophysical investigation methods indicate that these units: are continuous between the wells, have contrasting average permeability and porosity between units, and have variable porosity and permeability within units (i.e., heterogeneity at multiple scales from <2m to >20m). During the two-week field experiment the tracer plume traveled 6.9 m from the injection well to the extraction well, passing through a central monitoring well with 20 sampling zones over a 5-m interval spanning the injection interval. Cross borehole radar data were collected periodically on cross-sectional and longitudinal planes through the tracer plume. Two of these tomographic planes passed through the central monitoring well for quantitative calibration of radar attenuation tomograms to measured solute concentrations. Bromide breakthrough at the central well occurred first and with greatest concentration in the higher conductivity unit as expected, with significant variability in peak time and

  3. LONG-TERM OBSERVATIONS OF BOTTOM CONDITIONS AND SEDIMENT MOVEMENT ON THE ATLANTIC CONTINENTAL SHELF: TIME-LAPSE PHOTOGRAPHY FROM INSTRUMENTED TRIPODS.

    USGS Publications Warehouse

    Butman, Bradford; Bryden, Cynthia G.; Pfirman, Stephanie L.; Strahle, William J.; Noble, Marlene A.

    1984-01-01

    An instrument system that measures bottom current, temperature, light transmission, and pressure, and that photographs the bottom at 2- to 6-hour intervals has been developed to study sediment transport on the Atlantic Continental Shelf. Instruments have been deployed extensively along the United States East Coast Continental Shelf for periods of from 2 to 6 months to study the frequency, direction, and rate of bottom sediment movement, and the processes causing movement. The time-lapse photographs are used to (1) characterize the bottom benthic community and surface microtopography; (2) monitor changes in the bottom topography and near-bottom water column caused by currents and storms (for example, ripple generation and migration, sediment resuspension); and (3) monitor seasonal changes in the bottom benthic community and qualitative effects of this community on the bottom sediments.

  4. Time-lapse imagery of the breaching of Marmot Dam, Oregon, and subsequent erosion of sediment by the Sandy River, October 2007 to May 2008

    USGS Publications Warehouse

    Major, Jon J.; Spicer, Kurt R.; Collins, Rebecca A.

    2010-01-01

    In 2007, Marmot Dam on the Sandy River, Oregon, was removed and a temporary cofferdam standing in its place was breached, allowing the river to flow freely along its entire length. Time-lapse imagery obtained from a network of digital single-lens reflex cameras placed around the lower reach of the sediment-filled reservoir behind the dam details rapid erosion of sediment by the Sandy River after breaching of the cofferdam. Within hours of the breaching, the Sandy River eroded much of the nearly 15-m-thick frontal part of the sediment wedge impounded behind the former concrete dam; within 24-60 hours it eroded approximately 125,000 m3 of sediment impounded in the lower 300-meter-reach of the reservoir. The imagery shows that the sediment eroded initially through vertical incision, but that lateral erosion rapidly became an important process.

  5. Time lapse imaging analysis of the effect of ER stress modulators on apoptotic cell assessed by caspase3/7 activation in NG108-15 cells

    PubMed Central

    Saito, Ayako; Suga, Kei; Ono-Nakagawa, Risa; Sanada, Masumi; Akagawa, Kimio

    2015-01-01

    This paper reports the data from the long term time lapse imaging of neuronal cell line NG108-15 that were treated with apoptosis inducer or various ER stress inducers. Use of the fluorescent reporter for activated caspase3/7 in combination with the conventional light microscope allowed us to investigate the time course of apoptosis induction at the single cell level. Quantitative as well as qualitative data are presented here to show the effect of two different ER stress modulating chemical compounds on caspase3/7-dependent apoptosis in neuronal cell line NG108-15 cells. Additional results and interpretation of our data concerning ER stress and apoptosis in NG108-15 cells can be found in Suga et al. (2015) [1] and in Suga et al. (2015) [2]. PMID:26759824

  6. Label free cell-tracking and division detection based on 2D time-lapse images for lineage analysis of early embryo development.

    PubMed

    Cicconet, Marcelo; Gutwein, Michelle; Gunsalus, Kristin C; Geiger, Davi

    2014-08-01

    In this paper we report a database and a series of techniques related to the problem of tracking cells, and detecting their divisions, in time-lapse movies of mammalian embryos. Our contributions are (1) a method for counting embryos in a well, and cropping each individual embryo across frames, to create individual movies for cell tracking; (2) a semi-automated method for cell tracking that works up to the 8-cell stage, along with a software implementation available to the public (this software was used to build the reported database); (3) an algorithm for automatic tracking up to the 4-cell stage, based on histograms of mirror symmetry coefficients captured using wavelets; (4) a cell-tracking database containing 100 annotated examples of mammalian embryos up to the 8-cell stage; and (5) statistical analysis of various timing distributions obtained from those examples. PMID:24873887

  7. Label Free Cell-Tracking and Division Detection Based on 2D Time-Lapse Images For Lineage Analysis of Early Embryo Development

    PubMed Central

    Cicconet, Marcelo; Gutwein, Michelle; Gunsalus, Kristin C; Geiger, Davi

    2014-01-01

    In this paper we report a database and a series of techniques related to the problem of tracking cells, and detecting their divisions, in time-lapse movies of mammalian embryos. Our contributions are: (1) a method for counting embryos in a well, and cropping each individual embryo across frames, to create individual movies for cell tracking; (2) a semi-automated method for cell tracking that works up to the 8-cell stage, along with a software implementation available to the public (this software was used to build the reported database); (3) an algorithm for automatic tracking up to the 4-cell stage, based on histograms of mirror symmetry coefficients captured using wavelets; (4) a cell-tracking database containing 100 annotated examples of mammalian embryos up to the 8-cell stage; (5) statistical analysis of various timing distributions obtained from those examples. PMID:24873887

  8. Realtime infiltration process monitoring in macroporous soil - a plot-scale experiment accompanied by high-resolution time-lapse 3D GPR

    NASA Astrophysics Data System (ADS)

    Jackisch, Conrad; Allroggen, Niklas

    2016-04-01

    Infiltration and quick vertical redistribution of event water through rapid subsurface flow in soil structures is one of the key issues in hydrology. Although the importance of preferential flow is broadly recognised, our theories, observation techniques and modelling approaches lose grounds when the assumption of well-mixed states in REVs collapses. To characterise the combination of advective and diffusive flow is especially challenging. We have shown in earlier studies that a combination of TDR monitoring, dye- and salt-tracer recovery and time-lapse 3D GPR in irrigation experiments provides means to characterise infiltration dynamics at the plot- and hillslope-scale also in highly structured soils. We pinpointed that the spatial and temporal resolution requires special attention and improvement - particularly owing to the facts of high velocity (10‑3 ms‑1) of advective flow and small scale (10‑2 m) of the respective flow structures. We present insights from a novel technique of continuous high-resolution time-lapse 3D GPR measurements during and after a plot-scale (1 m x 1 m) irrigation experiment. Continuous TDR soil moisture measurements, dye tracer excavation and salt-tracer samples are used as qualitative and quantitative references. While classical infiltration experiments either look at spatial patterns or temporal dynamics at singular gauges, we highlight the advantage of combining both to achieve a more complete image of the infiltration process. Although operating at the limits of the techniques this setup enables non-invasive observation of preferential flow processes in the field and allows to explore and characterise macropore matrix exchange.

  9. In Vivo Time-Lapse Imaging in the Zebrafish Lateral Line: A Flexible, Open-Ended Research Project for an Undergraduate Neurobiology Laboratory Course

    PubMed Central

    Marra, Molly H.; Tobias, Zachary J.C.; Cohen, Hannah R.; Glover, Greta; Weissman, Tamily A.

    2015-01-01

    The lateral line sensory system in fish detects movements in the water and allows fish to respond to predators, prey, and other stimuli. As the lateral line forms in the first two days of zebrafish development, axons extend caudally along the lateral surface of the fish, eventually forming synapses with hair cells of neuromasts. Growing lateral line axons are located superficially under the skin and can be labeled in living zebrafish using fluorescent protein expression. This system provides a relatively straightforward approach for in vivo time-lapse imaging of neuronal development in an undergraduate setting. Here we describe an upper-level neurobiology laboratory module in which students investigate aspects of axonal development in the zebrafish lateral line system. Students learn to handle and image living fish, collect time-lapse videos of moving mitochondria, and quantitatively measure mitochondrial dynamics by generating and analyzing kymographs of their movements. Energy demands may differ between axons with extending growth cones versus axons that have already reached their targets and are forming synapses. Since relatively little is known about this process in developing lateral line axons, students generate and test their own hypotheses regarding how mitochondrial dynamics may differ at two different time points in axonal development. Students also learn to incorporate into their analysis a powerful yet accessible quantitative tool, the kymograph, which is used to graph movement over time. After students measure and quantify dynamics in living fish at 1 and 2 days post fertilization, this module extends into independent projects, in which students can expand their studies in a number of different, inquiry-driven directions. The project can also be pared down for courses that wish to focus solely on the quantitative analysis (without fish handling), or vice versa. This research module provides a useful approach for the design of open-ended laboratory

  10. Separation of the lapse rate and the cold point tropopauses in the tropics and the resulting impact on cloud top-tropopause relationships

    NASA Astrophysics Data System (ADS)

    Munchak, Leigh A.; Pan, Laura L.

    2014-07-01

    Four years of temperature profiles from Constellation Observing System for Meteorology, Ionosphere, and Climate GPS satellite retrievals are used to examine the difference between the World Meteorological Organization lapse rate definition and the cold point definition of the tropopause in the tropics. The separation between the cold point tropopause (CPT) and lapse rate tropopause (LRT) heights is quantified in seasonal averages and with the frequency of occurrence. In seasonal averages, small separations, <0.5 km, are found in the deep tropics, increasing to ~1 km toward higher latitudes and maximizing at ~1.5 km near the jet streams. The seasonal average separations show significant longitudinal structures in the December-January-February (DJF) and June-July-August (JJA) seasons. Case studies indicate that breaking Rossby waves and their effects extending into the equatorial region are responsible for the longitudinal structure in the DJF season. The seasonal average CPT-LRT separation therefore identifies the regions of the tropical upper troposphere-lower stratosphere that are controlled by extratropical forcing. Examination of individual profiles shows that a small yet significant fraction (~12%) of temperature profiles has CPT-LRT separations of 1 km or larger in the region of small seasonal average separation. These large separations are produced by wave perturbations of the upper tropospheric temperature structure. The impact of tropopause separation on the cloud top-tropopause relationship is examined using colocated CALIPSO cloud top data. We find that the frequency of clouds above the tropopause is reduced by approximately 50% if the CPT is used instead of LRT. The occurrence of clouds above the CPT is nevertheless significant, especially over the western Pacific in the DJF season and over the Asian monsoon region in the JJA season.

  11. Indications of Coupled Carbon and Iron Cycling at a Hydrocarbon-Contaminated Site from Time-Lapse Magnetic Susceptibility (MS) Profiles

    NASA Astrophysics Data System (ADS)

    Lund, A.; Slater, L. D.; Atekwana, E. A.; Rossbach, S.; Ntarlagiannis, D.; Bekins, B. A.

    2015-12-01

    Magnetic susceptibility (MS) data acquired at hydrocarbon contaminated sites have documented enhanced MS within the smear zone (zone of water table fluctuation at hydrocarbon contaminated location) coincident with the free phase (mobile or free liquids moving down through the unsaturated zone independent of the direction of flow of the groundwater or surface water) hydrocarbon plume These studies suggest that magnetic susceptibility can be used as a tool to: (1) infer regions of hydrocarbon contamination, and (2) investigate intrinsic bioremediation by iron reducing bacteria. We performed a campaign of time-lapse MS monitoring at the National Crude Oil Spill Fate and Natural Attenuation Research Site (Bemidji, MN) between July 2011 and August 2015. This highly instrumented site has multiple boreholes installed through the free phase, dissolved phase and uncontaminated portions of the aquifer impacted by an oil spill resulting from a pipeline rupture in 1979. Magnetic susceptibility (MS) data acquired in 2011 showed that MS values in the smear zone are higher than in the dissolved phase plume and background, leading to the hypothesis that MS measurements could be used to monitor the long-term progress of biodegradation at the site. However, repeated MS data acquired in 2014 and 2015 showed strong changes in the character of the MS signal in the smear zone with multiple free phase contamination locations showing a strong suppression of the signal relative to that observed in 2011. Other locations in the dissolved phase of the plume show evidence for vertical migration of the zone of enhanced MS, possibly due to changes in the redox profiles driven by hydrology. Such changes in the MS signal are hypothesized to result from either variations in Fe(II)/Fe(III) ratios in the magnetite or changes in the magnetite concentration associated with coupled carbon and iron biogeochemistry. This work is generating a unique time-lapse geophysical dataset providing information on

  12. Imaging high stage river-water intrusion into a contaminated aquifer along a major river corridor using 2-D time-lapse surface electrical resistivity tomography

    NASA Astrophysics Data System (ADS)

    Wallin, E. L.; Johnson, T. C.; Greenwood, W. J.; Zachara, J. M.

    2013-03-01

    The Hanford 300 Area is located adjacent to the Columbia River in south-central Washington State, USA, and was a former site for nuclear fuel processing operations. Waste disposal practices resulted in persistent unsaturated zone and groundwater contamination, the primary contaminant of concern being uranium. Uranium behavior at the site is intimately linked with river stage driven groundwater-river water exchange such that understanding the nature of river water intrusion into the 300 Area is critical for predicting uranium desorption and transport. In this paper, we use 2-D surface-based time-lapse electrical resistivity tomography (ERT) to image the inland intrusion of river water during high stage conditions. We inverted approximately 1200 data sets (400 per line over three lines) using high performance computing resources to produce a time-lapse sequence of changes in bulk conductivity caused by river water intrusion during the 2011 spring runoff cycle over approximately 125 days. To invert the data, we use an image differencing approach that does not require regularization in the time dimension, enabling the inversion to accommodate the sharp, time varying contrasts in conductivity imposed by the moving water table. The resulting time series for each mesh element was then analyzed using common time series analysis to reveal the timing and location of river water intrusion beneath each line. The results reveal nonuniform flows characterized by preferred flow zones where river water enters and exits quickly with stage increase and decrease, and low permeability zones with broader bulk conductivity "break through" curves and longer river water residence times.

  13. An efficient method of 3-D elastic full waveform inversion using a finite-difference injection method for time-lapse imaging

    NASA Astrophysics Data System (ADS)

    Borisov, Dmitry; Singh, Satish C.; Fuji, Nobuaki

    2015-09-01

    Seismic full waveform inversion is an objective method to estimate elastic properties of the subsurface and is an important area of research, particularly in seismic exploration community. It is a data-fitting approach, where the difference between observed and synthetic data is minimized iteratively. Due to a very high computational cost, the practical implementation of waveform inversion has so far been restricted to a 2-D geometry with different levels of physics incorporated in it (e.g. elasticity/viscoelasticity) or to a 3-D geometry but using an acoustic approximation. However, the earth is three-dimensional, elastic and heterogeneous and therefore a full 3-D elastic inversion is required in order to obtain more accurate and valuable models of the subsurface. Despite the recent increase in computing power, the application of 3-D elastic full waveform inversion to real-scale problems remains quite challenging on the current computer architecture. Here, we present an efficient method to perform 3-D elastic full waveform inversion for time-lapse seismic data using a finite-difference injection method. In this method, the wavefield is computed in the whole model and is stored on a surface above a finite volume where the model is perturbed and localized inversion is performed. Comparison of the final results using the 3-D finite-difference injection method and conventional 3-D inversion performed within the whole volume shows that our new method provides significant reductions in computational time and memory requirements without any notable loss in accuracy. Our approach shows a big potential for efficient reservoir monitoring in real time-lapse experiments.

  14. In Vivo Time-Lapse Imaging in the Zebrafish Lateral Line: A Flexible, Open-Ended Research Project for an Undergraduate Neurobiology Laboratory Course.

    PubMed

    Marra, Molly H; Tobias, Zachary J C; Cohen, Hannah R; Glover, Greta; Weissman, Tamily A

    2015-01-01

    The lateral line sensory system in fish detects movements in the water and allows fish to respond to predators, prey, and other stimuli. As the lateral line forms in the first two days of zebrafish development, axons extend caudally along the lateral surface of the fish, eventually forming synapses with hair cells of neuromasts. Growing lateral line axons are located superficially under the skin and can be labeled in living zebrafish using fluorescent protein expression. This system provides a relatively straightforward approach for in vivo time-lapse imaging of neuronal development in an undergraduate setting. Here we describe an upper-level neurobiology laboratory module in which students investigate aspects of axonal development in the zebrafish lateral line system. Students learn to handle and image living fish, collect time-lapse videos of moving mitochondria, and quantitatively measure mitochondrial dynamics by generating and analyzing kymographs of their movements. Energy demands may differ between axons with extending growth cones versus axons that have already reached their targets and are forming synapses. Since relatively little is known about this process in developing lateral line axons, students generate and test their own hypotheses regarding how mitochondrial dynamics may differ at two different time points in axonal development. Students also learn to incorporate into their analysis a powerful yet accessible quantitative tool, the kymograph, which is used to graph movement over time. After students measure and quantify dynamics in living fish at 1 and 2 days post fertilization, this module extends into independent projects, in which students can expand their studies in a number of different, inquiry-driven directions. The project can also be pared down for courses that wish to focus solely on the quantitative analysis (without fish handling), or vice versa. This research module provides a useful approach for the design of open-ended laboratory

  15. Automatic detection and analysis of cell motility in phase-contrast time-lapse images using a combination of maximally stable extremal regions and Kalman filter approaches.

