ScintSim1: A new Monte Carlo simulation code for transport of optical photons in 2D arrays of scintillation detectors.

PubMed

Mosleh-Shirazi, Mohammad Amin; Zarrini-Monfared, Zinat; Karbasi, Sareh; Zamani, Ali

2014-01-01

Two-dimensional (2D) arrays of thick segmented scintillators are of interest as X-ray detectors for both 2D and 3D image-guided radiotherapy (IGRT). Their detection process involves ionizing radiation energy deposition followed by production and transport of optical photons. Only a very limited number of optical Monte Carlo simulation models exist, which has limited the number of modeling studies that have considered both stages of the detection process. We present ScintSim1, an in-house optical Monte Carlo simulation code for 2D arrays of scintillation crystals, developed in the MATLAB programming environment. The code was rewritten and revised based on an existing program for single-element detectors, with the additional capability to model 2D arrays of elements with configurable dimensions, material, etc., The code generates and follows each optical photon history through the detector element (and, in case of cross-talk, the surrounding ones) until it reaches a configurable receptor, or is attenuated. The new model was verified by testing against relevant theoretically known behaviors or quantities and the results of a validated single-element model. For both sets of comparisons, the discrepancies in the calculated quantities were all <1%. The results validate the accuracy of the new code, which is a useful tool in scintillation detector optimization.

Numerical studies and metric development for validation of magnetohydrodynamic models on the HIT-SI experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hansen, C., E-mail: hansec@uw.edu; Columbia University, New York, New York 10027; Victor, B.

We present application of three scalar metrics derived from the Biorthogonal Decomposition (BD) technique to evaluate the level of agreement between macroscopic plasma dynamics in different data sets. BD decomposes large data sets, as produced by distributed diagnostic arrays, into principal mode structures without assumptions on spatial or temporal structure. These metrics have been applied to validation of the Hall-MHD model using experimental data from the Helicity Injected Torus with Steady Inductive helicity injection experiment. Each metric provides a measure of correlation between mode structures extracted from experimental data and simulations for an array of 192 surface-mounted magnetic probes. Numericalmore » validation studies have been performed using the NIMROD code, where the injectors are modeled as boundary conditions on the flux conserver, and the PSI-TET code, where the entire plasma volume is treated. Initial results from a comprehensive validation study of high performance operation with different injector frequencies are presented, illustrating application of the BD method. Using a simplified (constant, uniform density and temperature) Hall-MHD model, simulation results agree with experimental observation for two of the three defined metrics when the injectors are driven with a frequency of 14.5 kHz.« less

Analysis of Wave Predictions from the Coastal Model Test Bed using Operationally Estimated Bathymetry

NASA Astrophysics Data System (ADS)

Bak, S.; Smith, J. M.; Hesser, T.; Bryant, M. A.

2016-12-01

Near-coast wave models are generally validated with relatively small data sets that focus on analytical solutions, specialized experiments, or intense storms. Prior studies have compiled testbeds that include a few dozen experiments or storms to validate models (e.g., Ris et al. 2002), but few examples exist that allow for continued model evaluation in the nearshore and surf-zone in near-realtime. The limited nature of these validation sets is driven by a lack of high spatial and temporal resolution in-situ wave measurements and the difficulty in maintaining these instruments on the active profile over long periods of time. The US Army Corps of Engineers Field Research Facility (FRF) has initiated a Coastal Model Test-Bed (CMTB), which is an automated system that continually validates wave models (with morphological and circulation models to follow) utilizing the rich data set of oceanographic and bathymetric measurements collected at the FRF. The FRF's cross-shore wave array provides wave measurements along a cross-shore profile from 26 m of water depth to the shoreline, utilizing various instruments including wave-rider buoys, AWACs, aquadopps, pressure gauges, and a dune-mounted lidar (Brodie et al. 2015). This work uses the CMTB to evaluate the performance of a phase-averaged numerical wave model, STWAVE (Smith 2007, Massey et al. 2011) over the course of a year at the FRF in Duck, NC. Additionally, from the BathyDuck Experiment in October 2015, the CMTB was used to determine the impact of applying the depth boundary condition for the model from monthly acoustic bathymetric surveys in comparison to hourly estimates using a video-based inversion method (e.g., cBathy, Holman et al. 2013). The modeled wave parameters using both bathymetric boundary conditions are evaluated using the FRF's cross-shore wave array and two additional cross-shore arrays of wave measurements in 2 to 4 m water depth from BathyDuck in Fall, 2015.

Deployment dynamics and control of large-scale flexible solar array system with deployable mast

NASA Astrophysics Data System (ADS)

Li, Hai-Quan; Liu, Xiao-Feng; Guo, Shao-Jing; Cai, Guo-Ping

2016-10-01

In this paper, deployment dynamics and control of large-scale flexible solar array system with deployable mast are investigated. The adopted solar array system is introduced firstly, including system configuration, deployable mast and solar arrays with several mechanisms. Then dynamic equation of the solar array system is established by the Jourdain velocity variation principle and a method for dynamics with topology changes is introduced. In addition, a PD controller with disturbance estimation is designed to eliminate the drift of spacecraft mainbody. Finally the validity of the dynamic model is verified through a comparison with ADAMS software and the deployment process and dynamic behavior of the system are studied in detail. Simulation results indicate that the proposed model is effective to describe the deployment dynamics of the large-scale flexible solar arrays and the proposed controller is practical to eliminate the drift of spacecraft mainbody.

Modeling and Simulation of Ceramic Arrays to Improve Ballaistic Performance

DTIC Science & Technology

2013-10-01

are modeled using SPH elements. Model validation runs with monolithic SiC tiles are conducted based on the DoP experiments described in reference...TERMS ,30cal AP M2 Projectile, 762x39 PS Projectile, SPH , Aluminum 5083, SiC, DoP Expeminets, AutoDyn Simulations, Tile Gap 16. SECURITY...range 700 m/s to 1000 m/s are modeled using SPH elements. □ Model validation runs with monolithic SiC tiles are conducted based on the DoP

Utilization of UARS Data in Validation of Photochemical and Dynamical Mechanism in Stratospheric Models

NASA Technical Reports Server (NTRS)

Rodriquez, Jose M.; Hu, Wenjie; Ko, Malcolm K.W.

1996-01-01

The global three-dimensional measurement of long- and short-lived species from Upper Atmospheric Research Satellite (UARS) provides a unique opportunity to validate chemistry and dynamics mechanisms in the middle atmosphere. During the past three months, we focused on expanding our study of data-model comparisons to whole time periods when Cryogenic Limb Array Etalon Spectrometer (CLAES) instrument were operating.

Directivity of a Sparse Array in the Presence of Atmospheric-Induced Phase Fluctuations for Deep Space Communications

NASA Technical Reports Server (NTRS)

Nessel, James A.; Acosta, Robert J.

2010-01-01

Widely distributed (sparse) ground-based arrays have been utilized for decades in the radio science community for imaging celestial objects, but have only recently become an option for deep space communications applications with the advent of the proposed Next Generation Deep Space Network (DSN) array. But whereas in astronomical imaging, observations (receive-mode only) are made on the order of minutes to hours and atmospheric-induced aberrations can be mostly corrected for in post-processing, communications applications require transmit capabilities and real-time corrections over time scales as short as fractions of a second. This presents an unavoidable problem with the use of sparse arrays for deep space communications at Ka-band which has yet to be successfully resolved, particularly for uplink arraying. In this paper, an analysis of the performance of a sparse antenna array, in terms of its directivity, is performed to derive a closed form solution to the expected array loss in the presence of atmospheric-induced phase fluctuations. The theoretical derivation for array directivity degradation is validated with interferometric measurements for a two-element array taken at Goldstone, California. With the validity of the model established, an arbitrary 27-element array geometry is defined at Goldstone, California, to ascertain its performance in the presence of phase fluctuations. It is concluded that a combination of compact array geometry and atmospheric compensation is necessary to ensure high levels of availability.

Improved Phased Array Imaging of a Model Jet

NASA Technical Reports Server (NTRS)

Dougherty, Robert P.; Podboy, Gary G.

2010-01-01

An advanced phased array system, OptiNav Array 48, and a new deconvolution algorithm, TIDY, have been used to make octave band images of supersonic and subsonic jet noise produced by the NASA Glenn Small Hot Jet Acoustic Rig (SHJAR). The results are much more detailed than previous jet noise images. Shock cell structures and the production of screech in an underexpanded supersonic jet are observed directly. Some trends are similar to observations using spherical and elliptic mirrors that partially informed the two-source model of jet noise, but the radial distribution of high frequency noise near the nozzle appears to differ from expectations of this model. The beamforming approach has been validated by agreement between the integrated image results and the conventional microphone data.

Mutual coupling effects in antenna arrays, volume 1

NASA Technical Reports Server (NTRS)

Collin, R. E.

1986-01-01

Mutual coupling between rectangular apertures in a finite antenna array, in an infinite ground plane, is analyzed using the vector potential approach. The method of moments is used to solve the equations that result from setting the tangential magnetic fields across each aperture equal. The approximation uses a set of vector potential model functions to solve for equivalent magnetic currents. A computer program was written to carry out this analysis and the resulting currents were used to determine the co- and cross-polarized far zone radiation patterns. Numerical results for various arrays using several modes in the approximation are presented. Results for one and two aperture arrays are compared against published data to check on the agreement of this model with previous work. Computer derived results are also compared against experimental results to test the accuracy of the model. These tests of the accuracy of the program showed that it yields valid data.

Modeling needs for very large systems.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stein, Joshua S.

2010-10-01

Most system performance models assume a point measurement for irradiance and that, except for the impact of shading from nearby obstacles, incident irradiance is uniform across the array. Module temperature is also assumed to be uniform across the array. For small arrays and hourly-averaged simulations, this may be a reasonable assumption. Stein is conducting research to characterize variability in large systems and to develop models that can better accommodate large system factors. In large, multi-MW arrays, passing clouds may block sunlight from a portion of the array but never affect another portion. Figure 22 shows that two irradiance measurements atmore » opposite ends of a multi-MW PV plant appear to have similar irradiance (left), but in fact the irradiance is not always the same (right). Module temperature may also vary across the array, with modules on the edges being cooler because they have greater wind exposure. Large arrays will also have long wire runs and will be subject to associated losses. Soiling patterns may also vary, with modules closer to the source of soiling, such as an agricultural field, receiving more dust load. One of the primary concerns associated with this effort is how to work with integrators to gain access to better and more comprehensive data for model development and validation.« less

SAMICS Validation. SAMICS Support Study, Phase 3

NASA Technical Reports Server (NTRS)

1979-01-01

SAMICS provides a consistent basis for estimating array costs and compares production technology costs. A review and a validation of the SAMICS model are reported. The review had the following purposes: (1) to test the computational validity of the computer model by comparison with preliminary hand calculations based on conventional cost estimating techniques; (2) to review and improve the accuracy of the cost relationships being used by the model: and (3) to provide an independent verification to users of the model's value in decision making for allocation of research and developement funds and for investment in manufacturing capacity. It is concluded that the SAMICS model is a flexible, accurate, and useful tool for managerial decision making.

A multi-node model for transient heat transfer analysis of stratospheric airships

NASA Astrophysics Data System (ADS)

Alam, Mohammad Irfan; Pant, Rajkumar S.

2017-06-01

This paper describes a seven-node thermal model for transient heat transfer analysis of a solar powered stratospheric airship in floating condition. The solar array is modeled as a three node system, viz., outer layer, solar cell and substrate. The envelope is also modeled in three nodes, and the contained gas is considered as the seventh node. The heat transfer equations involving radiative, infra-red and conductive heat are solved simultaneously using a fourth order Runge-Kutta Method. The model can be used to study the effect of solar radiation, ambient wind, altitude and location of deployment of the airship on the temperature of the solar array. The model has been validated against some experimental data and numerical results quoted in literature. The effect of change in the value of some operational parameters on temperature of the solar array, and hence on its power output is also discussed.

Modeling and Simulation of Ceramic Arrays to Improve Ballaistic Performance

DTIC Science & Technology

2013-09-09

targets with .30cal AP M2 projectile using SPH elements. -Model validation runs were conducted based on the DoP experiments described in reference...effect of material properties on DoP 15. SUBJECT TERMS .30cal AP M2 Projectile, 762x39 PS Projectile, SPH , Aluminum 5083, SiC, DoP Expeminets...and ceramic-faced aluminum targets with „30cal AP M2 projectile using SPH elements. □ Model validation runs were conducted based on the DoP

Development and validation of a Housing First fidelity survey.

PubMed

Gilmer, Todd P; Stefancic, Ana; Sklar, Marisa; Tsemberis, Sam

2013-09-01

Programs that use the Housing First model are being implemented throughout the United States and internationally. The authors describe the development and validation of a Housing First fidelity survey. A 46-item survey was developed to measure fidelity across five domains: housing process and structure, separation of housing and services, service philosophy, service array, and team structure. The survey was administered to staff and clients of 93 supported-housing programs in California. Exploratory and confirmatory factor analyses were used to identify the items and model structure that best fit the data. Sixteen items were retained in a two-factor model, one related to approach to housing, separation of housing and services, and service philosophy and one related to service array and team structure. Our survey mapped program practices by using a common metric that captured variation in fidelity to Housing First across a large-scale implementation of supported-housing programs.

Numerical Simulations and Experimental Measurements of Scale-Model Horizontal Axis Hydrokinetic Turbines (HAHT) Arrays

NASA Astrophysics Data System (ADS)

Javaherchi, Teymour; Stelzenmuller, Nick; Seydel, Joseph; Aliseda, Alberto

2014-11-01

The performance, turbulent wake evolution and interaction of multiple Horizontal Axis Hydrokinetic Turbines (HAHT) is analyzed in a 45:1 scale model setup. We combine experimental measurements with different RANS-based computational simulations that model the turbines with sliding-mesh, rotating reference frame and blame element theory strategies. The influence of array spacing and Tip Speed Ratio on performance and wake velocity structure is investigated in three different array configurations: Two coaxial turbines at different downstream spacing (5d to 14d), Three coaxial turbines with 5d and 7d downstream spacing, and Three turbines with lateral offset (0.5d) and downstream spacing (5d & 7d). Comparison with experimental measurements provides insights into the dynamics of HAHT arrays, and by extension to closely packed HAWT arrays. The experimental validation process also highlights the influence of the closure model used (k- ω SST and k- ɛ) and the flow Reynolds number (Re=40,000 to 100,000) on the computational predictions of devices' performance and characteristics of the flow field inside the above-mentioned arrays, establishing the strengths and limitations of existing numerical models for use in industrially-relevant settings (computational cost and time). Supported by DOE through the National Northwest Marine Renewable Energy Center (NNMREC).

Analytical Model for Mean Flow and Fluxes of Momentum and Energy in Very Large Wind Farms

NASA Astrophysics Data System (ADS)

Markfort, Corey D.; Zhang, Wei; Porté-Agel, Fernando

2018-01-01

As wind-turbine arrays continue to be installed and the array size continues to grow, there is an increasing need to represent very large wind-turbine arrays in numerical weather prediction models, for wind-farm optimization, and for environmental assessment. We propose a simple analytical model for boundary-layer flow in fully-developed wind-turbine arrays, based on the concept of sparsely-obstructed shear flows. In describing the vertical distribution of the mean wind speed and shear stress within wind farms, our model estimates the mean kinetic energy harvested from the atmospheric boundary layer, and determines the partitioning between the wind power captured by the wind turbines and that absorbed by the underlying land or water. A length scale based on the turbine geometry, spacing, and performance characteristics, is able to estimate the asymptotic limit for the fully-developed flow through wind-turbine arrays, and thereby determine if the wind-farm flow is fully developed for very large turbine arrays. Our model is validated using data collected in controlled wind-tunnel experiments, and its usefulness for the prediction of wind-farm performance and optimization of turbine-array spacing are described. Our model may also be useful for assessing the extent to which the extraction of wind power affects the land-atmosphere coupling or air-water exchange of momentum, with implications for the transport of heat, moisture, trace gases such as carbon dioxide, methane, and nitrous oxide, and ecologically important oxygen.

A finite element-boundary integral method for cavities in a circular cylinder

NASA Technical Reports Server (NTRS)

Kempel, Leo C.; Volakis, John L.

1992-01-01

Conformal antenna arrays offer many cost and weight advantages over conventional antenna systems. However, due to a lack of rigorous mathematical models for conformal antenna arrays, antenna designers resort to measurement and planar antenna concepts for designing non-planar conformal antennas. Recently, we have found the finite element-boundary integral method to be very successful in modeling large planar arrays of arbitrary composition in a metallic plane. We extend this formulation to conformal arrays on large metallic cylinders. In this report, we develop the mathematical formulation. In particular, we discuss the shape functions, the resulting finite elements and the boundary integral equations, and the solution of the conformal finite element-boundary integral system. Some validation results are presented and we further show how this formulation can be applied with minimal computational and memory resources.

SEPARABLE FACTOR ANALYSIS WITH APPLICATIONS TO MORTALITY DATA

PubMed Central

Fosdick, Bailey K.; Hoff, Peter D.

2014-01-01

Human mortality data sets can be expressed as multiway data arrays, the dimensions of which correspond to categories by which mortality rates are reported, such as age, sex, country and year. Regression models for such data typically assume an independent error distribution or an error model that allows for dependence along at most one or two dimensions of the data array. However, failing to account for other dependencies can lead to inefficient estimates of regression parameters, inaccurate standard errors and poor predictions. An alternative to assuming independent errors is to allow for dependence along each dimension of the array using a separable covariance model. However, the number of parameters in this model increases rapidly with the dimensions of the array and, for many arrays, maximum likelihood estimates of the covariance parameters do not exist. In this paper, we propose a submodel of the separable covariance model that estimates the covariance matrix for each dimension as having factor analytic structure. This model can be viewed as an extension of factor analysis to array-valued data, as it uses a factor model to estimate the covariance along each dimension of the array. We discuss properties of this model as they relate to ordinary factor analysis, describe maximum likelihood and Bayesian estimation methods, and provide a likelihood ratio testing procedure for selecting the factor model ranks. We apply this methodology to the analysis of data from the Human Mortality Database, and show in a cross-validation experiment how it outperforms simpler methods. Additionally, we use this model to impute mortality rates for countries that have no mortality data for several years. Unlike other approaches, our methodology is able to estimate similarities between the mortality rates of countries, time periods and sexes, and use this information to assist with the imputations. PMID:25489353

Infrasound array criteria for automatic detection and front velocity estimation of snow avalanches: towards a real-time early-warning system

NASA Astrophysics Data System (ADS)

Marchetti, E.; Ripepe, M.; Ulivieri, G.; Kogelnig, A.

2015-11-01

Avalanche risk management is strongly related to the ability to identify and timely report the occurrence of snow avalanches. Infrasound has been applied to avalanche research and monitoring for the last 20 years but it never turned into an operational tool to identify clear signals related to avalanches. We present here a method based on the analysis of infrasound signals recorded by a small aperture array in Ischgl (Austria), which provides a significant improvement to overcome this limit. The method is based on array-derived wave parameters, such as back azimuth and apparent velocity. The method defines threshold criteria for automatic avalanche identification by considering avalanches as a moving source of infrasound. We validate the efficiency of the automatic infrasound detection with continuous observations with Doppler radar and we show how the velocity of a snow avalanche in any given path around the array can be efficiently derived. Our results indicate that a proper infrasound array analysis allows a robust, real-time, remote detection of snow avalanches that is able to provide the number and the time of occurrence of snow avalanches occurring all around the array, which represent key information for a proper validation of avalanche forecast models and risk management in a given area.

Analysis of mismatch and shading effects in a photovoltaic array using different technologies

NASA Astrophysics Data System (ADS)

Guerrero, J.; Muñoz, Y.; Ibáñez, F.; Ospino, A.

2014-06-01

In this paper, we analyze the performance of a photovoltaic array implemented in the Universidad Politécnica de Valencia which consists of modules of different technologies and power, connected in series, in order to quantify the energy losses due to mismatch and the effect of the shadows. To do this, the performance of the modules was measured in operation under ambient conditions with field measurement equipment (AMPROBE Solar Analyzer, Solar - 4000), which allows the extrapolation of measures to standard conditions STC. For the data validation, measures under controlled conditions were taken to some modules in the flash test laboratory of the Institute of Energy Technology ITE of Valencia in Spain. Subsequently the array curves measured were validated with a photovoltaic array model developed in MATLAB-Simulink for the same conditions and technologies. The results of this particular array are lost up to 20% of the energy supplied due to the modules mismatch. The study shows the curves and the energy loss due to shadows modules. This result opens scenarios for conceivable modifications to the PV field configurations today, chosen during the design stage and unchangeable during the operating stage; and gives greater importance to the energy loss by mismatch in the PV array.

Application of small-signal modeling and measurement techniques to the stability analysis of an integrated switching-mode power system. [onboard Dynamics Explorer Satellite

NASA Technical Reports Server (NTRS)

Wong, R. C.; Owen, H. A., Jr.; Wilson, T. G.; Rodriguez, G. E.

1980-01-01

Small-signal modeling techniques are used in a system stability analysis of a breadboard version of a complete functional electrical power system. The system consists of a regulated switching dc-to-dc converter, a solar-cell-array simulator, a solar-array EMI filter, battery chargers and linear shunt regulators. Loss mechanisms in the converter power stage, including switching-time effects in the semiconductor elements, are incorporated into the modeling procedure to provide an accurate representation of the system without requiring frequency-domain measurements to determine the damping factor. The small-signal system model is validated by the use of special measurement techniques which are adapted to the poor signal-to-noise ratio encountered in switching-mode systems. The complete electrical power system with the solar-array EMI filter is shown to be stable over the intended range of operation.

Target Tracking Using SePDAF under Ambiguous Angles for Distributed Array Radar.

PubMed

Long, Teng; Zhang, Honggang; Zeng, Tao; Chen, Xinliang; Liu, Quanhua; Zheng, Le

2016-09-09

Distributed array radar can improve radar detection capability and measurement accuracy. However, it will suffer cyclic ambiguity in its angle estimates according to the spatial Nyquist sampling theorem since the large sparse array is undersampling. Consequently, the state estimation accuracy and track validity probability degrades when the ambiguous angles are directly used for target tracking. This paper proposes a second probability data association filter (SePDAF)-based tracking method for distributed array radar. Firstly, the target motion model and radar measurement model is built. Secondly, the fusion result of each radar's estimation is employed to the extended Kalman filter (EKF) to finish the first filtering. Thirdly, taking this result as prior knowledge, and associating with the array-processed ambiguous angles, the SePDAF is applied to accomplish the second filtering, and then achieving a high accuracy and stable trajectory with relatively low computational complexity. Moreover, the azimuth filtering accuracy will be promoted dramatically and the position filtering accuracy will also improve. Finally, simulations illustrate the effectiveness of the proposed method.

Validation of International Space Station Electrical Performance Model via On-orbit Telemetry

NASA Technical Reports Server (NTRS)

Jannette, Anthony G.; Hojnicki, Jeffrey S.; McKissock, David B.; Fincannon, James; Kerslake, Thomas W.; Rodriguez, Carlos D.

2002-01-01

The first U.S. power module on International Space Station (ISS) was activated in December 2000. Comprised of solar arrays, nickel-hydrogen (NiH2) batteries, and a direct current power management and distribution (PMAD) system, the electric power system (EPS) supplies power to housekeeping and user electrical loads. Modeling EPS performance is needed for several reasons, but primarily to assess near-term planned and off-nominal operations and because the EPS configuration changes over the life of the ISS. The System Power Analysis for Capability Evaluation (SPACE) computer code is used to assess the ISS EPS performance. This paper describes the process of validating the SPACE EPS model via ISS on-orbit telemetry. To accomplish this goal, telemetry was first used to correct assumptions and component models in SPACE. Then on-orbit data was directly input to SPACE to facilitate comparing model predictions to telemetry. It will be shown that SPACE accurately predicts on-orbit component and system performance. For example, battery state-of-charge was predicted to within 0.6 percentage points over a 0 to 100 percent scale and solar array current was predicted to within a root mean square (RMS) error of 5.1 Amps out of a typical maximum of 220 Amps. First, SPACE model predictions are compared to telemetry for the ISS EPS components: solar arrays, NiH2 batteries, and the PMAD system. Second, SPACE predictions for the overall performance of the ISS EPS are compared to telemetry and again demonstrate model accuracy.

Modeling and optimization of atomic layer deposition processes on vertically aligned carbon nanotubes.

PubMed

Yazdani, Nuri; Chawla, Vipin; Edwards, Eve; Wood, Vanessa; Park, Hyung Gyu; Utke, Ivo

2014-01-01

Many energy conversion and storage devices exploit structured ceramics with large interfacial surface areas. Vertically aligned carbon nanotube (VACNT) arrays have emerged as possible scaffolds to support large surface area ceramic layers. However, obtaining conformal and uniform coatings of ceramics on structures with high aspect ratio morphologies is non-trivial, even with atomic layer deposition (ALD). Here we implement a diffusion model to investigate the effect of the ALD parameters on coating kinetics and use it to develop a guideline for achieving conformal and uniform thickness coatings throughout the depth of ultra-high aspect ratio structures. We validate the model predictions with experimental data from ALD coatings of VACNT arrays. However, the approach can be applied to predict film conformality as a function of depth for any porous topology, including nanopores and nanowire arrays.

A Phase Correction Technique Based on Spatial Movements of Antennas in Real-Time (S.M.A.R.T.) for Designing Self-Adapting Conformal Array Antennas

NASA Astrophysics Data System (ADS)

Roy, Sayan

This research presents a real-time adaptive phase correction technique for flexible phased array antennas on conformal surfaces of variable shapes. Previously reported pattern correctional methods for flexible phased array antennas require prior knowledge on the possible non-planar shapes in which the array may adapt for conformal applications. For the first time, this initial requirement of shape curvature knowledge is no longer needed and the instantaneous information on the relative location of array elements is used here for developing a geometrical model based on a set of Bezier curves. Specifically, by using an array of inclinometer sensors and an adaptive phase-correctional algorithm, it has been shown that the proposed geometrical model can successfully predict different conformal orientations of a 1-by-4 antenna array in real-time without the requirement of knowing the shape-changing characteristics of the surface the array is attached upon. Moreover, the phase correction technique is validated by determining the field patterns and broadside gain of the 1-by-4 antenna array on four different conformal surfaces with multiple points of curvatures. Throughout this work, measurements are shown to agree with the analytical solutions and full-wave simulations.

Interferometry with flexible point source array for measuring complex freeform surface and its design algorithm

NASA Astrophysics Data System (ADS)

Li, Jia; Shen, Hua; Zhu, Rihong; Gao, Jinming; Sun, Yue; Wang, Jinsong; Li, Bo

2018-06-01

The precision of the measurements of aspheric and freeform surfaces remains the primary factor restrict their manufacture and application. One effective means of measuring such surfaces involves using reference or probe beams with angle modulation, such as tilted-wave-interferometer (TWI). It is necessary to improve the measurement efficiency by obtaining the optimum point source array for different pieces before TWI measurements. For purpose of forming a point source array based on the gradients of different surfaces under test, we established a mathematical model describing the relationship between the point source array and the test surface. However, the optimal point sources are irregularly distributed. In order to achieve a flexible point source array according to the gradient of test surface, a novel interference setup using fiber array is proposed in which every point source can be independently controlled on and off. Simulations and the actual measurement examples of two different surfaces are given in this paper to verify the mathematical model. Finally, we performed an experiment of testing an off-axis ellipsoidal surface that proved the validity of the proposed interference system.

Variability-aware compact modeling and statistical circuit validation on SRAM test array

NASA Astrophysics Data System (ADS)

Qiao, Ying; Spanos, Costas J.

2016-03-01

Variability modeling at the compact transistor model level can enable statistically optimized designs in view of limitations imposed by the fabrication technology. In this work we propose a variability-aware compact model characterization methodology based on stepwise parameter selection. Transistor I-V measurements are obtained from bit transistor accessible SRAM test array fabricated using a collaborating foundry's 28nm FDSOI technology. Our in-house customized Monte Carlo simulation bench can incorporate these statistical compact models; and simulation results on SRAM writability performance are very close to measurements in distribution estimation. Our proposed statistical compact model parameter extraction methodology also has the potential of predicting non-Gaussian behavior in statistical circuit performances through mixtures of Gaussian distributions.

Implementation of a boundary element method to solve for the near field effects of an array of WECs

NASA Astrophysics Data System (ADS)

Oskamp, J. A.; Ozkan-Haller, H. T.

2010-12-01

When Wave Energy Converters (WECs) are installed, they affect the shoreline wave climate by removing some of the wave energy which would have reached the shore. Before large WEC projects are launched, it is important to understand the potential coastal impacts of these installations. The high cost associated with ocean scale testing invites the use of hydrodynamic models to play a major role in estimating these effects. In this study, a wave structure interaction program (WAMIT) is used to model an array of WECs. The program predicts the wave field throughout the array using a boundary element method to solve the potential flow fluid problem, taking into account the incident waves, the power dissipated, and the way each WEC moves and interacts with the others. This model is appropriate for a small domain near the WEC array in order to resolve the details in the interactions, but not extending to the coastline (where the far-field effects must be assessed). To propagate these effects to the coastline, the waves leaving this small domain will be used as boundary conditions for a larger model domain which will assess the shoreline effects caused by the array. The immediate work is concerned with setting up the WAMIT model for a small array of point absorbers. A 1:33 scale lab test is planned and will provide data to validate the WAMIT model on this small domain before it is nested with the larger domain to estimate shoreline effects.

Model Calibration Efforts for the International Space Station's Solar Array Mast

NASA Technical Reports Server (NTRS)

Elliott, Kenny B.; Horta, Lucas G.; Templeton, Justin D.; Knight, Norman F., Jr.

2012-01-01

The International Space Station (ISS) relies on sixteen solar-voltaic blankets to provide electrical power to the station. Each pair of blankets is supported by a deployable boom called the Folding Articulated Square Truss Mast (FAST Mast). At certain ISS attitudes, the solar arrays can be positioned in such a way that shadowing of either one or three longerons causes an unexpected asymmetric thermal loading that if unchecked can exceed the operational stability limits of the mast. Work in this paper documents part of an independent NASA Engineering and Safety Center effort to assess the existing operational limits. Because of the complexity of the system, the problem is being worked using a building-block progression from components (longerons), to units (single or multiple bays), to assembly (full mast). The paper presents results from efforts to calibrate the longeron components. The work includes experimental testing of two types of longerons (straight and tapered), development of Finite Element (FE) models, development of parameter uncertainty models, and the establishment of a calibration and validation process to demonstrate adequacy of the models. Models in the context of this paper refer to both FE model and probabilistic parameter models. Results from model calibration of the straight longerons show that the model is capable of predicting the mean load, axial strain, and bending strain. For validation, parameter values obtained from calibration of straight longerons are used to validate experimental results for the tapered longerons.

Assessment of the biophysical impacts of utility-scale photovoltaics through observations and modelling

NASA Astrophysics Data System (ADS)

Broadbent, A. M.; Georgescu, M.; Krayenhoff, E. S.; Sailor, D.

2017-12-01

Utility-scale solar power plants are a rapidly growing component of the solar energy sector. Utility-scale photovoltaic (PV) solar power generation in the United States has increased by 867% since 2012 (EIA, 2016). This expansion is likely to continue as the cost PV technologies decrease. While most agree that solar power can decrease greenhouse gas emissions, the biophysical effects of PV systems on surface energy balance (SEB), and implications for surface climate, are not well understood. To our knowledge, there has never been a detailed observational study of SEB at a utility-scale solar array. This study presents data from an eddy covariance observational tower, temporarily placed above a utility-scale PV array in Southern Arizona. Comparison of PV SEB with a reference (unmodified) site, shows that solar panels can alter the SEB and near surface climate. SEB observations are used to develop and validate a new and more complete SEB PV model. In addition, the PV model is compared to simpler PV modelling methods. The simpler PV models produce differing results to our newly developed model and cannot capture the more complex processes that influence PV SEB. Finally, hypothetical scenarios of PV expansion across the continental United States (CONUS) were developed using various spatial mapping criteria. CONUS simulations of PV expansion reveal regional variability in biophysical effects of PV expansion. The study presents the first rigorous and validated simulations of the biophysical effects of utility-scale PV arrays.

Simulating effects of a wind-turbine array using LES and RANS: Simulating turbines using LES and RANS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vanderwende, Brian J.; Kosović, Branko; Lundquist, Julie K.

2016-08-27

Growth in wind power production has motivated investigation of wind-farm impacts on in situ flow fields and downstream interactions with agriculture and other wind farms. These impacts can be simulated with both large-eddy simulations (LES) and mesoscale wind-farm parameterizations (WFP). The Weather Research and Forecasting (WRF) model offers both approaches. We used the validated generalized actuator disk (GAD) parameterization in WRF-LES to assess WFP performance. A 12-turbine array was simulated using the GAD model and the WFP in WRF. We examined the performance of each scheme in both convective and stable conditions. The GAD model and WFP produced qualitatively similarmore » wind speed deficits and turbulent kinetic energy (TKE) production across the array in both stability regimes, though the magnitudes of velocity deficits and TKE production levels were underestimated and overestimated, respectively. While wake growth slowed in the latter half of the WFP array as expected, wakes did not approach steady state by the end of the array as simulated by the GAD model. A sensitivity test involving the deactivation of explicit TKE production by the WFP resulted in turbulence levels within the array well that were below those produced by the GAD in both stable and unstable conditions. Finally, the WFP overestimated downwind power production deficits in stable conditions because of the lack of wake stabilization in the latter half of the array.« less

Seismic Imaging of the Source Physics Experiment Site with the Large-N Seismic Array

NASA Astrophysics Data System (ADS)

Chen, T.; Snelson, C. M.; Mellors, R. J.

2017-12-01

The Source Physics Experiment (SPE) consists of a series of chemical explosions at the Nevada National Security Site. The goal of SPE is to understand seismic wave generation and propagation from these explosions. To achieve this goal, we need an accurate geophysical model of the SPE site. A Large-N seismic array that was deployed at the SPE site during one of the chemical explosions (SPE-5) helps us construct high-resolution local geophysical model. The Large-N seismic array consists of 996 geophones, and covers an area of approximately 2 × 2.5 km. The array is located in the northern end of the Yucca Flat basin, at a transition from Climax Stock (granite) to Yucca Flat (alluvium). In addition to the SPE-5 explosion, the Large-N array also recorded 53 weight drops. Using the Large-N seismic array recordings, we perform body wave and surface wave velocity analysis, and obtain 3D seismic imaging of the SPE site for the top crust of approximately 1 km. The imaging results show clear variation of geophysical parameter with local geological structures, including heterogeneous weathering layer and various rock types. The results of this work are being incorporated in the larger 3D modeling effort of the SPE program to validate the predictive models developed for the site.

Using Measured Plane-of-Array Data Directly in Photovoltaic Modeling: Methodology and Validation: Preprint

DOE Office of Scientific and Technical Information (OSTI.GOV)

Freeman, Janine; Freestate, David; Riley, Cameron

2016-11-01

Measured plane-of-array (POA) irradiance may provide a lower-cost alternative to standard irradiance component data for photovoltaic (PV) system performance modeling without loss of accuracy. Previous work has shown that transposition models typically used by PV models to calculate POA irradiance from horizontal data introduce error into the POA irradiance estimates, and that measured POA data can correlate better to measured performance data. However, popular PV modeling tools historically have not directly used input POA data. This paper introduces a new capability in NREL's System Advisor Model (SAM) to directly use POA data in PV modeling, and compares SAM results frommore » both POA irradiance and irradiance components inputs against measured performance data for eight operating PV systems.« less

Using Measured Plane-of-Array Data Directly in Photovoltaic Modeling: Methodology and Validation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Freeman, Janine; Freestate, David; Hobbs, William

2016-11-21

Measured plane-of-array (POA) irradiance may provide a lower-cost alternative to standard irradiance component data for photovoltaic (PV) system performance modeling without loss of accuracy. Previous work has shown that transposition models typically used by PV models to calculate POA irradiance from horizontal data introduce error into the POA irradiance estimates, and that measured POA data can correlate better to measured performance data. However, popular PV modeling tools historically have not directly used input POA data. This paper introduces a new capability in NREL's System Advisor Model (SAM) to directly use POA data in PV modeling, and compares SAM results frommore » both POA irradiance and irradiance components inputs against measured performance data for eight operating PV systems.« less

Using Measured Plane-of-Array Data Directly in Photovoltaic Modeling: Methodology and Validation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Freeman, Janine; Freestate, David; Hobbs, William

2016-06-05

Measured plane-of-array (POA) irradiance may provide a lower-cost alternative to standard irradiance component data for photovoltaic (PV) system performance modeling without loss of accuracy. Previous work has shown that transposition models typically used by PV models to calculate POA irradiance from horizontal data introduce error into the POA irradiance estimates, and that measured POA data can correlate better to measured performance data. However, popular PV modeling tools historically have not directly used input POA data. This paper introduces a new capability in NREL's System Advisor Model (SAM) to directly use POA data in PV modeling, and compares SAM results frommore » both POA irradiance and irradiance components inputs against measured performance data for eight operating PV systems.« less

Characterization of nonlinear ultrasound fields of 2D therapeutic arrays

PubMed Central

Yuldashev, Petr V.; Kreider, Wayne; Sapozhnikov, Oleg A.; Farr, Navid; Partanen, Ari; Bailey, Michael R.; Khokhlova, Vera

2015-01-01

A current trend in high intensity focused ultrasound (HIFU) technologies is to use 2D focused phased arrays that enable electronic steering of the focus, beamforming to avoid overheating of obstacles (such as ribs), and better focusing through inhomogeneities of soft tissue using time reversal methods. In many HIFU applications, the acoustic intensity in situ can reach thousands of W/cm2 leading to nonlinear propagation effects. At high power outputs, shock fronts develop in the focal region and significantly alter the bioeffects induced. Clinical applications of HIFU are relatively new and challenges remain for ensuring their safety and efficacy. A key component of these challenges is the lack of standard procedures for characterizing nonlinear HIFU fields under operating conditions. Methods that combine low-amplitude pressure measurements and nonlinear modeling of the pressure field have been proposed for axially symmetric single element transducers but have not yet been validated for the much more complex 3D fields generated by therapeutic arrays. Here, the method was tested for a clinical HIFU source comprising a 256-element transducer array. A numerical algorithm based on the Westervelt equation was used to enable 3D full-diffraction nonlinear modeling. With the acoustic holography method, the magnitude and phase of the acoustic field were measured at a low power output and used to determine the pattern of vibrations at the surface of the array. This pattern was then scaled to simulate a range of intensity levels near the elements up to 10 W/cm2. The accuracy of modeling was validated by comparison with direct measurements of the focal waveforms using a fiber-optic hydrophone. Simulation results and measurements show that shock fronts with amplitudes up to 100 MPa were present in focal waveforms at clinically relevant outputs, indicating the importance of strong nonlinear effects in ultrasound fields generated by HIFU arrays. PMID:26203345

Numerical Simulation of the Diffusion Processes in Nanoelectrode Arrays Using an Axial Neighbor Symmetry Approximation.