    PubMed

    Kaakinen, M; Huttunen, S; Paavolainen, L; Marjomäki, V; Heikkilä, J; Eklund, L

    2014-01-01

    Phase-contrast illumination is simple and most commonly used microscopic method to observe nonstained living cells. Automatic cell segmentation and motion analysis provide tools to analyze single cell motility in large cell populations. However, the challenge is to find a sophisticated method that is sufficiently accurate to generate reliable results, robust to function under the wide range of illumination conditions encountered in phase-contrast microscopy, and also computationally light for efficient analysis of large number of cells and image frames. To develop better automatic tools for analysis of low magnification phase-contrast images in time-lapse cell migration movies, we investigated the performance of cell segmentation method that is based on the intrinsic properties of maximally stable extremal regions (MSER). MSER was found to be reliable and effective in a wide range of experimental conditions. When compared to the commonly used segmentation approaches, MSER required negligible preoptimization steps thus dramatically reducing the computation time. To analyze cell migration characteristics in time-lapse movies, the MSER-based automatic cell detection was accompanied by a Kalman filter multiobject tracker that efficiently tracked individual cells even in confluent cell populations. This allowed quantitative cell motion analysis resulting in accurate measurements of the migration magnitude and direction of individual cells, as well as characteristics of collective migration of cell groups. Our results demonstrate that MSER accompanied by temporal data association is a powerful tool for accurate and reliable analysis of the dynamic behaviour of cells in phase-contrast image sequences. These techniques tolerate varying and nonoptimal imaging conditions and due to their relatively light computational requirements they should help to resolve problems in computationally demanding and often time-consuming large-scale dynamical analysis of cultured cells.

  16. Insights and questions raised from a multi-tracer plot-scale sprinkler experiment with time-lapse 3D GPR in a structured forested soil.

    NASA Astrophysics Data System (ADS)

    Jackisch, Conrad; Sprenger, Matthias; Allroggen, Niklas; van Schaik, Loes; Weiler, Markus; Zehe, Erwin

    2014-05-01

    Stable isotopes appear as ideal tracer commonly applied in preferential flow analyses. At the same time, central assumptions about signature mixing and propagation are founded on effective parameters merging advective and diffusive flow domains. However, in structured soils conditions are often far from well-mixed and some established assumptions may need to be reconsidered. We conducted a multi-tracer sprinkler experiment at a forested hillslope in the Attert Basin in Luxembourg with prevailing geogenic and biogenic preferential flow structures. At plot scale of 1x1 m2 we sprinkled two plots with 50 mm and one plot with 30 mm Brilliant Blue and Bromide enriched water for 1 hour. The experiments were accompanied by a high resolution 3D time-lapse GPR (Ground-Penetrating Radar) survey scanning 3x3 m2 before, directly after sprinkling and before excavation one day after sprinkling. Soil moisture was monitored with a TDR tube probe. Soil profiles were excavated and recorded for dye flow paths and for one medium resolution Bromide profile. In addition one core for pore water stable isotope analysis was taken before the sprinkling as reference and at each plot after sprinkling. We present the results with focus on the found evidence of preferential flow and the signals of the different tracers - especially the stable isotopes. While all other methods clearly show that only minor proportions of the soil took part in the infiltration process and that the sprinkler water has largely advectively propagated to the saprolite layer at about 80-100 cm depth, the stable isotopes signals from the cores indicate more intense interaction between the soil matrix and macropores, especially in the top 50 cm. This leads to the question of how the isotope signal could mix well, when most of the pore-water did not directly interact with the infiltration-water. Further questions arise to the use of tracers in general, due to the known limitations of excavation itself and rather coarse

  17. Combining time-lapse electrical resistivity, suction cup and tensiometer measurements to monitor snowmelt and solute transport at Oslo airport, Gardermoen

    NASA Astrophysics Data System (ADS)

    Bloem, Esther; French, Helen K.

    2013-04-01

    Geophysical methods provide indirect measurements of subsurface properties over larger volumes than traditional techniques, and are potentially cost-efficient. However, the usefulness of any individual set of geophysical measurements (akin to a snapshot at one point in time) is severely limited by the problem of non-uniqueness or ambiguity when used to study contaminated sites, where the attendant processes vary in space and time. To make progress on soil contamination assessment and site characterization there is a strong need to integrate quasi field-scale, extensively instrumented tools, with non-invasive (geophysical) methods. The impact of annual infiltration of large quantities of de-icing chemicals at Oslo airport, Gardermoen, represents common challenge for all airports with winter frost. It is also similar to the challenge posed by de-icing salt application along roads. To improve risk assessment, monitoring, and treatment strategies for natural attenuation, we require a better understanding on the resistivity effects from infiltrating snowmelt and contaminant movement to the methods suitable for monitoring resistivity changes over time at contaminated sites. Electrical and electromagnetic methods are widely applied for soil mapping and detecting of contaminated plumes. Time-lapse measurements have become a common method to characterize changes in water saturation and solute transport in the unsaturated zone (French and Binley, 2004; French et al. 2002). The non-uniqueness of the interpretation techniques can be reduced by constraining the inversion through the addition of independent measurements along the same profile. Such measurements include soil physical properties, soil suction, contaminant concentration and temperatures. At the research field station at Gardermoen, a degradable de-icing chemical and an inactive tracer were added to the snow cover prior to snowmelt. In order to link geophysical measurements to solute transport processes in the

  18. Activity patterns of mobile epibenthic megafauna at an abyssal site in the eastern North Pacific: results from a 17-month time-lapse photographic study

    NASA Astrophysics Data System (ADS)

    Kaufmann, R. S.; Smith, K. L.

    1997-04-01

    Mobile epibenthic megafauna are important components of many deep-sea communities, yet direct observations of their activities and estimates of their potential impact on benthic processes are scarce. To address this deficiency we deployed a time-lapse camera system at an abyssal site in the eastern North Pacific (Sta. M; 34°50'N, 123°00'W; 4100 m depth) to monitor epibenthic megafaunal movements over the 17-month period from February 1990 through July 1991. Photographs, each covering approximately 20 m 2, were taken every hour during this time span, except for the period from late October 1990 through mid-February 1991, when photos were taken every 4 h. Movements of the seven numerically dominant species of mobile epibenthic megafauna were digitized and analyzed for spatial patterns and temporal variation. These movements were markedly non-random for all seven species, with movement patterns falling into three broad categories: run-and-mill, loop and run. The holothuroid Peniagone vitrea displayed looping behavior that in some cases ( n = 8) had a distinct, semi-diurnal component possibly attributable to the influence of external factors such as tidal currents. P. vitrea was also the only species of the seven observed to swim. Temporal variations in movement patterns were also observed, with individuals of the two most abundant species, Elpidia minutissima and P. vitrea, spending less time within the camera's field of view during periods when potential food items, in the form of pelagically-derived detrital aggregates, were visible on the sea floor compared to periods when aggregates were absent. Based on abundances, body sizes and movement patterns, the three most abundant species, E. minutissima, P. vitrea and Abyssocucumis abyssorum, traversed 76.5% of the total area of sea floor covered by all seven species between February 1990 and July 1991. Of the seven species we studied, only two, A. abyssorum and Echinocrepis sp., left distinct traces on the sea floor

  19. A Functional Genomic Screen Combined with Time-Lapse Microscopy Uncovers a Novel Set of Genes Involved in Dorsal Closure of Drosophila Embryos

    PubMed Central

    Jankovics, Ferenc; Henn, László; Bujna, Ágnes; Vilmos, Péter; Kiss, Nóra; Erdélyi, Miklós

    2011-01-01

    Morphogenesis, the establishment of the animal body, requires the coordinated rearrangement of cells and tissues regulated by a very strictly-determined genetic program. Dorsal closure of the epithelium in the Drosophila melanogaster embryo is one of the best models for such a complex morphogenetic event. To explore the genetic regulation of dorsal closure, we carried out a large-scale RNA interference-based screen in combination with in vivo time-lapse microscopy and identified several genes essential for the closure or affecting its dynamics. One of the novel dorsal closure genes, the small GTPase activator pebble (pbl), was selected for detailed analysis. We show that pbl regulates actin accumulation and protrusion dynamics in the leading edge of the migrating epithelial cells. In addition, pbl affects dorsal closure dynamics by regulating head involution, a morphogenetic process mechanically coupled with dorsal closure. Finally, we provide evidence that pbl is involved in closure of the adult thorax, suggesting its general requirement in epithelial closure processes. PMID:21799798

  20. Time-lapse analysis of methane quantity in Mary Lee group of coal seams using filter-based multiple-point geostatistical simulation

    USGS Publications Warehouse

    Karacan, C. Özgen; Olea, Ricardo A.

    2013-01-01

    The systematic approach presented in this paper is the first time in literature that history matching, TIs of GIPs and filter simulations are used for degasification performance evaluation and for assessing GIP for mining safety. Results from this study showed that using production history matching of coalbed methane wells to determine time-lapsed reservoir data could be used to compute spatial GIP and representative GIP TIs generated through Voronoi decomposition. Furthermore, performing filter simulations using point-wise data and TIs could be used to predict methane quantity in coal seams subjected to degasification. During the course of the study, it was shown that the material balance of gas produced by wellbores and the GIP reductions in coal seams predicted using filter simulations compared very well, showing the success of filter simulations for continuous variables in this case study. Quantitative results from filter simulations of GIP within the studied area briefly showed that GIP was reduced from an initial ∼73 Bcf (median) to ∼46 Bcf (2011), representing a 37 % decrease and varying spatially through degasification. It is forecasted that there will be an additional ∼2 Bcf reduction in methane quantity between 2011 and 2015. This study and presented results showed that the applied methodology and utilized techniques can be used to map GIP and its change within coal seams after degasification, which can further be used for ventilation design for methane control in coal mines.

  1. Live Cells as Dynamic Laboratories: Time Lapse Raman Spectral Microscopy of Nanoparticles with Both IgE Targeting and pH-Sensing Functions

    DOE PAGES

    Nowak-Lovato, Kristy L.; Rector, Kirk D.

    2012-01-01

    Tmore » his review captures the use of live cells as dynamic microlaboratories through implementation of labeled nanoparticles (nanosensors) that have both sensing and targeting functions.he addition of 2,4-ε-dinitrophenol-L-lysine (DNP) as a FcεRI targeting ligand and 4-mercaptopyridine (4-MPy) as a pH-sensing ligand enables spatial and temporal monitoring of FcεRI receptors and their pH environment within the endocytic pathway.o ensure reliability, the sensor is calibrated in vivo using the ionophore nigericin and standard buffer solutions to equilibrate the external [ H + ] concentration with that of the cell compartments.his review highlights the nanosensors, ability to traffic and respond to pH of receptor-bound nanosensors (1) at physiological temperature ( 37 ° C ) versus room temperature ( 25 ° C ) , (2) after pharmacological treatment with bafilomycin, an H + ATPase pump inhibitor, or amiloride, an inhibitor of Na + / H + exchange, and (3) in response to both temperature and pharmacological treatment. Whole-cell, time lapse images are demonstrated to show the ability to transform live cells into dynamic laboratories to monitor temporal and spatial endosomal pH.he versatility of these probes shows promise for future applications relevant to intracellular trafficking and intelligent drug design.« less

  2. Live Cells as Dynamic Laboratories: Time Lapse Raman Spectral Microscopy of Nanoparticles with Both IgE Targeting and pH-Sensing Functions

    PubMed Central

    Nowak-Lovato, Kristy L.; Rector, Kirk D.

    2012-01-01

    This review captures the use of live cells as dynamic microlaboratories through implementation of labeled nanoparticles (nanosensors) that have both sensing and targeting functions. The addition of 2,4-ε-dinitrophenol-L-lysine (DNP) as a FcεRI targeting ligand and 4-mercaptopyridine (4-MPy) as a pH-sensing ligand enables spatial and temporal monitoring of FcεRI receptors and their pH environment within the endocytic pathway. To ensure reliability, the sensor is calibrated in vivo using the ionophore nigericin and standard buffer solutions to equilibrate the external [H+] concentration with that of the cell compartments. This review highlights the nanosensors, ability to traffic and respond to pH of receptor-bound nanosensors (1) at physiological temperature (37°C) versus room temperature (25°C), (2) after pharmacological treatment with bafilomycin, an H+ ATPase pump inhibitor, or amiloride, an inhibitor of Na+/H+ exchange, and (3) in response to both temperature and pharmacological treatment. Whole-cell, time lapse images are demonstrated to show the ability to transform live cells into dynamic laboratories to monitor temporal and spatial endosomal pH. The versatility of these probes shows promise for future applications relevant to intracellular trafficking and intelligent drug design. PMID:22778738

  3. Serotonergic neurotransmission and lapses of attention in children and adolescents with attention deficit hyperactivity disorder: availability of tryptophan influences attentional performance.

    PubMed

    Zepf, Florian D; Gaber, Tilman J; Baurmann, David; Bubenzer, Sarah; Konrad, Kerstin; Herpertz-Dahlmann, Beate; Stadler, Christina; Poustka, Fritz; Wöckel, Lars

    2010-08-01

    Deficiencies in serotonergic (5-HT) neurotransmission have frequently been linked to altered attention and memory processes. With attention deficit hyperactivity disorder (ADHD) being associated with impaired attention and working memory, this study investigated the effects of a diminished 5-HT turnover achieved by rapid tryptophan depletion (RTD) on attentional performance in children and adolescents with ADHD. Twenty-two male patients with ADHD (aged 9-15 yr) received the RTD procedure Moja-De and a tryptophan (Trp)-balanced placebo (Pla) in a randomized, double-blind, within-subject crossover design on two separate study days. Lapses of attention (LA) and phasic alertness (PA) were assessed within the test battery for attentional performance under depleted and sham-depleted conditions 120 (T1), 220 (T2) and 300 (T3) min after intake of RTD/Pla. At T1 there was a significant main effect for RTD, indicating more LA under intake of a Trp-balanced Pla compared to diminished 5-HT neurotransmission. For T2/T3 there were no such effects. PA was not affected by the factors RTD/Pla and time. Interactions of 5-HT with other neurotransmitters as possible underlying neurochemical processes could be subject to further investigations involving healthy controls as regards altered attentional performance in children and adolescents.

  4. Multi-Target Tracking With Time-Varying Clutter Rate and Detection Profile: Application to Time-Lapse Cell Microscopy Sequences.

    PubMed

    Rezatofighi, Seyed Hamid; Gould, Stephen; Vo, Ba Tuong; Vo, Ba-Ngu; Mele, Katarina; Hartley, Richard

    2015-06-01

    Quantitative analysis of the dynamics of tiny cellular and sub-cellular structures, known as particles, in time-lapse cell microscopy sequences requires the development of a reliable multi-target tracking method capable of tracking numerous similar targets in the presence of high levels of noise, high target density, complex motion patterns and intricate interactions. In this paper, we propose a framework for tracking these structures based on the random finite set Bayesian filtering framework. We focus on challenging biological applications where image characteristics such as noise and background intensity change during the acquisition process. Under these conditions, detection methods usually fail to detect all particles and are often followed by missed detections and many spurious measurements with unknown and time-varying rates. To deal with this, we propose a bootstrap filter composed of an estimator and a tracker. The estimator adaptively estimates the required meta parameters for the tracker such as clutter rate and the detection probability of the targets, while the tracker estimates the state of the targets. Our results show that the proposed approach can outperform state-of-the-art particle trackers on both synthetic and real data in this regime. PMID:25594963

  5. 4D analysis of the microstructural evolution of Si-based electrodes during lithiation: Time-lapse X-ray imaging and digital volume correlation

    NASA Astrophysics Data System (ADS)

    Paz-Garcia, J. M.; Taiwo, O. O.; Tudisco, E.; Finegan, D. P.; Shearing, P. R.; Brett, D. J. L.; Hall, S. A.

    2016-07-01

    Silicon is a promising candidate to substitute or complement graphite as anode material in Li-ion batteries due, mainly, to its high energy density. However, the lithiation/delithiation processes of silicon particles are inherently related to drastic volume changes which, within a battery's physically constrained case, can induce significant deformation of the fundamental components of the battery that can eventually cause it to fail. In this work, we use non-destructive time-lapse X-ray imaging techniques to study the coupled electrochemo-mechanical phenomena in Li-ion batteries. We present X-ray computed tomography data acquired at different times during the first lithiation of custom-built silicon-lithium battery cells. Microstructural volume changes have been quantified using full 3D strain field measurements from digital volume correlation analysis. Furthermore, the extent of lithiation of silicon particles has been quantified in 3D from the grey-scale of the tomography images. Correlation of the volume expansion and grey-scale changes over the silicon-based electrode volume indicates that the process of lithiation is kinetically affected by the reaction at the Si/LixSi interface.