PubMed

Peinetti, Ana Sol; Gilardoni, Rodrigo S; Mizrahi, Martín; Requejo, Felix G; González, Graciela A; Battaglini, Fernando

2016-06-07

Nanoelectrode arrays have introduced a complete new battery of devices with fascinating electrocatalytic, sensitivity, and selectivity properties. To understand and predict the electrochemical response of these arrays, a theoretical framework is needed. Cyclic voltammetry is a well-fitted experimental technique to understand the undergoing diffusion and kinetics processes. Previous works describing microelectrode arrays have exploited the interelectrode distance to simulate its behavior as the summation of individual electrodes. This approach becomes limited when the size of the electrodes decreases to the nanometer scale due to their strong radial effect with the consequent overlapping of the diffusional fields. In this work, we present a computational model able to simulate the electrochemical behavior of arrays working either as the summation of individual electrodes or being affected by the overlapping of the diffusional fields without previous considerations. Our computational model relays in dividing a regular electrode array in cells. In each of them, there is a central electrode surrounded by neighbor electrodes; these neighbor electrodes are transformed in a ring maintaining the same active electrode area than the summation of the closest neighbor electrodes. Using this axial neighbor symmetry approximation, the problem acquires a cylindrical symmetry, being applicable to any diffusion pattern. The model is validated against micro- and nanoelectrode arrays showing its ability to predict their behavior and therefore to be used as a designing tool.

Jet array impingement flow distributions and heat transfer characteristics. Effects of initial crossflow and nonuniform array geometry. [gas turbine engine component cooling

NASA Technical Reports Server (NTRS)

Florschuetz, L. W.; Metzger, D. E.; Su, C. C.; Isoda, Y.; Tseng, H. H.

1982-01-01

Two-dimensional arrays of circular air jets impinging on a heat transfer surface parallel to the jet orifice plate are considered. The jet flow, after impingement, is constrained to exit in a single direction along the channel formed by the jet orifice plate and the heat transfer surface. The configurations considered are intended to model those of interest in current and contemplated gas turbine airfoil midchord cooling applications. The effects of an initial crossflow which approaches the array through an upstream extension of the channel are considered. Flow distributions as well as heat transfer coefficients and adiabatic wall temperatures resolved to one streamwise hole spacing were measured as a function of the initial crossflow rate and temperature relative to the jet flow rate and temperature. Both Nusselt number profiles and dimensionless adiabatic wall temperature (effectiveness) profiles are presented and discussed. Special test results which show a significant reduction of jet orifice discharge coefficients owing to the effect of a confined crossflow are also presented, along with a flow distribution model which incorporates those effects. A nonuniform array flow distribution model is developed and validated.

Elastic-Waveform Inversion with Compressive Sensing for Sparse Seismic Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Youzuo; Huang, Lianjie

2015-01-28

Accurate velocity models of compressional- and shear-waves are essential for geothermal reservoir characterization and microseismic imaging. Elastic-waveform inversion of multi-component seismic data can provide high-resolution inversion results of subsurface geophysical properties. However, the method requires seismic data acquired using dense source and receiver arrays. In practice, seismic sources and/or geophones are often sparsely distributed on the surface and/or in a borehole, such as 3D vertical seismic profiling (VSP) surveys. We develop a novel elastic-waveform inversion method with compressive sensing for inversion of sparse seismic data. We employ an alternating-minimization algorithm to solve the optimization problem of our new waveform inversionmore » method. We validate our new method using synthetic VSP data for a geophysical model built using geologic features found at the Raft River enhanced-geothermal-system (EGS) field. We apply our method to synthetic VSP data with a sparse source array and compare the results with those obtained with a dense source array. Our numerical results demonstrate that the velocity models produced with our new method using a sparse source array are almost as accurate as those obtained using a dense source array.« less

Joint Estimation of Time-Frequency Signature and DOA Based on STFD for Multicomponent Chirp Signals

PubMed Central

Zhao, Ziyue; Liu, Congfeng

2014-01-01

In the study of the joint estimation of time-frequency signature and direction of arrival (DOA) for multicomponent chirp signals, an estimation method based on spatial time-frequency distributions (STFDs) is proposed in this paper. Firstly, array signal model for multicomponent chirp signals is presented and then array processing is applied in time-frequency analysis to mitigate cross-terms. According to the results of the array processing, Hough transform is performed and the estimation of time-frequency signature is obtained. Subsequently, subspace method for DOA estimation based on STFD matrix is achieved. Simulation results demonstrate the validity of the proposed method. PMID:27382610

Joint Estimation of Time-Frequency Signature and DOA Based on STFD for Multicomponent Chirp Signals.

PubMed

Zhao, Ziyue; Liu, Congfeng

2014-01-01

In the study of the joint estimation of time-frequency signature and direction of arrival (DOA) for multicomponent chirp signals, an estimation method based on spatial time-frequency distributions (STFDs) is proposed in this paper. Firstly, array signal model for multicomponent chirp signals is presented and then array processing is applied in time-frequency analysis to mitigate cross-terms. According to the results of the array processing, Hough transform is performed and the estimation of time-frequency signature is obtained. Subsequently, subspace method for DOA estimation based on STFD matrix is achieved. Simulation results demonstrate the validity of the proposed method.

Modelling and restoration of ultrasonic phased-array B-scan images.

PubMed

Ardouin, J P; Venetsanopoulos, A N

1985-10-01

A model is presented for the radio-frequency image produced by a B-scan (pulse-echo) ultrasound imaging system using a phased-array transducer. This type of scanner is widely used for real-time heart imaging. The model allows for dynamic focusing as well as an acoustic lens focusing the beam in the elevation plane. A result of the model is an expression to compute the space-variant point spread function (PSF) of the system. This is made possible by the use of a combination of Fresnel and Fraunhoffer approximations which are valid in the range of interest for practical applications. The PSF is used to design restoration filters in order to improve image resolution. The filters are then applied to experimental images of wires.

Target Tracking Using SePDAF under Ambiguous Angles for Distributed Array Radar

PubMed Central

Long, Teng; Zhang, Honggang; Zeng, Tao; Chen, Xinliang; Liu, Quanhua; Zheng, Le

2016-01-01

Distributed array radar can improve radar detection capability and measurement accuracy. However, it will suffer cyclic ambiguity in its angle estimates according to the spatial Nyquist sampling theorem since the large sparse array is undersampling. Consequently, the state estimation accuracy and track validity probability degrades when the ambiguous angles are directly used for target tracking. This paper proposes a second probability data association filter (SePDAF)-based tracking method for distributed array radar. Firstly, the target motion model and radar measurement model is built. Secondly, the fusion result of each radar’s estimation is employed to the extended Kalman filter (EKF) to finish the first filtering. Thirdly, taking this result as prior knowledge, and associating with the array-processed ambiguous angles, the SePDAF is applied to accomplish the second filtering, and then achieving a high accuracy and stable trajectory with relatively low computational complexity. Moreover, the azimuth filtering accuracy will be promoted dramatically and the position filtering accuracy will also improve. Finally, simulations illustrate the effectiveness of the proposed method. PMID:27618058

CIDR

Science.gov Websites

Consortium Developed Arrays Infinium Human Drug Core Array The Illumina nfinium DrugDev Consortium array drug target discovery, validation and treatment response. Detailed Information on Array Infinium Human

Large Ka-Band Slot Array for Digital Beam-Forming Applications

NASA Technical Reports Server (NTRS)

Rengarajan, Sembiam; Zawadzki, Mark S.; Hodges, Richard E.

2011-01-01

This work describes the development of a large Ka Band Slot Array for the Glacier and Land Ice Surface Topography Interferometer (GLISTIN), a proposed spaceborne interferometric synthetic aperture radar for topographic mapping of ice sheets and glaciers. GLISTIN will collect ice topography measurement data over a wide swath with sub-seasonal repeat intervals using a Ka-band digitally beamformed antenna. For technology demonstration purpose a receive array of size 1x1 m, consisting of 160x160 radiating elements, was developed. The array is divided into 16 sticks, each stick consisting of 160x10 radiating elements, whose outputs are combined to produce 16 digital beams. A transmit array stick was also developed. The antenna arrays were designed using Elliott's design equations with the use of an infinite-array mutual-coupling model. A Floquet wave model was used to account for external coupling between radiating slots. Because of the use of uniform amplitude and phase distribution, the infinite array model yielded identical values for all radiating elements but for alternating offsets, and identical coupling elements but for alternating positive and negative tilts. Waveguide-fed slot arrays are finding many applications in radar, remote sensing, and communications applications because of their desirable properties such as low mass, low volume, and ease of design, manufacture, and deployability. Although waveguide-fed slot arrays have been designed, built, and tested in the past, this work represents several advances to the state of the art. The use of the infinite array model for the radiating slots yielded a simple design process for radiating and coupling slots. Method of moments solution to the integral equations for alternating offset radiating slots in an infinite array environment was developed and validated using the commercial finite element code HFSS. For the analysis purpose, a method of moments code was developed for an infinite array of subarrays. Overall the 1x1 m array was found to be successful in meeting the objectives of the GLISTIN demonstration antenna, especially with respect to the 0.042deg, 1/10th of the beamwidth of each stick, relative beam alignment between sticks.

Genome-Wide Mapping of Copy Number Variation in Humans: Comparative Analysis of High Resolution Array Platforms

PubMed Central

Haraksingh, Rajini R.; Abyzov, Alexej; Gerstein, Mark; Urban, Alexander E.; Snyder, Michael

2011-01-01

Accurate and efficient genome-wide detection of copy number variants (CNVs) is essential for understanding human genomic variation, genome-wide CNV association type studies, cytogenetics research and diagnostics, and independent validation of CNVs identified from sequencing based technologies. Numerous, array-based platforms for CNV detection exist utilizing array Comparative Genome Hybridization (aCGH), Single Nucleotide Polymorphism (SNP) genotyping or both. We have quantitatively assessed the abilities of twelve leading genome-wide CNV detection platforms to accurately detect Gold Standard sets of CNVs in the genome of HapMap CEU sample NA12878, and found significant differences in performance. The technologies analyzed were the NimbleGen 4.2 M, 2.1 M and 3×720 K Whole Genome and CNV focused arrays, the Agilent 1×1 M CGH and High Resolution and 2×400 K CNV and SNP+CGH arrays, the Illumina Human Omni1Quad array and the Affymetrix SNP 6.0 array. The Gold Standards used were a 1000 Genomes Project sequencing-based set of 3997 validated CNVs and an ultra high-resolution aCGH-based set of 756 validated CNVs. We found that sensitivity, total number, size range and breakpoint resolution of CNV calls were highest for CNV focused arrays. Our results are important for cost effective CNV detection and validation for both basic and clinical applications. PMID:22140474

Moving microphone arrays to reduce spatial aliasing in the beamforming technique: theoretical background and numerical investigation.

PubMed

Cigada, Alfredo; Lurati, Massimiliano; Ripamonti, Francesco; Vanali, Marcello

2008-12-01

This paper introduces a measurement technique aimed at reducing or possibly eliminating the spatial aliasing problem in the beamforming technique. Beamforming main disadvantages are a poor spatial resolution, at low frequency, and the spatial aliasing problem, at higher frequency, leading to the identification of false sources. The idea is to move the microphone array during the measurement operation. In this paper, the proposed approach is theoretically and numerically investigated by means of simple sound propagation models, proving its efficiency in reducing the spatial aliasing. A number of different array configurations are numerically investigated together with the most important parameters governing this measurement technique. A set of numerical results concerning the case of a planar rotating array is shown, together with a first experimental validation of the method.

Spacecraft Multiple Array Communication System Performance Analysis

NASA Technical Reports Server (NTRS)

Hwu, Shian U.; Desilva, Kanishka; Sham, Catherine C.

2010-01-01

The Communication Systems Simulation Laboratory (CSSL) at the NASA Johnson Space Center is tasked to perform spacecraft and ground network communication system simulations, design validation, and performance verification. The CSSL has developed simulation tools that model spacecraft communication systems and the space and ground environment in which the tools operate. In this paper, a spacecraft communication system with multiple arrays is simulated. Multiple array combined technique is used to increase the radio frequency coverage and data rate performance. The technique is to achieve phase coherence among the phased arrays to combine the signals at the targeting receiver constructively. There are many technical challenges in spacecraft integration with a high transmit power communication system. The array combining technique can improve the communication system data rate and coverage performances without increasing the system transmit power requirements. Example simulation results indicate significant performance improvement can be achieved with phase coherence implementation.

Validity of the two-level model for Viterbi decoder gap-cycle performance

NASA Technical Reports Server (NTRS)

Dolinar, S.; Arnold, S.

1990-01-01

A two-level model has previously been proposed for approximating the performance of a Viterbi decoder which encounters data received with periodically varying signal-to-noise ratio. Such cyclically gapped data is obtained from the Very Large Array (VLA), either operating as a stand-alone system or arrayed with Goldstone. This approximate model predicts that the decoder error rate will vary periodically between two discrete levels with the same period as the gap cycle. It further predicts that the length of the gapped portion of the decoder error cycle for a constraint length K decoder will be about K-1 bits shorter than the actual duration of the gap. The two-level model for Viterbi decoder performance with gapped data is subjected to detailed validation tests. Curves showing the cyclical behavior of the decoder error burst statistics are compared with the simple square-wave cycles predicted by the model. The validity of the model depends on a parameter often considered irrelevant in the analysis of Viterbi decoder performance, the overall scaling of the received signal or the decoder's branch-metrics. Three scaling alternatives are examined: optimum branch-metric scaling and constant branch-metric scaling combined with either constant noise-level scaling or constant signal-level scaling. The simulated decoder error cycle curves roughly verify the accuracy of the two-level model for both the case of optimum branch-metric scaling and the case of constant branch-metric scaling combined with constant noise-level scaling. However, the model is not accurate for the case of constant branch-metric scaling combined with constant signal-level scaling.

The DS1 Mission and the Validation of the SCARLET Advanced Array

NASA Technical Reports Server (NTRS)

Stella, Paul M.; Nieraeth, Donald G.; Murphy, David M.; Eskenazi, Michael I.

2000-01-01

On October 24, 1998, the first of the NASA New Millenium Spacecraft, DS1, was successfully launched into Space. The objectives for this spacecraft are to test advanced technologies that can reduce the cost or risk of future missions. One of these technologies is the SCARLET concentrating solar array. Although part of the advanced technology validation study, the array is also the spacecraft's power source. Funded by BMDO, the SCARLET concentrator solar array is the first application of a refractive lens concentrator designed for space applications. As part of the DS1 validation process, the amount of diagnostics data that will be acquired is more extensive than would be the norm for a more conventional solar array. These data include temperature measurements at numerous locations on the 2-wing, 4-panel per wing, solar array. For each panel, one 5-cell module in one of the circuit strings is wired so that a complete I-V curve can be obtained. This data is used to verify sun pointing accuracy and array output performance. In addition, the spacecraft power load can be varied in a number of discrete steps from a small fraction of the array total power capability, up to maximum power. For each of the power loads, array operating voltage can be measured along with the current output from each wing. Preliminary in-space measurements suggest SCARLET performance is within one (1) percent of predictions made from ground data. This paper will briefly discuss the SCARLET configuration and critical features. Emphasis will be given to the results of the in-space validation, including array performance as a function of changing solar distance and array performance compared to pre-launch predictions.

Analytical modelling of Halbach linear generator incorporating pole shifting and piece-wise spring for ocean wave energy harvesting

NASA Astrophysics Data System (ADS)

Tan, Yimin; Lin, Kejian; Zu, Jean W.

2018-05-01

Halbach permanent magnet (PM) array has attracted tremendous research attention in the development of electromagnetic generators for its unique properties. This paper has proposed a generalized analytical model for linear generators. The slotted stator pole-shifting and implementation of Halbach array have been combined for the first time. Initially, the magnetization components of the Halbach array have been determined using Fourier decomposition. Then, based on the magnetic scalar potential method, the magnetic field distribution has been derived employing specially treated boundary conditions. FEM analysis has been conducted to verify the analytical model. A slotted linear PM generator with Halbach PM has been constructed to validate the model and further improved using piece-wise springs to trigger full range reciprocating motion. A dynamic model has been developed to characterize the dynamic behavior of the slider. This analytical method provides an effective tool in development and optimization of Halbach PM generator. The experimental results indicate that piece-wise springs can be employed to improve generator performance under low excitation frequency.

Tunable Thermal Radiative Properties of Nanotube and Nanowire Arrays

DTIC Science & Technology

2011-06-28

1t does not display a currently valid OMB control number PLEASE DO NOT RETURN YOUR FORM TO THE ABOVE ORGANIZATION. 1. REPORT DATE (DD-MM-YYYY) 12...band. Several dielectric function models have been developed to account for different mechanisms, such as Drude’s model for free electrons and...Lorentz oscillator model for phonons [7]. However, the parameters in these models are typically obtained from experiments, limiting their applications in

Validity and reliability of rectus femoris ultrasound measurements: Comparison of curved-array and linear-array transducers.

PubMed

Hammond, Kendra; Mampilly, Jobby; Laghi, Franco A; Goyal, Amit; Collins, Eileen G; McBurney, Conor; Jubran, Amal; Tobin, Martin J

2014-01-01

Muscle-mass loss augers increased morbidity and mortality in critically ill patients. Muscle-mass loss can be assessed by wide linear-array ultrasound transducers connected to cumbersome, expensive console units. Whether cheaper, hand-carried units equipped with curved-array transducers can be used as alternatives is unknown. Accordingly, our primary aim was to investigate in 15 nondisabled subjects the validity of measurements of rectus femoris cross-sectional area by using a curved-array transducer against a linear-array transducer-the reference-standard technique. In these subjects, we also determined the reliability of measurements obtained by a novice operator versus measurements obtained by an experienced operator. Lastly, the relationship between quadriceps strength and rectus area recorded by two experienced operators with a curved-array transducer was assessed in 17 patients with chronic obstructive pulmonary disease (COPD). In nondisabled subjects, the rectus cross-sectional area measured with the curved-array transducer by the novice and experienced operators was valid (intraclass correlation coefficient [ICC]: 0.98, typical percentage error [%TE]: 3.7%) and reliable (ICC: 0.79, %TE: 9.7%). In the subjects with COPD, both reliability (ICC: 0.99) and repeatability (%TE: 7.6% and 9.8%) were high. Rectus area was related to quadriceps strength in COPD for both experienced operators (coefficient of determination: 0.67 and 0.70). In conclusion, measurements of rectus femoris cross-sectional area recorded with a curved-array transducer connected to a hand-carried unit are valid, reliable, and reproducible, leading us to contend that this technique is suitable for cross-sectional and longitudinal studies.

Cross-flow turbines: physical and numerical model studies towards improved array simulations

NASA Astrophysics Data System (ADS)

Wosnik, M.; Bachant, P.

2015-12-01

Cross-flow, or vertical-axis turbines, show potential in marine hydrokinetic (MHK) and wind energy applications. As turbine designs mature, the research focus is shifting from individual devices towards improving turbine array layouts for maximizing overall power output, i.e., minimizing wake interference for axial-flow turbines, or taking advantage of constructive wake interaction for cross-flow turbines. Numerical simulations are generally better suited to explore the turbine array design parameter space, as physical model studies of large arrays at large model scale would be expensive. However, since the computing power available today is not sufficient to conduct simulations of the flow in and around large arrays of turbines with fully resolved turbine geometries, the turbines' interaction with the energy resource needs to be parameterized, or modeled. Most models in use today, e.g. actuator disk, are not able to predict the unique wake structure generated by cross-flow turbines. Experiments were carried out using a high-resolution turbine test bed in a large cross-section tow tank, designed to achieve sufficiently high Reynolds numbers for the results to be Reynolds number independent with respect to turbine performance and wake statistics, such that they can be reliably extrapolated to full scale and used for model validation. To improve parameterization in array simulations, an actuator line model (ALM) was developed to provide a computationally feasible method for simulating full turbine arrays inside Navier--Stokes models. The ALM predicts turbine loading with the blade element method combined with sub-models for dynamic stall and flow curvature. The open-source software is written as an extension library for the OpenFOAM CFD package, which allows the ALM body force to be applied to their standard RANS and LES solvers. Turbine forcing is also applied to volume of fluid (VOF) models, e.g., for predicting free surface effects on submerged MHK devices. An additional sub-model is considered for injecting turbulence model scalar quantities based on actuator line element loading. Results are presented for the simulation of performance and wake dynamics of axial- and cross-flow turbines and compared with experiments and body-fitted mesh, blade-resolving CFD. Supported by NSF-CBET grant 1150797.

A transmit/receive radiofrequency array for imaging the carotid arteries at 7 Tesla: coil design and first in vivo results.

PubMed

Kraff, Oliver; Bitz, Andreas K; Breyer, Tobias; Kruszona, Stefan; Maderwald, Stefan; Brote, Irina; Gizewski, Elke R; Ladd, Mark E; Quick, Harald H

2011-04-01

To develop a transmit/receive radiofrequency (RF) array for magnetic resonance imaging (MRI) of the carotid arteries at 7 T. The prototype is characterized in numerical simulations and bench measurements, and the feasibility of plaque imaging at 7 T is demonstrated in first in vivo images. The RF phased array coil consists of 8 surface loop coils. To allow imaging of both sides of the neck, the RF array is divided into 2 coil clusters, each with 4 overlapping loop elements. For safety validation, numerical computations of the RF field distribution and the corresponding specific absorption rate were performed on the basis of a heterogeneous human body model. To validate the coil model, maps of the transmit B1(+) field were compared between simulation and measurement. In vivo images of a healthy volunteer and a patient (ulcerating plaque and a 50% stenosis of the right internal carotid artery) were acquired using a 3-dimensional FLASH sequence with a high isotropic spatial resolution of 0.54 mm as well as using pulse-triggered proton density (PD)/T2-weighted turbo spin echo sequences. Measurements of the S-parameters yielded a reflection and isolation of the coil elements of better than -18 and -13 dB, respectively. Measurements of the g-factor indicated good image quality for parallel imaging acceleration factors up to 2.4. A similar distribution and a very good match of the absolute values were found between the measured and simulated B1(+) transmit RF field for the validation of the coil model. In vivo images revealed good signal excitation of both sides of the neck and a high vessel-to-background image contrast for the noncontrast-enhanced 3-dimensional FLASH sequence. Imaging at 7 T could depict the extent of stenosis, and revealed the disruption and ulcer of the plaque. This study demonstrates that 2 four-channel transmit/receive RF arrays for each side of the neck is a suitable concept for in vivo MRI of the carotid arteries at 7 Tesla. Further studies are needed to explore and exploit the full potential of 7 T high-field MRI for carotid atherosclerotic plaque imaging.

Modeling of Diamond Field-Emitter-Arrays for high brightness photocathode applications

NASA Astrophysics Data System (ADS)

Kwan, Thomas; Huang, Chengkun; Piryatinski, Andrei; Lewellen, John; Nichols, Kimberly; Choi, Bo; Pavlenko, Vitaly; Shchegolkov, Dmitry; Nguyen, Dinh; Andrews, Heather; Simakov, Evgenya

2017-10-01

We propose to employ Diamond Field-Emitter-Arrays (DFEAs) as high-current-density ultra-low-emittance photocathodes for compact laser-driven dielectric accelerators capable of generating ultra-high brightness electron beams for advanced applications. We develop a semi-classical Monte-Carlo photoemission model for DFEAs that includes carriers' transport to the emitter surface and tunneling through the surface under external fields. The model accounts for the electronic structure size quantization affecting the transport and tunneling process within the sharp diamond tips. We compare this first principle model with other field emission models, such as the Child-Langmuir and Murphy-Good models. By further including effects of carrier photoexcitation, we perform simulations of the DFEAs' photoemission quantum yield and the emitted electron beam. Details of the theoretical model and validation against preliminary experimental data will be presented. Work ssupported by LDRD program at LANL.

Benchmarking criticality analysis of TRIGA fuel storage racks.

PubMed

Robinson, Matthew Loren; DeBey, Timothy M; Higginbotham, Jack F

2017-01-01

A criticality analysis was benchmarked to sub-criticality measurements of the hexagonal fuel storage racks at the United States Geological Survey TRIGA MARK I reactor in Denver. These racks, which hold up to 19 fuel elements each, are arranged at 0.61m (2 feet) spacings around the outer edge of the reactor. A 3-dimensional model was created of the racks using MCNP5, and the model was verified experimentally by comparison to measured subcritical multiplication data collected in an approach to critical loading of two of the racks. The validated model was then used to show that in the extreme condition where the entire circumference of the pool was lined with racks loaded with used fuel the storage array is subcritical with a k value of about 0.71; well below the regulatory limit of 0.8. A model was also constructed of the rectangular 2×10 fuel storage array used in many other TRIGA reactors to validate the technique against the original TRIGA licensing sub-critical analysis performed in 1966. The fuel used in this study was standard 20% enriched (LEU) aluminum or stainless steel clad TRIGA fuel. Copyright © 2016. Published by Elsevier Ltd.

New Monte Carlo model of cylindrical diffusing fibers illustrates axially heterogeneous fluorescence detection: simulation and experimental validation

PubMed Central

Baran, Timothy M.; Foster, Thomas H.

2011-01-01

We present a new Monte Carlo model of cylindrical diffusing fibers that is implemented with a graphics processing unit. Unlike previously published models that approximate the diffuser as a linear array of point sources, this model is based on the construction of these fibers. This allows for accurate determination of fluence distributions and modeling of fluorescence generation and collection. We demonstrate that our model generates fluence profiles similar to a linear array of point sources, but reveals axially heterogeneous fluorescence detection. With axially homogeneous excitation fluence, approximately 90% of detected fluorescence is collected by the proximal third of the diffuser for μs'/μa = 8 in the tissue and 70 to 88% is collected in this region for μs'/μa = 80. Increased fluorescence detection by the distal end of the diffuser relative to the center section is also demonstrated. Validation of these results was performed by creating phantoms consisting of layered fluorescent regions. Diffusers were inserted into these layered phantoms and fluorescence spectra were collected. Fits to these spectra show quantitative agreement between simulated fluorescence collection sensitivities and experimental results. These results will be applicable to the use of diffusers as detectors for dosimetry in interstitial photodynamic therapy. PMID:21895311

Optical invisibility through metasurfaces made of plasmonic nanoparticles

NASA Astrophysics Data System (ADS)

Monti, A.; Alù, A.; Toscano, A.; Bilotti, F.

2015-03-01

In this paper, we investigate the application of the mantle cloaking technique to near-infrared and visible frequencies, analyzing and designing thin covers consisting of 2D arrays of plasmonic nanoparticles. First, we validate and generalize an analytical model recently appeared in the literature to describe a 2D array of plasmonic nanoparticles as a metasurface characterized by its homogenized surface reactance. We prove that the proposed model allows to efficiently design 2D mantle cloaks with an assigned surface reactance, enabling, thus, the extension of the mantle cloaking technique to optical frequencies. Then, we design realistic optical mantle cloaks made of 2D arrays of spheroidal plasmonic nanoparticles with a high eccentricity. We show that the proposed cloaks allow significant, moderately broadband cloaking effects at visible frequencies. In our designs, we consider realistic losses and non-critical nanoparticle dimensions to envision a practical realization of the proposed cloaks.

Recent developments in the economic modeling of photovoltaic module manufacturing

NASA Technical Reports Server (NTRS)

Chamberlain, R. G.

1979-01-01

Recent developments in the solar array manufacturing industry costing standards (SAMICS) are described. Consideration is given to the added capability to handle arbitrary operating schedules and the revised procedure for calculation of one-time costs. The results of an extensive validation study are summarized.

Modeling change from large-scale high-dimensional spatio-temporal array data

NASA Astrophysics Data System (ADS)

Lu, Meng; Pebesma, Edzer

2014-05-01

The massive data that come from Earth observation satellite and other sensors provide significant information for modeling global change. At the same time, the high dimensionality of the data has brought challenges in data acquisition, management, effective querying and processing. In addition, the output of earth system modeling tends to be data intensive and needs methodologies for storing, validation, analyzing and visualization, e.g. as maps. An important proportion of earth system observations and simulated data can be represented as multi-dimensional array data, which has received increasingly attention in big data management and spatial-temporal analysis. Study cases will be developed in natural science such as climate change, hydrological modeling, sediment dynamics, from which the addressing of big data problems is necessary. Multi-dimensional array-based database management and analytics system such as Rasdaman, SciDB, and R will be applied to these cases. From these studies will hope to learn the strengths and weaknesses of these systems, how they might work together or how semantics of array operations differ, through addressing the problems associated with big data. Research questions include: • How can we reduce dimensions spatially and temporally, or thematically? • How can we extend existing GIS functions to work on multidimensional arrays? • How can we combine data sets of different dimensionality or different resolutions? • Can map algebra be extended to an intelligible array algebra? • What are effective semantics for array programming of dynamic data driven applications? • In which sense are space and time special, as dimensions, compared to other properties? • How can we make the analysis of multi-spectral, multi-temporal and multi-sensor earth observation data easy?

Transcriptomic SNP discovery for custom genotyping arrays: impacts of sequence data, SNP calling method and genotyping technology on the probability of validation success.

PubMed

Humble, Emily; Thorne, Michael A S; Forcada, Jaume; Hoffman, Joseph I

2016-08-26

Single nucleotide polymorphism (SNP) discovery is an important goal of many studies. However, the number of 'putative' SNPs discovered from a sequence resource may not provide a reliable indication of the number that will successfully validate with a given genotyping technology. For this it may be necessary to account for factors such as the method used for SNP discovery and the type of sequence data from which it originates, suitability of the SNP flanking sequences for probe design, and genomic context. To explore the relative importance of these and other factors, we used Illumina sequencing to augment an existing Roche 454 transcriptome assembly for the Antarctic fur seal (Arctocephalus gazella). We then mapped the raw Illumina reads to the new hybrid transcriptome using BWA and BOWTIE2 before calling SNPs with GATK. The resulting markers were pooled with two existing sets of SNPs called from the original 454 assembly using NEWBLER and SWAP454. Finally, we explored the extent to which SNPs discovered using these four methods overlapped and predicted the corresponding validation outcomes for both Illumina Infinium iSelect HD and Affymetrix Axiom arrays. Collating markers across all discovery methods resulted in a global list of 34,718 SNPs. However, concordance between the methods was surprisingly poor, with only 51.0 % of SNPs being discovered by more than one method and 13.5 % being called from both the 454 and Illumina datasets. Using a predictive modeling approach, we could also show that SNPs called from the Illumina data were on average more likely to successfully validate, as were SNPs called by more than one method. Above and beyond this pattern, predicted validation outcomes were also consistently better for Affymetrix Axiom arrays. Our results suggest that focusing on SNPs called by more than one method could potentially improve validation outcomes. They also highlight possible differences between alternative genotyping technologies that could be explored in future studies of non-model organisms.

Gene expression profile of mouse prostate tumors reveals dysregulations in major biological processes and identifies potential murine targets for preclinical development of human prostate cancer therapy.

PubMed

Haram, Kerstyn M; Peltier, Heidi J; Lu, Bin; Bhasin, Manoj; Otu, Hasan H; Choy, Bob; Regan, Meredith; Libermann, Towia A; Latham, Gary J; Sanda, Martin G; Arredouani, Mohamed S

2008-10-01

Translation of preclinical studies into effective human cancer therapy is hampered by the lack of defined molecular expression patterns in mouse models that correspond to the human counterpart. We sought to generate an open source TRAMP mouse microarray dataset and to use this array to identify differentially expressed genes from human prostate cancer (PCa) that have concordant expression in TRAMP tumors, and thereby represent lead targets for preclinical therapy development. We performed microarrays on total RNA extracted and amplified from eight TRAMP tumors and nine normal prostates. A subset of differentially expressed genes was validated by QRT-PCR. Differentially expressed TRAMP genes were analyzed for concordant expression in publicly available human prostate array datasets and a subset of resulting genes was analyzed by QRT-PCR. Cross-referencing differentially expressed TRAMP genes to public human prostate array datasets revealed 66 genes with concordant expression in mouse and human PCa; 56 between metastases and normal and 10 between primary tumor and normal tissues. Of these 10 genes, two, Sox4 and Tubb2a, were validated by QRT-PCR. Our analysis also revealed various dysregulations in major biologic pathways in the TRAMP prostates. We report a TRAMP microarray dataset of which a gene subset was validated by QRT-PCR with expression patterns consistent with previous gene-specific TRAMP studies. Concordance analysis between TRAMP and human PCa associated genes supports the utility of the model and suggests several novel molecular targets for preclinical therapy.

Model-based adaptive 3D sonar reconstruction in reverberating environments.

PubMed

Saucan, Augustin-Alexandru; Sintes, Christophe; Chonavel, Thierry; Caillec, Jean-Marc Le

2015-10-01

In this paper, we propose a novel model-based approach for 3D underwater scene reconstruction, i.e., bathymetry, for side scan sonar arrays in complex and highly reverberating environments like shallow water areas. The presence of multipath echoes and volume reverberation generates false depth estimates. To improve the resulting bathymetry, this paper proposes and develops an adaptive filter, based on several original geometrical models. This multimodel approach makes it possible to track and separate the direction of arrival trajectories of multiple echoes impinging the array. Echo tracking is perceived as a model-based processing stage, incorporating prior information on the temporal evolution of echoes in order to reject cluttered observations generated by interfering echoes. The results of the proposed filter on simulated and real sonar data showcase the clutter-free and regularized bathymetric reconstruction. Model validation is carried out with goodness of fit tests, and demonstrates the importance of model-based processing for bathymetry reconstruction.

Optimization and Validation of Rotating Current Excitation with GMR Array Sensors for Riveted

DTIC Science & Technology

2016-09-16

distribution. Simulation results, using both an optimized coil and a conventional coil, are generated using the finite element method (FEM) model...optimized coil and a conventional coil, are generated using the finite element method (FEM) model. The signal magnitude for an optimized coil is seen to be...optimized coil. 4. Model Based Performance Analysis A 3D finite element model (FEM) is used to analyze the performance of the optimized coil and

Nonlinear Blind Compensation for Array Signal Processing Application

PubMed Central

Ma, Hong; Jin, Jiang; Zhang, Hua

2018-01-01

Recently, nonlinear blind compensation technique has attracted growing attention in array signal processing application. However, due to the nonlinear distortion stemming from array receiver which consists of multi-channel radio frequency (RF) front-ends, it is too difficult to estimate the parameters of array signal accurately. A novel nonlinear blind compensation algorithm aims at the nonlinearity mitigation of array receiver and its spurious-free dynamic range (SFDR) improvement, which will be more precise to estimate the parameters of target signals such as their two-dimensional directions of arrival (2-D DOAs). Herein, the suggested method is designed as follows: the nonlinear model parameters of any channel of RF front-end are extracted to synchronously compensate the nonlinear distortion of the entire receiver. Furthermore, a verification experiment on the array signal from a uniform circular array (UCA) is adopted to testify the validity of our approach. The real-world experimental results show that the SFDR of the receiver is enhanced, leading to a significant improvement of the 2-D DOAs estimation performance for weak target signals. And these results demonstrate that our nonlinear blind compensation algorithm is effective to estimate the parameters of weak array signal in concomitance with strong jammers. PMID:29690571

Monitoring pressure profiles across an airfoil with a fiber Bragg grating sensor array

NASA Astrophysics Data System (ADS)

Papageorgiou, Anthony W.; Parkinson, Luke A.; Karas, Andrew R.; Hansen, Kristy L.; Arkwright, John W.

2018-02-01

Fluid flow over an airfoil section creates a pressure difference across the upper and lower surfaces, thus generating lift. Successful wing design is a combination of engineering design and experience in the field, with subtleties in design and manufacture having significant impact on the amount of lift produced. Current methods of airfoil optimization and validation typically involve computational fluid dynamics (CFD) and extensive wind tunnel testing with pressure sensors embedded into the airfoil to measure the pressure over the wing. Monitoring pressure along an airfoil in a wind tunnel is typically achieved using surface pressure taps that consist of hollow tubes running from the surface of the airfoil to individual pressure sensors external to the tunnel. These pressure taps are complex to configure and not ideal for in-flight testing. Fiber Bragg grating (FBG) pressure sensing arrays provide a highly viable option for both wind tunnel and inflight pressure measurement. We present a fiber optic sensor array that can detect positive and negative pressure suitable for validating CFD models of airfoil profile sections. The sensing array presented here consists of 6 independent sensing elements, each capable of a pressure resolution of less than 10 Pa over the range of 70 kPa to 120 kPa. The device has been tested with the sensor array attached to a 90mm chord length airfoil section subjected to low velocity flow. Results show that the arrays are capable of accurately detecting variations of the pressure profile along the airfoil as the angle of attack is varied from zero to the point at which stall occurs.