  6. Time-lapse camera observations of gas piston activity at Pu‘u ‘Ō‘ō, Kīlauea volcano, Hawai‘i

    USGS Publications Warehouse

    Orr, Tim R.; Rea, James

    2012-01-01

    Gas pistoning is a type of eruptive behavior described first at Kīlauea volcano and characterized by the (commonly) cyclic rise and fall of the lava surface within a volcanic vent or lava lake. Though recognized for decades, its cause continues to be debated, and determining why and when it occurs has important implications for understanding vesiculation and outgassing processes at basaltic volcanoes. Here, we describe gas piston activity that occurred at the Pu‘u ‘Ō‘ō cone, in Kīlauea’s east rift zone, during June 2006. Direct, detailed measurements of lava level, made from time-lapse camera images captured at close range, show that the gas pistons during the study period lasted from 2 to 60 min, had volumes ranging from 14 to 104 m3, displayed a slowing rise rate of the lava surface, and had an average gas release duration of 49 s. Our data are inconsistent with gas pistoning models that invoke gas slug rise or a dynamic pressure balance but are compatible with models which appeal to gas accumulation and loss near the top of the lava column, possibly through the generation and collapse of a foam layer.

  7. Multi-Target Tracking With Time-Varying Clutter Rate and Detection Profile: Application to Time-Lapse Cell Microscopy Sequences.

    PubMed

    Rezatofighi, Seyed Hamid; Gould, Stephen; Vo, Ba Tuong; Vo, Ba-Ngu; Mele, Katarina; Hartley, Richard

    2015-06-01

    Quantitative analysis of the dynamics of tiny cellular and sub-cellular structures, known as particles, in time-lapse cell microscopy sequences requires the development of a reliable multi-target tracking method capable of tracking numerous similar targets in the presence of high levels of noise, high target density, complex motion patterns and intricate interactions. In this paper, we propose a framework for tracking these structures based on the random finite set Bayesian filtering framework. We focus on challenging biological applications where image characteristics such as noise and background intensity change during the acquisition process. Under these conditions, detection methods usually fail to detect all particles and are often followed by missed detections and many spurious measurements with unknown and time-varying rates. To deal with this, we propose a bootstrap filter composed of an estimator and a tracker. The estimator adaptively estimates the required meta parameters for the tracker such as clutter rate and the detection probability of the targets, while the tracker estimates the state of the targets. Our results show that the proposed approach can outperform state-of-the-art particle trackers on both synthetic and real data in this regime.

  8. CellDyM: A room temperature operating cryogenic cell for the dynamic monitoring of snow metamorphism by time-lapse X-ray microtomography

    NASA Astrophysics Data System (ADS)

    Calonne, N.; Flin, F.; Lesaffre, B.; Dufour, A.; Roulle, J.; Puglièse, P.; Philip, A.; Lahoucine, F.; Geindreau, C.; Panel, J.-M.; Roscoat, S. Rolland; Charrier, P.

    2015-05-01

    Monitoring the time evolution of snow microstructure in 3-D is crucial for a better understanding of snow metamorphism. We, therefore, designed a cryogenic cell that precisely controls the experimental conditions of a sample while it is scanned by X-ray tomography. Based on a thermoelectrical regulation and a vacuum insulation, the cell operates at room temperature. It is, thus, adaptable to diverse scanners, offering advantages in terms of imaging techniques, resolution, and speed. Three-dimensional time-lapse series were obtained under equitemperature and temperature gradient conditions at a 7.8 μm precision. The typical features of each metamorphism and the anisotropic faceting behavior between the basal and prismatic planes, known to occur close to -2°C, were observed in less than 30 h. These results are consistent with the temperature fields expected from heat conduction simulations through the cell. They confirm the cell's accuracy and the interest of relatively short periods to study snow metamorphism.

  9. Understanding leachate flow in municipal solid waste landfills by combining time-lapse ERT and subsurface flow modelling - Part II: Constraint methodology of hydrodynamic models.

    PubMed

    Audebert, M; Oxarango, L; Duquennoi, C; Touze-Foltz, N; Forquet, N; Clément, R

    2016-09-01

    Leachate recirculation is a key process in the operation of municipal solid waste landfills as bioreactors. To ensure optimal water content distribution, bioreactor operators need tools to design leachate injection systems. Prediction of leachate flow by subsurface flow modelling could provide useful information for the design of such systems. However, hydrodynamic models require additional data to constrain them and to assess hydrodynamic parameters. Electrical resistivity tomography (ERT) is a suitable method to study leachate infiltration at the landfill scale. It can provide spatially distributed information which is useful for constraining hydrodynamic models. However, this geophysical method does not allow ERT users to directly measure water content in waste. The MICS (multiple inversions and clustering strategy) methodology was proposed to delineate the infiltration area precisely during time-lapse ERT survey in order to avoid the use of empirical petrophysical relationships, which are not adapted to a heterogeneous medium such as waste. The infiltration shapes and hydrodynamic information extracted with MICS were used to constrain hydrodynamic models in assessing parameters. The constraint methodology developed in this paper was tested on two hydrodynamic models: an equilibrium model where, flow within the waste medium is estimated using a single continuum approach and a non-equilibrium model where flow is estimated using a dual continuum approach. The latter represents leachate flows into fractures. Finally, this methodology provides insight to identify the advantages and limitations of hydrodynamic models. Furthermore, we suggest an explanation for the large volume detected by MICS when a small volume of leachate is injected. PMID:27095292

  10. Time-lapse ultrashort pulse microscopy of infection in three-dimensional versus two-dimensional culture environments reveals enhanced extra-chromosomal virus replication compartment formation

    NASA Astrophysics Data System (ADS)

    Gibbs, Holly C.; Sing, Garwin; Armas, Juan Carlos González; Campbell, Colin J.; Ghazal, Peter; Yeh, Alvin T.

    2013-03-01

    The mechanisms that enable viruses to harness cellular machinery for their own survival are primarily studied in cell lines cultured in two-dimensional (2-D) environments. However, there are increasing reports of biological differences between cells cultured in 2-D versus three-dimensional (3-D) environments. Here we report differences in host-virus interactions based on differences in culture environment. Using ultrashort pulse microscopy (UPM), a form of two-photon microscopy that utilizes sub-10-fs pulses to efficiently excite fluorophores, we have shown that de novo development of extra-chromosomal virus replication compartments (VRCs) upon murine cytomegalovirus (mCMV) infection is markedly enhanced when host cells are cultured in 3-D collagen gels versus 2-D monolayers. In addition, time-lapse imaging revealed that mCMV-induced VRCs have the capacity to grow by coalescence. This work supports the future potential of 3-D culture as a useful bridge between traditional monolayer cultures and animal models to study host-virus interactions in a more physiologically relevant environment for the development of effective anti-viral therapeutics. These advances will require broader adoption of modalities, such as UPM, to image deep within scattering tissues.

  11. New Algorithm to Determine True Colocalization in Combination with Image Restoration and Time-Lapse Confocal Microscopy to Map Kinases in Mitochondria

    PubMed Central

    Iacaruso, María Florencia; Antico Arciuch, Valeria Gabriela; Poderoso, Juan José; Jares-Erijman, Elizabeth Andrea; Pietrasanta, Lía Isabel

    2011-01-01

    The subcellular localization and physiological functions of biomolecules are closely related and thus it is crucial to precisely determine the distribution of different molecules inside the intracellular structures. This is frequently accomplished by fluorescence microscopy with well-characterized markers and posterior evaluation of the signal colocalization. Rigorous study of colocalization requires statistical analysis of the data, albeit yet no single technique has been established as a standard method. Indeed, the few methods currently available are only accurate in images with particular characteristics. Here, we introduce a new algorithm to automatically obtain the true colocalization between images that is suitable for a wide variety of biological situations. To proceed, the algorithm contemplates the individual contribution of each pixel's fluorescence intensity in a pair of images to the overall Pearsońs correlation and Manders' overlap coefficients. The accuracy and reliability of the algorithm was validated on both simulated and real images that reflected the characteristics of a range of biological samples. We used this algorithm in combination with image restoration by deconvolution and time-lapse confocal microscopy to address the localization of MEK1 in the mitochondria of different cell lines. Appraising the previously described behavior of Akt1 corroborated the reliability of the combined use of these techniques. Together, the present work provides a novel statistical approach to accurately and reliably determine the colocalization in a variety of biological images. PMID:21559502

  12. Neural crest cell behavior in white and dark larvae of Ambystoma mexicanum: time-lapse cinemicrographic analysis of pigment cell movement in vivo and in culture.

    PubMed

    Keller, R E; Spieth, J

    1984-01-01

    The pattern of migration and motile activity of developing pigment cells of the Mexican axolotl, Ambystoma mexicanum, were analyzed by time-lapse cinemicrography in vivo and in culture. In vivo, melanocytes of dark (D/-) larvae migrate from dorsal to ventral in a highly directional manner. They are elongated and aligned parallel to the direction of migration. Nearly all protrusive activity occurs at their ventral, leading edges. Translocation occurs at a mean rate of 0.7 micron/min and involves alternate or simultaneous advance of the leading and trailing edges of the cell. Indirect evidence suggests that cytoplasmic flow is common. Directional migration occurs in apparent absence of contact between melanocytes. In white (d/d) larvae, protrusive activity is infrequent and the melanocytes move slowly or not at all. Explanted neural crest cells of dark and white larvae attach, spread, and differentiate into melanophores and xanthophores in culture. Individual cultured cells are unbiased in direction of protrusive activity and path of migration. Centrifugal spreading occurs by contacting inhibition of movement. Distribution of protrusive activity, polarity, and contact behavior changes with developmental age in vivo and in culture in ways that may be important in establishing the pigment pattern. PMID:6699589

  13. Gigavision - A weatherproof, multibillion pixel resolution time-lapse camera system for recording and tracking phenology in every plant in a landscape

    NASA Astrophysics Data System (ADS)

    Brown, T.; Borevitz, J. O.; Zimmermann, C.

    2010-12-01

    retrieved at bi-weekly intervals. Our longer-term goal is to make gigapixel time-lapse datasets available online in an interactive interface that layers plant-level phenology data with gigapixel resolution images, genomic sequence data from individual plants with weather and other abitotic sensor data. Co-visualization of all of these data types provides researchers with a powerful new tool for examining complex ecological interactions across scales from the individual to the ecosystem. We will present detailed phenostage data from more than 100 plants of multiple species from our Gigavision timelapse camera at our “Big Blowout East” field site in the Indiana Dunes State Park, IN. This camera has been recording three to four 700 million pixel images a day since February 28, 2010. The camera field of view covers an area of about 7 hectares resulting in an average image resolution of about 1 pixel per centimeter over the entire site. We will also discuss some of the many technological challenges with developing and maintaining these types of hardware systems, collecting quantitative data from gigapixel resolution time-lapse data and effectively managing terabyte-sized datasets of millions of images.

  14. Remotely Measuring Trash Fluxes in the Flood Canals of Megacities with Time Lapse Cameras and Computer Vision Algorithms - a Case Study from Jakarta, Indonesia.

    NASA Astrophysics Data System (ADS)

    Sedlar, F.; Turpin, E.; Kerkez, B.

    2014-12-01

    As megacities around the world continue to develop at breakneck speeds, future development, investment, and social wellbeing are threatened by a number of environmental and social factors. Chief among these is frequent, persistent, and unpredictable urban flooding. Jakarta, Indonesia with a population of 28 million, is a prime example of a city plagued by such flooding. Yet although Jakarta has ample hydraulic infrastructure already in place with more being constructed, the increasingly severity of the flooding it experiences is not from a lack of hydraulic infrastructure but rather a failure of existing infrastructure. As was demonstrated during the most recent floods in Jakarta, the infrastructure failure is often the result of excessive amounts of trash in the flood canals. This trash clogs pumps and reduces the overall system capacity. Despite this critical weakness of flood control in Jakarta, no data exists on the overall amount of trash in the flood canals, much less on how it varies temporally and spatially. The recent availability of low cost photography provides a means to obtain such data. Time lapse photography postprocessed with computer vision algorithms yields a low cost, remote, and automatic solution to measuring the trash fluxes. When combined with the measurement of key hydrological parameters, a thorough understanding of the relationship between trash fluxes and the hydrology of massive urban areas becomes possible. This work examines algorithm development, quantifying trash parameters, and hydrological measurements followed by data assimilation into existing hydraulic and hydrological models of Jakarta. The insights afforded from such an approach allows for more efficient operating of hydraulic infrastructure, knowledge of when and where critical levels of trash originate from, and the opportunity for community outreach - which is ultimately needed to reduce the trash in the flood canals of Jakarta and megacities around the world.

  15. Analysis and trends of precipitation lapse rate and extreme indices over north Sikkim eastern Himalayas under CMIP5ESM-2M RCPs experiments

    NASA Astrophysics Data System (ADS)

    Singh, Vishal; Goyal, Manish Kumar

    2016-01-01

    This paper draws attention to highlight the spatial and temporal variability in precipitation lapse rate (PLR) and precipitation extreme indices (PEIs) through the mesoscale characterization of Teesta river catchment, which corresponds to north Sikkim eastern Himalayas. A PLR rate is an important variable for the snowmelt runoff models. In a mountainous region, the PLR could be varied from lower elevation parts to high elevation parts. In this study, a PLR was computed by accounting elevation differences, which varies from around 1500 m to 7000 m. A precipitation variability and extremity were analysed using multiple mathematical functions viz. quantile regression, spatial mean, spatial standard deviation, Mann-Kendall test and Sen's estimation. For this reason, a daily precipitation, in the historical (years 1980-2005) as measured/observed gridded points and projected experiments for the 21st century (years 2006-2100) simulated by CMIP5 ESM-2 M model (Coupled Model Intercomparison Project Phase 5 Earth System Model 2) employing three different radiative forcing scenarios (Representative Concentration Pathways), utilized for the research work. The outcomes of this study suggest that a PLR is significantly varied from lower elevation to high elevation parts. The PEI based analysis showed that the extreme high intensity events have been increased significantly, especially after 2040s. The PEI based observations also showed that the numbers of wet days are increased for all the RCPs. The quantile regression plots showed significant increments in the upper and lower quantiles of the various extreme indices. The Mann-Kendall test and Sen's estimation tests clearly indicated significant changing patterns in the frequency and intensity of the precipitation indices across all the sub-basins and RCP scenario in an intra-decadal time series domain. The RCP8.5 showed extremity of the projected outcomes.

  16. Diffusion of solutes inside bacterial colonies immobilized in model cheese depends on their physicochemical properties: a time-lapse microscopy study

    PubMed Central

    Floury, Juliane; El Mourdi, Ilham; Silva, Juliana V. C.; Lortal, Sylvie; Thierry, Anne; Jeanson, Sophie

    2015-01-01

    During cheese processing and ripening, bacteria develop as colonies. Substrates and metabolites must then diffuse either from or into the colonies. Exploring how the inner cells of the colony access the substrates or get rid of the products leads to study the diffusion of solutes inside bacterial colonies immobilized in cheese. Diffusion limitations of substrates within the bacterial colony could lead to starvation for the cells in the center of the colony. This study aimed at better understands ripening at the colony level, by investigating how diffusion phenomena inside colonies vary depending on both the physicochemical properties of the solutes and Lactococcus lactis strain. Dextrans (4, 70, and 155 kDa) and milk proteins (BSA, lactoferrin and αS1-casein) of different sizes and physicochemical properties were chosen as model of diffusing solutes, and two L. lactis strains presenting different surface properties were immobilized as colonies in a model cheese. Diffusion of solutes inside and around colonies was experimentally followed by time-lapse confocal microscopy. Dextran solutes diffused inside both lactococci colonies with a non-significantly different effective diffusion coefficient, which depended mainly on size of the solute. However, whereas flexible and neutral hydrophilic polymers such as dextran can diffuse inside colonies whatever its size, none of the three proteins investigated in this study could penetrate inside lactococci colonies. Therefore, the diffusion behavior of macromolecules through bacterial colonies immobilized in a model cheese did not only depends on the size of the diffusing solutes, but also and mainly on their physicochemical properties. Milk caseins are probably first hydrolyzed by the cell wall proteases of L. lactis and/or other proteases present in the cheese, and then the generated peptides diffuse inside colonies to be further metabolized into smaller peptides and amino acids by all the cells located inside the colonies

  17. 4-D imaging of seepage in earthen embankments with time-lapse inversion of self-potential data constrained by acoustic emissions localization

    NASA Astrophysics Data System (ADS)

    Rittgers, J. B.; Revil, A.; Planes, T.; Mooney, M. A.; Koelewijn, A. R.