Solution for the nonuniformity correction of infrared focal plane arrays.

PubMed

Zhou, Huixin; Liu, Shangqian; Lai, Rui; Wang, Dabao; Cheng, Yubao

2005-05-20

Based on the S-curve model of the detector response of infrared focal plan arrays (IRFPAs), an improved two-point correction algorithm is presented. The algorithm first transforms the nonlinear image data into linear data and then uses the normal two-point algorithm to correct the linear data. The algorithm can effectively overcome the influence of nonlinearity of the detector's response, and it enlarges the correction precision and the dynamic range of the response. A real-time imaging-signal-processing system for IRFPAs that is based on a digital signal processor and field-programmable gate arrays is also presented. The nonuniformity correction capability of the presented solution is validated by experimental imaging procedures of a 128 x 128 pixel IRFPA camera prototype.

Atomic Oxygen Durability Testing of an International Space Station Solar Array Validation Coupon

NASA Technical Reports Server (NTRS)

Forkapa, Mark J.; Stidham, Curtis; Banks, Bruce A.; Rutledge, Sharon K.; Ma, David H.; Sechkar, Edward A.

1996-01-01

An International Space Station solar array validation coupon was exposed in a directed atomic oxygen beam for space environment durability testing at the NASA Lewis Research Center. Exposure to atomic oxygen and intermittent tensioning of the solar array were conducted to verify the solar array#s durability to low Earth orbital atomic oxygen and to the docking threat of plume loading both of which are anticipated over its expected mission life of fifteen years. The validation coupon was mounted on a specially designed rotisserie. The rotisserie mounting enabled the solar and anti-solar facing side of the array to be exposed to directed atomic oxygen in a sweeping arrival process replicating space exposure. The rotisserie mounting also enabled tensioning, in order to examine the durability of the array and its hinge to simulated plume loads. Flash testing to verify electrical performance of the solar array was performed with a solar simulator before and after the exposure to atomic oxygen and tensile loading. Results of the flash testing indicated little or no degradation in the solar array#s performance. Photographs were also taken of the array before and after the durability testing and are included along with comparisons and discussions in this report. The amount of atomic oxygen damage appeared minor with the exception of a very few isolated defects. There were also no indications that the simulated plume loadings had weakened or damaged the array, even though there was some erosion of Kapton due to atomic oxygen attack. Based on the results of this testing, it is apparent that the International Space Station#s solar arrays should survive the low Earth orbital atomic oxygen environment and docking threats which are anticipated over its expected mission life.

Design of an Improved Heater Array to Measure Microscale Wall Heat Transfer

NASA Technical Reports Server (NTRS)

Kim, Jungho; Chng, Choon Ping; Kalkur, T. S.

1996-01-01

An improved array of microscale heaters is being developed to measure the heat transfer coefficient at many points underneath individual bubbles during boiling as a function of space and time. This heater array enables the local heat transfer from a surface during the bubble growth and departure process to be measured with very high temporal and spatial resolution, and should allow better understanding of the boiling heat transfer mechanisms by pin-pointing when and where in the bubble departure cycle large amounts of wall heat transfer occur. Such information can provide much needed data regarding the important heat transfer mechanisms during the bubble departure cycle, and can serve as benchmarks to validate many of the analytical and numerical models used to simulate boiling. The improvements to the heater array include using a silicon-on-quartz substrate to reduce thermal cross-talk between the heaters, decreased space between the heaters, increased pad sizes on the heaters, and progressive heater sizes. Some results using the present heater array are discussed.

Location of high-frequency P wave microseismic noise in the Pacific Ocean using multiple small aperture arrays

DOE PAGES

Pyle, Moira L.; Koper, Keith D.; Euler, Garrett G.; ...

2015-04-20

We investigate source locations of P-wave microseisms within a narrow frequency band (0.67–1.33 Hz) that is significantly higher than the classic microseism band (~0.05–0.3 Hz). Employing a backprojection method, we analyze data recorded during January 2010 from five International Monitoring System arrays that border the Pacific Ocean. We develop a ranking scheme that allows us to combine beam power from multiple arrays to obtain robust locations of the microseisms. Some individual arrays exhibit a strong regional component, but results from the combination of all arrays show high-frequency P wave energy emanating from the North Pacific basin, in general agreement withmore » previous observations in the double-frequency (DF) microseism band (~0.1–0.3 Hz). This suggests that the North Pacific source of ambient P noise covers a broad range of frequencies and that the wave-wave interaction model is likely valid at shorter periods.« less

Aeroacoustic Validation of Installed Low Noise Propulsion for NASA's N+2 Supersonic Airliner

NASA Technical Reports Server (NTRS)

Bridges, James

2018-01-01

An aeroacoustic test was conducted at NASA Glenn Research Center on an integrated propulsion system designed to meet noise regulations of ICAO Chapter 4 with 10EPNdB cumulative margin. The test had two objectives: to demonstrate that the aircraft design did meet the noise goal, and to validate the acoustic design tools used in the design. Variations in the propulsion system design and its installation were tested and the results compared against predictions. Far-field arrays of microphones measured the acoustic spectral directivity, which was transformed to full scale as noise certification levels. Phased array measurements confirmed that the shielding of the installation model adequately simulated the full aircraft and provided data for validating RANS-based noise prediction tools. Particle image velocimetry confirmed that the flow field around the nozzle on the jet rig mimicked that of the full aircraft and produced flow data to validate the RANS solutions used in the noise predictions. The far-field acoustic measurements confirmed the empirical predictions for the noise. Results provided here detail the steps taken to ensure accuracy of the measurements and give insights into the physics of exhaust noise from installed propulsion systems in future supersonic vehicles.

The wave-field from an array of periodic emitters driven simultaneously by a broadband pulse.

PubMed

Dixon, Steve; Hill, Samuel; Fan, Yichao; Rowlands, George

2013-06-01

The use of phased array methods are commonplace in ultrasonic applications, where controlling the variation of the phase between the narrowband emitters in an array facilitates beam steering and focusing of ultrasonic waves. An approach is presented here whereby emitters of alternating polarity arranged in a one-dimensional array are pulsed simultaneously, and have sufficiently wide, controlled bandwidth to emit a two-dimensional wave. This pulsed approach provides a rapid means of simultaneously covering a region of space with a wave-front, whereby any wave that scatters or reflects off a body to a detector will have a distinct arrival time and frequency. This is a general wave phenomenon with a potential application in radar, sonar, and ultrasound. The key result is that one can obtain a smooth, continuous wave-front emitted from the array, over a large solid angle, whose frequency varies as a function of angle to the array. Analytic and finite element models created to describe this phenomenon have been validated with experimental results using ultrasonic waves in metal samples.

Optimizing fixed observational assets in a coastal observatory

NASA Astrophysics Data System (ADS)

Frolov, Sergey; Baptista, António; Wilkin, Michael

2008-11-01

Proliferation of coastal observatories necessitates an objective approach to managing of observational assets. In this article, we used our experience in the coastal observatory for the Columbia River estuary and plume to identify and address common problems in managing of fixed observational assets, such as salinity, temperature, and water level sensors attached to pilings and moorings. Specifically, we addressed the following problems: assessing the quality of an existing array, adding stations to an existing array, removing stations from an existing array, validating an array design, and targeting of an array toward data assimilation or monitoring. Our analysis was based on a combination of methods from oceanographic and statistical literature, mainly on the statistical machinery of the best linear unbiased estimator. The key information required for our analysis was the covariance structure for a field of interest, which was computed from the output of assimilated and non-assimilated models of the Columbia River estuary and plume. The network optimization experiments in the Columbia River estuary and plume proved to be successful, largely withstanding the scrutiny of sensitivity and validation studies, and hence providing valuable insight into optimization and operation of the existing observational network. Our success in the Columbia River estuary and plume suggest that algorithms for optimal placement of sensors are reaching maturity and are likely to play a significant role in the design of emerging ocean observatories, such as the United State's ocean observation initiative (OOI) and integrated ocean observing system (IOOS) observatories, and smaller regional observatories.

Short-Term Forecasts Using NU-WRF for the Winter Olympics 2018

NASA Technical Reports Server (NTRS)

Srikishen, Jayanthi; Case, Jonathan L.; Petersen, Walter A.; Iguchi, Takamichi; Tao, Wei-Kuo; Zavodsky, Bradley T.; Molthan, Andrew

2017-01-01

The NASA Unified-Weather Research and Forecasting model (NU-WRF) will be included for testing and evaluation in the forecast demonstration project (FDP) of the International Collaborative Experiment -PyeongChang 2018 Olympic and Paralympic (ICE-POP) Winter Games. An international array of radar and supporting ground based observations together with various forecast and now-cast models will be operational during ICE-POP. In conjunction with personnel from NASA's Goddard Space Flight Center, the NASA Short-term Prediction Research and Transition (SPoRT) Center is developing benchmark simulations for a real-time NU-WRF configuration to run during the FDP. ICE-POP observational datasets will be used to validate model simulations and investigate improved model physics and performance for prediction of snow events during the research phase (RDP) of the project The NU-WRF model simulations will also support NASA Global Precipitation Measurement (GPM) Mission ground-validation physical and direct validation activities in relation to verifying, testing and improving satellite-based snowfall retrieval algorithms over complex terrain.

Effects of Wave Energy Converter (WEC) Arrays on Wave, Current, and Sediment Circulation

NASA Astrophysics Data System (ADS)

Ruehl, K.; Roberts, J. D.; Jones, C.; Magalen, J.; James, S. C.

2012-12-01

The characterization of the physical environment and commensurate alteration of that environment due to Wave Energy Conversion (WEC) devices, or arrays of devices, must be understood to make informed device-performance predictions, specifications of hydrodynamic loads, and environmental evaluations of eco-system responses (e.g., changes to circulation patterns, sediment dynamics, and water quality). Hydrodynamic and sediment issues associated with performance of wave-energy devices will primarily be nearshore where WEC infrastructure (e.g., anchors, piles) are exposed to large forces from the surface-wave action and currents. Wave-energy devices will be subject to additional corrosion, fouling, and wear of moving parts caused by suspended sediments in the water column. The alteration of the circulation and sediment transport patterns may also alter local ecosystems through changes in benthic habitat, circulation patterns, or other environmental parameters. Sandia National Laboratories is developing tools and performing studies to quantitatively characterize the environments where WEC devices may be installed and to assess potential affects to hydrodynamics and local sediment transport. The primary tools are wave, hydrodynamic, and sediment transport models. To ensure confidence in the resulting evaluation of system-wide effects, the models are appropriately constrained and validated with measured data where available. An extension of the US EPA's EFDC code, SNL-EFDC, provides a suitable platform for modeling the necessary hydrodynamics;it has been modified to directly incorporate output from a SWAN wave model of the region. Model development and results are presented. In this work, a model is exercised for Monterey Bay, near Santa Cruz where a WEC array could be deployed. Santa Cruz is located on the northern coast of Monterey Bay, in Central California, USA. This site was selected for preliminary research due to the readily available historical hydrodynamic data (currents and wave heights, periods, and directions), sediment characterization data, and near-shore bathymetric data. In addition, the region has been under evaluation for future ocean energy projects. The modeling framework of SWAN and SNL-EFDC combined with field validation datasets allows for a robust quantitative description of the nearshore environment within which the MHK devices will be evaluated. This quantitative description can be directly incorporated into environmental impact assessments to eliminate guesswork related to the effects of the presence of large-scale arrays. These results can be used to design more efficient arrays while minimizing impacts on the nearshore environments. Further investigations into fine-scale scour near the structures will help determine if these large-scale results show that, in fact, there is deposition adjacent to the arrays, which could have design implications on anchorage and cabling systems.

Statistical Validation of a New Python-based Military Workforce Simulation Model

DTIC Science & Technology

2014-12-30

also having a straightforward syntax that is accessible to non-programmers. Furthermore, it is supported by an impressive variety of scientific... accessed by a given element of model logic or line of code. For example, in Arena, data arrays, queues and the simulation clock are part of the...global scope and are therefore accessible anywhere in the model. The disadvantage of scopes is that all names in a scope must be unique. If more than

Numerical Modeling and Experimental Validation by Calorimetric Detection of Energetic Materials Using Thermal Bimorph Microcantilever Array: A Case Study on Sensing Vapors of Volatile Organic Compounds (VOCs)

PubMed Central

Kang, Seok-Won; Fragala, Joe; Banerjee, Debjyoti

2015-01-01

Bi-layer (Au-Si3N4) microcantilevers fabricated in an array were used to detect vapors of energetic materials such as explosives under ambient conditions. The changes in the bending response of each thermal bimorph (i.e., microcantilever) with changes in actuation currents were experimentally monitored by measuring the angle of the reflected ray from a laser source used to illuminate the gold nanocoating on the surface of silicon nitride microcantilevers in the absence and presence of a designated combustible species. Experiments were performed to determine the signature response of this nano-calorimeter platform for each explosive material considered for this study. Numerical modeling was performed to predict the bending response of the microcantilevers for various explosive materials, species concentrations, and actuation currents. The experimental validation of the numerical predictions demonstrated that in the presence of different explosive or combustible materials, the microcantilevers exhibited unique trends in their bending responses with increasing values of the actuation current. PMID:26334276

A neighbor pixel communication filtering structure for Dynamic Vision Sensors

NASA Astrophysics Data System (ADS)

Xu, Yuan; Liu, Shiqi; Lu, Hehui; Zhang, Zilong

2017-02-01

For Dynamic Vision Sensors (DVS), thermal noise and junction leakage current induced Background Activity (BA) is the major cause of the deterioration of images quality. Inspired by the smoothing filtering principle of horizontal cells in vertebrate retina, A DVS pixel with Neighbor Pixel Communication (NPC) filtering structure is proposed to solve this issue. The NPC structure is designed to judge the validity of pixel's activity through the communication between its 4 adjacent pixels. The pixel's outputs will be suppressed if its activities are determined not real. The proposed pixel's area is 23.76×24.71μm2 and only 3ns output latency is introduced. In order to validate the effectiveness of the structure, a 5×5 pixel array has been implemented in SMIC 0.13μm CIS process. 3 test cases of array's behavioral model show that the NPC-DVS have an ability of filtering the BA.

Evaluation of high frequency ghost cavitation emissions for two different seismic air-gun arrays using numerical modelling

NASA Astrophysics Data System (ADS)

Khodabandeloo, Babak; Landrø, Martin

2017-04-01

Sound is deployed by marine mammals for variety of vital purposes such as finding food, communication, echolocation, etc. On the other hand human activities generate underwater noise. One major type of acoustic source is marine seismic acquisition which is carried out to image layers beneath the seabed exploiting reflected acoustic and elastic waves. Air-gun arrays are the most common and efficient marine seismic sources. Field measurements using broad band hydrophones have revealed that acoustic energies emitted by air-gun arrays contains frequencies from a few Hz up to tens of kHz. Frequencies below 200 Hz benefit seismic imaging and the rest is normally considered as wasted energy. On the other hand, the high frequency range (above 200 Hz) overlaps with hearing curves of many marine mammals and especially toothed whales and may have an impact on their behavior. A phenomenon called ghost cavitation is recently recognized to be responsible for a major part of these high frequencies (> 5 kHz). Acoustic pressure waves of individual air guns reflected from sea surface can cause the hydrostatic pressure to drop towards zero close to the source array. In these regions there is a high probability for water vapor cavity growth and subsequent collapse. We have simulated ghost cavitation cloud using numerical modelling and the results are validated by comparing with field measurements. The model is used to compare the amount of high frequency noise due to ghost cavitation for two different air gun arrays. Both of the arrays have three subarrays but the array distance for the one with 2730 in3 air volume is 6 meters and for the slightly bigger array (3250 in3 in air volume) the subarrays are separated by 8 meters. Simulation results indicate that the second array, despite larger subarray distance, generates stronger ghost cavitation signal.

A Voltammetric Electronic Tongue for the Resolution of Ternary Nitrophenol Mixtures

PubMed Central

González-Calabuig, Andreu; Cetó, Xavier

2018-01-01

This work reports the applicability of a voltammetric sensor array able to quantify the content of 2,4-dinitrophenol, 4-nitrophenol, and picric acid in artificial samples using the electronic tongue (ET) principles. The ET is based on cyclic voltammetry signals, obtained from an array of metal disk electrodes and a graphite epoxy composite electrode, compressed using discrete wavelet transform with chemometric tools such as artificial neural networks (ANNs). ANNs were employed to build the quantitative prediction model. In this manner, a set of standards based on a full factorial design, ranging from 0 to 300 mg·L−1, was prepared to build the model; afterward, the model was validated with a completely independent set of standards. The model successfully predicted the concentration of the three considered phenols with a normalized root mean square error of 0.030 and 0.076 for the training and test subsets, respectively, and r ≥ 0.948. PMID:29342848

IEA-Task 31 WAKEBENCH: Towards a protocol for wind farm flow model evaluation. Part 2: Wind farm wake models

NASA Astrophysics Data System (ADS)

Moriarty, Patrick; Sanz Rodrigo, Javier; Gancarski, Pawel; Chuchfield, Matthew; Naughton, Jonathan W.; Hansen, Kurt S.; Machefaux, Ewan; Maguire, Eoghan; Castellani, Francesco; Terzi, Ludovico; Breton, Simon-Philippe; Ueda, Yuko

2014-06-01

Researchers within the International Energy Agency (IEA) Task 31: Wakebench have created a framework for the evaluation of wind farm flow models operating at the microscale level. The framework consists of a model evaluation protocol integrated with a web-based portal for model benchmarking (www.windbench.net). This paper provides an overview of the building-block validation approach applied to wind farm wake models, including best practices for the benchmarking and data processing procedures for validation datasets from wind farm SCADA and meteorological databases. A hierarchy of test cases has been proposed for wake model evaluation, from similarity theory of the axisymmetric wake and idealized infinite wind farm, to single-wake wind tunnel (UMN-EPFL) and field experiments (Sexbierum), to wind farm arrays in offshore (Horns Rev, Lillgrund) and complex terrain conditions (San Gregorio). A summary of results from the axisymmetric wake, Sexbierum, Horns Rev and Lillgrund benchmarks are used to discuss the state-of-the-art of wake model validation and highlight the most relevant issues for future development.

Monitoring UV-induced signalling pathways in an ex vivo skin organ culture model using phospho-antibody array.

PubMed

Lenain, Christelle; Gamboa, Bastien; Perrin, Agnes; Séraïdaris, Alexia; Bertino, Béatrice; Rival, Yves; Bernardi, Mathieu; Piwnica, David; Méhul, Bruno

2018-05-01

We investigated UV-induced signalling in an ex vivo skin organ culture model using phospho-antibody array. Phosphorylation modulations were analysed in time-course experiments following exposure to solar-simulated UV and validated by Western blot analyses. We found that UV induced P-p38 and its substrates, P-ERK1/2 and P-AKT, which were previously shown to be upregulated by UV in cultured keratinocytes and in vivo human skin. This indicates that phospho-antibody array applied to ex vivo skin organ culture is a relevant experimental system to investigate signalling events following perturbations. As the identified proteins are components of pathways implicated in skin tumorigenesis, UV-exposed skin organ culture model could be used to investigate the effect on these pathways of NMSC cancer drug candidates. In addition, we found that phospho-HCK is induced upon UV exposure, producing a new candidate for future studies investigating its role in the skin response to UV and UV-induced carcinogenesis. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Attenuation Model Using the Large-N Array from the Source Physics Experiment

NASA Astrophysics Data System (ADS)

Atterholt, J.; Chen, T.; Snelson, C. M.; Mellors, R. J.

2017-12-01

The Source Physics Experiment (SPE) consists of a series of chemical explosions at the Nevada National Security Site. SPE seeks to better characterize the influence of subsurface heterogeneities on seismic wave propagation and energy dissipation from explosions. As a part of this experiment, SPE-5, a 5000 kg TNT equivalent chemical explosion, was detonated in 2016. During the SPE-5 experiment, a Large-N array of 996 geophones (half 3-component and half z-component) was deployed. This array covered an area that includes loosely consolidated alluvium (weak rock) and weathered granite (hard rock), and recorded the SPE-5 explosion as well as 53 weight drops. We use these Large-N recordings to develop an attenuation model of the area to better characterize how geologic structures influence source energy partitioning. We found a clear variation in seismic attenuation for different rock types: high attenuation (low Q) for alluvium and low attenuation (high Q) for granite. The attenuation structure correlates well with local geology, and will be incorporated into the large simulation effort of the SPE program to validate predictive models. (LA-UR-17-26382)

DSN Array Simulator

NASA Technical Reports Server (NTRS)

Tikidjian, Raffi; Mackey, Ryan

2008-01-01

The DSN Array Simulator (wherein 'DSN' signifies NASA's Deep Space Network) is an updated version of software previously denoted the DSN Receive Array Technology Assessment Simulation. This software (see figure) is used for computational modeling of a proposed DSN facility comprising user-defined arrays of antennas and transmitting and receiving equipment for microwave communication with spacecraft on interplanetary missions. The simulation includes variations in spacecraft tracked and communication demand changes for up to several decades of future operation. Such modeling is performed to estimate facility performance, evaluate requirements that govern facility design, and evaluate proposed improvements in hardware and/or software. The updated version of this software affords enhanced capability for characterizing facility performance against user-defined mission sets. The software includes a Monte Carlo simulation component that enables rapid generation of key mission-set metrics (e.g., numbers of links, data rates, and date volumes), and statistical distributions thereof as functions of time. The updated version also offers expanded capability for mixed-asset network modeling--for example, for running scenarios that involve user-definable mixtures of antennas having different diameters (in contradistinction to a fixed number of antennas having the same fixed diameter). The improved version also affords greater simulation fidelity, sufficient for validation by comparison with actual DSN operations and analytically predictable performance metrics.

In-Space Structural Validation Plan for a Stretched-Lens Solar Array Flight Experiment

NASA Technical Reports Server (NTRS)

Pappa, Richard S.; Woods-Vedeler, Jessica A.; Jones, Thomas W.

2001-01-01

This paper summarizes in-space structural validation plans for a proposed Space Shuttle-based flight experiment. The test article is an innovative, lightweight solar array concept that uses pop-up, refractive stretched-lens concentrators to achieve a power/mass density of at least 175 W/kg, which is more than three times greater than current capabilities. The flight experiment will validate this new technology to retire the risk associated with its first use in space. The experiment includes structural diagnostic instrumentation to measure the deployment dynamics, static shape, and modes of vibration of the 8-meter-long solar array and several of its lenses. These data will be obtained by photogrammetry using the Shuttle payload-bay video cameras and miniature video cameras on the array. Six accelerometers are also included in the experiment to measure base excitations and small-amplitude tip motions.

Modeling and characterization of multipath in global navigation satellite system ranging signals

NASA Astrophysics Data System (ADS)

Weiss, Jan Peter

The Global Positioning System (GPS) provides position, velocity, and time information to users in anywhere near the earth in real-time and regardless of weather conditions. Since the system became operational, improvements in many areas have reduced systematic errors affecting GPS measurements such that multipath, defined as any signal taking a path other than the direct, has become a significant, if not dominant, error source for many applications. This dissertation utilizes several approaches to characterize and model multipath errors in GPS measurements. Multipath errors in GPS ranging signals are characterized for several receiver systems and environments. Experimental P(Y) code multipath data are analyzed for ground stations with multipath levels ranging from minimal to severe, a C-12 turboprop, an F-18 jet, and an aircraft carrier. Comparisons between receivers utilizing single patch antennas and multi-element arrays are also made. In general, the results show significant reductions in multipath with antenna array processing, although large errors can occur even with this kind of equipment. Analysis of airborne platform multipath shows that the errors tend to be small in magnitude because the size of the aircraft limits the geometric delay of multipath signals, and high in frequency because aircraft dynamics cause rapid variations in geometric delay. A comprehensive multipath model is developed and validated. The model integrates 3D structure models, satellite ephemerides, electromagnetic ray-tracing algorithms, and detailed antenna and receiver models to predict multipath errors. Validation is performed by comparing experimental and simulated multipath via overall error statistics, per satellite time histories, and frequency content analysis. The validation environments include two urban buildings, an F-18, an aircraft carrier, and a rural area where terrain multipath dominates. The validated models are used to identify multipath sources, characterize signal properties, evaluate additional antenna and receiver tracking configurations, and estimate the reflection coefficients of multipath-producing surfaces. Dynamic models for an F-18 landing on an aircraft carrier correlate aircraft dynamics to multipath frequency content; the model also characterizes the separate contributions of multipath due to the aircraft, ship, and ocean to the overall error statistics. Finally, reflection coefficients for multipath produced by terrain are estimated via a least-squares algorithm.

Characterization of the Host Response to Pichinde Virus Infection in the Syrian Golden Hamster by Species-Specific Kinome Analysis*

PubMed Central

Falcinelli, Shane; Gowen, Brian B.; Trost, Brett; Napper, Scott; Kusalik, Anthony; Johnson, Reed F.; Safronetz, David; Prescott, Joseph; Wahl-Jensen, Victoria; Jahrling, Peter B.; Kindrachuk, Jason

2015-01-01

The Syrian golden hamster has been increasingly used to study viral hemorrhagic fever (VHF) pathogenesis and countermeasure efficacy. As VHFs are a global health concern, well-characterized animal models are essential for both the development of therapeutics and vaccines as well as for increasing our understanding of the molecular events that underlie viral pathogenesis. However, the paucity of reagents or platforms that are available for studying hamsters at a molecular level limits the ability to extract biological information from this important animal model. As such, there is a need to develop platforms/technologies for characterizing host responses of hamsters at a molecular level. To this end, we developed hamster-specific kinome peptide arrays to characterize the molecular host response of the Syrian golden hamster. After validating the functionality of the arrays using immune agonists of defined signaling mechanisms (lipopolysaccharide (LPS) and tumor necrosis factor (TNF)-α), we characterized the host response in a hamster model of VHF based on Pichinde virus (PICV1) infection by performing temporal kinome analysis of lung tissue. Our analysis revealed key roles for vascular endothelial growth factor (VEGF), interleukin (IL) responses, nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) signaling, and Toll-like receptor (TLR) signaling in the response to PICV infection. These findings were validated through phosphorylation-specific Western blot analysis. Overall, we have demonstrated that hamster-specific kinome arrays are a robust tool for characterizing the species-specific molecular host response in a VHF model. Further, our results provide key insights into the hamster host response to PICV infection and will inform future studies with high-consequence VHF pathogens. PMID:25573744

Energy Extraction from a Hypothetical MHK Array in a Section of the Mississippi River

NASA Astrophysics Data System (ADS)

Barco, J.; James, S. C.; Roberts, J. D.; Jones, C. A.; Jepsen, R. A.

2010-12-01

The world is facing many challenges meeting the energy demands for the future. Growing populations and developing economies as well as increasing energy expenditures highlight the need for a spectrum of energy sources. Concerns about pollution and climate change have led to increased interest in all forms of renewable energy to stabilize or decrease consumption of fossil fuels. One promising renewable is marine and hydrokinetic (MHK) energy, which has the potential to make important contributions to energy portfolios of the future. However, a primary question remains: How much energy can be extracted from MHK devices in rivers and oceans without significant environmental effects? This study focuses on the potential energy extraction from different hypothetical MHK array configurations in a section of the Mississippi River located near to Scotlandville Bend, Louisiana. Bathymetry data, obtained from Free Flow Power Corporation (FFP) via the US Army Corps bathymetry survey library, were interpolated onto a DELFT3D curvilinear, orthogonal grid of the system using ArcGIS 9.3.1. Boundary conditions are constrained by the upstream and downstream river flow rates and gage heights obtained from USGS website. Acoustic Doppler Current Profiler (ADCP) measurements obtained from FFP are used for pre-array model validation. Energy extraction is simulated using momentum sinks recently coded into SNL-EFDC, which is an augmented version of US EPA’s Environmental Fluid Dynamics Code (EFDC). SNL-EFDC model includes a new module which considers energy removal by MHK devices and commensurate changes to the turbulent kinetic energy and turbulent kinetic energy dissipation rate. As expected, average velocities decrease downstream of each MHK device due to energy extraction and blunt-body form drag from the MHK support structures. Changes in the flow field can alter sediment transport dynamics around and downstream of an MHK array; various hypothetical scenarios are examined. This study highlights concepts that should be considered when planning, designing, and optimizing MHK devices arrays in riverine resources. Future efforts will focus on validating and verifying these sorts of models as data become available.

Theoretical and Field Experimental Investigation of an Arrayed Solar Thermoelectric Flat-Plate Generator

NASA Astrophysics Data System (ADS)

Rehman, Naveed ur; Siddiqui, Mubashir Ali

2018-05-01

This work theoretically and experimentally investigated the performance of an arrayed solar flat-plate thermoelectric generator (ASFTEG). An analytical model, based on energy balances, was established for determining load voltage, power output and overall efficiency of ASFTEGs. An array consists of TEG devices (or modules) connected electrically in series and operating in closed-circuit mode with a load. The model takes into account the distinct temperature difference across each module, which is a major feature of this model. Parasitic losses have also been included in the model for realistic results. With the given set of simulation parameters, an ASFTEG consisting of four commercially available Bi2Te3 modules had a predicted load voltage of 200 mV and generated 3546 μW of electric power output. Predictions from the model were in good agreement with field experimental outcomes from a prototype ASFTEG, which was developed for validation purposes. Later, the model was simulated to maximize the performance of the ASFTEG by adjusting the thermal and electrical design of the system. Optimum values of design parameters were evaluated and discussed in detail. Beyond the current limitations associated with improvements in thermoelectric materials, this study will eventually lead to the successful development of portable roof-top renewable TEGs.

Cross-flow turbines: progress report on physical and numerical model studies at large laboratory scale

NASA Astrophysics Data System (ADS)

Wosnik, Martin; Bachant, Peter

2016-11-01

Cross-flow turbines show potential in marine hydrokinetic (MHK) applications. A research focus is on accurately predicting device performance and wake evolution to improve turbine array layouts for maximizing overall power output, i.e., minimizing wake interference, or taking advantage of constructive wake interaction. Experiments were carried with large laboratory-scale cross-flow turbines D O (1 m) using a turbine test bed in a large cross-section tow tank, designed to achieve sufficiently high Reynolds numbers for the results to be Reynolds number independent with respect to turbine performance and wake statistics, such that they can be reliably extrapolated to full scale and used for model validation. Several turbines of varying solidity were employed, including the UNH Reference Vertical Axis Turbine (RVAT) and a 1:6 scale model of the DOE-Sandia Reference Model 2 (RM2) turbine. To improve parameterization in array simulations, an actuator line model (ALM) was developed to provide a computationally feasible method for simulating full turbine arrays inside Navier-Stokes models. Results are presented for the simulation of performance and wake dynamics of cross-flow turbines and compared with experiments and body-fitted mesh, blade-resolving CFD. Supported by NSF-CBET Grant 1150797, Sandia National Laboratories.

The role of turbulent mixing in wind turbine wake recovery and wind array performance

NASA Astrophysics Data System (ADS)

Fruh, Wolf-Gerrit; Creech, Angus; Maguire, Eoghan

2014-05-01

The effect of wind turbine wakes in large offshore wind energy arrays can be a substantial factor in affecting the performance of turbines inside the array. Turbulent mixing plays a key role in the wake recovery, having a significant effect on the length over which the wake is strong enough to affect the performance other turbines significantly. We aim to highlight how turbulence affects wind turbine wakes, first by examining a high resolution CFD model of a single turbine wake validated by LIDAR measurements [1], and secondly with a much larger CFD simulation of Lillgrund offshore wind farm, validated with SCADA data [2]. By comparing the decay rates behind single turbines in environments of different surrounding surface features, ranging from ideal free-slip wind tunnels to mixed-vegetation hills, we suggest that the decay rate of turbine wakes are enhanced by free-stream turbulence, created by topography and ground features. In the context of Lillgrund wind farm, observations and computational results suggest that the wakes created by the turbines in the leading row facing the wind decay much slower than those in second row, or further into the turbine array. This observation can be explained by the diffusive action of upwind turbulence breaking up the wake generated by a turbine rotor. Angus CW Creech, Wolf-Gerrit Früh, Peter Clive (2012). Actuator volumes and hradaptive methods for threedimensional simulation of wind turbine wakes and performance. Wind Energy Vol.15, 847 - 863. Angus C.W. Creech, Wolf-Gerrit Früh, A. Eoghan Maguire (2013). High-resolution CFD modelling of Lillgrund Wind farm. Renewable Energies and Power Quality Journal, Vol. 11

Modeling and Simulation of Ceramic Arrays to Improve Ballistic Performance

DTIC Science & Technology

2014-03-01

30cal AP M2 Projectile, 762x39 PS Projectile, SPH , Aluminum 5083, SiC, DoP Expeminets, AutoDyn Sin 16. SECURITY CLASSIFICATION OF: UU a. REPORT b...projectile and are modeled using SPH elements in AutoDyn □ Center strike model validation runs with SiC tiles are conducted based on the DOP...Smoothed-particle hydrodynamics ( SPH ) used for all parts, SPH Size = 0.2 3 SiC and SiC 2 are identical in properties and dimensions

Physical and Numerical Model Studies of Cross-flow Turbines Towards Accurate Parameterization in Array Simulations

NASA Astrophysics Data System (ADS)

Wosnik, M.; Bachant, P.

2014-12-01

Cross-flow turbines, often referred to as vertical-axis turbines, show potential for success in marine hydrokinetic (MHK) and wind energy applications, ranging from small- to utility-scale installations in tidal/ocean currents and offshore wind. As turbine designs mature, the research focus is shifting from individual devices to the optimization of turbine arrays. It would be expensive and time-consuming to conduct physical model studies of large arrays at large model scales (to achieve sufficiently high Reynolds numbers), and hence numerical techniques are generally better suited to explore the array design parameter space. However, since the computing power available today is not sufficient to conduct simulations of the flow in and around large arrays of turbines with fully resolved turbine geometries (e.g., grid resolution into the viscous sublayer on turbine blades), the turbines' interaction with the energy resource (water current or wind) needs to be parameterized, or modeled. Models used today--a common model is the actuator disk concept--are not able to predict the unique wake structure generated by cross-flow turbines. This wake structure has been shown to create "constructive" interference in some cases, improving turbine performance in array configurations, in contrast with axial-flow, or horizontal axis devices. Towards a more accurate parameterization of cross-flow turbines, an extensive experimental study was carried out using a high-resolution turbine test bed with wake measurement capability in a large cross-section tow tank. The experimental results were then "interpolated" using high-fidelity Navier--Stokes simulations, to gain insight into the turbine's near-wake. The study was designed to achieve sufficiently high Reynolds numbers for the results to be Reynolds number independent with respect to turbine performance and wake statistics, such that they can be reliably extrapolated to full scale and used for model validation. The end product of this work will be a cross-flow turbine actuator line model to be used as an extension to the OpenFOAM computational fluid dynamics (CFD) software framework, which will likely require modifications to commonly-used dynamic stall models, in consideration of the turbines' high angle of attack excursions during normal operation.

Rigidizable Inflatable Get-Away-Special Experiment (RIGEX) Post Flight Analysis, Ground Testing, Modeling, and Future Applications

DTIC Science & Technology

2009-03-01

applications. RIGEX was an Air Force Institute of Technology graduate-student-built Space Shuttle cargo bay experiment intended to heat and inflate...suggestions for future experiments and applications are provided. RIGEX successfully accomplished its mission statement by validating the heating and...Inflatable/Rigidizable Solar Arrays . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17 2.6. RIGEX Student Involvement

Recent Survey and Application of the simSUNDT Software

NASA Astrophysics Data System (ADS)

Persson, G.; Wirdelius, H.

2010-02-01

The simSUNDT software is based on a previous developed program (SUNDT). The latest version has been customized in order to generate realistic synthetic data (including a grain noise model), compatible with a number of off-line analysis software. The software consists of a Windows®-based preprocessor and postprocessor together with a mathematical kernel (UTDefect), dealing with the actual mathematical modeling. The model employs various integral transforms and integral equation and enables simulations of the entire ultrasonic testing situation. The model is completely three-dimensional though the simulated component is two-dimensional, bounded by the scanning surface and a planar back surface as an option. It is of great importance that inspection methods that are applied are proper validated and that their capability of detection of cracks and defects are quantified. In order to achieve this, statistical methods such as Probability of Detection (POD) often are applied, with the ambition to estimate the detectability as a function of defect size. Despite the fact that the proposed procedure with the utilization of test pieces is very expensive, it also tends to introduce a number of possible misalignments between the actual NDT situation that is to be performed and the proposed experimental simulation. The presentation will describe the developed model that will enable simulation of a phased array NDT inspection and the ambition to use this simulation software to generate POD information. The paper also includes the most recent developments of the model including some initial experimental validation of the phased array probe model.

A Decade of Progress in Geophysical Acoustics (Invited)

NASA Astrophysics Data System (ADS)

Garces, M.