    2015-02-01

    New methods are required to combine the information contained in the passive electrical and seismic signals to detect, localize and monitor hydromechanical disturbances in porous media. We propose a field experiment showing how passive seismic and electrical data can be combined together to detect a preferential flow path associated with internal erosion in a Earth dam. Continuous passive seismic and electrical (self-potential) monitoring data were recorded during a 7-d full-scale levee (earthen embankment) failure test, conducted in Booneschans, Netherlands in 2012. Spatially coherent acoustic emissions events and the development of a self-potential anomaly, associated with induced concentrated seepage and internal erosion phenomena, were identified and imaged near the downstream toe of the embankment, in an area that subsequently developed a series of concentrated water flows and sand boils, and where liquefaction of the embankment toe eventually developed. We present a new 4-D grid-search algorithm for acoustic emissions localization in both time and space, and the application of the localization results to add spatially varying constraints to time-lapse 3-D modelling of self-potential data in the terms of source current localization. Seismic signal localization results are utilized to build a set of time-invariant yet spatially varying model weights used for the inversion of the self-potential data. Results from the combination of these two passive techniques show results that are more consistent in terms of focused ground water flow with respect to visual observation on the embankment. This approach to geophysical monitoring of earthen embankments provides an improved approach for early detection and imaging of the development of embankment defects associated with concentrated seepage and internal erosion phenomena. The same approach can be used to detect various types of hydromechanical disturbances at larger scales.

  18. Time lapse seismic response (4D) related to industrial-scale CO2 injection at an EOR and CCS site, Cranfield, MS

    NASA Astrophysics Data System (ADS)

    Ditkof, J.; Meckel, T. A.; Zeng, H.; Hovorka, S. D.

    2011-12-01

    4D seismic response can be used to understand reservoir fluid substitution related to multiphase fluid flow. Time lapse seismic surveys have been conducted internationally at well-known CCS field sites like Otway, Weyburn, and Sleipner as well as downhole measurements at Frio and Cranfield in the United States. We present results from the first 4D survey conducted in the U.S. for CCS purposes. Since 2008 continuous CO2 injection has occurred at an EOR project in Cranfield, Mississippi, also the location of our SECARB CCS demonstration project funded by DOE's Regional Carbon Sequestration Partnership. 4D response has been characterized after 3 years of injection, where >3 million tons of CO2 remain in the subsurface. Results from 4D stratal slices show a definitive but complicated CO2 response in the injection interval, and no coherent response above or below the injection interval. Clear examples of seismic amplitude response are seen near injection wells. Qualitatively, some areas that have received large amounts of CO2 do not have coherent seismic response, indicating that 4D response to injected CO2 in some parts of the field is likely to be masked by residual oil, gas, and brine related to historic production (1960's). To further quantify the seismic response, well log data shows that Vp decreases before becoming mostly constant, Vs increases linearly, and density slightly decreases in the injection zone. This is a similar expected result to that observed at other sites. Forward seismic modeling and flow simulation have been integrated to understand seismic response in relation to fluid properties and distribution. Seismic understanding may lead to improved understanding of sweep efficiency (capacity) as well as define sensitivity of seismic imaging for quantifying CO2 storage.

  19. The mechanism of PDT-induced electrical blockade: the dependence of time-lapse localization of talaporfin sodium on the cell death phenotypes in rat cardiac myocytes

    NASA Astrophysics Data System (ADS)

    Ito, A.; Matsuo, H.; Suenari, T.; Miyoshi, S.; Takatsuki, S.; Ogawa, S.; Arai, T.

    2009-02-01

    We have proposed a new type of atrial fibrillation treatment with the early state photodynamic therapy (PDT), in which the interval time between the photosensitizer injection and irradiation is shorter than that in conventional way. We had demonstrated the acute electrical blockade by the PDT with talaporfin sodium and a red (670 nm) diode laser in ex vivo and in vivo experiment using rat normal myocardial tissue. The previous study of intracellular Ca2+ concentration measurement in rat cardiac myocytes during the PDT indicated that Ca2+ influx induced by the plasma membrane damage might be the main cause of the acute reaction of myocardial tissue. We found that the cell damage of cardiac myocytes triggered by the PDT was mainly influenced by the site where the photosensitizer exists. In this study, we examined the relationship between the sites of talaporfin sodium existing and cell death phenotypes in response to the PDT, in order to clarify the mechanism of the acute electrical blockade induced by the PDT in myocardial tissue. The talaporfin sodium fluorescence was observed after the various incubation times to visualize the time-lapse intracellular photosensitizer localization. The distribution of the photosensitizer was dependent on the incubation time. The change in intracellular Ca2+ concentration during the PDT was examined with a fluorescent Ca2+ indicator by a high-speed Nipkow confocal laser microscope (CSU-X1, Yokogawa Electric Company). We obtained the Ca2+ dynamics during the PDT which can explain the PDT-induced cell death pathways. We concluded that the Ca2+ influx induced by plasma membrane damage is the possible mechanism of the electrical blockade by the early state PDT.

  20. Assessing clogging processes caused by biofilm growth and organic particle accumulation in constructed wetlands using time-lapse electrical resistivity tomography method

    NASA Astrophysics Data System (ADS)

    Mahjoub, Himi; Tapias, Josefina C.; Lovera, Raúl; Rivero, Lluís; Font, Xavier; Casas, Albert

    2016-04-01

    Constructed wetlands for removing pollutants from wastewater in small communities are growing rapidly in many regions of the world. The advantages over conventional mechanical sanitation systems, where land availability is not a limiting factor, are low energy requirements, easy operation and maintenance, low sludge production and cost-effectivity. Nevertheless, with time the cleaning process can result in gradual clogging of the porous layer by suspended solids, bacterial film, chemical precipitates and compaction. The clogging development causes decrease of hydraulic conductivity, reduced oxygen supply and further leads to a rapid decrease of the treatment performance. As the investment involved in reversing clogging can represent a substantial fraction of the cost of a new system it is essential to assess in advance the evolution of clogging process and detect potential failures in the system. Since there is a lack of experiences for monitoring the functionality of constructed wetlands time-lapse electrical resistivity tomography studies have been conducted at horizontal sub-surface flow municipal wastewater treatment wetlands of Catalonia (Spain). The results of this research show that electrical resistivity tomography can be a very useful technique for assessing the extent of silting up processes that clog the subsurface flow constructed wetlands through the gravel layer. In the unsaturated zone, the electrical resistivity is greater at the end of the filter, since the pores contains air which is dielectric, while at the beginning of the filter the resistivity is lower because the electrical conduction of organic matter around the mineral grains. Conversely, in the saturated zone, the electrical resistivity is lower at the end of the filter, since pores contain a higher proportion of high ionic conductivity wastewater, while at the beginning of the filter the electrical resistivity is higher because of the lower porosity due to the clogging process.

  1. Time-lapse cinematography-compatible polystyrene-based microwell culture system: a novel tool for tracking the development of individual bovine embryos.

    PubMed

    Sugimura, Satoshi; Akai, Tomonori; Somfai, Tamás; Hirayama, Muneyuki; Aikawa, Yoshio; Ohtake, Masaki; Hattori, Hideshi; Kobayashi, Shuji; Hashiyada, Yutaka; Konishi, Kazuyuki; Imai, Kei

    2010-12-01

    We have developed a polystyrene-based well-of-the-well (WOW) system using injection molding to track individual embryos throughout culture using time-lapse cinematography (TLC). WOW culture of bovine embryos following in vitro fertilization was compared with conventional droplet culture (control). No differences between control- and WOW-cultured embryos were observed during development to the blastocyst stage. Morphological quality and inner cell mass (ICM) and trophectoderm (TE) cell numbers were not different between control- and WOW-derived blastocysts; however, apoptosis in both the ICM and TE cells was reduced in WOW culture (P < 0.01). Oxygen consumption in WOW-derived blastocysts was closer to physiological level than that of control-derived blastocysts. Moreover, WOW culture improved embryo viability, as indicated by increased pregnancy rates at Days 30 and 60 after embryo transfer (P < 0.05). TLC monitoring was performed to evaluate the cleavage pattern and the duration of the first cell cycle of embryos from oocytes collected by ovum pickup; correlations with success of pregnancy were determined. Logistic regression analysis indicated that the cleavage pattern correlated with success of pregnancy (P < 0.05), but cell cycle length did not. Higher pregnancy rates (66.7%) were observed for animals in which transferred blastocysts had undergone normal cleavage, identified by the presence of two blastomeres of the same size without fragmentation, than among those with abnormal cleavage (33.3%). These results suggest that our microwell culture system is a powerful tool for producing and selecting healthy embryos and for identifying viability biomarkers. PMID:20739661

  2. Time-lapse monitoring reveals that vitrification increases the frequency of contraction during the pre-hatching stage in mouse embryos

    PubMed Central

    SHIMODA, Yuki; KUMAGAI, Jin; ANZAI, Mibuki; KABASHIMA, Katsuya; TOGASHI, Kazue; MIURA, Yasuko; SHIRASAWA, Hiromitsu; SATO, Wataru; KUMAZAWA, Yukiyo; TERADA, Yukihiro

    2016-01-01

    Contraction during the blastocyst stage is observed during embryonic development of various mammals, including humans, but the physiological role of this process is not well understood. Using time-lapse monitoring (TLM), we studied the influence of vitrification and contractions on embryonic development in mice. Mouse embryos were cultured at the 2-cell stage. At the 8-cell stage, embryos were randomly divided into a fresh group (FG) and vitrified group (VG) and observed for up to 144 h. Strong contractions (i.e., contractions causing a decrease in volume of more than 20% and expansion of the perivitelline space) occurred significantly more often in unhatched embryos than hatching embryos in both groups. Regarding hatching embryos, contractions in the pre-hatching stage were significantly more frequent in the VG than the FG. Furthermore, mRNA expression levels of genes related to contractions were determined at three time points, the 8-cell stage, early blastocyst stage, and 20 h after blastocoel formation, with quantitative reverse transcription-polymerase chain reaction. There was no significant difference in Hspa1a expression between the FG and VG, but Hspa1a overexpression was observed just after thawing and tended to decrease gradually thereafter in some blastocysts. Furthermore, in the VG, Atp1a1 tended to show higher expression in the strong contraction group than in the weak contraction group. Overall, vitrification is an excellent method for cryopreservation but could increase contractions in the pre-hatching stage and may increase energy demands of the embryo. Observation of contraction by TLM may improve the evaluation of embryo quality. PMID:26806421

  3. Time lapse: Mobile Launcher Moves

    NASA Video Gallery

    The mobile launcher returned from Launch Pad 39B at NASA's Kennedy Space Center in Florida following two weeks of structural and other testing. The 355-foot-tall structure is to be used by the Spac...

  4. Monitoring snowmelt and solute transport at Oslo airport by combining time-lapse electrical resistivity, soil water sampling and tensiometer measurements

    NASA Astrophysics Data System (ADS)

    Bloem, E.; French, H. K.

    2013-12-01

    Monitoring contaminant transport at contaminated sites requires optimization of the configuration of a limited number of samplings points combined with heterogeneous flow and preferential flowpaths. Especially monitoring processes in the unsaturated zone is a major challenge due to the limited volume monitored by for example suction cups and their risk to clog in a highly active degradation zone. To make progress on soil contamination assessment and site characterization there is a strong need to integrate field-sale extensively instrumented tools, with non-invasive (geophysical) methods which provide spatially integrated measurements also in the unsaturated zone. Examples of sites that might require monitoring activities in the unsaturated zone are airports with winter frost where large quantities of de-icing chemicals are used each winter; salt and contaminant infiltration along roads; constructed infiltration systems for treatment of sewerage or landfill seepage. Electrical resistivity methods have proved to be useful as an indirect measurement of subsurface properties and processes at the field-scale. The non-uniqueness of the interpretation techniques can be reduced by constraining the inversion through the addition of independent geophysical measurements along the same profile. Or interpretation and understanding of geophysical images can be improved by the combination with classical measurements of soil physical properties, soil suction, contaminant concentration and temperatures. In our experiment, at the research field station at Gardermoen, Oslo airport, we applied a degradable de-icing chemical and an inactive tracer to the snow cover prior to snowmelt. To study the solute transport processes in the unsaturated zone time-lapse cross borehole electrical resistivity tomography (ERT) measurements were conducted at the same time as soil water samples were extracted at multiple depths with suction cups. Measurements of soil temperature, and soil tension were

  5. Application of quantitative time-lapse imaging (QTLI) for evaluation of Mrp2-based drug–drug interaction induced by liver metabolites

    SciTech Connect

    Nakanishi, Takeo; Ikenaga, Miho; Fukuda, Hajime; Matsunaga, Norikazu; Tamai, Ikumi

    2012-09-01

    We previously reported a quantitative time-lapse imaging (QTLI)-based analysis method to assess drug–drug interactions (DDI) at multidrug resistance-associated protein 2 (Mrp2) in rat sandwich-cultured hepatocyte (SCH) system, utilizing the fluorescent Mrp2 substrate, 5-(and 6)-carboxy-2′,7′-dichlorofluorescein (CDF). Here, we aimed to examine the feasibility of using QTLI to evaluate DDI involving drug metabolite(s) generated in hepatocytes. We used estradiol (E2) and bilirubin as model compounds; both are not substrates of MRP2, whereas their hepatic metabolites, estradiol-17β-glucuronide (E17G) or bilirubin glucuronides, are known to be its substrates as well as inhibitors. When rat SCHs were pre-exposed with E2, fluorescence of CDF accumulated in bile canaliculi decreased depending upon both the duration of pre-exposure and the concentration of extracellular E2. The decrease corresponded with the increase in intracellular concentration of E17G in hepatocytes. Furthermore, cytotoxicity of vinblastine, a substrate of MRP2, was enhanced in SCHs treated with E2. Similarly, CDF accumulated in bile canaliculi was significantly reduced in rat SCHs pre-exposed with bilirubin. In conclusion, these results suggest that phase II biotransformation of a competitor is reflected in alteration of MRP2-mediated CDF transport detected in QTLI. The QTLI might provide a convenient platform to evaluate transporter-based DDIs involving hepatic metabolites of drug candidates without the need to identify the metabolites. -- Highlights: ► Mrp2-mediated CDF transport is inhibited by E2, but not E17G in vesicle study. ► Both E2 and E17G do not compromise CDF formation from CDFDA in hepatocytes. ► CDF accumulation in bile canaliculi is inhibited by E2 or E17G in QTLI. ► Increasing exposure to E2 decreases CDF accumulation in bile canaliculi in QTLI. ► QTLI is feasible to assess Mrp2-based DDI involving drug metabolite in hepatocytes.

  6. A low-cost landslide displacement activity assessment from time-lapse photogrammetry and rainfall data: Application to the Tessina landslide site

    NASA Astrophysics Data System (ADS)

    Gabrieli, F.; Corain, L.; Vettore, L.

    2016-09-01

    Acquiring useful and reliable displacement data from a complex landslide site is often a problem because of large, localized and scattered erosive processes and deformations; the inaccessibility of the site; the high cost of instrumentation and maintenance. However, these data are of fundamental importance not only to hazard assessments but also to understanding the processes at the basis of slope evolution. In this framework, time-lapse photogrammetry can represent a good compromise; the low accuracy is compensated for by the wide-ranging and dense spatial displacement information that can be obtained with inexpensive equipment. Nevertheless, when large displacement monitoring data sets become available, the problem becomes the choice of the most suitable statistical model to describe the probability of movement and adequately simplify the complexity of a scattered, intermittent, and spatially inhomogeneous displacement field. In this paper, an automated displacement detection method, which is based on the absolute image differences and digital correlations from a sequence of photos, was developed and applied to a photographic survey activity at the head of the Tessina landslide (northeastern Italy). The method allowed us to simplify and binarize the displacement field and to recognize the intermittent activity and the peculiar behaviours of different parts of the landslide, which were identified and classified by combining geomorphological and geological information. Moreover, for the first time, sliding correlations between these areas were quantitatively estimated using time-series-based binary logistic regression and the definition of a probability-based directed graph of displacement occurrence that connected the source zones to the lower depletion basin and the main collector channel. Using rainfall data, event-based logistic and Poisson regression models were applied to the upper zones of the landslide to estimate the probability of movement of each scarp

  7. Time-lapse resistivity measurements combined with soil water sampling to characterize solute movement in the unsaturated zone at Oslo airport, Gardermoen

    NASA Astrophysics Data System (ADS)

    Bloem, E.; French, H. K.; Binley, A.; Schotanus, D.; Eggen, G.

    2010-12-01

    Pollution of soils is a widespread problem and is an important part of the still to be implemented Soil Directive (EU). To improve risk assessment, monitoring, and treatment strategies for natural attenuation, we require a better understanding of the effect of soil heterogeneity on contaminant movement and methods for monitoring the effects of this heterogeneity at contaminated sites. Geophysical methods provide indirect measurements of subsurface properties over larger volumes than tradition techniques, and are potentially cost-efficient. However, the usefulness of any individual set of geophysical measurements (akin to a snapshot at one point in time) is severely limited by the problem of non-uniqueness or ambiguity when used to study contaminated sites, where the attendant processes vary in space and time. To make progress on soil contamination assessment and site characterization there is a strong need to integrate quasi field-scale, extensively instrumented tools, such as the multi-compartment sampler, with non-invasive (geophysical) and invasive (soil sampling, soil water sampling) methods. We illustrate this approach in an application to solute transport at Oslo airport, Norway. The impact of annual infiltration of large quantities of de-icing chemicals at Oslo airport, Gardermoen, represents common challenge for all airports with winter frost. It is also similar to the challenge posed by de-icing salt application along roads. At the research field station at Gardermoen, a degradable de-icing chemical and an inactive tracer were added to the snow cover prior to snowmelt and to the surface during an irrigation experiment performed after the snowmelt. In order to link geophysical measurements to solute transport processes in the unsaturated zone, time-lapse cross borehole resistivity as well as surface resistivity measurements were conducted at the same time as soil water samples were extracted. Measurements of soil temperature, and tension were also carried

  8. Utilizing time-lapse micro-CT-correlated bisphosphonate binding kinetics and soft tissue-derived input functions to differentiate site-specific changes in bone metabolism in vivo.

    PubMed

    Tower, R J; Campbell, G M; Müller, M; Glüer, C C; Tiwari, S

    2015-05-01

    The turnover of bone is a tightly regulated process between bone formation and resorption to ensure skeletal homeostasis. This process differs between bone types, with trabecular bone often associated with higher turnover than cortical bone. Analyses of bone by micro-computed tomography (micro-CT) reveal changes in structure and mineral content, but are limited in the study of metabolic activity at a single time point, while analyses of serum markers can reveal changes in bone metabolism, but cannot delineate the origin of any aberrant findings. To obtain a site-specific assessment of bone metabolic status, bisphosphonate binding kinetics were utilized. Using a fluorescently-labeled bisphosphonate, we show that early binding kinetics monitored in vivo using fluorescent molecular tomography (FMT) can monitor changes in bone metabolism in response to bone loss, stimulated by ovariectomy (OVX), or bone gain, resulting from treatment with the anabolic bone agent parathyroid hormone (PTH), and is capable of distinguishing different, metabolically distinct skeletal sites. Using time-lapse micro-CT, longitudinal bone turnover was quantified. The spine showed a significantly greater percent resorbing volume and surface in response to OVX, while mice treated with PTH showed significantly greater resorbing volume per bone surface in the spine and significantly greater forming surfaces in the knee. Correlation studies between binding kinetics and micro-CT suggest that forming surfaces, as assessed by time-lapse micro-CT, are preferentially reflected in the rate constant values while forming and resorbing bone volumes primarily affect plateau values. Additionally, we developed a blood pool correction method which now allows for quantitative multi-compartment analyses to be conducted using FMT. These results further expand our understanding of bisphosphonate binding and the use of bisphosphonate binding kinetics as a tool to monitor site-specific changes in bone metabolism in

  9. Characterizing a Mississippian Carbonate Reservoir for CO2-EOR and Carbon Geosequestration: Applicability of Existing Rock Physics Models and Implications to Feasibility of a Time Lapse Monitoring Program in the Wellington Oil Field, Sumner County, Kansas.

    NASA Astrophysics Data System (ADS)

    Lueck, A. J.; Raef, A. E.

    2015-12-01

    This study will focus on characterizing subsurface rock formations of the Wellington Field, in Sumner County, Kansas, for both geosequestration of carbon dioxide (CO2) in the saline Arbuckle formation and enhanced oil recovery of a depleting Mississippian oil reservoir. Multi-scale data including lithofacies core samples, X-ray diffraction, digital rock physics scans, scanning electron microscope (SEM) imaging, well log data including sonic and dipole sonic, and surface 3D seismic reflection data will be integrated to establish and/or validate a new or existing rock physics model that best represents our reservoir rock types and characteristics. We will acquire compressional wave velocity and shear wave velocity data from Mississippian and Arbuckle cores by running ultrasonic tests using an Ult 100 Ultrasonic System and a 12 ton hydraulic jack located in the geophysics lab in Thompson Hall at Kansas State University. The elastic constants Young's Modulus, Bulk Modulus, Shear (Rigidity) Modulus and Poisson's Ratio will be extracted from these velocity data. Ultrasonic velocities will also be compared to sonic and dipole sonic log data from the Wellington 1-32 well. These data will be integrated to validate a lithofacies classification statistical model, which will be and partially has been applied to the largely unknown saline Arbuckle formation, with hopes for a connection, perhaps via Poisson's ratio, allowing a time-lapse seismic feasibility assessment and potentially developing a transformation of compressional wave sonic velocities to shear wave sonic for all wells, where compressional wave sonic is available. We will also be testing our rock physics model by predicting effects of changing effective (brine + CO2 +hydrocarbon) fluid composition on seismic properties and the implications on feasibility of seismic monitoring. Lessons learned from characterizing the Mississippian are essential to understanding the potential of utilizing similar workflows for the

  10. Noradrenergic Genotype Predicts Lapses in Sustained Attention

    ERIC Educational Resources Information Center

    Greene, Ciara M.; Bellgrove, Mark A.; Gill, Michael; Robertson, Ian H.

    2009-01-01

    Sustained attention is modulated by the neurotransmitter noradrenaline. The balance of dopamine and noradrenaline in the cortex is controlled by the DBH gene. The principal variant in this gene is a C/T change at position-1021, and the T allele at this locus is hypothesised to result in a slower rate of dopamine to noradrenaline conversion than…

  11. Endeavour Mated to SCA Time-Lapse

    NASA Video Gallery

    At the Shuttle Landing Facility at NASA's Kennedy Space Center in Florida, space shuttle Endeavour is mounted atop NASA's Shuttle Carrier Aircraft, or SCA, in preparation for its ferry flight to Ca...

  12. Things Forgotten: Simple Lapse or Serious Problem?

    MedlinePlus

    ... concentration problems that concern you Web Sites Understanding Memory Loss Forgetfulness: Knowing When to Ask for Help Alzheimer's Disease: Unraveling the Mystery ... of Communications and Public Liaison

  13. Mouse tail vertebrae adapt to cyclic mechanical loading by increasing bone formation rate and decreasing bone resorption rate as shown by time-lapsed in vivo imaging of dynamic bone morphometry.

    PubMed

    Lambers, Floor M; Schulte, Friederike A; Kuhn, Gisela; Webster, Duncan J; Müller, Ralph

    2011-12-01

    It is known that mechanical loading leads to an increase in bone mass through a positive shift in the balance between bone formation and bone resorption. How the remodeling sites change over time as an effect of loading remains, however, to be clarified. The purpose of this paper was to investigate how bone formation and resorption sites are modulated by mechanical loading over time by using a new imaging technique that extracts three dimensional formation and resorption parameters from time-lapsed in vivo micro-computed tomography images. To induce load adaptation, the sixth caudal vertebra of C57BL/6 mice was cyclically loaded through pins in the adjacent vertebrae at either 8 N or 0 N (control) three times a week for 5 min (3000 cycles) over a total of 4 weeks. The results showed that mechanical loading significantly increased trabecular bone volume fraction by 20% (p<0.001) and cortical area fraction by 6% (p<0.001). The bone formation rate was on average 23% greater (p<0.001) and the bone resorption rate was on average 25% smaller (p<0.001) for the 8 N group than for the 0 N group. The increase in bone formation rate for the 8 N group was mostly an effect of a significantly increased surface of bone formation sites (on average 16%, p<0.001), while the thickness of bone formation packages was less affected (on average 5% greater, p<0.05). At the same time the surface of bone resorption sites was significantly reduced (on average 15%, p<0.001), while the depth of resorption pits remained the same. For the 8 N group, the strength of the whole bone increased significantly by 24% (p<0.001) over the loading period, while the strain energy density in the trabecular bone decreased significantly by 24% (p<0.001). In conclusion, mouse tail vertebrae adapt to mechanical loading by increasing the surface of formation sites and decreasing the surface of resorption sites, leading to an overall increase in bone strength. This new imaging technique will provide opportunities

  14. Computerized video time lapse study of cell cycle delay and arrest, mitotic catastrophe, apoptosis and clonogenic survival in irradiated 14-3-3sigma and CDKN1A (p21) knockout cell lines.

    PubMed

    Chu, Kenneth; Teele, Noella; Dewey, Michael W; Albright, Norman; Dewey, William C

    2004-09-01

    Computerized video time lapse (CVTL) microscopy was used to observe cellular events induced by ionizing radiation (10-12 Gy) in nonclonogenic cells of the wild-type HCT116 colorectal carcinoma cell line and its three isogenic derivative lines in which p21 (CDKN1A), 14-3-3sigma or both checkpoint genes (double-knockout) had been knocked out. Cells that fused after mitosis or failed to complete mitosis were classified together as cells that underwent mitotic catastrophe. Seventeen percent of the wild-type cells and 34-47% of the knockout cells underwent mitotic catastrophe to enter generation 1 with a 4N content of DNA, i.e., the same DNA content as irradiated cells arrested in G(2) at the end of generation 0. Radiation caused a transient division delay in generation 0 before the cells divided or underwent mitotic catastrophe. Compared with the division delay for wild-type cells that express CDKN1A and 14-3-3sigma, knocking out CDKN1A reduced the delay the most for cells irradiated in G(1) (from approximately 15 h to approximately 3- 5 h), while knocking out 14-3-3sigma reduced the delay the most for cells irradiated in late S and G(2) (from approximately 18 h to approximately 3-4 h). However, 27% of wild-type cells and 17% of 14-3-3sigma(-/-) cells were arrested at 96 h in generation 0 compared with less than 1% for CDKN1A(-/-) and double-knockout cells. Thus expression of CDKN1A is necessary for the prolonged delay or arrest in generation 0. Furthermore, CDKN1A plays a crucial role in generation 1, greatly inhibiting progression into subsequent generations of both diploid cells and polyploid cells produced by mitotic catastrophe. Thus, in CDKN1A-deficient cell lines, a series of mitotic catastrophe events occurred to produce highly polyploid progeny during generations 3 and 4. Most importantly, the polyploid progeny produced by mitotic catastrophe events did not die sooner than the progeny of dividing cells. Death was identified as loss of cell movement, i

  15. Optimal experiment design for time-lapse traveltime tomography

    SciTech Connect

    Ajo-Franklin, J.B.

    2009-10-01

    Geophysical monitoring techniques offer the only noninvasive approach capable of assessing both the spatial and temporal dynamics of subsurface fluid processes. Increasingly, permanent sensor arrays in boreholes and on the ocean floor are being deployed to improve the repeatability and increase the temporal sampling of monitoring surveys. Because permanent arrays require a large up-front capital investment and are difficult (or impossible) to re-configure once installed, a premium is placed on selecting a geometry capable of imaging the desired target at minimum cost. We present a simple approach to optimizing downhole sensor configurations for monitoring experiments making use of differential seismic traveltimes. In our case, we use a design quality metric based on the accuracy of tomographic reconstructions for a suite of imaging targets. By not requiring an explicit singular value decomposition of the forward operator, evaluation of this objective function scales to problems with a large number of unknowns. We also restrict the design problem by recasting the array geometry into a low dimensional form more suitable for optimization at a reasonable computational cost. We test two search algorithms on the design problem: the Nelder-Mead downhill simplex method and the Multilevel Coordinate Search algorithm. The algorithm is tested for four crosswell acquisition scenarios relevant to continuous seismic monitoring, a two parameter array optimization, several scenarios involving four parameter length/offset optimizations, and a comparison of optimal multi-source designs. In the last case, we also examine trade-offs between source sparsity and the quality of tomographic reconstructions. One general observation is that asymmetric array lengths improve localized image quality in crosswell experiments with a small number of sources and a large number of receivers. Preliminary results also suggest that high-quality differential images can be generated using only a small number of optimally positioned sources.

  16. Time-Lapse: Mobile Launcher Moves to Launch Pad

    NASA Video Gallery

    The mobile launcher that will host NASA's Space Launch System and new Orion spacecraft was moved to Launch Pad 39B at NASA's Kennedy Space Center in Florida to begin two weeks of structural and sys...

  17. Time-Lapse View of Earth's Limb from the ISS

    NASA Video Gallery

    Bright swaths of red in the upper atmosphere, known as airglow, can be seen in this video captured by the International Space Station. NASA's ICON mission, with a planned launch for the summer of 2...

  18. Imaging Mouse Development with Confocal Time-Lapse Microscopy

    PubMed Central

    Nowotschin, Sonja; Ferrer-Vaquer, Anna; Hadjantonakis, Anna-Katerina

    2012-01-01

    The gene expression, signaling, and cellular dynamics driving mouse embryo development have emerged through embryology and genetic studies. However, since mouse development is a temporally regulated three-dimensional process, any insight needs to be placed in this context of real-time visualization. Live imaging using genetically encoded fluorescent protein reporters is pushing the envelope of our understanding by uncovering unprecedented insights into mouse development and leading to the formulation of quantitative accurate models. PMID:20691876

  19. Adaptations of motor neural structures' activity to lapses in attention.

    PubMed

    Derosière, Gérard; Billot, Maxime; Ward, E Tomas; Perrey, Stéphane

    2015-01-01

    Sustained attention is fundamental for cognition and when impaired, impacts negatively on important contemporary living skills. Degradation in sustained attention is characterized by the time-on-task (TOT) effect, which manifests as a gradual increase in reaction time (RT). The TOT effect is accompanied by changes in relative brain activity patterns in attention-related areas, most noticeably in the prefrontal cortex (PFC) and the right parietal areas. However, activity changes in task-relevant motor structures have not been confirmed to date. This article describes an investigation of such motor-related activity changes as measured with 1) the time course of corticospinal excitability (CSE) through single-pulse transcranial magnetic stimulation; and 2) the changes in activity of premotor (PMC), primary motor (M1), PFC, and right parietal areas by means of near-infrared spectroscopy, during a sustained attention RT task exhibiting the TOT effect. Our results corroborate established findings such as a significant increase (P < 0.05) in lateral prefrontal and right parietal areas activity after the emergence of the TOT effect but also reveal adaptations in the form of motor activity changes--in particular, a significant increase in CSE (P < 0.01) and in primary motor area (M1) activity (P < 0.05).

  20. Integrated time-lapse geoelectrical imaging of wetland hydrological processes

    NASA Astrophysics Data System (ADS)

    Uhlemann, S. S.; Sorensen, J. P. R.; House, A. R.; Wilkinson, P. B.; Roberts, C.; Gooddy, D. C.; Binley, A. M.; Chambers, J. E.

    2016-03-01

    Wetlands provide crucial habitats, are critical in the global carbon cycle, and act as key biogeochemical and hydrological buffers. The effectiveness of these services is mainly controlled by hydrological processes, which can be highly variable both spatially and temporally due to structural complexity and seasonality. Spatial analysis of 2-D geoelectrical monitoring data integrated into the interpretation of conventional hydrological data has been implemented to provide a detailed understanding of hydrological processes in a riparian wetland. A two-layered hydrological system was observed in the peat. In the lower part of the peat, upwelling of deeper groundwater from underlying deposits was considered the driver for a 30% increase in peat resistivity during Winter/Spring. In Spring/Summer there was a 60% decrease in resistivity in the near-surface peats due to plant transpiration and/or microbial activity. Water exchange between the layers only appeared to be initiated following large drops in the encircling surface water stage. For the first time, we demonstrated that automated interpretation of geoelectrical data can be used to quantify ground movement in the vertical direction. Here, we applied this method to quantify shrink-swell of expandable soils, affecting hydrological parameters, such as, porosity and permeability. This study shows that an integrated interpretation of hydrological and geophysical data can significantly improve the understanding of wetland hydrological processes. Potentially, this approach can provide the basis for the evaluation of ecosystem services and may aid in the optimization of wetland management strategies.

  1. Opioid Abstinence Reinforcement Delays Heroin Lapse during Buprenorphine Dose Tapering

    ERIC Educational Resources Information Center

    Greenwald, Mark K.

    2008-01-01

    A positive reinforcement contingency increased opioid abstinence during outpatient dose tapering (4, 2, then 0 mg/day during Weeks 1 through 3) in non-treatment-seeking heroin-dependent volunteers who had been maintained on buprenorphine (8 mg/day) during an inpatient research protocol. The control group (n = 12) received $4.00 for completing…

  2. 26 CFR 25.2704-1 - Lapse of certain rights.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... reason of the transfer. Example 5. D and D's two children, A and B, are partners in Partnership X. Each... right in a corporation or partnership (an “entity”) is a transfer by the individual directly or... with respect to any matter of the entity. In the case of a partnership, the right of a general...

  3. 26 CFR 25.2704-1 - Lapse of certain rights.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... reason of the transfer. Example 5. D and D's two children, A and B, are partners in Partnership X. Each... right in a corporation or partnership (an “entity”) is a transfer by the individual directly or... with respect to any matter of the entity. In the case of a partnership, the right of a general...

  4. 26 CFR 25.2704-1 - Lapse of certain rights.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... reason of the transfer. Example 5. D and D's two children, A and B, are partners in Partnership X. Each... right in a corporation or partnership (an “entity”) is a transfer by the individual directly or... with respect to any matter of the entity. In the case of a partnership, the right of a general...

  5. Spatially Locating Time-Lapsed Relative Velocity Changes in Yellowstone

    NASA Astrophysics Data System (ADS)

    Seats, K.; Lawrence, J. F.