2009-12-01

In early 1999, there were very few infrasound programs worldwide, and no operational International Monitoring System (IMS) infrasound stations. The first modern arrays (IS26, Germany, and IS59, US) were still under construction. Limited data were available from prototype IMS arrays at Los Alamos, US, and Flers, France. “New” sensors were being developed, tested, and validated to meet the stringent IMS specifications. There were no operational source location algorithms and standard seasonal atmospheres were still being used for propagation modeling. The first IMS infrasound array (IS26) started sending data in October 1999, and was officially certified in April 10, 2001, with other IMS arrays following soon thereafter. However, by April 2001 there were enough uncertified infrasound stations operating around the Pacific basin to study the 4/23/01 meteor, which exploded at a height of ~30 km between Hawaii and California with an equivalent yield of ~10 kilotons. IMS arrays in Hawaii, Alaska, and California (the closest stations) were used to rapidly detect, locate, and characterize the explosion. Since this event was only captured by two monitoring technologies - infrasound and US satellites - the prompt and accurate identification of this sound source became a clarion call for the infrasound community. A growing number of case studies have encouraged steady progress in detection and location algorithms, and permitted the validation of incrementally refined atmospheric specifications and propagation models. Our physical understanding of the manifold natural and man-made processes that can create low-frequency sound has also flourished with the increasing number of students, scientists, and technologies dedicated to geoacoustic studies. At the time of this writing, over 2/3 of the 60-station infrasound array network of the IMS is operational, providing unprecedented global acoustic coverage. In addition, various countries have deployed infrasound sensing systems for scientific, natural hazard, and regional applications, providing denser coverage within regions of strategic importance. This presentation discusses some of the technological and scientific breakthroughs over the last decade that have broadened the range of expertise within our community and inspired new, exciting research directions in the vibrant field of geophysical acoustics.

Validation of finite element model of transcranial electrical stimulation using scalp potentials: implications for clinical dose

NASA Astrophysics Data System (ADS)

Datta, Abhishek; Zhou, Xiang; Su, Yuzhou; Parra, Lucas C.; Bikson, Marom

2013-06-01

Objective. During transcranial electrical stimulation, current passage across the scalp generates voltage across the scalp surface. The goal was to characterize these scalp voltages for the purpose of validating subject-specific finite element method (FEM) models of current flow. Approach. Using a recording electrode array, we mapped skin voltages resulting from low-intensity transcranial electrical stimulation. These voltage recordings were used to compare the predictions obtained from the high-resolution model based on the subject undergoing transcranial stimulation. Main results. Each of the four stimulation electrode configurations tested resulted in a distinct distribution of scalp voltages; these spatial maps were linear with applied current amplitude (0.1 to 1 mA) over low frequencies (1 to 10 Hz). The FEM model accurately predicted the distinct voltage distributions and correlated the induced scalp voltages with current flow through cortex. Significance. Our results provide the first direct model validation for these subject-specific modeling approaches. In addition, the monitoring of scalp voltages may be used to verify electrode placement to increase transcranial electrical stimulation safety and reproducibility.

Modeling Wildfire Hazard in the Western Hindu Kush-Himalayas

NASA Astrophysics Data System (ADS)

Bylow, D.

2012-12-01

Wildfire regimes are a leading driver of global environmental change affecting a diverse array of global ecosystems. Particulates and aerosols produced by wildfires are a primary source of air pollution making the early detection and monitoring of wildfires crucial. The objectives of this study were to model regional wildfire potential and identify environmental, topological, and sociological factors that contribute to the ignition of wildfire events in the Western Hindu Kush-Himalayas of South Asia. The environmental, topological, and sociological factors were used to model regional wildfire potential through multi-criteria evaluation using a method of weighted linear combination. Moderate Resolution Imaging Spectroradiometer (MODIS) and geographic information systems (GIS) data were integrated to analyze regional wildfires and construct the model. Model validation was performed using a holdout cross validation method. The study produced a significant model of wildfire potential in the Western Hindu Kush-Himalayas.; Western Hindu Kush-Himalayas ; Western Hindu Kush-Himalayas Wildfire Potential

Human eye-inspired soft optoelectronic device using high-density MoS2-graphene curved image sensor array.

PubMed

Choi, Changsoon; Choi, Moon Kee; Liu, Siyi; Kim, Min Sung; Park, Ok Kyu; Im, Changkyun; Kim, Jaemin; Qin, Xiaoliang; Lee, Gil Ju; Cho, Kyoung Won; Kim, Myungbin; Joh, Eehyung; Lee, Jongha; Son, Donghee; Kwon, Seung-Hae; Jeon, Noo Li; Song, Young Min; Lu, Nanshu; Kim, Dae-Hyeong

2017-11-21

Soft bioelectronic devices provide new opportunities for next-generation implantable devices owing to their soft mechanical nature that leads to minimal tissue damages and immune responses. However, a soft form of the implantable optoelectronic device for optical sensing and retinal stimulation has not been developed yet because of the bulkiness and rigidity of conventional imaging modules and their composing materials. Here, we describe a high-density and hemispherically curved image sensor array that leverages the atomically thin MoS 2 -graphene heterostructure and strain-releasing device designs. The hemispherically curved image sensor array exhibits infrared blindness and successfully acquires pixelated optical signals. We corroborate the validity of the proposed soft materials and ultrathin device designs through theoretical modeling and finite element analysis. Then, we propose the ultrathin hemispherically curved image sensor array as a promising imaging element in the soft retinal implant. The CurvIS array is applied as a human eye-inspired soft implantable optoelectronic device that can detect optical signals and apply programmed electrical stimulation to optic nerves with minimum mechanical side effects to the retina.

Simultaneous electrical recording of cardiac electrophysiology and contraction on chip

DOE PAGES

Qian, Fang; Huang, Chao; Lin, Yi-Dong; ...

2017-04-18

Prevailing commercialized cardiac platforms for in vitro drug development utilize planar microelectrode arrays to map action potentials, or impedance sensing to record contraction in real time, but cannot record both functions on the same chip with high spatial resolution. We report a novel cardiac platform that can record cardiac tissue adhesion, electrophysiology, and contractility on the same chip. The platform integrates two independent yet interpenetrating sensor arrays: a microelectrode array for field potential readouts and an interdigitated electrode array for impedance readouts. Together, these arrays provide real-time, non-invasive data acquisition of both cardiac electrophysiology and contractility under physiological conditions andmore » under drug stimuli. Furthermore, we cultured human induced pluripotent stem cell-derived cardiomyocytes as a model system, and used to validate the platform with an excitation–contraction decoupling chemical. Preliminary data using the platform to investigate the effect of the drug norepinephrine are combined with computational efforts. Finally, this platform provides a quantitative and predictive assay system that can potentially be used for comprehensive assessment of cardiac toxicity earlier in the drug discovery process.« less

Simultaneous electrical recording of cardiac electrophysiology and contraction on chip

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qian, Fang; Huang, Chao; Lin, Yi-Dong

Prevailing commercialized cardiac platforms for in vitro drug development utilize planar microelectrode arrays to map action potentials, or impedance sensing to record contraction in real time, but cannot record both functions on the same chip with high spatial resolution. We report a novel cardiac platform that can record cardiac tissue adhesion, electrophysiology, and contractility on the same chip. The platform integrates two independent yet interpenetrating sensor arrays: a microelectrode array for field potential readouts and an interdigitated electrode array for impedance readouts. Together, these arrays provide real-time, non-invasive data acquisition of both cardiac electrophysiology and contractility under physiological conditions andmore » under drug stimuli. Furthermore, we cultured human induced pluripotent stem cell-derived cardiomyocytes as a model system, and used to validate the platform with an excitation–contraction decoupling chemical. Preliminary data using the platform to investigate the effect of the drug norepinephrine are combined with computational efforts. Finally, this platform provides a quantitative and predictive assay system that can potentially be used for comprehensive assessment of cardiac toxicity earlier in the drug discovery process.« less

Three-Dimensionally Functionalized Reverse Phase Glycoprotein Array for Cancer Biomarker Discovery and Validation.

PubMed

Pan, Li; Aguilar, Hillary Andaluz; Wang, Linna; Iliuk, Anton; Tao, W Andy

2016-11-30

Glycoproteins have vast structural diversity that plays an important role in many biological processes and have great potential as disease biomarkers. Here, we report a novel functionalized reverse phase protein array (RPPA), termed polymer-based reverse phase glycoprotein array (polyGPA), to capture and profile glycoproteomes specifically, and validate glycoproteins. Nitrocellulose membrane functionalized with globular hydroxyaminodendrimers was used to covalently capture preoxidized glycans on glycoproteins from complex protein samples such as biofluids. The captured glycoproteins were subsequently detected using the same validated antibodies as in RPPA. We demonstrated the outstanding specificity, sensitivity, and quantitative capabilities of polyGPA by capturing and detecting purified as well as endogenous α-1-acid glycoprotein (AGP) in human plasma. We further applied quantitative N-glycoproteomics and the strategy to validate a panel of glycoproteins identified as potential biomarkers for bladder cancer by analyzing urine glycoproteins from bladder cancer patients or matched healthy individuals.

Analytical modeling of conformal mantle cloaks for cylindrical objects using sub-wavelength printed and slotted arrays

NASA Astrophysics Data System (ADS)

Padooru, Yashwanth R.; Yakovlev, Alexander B.; Chen, Pai-Yen; Alù, Andrea

2012-08-01

Following the idea of "cloaking by a surface" [A. Alù, Phys. Rev. B 80, 245115 (2009); P. Y. Chen and A. Alù, Phys. Rev. B 84, 205110 (2011)], we present a rigorous analytical model applicable to mantle cloaking of cylindrical objects using 1D and 2D sub-wavelength conformal frequency selective surface (FSS) elements. The model is based on Lorenz-Mie scattering theory which utilizes the two-sided impedance boundary conditions at the interface of the sub-wavelength elements. The FSS arrays considered in this work are composed of 1D horizontal and vertical metallic strips and 2D printed (patches, Jerusalem crosses, and cross dipoles) and slotted structures (meshes, slot-Jerusalem crosses, and slot-cross dipoles). It is shown that the analytical grid-impedance expressions derived for the planar arrays of sub-wavelength elements may be successfully used to model and tailor the surface reactance of cylindrical conformal mantle cloaks. By properly tailoring the surface reactance of the cloak, the total scattering from the cylinder can be significantly reduced, thus rendering the object invisible over the range of frequencies of interest (i.e., at microwaves and far-infrared). The results obtained using our analytical model for mantle cloaks are validated against full-wave numerical simulations.

Detection of small earthquakes with dense array data: example from the San Jacinto fault zone, southern California

NASA Astrophysics Data System (ADS)

Meng, Haoran; Ben-Zion, Yehuda

2018-01-01

We present a technique to detect small earthquakes not included in standard catalogues using data from a dense seismic array. The technique is illustrated with continuous waveforms recorded in a test day by 1108 vertical geophones in a tight array on the San Jacinto fault zone. Waveforms are first stacked without time-shift in nine non-overlapping subarrays to increase the signal-to-noise ratio. The nine envelope functions of the stacked records are then multiplied with each other to suppress signals associated with sources affecting only some of the nine subarrays. Running a short-term moving average/long-term moving average (STA/LTA) detection algorithm on the product leads to 723 triggers in the test day. Using a local P-wave velocity model derived for the surface layer from Betsy gunshot data, 5 s long waveforms of all sensors around each STA/LTA trigger are beamformed for various incident directions. Of the 723 triggers, 220 are found to have localized energy sources and 103 of these are confirmed as earthquakes by verifying their observation at 4 or more stations of the regional seismic network. This demonstrates the general validity of the method and allows processing further the validated events using standard techniques. The number of validated events in the test day is >5 times larger than that in the standard catalogue. Using these events as templates can lead to additional detections of many more earthquakes.

High-Speed Monitoring of Multiple Grid-Connected Photovoltaic Array Configurations and Supplementary Weather Station.

PubMed

Boyd, Matthew T

2017-06-01

Three grid-connected monocrystalline silicon photovoltaic arrays have been instrumented with research-grade sensors on the Gaithersburg, MD campus of the National Institute of Standards and Technology (NIST). These arrays range from 73 kW to 271 kW and have different tilts, orientations, and configurations. Irradiance, temperature, wind, and electrical measurements at the arrays are recorded, and images are taken of the arrays to monitor shading and capture any anomalies. A weather station has also been constructed that includes research-grade instrumentation to measure all standard meteorological quantities plus additional solar irradiance spectral bands, full spectrum curves, and directional components using multiple irradiance sensor technologies. Reference photovoltaic (PV) modules are also monitored to provide comprehensive baseline measurements for the PV arrays. Images of the whole sky are captured, along with images of the instrumentation and reference modules to document any obstructions or anomalies. Nearly, all measurements at the arrays and weather station are sampled and saved every 1s, with monitoring having started on Aug. 1, 2014. This report describes the instrumentation approach used to monitor the performance of these photovoltaic systems, measure the meteorological quantities, and acquire the images for use in PV performance and weather monitoring and computer model validation.

High-Speed Monitoring of Multiple Grid-Connected Photovoltaic Array Configurations and Supplementary Weather Station

PubMed Central

Boyd, Matthew T.

2017-01-01

Three grid-connected monocrystalline silicon photovoltaic arrays have been instrumented with research-grade sensors on the Gaithersburg, MD campus of the National Institute of Standards and Technology (NIST). These arrays range from 73 kW to 271 kW and have different tilts, orientations, and configurations. Irradiance, temperature, wind, and electrical measurements at the arrays are recorded, and images are taken of the arrays to monitor shading and capture any anomalies. A weather station has also been constructed that includes research-grade instrumentation to measure all standard meteorological quantities plus additional solar irradiance spectral bands, full spectrum curves, and directional components using multiple irradiance sensor technologies. Reference photovoltaic (PV) modules are also monitored to provide comprehensive baseline measurements for the PV arrays. Images of the whole sky are captured, along with images of the instrumentation and reference modules to document any obstructions or anomalies. Nearly, all measurements at the arrays and weather station are sampled and saved every 1s, with monitoring having started on Aug. 1, 2014. This report describes the instrumentation approach used to monitor the performance of these photovoltaic systems, measure the meteorological quantities, and acquire the images for use in PV performance and weather monitoring and computer model validation. PMID:28670044

Implementation issues of the nearfield equivalent source imaging microphone array

NASA Astrophysics Data System (ADS)

Bai, Mingsian R.; Lin, Jia-Hong; Tseng, Chih-Wen

2011-01-01

This paper revisits a nearfield microphone array technique termed nearfield equivalent source imaging (NESI) proposed previously. In particular, various issues concerning the implementation of the NESI algorithm are examined. The NESI can be implemented in both the time domain and the frequency domain. Acoustical variables including sound pressure, particle velocity, active intensity and sound power are calculated by using multichannel inverse filters. Issues concerning sensor deployment are also investigated for the nearfield array. The uniform array outperformed a random array previously optimized for far-field imaging, which contradicts the conventional wisdom in far-field arrays. For applications in which only a patch array with scarce sensors is available, a virtual microphone approach is employed to ameliorate edge effects using extrapolation and to improve imaging resolution using interpolation. To enhance the processing efficiency of the time-domain NESI, an eigensystem realization algorithm (ERA) is developed. Several filtering methods are compared in terms of computational complexity. Significant saving on computations can be achieved using ERA and the frequency-domain NESI, as compared to the traditional method. The NESI technique was also experimentally validated using practical sources including a 125 cc scooter and a wooden box model with a loudspeaker fitted inside. The NESI technique proved effective in identifying broadband and non-stationary sources produced by the sources.

Dimension-based attention in visual short-term memory.

PubMed

Pilling, Michael; Barrett, Doug J K

2016-07-01

We investigated how dimension-based attention influences visual short-term memory (VSTM). This was done through examining the effects of cueing a feature dimension in two perceptual comparison tasks (change detection and sameness detection). In both tasks, a memory array and a test array consisting of a number of colored shapes were presented successively, interleaved by a blank interstimulus interval (ISI). In Experiment 1 (change detection), the critical event was a feature change in one item across the memory and test arrays. In Experiment 2 (sameness detection), the critical event was the absence of a feature change in one item across the two arrays. Auditory cues indicated the feature dimension (color or shape) of the critical event with 80 % validity; the cues were presented either prior to the memory array, during the ISI, or simultaneously with the test array. In Experiment 1, the cue validity influenced sensitivity only when the cue was given at the earliest position; in Experiment 2, the cue validity influenced sensitivity at all three cue positions. We attributed the greater effectiveness of top-down guidance by cues in the sameness detection task to the more active nature of the comparison process required to detect sameness events (Hyun, Woodman, Vogel, Hollingworth, & Luck, Journal of Experimental Psychology: Human Perception and Performance, 35; 1140-1160, 2009).

Enhanced identification and biological validation of differential gene expression via Illumina whole-genome expression arrays through the use of the model-based background correction methodology

PubMed Central

Ding, Liang-Hao; Xie, Yang; Park, Seongmi; Xiao, Guanghua; Story, Michael D.

2008-01-01

Despite the tremendous growth of microarray usage in scientific studies, there is a lack of standards for background correction methodologies, especially in single-color microarray platforms. Traditional background subtraction methods often generate negative signals and thus cause large amounts of data loss. Hence, some researchers prefer to avoid background corrections, which typically result in the underestimation of differential expression. Here, by utilizing nonspecific negative control features integrated into Illumina whole genome expression arrays, we have developed a method of model-based background correction for BeadArrays (MBCB). We compared the MBCB with a method adapted from the Affymetrix robust multi-array analysis algorithm and with no background subtraction, using a mouse acute myeloid leukemia (AML) dataset. We demonstrated that differential expression ratios obtained by using the MBCB had the best correlation with quantitative RT–PCR. MBCB also achieved better sensitivity in detecting differentially expressed genes with biological significance. For example, we demonstrated that the differential regulation of Tnfr2, Ikk and NF-kappaB, the death receptor pathway, in the AML samples, could only be detected by using data after MBCB implementation. We conclude that MBCB is a robust background correction method that will lead to more precise determination of gene expression and better biological interpretation of Illumina BeadArray data. PMID:18450815

Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans.

PubMed

Haraksingh, Rajini R; Abyzov, Alexej; Urban, Alexander Eckehart

2017-04-24

High-resolution microarray technology is routinely used in basic research and clinical practice to efficiently detect copy number variants (CNVs) across the entire human genome. A new generation of arrays combining high probe densities with optimized designs will comprise essential tools for genome analysis in the coming years. We systematically compared the genome-wide CNV detection power of all 17 available array designs from the Affymetrix, Agilent, and Illumina platforms by hybridizing the well-characterized genome of 1000 Genomes Project subject NA12878 to all arrays, and performing data analysis using both manufacturer-recommended and platform-independent software. We benchmarked the resulting CNV call sets from each array using a gold standard set of CNVs for this genome derived from 1000 Genomes Project whole genome sequencing data. The arrays tested comprise both SNP and aCGH platforms with varying designs and contain between ~0.5 to ~4.6 million probes. Across the arrays CNV detection varied widely in number of CNV calls (4-489), CNV size range (~40 bp to ~8 Mbp), and percentage of non-validated CNVs (0-86%). We discovered strikingly strong effects of specific array design principles on performance. For example, some SNP array designs with the largest numbers of probes and extensive exonic coverage produced a considerable number of CNV calls that could not be validated, compared to designs with probe numbers that are sometimes an order of magnitude smaller. This effect was only partially ameliorated using different analysis software and optimizing data analysis parameters. High-resolution microarrays will continue to be used as reliable, cost- and time-efficient tools for CNV analysis. However, different applications tolerate different limitations in CNV detection. Our study quantified how these arrays differ in total number and size range of detected CNVs as well as sensitivity, and determined how each array balances these attributes. This analysis will inform appropriate array selection for future CNV studies, and allow better assessment of the CNV-analytical power of both published and ongoing array-based genomics studies. Furthermore, our findings emphasize the importance of concurrent use of multiple analysis algorithms and independent experimental validation in array-based CNV detection studies.

Validation of ISS Floating Potential Measurement Unit Electron Densities and Temperatures

NASA Technical Reports Server (NTRS)

Coffey, Victoria N.; Minow, Joseph I.; Parker, Linda N.; Bui, Them; Wright, Kenneth, Jr.; Koontz, Steven L.; Schneider, T.; Vaughn, J.; Craven, P.

2007-01-01

Validation of the Floating Potential Measurement Unit (FPMU) electron density and temperature measurements is an important step in the process of evaluating International Space Station spacecraft charging issues .including vehicle arcing and hazards to crew during extravehicular activities. The highest potentials observed on Space Station are due to the combined VxB effects on a large spacecraft and the collection of ionospheric electron and ion currents by the 160 V US solar array modules. Ionospheric electron environments are needed for input to the ISS spacecraft charging models used to predict the severity and frequency of occurrence of ISS charging hazards. Validation of these charging models requires comparing their predictions with measured FPMU values. Of course, the FPMU measurements themselves must also be validated independently for use in manned flight safety work. This presentation compares electron density and temperatures derived from the FPMU Langmuir probes and Plasma Impedance Probe against the independent density and temperature measurements from ultraviolet imagers, ground based incoherent scatter radar, and ionosonde sites.

Validation of the high-throughput marker technology DArT using the model plant Arabidopsis thaliana.

PubMed

Wittenberg, Alexander H J; van der Lee, Theo; Cayla, Cyril; Kilian, Andrzej; Visser, Richard G F; Schouten, Henk J

2005-08-01

Diversity Arrays Technology (DArT) is a microarray-based DNA marker technique for genome-wide discovery and genotyping of genetic variation. DArT allows simultaneous scoring of hundreds of restriction site based polymorphisms between genotypes and does not require DNA sequence information or site-specific oligonucleotides. This paper demonstrates the potential of DArT for genetic mapping by validating the quality and molecular basis of the markers, using the model plant Arabidopsis thaliana. Restriction fragments from a genomic representation of the ecotype Landsberg erecta (Ler) were amplified by PCR, individualized by cloning and spotted onto glass slides. The arrays were then hybridized with labeled genomic representations of the ecotypes Columbia (Col) and Ler and of individuals from an F(2) population obtained from a Col x Ler cross. The scoring of markers with specialized software was highly reproducible and 107 markers could unambiguously be ordered on a genetic linkage map. The marker order on the genetic linkage map coincided with the order on the DNA sequence map. Sequencing of the Ler markers and alignment with the available Col genome sequence confirmed that the polymorphism in DArT markers is largely a result of restriction site polymorphisms.

An orientation measurement method based on Hall-effect sensors for permanent magnet spherical actuators with 3D magnet array.

PubMed

Yan, Liang; Zhu, Bo; Jiao, Zongxia; Chen, Chin-Yin; Chen, I-Ming

2014-10-24

An orientation measurement method based on Hall-effect sensors is proposed for permanent magnet (PM) spherical actuators with three-dimensional (3D) magnet array. As there is no contact between the measurement system and the rotor, this method could effectively avoid friction torque and additional inertial moment existing in conventional approaches. Curved surface fitting method based on exponential approximation is proposed to formulate the magnetic field distribution in 3D space. The comparison with conventional modeling method shows that it helps to improve the model accuracy. The Hall-effect sensors are distributed around the rotor with PM poles to detect the flux density at different points, and thus the rotor orientation can be computed from the measured results and analytical models. Experiments have been conducted on the developed research prototype of the spherical actuator to validate the accuracy of the analytical equations relating the rotor orientation and the value of magnetic flux density. The experimental results show that the proposed method can measure the rotor orientation precisely, and the measurement accuracy could be improved by the novel 3D magnet array. The study result could be used for real-time motion control of PM spherical actuators.

Initial Results from the Floating Potential Measurement Unit aboard the International Space Station

NASA Technical Reports Server (NTRS)

Wright, Kenneth H., Jr.; Swenson, Charles; Thompson, Don; Barjatya, Aroh; Koontz, Steven L.; Schneider, Todd; Vaughn, Jason; Minow, Joseph; Craven, Paul; Coffey, Victoria;

Two-way and three-way approaches to ultra high performance liquid chromatography-photodiode array dataset for the quantitative resolution of a two-component mixture containing ciprofloxacin and ornidazole.

PubMed

Dinç, Erdal; Ertekin, Zehra Ceren; Büker, Eda

2016-09-01

Two-way and three-way calibration models were applied to ultra high performance liquid chromatography with photodiode array data with coeluted peaks in the same wavelength and time regions for the simultaneous quantitation of ciprofloxacin and ornidazole in tablets. The chromatographic data cube (tensor) was obtained by recording chromatographic spectra of the standard and sample solutions containing ciprofloxacin and ornidazole with sulfadiazine as an internal standard as a function of time and wavelength. Parallel factor analysis and trilinear partial least squares were used as three-way calibrations for the decomposition of the tensor, whereas three-way unfolded partial least squares was applied as a two-way calibration to the unfolded dataset obtained from the data array of ultra high performance liquid chromatography with photodiode array detection. The validity and ability of two-way and three-way analysis methods were tested by analyzing validation samples: synthetic mixture, interday and intraday samples, and standard addition samples. Results obtained from two-way and three-way calibrations were compared to those provided by traditional ultra high performance liquid chromatography. The proposed methods, parallel factor analysis, trilinear partial least squares, unfolded partial least squares, and traditional ultra high performance liquid chromatography were successfully applied to the quantitative estimation of the solid dosage form containing ciprofloxacin and ornidazole. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Spatial Language and the Embedded Listener Model in Parents’ Input to Children

PubMed Central

Ferrara, Katrina; Silva, Malena; Wilson, Colin; Landau, Barbara

2015-01-01

Language is a collaborative act: in order to communicate successfully, speakers must generate utterances that are not only semantically valid, but also sensitive to the knowledge state of the listener. Such sensitivity could reflect use of an “embedded listener model,” where speakers choose utterances on the basis of an internal model of the listeners’ conceptual and linguistic knowledge. In this paper, we ask whether parents’ spatial descriptions incorporate an embedded listener model that reflects their children’s understanding of spatial relations and spatial terms. Adults described the positions of targets in spatial arrays to their children or to the adult experimenter. Arrays were designed so that targets could not be identified unless spatial relationships within the array were encoded and described. Parents of 3–4 year-old children encoded relationships in ways that were well-matched to their children’s level of spatial language. These encodings differed from those of the same relationships in speech to the adult experimenter (Experiment 1). By contrast, parents of individuals with severe spatial impairments (Williams syndrome) did not show clear evidence of sensitivity to their children’s level of spatial language (Experiment 2). The results provide evidence for an embedded listener model in the domain of spatial language, and indicate conditions under which the ability to model listener knowledge may be more challenging. PMID:26717804

Spatial Language and the Embedded Listener Model in Parents' Input to Children.

PubMed

Ferrara, Katrina; Silva, Malena; Wilson, Colin; Landau, Barbara

2016-11-01

Language is a collaborative act: To communicate successfully, speakers must generate utterances that are not only semantically valid but also sensitive to the knowledge state of the listener. Such sensitivity could reflect the use of an "embedded listener model," where speakers choose utterances on the basis of an internal model of the listener's conceptual and linguistic knowledge. In this study, we ask whether parents' spatial descriptions incorporate an embedded listener model that reflects their children's understanding of spatial relations and spatial terms. Adults described the positions of targets in spatial arrays to their children or to the adult experimenter. Arrays were designed so that targets could not be identified unless spatial relationships within the array were encoded and described. Parents of 3-4-year-old children encoded relationships in ways that were well-matched to their children's level of spatial language. These encodings differed from those of the same relationships in speech to the adult experimenter (Experiment 1). In contrast, parents of individuals with severe spatial impairments (Williams syndrome) did not show clear evidence of sensitivity to their children's level of spatial language (Experiment 2). The results provide evidence for an embedded listener model in the domain of spatial language and indicate conditions under which the ability to model listener knowledge may be more challenging. Copyright © 2015 Cognitive Science Society, Inc.

Spectral ageing in the era of big data: integrated versus resolved models

NASA Astrophysics Data System (ADS)

Harwood, Jeremy J.

2017-04-01

Continuous injection models of spectral ageing have long been used to determine the age of radio galaxies from their integrated spectrum; however, many questions about their reliability remain unanswered. With various large area surveys imminent (e.g. LOw Frequency ARray, MeerKAT, Murchison Widefield Array) and planning for the next generation of radio interferometers are well underway (e.g. next generation VLA, Square Kilometre Array), investigations of radio galaxy physics are set to shift away from studies of individual sources to the population as a whole. Determining if and how integrated models of spectral ageing can be applied in the era of big data is therefore crucial. In this paper, I compare classical integrated models of spectral ageing to recent well-resolved studies that use modern analysis techniques on small spatial scales to determine their robustness and validity as a source selection method. I find that integrated models are unable to recover key parameters and, even when known a priori, provide a poor, frequency-dependent description of a source's spectrum. I show a disparity of up to a factor of 6 in age between the integrated and resolved methods but suggest, even with these inconsistencies, such models still provide a potential method of candidate selection in the search for remnant radio galaxies and in providing a cleaner selection of high redshift radio galaxies in z - α selected samples.

Equivalent-circuit model for stacked slot-based 2D periodic arrays of arbitrary geometry for broadband analysis

NASA Astrophysics Data System (ADS)

Astorino, Maria Denise; Frezza, Fabrizio; Tedeschi, Nicola

2018-03-01

The analysis of the transmission and reflection spectra of stacked slot-based 2D periodic structures of arbitrary geometry and the ability to devise and control their electromagnetic responses have been a matter of extensive research for many decades. The purpose of this paper is to develop an equivalent Π circuit model based on the transmission-line theory and Floquet harmonic interactions, for broadband and short longitudinal period analysis. The proposed circuit model overcomes the limits of identical and symmetrical configurations imposed by the even/odd excitation approach, exploiting both the circuit topology of a single 2D periodic array of apertures and the ABCD matrix formalism. The transmission spectra obtained through the equivalent-circuit model have been validated by comparison with full-wave simulations carried out with a finite-element commercial electromagnetic solver. This allowed for a physical insight into the spectral and angular responses of multilayer devices with arbitrary aperture shapes, guaranteeing a noticeable saving of computational resources.

Modeling and Simulation of Ceramic Arrays to Improve Ballistic Performance

DTIC Science & Technology

2014-04-30

experiments (tiles from Supplier, sintered SiC) 15. SUBJECT TERMS Adhesive Layer Effect, .30cal AP M2 Projectile, 762x39 PS Projectile, SPH , Aluminum...Aluminum (AI5083) □ Impacts by .30cal AP-M2 projectile and are modeled using SPH elements in AutoDyn □ Center strike model validation runs with SiC tiles...View SiC\\ Front View □ Smoothed-particle hydrodynamics ( SPH ) used for al parts J SPH Size 0.4 used initially □ SPH Size 0.2 used to capture

Can MODIS Data Calibrate and Validate Coastal Sediment Transport Models? Rapid Prototyping Using 250 m Data and the ECOMSED Model for Lake Pontchartrain, LA USA

NASA Technical Reports Server (NTRS)

Miller, Richard L.; Georgiou, Ioannis; Glorioso, Mark V.; McCorquodale, J. Alex; Crowder, Keely

2006-01-01

Field measurements from small boats and sparse arrays of instrumented buoys often do not provide sufficient data to capture the dynamic nature of biogeophysical parameters in may coastal aquatic environments. Several investigators have shown the MODIS 250 m images can provide daily synoptic views of suspended sediment concentration in coastal waters to determine sediment transport and fate. However, the use of MODIS for coastal environments can be limited due to a lack of cloud-free images. Sediment transport models are not constrained by sky conditions but often suffer from a lack of in situ observations for model calibration or validation. We demonstrate here the utility of MODIS 250 m to calibrate (set model parameters), validate output, and set or reset initial conditions of a hydrodynamic and sediment transport model (ECOMSED) developed for Lake Pontchartrain, LA USA. We present our approach in the context of how to quickly assess of 'prototype' an application of NASA data to support environmental managers and decision makers. The combination of daily MODIS imagery and model simulations offer a more robust monitoring and prediction system of suspended sediments than available from either system alone.

Constellations Solar Array Design, Industrialization And In-Flight Results

NASA Astrophysics Data System (ADS)

Combet, Yannick; Clapper, Paul

2011-10-01

Constellations has become a recurring opportunities in Thales Alenia Space since 3 majors programs had been awarded: Globalstar was the pathfinder with 48 flight sets followed by O3b with 8 an the latest is Iridium Next with 81 models. For these 3 programs, the Solar Array is fully developed, validated and produced by Thales Alenia Space with major subcontractors. This new segment of the activity leads to new development, design and industrialization approaches. This paper describes the Solar Array design and the alternative to current approach build and applied with the following drivers: - the low recurring cost and mass of the flight hardware, with particular attention on the Solar Array, - high robustness for system integration and in-orbit operations, - a long mission duration (typically 15 years in LEO) leading to take into account high number of thermal cycles (60 to 72.000 cycles), - new production concept with strict schedule management, - design segmented in subassemblies to reduce the integration time as well as a improved trouble shooting management, - delivery rate up to 1 wing per week and after learning curve effect, a integration duration divided by 3 compared to current production, - a delivery of a qualified PFM solar array in 22 months including the design to producibility constrains, This demanding requirement for delivery scheme and cost target did not jeopardize the requirements and standards for space application. After a brief description of the way the main drivers have been considered, the paper presents the main features and performances of the subsystem and shows the main validation test results. The first launch was successful in October 2010 and the first in-orbit results are presented.

Validation and optimization of SST k-ω turbulence model for pollutant dispersion within a building array

NASA Astrophysics Data System (ADS)

Yu, Hesheng; Thé, Jesse

2016-11-01

The prediction of the dispersion of air pollutants in urban areas is of great importance to public health, homeland security, and environmental protection. Computational Fluid Dynamics (CFD) emerges as an effective tool for pollutant dispersion modelling. This paper reports and quantitatively validates the shear stress transport (SST) k-ω turbulence closure model and its transitional variant for pollutant dispersion under complex urban environment for the first time. Sensitivity analysis is performed to establish recommendation for the proper use of turbulence models in urban settings. The current SST k-ω simulation is validated rigorously by extensive experimental data using hit rate for velocity components, and the "factor of two" of observations (FAC2) and fractional bias (FB) for concentration field. The simulation results show that current SST k-ω model can predict flow field nicely with an overall hit rate of 0.870, and concentration dispersion with FAC2 = 0.721 and FB = 0.045. The flow simulation of the current SST k-ω model is slightly inferior to that of a detached eddy simulation (DES), but better than that of standard k-ε model. However, the current study is the best among these three model approaches, when validated against measurements of pollutant dispersion in the atmosphere. This work aims to provide recommendation for proper use of CFD to predict pollutant dispersion in urban environment.

Impact imaging of aircraft composite structure based on a model-independent spatial-wavenumber filter.

PubMed

Qiu, Lei; Liu, Bin; Yuan, Shenfang; Su, Zhongqing

2016-01-01

The spatial-wavenumber filtering technique is an effective approach to distinguish the propagating direction and wave mode of Lamb wave in spatial-wavenumber domain. Therefore, it has been gradually studied for damage evaluation in recent years. But for on-line impact monitoring in practical application, the main problem is how to realize the spatial-wavenumber filtering of impact signal when the wavenumber of high spatial resolution cannot be measured or the accurate wavenumber curve cannot be modeled. In this paper, a new model-independent spatial-wavenumber filter based impact imaging method is proposed. In this method, a 2D cross-shaped array constructed by two linear piezoelectric (PZT) sensor arrays is used to acquire impact signal on-line. The continuous complex Shannon wavelet transform is adopted to extract the frequency narrowband signals from the frequency wideband impact response signals of the PZT sensors. A model-independent spatial-wavenumber filter is designed based on the spatial-wavenumber filtering technique. Based on the designed filter, a wavenumber searching and best match mechanism is proposed to implement the spatial-wavenumber filtering of the frequency narrowband signals without modeling, which can be used to obtain a wavenumber-time image of the impact relative to a linear PZT sensor array. By using the two wavenumber-time images of the 2D cross-shaped array, the impact direction can be estimated without blind angle. The impact distance relative to the 2D cross-shaped array can be calculated by using the difference of time-of-flight between the frequency narrowband signals of two different central frequencies and the corresponding group velocities. The validations performed on a carbon fiber composite laminate plate and an aircraft composite oil tank show a good impact localization accuracy of the model-independent spatial-wavenumber filter based impact imaging method. Copyright © 2015 Elsevier B.V. All rights reserved.

Synchronization sampling method based on delta-sigma analog-digital converter for underwater towed array system.

PubMed

Jiang, Jia-Jia; Duan, Fa-Jie; Li, Yan-Chao; Hua, Xiang-Ning

2014-03-01

Synchronization sampling is very important in underwater towed array system where every acquisition node (AN) samples analog signals by its own analog-digital converter (ADC). In this paper, a simple and effective synchronization sampling method is proposed to ensure synchronized operation among different ANs of the underwater towed array system. We first present a master-slave synchronization sampling model, and then design a high accuracy phase-locked loop to synchronize all delta-sigma ADCs to a reference clock. However, when the master-slave synchronization sampling model is used, both the time-delay (TD) of messages traveling along the wired transmission medium and the jitter of the clocks will bring out synchronization sampling error (SSE). Therefore, a simple method is proposed to estimate and compensate the TD of the messages transmission, and then another effective method is presented to overcome the SSE caused by the jitter of the clocks. An experimental system with three ANs is set up, and the related experimental results verify the validity of the synchronization sampling method proposed in this paper.

Synchronization sampling method based on delta-sigma analog-digital converter for underwater towed array system

NASA Astrophysics Data System (ADS)

Jiang, Jia-Jia; Duan, Fa-Jie; Li, Yan-Chao; Hua, Xiang-Ning

2014-03-01

Synchronization sampling is very important in underwater towed array system where every acquisition node (AN) samples analog signals by its own analog-digital converter (ADC). In this paper, a simple and effective synchronization sampling method is proposed to ensure synchronized operation among different ANs of the underwater towed array system. We first present a master-slave synchronization sampling model, and then design a high accuracy phase-locked loop to synchronize all delta-sigma ADCs to a reference clock. However, when the master-slave synchronization sampling model is used, both the time-delay (TD) of messages traveling along the wired transmission medium and the jitter of the clocks will bring out synchronization sampling error (SSE). Therefore, a simple method is proposed to estimate and compensate the TD of the messages transmission, and then another effective method is presented to overcome the SSE caused by the jitter of the clocks. An experimental system with three ANs is set up, and the related experimental results verify the validity of the synchronization sampling method proposed in this paper.

Testing space weather connections in the solar system

NASA Astrophysics Data System (ADS)

Grison, B.; Souček, J.; Krupař, V.; Píša, D.; Santolík, O.; Taubenschuss, U.; Němec, F.

2017-09-01

This study aims at testing and validating tools for prediction of the impact of solar events in the vicinity of inner and outer solar system planets using in-situ spacecraft data (primarily MESSENGER, STEREO and ACE, but also VEX and Cassini), remote Jovian observations (Hubble telescope, Nançay decametric array), existing catalogues (HELCATS and Tao et al. (2005)) and the tested propagating models (the ICME radial propagation tool of the CDPP and the 1-D MHD code propagation model presented in Tao et al. (2005)).

Fly's Eye GLM Simulator Preliminary Validation Analysis

NASA Astrophysics Data System (ADS)

Quick, M. G.; Christian, H. J., Jr.; Blakeslee, R. J.; Stewart, M. F.; Corredor, D.; Podgorny, S.

2017-12-01

As part of the validation effort for the Geostationary Lightning Mapper (GLM) an airborne radiometer array has been fabricated to observe lightning optical emission through the cloud top. The Fly's Eye GLM Simulator (FEGS) is a multi-spectral, photo-electric radiometer array with a nominal spatial resolution of 2 x 2 km and spatial footprint of 10 x 10 km at cloud top. A main 25 pixel array observes the 777.4 nm oxygen emission triplet using an optical passband filter with a 10 nm FWHM, a sampling rate of 100 kHz, and 16 bit resolution. From March to May of 2017 FEGS was flown on the NASA ER-2 high altitude aircraft during the GOES-R Validation Flight Campaign. Optical signatures of lightning were observed during a variety of thunderstorm scenarios while coincident measurements were obtained by GLM and ground based antennae networks. This presentation will describe the preliminary analysis of the FEGS dataset in the context of GLM validation.

Validation of MCNP: SPERT-D and BORAX-V fuel

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crawford, C.; Palmer, B.

1992-11-01

This report discusses critical experiments involving SPERT-D{sup 1,2} fuel elements and BORAX-V{sup 3-8} fuel which have been modeled and calculations performed with MCNP. MCNP is a Monte Carlo based transport code. For this study continuous-energy nuclear data from the ENDF/B-V cross section library was used. The SPERT-D experiments consisted of various arrays of fuel elements moderated and reflected with either water or a uranyl nitrate solution. Some SPERT-D experiments used cadmium as a fixed neutron poison, while others were poisoned with various concentrations of boron in the moderating/reflecting solution. ne BORAX-V experiments were arrays of either boiling fuel rod assembliesmore » or superheater assemblies, both types of arrays were moderated and reflected with water. In one boiling fuel experiment, two fuel rods were replaced with borated stainless steel poison rods.« less

Validation of MCNP: SPERT-D and BORAX-V fuel

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crawford, C.; Palmer, B.

1992-11-01

This report discusses critical experiments involving SPERT-D[sup 1,2] fuel elements and BORAX-V[sup 3-8] fuel which have been modeled and calculations performed with MCNP. MCNP is a Monte Carlo based transport code. For this study continuous-energy nuclear data from the ENDF/B-V cross section library was used. The SPERT-D experiments consisted of various arrays of fuel elements moderated and reflected with either water or a uranyl nitrate solution. Some SPERT-D experiments used cadmium as a fixed neutron poison, while others were poisoned with various concentrations of boron in the moderating/reflecting solution. ne BORAX-V experiments were arrays of either boiling fuel rod assembliesmore » or superheater assemblies, both types of arrays were moderated and reflected with water. In one boiling fuel experiment, two fuel rods were replaced with borated stainless steel poison rods.« less

Creation of a Human Secretome: A Novel Composite Library of Human Secreted Proteins: Validation Using Ovarian Cancer Gene Expression Data and a Virtual Secretome Array.

PubMed

Vathipadiekal, Vinod; Wang, Victoria; Wei, Wei; Waldron, Levi; Drapkin, Ronny; Gillette, Michael; Skates, Steven; Birrer, Michael

2015-11-01

To generate a comprehensive "Secretome" of proteins potentially found in the blood and derive a virtual Affymetrix array. To validate the utility of this database for the discovery of novel serum-based biomarkers using ovarian cancer transcriptomic data. The secretome was constructed by aggregating the data from databases of known secreted proteins, transmembrane or membrane proteins, signal peptides, G-protein coupled receptors, or proteins existing in the extracellular region, and the virtual array was generated by mapping them to Affymetrix probeset identifiers. Whole-genome microarray data from ovarian cancer, normal ovarian surface epithelium, and fallopian tube epithelium were used to identify transcripts upregulated in ovarian cancer. We established the secretome from eight public databases and a virtual array consisting of 16,521 Affymetrix U133 Plus 2.0 probesets. Using ovarian cancer transcriptomic data, we identified candidate blood-based biomarkers for ovarian cancer and performed bioinformatic validation by demonstrating rediscovery of known biomarkers including CA125 and HE4. Two novel top biomarkers (FGF18 and GPR172A) were validated in serum samples from an independent patient cohort. We present the secretome, comprising the most comprehensive resource available for protein products that are potentially found in the blood. The associated virtual array can be used to translate gene-expression data into cancer biomarker discovery. A list of blood-based biomarkers for ovarian cancer detection is reported and includes CA125 and HE4. FGF18 and GPR172A were identified and validated by ELISA as being differentially expressed in the serum of ovarian cancer patients compared with controls. ©2015 American Association for Cancer Research.

Aeroheating Thermal Analysis Methods for Aerobraking Mars Missions

NASA Technical Reports Server (NTRS)

Amundsen, Ruth M.; Dec, John A.; George, Benjamin E.

2002-01-01

Mars missions often employ aerobraking upon arrival at Mars as a low-mass method to gradually reduce the orbit period from a high-altitude, highly elliptical insertion orbit to the final science orbit. Two recent missions that made use of aerobraking were Mars Global Surveyor (MGS) and Mars Odyssey. Both spacecraft had solar arrays as the main aerobraking surface area. Aerobraking produces a high heat load on the solar arrays, which have a large surface area exposed to the airflow and relatively low mass. To accurately model the complex behavior during aerobraking, the thermal analysis must be tightly coupled to the flight mechanics, aerodynamics, and atmospheric modeling efforts being performed during operations. To properly represent the temperatures prior to and during the drag pass, the model must include the orbital solar and planetary heat fluxes. The correlation of the thermal model to flight data allows a validation of the modeling process, as well as information on what processes dominate the thermal behavior. This paper describes the thermal modeling method that was developed for this purpose, as well as correlation for two flight missions, and a discussion of improvements to the methodology.

Reference Model MHK Turbine Array Optimization Study within a Generic River System.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Erick; Barco Mugg, Janet; James, Scott

2011-12-01

Increasing interest in marine hydrokinetic (MHK) energy has spurred to significant research on optimal placement of emerging technologies to maximize energy conversion and minimize potential effects on the environment. However, these devices will be deployed as an array in order to reduce the cost of energy and little work has been done to understand the impact these arrays will have on the flow dynamics, sediment-bed transport and benthic habitats and how best to optimize these arrays for both performance and environmental considerations. An "MHK-friendly" routine has been developed and implemented by Sandia National Laboratories (SNL) into the flow, sediment dynamicsmore » and water-quality code, SNL-EFDC. This routine has been verified and validated against three separate sets of experimental data. With SNL-EFDC, water quality and array optimization studies can be carried out to optimize an MHK array in a resource and study its effects on the environment. The present study examines the effect streamwise and spanwise spacing has on the array performance. Various hypothetical MHK array configurations are simulated within a trapezoidal river channel. Results show a non-linear increase in array-power efficiency as turbine spacing is increased in each direction, which matches the trends seen experimentally. While the sediment transport routines were not used in these simulations, the flow acceleration seen around the MHK arrays has the potential to significantly affect the sediment transport characteristics and benthic habitat of a resource. Evaluation Only. Created with Aspose.Pdf.Kit. Copyright 2002-2011 Aspose Pty Ltd Evaluation Only. Created with Aspose.Pdf.Kit. Copyright 2002-2011 Aspose Pty Ltd« less

Validation of RNAi Silencing Efficiency Using Gene Array Data shows 18.5% Failure Rate across 429 Independent Experiments.

PubMed

Munkácsy, Gyöngyi; Sztupinszki, Zsófia; Herman, Péter; Bán, Bence; Pénzváltó, Zsófia; Szarvas, Nóra; Győrffy, Balázs

2016-09-27

No independent cross-validation of success rate for studies utilizing small interfering RNA (siRNA) for gene silencing has been completed before. To assess the influence of experimental parameters like cell line, transfection technique, validation method, and type of control, we have to validate these in a large set of studies. We utilized gene chip data published for siRNA experiments to assess success rate and to compare methods used in these experiments. We searched NCBI GEO for samples with whole transcriptome analysis before and after gene silencing and evaluated the efficiency for the target and off-target genes using the array-based expression data. Wilcoxon signed-rank test was used to assess silencing efficacy and Kruskal-Wallis tests and Spearman rank correlation were used to evaluate study parameters. All together 1,643 samples representing 429 experiments published in 207 studies were evaluated. The fold change (FC) of down-regulation of the target gene was above 0.7 in 18.5% and was above 0.5 in 38.7% of experiments. Silencing efficiency was lowest in MCF7 and highest in SW480 cells (FC = 0.59 and FC = 0.30, respectively, P = 9.3E-06). Studies utilizing Western blot for validation performed better than those with quantitative polymerase chain reaction (qPCR) or microarray (FC = 0.43, FC = 0.47, and FC = 0.55, respectively, P = 2.8E-04). There was no correlation between type of control, transfection method, publication year, and silencing efficiency. Although gene silencing is a robust feature successfully cross-validated in the majority of experiments, efficiency remained insufficient in a significant proportion of studies. Selection of cell line model and validation method had the highest influence on silencing proficiency.

A brief overview of compartmental modeling for intake of plutonium via wounds

DOE PAGES

Poudel, Deepesh; Klumpp, John Allan; Waters, Tom L.; ...

2017-06-07

Here, the aim of this study is to present several approaches that have been used to model the behavior of radioactive materials (specifically Pu) in contaminated wounds. We also review some attempts by the health physics community to validate and revise the National Council on Radiation Protection and Measurements (NCRP) 156 biokinetic model for wounds, and present some general recommendations based on the review. Modeling of intake via the wound pathway is complicated because of a large array of wound characteristics (e.g. solubility and chemistry of the material, type and depth of the tissue injury, anatomical location of injury). Moreover,more » because a majority of the documented wound cases in humans are medically treated (excised or treated with chelation), the data to develop biokinetic models for unperturbed wound exposures are limited. Since the NCRP wound model was largely developed from animal data, it is important to continue to validate and improve the model using human data whenever plausible.« less

Code-modulated interferometric imaging system using phased arrays

NASA Astrophysics Data System (ADS)

Chauhan, Vikas; Greene, Kevin; Floyd, Brian

2016-05-01

Millimeter-wave (mm-wave) imaging provides compelling capabilities for security screening, navigation, and bio- medical applications. Traditional scanned or focal-plane mm-wave imagers are bulky and costly. In contrast, phased-array hardware developed for mass-market wireless communications and automotive radar promise to be extremely low cost. In this work, we present techniques which can allow low-cost phased-array receivers to be reconfigured or re-purposed as interferometric imagers, removing the need for custom hardware and thereby reducing cost. Since traditional phased arrays power combine incoming signals prior to digitization, orthogonal code-modulation is applied to each incoming signal using phase shifters within each front-end and two-bit codes. These code-modulated signals can then be combined and processed coherently through a shared hardware path. Once digitized, visibility functions can be recovered through squaring and code-demultiplexing operations. Pro- vided that codes are selected such that the product of two orthogonal codes is a third unique and orthogonal code, it is possible to demultiplex complex visibility functions directly. As such, the proposed system modulates incoming signals but demodulates desired correlations. In this work, we present the operation of the system, a validation of its operation using behavioral models of a traditional phased array, and a benchmarking of the code-modulated interferometer against traditional interferometer and focal-plane arrays.

A Novel Noncircular MUSIC Algorithm Based on the Concept of the Difference and Sum Coarray.

PubMed

Chen, Zhenhong; Ding, Yingtao; Ren, Shiwei; Chen, Zhiming

2018-01-25

In this paper, we propose a vectorized noncircular MUSIC (VNCM) algorithm based on the concept of the coarray, which can construct the difference and sum (diff-sum) coarray, for direction finding of the noncircular (NC) quasi-stationary sources. Utilizing both the NC property and the concept of the Khatri-Rao product, the proposed method can be applied to not only the ULA but also sparse arrays. In addition, we utilize the quasi-stationary characteristic instead of the spatial smoothing method to solve the coherent issue generated by the Khatri-Rao product operation so that the available degree of freedom (DOF) of the constructed virtual array will not be reduced by half. Compared with the traditional NC virtual array obtained in the NC MUSIC method, the diff-sum coarray achieves a higher number of DOFs as it comprises both the difference set and the sum set. Due to the complementarity between the difference set and the sum set for the coprime array, we choose the coprime array with multiperiod subarrays (CAMpS) as the array model and summarize the properties of the corresponding diff-sum coarray. Furthermore, we develop a diff-sum coprime array with multiperiod subarrays (DsCAMpS) whose diff-sum coarray has a higher DOF. Simulation results validate the effectiveness of the proposed method and the high DOF of the diff-sum coarray.

A Novel Noncircular MUSIC Algorithm Based on the Concept of the Difference and Sum Coarray

PubMed Central

Chen, Zhenhong; Ding, Yingtao; Chen, Zhiming

2018-01-01

In this paper, we propose a vectorized noncircular MUSIC (VNCM) algorithm based on the concept of the coarray, which can construct the difference and sum (diff–sum) coarray, for direction finding of the noncircular (NC) quasi-stationary sources. Utilizing both the NC property and the concept of the Khatri–Rao product, the proposed method can be applied to not only the ULA but also sparse arrays. In addition, we utilize the quasi-stationary characteristic instead of the spatial smoothing method to solve the coherent issue generated by the Khatri–Rao product operation so that the available degree of freedom (DOF) of the constructed virtual array will not be reduced by half. Compared with the traditional NC virtual array obtained in the NC MUSIC method, the diff–sum coarray achieves a higher number of DOFs as it comprises both the difference set and the sum set. Due to the complementarity between the difference set and the sum set for the coprime array, we choose the coprime array with multiperiod subarrays (CAMpS) as the array model and summarize the properties of the corresponding diff–sum coarray. Furthermore, we develop a diff–sum coprime array with multiperiod subarrays (DsCAMpS) whose diff–sum coarray has a higher DOF. Simulation results validate the effectiveness of the proposed method and the high DOF of the diff–sum coarray. PMID:29370138

Classifying lower grade glioma cases according to whole genome gene expression.

PubMed

Chen, Baoshi; Liang, Tingyu; Yang, Pei; Wang, Haoyuan; Liu, Yanwei; Yang, Fan; You, Gan

2016-11-08

To identify a gene-based signature as a novel prognostic model in lower grade gliomas. A gene signature developed from HOXA7, SLC2A4RG and MN1 could segregate patients into low and high risk score groups with different overall survival (OS), and was validated in TCGA RNA-seq and GSE16011 mRNA array datasets. Receiver operating characteristic (ROC) was performed to show that the three-gene signature was more sensitive and specific than histology, grade, age, IDH1 mutation and 1p/19q co-deletion. Gene Set Enrichment Analysis (GSEA) and GO analysis showed high-risk samples were associated with tumor associated macrophages (TAMs) and highly invasive phenotypes. Moreover, HOXA7-siRNA inhibited migration and invasion in vitro, and downregulated MMP9 at the protein level in U251 glioma cells. A cohort of 164 glioma specimens from the Chinese Glioma Genome Atlas (CGGA) array database were assessed as the training group. TCGA RNA-seq and GSE16011 mRNA array datasets were used for validation. Regression analyses and linear risk score assessment were performed for the identification of the three-gene signature comprising HOXA7, SLC2A4RG and MN1. We established a three-gene signature for lower grade gliomas, which could independently predict overall survival (OS) of lower grade glioma patients with higher sensitivity and specificity compared with other clinical characteristics. These findings indicate that the three-gene signature is a new prognostic model that could provide improved OS prediction and accurate therapies for lower grade glioma patients.

Experimental Validation of a Fast Forward Model for Guided Wave Tomography of Pipe Elbows.

PubMed

Brath, Alex J; Simonetti, Francesco; Nagy, Peter B; Instanes, Geir

2017-05-01

Ultrasonic guided wave tomography (GWT) methods for the detection of corrosion and erosion damage in straight pipe sections are now well advanced. However, successful application of GWT to pipe bends has not yet been demonstrated due to the computational burden associated with the complex forward model required to simulate guided wave propagation through the bend. In a previous paper [Brath et al., IEEE Trans. Ultrason., Ferroelectr., Freq. Control, vol. 61, pp. 815-829, 2014], we have shown that the speed of the forward model can be increased by replacing the 3-D pipe bend with a 2-D rectangular domain in which guided wave propagation is formulated based on an artificially inhomogeneous and elliptically anisotropic (INELAN) acoustic model. This paper provides further experimental validation of the INLEAN model by studying the traveltime shifts caused by the introduction of shallow defects on the elbow of a pipe bend. Comparison between experiments and simulations confirms that a defect can be modeled as a phase velocity perturbation to the INLEAN velocity field with accuracy that is within the experimental error of the measurements. In addition, it is found that the sensitivity of traveltime measurements to the presence of damage decreases as the damage position moves from the interior side of the bend (intrados) to the exterior one (extrados). This effect is due to the nonuniform ray coverage obtainable when transmitting the guided wave signals with one ring array of sources on one side of the elbow and receiving with a second array on the other side.

Thermal-Mechanical Noise Based CMUT Characterization and Sensing

PubMed Central

Gurun, Gokce; Hochman, Michael; Hasler, Paul; Degertekin, F. Levent

2012-01-01

When capacitive micromachined ultrasonic transducers (CMUTs) are monolithically integrated with custom-designed low-noise electronics, the output noise of the system can be dominated by the CMUT thermal-mechanical noise both in air and in immersion even for devices with low capacitance. Since the thermal-mechanical noise can be related to the electrical admittance of the CMUTs, this provides an effective means of device characterization. This approach yields a novel method to test the functionality and uniformity of CMUT arrays and the integrated electronics where a direct connection to CMUT array element terminals is not available. These measurements can be performed in air at the wafer level, suitable for batch manufacturing and testing. We demonstrate this method on the elements of an 800-μm diameter CMUT-on-CMOS array designed for intravascular imaging in the 10-20 MHz range. Noise measurements in air show the expected resonance behavior and spring softening effects. Noise measurements in immersion for the same array provide useful information on both the acoustic cross talk and radiation properties of the CMUT array elements. The good agreement between a CMUT model based on finite difference and boundary element method and the noise measurements validates the model and indicates that the output noise is indeed dominated by thermal-mechanical noise. The measurement method can be exploited to implement CMUT based passive sensors to measure immersion medium properties, or other parameters affecting the electro-mechanics of the CMUT structure. PMID:22718877

Thermal-mechanical-noise-based CMUT characterization and sensing.

PubMed

Gurun, Gokce; Hochman, Michael; Hasler, Paul; Degertekin, F Levent

2012-06-01

When capacitive micromachined ultrasonic transducers (CMUTs) are monolithically integrated with custom-designed low-noise electronics, the output noise of the system can be dominated by the CMUT thermal-mechanical noise both in air and in immersion even for devices with low capacitance. Because the thermal-mechanical noise can be related to the electrical admittance of the CMUTs, this provides an effective means of device characterization. This approach yields a novel method to test the functionality and uniformity of CMUT arrays and the integrated electronics when a direct connection to CMUT array element terminals is not available. Because these measurements can be performed in air at the wafer level, the approach is suitable for batch manufacturing and testing. We demonstrate this method on the elements of an 800-μm-diameter CMUT-on-CMOS array designed for intravascular imaging in the 10 to 20 MHz range. Noise measurements in air show the expected resonance behavior and spring softening effects. Noise measurements in immersion for the same array provide useful information on both the acoustic cross talk and radiation properties of the CMUT array elements. The good agreement between a CMUT model based on finite difference and boundary element methods and the noise measurements validates the model and indicates that the output noise is indeed dominated by thermal-mechanical noise. The measurement method can be exploited to implement CMUT-based passive sensors to measure immersion medium properties, or other parameters affecting the electro-mechanics of the CMUT structure.

A random variance model for detection of differential gene expression in small microarray experiments.

PubMed

Wright, George W; Simon, Richard M

2003-12-12

Microarray techniques provide a valuable way of characterizing the molecular nature of disease. Unfortunately expense and limited specimen availability often lead to studies with small sample sizes. This makes accurate estimation of variability difficult, since variance estimates made on a gene by gene basis will have few degrees of freedom, and the assumption that all genes share equal variance is unlikely to be true. We propose a model by which the within gene variances are drawn from an inverse gamma distribution, whose parameters are estimated across all genes. This results in a test statistic that is a minor variation of those used in standard linear models. We demonstrate that the model assumptions are valid on experimental data, and that the model has more power than standard tests to pick up large changes in expression, while not increasing the rate of false positives. This method is incorporated into BRB-ArrayTools version 3.0 (http://linus.nci.nih.gov/BRB-ArrayTools.html). ftp://linus.nci.nih.gov/pub/techreport/RVM_supplement.pdf

CMOS array design automation techniques. [metal oxide semiconductors

NASA Technical Reports Server (NTRS)

Ramondetta, P.; Feller, A.; Noto, R.; Lombardi, T.

1975-01-01

A low cost, quick turnaround technique for generating custom metal oxide semiconductor arrays using the standard cell approach was developed, implemented, tested and validated. Basic cell design topology and guidelines are defined based on an extensive analysis that includes circuit, layout, process, array topology and required performance considerations particularly high circuit speed.

Ultrasonic simulation—Imagine3D and SimScan: Tools to solve the inverse problem for complex turbine components

NASA Astrophysics Data System (ADS)

Mair, H. D.; Ciorau, P.; Owen, D.; Hazelton, T.; Dunning, G.

2000-05-01

Two ultrasonic simulation packages: Imagine 3D and SIMSCAN have specifically been developed to solve the inverse problem for blade root and rotor steeple of low-pressure turbine. The software was integrated with the 3D drawing of the inspected parts, and with the dimensions of linear phased-array probes. SIMSCAN simulates the inspection scenario in both optional conditions: defect location and probe movement/refracted angle range. The results are displayed into Imagine 3-D, with a variety of options: rendering, display 1:1, grid, generated UT beam. The results are very useful for procedure developer, training and to optimize the phased-array probe inspection sequence. A spreadsheet is generated to correlate the defect coordinates with UT data (probe position, skew and refracted angle, UT path, and probe movement). The simulation models were validated during experimental work with phased-array systems. The accuracy in probe position is ±1 mm, and the refracted/skew angle is within ±0.5°. Representative examples of phased array focal laws/probe movement for a specific defect location, are also included.

Spatial sound field synthesis and upmixing based on the equivalent source method.

PubMed

Bai, Mingsian R; Hsu, Hoshen; Wen, Jheng-Ciang

2014-01-01

Given scarce number of recorded signals, spatial sound field synthesis with an extended sweet spot is a challenging problem in acoustic array signal processing. To address the problem, a synthesis and upmixing approach inspired by the equivalent source method (ESM) is proposed. The synthesis procedure is based on the pressure signals recorded by a microphone array and requires no source model. The array geometry can also be arbitrary. Four upmixing strategies are adopted to enhance the resolution of the reproduced sound field when there are more channels of loudspeakers than the microphones. Multi-channel inverse filtering with regularization is exploited to deal with the ill-posedness in the reconstruction process. The distance between the microphone and loudspeaker arrays is optimized to achieve the best synthesis quality. To validate the proposed system, numerical simulations and subjective listening experiments are performed. The results demonstrated that all upmixing methods improved the quality of reproduced target sound field over the original reproduction. In particular, the underdetermined ESM interpolation method yielded the best spatial sound field synthesis in terms of the reproduction error, timbral quality, and spatial quality.

Validation of a common data model for active safety surveillance research

PubMed Central

Ryan, Patrick B; Reich, Christian G; Hartzema, Abraham G; Stang, Paul E

2011-01-01

Objective Systematic analysis of observational medical databases for active safety surveillance is hindered by the variation in data models and coding systems. Data analysts often find robust clinical data models difficult to understand and ill suited to support their analytic approaches. Further, some models do not facilitate the computations required for systematic analysis across many interventions and outcomes for large datasets. Translating the data from these idiosyncratic data models to a common data model (CDM) could facilitate both the analysts' understanding and the suitability for large-scale systematic analysis. In addition to facilitating analysis, a suitable CDM has to faithfully represent the source observational database. Before beginning to use the Observational Medical Outcomes Partnership (OMOP) CDM and a related dictionary of standardized terminologies for a study of large-scale systematic active safety surveillance, the authors validated the model's suitability for this use by example. Validation by example To validate the OMOP CDM, the model was instantiated into a relational database, data from 10 different observational healthcare databases were loaded into separate instances, a comprehensive array of analytic methods that operate on the data model was created, and these methods were executed against the databases to measure performance. Conclusion There was acceptable representation of the data from 10 observational databases in the OMOP CDM using the standardized terminologies selected, and a range of analytic methods was developed and executed with sufficient performance to be useful for active safety surveillance. PMID:22037893

MixHMM: Inferring Copy Number Variation and Allelic Imbalance Using SNP Arrays and Tumor Samples Mixed with Stromal Cells

PubMed Central

Schulz, Vincent; Chen, Min; Tuck, David

2010-01-01

Background Genotyping platforms such as single nucleotide polymorphism (SNP) arrays are powerful tools to study genomic aberrations in cancer samples. Allele specific information from SNP arrays provides valuable information for interpreting copy number variation (CNV) and allelic imbalance including loss-of-heterozygosity (LOH) beyond that obtained from the total DNA signal available from array comparative genomic hybridization (aCGH) platforms. Several algorithms based on hidden Markov models (HMMs) have been designed to detect copy number changes and copy-neutral LOH making use of the allele information on SNP arrays. However heterogeneity in clinical samples, due to stromal contamination and somatic alterations, complicates analysis and interpretation of these data. Methods We have developed MixHMM, a novel hidden Markov model using hidden states based on chromosomal structural aberrations. MixHMM allows CNV detection for copy numbers up to 7 and allows more complete and accurate description of other forms of allelic imbalance, such as increased copy number LOH or imbalanced amplifications. MixHMM also incorporates a novel sample mixing model that allows detection of tumor CNV events in heterogeneous tumor samples, where cancer cells are mixed with a proportion of stromal cells. Conclusions We validate MixHMM and demonstrate its advantages with simulated samples, clinical tumor samples and a dilution series of mixed samples. We have shown that the CNVs of cancer cells in a tumor sample contaminated with up to 80% of stromal cells can be detected accurately using Illumina BeadChip and MixHMM. Availability The MixHMM is available as a Python package provided with some other useful tools at http://genecube.med.yale.edu:8080/MixHMM. PMID:20532221

Large format array controller (aLFA-C): tests and characterisation at ESA

NASA Astrophysics Data System (ADS)

Lemmel, Frédéric; ter Haar, Jörg; van der Biezen, John; Duvet, Ludovic; Nelms, Nick; Blommaert, Sander; Butler, Bart; van der Luijt, Cornelis; Heijnen, Jerko; Smit, Hans; Visser, Ivo

2016-08-01

For future near infrared astronomy missions, ESA is developing a complete detection and conversion chain (photon to SpaceWire chain system): Large Format Array (aLFA-N) based on MCT type detectors. aLFA-C (Astronomy Large Format Array Controller): a versatile cryogenic detector controller. An aLFA-C prototype was developed by Caeleste (Belgium) under ESA contract (400106260400). To validate independently the performances of the aLFA-C prototype and consolidate the definition of the follow-on activity, a dedicated test bench has been designed and developed in ESTEC/ESA within the Payload Technology Validation group. This paper presents the test setup and the performance validation of the first prototype of this controller at room and cryogenic temperature. Test setup and software needed to test the HAWAII-2RG and aLFA-N detectors with the aLFA-C prototype at cryogenic temperature will be also presented.

An info-gap application to robust design of a prestressed space structure under epistemic uncertainties

NASA Astrophysics Data System (ADS)

Hot, Aurélien; Weisser, Thomas; Cogan, Scott

2017-07-01

Uncertainty quantification is an integral part of the model validation process and is important to take into account during the design of mechanical systems. Sources of uncertainty are diverse but generally fall into two categories: aleatory due to random process and epistemic resulting from a lack of knowledge. This work focuses on the behavior of solar arrays in their stowed configuration. To avoid impacts during launch, snubbers are used to prestress the panels. Since the mechanical properties of the snubbers and the associated preload configurations are difficult to characterize precisely, an info-gap approach is proposed to investigate the influence of such uncertainties on design configurations obtained for different values of safety factors. This eventually allows to revise the typical values of these factors and to reevaluate them with respect to a targeted robustness level. The proposed methodology is illustrated using a simplified finite element model of a solar array.

Lattice Boltzmann simulations for wall-flow dynamics in porous ceramic diesel particulate filters

NASA Astrophysics Data System (ADS)

Lee, Da Young; Lee, Gi Wook; Yoon, Kyu; Chun, Byoungjin; Jung, Hyun Wook

2018-01-01

Flows through porous filter walls of wall-flow diesel particulate filter are investigated using the lattice Boltzmann method (LBM). The microscopic model of the realistic filter wall is represented by randomly overlapped arrays of solid spheres. The LB simulation results are first validated by comparison to those from previous hydrodynamic theories and constitutive models for flows in porous media with simple regular and random solid-wall configurations. We demonstrate that the newly designed randomly overlapped array structures of porous walls allow reliable and accurate simulations for the porous wall-flow dynamics in a wide range of solid volume fractions from 0.01 to about 0.8, which is beyond the maximum random packing limit of 0.625. The permeable performance of porous media is scrutinized by changing the solid volume fraction and particle Reynolds number using Darcy's law and Forchheimer's extension in the laminar flow region.

Reducing mechanical cross-coupling in phased array transducers using stop band material as backing

NASA Astrophysics Data System (ADS)

Henneberg, J.; Gerlach, A.; Storck, H.; Cebulla, H.; Marburg, S.

2018-06-01

Phased array transducers are widely used for acoustic imaging and surround sensing applications. A major design challenge is the achievement of low mechanical cross-coupling between the single transducer elements. Cross-coupling induces a loss of imaging resolution. In this work, the mechanical cross-coupling between acoustic transducers is investigated for a generic model. The model contains a common backing with two bending elements bonded on top. The dimensions of the backing are small; thus, wave reflections on the backing edges have to be considered. This is different to other researches. The operating frequency in the generic model is set to a low kHz range. Low operating frequencies are typical for surround sensing applications. The influence of the backing on cross-coupling is investigated numerically. In order to reduce mechanical cross-coupling a stop band material is designed. It is shown numerically that a reduction in mechanical cross-coupling can be achieved by using stop band material as backing. The effect is validated with experimental testing.

A statistical approach to the brittle fracture of a multi-phase solid

NASA Technical Reports Server (NTRS)

Liu, W. K.; Lua, Y. I.; Belytschko, T.

1991-01-01

A stochastic damage model is proposed to quantify the inherent statistical distribution of the fracture toughness of a brittle, multi-phase solid. The model, based on the macrocrack-microcrack interaction, incorporates uncertainties in locations and orientations of microcracks. Due to the high concentration of microcracks near the macro-tip, a higher order analysis based on traction boundary integral equations is formulated first for an arbitrary array of cracks. The effects of uncertainties in locations and orientations of microcracks at a macro-tip are analyzed quantitatively by using the boundary integral equations method in conjunction with the computer simulation of the random microcrack array. The short range interactions resulting from surrounding microcracks closet to the main crack tip are investigated. The effects of microcrack density parameter are also explored in the present study. The validity of the present model is demonstrated by comparing its statistical output with the Neville distribution function, which gives correct fits to sets of experimental data from multi-phase solids.

Methods for validating the presence of and characterizing proteins deposited onto an array

DOEpatents

Schabacker, Daniel S.

2010-09-21

A method of determining if proteins have been transferred from liquid-phase protein fractions to an array comprising staining the array with a total protein stain and imaging the array, optionally comparing the staining with a standard curve generated by staining known amounts of a known protein on the same or a similar array; a method of characterizing proteins transferred from liquid-phase protein fractions to an array including staining the array with a post-translational modification-specific (PTM-specific) stain and imaging the array and, optionally, after staining the array with a PTM-specific stain and imaging the array, washing the array, re-staining the array with a total protein stain, imaging the array, and comparing the imaging with the PTM-specific stain with the imaging with the total protein stain; stained arrays; and images of stained arrays.

An Orientation Measurement Method Based on Hall-effect Sensors for Permanent Magnet Spherical Actuators with 3D Magnet Array

PubMed Central

Yan, Liang; Zhu, Bo; Jiao, Zongxia; Chen, Chin-Yin; Chen, I-Ming

2014-01-01

An orientation measurement method based on Hall-effect sensors is proposed for permanent magnet (PM) spherical actuators with three-dimensional (3D) magnet array. As there is no contact between the measurement system and the rotor, this method could effectively avoid friction torque and additional inertial moment existing in conventional approaches. Curved surface fitting method based on exponential approximation is proposed to formulate the magnetic field distribution in 3D space. The comparison with conventional modeling method shows that it helps to improve the model accuracy. The Hall-effect sensors are distributed around the rotor with PM poles to detect the flux density at different points, and thus the rotor orientation can be computed from the measured results and analytical models. Experiments have been conducted on the developed research prototype of the spherical actuator to validate the accuracy of the analytical equations relating the rotor orientation and the value of magnetic flux density. The experimental results show that the proposed method can measure the rotor orientation precisely, and the measurement accuracy could be improved by the novel 3D magnet array. The study result could be used for real-time motion control of PM spherical actuators. PMID:25342000

Validation Report for the EO-1 Lightweight Flexible Solar Array Experiment

NASA Technical Reports Server (NTRS)

Carpenter, Bernie; Lyons, John; Day, John (Technical Monitor)

2001-01-01

The controlled deployment of the Lightweight Flexible Solar Array (LFSA) experiment using the shape memory alloy release and deployment system has been demonstrated. Work remains to be done in increasing the efficiency of Copper Indium Diselinide (CIS) terminations to the flexible harness that carries current from the array to the I-V measurement electronics.

Measurement Techniques and Instruments Suitable for Life-prediction Testing of Photovoltaic Arrays

NASA Technical Reports Server (NTRS)

Noel, G. T.; Wood, V. E.; Mcginniss, V. D.; Hassell, J. A.; Richard, N. A.; Gaines, G. B.; Carmichael, D. C.

1979-01-01

The validation of a 20-year service life for low-cost photovoltaic arrays is a critical requirement in the Low-Cost Solar Array (LSA) Project. The validation is accomplished through accelerated life-prediction tests. A two-phase study was conducted to address the needs before such tests are carried out. The results and recommended techniques from the Phase 1 investigation are summarized in the appendix. Phase 2 of the study is covered in this report and consisted of experimental evaluations of three techniques selected from these recommended as a results of the Phase 1 findings. The three techniques evaluated were specular and nonspecular optical reflectometry, chemiluminescence measurements, and electric current noise measurements.

Simulation of ultrasonic arrays for industrial and civil engineering applications including validation

NASA Astrophysics Data System (ADS)

Spies, M.; Rieder, H.; Orth, Th.; Maack, S.

2012-05-01

In this contribution we address the beam field simulation of 2D ultrasonic arrays using the Generalized Point Source Synthesis technique. Aiming at the inspection of cylindrical components (e.g. pipes) the influence of concave and convex surface curvatures, respectively, has been evaluated for a commercial probe. We have compared these results with those obtained using a commercial simulation tool. In civil engineering, the ultrasonic inspection of highly attenuating concrete structures has been advanced by the development of dry contact point transducers, mainly applied in array arrangements. Our respective simulations for a widely used commercial probe are validated using experimental results acquired on concrete half-spheres with diameters from 200 mm up to 650 mm.

Complex Source and Radiation Behaviors of Small Elements of Linear and Matrix Flexible Ultrasonic Phased-Array Transducers

NASA Astrophysics Data System (ADS)

Amory, V.; Lhémery, A.

2008-02-01

Inspection of irregular components is problematical: maladjustment of transducer shoes to surfaces causes aberrations. Flexible phased-arrays (FPAs) designed at CEA LIST to maximize contact are driven by adapted delay laws to compensate for irregularities. Optimizing FPA requires simulation tools. The behavior of one element computed by FEM is observed at the surface and its radiation experimentally validated. Efforts for one element prevent from simulating a FPA by FEM. A model is proposed where each element behaves as nonuniform source of stresses. Exact and asymptotic formulas for Lamb problem are used as convolution kernels for longitudinal, transverse and head waves; the latter is of primary importance for angle-T-beam inspections.