    2014-12-01

    In this study, we examine temporal subsurface relative velocity variations in Yellowstone. This project region has a much larger spatial scaling, as well as a much longer, less abrupt, temporal change than most of the other active settings in which ambient noise temporal velocity variations are measured. By examining the time lag of the ambient Noise Correlation Function (NCF) for a given station pair, we can extract relative velocity variations. These changes represent either subsurface velocity changes (in active settings) or changes due to the seasonal variation in the ambient seismic field. We improve the temporal and spectral stability of the NCFs through a new filter (the adaptive covariance filter - ACF), which allows us to evaluate the main Rayleigh wave arrival rather than coda. By making use of the main arrival the spatial location of these changes can be better understood. We examine all of the available data near the Yellowstone National Park area, including the USArray and the NOISY networks. Using the ACF, we calculate robust NCFs for all station pairs (overlapping in time). We then obtain time-lag estimates of the main arrival for various calendar times throughout the data availability. These lags are then compared to the lags observed at all other spatial station pairs. Using these many combinations of station pairs and lags, we build and perform an inversion, where these relative velocities are compared to a background velocity at subsequently different times. The spatial location of the velocity changes can be observed over time, and it can be ascertained as to whether these observed velocity variations are due to subsurface changes (such as the inflationary uplift from 2004-2010 in Yellowstone), or whether the observed changes are more indicative of the regional changes in the ambient seismic field.

  6. Flying qualities - A costly lapse in flight-control design

    NASA Technical Reports Server (NTRS)

    Berry, D. T.

    1982-01-01

    Generic problems in advanced aircraft with advanced control systems which suffer from control sensitivity, sluggish response, and pilot-induced oscillation tendencies are examined, with a view to improving techniques for eliminating the problems in the design phase. Results of two NASA and NASA/AIAA workshops reached a consensus that flying qualities criteria do not match control system development, control system designers are not relying on past experience in their field, ground-based simulation is relied on too heavily, and communications between flying qualities and control systems engineers need improvement. A summation is offered in that hardware and software have outstripped the pilot's capacity to use the capabilities which new aircraft offer. The flying qualities data base is stressed to be dynamic, and continually redefining the man/machine relationships.

  7. Surface GPR time-lapse monitoring of hillslope processes

    NASA Astrophysics Data System (ADS)

    Cassiani, G.; Giustiniani, M.; Strobbia, C.; Fusi, N.; Crosta, G. B.; Frattini, P.

    2004-12-01

    The hydrological dynamics along mountain slopes control many important phenomena, such as shallow landslide triggering and flood generation. The governing factors include: soil thickness, slope and bedrock morphology, rainfall pattern and subsurface groundwater conditions, both in vadose zone and under the water table. We present the results of a monitoring project currently undertaken on a large slope parcel in the Alpine region of Northern Italy. Both direct (piezometers, tensiometers, etc.) and indirect (geophysical) methods are being used to characterize slope and bedrock morphology and changes in soil moisture content. In this note, we focus on the use of ground-penetrating-radar (GPR) in surface to surface configuration. Recently, the use of multi and single offset GPR has been advocated for intermediate scale monitoring of moisture content changes in agricultural soils, e.g. in vineyards. We investigate the applicability of using similar techniques along hillslopes. The monitoring has been performed using a PulseEkko 100 radar system. The estimation of moisture content in the first couple of meters below the soil surface is based on the differential arrival time of direct waves through air and through the soil itself . In addition, information about the bedrock morphology can also be derived. However, care must be taken to identify complex wave propagation patterns in the data caused by waveguide phenomena in the soil layer and critical refraction from the soil-bedrock interface. Such energy pathways can complicate the interpretation, but also carry significant information about the site structure and hydrological dynamics.

  8. Reclaiming Instructional Integrity: Probing Ethical Lapses in College Teaching

    ERIC Educational Resources Information Center

    Travis, Jon E.; Scott, Joyce A.

    2014-01-01

    Suffering from chronic underfunding and in a headlong race to compete with for-profit higher education, institutions across America are struggling to maintain their operations, and some are forced into desperate measures just to survive. Administrators and faculty faced with these challenges are not immune to compromising the quality of…

  9. Data link relay design. [space probe with entry at Uranus

    NASA Technical Reports Server (NTRS)

    Parsons, P.

    1974-01-01

    The data link for the Ames baseline probe as applied to the MJU spacecraft specifically with an entry at Uranus is analyzed. A frequency analysis, a trajectory analysis, and a discussion of the effects on the spacecraft design by the data link are presented. The possibilities of a two-way link are considered.

  10. 78 FR 32632 - 36(b)(1) Arms Sales Notification

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-31

    ...-36B Infrared Decoy Flares, 30,000 RR-188 w/BBU-35B Training Chaff, 3,750 BDU-33D/B w/lugs/ Mk4 spot... (RNLAF) F-16 Formal Training Unit (FTU), 50,000 MJU-7B w/BBU-36B Infrared Decoy Flares, 30,000 RR-188...

  11. Time lapse imaging of thaw-bulb development beneath arctic streams using ground-penetrating radar

    NASA Astrophysics Data System (ADS)

    Brosten, T. R.; Bradford, J. H.; McNamara, J. P.; Bowden, W.; Gooseff, M. N.

    2004-12-01

    We are investigating the responses of arctic tundra stream geomorphology, hyporheic zone hydrology, and biogeochemical cycling to climate change. Field results from summer, 2003, demonstrate that GPR is an effective tool for imaging the depth to sub-stream permafrost. The results presented here are the next step in the use of ground-penetrating radar (GPR) data for measuring sub-stream thaw over the summer season. We acquired a series of GPR profiles at seven sites from May - September, 2004, using 100, 200, and 400 MHz antennas. We selected sites with the objective of including stream reaches spanning a range of geomorphologic conditions in rivers and streams on Alaska's North Slope. Generally the streams can be placed into two categories: 1) as low-energy water flow with organic material lining the streambeds (peat streams) or 2) as high-energy water flow with cobble to gravel material lining the streambeds (alluvial streams). We acquired data using a pulsed radar system with high-power transmitter. Early in the field season we used the 400 and 200 MHz antennas to maximize resolution potential, then gradually shifted to the lower frequency 100 MHz antennas later in the season to increase depth of penetration. We placed the radar antennas in the bottom of a small rubber boat, then pulled the boat across the bank and through the stream while triggering at a constant interval via a string odometer system. Depth to permafrost was verified by pressing a metal probe through the active layer to the point of refusal. In addition, we recorded temperature data using thermocouples placed at varying substream depths along two of the seven GPR profiles. We used the temperature profiles to constrain and verify the GPR interpretation. At several sites we obtained excellent results and have produced images of thaw-bulb growth through the summer season in both alluvial and peat stream morphologies.

  12. Very high resolution time-lapse photography for plant and ecosystems research

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Very high resolution gigapixel photography increasingly is being used to support a broad range of ecosystem and physical process research because it offers an inexpensive means of simultaneously collecting information at a range of spatial scales. Recently, methods have been developed to incorporate...

  13. Relearning by Normal and Retarded Children Following a Three-Month Lapse in Instruction.

    ERIC Educational Resources Information Center

    Sindelar, Paul T.; Rosenberg, Michael S.

    The need for continuous instruction of five severely or profoundly impaired (SPI) students (12-18 years old) was examined in light of recent court decisions regarding extended year schooling. SPI Ss and a control group of normal IQ Ss were taught new discriminations. After a 3-month break, the discriminations were taught with procedures, methods,…

  14. Time-lapse gravity data for monitoring and modeling artificial recharge through a thick unsaturated zone

    USGS Publications Warehouse

    Kennedy, Jeffrey R.; Ferre, Ty P.A.; Creutzfeldt, Benjamin

    2016-01-01

    Groundwater-level measurements in monitoring wells or piezometers are the most common, and often the only, hydrologic measurements made at artificial recharge facilities. Measurements of gravity change over time provide an additional source of information about changes in groundwater storage, infiltration, and for model calibration. We demonstrate that for an artificial recharge facility with a deep groundwater table, gravity data are more sensitive to movement of water through the unsaturated zone than are groundwater levels. Groundwater levels have a delayed response to infiltration, change in a similar manner at many potential monitoring locations, and are heavily influenced by high-frequency noise induced by pumping; in contrast, gravity changes start immediately at the onset of infiltration and are sensitive to water in the unsaturated zone. Continuous gravity data can determine infiltration rate, and the estimate is only minimally affected by uncertainty in water-content change. Gravity data are also useful for constraining parameters in a coupled groundwater-unsaturated zone model (Modflow-NWT model with the Unsaturated Zone Flow (UZF) package).

  15. Construction of a Heated Incubation Chamber around a Microscope Stage for Time-Lapse Imaging.

    PubMed

    Kulesa, Paul M; Kasemeier-Kulesa, Jennifer C

    2007-01-01

    INTRODUCTIONIntravital imaging of embryogenesis has the potential to provide valuable information on cell proliferation, cell shape changes, and cell migratory behaviors. However, most embryo model systems require a temperature-controlled environment. Several expensive commercially available temperature control devices have emerged, including microscope stages surrounded by custom-fit Plexiglas boxes, heated plates for culture dishes, and objective warmers for water-immersion lenses, that strictly control temperature and, in some cases, help control local gas mixtures. This protocol describes an easy-to-assemble, cost-effective, custom-made cardboard box and incubator, adaptable to each user's specifications and microscope set-up. The cardboard box fits around the microscope, primarily the stage area, to assist in maintaining a prescribed temperature near the microscope stage. Warmed air, blown into the box enclosure from an incubator, circulates around the stage. The heated incubation box maintains a set temperature with minimal fluctuations and has been tested and utilized for studies of chick, mouse, and zebrafish embryogenesis. PMID:21357130

  16. Time-lapse electrical resistivity tomography of a water infiltration test on Johannishus Esker, Sweden

    NASA Astrophysics Data System (ADS)

    Ulusoy, İnan; Dahlin, Torleif; Bergman, Bo

    2015-05-01

    Managed aquifer recharge (MAR) is an efficient way to remove organic matter from raw water and, at the same time, reduce temperature variation. Two MAR sites were constructed by Karlskrona municipality on Johannishus Esker in Sweden. One of these sites, Vång, was monitored for electrical conductivity and electrical resistivity (using electrical resistivity tomography - ERT) during a 9-week tracer infiltration test. The aim of the monitoring was to map the pathways of the infiltrated water, with the overall goal to increase the efficiency of the MAR. ERT proved useful in determining both the nature of the esker formation and the water migration pathways. In Vång, the esker ridge follows a tectonically controlled paleo-valley. The fault/fracture zone in the bedrock along this paleo-valley was mapped. During the tracer test, the infiltrated water was detected in the area close to the infiltration ponds, whereas far-situated observation wells were less affected. For sequential infiltration and recharge periods in MAR, the timing of the well pumping is another important factor. Natural groundwater flow direction was a determinant in the infiltration process, as expected. ERT measurements provide supplementary data for site selection, for monitoring the functionality of the MAR sites, and for revealing the geological, hydrogeological and structural characteristics of the site.

  17. Time-lapse Joint Inversion of Geophysical Data and its Applications to Geothermal Prospecting - GEODE

    SciTech Connect

    Revil, Andre

    2015-12-31

    The objectives of this project were to develop new algorithms to decrease the cost of drilling for geothermal targets during the exploration phase of a hydrothermal field and to improve the monitoring of a geothermal field to better understand its plumbing system and keep the resource renewable. We developed both new software and algorithms for geothermal explorations (that can also be used in other areas of interest to the DOE) and we applied the methods to a geothermal field of interest to ORMAT in Nevada.

  18. Investigating hydrological contributions to volcano monitoring signals: a time-lapse gravity example

    NASA Astrophysics Data System (ADS)

    Hemmings, B.; Gottsmann, J.; Whitaker, F.; Coco, A.

    2016-10-01

    Geophysical techniques are widely used to monitor volcanic unrest. A number of studies have also demonstrated that hydrological processes can produce or trigger geophysical signals. Hydrologically induced gravity signals have previously been recorded by specifically designed gravity surveys as well as, inadvertently, by volcano monitoring studies. Water table corrections of microgravity surveys are commonplace. However, the fluctuations of the water table beneath survey locations are often poorly known, and such a correction fails to account for changes in water-mass storage in the unsaturated zone. Here, we combine 2-D axis-symmetrical numerical fluid-flow models with an axis-symmetric, distributed-mass, gravity calculation to model gravity changes in response to fluctuating hydrological recharge. Flow simulations are based on tropical volcanic settings where high surface permeabilities promote thick unsaturated zones. Our study highlights that mass storage (saturation) changes within the unsaturated zone beneath a survey point can generate recordable gravity changes. We show that for a tropical climate, recharge variations can generate gravity variations of over 150 μGal; although, we demonstrate that for the scenarios investigated here, the probability of recording such large signals is low. Our modelling results indicate that microgravity survey corrections based on water table elevation may result in errors of up to 100 μGal. The effect of inter-annual recharge fluctuations dominate over seasonal cycles which makes prediction and correction of the hydrological contribution more difficult. Spatial hydrogeological heterogeneity can also impact on the accuracy of relative gravity surveys, and can even result in the introduction of additional survey errors. The loading fluctuations associated with saturation variations in the unsaturated zone may also have implications for other geophysical monitoring techniques, such as geodetic monitoring of ground deformation.

  19. Lapses in Education Policy Formulation Processes in Nigeria: Implications for the Standard of Education

    ERIC Educational Resources Information Center

    Oyedeji, Samson Oyelola

    2015-01-01

    Nigeria's Education Policy is quite laudable yet her investments in education are not too rewarding considering the deteriorating educational standards. The poor performance of the education sector in Nigeria, which is evident in the falling in standard of education and poor quality, has become very worrisome. What is the problem? Is the…

  20. Influence of the geomembrane on time-lapse ERT measurements for leachate injection monitoring.

    PubMed

    Audebert, M; Clément, R; Grossin-Debattista, J; Günther, T; Touze-Foltz, N; Moreau, S

    2014-04-01

    Leachate recirculation is a key process in the operation of municipal waste landfills as bioreactors. To quantify the water content and to evaluate the leachate injection system, in situ methods are required to obtain spatially distributed information, usually electrical resistivity tomography (ERT). However, this method can present false variations in the observations due to several parameters. This study investigates the impact of the geomembrane on ERT measurements. Indeed, the geomembrane tends to be ignored in the inversion process in most previously conducted studies. The presence of the geomembrane can change the boundary conditions of the inversion models, which have classically infinite boundary conditions. Using a numerical modelling approach, the authors demonstrate that a minimum distance is required between the electrode line and the geomembrane to satisfy the good conditions of use of the classical inversion tools. This distance is a function of the electrode line length (i.e. of the unit electrode spacing) used, the array type and the orientation of the electrode line. Moreover, this study shows that if this criterion on the minimum distance is not satisfied, it is possible to significantly improve the inversion process by introducing the complex geometry and the geomembrane location into the inversion tools. These results are finally validated on a field data set gathered on a small municipal solid waste landfill cell where this minimum distance criterion cannot be satisfied.

  1. The Relation of Mild Traumatic Brain Injury to Chronic Lapses of Attention

    ERIC Educational Resources Information Center

    Pontifex, Matthew B.; Broglio, Steven P.; Drollette, Eric S.; Scudder, Mark R.; Johnson, Chris R.; O'Connor, Phillip M.; Hillman, Charles H.

    2012-01-01

    We assessed the extent to which failures in sustained attention were associated with chronic mild traumatic brain injury (mTBI) deficits in cognitive control among college-age young adults with and without a history of sport-related concussion. Participants completed the ImPACT computer-based assessment and a modified flanker task. Results…

  2. Investigating Terrain Effects on Nearshore Cloud Evolution in Deepwave through Time-Lapse Photogrammetry

    NASA Astrophysics Data System (ADS)

    Osborne, T. C.; Billings, B. J.

    2014-12-01

    Stereo images of cloud patterns and nearshore waves upstream of the Southern Alps during the DEEPWAVE field campaign are presented through photogrammetric analysis. The photos highlighted in this case were taken in the afternoon of Friday, 13 June 2014. These photos were chosen because they may allow for focused analysis of terrain effects on cloud evolution. Stratocumulus and other cumuliform, as well as cirrus clouds were captured as the sun set over the Tasman Sea, one of the South Pacific Ocean's marginal seas. Breaks in the thin band of stratocumulus along the shoreline, as well as the total time for cloud layer dissipation are also of interest. A possible barrier jet causing the southward motion of the stratocumulus layer is also investigated. Views look northwest from Serpentine Road in Kumara Junction, South Island, New Zealand. An Integrated Sounding System (ISS) located at the Hokitika Airport was the primary source of vertical profiles. The upper air sounding closest to the shoot time and location, plotted from Hokitika's 11:05 UTC upsonde data, shows 10 mph NE winds near the surface. Images were taken on days with research flights over New Zealand from 2 June to 23 June 2014 to match DEEPWAVE objectives. On the night of 13 June 2014, NSF/NCAR's HIAPER GV research aircraft completed a flight from Christchurch over the South Island. This flight became known as Intensive Observing Period 3 (IOP 3) Sensitivity Flight. Methods applied in the Terrain-Induced Rotor Experiment (T-REX) by Grubišić and Grubišić (2007) were closely followed while capturing stereo photographic images. Two identical cameras were positioned with a separation baseline near 270 meters. Each camera was tilted upward approximately seven degrees and carefully positioned to capture parallel fields of view of the site. Developing clouds were captured using synchronized camera timers on a five second interval. Ultimately, cloud locations and measurements can be determined using the recorded GPS locations of the cameras. The Camera Calibration Toolbox available for MATLAB was used in order to perform these elaborate triangulation calculations.