Vibration attenuations induced by periodic arrays of piezoelectric patches connected by enhanced resonant shunting circuits

NASA Astrophysics Data System (ADS)

Wang, Gang; Wang, Jianwei; Chen, Shengbing; Wen, Jihong

2011-12-01

Periodic arrays of piezoelectric patches connected by enhanced resonant shunting circuits are attached to a slender beam to control the propagation of vibration. Numerical models based on the transfer matrix methodology are constructed to predict the band structure, attenuation factors and the transmission of vibration in the proposed smart structure. The vibration attenuations of the proposed smart structure and that with the passive resonant shunting circuits are compared in order to verify the efficiency of the enhanced resonant shunting circuits. Vibration experiments are conducted in order to validate the theoretical predictions. The specimen with a combination of different types of resonant shunting circuits is also studied in order to gain wider attenuation frequency ranges.

Expanding the Capabilities of the JPL Electronic Nose for an International Space Station Technology Demonstration

NASA Technical Reports Server (NTRS)

Ryan, Margaret A.; Shevade, A. V.; Taylor, C. J.; Homer, M. L.; Jewell, A. D.; Kisor, A.; Manatt, K. S .; Yen, S. P. S.; Blanco, M.; Goddard, W. A., III

2006-01-01

An array-based sensing system based on polymer/carbon composite conductometric sensors is under development at JPL for use as an environmental monitor in the International Space Station. Sulfur dioxide has been added to the analyte set for this phase of development. Using molecular modeling techniques, the interaction energy between SO2 and polymer functional groups has been calculated, and polymers selected as potential SO2 sensors. Experiment has validated the model and two selected polymers have been shown to be promising materials for SO2 detection.

Development of an Infrared Lamp Array for the Smap Spacecraft Thermal Balance Test

NASA Technical Reports Server (NTRS)

Miller, Jennifer R.; Emis, Nickolas; Forgette, Daniel

2015-01-01

NASA launched the SMAP observatory in January 2015 aboard a Delta II into a sun-synchronous orbit around Earth. The science payload of a radar and a radiometer utilizes a shared rotating six-meter antenna to provide a global map of the Earth's soil moisture content and its freeze/thaw state on a global, high-resolution scale in this three-year mission. An observatory-level thermal balance test conducted in May/June 2014 validated the thermal design and demonstrated launch readiness as part of the planned environmental test campaign. An infrared lamp array was designed and used in the thermal balance test to replicate solar heating on the solar array and sunlit side of the spacecraft that would normally be seen in orbit. The design, implementation, and operation of an infrared lamp array used for this nineteen-day system thermal test are described in this paper. Instrumental to the smooth operation of this lamp array was a characterization test performed in the same chamber two months prior to the observatory test to provide insight into its array operation and flux uniformity. This knowledge was used to identify the lamp array power settings that would provide the worst case predicted on-orbit fluxes during eclipse, cold, and hot cases. It also showed the lamp array variation when adjustments in flux were needed. Calorimeters calibrated prior to testing determined a relationship between calorimeter temperature and lamp array flux. This allowed the team to adjust the lamp output for the desired absorbed flux on the solar array. Flux levels were within 10% of the desired value at the center of the solar array with an ability to maintain these levels within 5% during steady state cases. All tests demonstrated the infrared lamp array functionality and furthered lamp array understanding for modeling purposes. This method contributed to a high-fidelity environmental simulation, which was required to replicate the extreme on-orbit thermal environments.

Soft Sensing of Non-Newtonian Fluid Flow in Open Venturi Channel Using an Array of Ultrasonic Level Sensors—AI Models and Their Validations

PubMed Central

Viumdal, Håkon; Mylvaganam, Saba

2017-01-01

In oil and gas and geothermal installations, open channels followed by sieves for removal of drill cuttings, are used to monitor the quality and quantity of the drilling fluids. Drilling fluid flow rate is difficult to measure due to the varying flow conditions (e.g., wavy, turbulent and irregular) and the presence of drilling cuttings and gas bubbles. Inclusion of a Venturi section in the open channel and an array of ultrasonic level sensors above it at locations in the vicinity of and above the Venturi constriction gives the varying levels of the drilling fluid in the channel. The time series of the levels from this array of ultrasonic level sensors are used to estimate the drilling fluid flow rate, which is compared with Coriolis meter measurements. Fuzzy logic, neural networks and support vector regression algorithms applied to the data from temporal and spatial ultrasonic level measurements of the drilling fluid in the open channel give estimates of its flow rate with sufficient reliability, repeatability and uncertainty, providing a novel soft sensing of an important process variable. Simulations, cross-validations and experimental results show that feedforward neural networks with the Bayesian regularization learning algorithm provide the best flow rate estimates. Finally, the benefits of using this soft sensing technique combined with Venturi constriction in open channels are discussed. PMID:29072595

OECD-NEA Expert Group on Multi-Physics Experimental Data, Benchmarks and Validation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Valentine, Timothy; Rohatgi, Upendra S.

High-fidelity, multi-physics modeling and simulation (M&S) tools are being developed and utilized for a variety of applications in nuclear science and technology and show great promise in their abilities to reproduce observed phenomena for many applications. Even with the increasing fidelity and sophistication of coupled multi-physics M&S tools, the underpinning models and data still need to be validated against experiments that may require a more complex array of validation data because of the great breadth of the time, energy and spatial domains of the physical phenomena that are being simulated. The Expert Group on Multi-Physics Experimental Data, Benchmarks and Validationmore » (MPEBV) of the Nuclear Energy Agency (NEA) of the Organization for Economic Cooperation and Development (OECD) was formed to address the challenges with the validation of such tools. The work of the MPEBV expert group is shared among three task forces to fulfill its mandate and specific exercises are being developed to demonstrate validation principles for common industrial challenges. This paper describes the overall mission of the group, the specific objectives of the task forces, the linkages among the task forces, and the development of a validation exercise that focuses on a specific reactor challenge problem.« less

Stretched Lens Array (SLA) Photovoltaic Concentrator Hardware Development and Testing

NASA Technical Reports Server (NTRS)

Piszczor, Michael; O'Neill, Mark J.; Eskenazi, Michael

2003-01-01

Over the past two years, the Stretched Lens Array (SLA) photovoltaic concentrator has evolved, under a NASA contract, from a concept with small component demonstrators to operational array hardware that is ready for space validation testing. A fully-functional four panel SLA solar array has been designed, built and tested. This paper will summarize the focus of the hardware development effort, discuss the results of recent testing conducted under this program and present the expected performance of a full size 7kW array designed to meet the requirements of future space missions.

A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array.

PubMed

Unterseer, Sandra; Bauer, Eva; Haberer, Georg; Seidel, Michael; Knaak, Carsten; Ouzunova, Milena; Meitinger, Thomas; Strom, Tim M; Fries, Ruedi; Pausch, Hubert; Bertani, Christofer; Davassi, Alessandro; Mayer, Klaus Fx; Schön, Chris-Carolin

2014-09-29

High density genotyping data are indispensable for genomic analyses of complex traits in animal and crop species. Maize is one of the most important crop plants worldwide, however a high density SNP genotyping array for analysis of its large and highly dynamic genome was not available so far. We developed a high density maize SNP array composed of 616,201 variants (SNPs and small indels). Initially, 57 M variants were discovered by sequencing 30 representative temperate maize lines and then stringently filtered for sequence quality scores and predicted conversion performance on the array resulting in the selection of 1.2 M polymorphic variants assayed on two screening arrays. To identify high-confidence variants, 285 DNA samples from a broad genetic diversity panel of worldwide maize lines including the samples used for sequencing, important founder lines for European maize breeding, hybrids, and proprietary samples with European, US, semi-tropical, and tropical origin were used for experimental validation. We selected 616 k variants according to their performance during validation, support of genotype calls through sequencing data, and physical distribution for further analysis and for the design of the commercially available Affymetrix® Axiom® Maize Genotyping Array. This array is composed of 609,442 SNPs and 6,759 indels. Among these are 116,224 variants in coding regions and 45,655 SNPs of the Illumina® MaizeSNP50 BeadChip for study comparison. In a subset of 45,974 variants, apart from the target SNP additional off-target variants are detected, which show only a minor bias towards intermediate allele frequencies. We performed principal coordinate and admixture analyses to determine the ability of the array to detect and resolve population structure and investigated the extent of LD within a worldwide validation panel. The high density Affymetrix® Axiom® Maize Genotyping Array is optimized for European and American temperate maize and was developed based on a diverse sample panel by applying stringent quality filter criteria to ensure its suitability for a broad range of applications. With 600 k variants it is the largest currently publically available genotyping array in crop species.

On the optimization of a mixed speaker array in an enclosed space using the virtual-speaker weighting method

NASA Astrophysics Data System (ADS)

Peng, Bo; Zheng, Sifa; Liao, Xiangning; Lian, Xiaomin

2018-03-01

In order to achieve sound field reproduction in a wide frequency band, multiple-type speakers are used. The reproduction accuracy is not only affected by the signals sent to the speakers, but also depends on the position and the number of each type of speaker. The method of optimizing a mixed speaker array is investigated in this paper. A virtual-speaker weighting method is proposed to optimize both the position and the number of each type of speaker. In this method, a virtual-speaker model is proposed to quantify the increment of controllability of the speaker array when the speaker number increases. While optimizing a mixed speaker array, the gain of the virtual-speaker transfer function is used to determine the priority orders of the candidate speaker positions, which optimizes the position of each type of speaker. Then the relative gain of the virtual-speaker transfer function is used to determine whether the speakers are redundant, which optimizes the number of each type of speaker. Finally the virtual-speaker weighting method is verified by reproduction experiments of the interior sound field in a passenger car. The results validate that the optimum mixed speaker array can be obtained using the proposed method.

Rapid prototyping of flexible intrafascicular electrode arrays by picosecond laser structuring.

PubMed

Mueller, Matthias; de la Oliva, Natalia; Del Valle, Jaume; Delgado-Martínez, Ignacio; Navarro, Xavier; Stieglitz, Thomas

2017-12-01

Interfacing the peripheral nervous system can be performed with a large variety of electrode arrays. However, stimulating and recording a nerve while having a reasonable amount of channels limits the number of available systems. Translational research towards human clinical trial requires device safety and biocompatibility but would benefit from design flexibility in the development process to individualize probes. We selected established medical grade implant materials like precious metals and Parylene C to develop a rapid prototyping process for novel intrafascicular electrode arrays using a picosecond laser structuring. A design for a rodent animal model was developed in conjunction with an intrafascicular implantation strategy. Electrode characterization and optimization was performed first in saline solution in vitro before performance and biocompatibility were validated in sciatic nerves of rats in chronic implantation. The novel fabrication process proved to be suitable for prototyping and building intrafascicular electrode arrays. Electrochemical properties of the electrode sites were enhanced and tested for long-term stability. Chronic implantation in the sciatic nerve of rats showed good biocompatibility, selectivity and stable stimulation thresholds. Established medical grade materials can be used for intrafascicular nerve electrode arrays when laser structuring defines structure size in the micro-scale. Design flexibility reduces re-design cycle time and material certificates are beneficial support for safety studies on the way to clinical trials.

Magnetic antenna excitation of whistler modes. III. Group and phase velocities of wave packets

NASA Astrophysics Data System (ADS)

Urrutia, J. M.; Stenzel, R. L.

2015-07-01

The properties of whistler modes excited by single and multiple magnetic loop antennas have been investigated in a large laboratory plasma. A single loop excites a wavepacket, but an array of loops across the ambient magnetic field B0 excites approximate plane whistler modes. The single loop data are measured. The array patterns are obtained by linear superposition of experimental data shifted in space and time, which is valid in a uniform plasma and magnetic field for small amplitude waves. Phasing the array changes the angle of wave propagation. The antennas are excited by an rf tone burst whose propagating envelope and oscillations yield group and phase velocities. A single loop antenna with dipole moment across B0 excites wave packets whose topology resembles m = 1 helicon modes, but without radial boundaries. The phase surfaces are conical with propagation characteristics of Gendrin modes. The cones form near the antenna with comparable parallel and perpendicular phase velocities. A physical model for the wave excitation is given. When a wave burst is applied to a phased antenna array, the wave front propagates both along the array and into the plasma forming a "whistler wing" at the front. These laboratory observations may be relevant for excitation and detection of whistler modes in space plasmas.

Toward Development of a Stochastic Wake Model: Validation Using LES and Turbine Loads

DOE PAGES

Moon, Jae; Manuel, Lance; Churchfield, Matthew; ...

2017-12-28

Wind turbines within an array do not experience free-stream undisturbed flow fields. Rather, the flow fields on internal turbines are influenced by wakes generated by upwind unit and exhibit different dynamic characteristics relative to the free stream. The International Electrotechnical Commission (IEC) standard 61400-1 for the design of wind turbines only considers a deterministic wake model for the design of a wind plant. This study is focused on the development of a stochastic model for waked wind fields. First, high-fidelity physics-based waked wind velocity fields are generated using Large-Eddy Simulation (LES). Stochastic characteristics of these LES waked wind velocity field,more » including mean and turbulence components, are analyzed. Wake-related mean and turbulence field-related parameters are then estimated for use with a stochastic model, using Multivariate Multiple Linear Regression (MMLR) with the LES data. To validate the simulated wind fields based on the stochastic model, wind turbine tower and blade loads are generated using aeroelastic simulation for utility-scale wind turbine models and compared with those based directly on the LES inflow. The study's overall objective is to offer efficient and validated stochastic approaches that are computationally tractable for assessing the performance and loads of turbines operating in wakes.« less

Toward Development of a Stochastic Wake Model: Validation Using LES and Turbine Loads

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moon, Jae; Manuel, Lance; Churchfield, Matthew

Wind turbines within an array do not experience free-stream undisturbed flow fields. Rather, the flow fields on internal turbines are influenced by wakes generated by upwind unit and exhibit different dynamic characteristics relative to the free stream. The International Electrotechnical Commission (IEC) standard 61400-1 for the design of wind turbines only considers a deterministic wake model for the design of a wind plant. This study is focused on the development of a stochastic model for waked wind fields. First, high-fidelity physics-based waked wind velocity fields are generated using Large-Eddy Simulation (LES). Stochastic characteristics of these LES waked wind velocity field,more » including mean and turbulence components, are analyzed. Wake-related mean and turbulence field-related parameters are then estimated for use with a stochastic model, using Multivariate Multiple Linear Regression (MMLR) with the LES data. To validate the simulated wind fields based on the stochastic model, wind turbine tower and blade loads are generated using aeroelastic simulation for utility-scale wind turbine models and compared with those based directly on the LES inflow. The study's overall objective is to offer efficient and validated stochastic approaches that are computationally tractable for assessing the performance and loads of turbines operating in wakes.« less

Magneto-mechanical bone growth stimulation by actuation of highly porous ferromagnetic fiber arrays

NASA Astrophysics Data System (ADS)

Markaki, Athina E.; Clyne, Trevor W.

2005-02-01

This work relates to porous material made by bonding together fibres of a magnetic material. When subjected to a magnetic field, the array deforms, with individual fibres becoming magnetised along their length and then tending to line up locally with the direction of the field. An investigation is presented into the concept that this deformation could induce beneficial strains in bone tissue network in the early stages of growth as it grows into the porous fibre array. An analytical model has been developed, based on the deflection of individual fibre segments (between joints) experiencing bending moments as a result of the induced magnetic dipole. The model has been validated via measurements made on simple fibre assemblies and random fibre arrays. Work has also been done on the deformation characteristics of random fibre arrays with a matrix filling the inter-fibre space. This has the effect of reducing the fibre deflections. The extent of this reduction, and an estimate of the maximum strains induced in the space-filling material, can be obtained using a simple force balance approach. Predictions indicate that in-growing bone tissue, with a stiffness of around 0.01-0.1 GPa, could be strained to beneficial levels (~1 millistrain), using magnetic field strengths in current diagnostic use (~1 Tesla), provided the fibre segment aspect ratio is at least about 10. Such material has a low Young"s modulus, but the overall stiffness of a prosthesis could be matched to that of cortical bone by using an integrated design involving a porous magneto-active layer bonded to a dense non-magnetic core.

An Arrayed Genome-Scale Lentiviral-Enabled Short Hairpin RNA Screen Identifies Lethal and Rescuer Gene Candidates

PubMed Central

Bhinder, Bhavneet; Antczak, Christophe; Ramirez, Christina N.; Shum, David; Liu-Sullivan, Nancy; Radu, Constantin; Frattini, Mark G.

2013-01-01

Abstract RNA interference technology is becoming an integral tool for target discovery and validation.; With perhaps the exception of only few studies published using arrayed short hairpin RNA (shRNA) libraries, most of the reports have been either against pooled siRNA or shRNA, or arrayed siRNA libraries. For this purpose, we have developed a workflow and performed an arrayed genome-scale shRNA lethality screen against the TRC1 library in HeLa cells. The resulting targets would be a valuable resource of candidates toward a better understanding of cellular homeostasis. Using a high-stringency hit nomination method encompassing criteria of at least three active hairpins per gene and filtered for potential off-target effects (OTEs), referred to as the Bhinder–Djaballah analysis method, we identified 1,252 lethal and 6 rescuer gene candidates, knockdown of which resulted in severe cell death or enhanced growth, respectively. Cross referencing individual hairpins with the TRC1 validated clone database, 239 of the 1,252 candidates were deemed independently validated with at least three validated clones. Through our systematic OTE analysis, we have identified 31 microRNAs (miRNAs) in lethal and 2 in rescuer genes; all having a seed heptamer mimic in the corresponding shRNA hairpins and likely cause of the OTE observed in our screen, perhaps unraveling a previously unknown plausible essentiality of these miRNAs in cellular viability. Taken together, we report on a methodology for performing large-scale arrayed shRNA screens, a comprehensive analysis method to nominate high-confidence hits, and a performance assessment of the TRC1 library highlighting the intracellular inefficiencies of shRNA processing in general. PMID:23198867

Fault Analysis in Solar Photovoltaic Arrays

NASA Astrophysics Data System (ADS)

Zhao, Ye

Fault analysis in solar photovoltaic (PV) arrays is a fundamental task to increase reliability, efficiency and safety in PV systems. Conventional fault protection methods usually add fuses or circuit breakers in series with PV components. But these protection devices are only able to clear faults and isolate faulty circuits if they carry a large fault current. However, this research shows that faults in PV arrays may not be cleared by fuses under some fault scenarios, due to the current-limiting nature and non-linear output characteristics of PV arrays. First, this thesis introduces new simulation and analytic models that are suitable for fault analysis in PV arrays. Based on the simulation environment, this thesis studies a variety of typical faults in PV arrays, such as ground faults, line-line faults, and mismatch faults. The effect of a maximum power point tracker on fault current is discussed and shown to, at times, prevent the fault current protection devices to trip. A small-scale experimental PV benchmark system has been developed in Northeastern University to further validate the simulation conclusions. Additionally, this thesis examines two types of unique faults found in a PV array that have not been studied in the literature. One is a fault that occurs under low irradiance condition. The other is a fault evolution in a PV array during night-to-day transition. Our simulation and experimental results show that overcurrent protection devices are unable to clear the fault under "low irradiance" and "night-to-day transition". However, the overcurrent protection devices may work properly when the same PV fault occurs in daylight. As a result, a fault under "low irradiance" and "night-to-day transition" might be hidden in the PV array and become a potential hazard for system efficiency and reliability.

Temperature data acquired from the DOI/GTN-P Deep Borehole Array on the Arctic Slope of Alaska, 1973-2013

USGS Publications Warehouse

Clow, Gary D.

2014-01-01

System (GTOS). The data will also be useful for refining our basic understanding of the physical conditions in permafrost in Arctic Alaska, as well as providing important information for validating predictive models used for climate impact assessments. The processed data are available from the Advanced Cooperative Arctic Data and Information Service (ACADIS) repository at doi:10.5065/D6N014HK.

Multi-Node Thermal System Model for Lithium-Ion Battery Packs: Preprint

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shi, Ying; Smith, Kandler; Wood, Eric

Temperature is one of the main factors that controls the degradation in lithium ion batteries. Accurate knowledge and control of cell temperatures in a pack helps the battery management system (BMS) to maximize cell utilization and ensure pack safety and service life. In a pack with arrays of cells, a cells temperature is not only affected by its own thermal characteristics but also by its neighbors, the cooling system and pack configuration, which increase the noise level and the complexity of cell temperatures prediction. This work proposes to model lithium ion packs thermal behavior using a multi-node thermal network model,more » which predicts the cell temperatures by zones. The model was parametrized and validated using commercial lithium-ion battery packs. neighbors, the cooling system and pack configuration, which increase the noise level and the complexity of cell temperatures prediction. This work proposes to model lithium ion packs thermal behavior using a multi-node thermal network model, which predicts the cell temperatures by zones. The model was parametrized and validated using commercial lithium-ion battery packs.« less

Specifications and programs for computer software validation

NASA Technical Reports Server (NTRS)

Browne, J. C.; Kleir, R.; Davis, T.; Henneman, M.; Haller, A.; Lasseter, G. L.

1973-01-01

Three software products developed during the study are reported and include: (1) FORTRAN Automatic Code Evaluation System, (2) the Specification Language System, and (3) the Array Index Validation System.

Security enhancement of optical encryption based on biometric array keys

NASA Astrophysics Data System (ADS)

Yan, Aimin; Wei, Yang; Zhang, Jingtao

2018-07-01

A novel optical image encryption method is proposed by using Dammann grating and biometric array keys. Dammann grating is utilized to create a 2D finite uniform-intensity spot array. In encryption, a fingerprint array is used as private encryption keys. An original image can be encrypted by a scanning Fresnel zone plate array. Encrypted signals are processed by an optical coherent heterodyne detection system. Biometric array keys and optical scanning cryptography are integrated with each other to enhance information security greatly. Numerical simulations are performed to demonstrate the feasibility and validity of this method. Analyses on key sensitivity and the resistance against to possible attacks are provided.

Magnetic Flux Distribution of Linear Machines with Novel Three-Dimensional Hybrid Magnet Arrays

PubMed Central

Yao, Nan; Yan, Liang; Wang, Tianyi; Wang, Shaoping

2017-01-01

The objective of this paper is to propose a novel tubular linear machine with hybrid permanent magnet arrays and multiple movers, which could be employed for either actuation or sensing technology. The hybrid magnet array produces flux distribution on both sides of windings, and thus helps to increase the signal strength in the windings. The multiple movers are important for airspace technology, because they can improve the system’s redundancy and reliability. The proposed design concept is presented, and the governing equations are obtained based on source free property and Maxwell equations. The magnetic field distribution in the linear machine is thus analytically formulated by using Bessel functions and harmonic expansion of magnetization vector. Numerical simulation is then conducted to validate the analytical solutions of the magnetic flux field. It is proved that the analytical model agrees with the numerical results well. Therefore, it can be utilized for the formulation of signal or force output subsequently, depending on its particular implementation. PMID:29156577

Effective spring stiffness for a periodic array of interacting coplanar penny-shaped cracks at an interface between two dissimilar isotropic materials

PubMed Central

Lekesiz, Huseyin; Katsube, Noriko; Rokhlin, Stanislav I.; Seghi, Robert R.

2013-01-01

An effective spring stiffness approximation is proposed for a hexagonal array of coplanar penny shaped cracks located at the interface between two dissimilar solids. The approximation is based on the factorization of the solution on the material dissimilarity factor, the crack interaction factor and the effective spring stiffness solution for non-interacting cracks in a homogeneous material. Such factorization is exact and was validated for 2D collinear cracks between two dissimilar solids. The crack interaction factor is obtained using a recently developed model for stress intensity factors for an array of coplanar penny shaped cracks in a homogeneous material; also the material dissimilarity function recently obtained for non-interacting penny shaped crack at the interface between two dissimilar materials is employed. The obtained solution is useful for an assessment by ultrasonic measurements of the interface stiffness in bonded structures for monitoring the interfacial microdamage growth due to mechanical loading and environmental factors. PMID:27175036

Precise on-machine extraction of the surface normal vector using an eddy current sensor array

NASA Astrophysics Data System (ADS)

Wang, Yongqing; Lian, Meng; Liu, Haibo; Ying, Yangwei; Sheng, Xianjun

2016-11-01

To satisfy the requirements of on-machine measurement of the surface normal during complex surface manufacturing, a highly robust normal vector extraction method using an Eddy current (EC) displacement sensor array is developed, the output of which is almost unaffected by surface brightness, machining coolant and environmental noise. A precise normal vector extraction model based on a triangular-distributed EC sensor array is first established. Calibration of the effects of object surface inclination and coupling interference on measurement results, and the relative position of EC sensors, is involved. A novel apparatus employing three EC sensors and a force transducer was designed, which can be easily integrated into the computer numerical control (CNC) machine tool spindle and/or robot terminal execution. Finally, to test the validity and practicability of the proposed method, typical experiments were conducted with specified testing pieces using the developed approach and system, such as an inclined plane and cylindrical and spherical surfaces.

Magnetic Flux Distribution of Linear Machines with Novel Three-Dimensional Hybrid Magnet Arrays.

PubMed

Yao, Nan; Yan, Liang; Wang, Tianyi; Wang, Shaoping

2017-11-18

The objective of this paper is to propose a novel tubular linear machine with hybrid permanent magnet arrays and multiple movers, which could be employed for either actuation or sensing technology. The hybrid magnet array produces flux distribution on both sides of windings, and thus helps to increase the signal strength in the windings. The multiple movers are important for airspace technology, because they can improve the system's redundancy and reliability. The proposed design concept is presented, and the governing equations are obtained based on source free property and Maxwell equations. The magnetic field distribution in the linear machine is thus analytically formulated by using Bessel functions and harmonic expansion of magnetization vector. Numerical simulation is then conducted to validate the analytical solutions of the magnetic flux field. It is proved that the analytical model agrees with the numerical results well. Therefore, it can be utilized for the formulation of signal or force output subsequently, depending on its particular implementation.

Effective spring stiffness for a periodic array of interacting coplanar penny-shaped cracks at an interface between two dissimilar isotropic materials.

PubMed

Lekesiz, Huseyin; Katsube, Noriko; Rokhlin, Stanislav I; Seghi, Robert R

2013-08-15

An effective spring stiffness approximation is proposed for a hexagonal array of coplanar penny shaped cracks located at the interface between two dissimilar solids. The approximation is based on the factorization of the solution on the material dissimilarity factor, the crack interaction factor and the effective spring stiffness solution for non-interacting cracks in a homogeneous material. Such factorization is exact and was validated for 2D collinear cracks between two dissimilar solids. The crack interaction factor is obtained using a recently developed model for stress intensity factors for an array of coplanar penny shaped cracks in a homogeneous material; also the material dissimilarity function recently obtained for non-interacting penny shaped crack at the interface between two dissimilar materials is employed. The obtained solution is useful for an assessment by ultrasonic measurements of the interface stiffness in bonded structures for monitoring the interfacial microdamage growth due to mechanical loading and environmental factors.

In Vivo Validation of Volume Flow Measurements of Pulsatile Flow Using a Clinical Ultrasound System and Matrix Array Transducer.

PubMed

Hudson, John M; Williams, Ross; Milot, Laurent; Wei, Qifeng; Jago, James; Burns, Peter N

2017-03-01

The goal of this study was to evaluate the accuracy of a non-invasive C-plane Doppler estimation of pulsatile blood flow in the lower abdominal vessels of a porcine model. Doppler ultrasound measurements from a matrix array transducer system were compared with invasive volume flow measurements made on the same vessels with a surgically implanted ultrasonic transit-time flow probe. For volume flow rates ranging from 60 to 750 mL/min, agreement was very good, with a Pearson correlation coefficient of 0.97 (p < 0.0001) and a mean bias of -4.2%. The combination of 2-D matrix array technology and fast processing gives this Doppler method clinical potential, as many of the user- and system-dependent parameters of previous methods, including explicit vessel angle and diameter measurements, are eliminated. Copyright © 2016 World Federation for Ultrasound in Medicine & Biology. Published by Elsevier Inc. All rights reserved.

Silencing of Tuberin Enhances Photoreceptor Survival and Function in a Preclinical Model of Retinitis Pigmentosa (An American Ophthalmological Society Thesis)

PubMed Central

Tsang, Stephen H.; Chan, Lawrence; Tsai, Yi-Ting; Wu, Wen-Hsuan; Hsu, Chun-Wei; Yang, Jin; Tosi, Joaquin; Wert, Katherine J.; Davis, Richard J.; Mahajan, Vinit B.

2014-01-01

Purpose: To assess the functional consequences of silencing of tuberin, an inhibitor of the mTOR signaling pathway, in a preclinical model of retinitis pigmentosa (RP) in order to test the hypothesis that insufficient induction of the protein kinase B (PKB)-regulated tuberin/mTOR self-survival pathway initiates apoptosis. Methods: In an unbiased genome-scale approach, kinase peptide substrate arrays were used to analyze self-survival pathways at the onset of photoreceptor degeneration. The mutant Pde6bH620Q/Pde6bH620Q at P14 and P18 photoreceptor outer segment (OS) lysates were labeled with P-ATP and hybridized to an array of 1,164 different synthetic peptide substrates. At this stage, OS of Pde6bH620Q/Pde6bH620Q rods are morphologically normal. In vitro kinase assays and immunohistochemistry were used to validate phosphorylation. Short hairpin RNA (shRNA) gene silencing was used to validate tuberin’s role in regulating survival. Results: At the onset of degeneration, 162 peptides were differentially phosphorylated. Protein kinases A, G, C (AGC kinases), and B exhibited increased activity in both peptide array and in vitro kinase assays. Immunohistochemical data confirmed altered phosphorylation patterns for phosphoinositide-dependent kinase-1 (PDK1), ribosomal protein S6 (RPS6), and tuberin. Tuberin gene silencing rescued photoreceptors from degeneration. Conclusions: Phosphorylation of tuberin and RPS6 is due to the upregulated activity of PKB. PKB/tuberin cell growth/survival signaling is activated before the onset of degeneration. Substrates of the AGC kinases in the PKB/tuberin pathway are phosphorylated to promote cell survival. Knockdown of tuberin, the inhibitor of the mTOR pathway, increased photoreceptor survival and function in a preclinical model of RP. PMID:25646031

Real time interrogation technique for fiber Bragg grating enhanced fiber loop ringdown sensors array.

PubMed

Zhang, Yunlong; Li, Ruoming; Shi, Yuechun; Zhang, Jintao; Chen, Xiangfei; Liu, Shengchun

2015-06-01

A novel fiber Bragg grating aided fiber loop ringdown (FLRD) sensor array and the wavelength-time multiplexing based interrogation technique for the FLRD sensors array are proposed. The interrogation frequency of the system is formulated and the interrelationships among the parameters of the system are analyzed. To validate the performance of the proposed system, a five elements array is experimentally demonstrated, and the system shows the capability of real time monitoring every FLRD element with interrogation frequency of 125.5 Hz.

Infrasonic monitoring of snow avalanches in the Alps

NASA Astrophysics Data System (ADS)

Marchetti, E.; Ulivieri, G.; Ripepe, M.; Chiambretti, I.; Segor, V.

2012-04-01

Risk assessment of snow avalanches is mostly related to weather conditions and snow cover. However a robust risk validation requires to identify all avalanches occurring, in order to compare predictions to real effects. For this purpose on December 2010 we installed a permanent 4-element, small aperture (100 m), infrasound array in the Alps, after a pilot experiment carried out in Gressonay during the 2009-2010 winter season. The array has been deployed in the Ayas Valley, at an elevation of 2000 m a.s.l., where natural avalanches are expected and controlled events are regularly performed. The array consists into 4 Optimic 2180 infrasonic microphones, with a sensitivity of 10-3 Pa in the 0.5-50 Hz frequency band and a 4 channel Guralp CMG-DM24 A/D converter, sampling at 100 Hz. Timing is achieved with a GPS receiver. Data are transmitted to the Department of Earth Sciences of the University of Firenze, where data is recorded and processed in real-time. A multi-channel semblance is carried out on the continuous data set as a function of slowness, back-azimuth and frequency of recorded infrasound in order to detect all avalanches occurring from the back-ground signal, strongly affected by microbarom and mountain induced gravity waves. This permanent installation in Italy will allow to verify the efficiency of the system in short-to-medium range (2-8 km) avalanche detection, and might represent an important validation to model avalanches activity during this winter season. Moreover, the real-time processing of infrasonic array data, might strongly contribute to avalanche risk assessments providing an up-to-description of ongoing events.

MEMS reliability: The challenge and the promise

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, W.M.; Tanner, D.M.; Miller, S.L.

1998-05-01

MicroElectroMechanical Systems (MEMS) that think, sense, act and communicate will open up a broad new array of cost effective solutions only if they prove to be sufficiently reliable. A valid reliability assessment of MEMS has three prerequisites: (1) statistical significance; (2) a technique for accelerating fundamental failure mechanisms, and (3) valid physical models to allow prediction of failures during actual use. These already exist for the microelectronics portion of such integrated systems. The challenge lies in the less well understood micromachine portions and its synergistic effects with microelectronics. This paper presents a methodology addressing these prerequisites and a description ofmore » the underlying physics of reliability for micromachines.« less

Data Validation in the Kepler Science Operations Center Pipeline

NASA Technical Reports Server (NTRS)

Wu, Hayley; Twicken, Joseph D.; Tenenbaum, Peter; Clarke, Bruce D.; Li, Jie; Quintana, Elisa V.; Allen, Christopher; Chandrasekaran, Hema; Jenkins, Jon M.; Caldwell, Douglas A.;

Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh).

PubMed

Bianco, Luca; Cestaro, Alessandro; Sargent, Daniel James; Banchi, Elisa; Derdak, Sophia; Di Guardo, Mario; Salvi, Silvio; Jansen, Johannes; Viola, Roberto; Gut, Ivo; Laurens, Francois; Chagné, David; Velasco, Riccardo; van de Weg, Eric; Troggio, Michela

2014-01-01

High-density SNP arrays for genome-wide assessment of allelic variation have made high resolution genetic characterization of crop germplasm feasible. A medium density array for apple, the IRSC 8K SNP array, has been successfully developed and used for screens of bi-parental populations. However, the number of robust and well-distributed markers contained on this array was not sufficient to perform genome-wide association analyses in wider germplasm sets, or Pedigree-Based Analysis at high precision, because of rapid decay of linkage disequilibrium. We describe the development of an Illumina Infinium array targeting 20K SNPs. The SNPs were predicted from re-sequencing data derived from the genomes of 13 Malus × domestica apple cultivars and one accession belonging to a crab apple species (M. micromalus). A pipeline for SNP selection was devised that avoided the pitfalls associated with the inclusion of paralogous sequence variants, supported the construction of robust multi-allelic SNP haploblocks and selected up to 11 entries within narrow genomic regions of ±5 kb, termed focal points (FPs). Broad genome coverage was attained by placing FPs at 1 cM intervals on a consensus genetic map, complementing them with FPs to enrich the ends of each of the chromosomes, and by bridging physical intervals greater than 400 Kbps. The selection also included ∼3.7K validated SNPs from the IRSC 8K array. The array has already been used in other studies where ∼15.8K SNP markers were mapped with an average of ∼6.8K SNPs per full-sib family. The newly developed array with its high density of polymorphic validated SNPs is expected to be of great utility for Pedigree-Based Analysis and Genomic Selection. It will also be a valuable tool to help dissect the genetic mechanisms controlling important fruit quality traits, and to aid the identification of marker-trait associations suitable for the application of Marker Assisted Selection in apple breeding programs.

Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh)

PubMed Central

Bianco, Luca; Cestaro, Alessandro; Sargent, Daniel James; Banchi, Elisa; Derdak, Sophia; Di Guardo, Mario; Salvi, Silvio; Jansen, Johannes; Viola, Roberto; Gut, Ivo; Laurens, Francois; Chagné, David; Velasco, Riccardo; van de Weg, Eric; Troggio, Michela

2014-01-01

High-density SNP arrays for genome-wide assessment of allelic variation have made high resolution genetic characterization of crop germplasm feasible. A medium density array for apple, the IRSC 8K SNP array, has been successfully developed and used for screens of bi-parental populations. However, the number of robust and well-distributed markers contained on this array was not sufficient to perform genome-wide association analyses in wider germplasm sets, or Pedigree-Based Analysis at high precision, because of rapid decay of linkage disequilibrium. We describe the development of an Illumina Infinium array targeting 20K SNPs. The SNPs were predicted from re-sequencing data derived from the genomes of 13 Malus × domestica apple cultivars and one accession belonging to a crab apple species (M. micromalus). A pipeline for SNP selection was devised that avoided the pitfalls associated with the inclusion of paralogous sequence variants, supported the construction of robust multi-allelic SNP haploblocks and selected up to 11 entries within narrow genomic regions of ±5 kb, termed focal points (FPs). Broad genome coverage was attained by placing FPs at 1 cM intervals on a consensus genetic map, complementing them with FPs to enrich the ends of each of the chromosomes, and by bridging physical intervals greater than 400 Kbps. The selection also included ∼3.7K validated SNPs from the IRSC 8K array. The array has already been used in other studies where ∼15.8K SNP markers were mapped with an average of ∼6.8K SNPs per full-sib family. The newly developed array with its high density of polymorphic validated SNPs is expected to be of great utility for Pedigree-Based Analysis and Genomic Selection. It will also be a valuable tool to help dissect the genetic mechanisms controlling important fruit quality traits, and to aid the identification of marker-trait associations suitable for the application of Marker Assisted Selection in apple breeding programs. PMID:25303088

Flow through a very porous obstacle in a shallow channel.

PubMed

Creed, M J; Draper, S; Nishino, T; Borthwick, A G L

2017-04-01

A theoretical model, informed by numerical simulations based on the shallow water equations, is developed to predict the flow passing through and around a uniform porous obstacle in a shallow channel, where background friction is important. This problem is relevant to a number of practical situations, including flow through aquatic vegetation, the performance of arrays of turbines in tidal channels and hydrodynamic forces on offshore structures. To demonstrate this relevance, the theoretical model is used to (i) reinterpret core flow velocities in existing laboratory-based data for an array of emergent cylinders in shallow water emulating aquatic vegetation and (ii) reassess the optimum arrangement of tidal turbines to generate power in a tidal channel. Comparison with laboratory-based data indicates a maximum obstacle resistance (or minimum porosity) for which the present theoretical model is valid. When the obstacle resistance is above this threshold the shallow water equations do not provide an adequate representation of the flow, and the theoretical model over-predicts the core flow passing through the obstacle. The second application of the model confirms that natural bed resistance increases the power extraction potential for a partial tidal fence in a shallow channel and alters the optimum arrangement of turbines within the fence.

Parallel traveling-wave MRI: a feasibility study.

PubMed

Pang, Yong; Vigneron, Daniel B; Zhang, Xiaoliang

2012-04-01

Traveling-wave magnetic resonance imaging utilizes far fields of a single-piece patch antenna in the magnet bore to generate radio frequency fields for imaging large-size samples, such as the human body. In this work, the feasibility of applying the "traveling-wave" technique to parallel imaging is studied using microstrip patch antenna arrays with both the numerical analysis and experimental tests. A specific patch array model is built and each array element is a microstrip patch antenna. Bench tests show that decoupling between two adjacent elements is better than -26-dB while matching of each element reaches -36-dB, demonstrating excellent isolation performance and impedance match capability. The sensitivity patterns are simulated and g-factors are calculated for both unloaded and loaded cases. The results on B 1- sensitivity patterns and g-factors demonstrate the feasibility of the traveling-wave parallel imaging. Simulations also suggest that different array configuration such as patch shape, position and orientation leads to different sensitivity patterns and g-factor maps, which provides a way to manipulate B(1) fields and improve the parallel imaging performance. The proposed method is also validated by using 7T MR imaging experiments. Copyright © 2011 Wiley-Liss, Inc.

A High-Speed Large-Range Tip-Tilt-Piston Micromirror Array

DOE PAGES

Hopkins, Jonathan B.; Panas, Robert M.; Song, Yuanping; ...

2016-12-01

This work introduces the design of a high fill-factor (>99%) micromirror array (MMA) that consists of 1mm2 hexagonal mirrors, which are expected to each independently achieve continuous, closed-loop control of three degrees of freedom (DOFs)—tip, tilt, and piston—over large ranges (>±10o rotation and >±30μm translation) at high speeds (~45kHz for a 1o amplitude of rotational oscillation). The flexure topology of this array is designed using the Freedom, Actuation, and Constraint Topologies (FACT) synthesis approach, which utilizes geometric shapes to help designers rapidly consider every flexure topology that best achieves a desired set of DOFs driven by decoupled actuators. The geometrymore » of this array’s comb-drive actuators are optimized in conjunction with the geometry of the system’s flexures using a novel approach. The analytical models underlying this approach are verified using finite element analysis (FEA) and validated using experimental data. The capabilities of this new mirror array will enable, or significantly improve, the performance of a variety of high-impact optical technologies such as advanced optical switches, spatial-light modulators, displays, and laser steering or scanning devices.« less

A High-Speed Large-Range Tip-Tilt-Piston Micromirror Array

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hopkins, Jonathan B.; Panas, Robert M.; Song, Yuanping

This work introduces the design of a high fill-factor (>99%) micromirror array (MMA) that consists of 1mm2 hexagonal mirrors, which are expected to each independently achieve continuous, closed-loop control of three degrees of freedom (DOFs)—tip, tilt, and piston—over large ranges (>±10o rotation and >±30μm translation) at high speeds (~45kHz for a 1o amplitude of rotational oscillation). The flexure topology of this array is designed using the Freedom, Actuation, and Constraint Topologies (FACT) synthesis approach, which utilizes geometric shapes to help designers rapidly consider every flexure topology that best achieves a desired set of DOFs driven by decoupled actuators. The geometrymore » of this array’s comb-drive actuators are optimized in conjunction with the geometry of the system’s flexures using a novel approach. The analytical models underlying this approach are verified using finite element analysis (FEA) and validated using experimental data. The capabilities of this new mirror array will enable, or significantly improve, the performance of a variety of high-impact optical technologies such as advanced optical switches, spatial-light modulators, displays, and laser steering or scanning devices.« less

Experimental implementation of array-compressed parallel transmission at 7 tesla.

PubMed

Yan, Xinqiang; Cao, Zhipeng; Grissom, William A

2016-06-01

To implement and validate a hardware-based array-compressed parallel transmission (acpTx) system. In array-compressed parallel transmission, a small number of transmit channels drive a larger number of transmit coils, which are connected via an array compression network that implements optimized coil-to-channel combinations. A two channel-to-eight coil array compression network was developed using power splitters, attenuators and phase shifters, and a simulation was performed to investigate the effects of coil coupling on power dissipation in a simplified network. An eight coil transmit array was constructed using induced current elimination decoupling, and the coil and network were validated in benchtop measurements, B1+ mapping scans, and an accelerated spiral excitation experiment. The developed attenuators came within 0.08 dB of the desired attenuations, and reflection coefficients were -22 dB or better. The simulation demonstrated that up to 3× more power was dissipated in the network when coils were poorly isolated (-9.6 dB), versus well-isolated (-31 dB). Compared to split circularly-polarized coil combinations, the additional degrees of freedom provided by the array compression network led to 54% lower squared excitation error in the spiral experiment. Array-compressed parallel transmission was successfully implemented in a hardware system. Further work is needed to develop remote network tuning and to minimize network power dissipation. Magn Reson Med 75:2545-2552, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Finite element analysis simulations for ultrasonic array NDE inspections

NASA Astrophysics Data System (ADS)

Dobson, Jeff; Tweedie, Andrew; Harvey, Gerald; O'Leary, Richard; Mulholland, Anthony; Tant, Katherine; Gachagan, Anthony

2016-02-01

Advances in manufacturing techniques and materials have led to an increase in the demand for reliable and robust inspection techniques to maintain safety critical features. The application of modelling methods to develop and evaluate inspections is becoming an essential tool for the NDE community. Current analytical methods are inadequate for simulation of arbitrary components and heterogeneous materials, such as anisotropic welds or composite structures. Finite element analysis software (FEA), such as PZFlex, can provide the ability to simulate the inspection of these arrangements, providing the ability to economically prototype and evaluate improved NDE methods. FEA is often seen as computationally expensive for ultrasound problems however, advances in computing power have made it a more viable tool. This paper aims to illustrate the capability of appropriate FEA to produce accurate simulations of ultrasonic array inspections - minimizing the requirement for expensive test-piece fabrication. Validation is afforded via corroboration of the FE derived and experimentally generated data sets for a test-block comprising 1D and 2D defects. The modelling approach is extended to consider the more troublesome aspects of heterogeneous materials where defect dimensions can be of the same length scale as the grain structure. The model is used to facilitate the implementation of new ultrasonic array inspection methods for such materials. This is exemplified by considering the simulation of ultrasonic NDE in a weld structure in order to assess new approaches to imaging such structures.

Hybrid Wing Body Shielding Studies Using an Ultrasonic Configurable Fan Artificial Noise Source Generating Simple Modes

NASA Technical Reports Server (NTRS)

Sutliff, Daniel, L.; Brown, Clifford, A.; Walker, Bruce, E.

2012-01-01

An Ultrasonic Configurable Fan Artificial Noise Source (UCFANS) was designed, built, and tested in support of the Langley Research Center s 14- by 22-Foot wind tunnel test of the Hybrid Wing Body (HWB) full three-dimensional 5.8 percent scale model. The UCFANS is a 5.8 percent rapid prototype scale model of a high-bypass turbofan engine that can generate the tonal signature of candidate engines using artificial sources (no flow). The purpose of the test was to provide an estimate of the acoustic shielding benefits possible from mounting the engine on the upper surface of an HWB aircraft and to provide a database for shielding code validation. A range of frequencies, and a parametric study of modes were generated from exhaust and inlet nacelle configurations. Radiated acoustic data were acquired from a traversing linear array of 13 microphones, spanning 36 in. Two planes perpendicular to the axis of the nacelle (in its 0 orientation) and three planes parallel were acquired from the array sweep. In each plane the linear array traversed five sweeps, for a total span of 160 in. acquired. The resolution of the sweep is variable, so that points closer to the model are taken at a higher resolution. Contour plots of Sound Pressure Level, and integrated Power Levels are presented in this paper; as well as the in-duct modal structure.

Single scan parameterization of space-variant point spread functions in image space via a printed array: the impact for two PET/CT scanners.

PubMed

Kotasidis, F A; Matthews, J C; Angelis, G I; Noonan, P J; Jackson, A; Price, P; Lionheart, W R; Reader, A J

2011-05-21

Incorporation of a resolution model during statistical image reconstruction often produces images of improved resolution and signal-to-noise ratio. A novel and practical methodology to rapidly and accurately determine the overall emission and detection blurring component of the system matrix using a printed point source array within a custom-made Perspex phantom is presented. The array was scanned at different positions and orientations within the field of view (FOV) to examine the feasibility of extrapolating the measured point source blurring to other locations in the FOV and the robustness of measurements from a single point source array scan. We measured the spatially-variant image-based blurring on two PET/CT scanners, the B-Hi-Rez and the TruePoint TrueV. These measured spatially-variant kernels and the spatially-invariant kernel at the FOV centre were then incorporated within an ordinary Poisson ordered subset expectation maximization (OP-OSEM) algorithm and compared to the manufacturer's implementation using projection space resolution modelling (RM). Comparisons were based on a point source array, the NEMA IEC image quality phantom, the Cologne resolution phantom and two clinical studies (carbon-11 labelled anti-sense oligonucleotide [(11)C]-ASO and fluorine-18 labelled fluoro-l-thymidine [(18)F]-FLT). Robust and accurate measurements of spatially-variant image blurring were successfully obtained from a single scan. Spatially-variant resolution modelling resulted in notable resolution improvements away from the centre of the FOV. Comparison between spatially-variant image-space methods and the projection-space approach (the first such report, using a range of studies) demonstrated very similar performance with our image-based implementation producing slightly better contrast recovery (CR) for the same level of image roughness (IR). These results demonstrate that image-based resolution modelling within reconstruction is a valid alternative to projection-based modelling, and that, when using the proposed practical methodology, the necessary resolution measurements can be obtained from a single scan. This approach avoids the relatively time-consuming and involved procedures previously proposed in the literature.

Modernization of the Defense Sector. Principles and Characteristics of the Argentine Model

DTIC Science & Technology

2007-01-01

penalty for failing to comply with a collection of information if it does not display a currently valid OMB control number. 1. REPORT DATE 2001 2...Armed Forces according to democratic rules –especially in compliance with the principle of sub- ordination to civilian control and the limited assign...domestic sphere. os armados en el plano interno . Derived from such complex scenario, we find an array of demands the Ministry of Defense must

A Generic and Efficient E-field Parallel Imaging Correlator for Next-Generation Radio Telescopes

NASA Astrophysics Data System (ADS)

Thyagarajan, Nithyanandan; Beardsley, Adam P.; Bowman, Judd D.; Morales, Miguel F.

2017-05-01

Modern radio telescopes are favouring densely packed array layouts with large numbers of antennas (NA ≳ 1000). Since the complexity of traditional correlators scales as O(N_A^2), there will be a steep cost for realizing the full imaging potential of these powerful instruments. Through our generic and efficient E-field Parallel Imaging Correlator (epic), we present the first software demonstration of a generalized direct imaging algorithm, namely the Modular Optimal Frequency Fourier imager. Not only does it bring down the cost for dense layouts to O(N_A log _2N_A) but can also image from irregular layouts and heterogeneous arrays of antennas. epic is highly modular, parallelizable, implemented in object-oriented python, and publicly available. We have verified the images produced to be equivalent to those from traditional techniques to within a precision set by gridding coarseness. We have also validated our implementation on data observed with the Long Wavelength Array (LWA1). We provide a detailed framework for imaging with heterogeneous arrays and show that epic robustly estimates the input sky model for such arrays. Antenna layouts with dense filling factors consisting of a large number of antennas such as LWA, the Square Kilometre Array, Hydrogen Epoch of Reionization Array, and Canadian Hydrogen Intensity Mapping Experiment will gain significant computational advantage by deploying an optimized version of epic. The algorithm is a strong candidate for instruments targeting transient searches of fast radio bursts as well as planetary and exoplanetary phenomena due to the availability of high-speed calibrated time-domain images and low output bandwidth relative to visibility-based systems.

The Solar Array Photovoltaic Assembly for the INSAT 4CR Spacecraft Design, Development and In-Orbit Performance

NASA Astrophysics Data System (ADS)

Thomas, Joseph; Sudhakar, M.; Agarwal, Anil; Sankaran, M.; Mudramachary, P.

2008-09-01

The INSAT 4CR spacecraft, the third in the INSAT 4 series of Indian Space Research Organization (ISRO)'s Communication satellite program, is a high power communication satellite in Geo- stationary Earth Orbit (GEO), configured using the ISRO I2K bus. The primary power is provided by two-wing sun tracking, deployable solar array and the eclipse load requirement is supported by two 70 Ah nickel hydrogen batteries. The power output of the solar array is regulated by Sequential Switching Shunt Regulators to 42V±0.5V. The salient feature of the solar array design is that it uses the new generation multi junction solar cells for all the four panels of size 2.54m x 1.525m to meet the higher power requirement with the available array area. The solar panel fabrication process with the Advanced Triple Junction (ATJ) solar cells from M/s. EMCORE, USA, has been demonstrated for the GEO life cycle through qualification coupon fabrication and testing.This paper describes the INSAT 4CR solar array photovoltaic assemblies design, layout optimization and realization of the Flight Model (FM) panels. It focuses on the power generation prediction, electrical performance measurement under Large Area Pulsed Sun Simulator (LAPSS) and verification of the ground level test results. The indigenously built Geostationary Launch Vehicle (GSLV F04) has successfully launched the INSAT 4CR spacecraft into the orbit on September 2nd, 2007. This paper also presents the analysis of telemetry data to validate the initial phase in-orbit performance of the solar array with prediction.

Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array.

PubMed

Das, Sayan; Bhat, Prasanna R; Sudhakar, Chinta; Ehlers, Jeffrey D; Wanamaker, Steve; Roberts, Philip A; Cui, Xinping; Close, Timothy J

2008-02-28

Cowpea (Vigna unguiculata L. Walp) is an important food and fodder legume of the semiarid tropics and subtropics worldwide, especially in sub-Saharan Africa. High density genetic linkage maps are needed for marker assisted breeding but are not available for cowpea. A single feature polymorphism (SFP) is a microarray-based marker which can be used for high throughput genotyping and high density mapping. Here we report detection and validation of SFPs in cowpea using a readily available soybean (Glycine max) genome array. Robustified projection pursuit (RPP) was used for statistical analysis using RNA as a surrogate for DNA. Using a 15% outlying score cut-off, 1058 potential SFPs were enumerated between two parents of a recombinant inbred line (RIL) population segregating for several important traits including drought tolerance, Fusarium and brown blotch resistance, grain size and photoperiod sensitivity. Sequencing of 25 putative polymorphism-containing amplicons yielded a SFP probe set validation rate of 68%. We conclude that the Affymetrix soybean genome array is a satisfactory platform for identification of some 1000's of SFPs for cowpea. This study provides an example of extension of genomic resources from a well supported species to an orphan crop. Presumably, other legume systems are similarly tractable to SFP marker development using existing legume array resources.

Assessment of the five-factor model of personality.

PubMed

Widiger, T A; Trull, T J

1997-04-01

The five-factor model (FFM) of personality is obtaining construct validation, recognition, and practical consideration across a broad domain of fields, including clinical psychology, industrial-organizational psychology, and health psychology. As a result, an array of instruments have been developed and existing instruments are being modified to assess the FFM. In this article, we present an overview and critique of five such instruments (the Goldberg Big Five Markers, the revised NEO Personality Inventory, the Interpersonal Adjective Scales-Big Five, the Personality Psychopathology-Five, and the Hogan Personality Inventory), focusing in particular on their representation of the lexical FFM and their practical application.

Multiple-Array Detection, Association and Location of Infrasound and Seismo-Acoustic Events - Utilization of Ground Truth Information

DTIC Science & Technology

2010-09-01

MULTIPLE-ARRAY DETECTION, ASSOCIATION AND LOCATION OF INFRASOUND AND SEISMO-ACOUSTIC EVENTS – UTILIZATION OF GROUND TRUTH INFORMATION Stephen J...and infrasound data from seismo-acoustic arrays and apply the methodology to regional networks for validation with ground truth information. In the...initial year of the project automated techniques for detecting, associating and locating infrasound signals were developed. Recently, the location

Fan array wind tunnel: a multifunctional, complex environmental flow manipulator

NASA Astrophysics Data System (ADS)

Dougherty, Christopher; Veismann, Marcel; Gharib, Morteza

2017-11-01

The recent emergence of small unmanned aerial vehicles (UAVs) has reshaped the aerospace testing environment. Traditional closed-loop wind tunnels are not particularly suited nor easily retrofit to take advantage of these coordinated, controls-based rotorcraft. As such, a highly configurable, novel wind tunnel aimed at addressing the unmet technical challenges associated with single or formation flight performance of autonomous drone systems is presented. The open-loop fan array wind tunnel features 1296 individually controllable DC fans arranged in a 2.88m x 2.88m array. The fan array can operate with and without a tunnel enclosure and is able to rotate between horizontal and vertical testing configurations. In addition to standard variable speed uniform flow, the fan array can generate both unsteady and shear flows. Through the aid of smaller side fan array units, vortex flows are also possible. Conceptual design, fabrication, and validation of the tunnel performance will be presented, including theoretical and computational predictions of flow speed and turbulence intensity. Validation of these parameters is accomplished through standard pitot-static and hot-wire techniques. Particle image velocimetry (PIV) of various complex flows will also be shown. This material is based upon work supported by the Center for Autonomous Systems and Technologies (CAST) at the Graduate Aerospace Laboratories of the California Institute of Technology (GALCIT).

Simulation and experimental characterization of the point spread function, pixel saturation, and blooming of a mercury cadmium telluride focal plane array.

PubMed

Soehnel, Grant; Tanbakuchi, Anthony

2012-11-20

A custom IR spot scanning experiment was constructed to project subpixel spots on a mercury cadmium telluride focal plane array (FPA). The hardware consists of an FPA in a liquid nitrogen cooled Dewar, high precision motorized stages, a custom aspheric lens, and a 1.55 and 3.39 μm laser source. By controlling the position and intensity of the spot, characterizations of cross talk, saturation, blooming, and (indirectly) the minority carrier lifetime were performed. In addition, a Monte-Carlo-based charge diffusion model was developed to validate experimental data and make predictions. Results show very good agreement between the model and experimental data. Parameters such as wavelength, reverse bias, and operating temperature were found to have little effect on pixel crosstalk in the absorber layer of the detector. Saturation characterizations show that these FPAs, which do not have antiblooming circuitry, exhibit an increase in cross talk due to blooming at ∼39% beyond the flux required for analog saturation.

Performance comparison of SNP detection tools with illumina exome sequencing data—an assessment using both family pedigree information and sample-matched SNP array data

PubMed Central

Yi, Ming; Zhao, Yongmei; Jia, Li; He, Mei; Kebebew, Electron; Stephens, Robert M.

2014-01-01

To apply exome-seq-derived variants in the clinical setting, there is an urgent need to identify the best variant caller(s) from a large collection of available options. We have used an Illumina exome-seq dataset as a benchmark, with two validation scenarios—family pedigree information and SNP array data for the same samples, permitting global high-throughput cross-validation, to evaluate the quality of SNP calls derived from several popular variant discovery tools from both the open-source and commercial communities using a set of designated quality metrics. To the best of our knowledge, this is the first large-scale performance comparison of exome-seq variant discovery tools using high-throughput validation with both Mendelian inheritance checking and SNP array data, which allows us to gain insights into the accuracy of SNP calling through such high-throughput validation in an unprecedented way, whereas the previously reported comparison studies have only assessed concordance of these tools without directly assessing the quality of the derived SNPs. More importantly, the main purpose of our study was to establish a reusable procedure that applies high-throughput validation to compare the quality of SNP discovery tools with a focus on exome-seq, which can be used to compare any forthcoming tool(s) of interest. PMID:24831545

Effects of discrete-electrode arrangement on traveling-wave electroosmotic pumping

NASA Astrophysics Data System (ADS)

Liu, Weiyu; Shao, Jinyou; Ren, Yukun; Wu, Yupan; Wang, Chunhui; Ding, Haitao; Jiang, Hongyuan; Ding, Yucheng

2016-09-01

Traveling-wave electroosmotic (TWEO) pumping arises from the action of an imposed traveling-wave (TW) electric field on its own induced charge in the diffuse double layer, which is formed on top of an electrode array immersed in electrolyte solutions. Such a traveling field can be merely realized in practice by a discrete electrode array upon which the corresponding voltages of correct phase are imposed. By employing the theory of linear and weakly nonlinear double-layer charging dynamics, a physical model incorporating both the nonlinear surface capacitance of diffuse layer and Faradaic current injection is developed herein in order to quantify the changes in TWEO pumping performance from a single-mode TW to discrete electrode configuration. Benefiting from the linear analysis, we investigate the influence of using discrete electrode array to create the TW signal on the resulting fluid motion, and several approaches are suggested to improve the pumping performance. In the nonlinear regime, our full numerical analysis considering the intervening isolation spacing indicates that a practical four-phase discrete electrode configuration of equal electrode and gap width exhibits stronger nonlinearity than expected from the idealized pump applied with a single-mode TW in terms of voltage-dependence of the ideal pumping frequency and peak flow rate, though it has a much lower pumping performance. For model validation, pumping of electrolytes by TWEO is achieved over a confocal spiral four-phase electrode array covered by an insulating microchannel; measurement of flow velocity indicates the modified nonlinear theory considering moderate Faradaic conductance is indeed a more accurate physical description of TWEO. These results offer useful guidelines for designing high-performance TWEO microfluidic pumps with discrete electrode array.

Phase Velocity and Full-Waveform Analysis of Co-located Distributed Acoustic Sensing (DAS) Channels and Geophone Sensor

NASA Astrophysics Data System (ADS)

Parker, L.; Mellors, R. J.; Thurber, C. H.; Wang, H. F.; Zeng, X.

2015-12-01

A 762-meter Distributed Acoustic Sensing (DAS) array with a channel spacing of one meter was deployed at the Garner Valley Downhole Array in Southern California. The array was approximately rectangular with dimensions of 180 meters by 80 meters. The array also included two subdiagonals within the rectangle along which three-component geophones were co-located. Several active sources were deployed, including a 45-kN, swept-frequency, shear-mass shaker, which produced strong Rayleigh waves across the array. Both DAS and geophone traces were filtered in 2-Hz steps between 4 and 20 Hz to obtain phase velocities as a function of frequency from fitting the moveout of travel times over distances of 35 meters or longer. As an alternative to this traditional means of finding phase velocity, it is theoretically possible to find the Rayleigh-wave phase velocity at each point of co-location as the ratio of DAS and geophone responses, because DAS is sensitive to ground strain and geophones are sensitive to ground velocity, after suitable corrections for instrument response (Mikumo & Aki, 1964). The concept was tested in WPP, a seismic wave propagation program, by first validating and then using a 3D synthetic, full-waveform seismic model to simulate the effect of increased levels of noise and uncertainty as data go from ideal to more realistic. The results obtained from this study provide a better understanding of the DAS response and its potential for being combined with traditional seismometers for obtaining phase velocity at a single location. This analysis is part of the PoroTomo project (Poroelastic Tomography by Adjoint Inverse Modeling of Data from Seismology, Geodesy, and Hydrology, http://geoscience.wisc.edu/feigl/porotomo).

Equivalent radiation source of 3D package for electromagnetic characteristics analysis

NASA Astrophysics Data System (ADS)

Li, Jun; Wei, Xingchang; Shu, Yufei

2017-10-01

An equivalent radiation source method is proposed to characterize electromagnetic emission and interference of complex three dimensional integrated circuits (IC) in this paper. The method utilizes amplitude-only near-field scanning data to reconstruct an equivalent magnetic dipole array, and the differential evolution optimization algorithm is proposed to extract the locations, orientation and moments of those dipoles. By importing the equivalent dipoles model into a 3D full-wave simulator together with the victim circuit model, the electromagnetic interference issues in mixed RF/digital systems can be well predicted. A commercial IC is used to validate the accuracy and efficiency of this proposed method. The coupled power at the victim antenna port calculated by the equivalent radiation source is compared with the measured data. Good consistency is obtained which confirms the validity and efficiency of the method. Project supported by the National Nature Science Foundation of China (No. 61274110).

Rapid prototyping of flexible intrafascicular electrode arrays by picosecond laser structuring

NASA Astrophysics Data System (ADS)

Mueller, Matthias; de la Oliva, Natalia; del Valle, Jaume; Delgado-Martínez, Ignacio; Navarro, Xavier; Stieglitz, Thomas

2017-12-01

Objective. Interfacing the peripheral nervous system can be performed with a large variety of electrode arrays. However, stimulating and recording a nerve while having a reasonable amount of channels limits the number of available systems. Translational research towards human clinical trial requires device safety and biocompatibility but would benefit from design flexibility in the development process to individualize probes. Approach. We selected established medical grade implant materials like precious metals and Parylene C to develop a rapid prototyping process for novel intrafascicular electrode arrays using a picosecond laser structuring. A design for a rodent animal model was developed in conjunction with an intrafascicular implantation strategy. Electrode characterization and optimization was performed first in saline solution in vitro before performance and biocompatibility were validated in sciatic nerves of rats in chronic implantation. Main results. The novel fabrication process proved to be suitable for prototyping and building intrafascicular electrode arrays. Electrochemical properties of the electrode sites were enhanced and tested for long-term stability. Chronic implantation in the sciatic nerve of rats showed good biocompatibility, selectivity and stable stimulation thresholds. Significance. Established medical grade materials can be used for intrafascicular nerve electrode arrays when laser structuring defines structure size in the micro-scale. Design flexibility reduces re-design cycle time and material certificates are beneficial support for safety studies on the way to clinical trials.

Characterization of Aluminum Honeycomb and Experimentation for Model Development and Validation, Volume I: Discovery and Characterization Experiments for High-Density Aluminum Honeycomb

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu, Wei-Yang; Korellis, John S.; Lee, Kenneth L.

2006-08-01

Honeycomb is a structure that consists of two-dimensional regular arrays of open cells. High-density aluminum honeycomb has been used in weapon assemblies to mitigate shock and protect payload because of its excellent crush properties. In order to use honeycomb efficiently and to certify the payload is protected by the honeycomb under various loading conditions, a validated honeycomb crush model is required and the mechanical properties of the honeycombs need to be fully characterized. Volume I of this report documents an experimental study of the crush behavior of high-density honeycombs. Two sets of honeycombs were included in this investigation: commercial grademore » for initial exploratory experiments, and weapon grade, which satisfied B61 specifications. This investigation also includes developing proper experimental methods for crush characterization, conducting discovery experiments to explore crush behaviors for model improvement, and identifying experimental and material uncertainties.« less

A Probabilistic Approach to Predict Thermal Fatigue Life for Ball Grid Array Solder Joints

NASA Astrophysics Data System (ADS)

Wei, Helin; Wang, Kuisheng

2011-11-01

Numerous studies of the reliability of solder joints have been performed. Most life prediction models are limited to a deterministic approach. However, manufacturing induces uncertainty in the geometry parameters of solder joints, and the environmental temperature varies widely due to end-user diversity, creating uncertainties in the reliability of solder joints. In this study, a methodology for accounting for variation in the lifetime prediction for lead-free solder joints of ball grid array packages (PBGA) is demonstrated. The key aspects of the solder joint parameters and the cyclic temperature range related to reliability are involved. Probabilistic solutions of the inelastic strain range and thermal fatigue life based on the Engelmaier model are developed to determine the probability of solder joint failure. The results indicate that the standard deviation increases significantly when more random variations are involved. Using the probabilistic method, the influence of each variable on the thermal fatigue life is quantified. This information can be used to optimize product design and process validation acceptance criteria. The probabilistic approach creates the opportunity to identify the root causes of failed samples from product fatigue tests and field returns. The method can be applied to better understand how variation affects parameters of interest in an electronic package design with area array interconnections.

The Fuge Tube Diode Array Spectrophotometer

ERIC Educational Resources Information Center

Arneson, B. T.; Long, S. R.; Stewart, K. K.; Lagowski, J. J.

2008-01-01

We present the details for adapting a diode array UV-vis spectrophotometer to incorporate the use of polypropylene microcentrifuge tubes--fuge tubes--as cuvettes. Optical data are presented validating that the polyethylene fuge tubes are equivalent to the standard square cross section polystyrene or glass cuvettes generally used in…

An integrated radar model solution for mission level performance and cost trades

NASA Astrophysics Data System (ADS)

Hodge, John; Duncan, Kerron; Zimmerman, Madeline; Drupp, Rob; Manno, Mike; Barrett, Donald; Smith, Amelia

2017-05-01

A fully integrated Mission-Level Radar model is in development as part of a multi-year effort under the Northrop Grumman Mission Systems (NGMS) sector's Model Based Engineering (MBE) initiative to digitally interconnect and unify previously separate performance and cost models. In 2016, an NGMS internal research and development (IR and D) funded multidisciplinary team integrated radio frequency (RF), power, control, size, weight, thermal, and cost models together using a commercial-off-the-shelf software, ModelCenter, for an Active Electronically Scanned Array (AESA) radar system. Each represented model was digitally connected with standard interfaces and unified to allow end-to-end mission system optimization and trade studies. The radar model was then linked to the Air Force's own mission modeling framework (AFSIM). The team first had to identify the necessary models, and with the aid of subject matter experts (SMEs) understand and document the inputs, outputs, and behaviors of the component models. This agile development process and collaboration enabled rapid integration of disparate models and the validation of their combined system performance. This MBE framework will allow NGMS to design systems more efficiently and affordably, optimize architectures, and provide increased value to the customer. The model integrates detailed component models that validate cost and performance at the physics level with high-level models that provide visualization of a platform mission. This connectivity of component to mission models allows hardware and software design solutions to be better optimized to meet mission needs, creating cost-optimal solutions for the customer, while reducing design cycle time through risk mitigation and early validation of design decisions.

Solar power plant performance evaluation: simulation and experimental validation

NASA Astrophysics Data System (ADS)

Natsheh, E. M.; Albarbar, A.

2012-05-01

In this work the performance of solar power plant is evaluated based on a developed model comprise photovoltaic array, battery storage, controller and converters. The model is implemented using MATLAB/SIMULINK software package. Perturb and observe (P&O) algorithm is used for maximizing the generated power based on maximum power point tracker (MPPT) implementation. The outcome of the developed model are validated and supported by a case study carried out using operational 28.8kW grid-connected solar power plant located in central Manchester. Measurements were taken over 21 month's period; using hourly average irradiance and cell temperature. It was found that system degradation could be clearly monitored by determining the residual (the difference) between the output power predicted by the model and the actual measured power parameters. It was found that the residual exceeded the healthy threshold, 1.7kW, due to heavy snow in Manchester last winter. More important, the developed performance evaluation technique could be adopted to detect any other reasons that may degrade the performance of the P V panels such as shading and dirt. Repeatability and reliability of the developed system performance were validated during this period. Good agreement was achieved between the theoretical simulation and the real time measurement taken the online grid connected solar power plant.

Experimental Validation of Displacement Underestimation in ARFI Ultrasound

PubMed Central

Czernuszewicz, Tomasz J.; Streeter, Jason E.; Dayton, Paul A.; Gallippi, Caterina M.

2014-01-01

Acoustic radiation force impulse (ARFI) imaging is an elastography technique that uses ultrasonic pulses to both displace and track tissue motion. Previous modeling studies have shown that ARFI displacements are susceptible to underestimation due to lateral and elevational shearing that occurs within the tracking resolution cell. In this study, optical tracking was utilized to experimentally measure the displacement underestimation achieved by acoustic tracking using a clinical ultrasound system. Three optically translucent phantoms of varying stiffness were created, embedded with sub-wavelength diameter microspheres, and ARFI excitation pulses with F/1.5 or F/3 lateral focal configurations were transmitted from a standard linear array to induce phantom motion. Displacements were tracked using confocal optical and acoustic methods. As predicted by earlier FEM studies, significant acoustic displacement underestimation was observed for both excitation focal configurations; the maximum underestimation error was 35% of the optically measured displacement for the F/1.5 excitation pulse in the softest phantom. Using higher F/#, less tightly focused beams in the lateral dimension improved accuracy of displacements by approximately 10 percentage points. This work experimentally demonstrates limitations of ARFI implemented on a clinical scanner using a standard linear array and sets up a framework for future displacement tracking validation studies. PMID:23858054

Measured and calculated acoustic attenuation rates of tuned resonator arrays for two surface impedance distribution models with flow

NASA Technical Reports Server (NTRS)

Parrott, Tony L.; Abrahamson, A. Louis; Jones, Michael G.

1988-01-01

An experiment was performed to validate two analytical models for predicting low frequency attenuation of duct liner configurations built from an array of seven resonators that could be individually tuned via adjustable cavity depths. These analytical models had previously been developed for high frequency aero-engine inlet duct liner design. In the low frequency application, the liner surface impedance distribution is unavoidably spatially varying by virtue of available fabrication techniques. The characteristic length of this spatial variation may be a significant fraction of the acoustic wavelength. Comparison of measured and predicted attenuation rates and transmission losses for both modal decomposition and finite element propagation models were in good to excellent agreement for a test frequency range that included the first and second cavity resonance frequencies. This was true for either of two surface impedance distribution modeling procedures used to simplify the impedance boundary conditions. In the presence of mean flow, measurements revealed a fine scale structure of acoustic hot spots in the attenuation and phase profiles. These details were accurately predicted by the finite element model. Since no impedance changes due to mean flow were assumed, it is concluded that this fine scale structure was due to convective effects of the mean flow interacting with the surface impedance nonuniformities.

Programmable stream prefetch with resource optimization

DOEpatents

Boyle, Peter; Christ, Norman; Gara, Alan; Mawhinney, Robert; Ohmacht, Martin; Sugavanam, Krishnan

2013-01-08

A stream prefetch engine performs data retrieval in a parallel computing system. The engine receives a load request from at least one processor. The engine evaluates whether a first memory address requested in the load request is present and valid in a table. The engine checks whether there exists valid data corresponding to the first memory address in an array if the first memory address is present and valid in the table. The engine increments a prefetching depth of a first stream that the first memory address belongs to and fetching a cache line associated with the first memory address from the at least one cache memory device if there is not yet valid data corresponding to the first memory address in the array. The engine determines whether prefetching of additional data is needed for the first stream within its prefetching depth. The engine prefetches the additional data if the prefetching is needed.

The druggable genome and support for target identification and validation in drug development.

PubMed

Finan, Chris; Gaulton, Anna; Kruger, Felix A; Lumbers, R Thomas; Shah, Tina; Engmann, Jorgen; Galver, Luana; Kelley, Ryan; Karlsson, Anneli; Santos, Rita; Overington, John P; Hingorani, Aroon D; Casas, Juan P

2017-03-29

Target identification (determining the correct drug targets for a disease) and target validation (demonstrating an effect of target perturbation on disease biomarkers and disease end points) are important steps in drug development. Clinically relevant associations of variants in genes encoding drug targets model the effect of modifying the same targets pharmacologically. To delineate drug development (including repurposing) opportunities arising from this paradigm, we connected complex disease- and biomarker-associated loci from genome-wide association studies to an updated set of genes encoding druggable human proteins, to agents with bioactivity against these targets, and, where there were licensed drugs, to clinical indications. We used this set of genes to inform the design of a new genotyping array, which will enable association studies of druggable genes for drug target selection and validation in human disease. Copyright © 2017, American Association for the Advancement of Science.

NuSTAR on-ground calibration: II. Effective area

NASA Astrophysics Data System (ADS)

Brejnholt, Nicolai F.; Christensen, Finn E.; Westergaard, Niels J.; Hailey, Charles J.; Koglin, Jason E.; Craig, William W.

2012-09-01

The Nuclear Spectroscopic Telescope ARray (NuSTAR) was launched in June 2012 carrying the first focusing hard X-ray (5-80keV) optics to orbit. The multilayer coating was carried out at the Technical University of Denmark (DTU Space). In this article we introduce the NuSTAR multilayer reference database and its implementation in the NuSTAR optic response model. The database and its implementation is validated using on-ground effective area calibration data and used to estimate in-orbit performance.

Development of a Real-Time Hardware-in-the-Loop Power Systems Simulation Platform to Evaluate Commercial Microgrid Controllers

DTIC Science & Technology

2016-02-19

power converter, a solar photovoltaic ( PV ) system with inverter, and eighteen breakers. (Future work will require either validation of these models...custom control software. (For this project, this was done for the energy storage, solar PV , and breakers.) Implement several relay protection functions...for the PV array is given in Section A.3. This profile was generated by applying a decimation/interpolation filter to the signal from a solar flux

TR-1203: Development of a Real-Time Hardware-in-the-Loop Power Systems Simulation Platform to Evaluate Commercial Microgrid Controllers

DTIC Science & Technology

2016-02-23

power converter, a solar photovoltaic ( PV ) system with inverter, and eighteen breakers. (Future work will require either validation of these models or...control software. (For this project, this was done for the energy storage, solar PV , and breakers.) Implement several relay protection functions to...the PV array is given in Section A.3. This profile was generated by applying a decimation/interpolation filter to the signal from a solar flux point

In Vivo Validation of Custom-Designed Silicon-Based Microelectrode Arrays for Long-Term Neural Recording and Stimulation

PubMed Central

Manoonkitiwongsa, Panya S.; Wang, Cindy X.; McCreery, Douglas B.