  3. Time-lapse contact microscopy of cell cultures based on non-coherent illumination

    PubMed Central

    Gabriel, Marion; Balle, Dorothée; Bigault, Stéphanie; Pornin, Cyrille; Gétin, Stéphane; Perraut, François; Block, Marc R.; Chatelain, François; Picollet-D’hahan, Nathalie; Gidrol, Xavier; Haguet, Vincent

    2015-01-01

    Video microscopy offers outstanding capabilities to investigate the dynamics of biological and pathological mechanisms in optimal culture conditions. Contact imaging is one of the simplest imaging architectures to digitally record images of cells due to the absence of any objective between the sample and the image sensor. However, in the framework of in-line holography, other optical components, e.g., an optical filter or a pinhole, are placed underneath the light source in order to illuminate the cells with a coherent or quasi-coherent incident light. In this study, we demonstrate that contact imaging with an incident light of both limited temporal and spatial coherences can be achieved with sufficiently high quality for most applications in cell biology, including monitoring of cell sedimentation, rolling, adhesion, spreading, proliferation, motility, death and detachment. Patterns of cells were recorded at various distances between 0 and 1000 μm from the pixel array of the image sensors. Cells in suspension, just deposited or at mitosis focalise light into photonic nanojets which can be visualised by contact imaging. Light refraction by cells significantly varies during the adhesion process, the cell cycle and among the cell population in connection with every modification in the tridimensional morphology of a cell. PMID:26459014

  4. Mind wandering minimizes mind numbing: Reducing semantic-satiation effects through absorptive lapses of attention.

    PubMed

    Mooneyham, Benjamin W; Schooler, Jonathan W

    2016-08-01

    Mind wandering is associated with perceptual decoupling: the disengagement of attention from perception. This decoupling is deleterious to performance in many situations; however, we sought to determine whether it might occur in the service of performance in certain circumstances. In two studies, we examined the role of mind wandering in a test of "semantic satiation," a phenomenon in which the repeated presentation of a word reduces semantic priming for a subsequently presented semantic associate. We posited that the attentional and perceptual decoupling associated with mind wandering would reduce the amount of satiation in the semantic representations of repeatedly presented words, thus leading to a reduced semantic-satiation effect. Our results supported this hypothesis: Self-reported mind-wandering episodes (Study 1) and behavioral indices of decoupled attention (Study 2) were both predictive of maintained semantic priming in situations predicted to induce semantic satiation. Additionally, our results suggest that moderate inattention to repetitive stimuli is not sufficient to enable "dishabituation": the refreshment of cognitive performance that results from diverting attention away from the task at hand. Rather, full decoupling is necessary to reap the benefits of mind wandering and to minimize mind numbing.

  5. A time-lapse lidar survey of the Mam Tor landslide, Derbyshire, UK.

    NASA Astrophysics Data System (ADS)

    Hodgetts, David; Rutter, Ernest

    2013-04-01

    Since 2004 a terrestrial lidar survey of the Mam Tor landslide in Castleton, Derbyshire, has been undertaken each year. Using a Riegl LMSZ420i laser scanner, the data has been collected during the winter months, while the vegetation is at a minimum, to ensure the surveys record a surface as close to the true geometry of the landslip as possible. These surveys, when combined and viewed in sequence provide an accurate record of the landslides movement over this time. The main challenge in comparing yearly scans of a progressively moving feature (at up to 500mm/year) is to ensure that each year's scan is in the correct place relative to the others, to this end features outside of the landslip are used as reference points to ensure consistent cross referencing of the landslip scans. In addition to this each year the laser scanner is sited in the same position within the study area, to ensure the same areal coverage over consecutive years. In-house software called Virtual Reality Geological Studio (VRGS) is used to interpret and analyse the landslip data (in both point cloud and triangulated mesh form), providing tools for comparing surface elevation, but also to tracking individual features (such as individual boulders) from year to year allowing movement vectors to be mapped across the area of the landslip. These vectors can then be compared with other measurements from total-station surveys to act as a check on the validity of the lidar mapping approach. Topographic sections will be shown through several parts of the slip to facilitate year by year comparison. The landslide itself has formed within the Carboniferous Edale Mudstone Formation, is approximately 900m long, 270 to 300m wide and up to 20m thick. The landslip is estimated to be over 3200 years old.

  6. Sea-floor-mounted rotating side-scan sonar for making time-lapse sonographs

    USGS Publications Warehouse

    Rubin, David M.; McCulloch, David S.; Hill, H. R.

    1983-01-01

    Records that are collected with this system offer several advantages over records that are collected with towed systems. Bottom features are presented in nearly true plan geometry, and transducer yaw, pitch, and roll are eliminated. Most importantly, repeated observations can be made from a single point, and bedform movements of <50 cm can be measured. In quiet seas the maximum useful range of the system varies from 30 m (for mapping ripples) to 200 m (for mapping 10-m wavelength sand waves) to 450 m or more (for mapping gravel patches).

  7. 26 CFR 1.83-5 - Restrictions that will never lapse.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... respect to such value. If stock in a corporation is subject to a nonlapse restriction which requires the transferee to sell such stock only at a formula price based on book value, a reasonable multiple of earnings..., the fair market value of the X stock is includible in E's gross income as compensation for...

  8. Analyzing In Vivo Cell Migration using Cell Transplantations and Time-lapse Imaging in Zebrafish Embryos.

    PubMed

    Giger, Florence A; Dumortier, Julien G; David, Nicolas B

    2016-04-29

    Cell migration is key to many physiological and pathological conditions, including cancer metastasis. The cellular and molecular bases of cell migration have been thoroughly analyzed in vitro. However, in vivo cell migration somehow differs from in vitro migration, and has proven more difficult to analyze, being less accessible to direct observation and manipulation. This protocol uses the migration of the prospective prechordal plate in the early zebrafish embryo as a model system to study the function of candidate genes in cell migration. Prechordal plate progenitors form a group of cells which, during gastrulation, undergoes a directed migration from the embryonic organizer to the animal pole of the embryo. The proposed protocol uses cell transplantation to create mosaic embryos. This offers the combined advantages of labeling isolated cells, which is key to good imaging, and of limiting gain/loss of function effects to the observed cells, hence ensuring cell-autonomous effects. We describe here how we assessed the function of the TORC2 component Sin1 in cell migration, but the protocol can be used to analyze the function of any candidate gene in controlling cell migration in vivo.

  9. Multidimensional immunolabeling and 4D time-lapse imaging of vital ex vivo lung tissue

    PubMed Central

    Vierkotten, Sarah; Lindner, Michael; Königshoff, Melanie; Eickelberg, Oliver

    2015-01-01

    During the last decades, the study of cell behavior was largely accomplished in uncoated or extracellular matrix (ECM)-coated plastic dishes. To date, considerable cell biological efforts have tried to model in vitro the natural microenvironment found in vivo. For the lung, explants cultured ex vivo as lung tissue cultures (LTCs) provide a three-dimensional (3D) tissue model containing all cells in their natural microenvironment. Techniques for assessing the dynamic live interaction between ECM and cellular tissue components, however, are still missing. Here, we describe specific multidimensional immunolabeling of living 3D-LTCs, derived from healthy and fibrotic mouse lungs, as well as patient-derived 3D-LTCs, and concomitant real-time four-dimensional multichannel imaging thereof. This approach allowed the evaluation of dynamic interactions between mesenchymal cells and macrophages with their ECM. Furthermore, fibroblasts transiently expressing focal adhesions markers incorporated into the 3D-LTCs, paving new ways for studying the dynamic interaction between cellular adhesions and their natural-derived ECM. A novel protein transfer technology (FuseIt/Ibidi) shuttled fluorescently labeled α-smooth muscle actin antibodies into the native cells of living 3D-LTCs, enabling live monitoring of α-smooth muscle actin-positive stress fibers in native tissue myofibroblasts residing in fibrotic lesions of 3D-LTCs. Finally, this technique can be applied to healthy and diseased human lung tissue, as well as to adherent cells in conventional two-dimensional cell culture. This novel method will provide valuable new insights into the dynamics of ECM (patho)biology, studying in detail the interaction between ECM and cellular tissue components in their natural microenvironment. PMID:26092995

  10. Effects of Initial Abstinence and Programmed Lapses on the Relative Reinforcing Effects of Cigarette Smoking

    ERIC Educational Resources Information Center

    Chivers, Laura L.; Higgins, Stephen T.; Heil, Sarah H.; Proskin, Rebecca W.; Thomas, Colleen S.

    2008-01-01

    Fifty-eight smokers received abstinence-contingent monetary payments for 1 (n = 15) or 14 (n = 43) days. Those who received contingent payments for 14 days also received 0, 1, or 8 experimenter-delivered cigarette puffs on 5 evenings. The relative reinforcing effects of smoking were assessed in a 3-hr session on the final study day, when…

  11. Performance Lapses in Children with Attention-Deficit/Hyperactivity Disorder Contribute to Poor Reading Fluency

    PubMed Central

    Jacobson, Lisa A.; Ryan, Matthew; Denckla, Martha B.; Mostofsky, Stewart H.; Mahone, E. Mark

    2013-01-01

    Children with Attention-Deficit/Hyperactivity Disorder (ADHD) demonstrate increased response variability compared with controls, which is thought to be associated with deficits in attention regulation and response control that subsequently affect performance of more cognitively demanding tasks, such as reading. The present study examined response variability during a computerized simple reaction time (RT) task in 67 children. Ex-Gaussian analyses separated the response time distribution into normal (mu and sigma) and exponential (tau) components; the association of each with reading fluency was examined. Children with ADHD had significantly slower, more variable, and more skewed RTs compared with controls. After controlling for ADHD symptom severity, tau (but not mu or mean RT) was significantly associated with reduced reading fluency, but not with single word reading accuracy. These data support the growing evidence that RT variability, but not simply slower mean response speed, is the characteristic of youth with ADHD and that longer response time latencies (tau) may be implicated in the poorer academic performance associated with ADHD. PMID:23838684

  12. Time-lapse seismic study of levees in southern New Mexico

    USGS Publications Warehouse

    Ivanov, J.; Miller, R.D.; Stimac, N.; Ballard, R.F.; Dunbar, J. Joseph; Smullen, S. Steve

    2006-01-01

    The primary objective of this work was to measure changes in compressional- (Vp) and shear-wave (Vs) velocities in an earthen levee during a ponding experiment designed to simulate flood conditions on the Rio Grande in south New Mexico. Although similar to such experiment, performed an year earlier on the Rio Grande in south Texas, the levee seismic response results are different. This work was similar to previous Preliminary testing at three levee sites, all within a 1 km radius and each with unique physical, EM, and core characteristics, was completed and a single low-conductivity, highly fractured site was selected for investigation. Several different types of seismic data were recorded. Seismic data analysis techniques appraised included P-refraction tomography and Rayleigh surface-wave analysis using multichannel analysis of surface waves (MASW). P-wave velocity change (decrease) was rapid and isolated to one section within the pool confines, which already had anomalously high velocity most likely related to burrowing animals modification of the levee structure. S-wave velocity change was gradual and could be observed along the whole width of the pond within and below the levee. The results within the levee sand core were consistent with the observations of sand S-wave velocity changed due to saturation. ?? 2005 Society of Exploration Geophysicists.

  13. 78 FR 29436 - Proposed Information Collection (Application for Reinstatement (Insurance Lapsed More Than 6...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-20

    ... solicits comments for information needed to reinstate a claimant's Government Life Insurance and/or Total...), Government Life Insurance and/or Total Disability Income Provision, VA Form 29-352, and Application for Reinstatement (Non Medical--Comparative Health Statement), Government Life Insurance, VA Form 29-353....

  14. 75 FR 68037 - Proposed Information Collection (Application for Reinstatement (Insurance Lapsed More Than 6...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-04

    ... solicits comments for information needed to reinstate a claimant's Government Life Insurance and/or Total...), Government Life Insurance and/or Total Disability Income Provision, VA Form 29-352, and Application for Reinstatement (Non Medical--Comparative Health Statement), Government Life Insurance, VA Form 29-353....

  15. 75 FR 52066 - Proposed Information Collection (Application for Reinstatement (Insurance Lapsed More than 6...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-08-24

    ... solicits comments for information needed to reinstate a claimant's Government Life Insurance and/or Total...), Government Life Insurance and/or Total Disability Income Provision, VA Form 29-352, and Application for Reinstatement (Non Medical--Comparative Health Statement), Government Life Insurance, VA Form 29-353....

  16. Time-lapse contact microscopy of cell cultures based on non-coherent illumination

    NASA Astrophysics Data System (ADS)

    Gabriel, Marion; Balle, Dorothée; Bigault, Stéphanie; Pornin, Cyrille; Gétin, Stéphane; Perraut, François; Block, Marc R.; Chatelain, François; Picollet-D'Hahan, Nathalie; Gidrol, Xavier; Haguet, Vincent

    2015-10-01

    Video microscopy offers outstanding capabilities to investigate the dynamics of biological and pathological mechanisms in optimal culture conditions. Contact imaging is one of the simplest imaging architectures to digitally record images of cells due to the absence of any objective between the sample and the image sensor. However, in the framework of in-line holography, other optical components, e.g., an optical filter or a pinhole, are placed underneath the light source in order to illuminate the cells with a coherent or quasi-coherent incident light. In this study, we demonstrate that contact imaging with an incident light of both limited temporal and spatial coherences can be achieved with sufficiently high quality for most applications in cell biology, including monitoring of cell sedimentation, rolling, adhesion, spreading, proliferation, motility, death and detachment. Patterns of cells were recorded at various distances between 0 and 1000 μm from the pixel array of the image sensors. Cells in suspension, just deposited or at mitosis focalise light into photonic nanojets which can be visualised by contact imaging. Light refraction by cells significantly varies during the adhesion process, the cell cycle and among the cell population in connection with every modification in the tridimensional morphology of a cell.

  17. In situ visualization of magma deformation at high temperature using time-lapse 3D tomography

    NASA Astrophysics Data System (ADS)

    Godinho, jose; Lee, Peter; Lavallee, Yan; Kendrick, Jackie; Von-Aulock, Felix

    2016-04-01

    We use synchrotron based x-ray computed micro-tomography (sCT) to visualize, in situ, the microstructural evolution of magma samples 3 mm diameter with a resolution of 3 μm during heating and uniaxial compression at temperatures up to 1040 °C. The interaction between crystals, melt and gas bubbles is analysed in 4D (3D + time) during sample deformation. The ability to observe the changes of the microstructure as a function of time allow us to: a) study the effect of temperature in the ability of magma to fracture or deform; b) quantify bubble nucleation and growth rates during heating; c) study the relation between crystal displacement and volatile exsolution. We will show unique beautiful videos of how bubbles grow and coalescence, how samples and crystals within the sample fracture, heal and deform. Our study establishes in situ sCT as a powerful tool to quantify and visualize with micro-scale resolution fast processes taking place in magma that are essential to understand ascent in a volcanic conduit and validate existing models for determining the explosivity of volcanic eruptions. Tracking simultaneously the time and spatial changes of magma microstructures is shown to be primordial to study disequilibrium processes between crystals, melt and gas phases.

  18. Time-Lapse Geoelectrical Imaging of a Controlled Ethanol Release in Ottawa Sand

    NASA Astrophysics Data System (ADS)

    Henderson, R.; Glaser, D. R.; Johnson, T. C.; Werkema, D. D.; Versteeg, R. J.; Lane, J. W.

    2010-12-01

    Ethanol is now widely used in petrochemical-based fuels as a fuel oxygenate, or as the primary ingredient in E85 gasoline. Increased production and use of ethanol resulted from environmental concerns over methyl-tertiary-butyl-ether (MTBE), a toxic water-soluble gasoline additive, and the need for renewable sources of non-petrochemical equivalents. Although replacement of MTBE by ethanol is driven by environmental concerns, ethanol itself poses problems if released into the subsurface. Subsurface releases of significant quantities of ethanol may initially reduce microbial populations, mobilize pre-existing subsurface contamination in soil and groundwater, and potentially form explosive conditions through methanogenesis; hence, there is a growing need for rapid assessment of subsurface releases to allow for expedited remedial action. Surface and borehole geophysical methods are capable of providing rapid results to assess the extent of a release; little work, however, has been done to understand the geoelectrical signature of ethanol in the subsurface. Here, we use a cross-borehole electrode array to monitor the three-dimensional (3D) geoelectrical response of a controlled ethanol injection into a closed hydrologic tank model initially containing Ottawa sand and tap water. During the course of the ethanol injection, full geoelectrical data sets were collected at approximately 40-min intervals. Inversion was carried out with a 3D parallel inverse modeling algorithm. In all, 14 3D images show the evolution of the ethanol distribution in the tank during and immediately following the injection of ethanol. Results suggest that geoelectrical field measurements would be useful to delineate and monitor an ethanol release.

  19. Time-lapse monitoring of soil water content using electromagnetic conductivity imaging

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The volumetric soil water content (VWC) is fundamental to agriculture. Unfortunately, the universally accepted thermogravimetric method is labour intensive and time-consuming to use for field-scale monitoring. Electromagnetic (EM) induction instruments have proven to be useful in mapping the spatio-...

  20. Numerical modeling of time-lapse monitoring of CO2 sequestration in a layered basalt reservoir

    USGS Publications Warehouse

    Khatiwada, M.; Van Wijk, K.; Clement, W.P.; Haney, M.

    2008-01-01

    As part of preparations in plans by The Big Sky Carbon Sequestration Partnership (BSCSP) to inject CO2 in layered basalt, we numerically investigate seismic methods as a noninvasive monitoring technique. Basalt seems to have geochemical advantages as a reservoir for CO2 storage (CO2 mineralizes quite rapidly while exposed to basalt), but poses a considerable challenge in term of seismic monitoring: strong scattering from the layering of the basalt complicates surface seismic imaging. We perform numerical tests using the Spectral Element Method (SEM) to identify possibilities and limitations of seismic monitoring of CO2 sequestration in a basalt reservoir. While surface seismic is unlikely to detect small physical changes in the reservoir due to the injection of CO2, the results from Vertical Seismic Profiling (VSP) simulations are encouraging. As a perturbation, we make a 5%; change in wave velocity, which produces significant changes in VSP images of pre-injection and post-injection conditions. Finally, we perform an analysis using Coda Wave Interferometry (CWI), to quantify these changes in the reservoir properties due to CO2 injection.

  1. A drug-induced accelerated senescence (DIAS) is a possibility to study aging in time lapse.

    PubMed

    Alili, Lirija; Diekmann, Johanna; Giesen, Melanie; Holtkötter, Olaf; Brenneisen, Peter

    2014-06-01

    Currently, the oxidative stress (or free radical) theory of aging is the most popular explanation of how aging occurs at the molecular level. Accordingly, a stress-induced senescence-like phenotype of human dermal fibroblasts can be induced in vitro by the exposure of human diploid fibroblasts to subcytotoxic concentrations of hydrogen peroxide. However, several biomarkers of replicative senescence e.g. cell cycle arrest and enlarged morphology are abrogated 14 days after treatment, indicating that reactive oxygen species (ROS) rather acts as a trigger for short-term senescence (1-3 days) than being responsible for the maintenance of the senescence-like phenotype. Further, DNA-damaging factors are discussed resulting in a permanent senescent cell type. To induce long-term premature senescence and to understand the molecular alterations occurring during the aging process, we analyzed mitomycin C (MMC) as an alkylating DNA-damaging agent and ROS producer. Human dermal fibroblasts (HDF), used as model for skin aging, were exposed to non-cytotoxic concentrations of MMC and analyzed for potential markers of cellular aging, for example enlarged morphology, activity of senescence-associated-ß-galactosidase, cell cycle arrest, increased ROS production and MMP1-activity, which are well-documented for HDF in replicative senescence. Our data show that mitomycin C treatment results in a drug-induced accelerated senescence (DIAS) with long-term expression of senescence markers, demonstrating that a combination of different susceptibility factors, here ROS and DNA alkylation, are necessary to induce a permanent senescent cell type.

  2. Imaging hydrological processes in headwater riparian seeps with time-lapse electrical resistivity

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The activation of subsurface seepage in response to precipitation events represents a potentially important pathway of nitrogen (N) delivery to streams in agricultural catchments. We used electrical resistivity imaging (ERI) and shallow piezometers to elucidate how seep and non-seep areas within the...

  3. A Time-Lapse Movie of the Kinematics Across the Carina Nebula with ACS

    NASA Astrophysics Data System (ADS)

    Smith, Nathan

    2014-10-01

    In HST cycles 13 and 14, we conducted an ACS H-alpha imaging survey of the Carina Nebula that covered 540 square arcminutes, concentrating on the two 2-3 Myr old central massive star clusters and several surrounding regions with propagating massive star formation. Now we aim to duplicate our previous program with the same filter and instrument in order to measure proper motions over a 9-10 year time baseline. These observations have two chief goals: (1) We will measure proper motions of the 40 jets discovered in our previous survey (anything moving faster than the sound speed in ionized gas), in order to measure their ages and transverse velocities, plus motions of a number of prominent shock structures. Combining the proper motions with spectra will reveal their true 3D kinematics and mass-loss histories. (2) We will measure the proper motions of all stellar point sources with luminosities above roughly 1 Msun and transverse motion faster than about 3 km/s. Combining this with ground-based spectra (mostly for O, B, and A stars) will provide a 3D kinematic map of the stars over a range of initial masses. This will easily identify any runaway massive stars, but will also track the slower collective motion of sub-clusters. Because Carina is at only 2.3 kpc, this will yield the most complete census of global stellar kinematics in a massive OB association - in one which is caught at such a young age that the "cluster of clusters" still bears the kinematic imprint of propagating star formation. The detailed kinematics will allow the first definitive test of whether the distributed generations of stars were actually triggered by the feedback from the central clusters.

  4. A Time-Lapse Movie of the Kinematics Across the Carina Nebula with ACS

    NASA Astrophysics Data System (ADS)

    Smith, Nathan

    2013-10-01

    In HST cycles 13 and 14, we conducted an ACS H-alpha imaging survey of the Carina Nebula that covered 540 square arcminutes, concentrating on the two 2-3 Myr old central massive star clusters and several surrounding regions with propagating massive star formation. Now we aim to duplicate our previous program with the same filter and instrument in order to measure proper motions over a 9-10 year time baseline. These observations have two chief goals: {1} We will measure proper motions of the 40 jets discovered in our previous survey {anything moving faster than the sound speed in ionized gas}, in order to measure their ages and transverse velocities, plus motions of a number of prominent shock structures. Combining the proper motions with spectra will reveal their true 3D kinematics and mass-loss histories. {2} We will measure the proper motions of all stellar point sources with luminosities above roughly 1 Msun and transverse motion faster than about 3 km/s. Combining this with ground-based spectra {mostly for O, B, and A stars} will provide a 3D kinematic map of the stars over a range of initial masses. This will easily identify any runaway massive stars, but will also track the slower collective motion of sub-clusters. Because Carina is at only 2.3 kpc, this will yield the most complete census of global stellar kinematics in a massive OB association - in one which is caught at such a young age that the "cluster of clusters" still bears the kinematic imprint of propagating star formation. The detailed kinematics will allow the first definitive test of whether the distributed generations of stars were actually triggered by the feedback from the central clusters.

  5. Monitoring spatial and temporal variations of permeability in constructed wetlands by time-lapse geophysical methods

    NASA Astrophysics Data System (ADS)

    Tapias, J. C.; Himi, M.; Lovera, R.; Blasco, R.; Folch, M.; Casas, A.

    2012-04-01

    Constructed wetlands are widely used for removing pollutants from wastewater in small communities because their simplicity and low operation costs. Nevertheless, with time the cleaning process can result in gradual clogging of the porous layer by suspended solids, bacterial film, chemical precipitates and compactation. The clogging development causes decrease of hydraulic conductivity, reduced oxygen supply and further leads to a rapid decrease of the treatment performance. As the investment involved in reversing clogging can represent a substantial fraction of the cost of a new system it is essential to assess in advance the evolution of clogging process and detect potential failures in the system. Since there is a lack of experiences for monitoring the functionality of constructed wedlands a combination of non-destructive geophysical methods have been tested in this study. With this purpose electrical resistivity tomography, induced polarisation, frequency domain EM and ground probing radar have been conducted at different horizontal subsurface flow municipal wastewater treatment wetlands of Catalonia (Spain). The obtained results have shown that the applied geophysical techniques may delineate the clogging expansion and help take the preventive measures for enlarge the lifetime of the treatment system.

  6. Inspection of earthen embankment dams using time lapse electrical resistivity tomography

    NASA Astrophysics Data System (ADS)

    Case, Jared S.

    According to the National Inventory of Dams (NID), the number of dams across the United States is approximately 85,000. Many of these dams are more than 50 years old and need vast attention to ensure their safety. It is difficult to obtain a full assessment of the dam just by visual inspections alone. This is because many problems associated with dam failure occur internally, which makes it difficult to be observed by the dam inspectors. Examples of these flaws are piping and seepage (flow of water through or around dam walls). It is in this area where geophysical methods can aid in obtaining a more confident evaluation of a dam's integrity. Electrical resistivity is one geophysical technique that would be useful in detecting internal flaws associated with seepage and piping because it is sensitive to moisture changes. A study is being conducted to examine the feasibility of electrical resistivity tomography (ERT) to map and monitor internal compromised zones within earthen embankment dams. Two quarter-scaled earthen embankment dams were built at the United States Department of Agriculture (USDA) Agriculture Research Service (ARS) Hydraulics and Engineering Research Unit (HERU) in Stillwater, Oklahoma. These two dams were constructed with known internal compromised zones that are susceptible to seepage and piping. Electrical resistivity surveys were conducted on the completed dams using a 56 electrode dipole-dipole array. The collected data was then processed using electrical resistivity tomography (ERT) imaging software and evidence of these two compromised zones was easily visible. Also, additional surveys were conducted in order to monitor the changes in electrical signatures associated with changes in these zones due to filling of the reservoir and environmental/climate changes.

  7. In toto imaging of embryogenesis with confocal time-lapse microscopy.

    PubMed

    Megason, Sean G

    2009-01-01

    Microscopy has been one of the most direct and powerful tools since the beginning of biological research. Continued advances such as confocal and two-photon fluorescence microscopy and fluorescent proteins now make imaging useful at a variety of spatial scales (molecules, circuits, cells, tissues, and even whole embryos) and temporal scales (

  8. Noninvasive quantitative measurement of colloid transport in mesoscale porous media using time lapse fluorescence imaging.

    PubMed

    Bridge, Jonathan W; Banwart, Steven A; Heathwaite, A Louise

    2006-10-01

    We demonstrate noninvasive quantitative imaging of colloid and solute transport at millimeter to decimeter (meso-) scale. Ultraviolet (UV) excited fluorescent solute and colloid tracers were independently measured simultaneously during co-advection through saturated quartz sand. Pulse-input experiments were conducted at constant flow rates and ionic strengths 10(-3), 10(-2) and 10(-1) M NaCl. Tracers were 1.9 microm carboxylate latex microspheres and disodium fluorescein. Spatial moments analysis was used to quantify relative changes in mass distribution of the colloid and solute tracers over time. The solute advected through the sand at a constant velocity proportional to flow rate and was described well by a conservative transport model (CXTFIT). In unfavorable deposition conditions increasing ionic strength produced significant reduction in colloid center of mass transport velocity over time. Velocity trends correlated with the increasing fraction of colloid mass retained along the flowpath. Attachment efficiencies (defined by colloid filtration theory) calculated from nondestructive retained mass data were 0.013 +/- 0.03, 0.09 +/- 0.02, and 0.22 +/- 0.05 at 10(-3), 10(-2), and 10(-1) M ionic strength, respectively, which compared well with previously published data from breakthrough curves and destructive sampling. Mesoscale imaging of colloid mass dynamics can quantify key deposition and transport parameters based on noninvasive, nondestructive, spatially high-resolution data.

  9. Investigating hydrological contributions to volcano monitoring signals. A time-lapse gravity example.

    NASA Astrophysics Data System (ADS)

    Hemmings, B.; Gottsmann, J.; Whitaker, F.; Coco, A.

    2016-07-01

    Geophysical techniques are widely used to monitor volcanic unrest. A number of studies have also demonstrated that hydrological processes can produce or trigger geophysical signals. Hydrologically-induced gravity signals have previously been recorded by specifically designed gravity surveys as well as, inadvertently, by volcano monitoring studies. Water table corrections of microgravity surveys are commonplace. However, the fluctuations of the water table beneath survey locations are often poorly known, and such a correction fails to account of changes in water-mass storage in the unsaturated zone. Here, we combine 2D axis-symmetrical numerical fluid-flow models with an axis-symmetric, distributed-mass, gravity calculation to model gravity changes in response to fluctuating hydrological recharge. Flow simulations are based on tropical volcanic settings where high surface permeabilities promote thick unsaturated zones. Our study highlights that mass storage (saturation) changes within the unsaturated zone beneath a survey point can generate recordable gravity changes. We show that for a tropical climate, recharge variations can generate gravity variations of over 150 μGal; although, we demonstrate that for the scenarios investigated here, the probability of recording such large signals, is low. Our modelling results indicate that microgravity survey corrections based on water table elevation may result in errors of up to 100 μGal. The effect of inter-annual recharge fluctuations dominate over seasonal cycles which makes prediction and correction of the hydrological contribution more difficult. Spatial hydrogeological heterogeneity can also impact on the accuracy of relative gravity surveys, and can even result in the introduction of additional survey errors. The loading fluctuations associated with saturation variations in the unsaturated zone may also have implications for other geophysical monitoring techniques, such as geodetic monitoring of ground deformation.

  10. 26 CFR 1.83-5 - Restrictions that will never lapse.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... determined under the formula price will be considered to be the fair market value of the property unless... transferee to sell such stock only at a formula price based on book value, a reasonable multiple of earnings... circumstances the formula price will not be considered to be the fair market value of property subject to such...

  11. 26 CFR 1.83-5 - Restrictions that will never lapse.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... determined under the formula price will be considered to be the fair market value of the property unless... transferee to sell such stock only at a formula price based on book value, a reasonable multiple of earnings... circumstances the formula price will not be considered to be the fair market value of property subject to such...

  12. Using Long-Term Time-Lapse Imaging of Mammalian Cell Cycle Progression for Laboratory Instruction and Analysis

    ERIC Educational Resources Information Center

    Hinchcliffe, Edward H.

    2005-01-01

    Cinemicrography--the capture of moving cellular sequences through the microscope--has been influential in revealing the dynamic nature of cellular behavior. One of the more dramatic cellular events is mitosis, the division of sister chromatids into two daughter cells. Mitosis has been extensively studied in a variety of organisms, both…

  13. Generation and characterization of iUBC-KikGR photoconvertible transgenic mice for live time lapse imaging during development

    PubMed Central

    Griswold, Shannon L.; Sajja, Krishna C.; Jang, Chuan-Wei

    2012-01-01

    Summary A transgenic mouse line named iUBC-KikGR was generated which expresses the photoconvertible fluorescent protein Kikume Green-Red (KikGR) under the control of the human Ubiquitin C promoter. KikGR is natively a green fluorophore which can be converted into a red fluorophore upon exposure to UV light. KikGR is expressed broadly throughout transgenic embryos from the 2-cell stage onward, and in the adult. Specificity of photoconversion can range from the entire embryo, to a region of an organ, to a few individual cells, depending on the needs of the experimenter. Cell movements, tissue reorganization, and migration can then be observed in real time by culturing the tissue of interest as an explant on the microscope stage. The iUBC-KikGR transgenic line represents a singular genetic reagent which can be used for fate mapping, lineage tracing, and live visualization of cell behaviors and tissue movements in multiple organs at multiple time points. PMID:21309067

  14. HLYWD: a program for post-processing data files to generate selected plots or time-lapse graphics

    SciTech Connect

    Munro, J.K. Jr.

    1980-05-01

    The program HLYWD is a post-processor of output files generated by large plasma simulation computations or of data files containing a time sequence of plasma diagnostics. It is intended to be used in a production mode for either type of application; i.e., it allows one to generate along with the graphics sequence, segments containing title, credits to those who performed the work, text to describe the graphics, and acknowledgement of funding agency. The current version is designed to generate 3D plots and allows one to select type of display (linear or semi-log scales), choice of normalization of function values for display purposes, viewing perspective, and an option to allow continuous rotations of surfaces. This program was developed with the intention of being relatively easy to use, reasonably flexible, and requiring a minimum investment of the user's time. It uses the TV80 library of graphics software and ORDERLIB system software on the CDC 7600 at the National Magnetic Fusion Energy Computing Center at Lawrence Livermore Laboratory in California.

  15. Cell segmentation in time-lapse fluorescence microscopy with temporally varying sub-cellular fusion protein patterns.

    PubMed

    Bunyak, Filiz; Palaniappan, Kannappan; Chagin, Vadim; Cardoso, M

    2009-01-01

    Fluorescently tagged proteins such as GFP-PCNA produce rich dynamically varying textural patterns of foci distributed in the nucleus. This enables the behavioral study of sub-cellular structures during different phases of the cell cycle. The varying punctuate patterns of fluorescence, drastic changes in SNR, shape and position during mitosis and abundance of touching cells, however, require more sophisticated algorithms for reliable automatic cell segmentation and lineage analysis. Since the cell nuclei are non-uniform in appearance, a distribution-based modeling of foreground classes is essential. The recently proposed graph partitioning active contours (GPAC) algorithm supports region descriptors and flexible distance metrics. We extend GPAC for fluorescence-based cell segmentation using regional density functions and dramatically improve its efficiency for segmentation from O(N(4)) to O(N(2)), for an image with N(2) pixels, making it practical and scalable for high throughput microscopy