2012-01-01

We developed and validated silicon-based neural probes for neural stimulating and recording in long-term implantation in the brain. The probes combine the deep reactive ion etching process and mechanical shaping of their tip region, yielding a mechanically sturdy shank with a sharpened tip to reduce insertion force into the brain and spinal cord, particularly, with multiple shanks in the same array. The arrays’ insertion forces have been quantified in vitro. Five consecutive chronically-implanted devices were fully functional from 3 to 18 months. The microelectrode sites were electroplated with iridium oxide, and the charge injection capacity measurements were performed both in vitro and after implantation in the adult feline brain. The functionality of the chronic array was validated by stimulating in the cochlear nucleus and recording the evoked neuronal activity in the central nucleus of the inferior colliculus. The arrays’ recording quality has also been quantified in vivo with neuronal spike activity recorded up to 566 days after implantation. Histopathology evaluation of neurons and astrocytes using immunohistochemical stains indicated minimal alterations of tissue architecture after chronic implantation. PMID:22020666

Single neural adaptive controller and neural network identifier based on PSO algorithm for spherical actuators with 3D magnet array

NASA Astrophysics Data System (ADS)

Yan, Liang; Zhang, Lu; Zhu, Bo; Zhang, Jingying; Jiao, Zongxia

2017-10-01

Permanent magnet spherical actuator (PMSA) is a multi-variable featured and inter-axis coupled nonlinear system, which unavoidably compromises its motion control implementation. Uncertainties such as external load and friction torque of ball bearing and manufacturing errors also influence motion performance significantly. Therefore, the objective of this paper is to propose a controller based on a single neural adaptive (SNA) algorithm and a neural network (NN) identifier optimized with a particle swarm optimization (PSO) algorithm to improve the motion stability of PMSA with three-dimensional magnet arrays. The dynamic model and computed torque model are formulated for the spherical actuator, and a dynamic decoupling control algorithm is developed. By utilizing the global-optimization property of the PSO algorithm, the NN identifier is trained to avoid locally optimal solution and achieve high-precision compensations to uncertainties. The employment of the SNA controller helps to reduce the effect of compensation errors and convert the system to a stable one, even if there is difference between the compensations and uncertainties due to external disturbances. A simulation model is established, and experiments are conducted on the research prototype to validate the proposed control algorithm. The amplitude of the parameter perturbation is set to 5%, 10%, and 15%, respectively. The strong robustness of the proposed hybrid algorithm is validated by the abundant simulation data. It shows that the proposed algorithm can effectively compensate the influence of uncertainties and eliminate the effect of inter-axis couplings of the spherical actuator.

A Centerless Circular Array Method: Extracting Maximal Information on Phase Velocities of Rayleigh Waves From Microtremor Records From a Simple Seismic Array

NASA Astrophysics Data System (ADS)

Cho, I.; Tada, T.; Shinozaki, Y.

2005-12-01

We have developed a Centerless Circular Array (CCA) method of microtremor exploration, an algorithm that enables to estimate phase velocities of Rayleigh waves by analyzing vertical-component records of microtremors that are obtained with an array of three or five seismic sensors placed around a circumference. Our CCA method shows a remarkably high performance in long-wavelength ranges because, unlike the frequency-wavenumber spectral method, our method does not resolve individual plane-wave components in the process of identifying phase velocities. Theoretical considerations predict that the resolving power of our CCA method in long-wavelength ranges depends upon the SN ratio, or the ratio of power of the propagating components to that of the non-propagating components (incoherent noise) contained in the records from the seismic array. The applicability of our CCA method to small-sized arrays on the order of several meters in radius has already been confirmed in our earlier work (Cho et al., 2004). We have deployed circular seismic arrays of different sizes at test sites in Japan where the underground structure is well documented through geophysical exploration, and have applied our CCA method to microtremor records to estimate phase velocities of Rayleigh waves. The estimates were then checked against "model" phase velocities that are derived from theoretical calculations. For arrays of 5, 25, 300 and 600 meters in radii, the estimated and model phase velocities demonstrated fine agreement within a broad wavelength range extending from a little larger than 3r (r: the array radius) up to at least 40r, 14r, 42r and 9r, respectively. This demonstrates the applicability of our CCA method to arrays on the order of several to several hundreds of meters in radii, and also illustrates, in a typical way, the markedly high performance of our CCA method in long-wavelength ranges. We have also invented a mathematical model that enables to evaluate the SN ratio in a given microtremor field, and have applied it to real data. Theory predicts that our CCA method underestimates the phase velocities when noise is present. Using the evaluated SN ratio and the phase velocity dispersion curve model, we have calculated the apparent values of phase velocities which theory expects should be obtained by our CCA method in long-wavelength ranges, and have confirmed that the outcome agreed very well with the phase velocities estimated from real data. This demonstrates that the mathematical assumptions, on which our CCA method relies, remains valid over a wide range of wavelengths which we are examining, and also implies that, even in the absence of a priori knowledge of the phase velocity dispersion curve, the SN ratio evaluated with our mathematical model could be used to identify the resolution limit of our CCA method in long-wavelength ranges. We have thus been able to demonstrate, on the basis of theoretical considerations and real data analysis, both the capabilities and limitations of our CCA method.

Bridging Scales: A Model-Based Assessment of the Technical Tidal-Stream Energy Resource off Massachusetts, USA

NASA Astrophysics Data System (ADS)

Cowles, G. W.; Hakim, A.; Churchill, J. H.

2016-02-01

Tidal in-stream energy conversion (TISEC) facilities provide a highly predictable and dependable source of energy. Given the economic and social incentives to migrate towards renewable energy sources there has been tremendous interest in the technology. Key challenges to the design process stem from the wide range of problem scales extending from device to array. In the present approach we apply a multi-model approach to bridge the scales of interest and select optimal device geometries to estimate the technical resource for several realistic sites in the coastal waters of Massachusetts, USA. The approach links two computational models. To establish flow conditions at site scales ( 10m), a barotropic setup of the unstructured grid ocean model FVCOM is employed. The model is validated using shipboard and fixed ADCP as well as pressure data. For device scale, the structured multiblock flow solver SUmb is selected. A large ensemble of simulations of 2D cross-flow tidal turbines is used to construct a surrogate design model. The surrogate model is then queried using velocity profiles extracted from the tidal model to determine the optimal geometry for the conditions at each site. After device selection, the annual technical yield of the array is evaluated with FVCOM using a linear momentum actuator disk approach to model the turbines. Results for several key Massachusetts sites including comparison with theoretical approaches will be presented.

Validation of buoyancy driven spectral tensor model using HATS data

NASA Astrophysics Data System (ADS)

Chougule, A.; Mann, J.; Kelly, M.; Larsen, G. C.

2016-09-01

We present a homogeneous spectral tensor model for wind velocity and temperature fluctuations, driven by mean vertical shear and mean temperature gradient. Results from the model, including one-dimensional velocity and temperature spectra and the associated co-spectra, are shown in this paper. The model also reproduces two-point statistics, such as coherence and phases, via cross-spectra between two points separated in space. Model results are compared with observations from the Horizontal Array Turbulence Study (HATS) field program (Horst et al. 2004). The spectral velocity tensor in the model is described via five parameters: the dissipation rate (ɛ), length scale of energy-containing eddies (L), a turbulence anisotropy parameter (Γ), gradient Richardson number (Ri) representing the atmospheric stability and the rate of destruction of temperature variance (ηθ).

Image Reconstruction in Radio Astronomy with Non-Coplanar Synthesis Arrays

NASA Astrophysics Data System (ADS)

Goodrick, L.

2015-03-01

Traditional radio astronomy imaging techniques assume that the interferometric array is coplanar, with a small field of view, and that the two-dimensional Fourier relationship between brightness and visibility remains valid, allowing the Fast Fourier Transform to be used. In practice, to acquire more accurate data, the non-coplanar baseline effects need to be incorporated, as small height variations in the array plane introduces the w spatial frequency component. This component adds an additional phase shift to the incoming signals. There are two approaches to account for the non-coplanar baseline effects: either the full three-dimensional brightness and visibility model can be used to reconstruct an image, or the non-coplanar effects can be removed, reducing the three dimensional relationship to that of the two-dimensional one. This thesis describes and implements the w-projection and w-stacking algorithms. The aim of these algorithms is to account for the phase error introduced by non-coplanar synthesis arrays configurations, making the recovered visibilities more true to the actual brightness distribution model. This is done by reducing the 3D visibilities to a 2D visibility model. The algorithms also have the added benefit of wide-field imaging, although w-stacking supports a wider field of view at the cost of more FFT bin support. For w-projection, the w-term is accounted for in the visibility domain by convolving it out of the problem with a convolution kernel, allowing the use of the two-dimensional Fast Fourier Transform. Similarly, the w-Stacking algorithm applies a phase correction in the image domain to image layers to produce an intensity model that accounts for the non-coplanar baseline effects. This project considers the KAT7 array for simulation and analysis of the limitations and advantages of both the algorithms. Additionally, a variant of the Högbom CLEAN algorithm was used which employs contour trimming for extended source emission flagging. The CLEAN algorithm is an iterative two-dimensional deconvolution method that can further improve image fidelity by removing the effects of the point spread function which can obscure source data.

Improving efficiency of a small forensic DNA laboratory: validation of robotic assays and evaluation of microcapillary array device.

PubMed

Crouse, Cecelia A; Yeung, Stephanie; Greenspoon, Susan; McGuckian, Amy; Sikorsky, Julie; Ban, Jeff; Mathies, Richard

2005-08-01

To present validation studies performed for the implementation of existing and new technologies to increase the efficiency in the forensic DNA Section of the Palm Beach County Sheriff's Office (PBSO) Crime Laboratory. Using federally funded grants, internal support, and an external Process Mapping Team, the PBSO collaborated with forensic vendors, universities, and other forensic laboratories to enhance DNA testing procedures, including validation of the DNA IQ magnetic bead extraction system, robotic DNA extraction using the BioMek2000, the ABI7000 Sequence Detection System, and is currently evaluating a micro Capillary Array Electrophoresis device. The PBSO successfully validated and implemented both manual and automated Promega DNA IQ magnetic bead extractions system, which have increased DNA profile results from samples with low DNA template concentrations. The Beckman BioMek2000 DNA robotic workstation has been validated for blood, tissue, bone, hair, epithelial cells (touch evidence), and mixed stains such as semen. There has been a dramatic increase in the number of samples tested per case since implementation of the robotic extraction protocols. The validation of the ABI7000 real-time quantitative polymerase chain reaction (qPCR) technology and the single multiplex short tandem repeat (STR) PowerPlex16 BIO amplification system has provided both a time and a financial benefit. In addition, the qPCR system allows more accurate DNA concentration data and the PowerPlex 16 BIO multiplex generates DNA profiles data in half the time when compared to PowerPlex1.1 and PowerPlex2.1 STR systems. The PBSO's future efficiency requirements are being addressed through collaboration with the University of California at Berkeley and the Virginia Division of Forensic Science to validate microcapillary array electrophoresis instrumentation. Initial data demonstrated the electrophoresis of 96 samples in less than twenty minutes. The PBSO demonstrated, through the validation of more efficient extraction and quantification technology, an increase in the number of evidence samples tested using robotic/DNA IQ magnetic bead DNA extraction, a decrease in the number of negative samples amplified due to qPCR and implementation of a single multiplex amplification system. In addition, initial studies show the microcapillary array electrophoresis device (microCAE) evaluation results provide greater sensitivity and faster STR analysis output than current platforms.

The Study of High-Speed Surface Dynamics Using a Pulsed Proton Beam

NASA Astrophysics Data System (ADS)

Buttler, William; Stone, Benjamin; Oro, David; Dimonte, Guy; Preston, Dean; Cherne, Frank; Germann, Timothy; Terrones, Guillermo; Tupa, Dale

2011-06-01

Los Alamos National Laboratory is presently engaged in development and implementation of ejecta source term and transport models for integration into LANL hydrodynamic computer codes. Experimental support for the effort spans a broad array of activities, including ejecta source term measurements from machine roughened Sn surfaces shocked by HE or flyer plates. Because the underlying postulate for ejecta formation is that ejecta are characterized by Richtmyer-Meshkov instability (RMI) phenomena, a key element of the theory and modeling effort centers on validation and verification RMI experiments at the LANSCE Proton Radiography Facility (pRad) to compare with modeled ejecta measurements. Here we present experimental results used to define and validate a physics based ejecta model together with remarkable, unexpected results of Sn instability growth in vacuum and gasses, and Sn and Cu RM growth that reveals the sensitivity of the RM instability to the yield strength of the material, Cu. The motivation of this last subject, RM growth linked to material strength, is to probe the shock pressure regions over which ejecta begins to form. Presenter

Evaluating the Factor Validity of the Children's Organizational Skills Scale in Youth with ADHD.

PubMed

Molitor, Stephen J; Langberg, Joshua M; Evans, Steven W; Dvorsky, Melissa R; Bourchtein, Elizaveta; Eddy, Laura D; Smith, Zoe R; Oddo, Lauren E

2017-06-01

Children and adolescents with ADHD often have difficulties with organization, time management, and planning (OTMP) skills, and these skills are a common target of intervention. A limited array of tools for measuring these abilities in youth is available, and one of the most prominent measures is the Children's Organizational Skills Scale (COSS). Although the COSS fills an important need, a replication of the COSS factor structure outside of initial measure development has not been conducted in any population. Given that the COSS is frequently used in ADHD research, the current study evaluated the factor structure of the parent-rated COSS in a sample ( N = 619) of adolescents with ADHD. Results indicated that the original factor structure could be replicated, although the use of item parcels appeared to affect model fit statistics. An alternative bi-factor model was also tested that did not require the use of parcels, with results suggesting similar model fit in comparison to the original factor structure. Exploratory validity tests indicated that the domain-general factor of the bi-factor model appears related to broad executive functioning abilities.

A Semi-flexible 64-channel Receive-only Phased Array for Pediatric Body MRI at 3T

PubMed Central

Zhang, Tao; Grafendorfer, Thomas; Cheng, Joseph Y.; Ning, Peigang; Rainey, Bob; Giancola, Mark; Ortman, Sarah; Robb, Fraser J.; Calderon, Paul D.; Hargreaves, Brian A.; Lustig, Michael; Scott, Greig C.; Pauly, John M.; Vasanawala, Shreyas S.

2015-01-01

Purpose To design, construct, and validate a semi-flexible 64-channel receive-only phased array for pediatric body MRI at 3T. Methods A 64-channel receive-only phased array was developed and constructed. The designed flexible coil can easily conform to different patient sizes with non-overlapping coil elements in the transverse plane. It can cover a field of view of up to 44 × 28 cm2 and removes the need for coil repositioning for body MRI patients with multiple clinical concerns. The 64-channel coil was compared with a 32-channel standard coil for signal-to-noise ratio (SNR) and parallel imaging performances on different phantoms. With IRB approval and informed consent/assent, the designed coil was validated on 21 consecutive pediatric patients. Results The pediatric coil provided higher SNR than the standard coil on different phantoms, with the averaged SNR gain at least 23% over a depth of 7 cm along the cross-section of phantoms. It also achieved better parallel imaging performance under moderate acceleration factors. Good image quality (average score 4.6 out of 5) was achieved using the developed pediatric coil in the clinical studies. Conclusion A 64-channel semi-flexible receive-only phased array has been developed and validated to facilitate high quality pediatric body MRI at 3T. PMID:26418283

Design of a Synthetic Aperture Array to Support Experiments in Active Control of Scattering

DTIC Science & Technology

1990-06-01

becomes necessary to validate the theory and test the control system algorithms . While experiments in open water would be most like the anticipated...mathematical development of the beamforming algorithms used as well as an estimate of their applicability to the specifics of beamforming in a reverberant...Chebyshev array have been proposed. The method used in ARRAY, a nested product algorithm , proposed by Bresler [21] is recommended by Pozar [19] and

Array Detector Modules for Spent Fuel Verification

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bolotnikov, Aleksey

Brookhaven National Laboratory (BNL) proposes to evaluate the arrays of position-sensitive virtual Frisch-grid (VFG) detectors for passive gamma-ray emission tomography (ET) to verify the spent fuel in storage casks before storing them in geo-repositories. Our primary objective is to conduct a preliminary analysis of the arrays capabilities and to perform field measurements to validate the effectiveness of the proposed array modules. The outcome of this proposal will consist of baseline designs for the future ET system which can ultimately be used together with neutrons detectors. This will demonstrate the usage of this technology in spent fuel storage casks.

High resolution beamforming on large aperture vertical line arrays: Processing synthetic data

NASA Astrophysics Data System (ADS)

Tran, Jean-Marie Q.; Hodgkiss, William S.

1990-09-01

This technical memorandum studies the beamforming of large aperture line arrays deployed vertically in the water column. The work concentrates on the use of high resolution techniques. Two processing strategies are envisioned: (1) full aperture coherent processing which offers in theory the best processing gain; and (2) subaperture processing which consists in extracting subapertures from the array and recombining the angular spectra estimated from these subarrays. The conventional beamformer, the minimum variance distortionless response (MVDR) processor, the multiple signal classification (MUSIC) algorithm and the minimum norm method are used in this study. To validate the various processing techniques, the ATLAS normal mode program is used to generate synthetic data which constitute a realistic signals environment. A deep-water, range-independent sound velocity profile environment, characteristic of the North-East Pacific, is being studied for two different 128 sensor arrays: a very long one cut for 30 Hz and operating at 20 Hz; and a shorter one cut for 107 Hz and operating at 100 Hz. The simulated sound source is 5 m deep. The full aperture and subaperture processing are being implemented with curved and plane wavefront replica vectors. The beamforming results are examined and compared to the ray-theory results produced by the generic sonar model.

Ultrasound Flow Mapping for the Investigation of Crystal Growth.

PubMed

Thieme, Norman; Bonisch, Paul; Meier, Dagmar; Nauber, Richard; Buttner, Lars; Dadzis, Kaspars; Patzold, Olf; Sylla, Lamine; Czarske, Jurgen

2017-04-01

A high energy conversion and cost efficiency are keys for the transition to renewable energy sources, e.g., solar cells. The efficiency of multicrystalline solar cells can be improved by enhancing the understanding of its crystallization process, especially the directional solidification. In this paper, a novel measurement system for the characterization of flow phenomena and solidification processes in low-temperature model experiments on the basis of ultrasound (US) Doppler velocimetry is described. It captures turbulent flow phenomena in two planes with a frame rate of 3.5 Hz and tracks the shape of the solid-liquid interface during multihour experiments. Time-resolved flow mapping is performed using four linear US arrays with a total of 168 transducer elements. Long duration measurements are enabled through an online, field-programmable gate array (FPGA)-based signal processing. Nine single US transducers allow for in situ tracking of a solid-liquid interface. Results of flow and solidification experiments in the model experiment are presented and compared with numerical simulation. The potential of the developed US system for measuring turbulent flows and for tracking the solidification front during a directional crystallization process is demonstrated. The results of the model experiments are in good agreement with numerical calculations and can be used for the validation of numerical models, especially the selection of the turbulence model.

Flow through a very porous obstacle in a shallow channel

PubMed Central

Draper, S.; Nishino, T.; Borthwick, A. G. L.

2017-01-01

A theoretical model, informed by numerical simulations based on the shallow water equations, is developed to predict the flow passing through and around a uniform porous obstacle in a shallow channel, where background friction is important. This problem is relevant to a number of practical situations, including flow through aquatic vegetation, the performance of arrays of turbines in tidal channels and hydrodynamic forces on offshore structures. To demonstrate this relevance, the theoretical model is used to (i) reinterpret core flow velocities in existing laboratory-based data for an array of emergent cylinders in shallow water emulating aquatic vegetation and (ii) reassess the optimum arrangement of tidal turbines to generate power in a tidal channel. Comparison with laboratory-based data indicates a maximum obstacle resistance (or minimum porosity) for which the present theoretical model is valid. When the obstacle resistance is above this threshold the shallow water equations do not provide an adequate representation of the flow, and the theoretical model over-predicts the core flow passing through the obstacle. The second application of the model confirms that natural bed resistance increases the power extraction potential for a partial tidal fence in a shallow channel and alters the optimum arrangement of turbines within the fence. PMID:28484321

Improving Photovoltaic Energy Production with Fiber-Optic Distributed Temperature Sensing

NASA Astrophysics Data System (ADS)

Hausner, M. B.; Berli, M.

2014-12-01

The efficiency of solar photovoltaic (PV) generators declines sharply with increased temperatures. Peak solar exposure often occurs at the same time as peak temperatures, but solar PV installations are typically designed based on solar angle. In temperate areas, the peak temperatures may not be high enough to induce significant efficiency losses. In some of the areas with the greatest potential for solar development, however, summer air temperatures regularly reach 45 °C and PV panel temperatures exceed the air temperatures. Here we present a preliminary model of a PV array intended to optimize solar production in a hot and arid environment. The model begins with the diurnal and seasonal cycles in the angle and elevation of the sun, but also includes a meteorology-driven energy balance to project the temperatures of the PV panels and supporting structure. The model will be calibrated and parameterized using a solar array at the Desert Research Institute's (DRI) Renewable Energy Deployment and Display (REDD) facility in Reno, Nevada, and validated with a similar array at DRI's Las Vegas campus. Optical fibers will be installed on the PV panels and structural supports and interrogated by a distributed temperature sensor (DTS) to record the spatial and temporal variations in temperature. Combining the simulated panel temperatures, the efficiency-temperature relationship for the panels, and the known solar cycles at a site will allow us to optimize the design of future PV collectors (i.e., the aspect and angle of panels) for given production goals.

Three-dimensional vectorial multifocal arrays created by pseudo-period encoding

NASA Astrophysics Data System (ADS)

Zeng, Tingting; Chang, Chenliang; Chen, Zhaozhong; Wang, Hui-Tian; Ding, Jianping

2018-06-01

Multifocal arrays have been attracting considerable attention recently owing to their potential applications in parallel optical tweezers, parallel single-molecule orientation determination, parallel recording and multifocal multiphoton microscopy. However, the generation of vectorial multifocal arrays with a tailorable structure and polarization state remains a great challenge, and reports on multifocal arrays have hitherto been restricted either to scalar focal spots without polarization versatility or to regular arrays with fixed spacing. In this work, we propose a specific pseudo-period encoding technique to create three-dimensional (3D) vectorial multifocal arrays with the ability to manipulate the position, polarization state and intensity of each focal spot. We experimentally validated the flexibility of our approach in the generation of 3D vectorial multiple spots with polarization multiplicity and position tunability.

Development of a Low-Cost and High-speed Single Event Effects Testers based on Reconfigurable Field Programmable Gate Arrays (FPGA)

NASA Technical Reports Server (NTRS)

Howard, J. W.; Kim, H.; Berg, M.; LaBel, K. A.; Stansberry, S.; Friendlich, M.; Irwin, T.

2006-01-01

A viewgraph presentation on the development of a low cost, high speed tester reconfigurable Field Programmable Gata Array (FPGA) is shown. The topics include: 1) Introduction; 2) Objectives; 3) Tester Descriptions; 4) Tester Validations and Demonstrations; 5) Future Work; and 6) Summary.

Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array

USDA-ARS?s Scientific Manuscript database

A large number of genetic variations have been identified in rice. Such variations must in many cases control phenotypic differences in abiotic stress tolerance and other traits. A single feature polymorphism (SFP) is an oligonucleotide array-based polymorphism which can be used for identification o...

Mapping transcription factor interactome networks using HaloTag protein arrays.

PubMed

Yazaki, Junshi; Galli, Mary; Kim, Alice Y; Nito, Kazumasa; Aleman, Fernando; Chang, Katherine N; Carvunis, Anne-Ruxandra; Quan, Rosa; Nguyen, Hien; Song, Liang; Alvarez, José M; Huang, Shao-Shan Carol; Chen, Huaming; Ramachandran, Niroshan; Altmann, Stefan; Gutiérrez, Rodrigo A; Hill, David E; Schroeder, Julian I; Chory, Joanne; LaBaer, Joshua; Vidal, Marc; Braun, Pascal; Ecker, Joseph R

2016-07-19

Protein microarrays enable investigation of diverse biochemical properties for thousands of proteins in a single experiment, an unparalleled capacity. Using a high-density system called HaloTag nucleic acid programmable protein array (HaloTag-NAPPA), we created high-density protein arrays comprising 12,000 Arabidopsis ORFs. We used these arrays to query protein-protein interactions for a set of 38 transcription factors and transcriptional regulators (TFs) that function in diverse plant hormone regulatory pathways. The resulting transcription factor interactome network, TF-NAPPA, contains thousands of novel interactions. Validation in a benchmarked in vitro pull-down assay revealed that a random subset of TF-NAPPA validated at the same rate of 64% as a positive reference set of literature-curated interactions. Moreover, using a bimolecular fluorescence complementation (BiFC) assay, we confirmed in planta several interactions of biological interest and determined the interaction localizations for seven pairs. The application of HaloTag-NAPPA technology to plant hormone signaling pathways allowed the identification of many novel transcription factor-protein interactions and led to the development of a proteome-wide plant hormone TF interactome network.

Analysis of differential gene expression by bead-based fiber-optic array in nonfunctioning pituitary adenomas.

PubMed

Jiang, Z; Gui, S; Zhang, Y

2011-05-01

Nonfunctioning pituitary adenomas (NFPAs) are relatively common, accounting for 30% of all pituitary adenomas; however, their pathogenesis remains enigmatic. To explore the possible pathogenesis of NFPAs, we used fiber-optic BeadArray to examine gene expression in 5 NFPAs compared with 3 normal pituitaries. 4 differentially expressed genes were chosen randomly for validation by reverse transcriptase-real time quantitative polymerase chain reaction (RT-qPCR). We then analyzed the differentially expressed gene profile with Kyoto Encyclopedia of Genes and Genomes (KEGG). The array analysis indentified significant increases in the expression of 1,402 genes and 383 expressed sequence tags (ESTs), and decreases in 1,697 genes and 113 ESTs in the NFPAs. Bioinformatic and pathway analysis showed that the genes HIGD1B, FAM5C, PMAIP1 and the pathway cell-cycle regulation may play an important role in tumorigenesis and progression of NFPAs. Our data suggest fiber-optic BeadArray combined with pathway analysis of differential gene expression profile appears to be a valid approach for investigating the pathogenesis of tumors. © Georg Thieme Verlag KG Stuttgart · New York.

Cultural consensus modeling to measure transactional sex in Swaziland: Scale building and validation.

PubMed

Fielding-Miller, Rebecca; Dunkle, Kristin L; Cooper, Hannah L F; Windle, Michael; Hadley, Craig

2016-01-01

Transactional sex is associated with increased risk of HIV and gender based violence in southern Africa and around the world. However the typical quantitative operationalization, "the exchange of gifts or money for sex," can be at odds with a wide array of relationship types and motivations described in qualitative explorations. To build on the strengths of both qualitative and quantitative research streams, we used cultural consensus models to identify distinct models of transactional sex in Swaziland. The process allowed us to build and validate emic scales of transactional sex, while identifying key informants for qualitative interviews within each model to contextualize women's experiences and risk perceptions. We used logistic and multinomial logistic regression models to measure associations with condom use and social status outcomes. Fieldwork was conducted between November 2013 and December 2014 in the Hhohho and Manzini regions. We identified three distinct models of transactional sex in Swaziland based on 124 Swazi women's emic valuation of what they hoped to receive in exchange for sex with their partners. In a clinic-based survey (n = 406), consensus model scales were more sensitive to condom use than the etic definition. Model consonance had distinct effects on social status for the three different models. Transactional sex is better measured as an emic spectrum of expectations within a relationship, rather than an etic binary relationship type. Cultural consensus models allowed us to blend qualitative and quantitative approaches to create an emicly valid quantitative scale grounded in qualitative context. Copyright © 2015 Elsevier Ltd. All rights reserved.

RANS Simulation (Virtual Blade Model [VBM]) of Array of Three Coaxial Lab Scaled DOE RM1 MHK Turbine with 5D Spacing

DOE Data Explorer

Javaherchi, Teymour

2016-06-08

Attached are the .cas and .dat files along with the required User Defined Functions (UDFs) and look-up table of lift and drag coefficients for the Reynolds Averaged Navier-Stokes (RANS) simulation of three coaxially located lab-scaled DOE RM1 turbine implemented in ANSYS FLUENT CFD-package. The lab-scaled DOE RM1 is a re-design geometry, based of the full scale DOE RM1 design, producing same power output as the full scale model, while operating at matched Tip Speed Ratio values at reachable laboratory Reynolds number (see attached paper). In this case study the flow field around and in the wake of the lab-scaled DOE RM1 turbines in a coaxial array is simulated using Blade Element Model (a.k.a Virtual Blade Model) by solving RANS equations coupled with k-\\omega turbulence closure model. It should be highlighted that in this simulation the actual geometry of the rotor blade is not modeled. The effect of turbine rotating blades are modeled using the Blade Element Theory. This simulation provides an accurate estimate for the performance of each device and structure of their turbulent far wake. The results of these simulations were validated against the developed in-house experimental data. Simulations for other turbine configurations are available upon request.

Novel molecular subtypes of serous and endometrioid ovarian cancer linked to clinical outcome.

PubMed

Tothill, Richard W; Tinker, Anna V; George, Joshy; Brown, Robert; Fox, Stephen B; Lade, Stephen; Johnson, Daryl S; Trivett, Melanie K; Etemadmoghadam, Dariush; Locandro, Bianca; Traficante, Nadia; Fereday, Sian; Hung, Jillian A; Chiew, Yoke-Eng; Haviv, Izhak; Gertig, Dorota; DeFazio, Anna; Bowtell, David D L

2008-08-15

The study aim to identify novel molecular subtypes of ovarian cancer by gene expression profiling with linkage to clinical and pathologic features. Microarray gene expression profiling was done on 285 serous and endometrioid tumors of the ovary, peritoneum, and fallopian tube. K-means clustering was applied to identify robust molecular subtypes. Statistical analysis identified differentially expressed genes, pathways, and gene ontologies. Laser capture microdissection, pathology review, and immunohistochemistry validated the array-based findings. Patient survival within k-means groups was evaluated using Cox proportional hazards models. Class prediction validated k-means groups in an independent dataset. A semisupervised survival analysis of the array data was used to compare against unsupervised clustering results. Optimal clustering of array data identified six molecular subtypes. Two subtypes represented predominantly serous low malignant potential and low-grade endometrioid subtypes, respectively. The remaining four subtypes represented higher grade and advanced stage cancers of serous and endometrioid morphology. A novel subtype of high-grade serous cancers reflected a mesenchymal cell type, characterized by overexpression of N-cadherin and P-cadherin and low expression of differentiation markers, including CA125 and MUC1. A poor prognosis subtype was defined by a reactive stroma gene expression signature, correlating with extensive desmoplasia in such samples. A similar poor prognosis signature could be found using a semisupervised analysis. Each subtype displayed distinct levels and patterns of immune cell infiltration. Class prediction identified similar subtypes in an independent ovarian dataset with similar prognostic trends. Gene expression profiling identified molecular subtypes of ovarian cancer of biological and clinical importance.

SNP markers tightly linked to root knot nematode resistance in grapevine (Vitis cinerea) identified by a genotyping-by-sequencing approach followed by Sequenom MassARRAY validation

PubMed Central

Morales, Norma B.; Moskwa, Sam; Clingeleffer, Peter R.; Thomas, Mark R.

2018-01-01

Plant parasitic nematodes, including root knot nematode Meloidogyne species, cause extensive damage to agriculture and horticultural crops. As Vitis vinifera cultivars are susceptible to root knot nematode parasitism, rootstocks resistant to these soil pests provide a sustainable approach to maintain grapevine production. Currently, most of the commercially available root knot nematode resistant rootstocks are highly vigorous and take up excess potassium, which reduces wine quality. As a result, there is a pressing need to breed new root knot nematode resistant rootstocks, which have no impact on wine quality. To develop molecular markers that predict root knot nematode resistance for marker assisted breeding, a genetic approach was employed to identify a root knot nematode resistance locus in grapevine. To this end, a Meloidogyne javanica resistant Vitis cinerea accession was crossed to a susceptible Vitis vinifera cultivar Riesling and results from screening the F1 individuals support a model that root knot nematode resistance, is conferred by a single dominant allele, referred as MELOIDOGYNE JAVANICA RESISTANCE1 (MJR1). Further, MJR1 resistance appears to be mediated by a hypersensitive response that occurs in the root apical meristem. Single nucleotide polymorphisms (SNPs) were identified using genotyping-by-sequencing and results from association and genetic mapping identified the MJR1 locus, which is located on chromosome 18 in the Vitis cinerea accession. Validation of the SNPs linked to the MJR1 locus using a Sequenom MassARRAY platform found that only 50% could be validated. The validated SNPs that flank and co-segregate with the MJR1 locus can be used for marker-assisted selection for Meloidogyne javanica resistance in grapevine. PMID:29462210

SNP markers tightly linked to root knot nematode resistance in grapevine (Vitis cinerea) identified by a genotyping-by-sequencing approach followed by Sequenom MassARRAY validation.

PubMed

Smith, Harley M; Smith, Brady P; Morales, Norma B; Moskwa, Sam; Clingeleffer, Peter R; Thomas, Mark R

2018-01-01

Plant parasitic nematodes, including root knot nematode Meloidogyne species, cause extensive damage to agriculture and horticultural crops. As Vitis vinifera cultivars are susceptible to root knot nematode parasitism, rootstocks resistant to these soil pests provide a sustainable approach to maintain grapevine production. Currently, most of the commercially available root knot nematode resistant rootstocks are highly vigorous and take up excess potassium, which reduces wine quality. As a result, there is a pressing need to breed new root knot nematode resistant rootstocks, which have no impact on wine quality. To develop molecular markers that predict root knot nematode resistance for marker assisted breeding, a genetic approach was employed to identify a root knot nematode resistance locus in grapevine. To this end, a Meloidogyne javanica resistant Vitis cinerea accession was crossed to a susceptible Vitis vinifera cultivar Riesling and results from screening the F1 individuals support a model that root knot nematode resistance, is conferred by a single dominant allele, referred as MELOIDOGYNE JAVANICA RESISTANCE1 (MJR1). Further, MJR1 resistance appears to be mediated by a hypersensitive response that occurs in the root apical meristem. Single nucleotide polymorphisms (SNPs) were identified using genotyping-by-sequencing and results from association and genetic mapping identified the MJR1 locus, which is located on chromosome 18 in the Vitis cinerea accession. Validation of the SNPs linked to the MJR1 locus using a Sequenom MassARRAY platform found that only 50% could be validated. The validated SNPs that flank and co-segregate with the MJR1 locus can be used for marker-assisted selection for Meloidogyne javanica resistance in grapevine.

A newly validated high-performance liquid chromatography method with diode array ultraviolet detection for analysis of the antimalarial drug primaquine in the blood plasma.

PubMed

Carmo, Ana Paula Barbosa do; Borborema, Manoella; Ribeiro, Stephan; De-Oliveira, Ana Cecilia Xavier; Paumgartten, Francisco Jose Roma; Moreira, Davyson de Lima

2017-01-01

Primaquine (PQ) diphosphate is an 8-aminoquinoline antimalarial drug with unique therapeutic properties. It is the only drug that prevents relapses of Plasmodium vivax or Plasmodium ovale infections. In this study, a fast, sensitive, cost-effective, and robust method for the extraction and high-performance liquid chromatography with diode array ultraviolet detection (HPLC-DAD-UV ) analysis of PQ in the blood plasma was developed and validated. After plasma protein precipitation, PQ was obtained by liquid-liquid extraction and analyzed by HPLC-DAD-UV with a modified-silica cyanopropyl column (250mm × 4.6mm i.d. × 5μm) as the stationary phase and a mixture of acetonitrile and 10mM ammonium acetate buffer (pH = 3.80) (45:55) as the mobile phase. The flow rate was 1.0mL·min-1, the oven temperature was 50OC, and absorbance was measured at 264nm. The method was validated for linearity, intra-day and inter-day precision, accuracy, recovery, and robustness. The detection (LOD) and quantification (LOQ) limits were 1.0 and 3.5ng·mL-1, respectively. The method was used to analyze the plasma of female DBA-2 mice treated with 20mg.kg-1 (oral) PQ diphosphate. By combining a simple, low-cost extraction procedure with a sensitive, precise, accurate, and robust method, it was possible to analyze PQ in small volumes of plasma. The new method presents lower LOD and LOQ limits and requires a shorter analysis time and smaller plasma volumes than those of previously reported HPLC methods with DAD-UV detection. The new validated method is suitable for kinetic studies of PQ in small rodents, including mouse models for the study of malaria.

Comprehensive GMO detection using real-time PCR array: single-laboratory validation.

PubMed

Mano, Junichi; Harada, Mioko; Takabatake, Reona; Furui, Satoshi; Kitta, Kazumi; Nakamura, Kosuke; Akiyama, Hiroshi; Teshima, Reiko; Noritake, Hiromichi; Hatano, Shuko; Futo, Satoshi; Minegishi, Yasutaka; Iizuka, Tayoshi

2012-01-01

We have developed a real-time PCR array method to comprehensively detect genetically modified (GM) organisms. In the method, genomic DNA extracted from an agricultural product is analyzed using various qualitative real-time PCR assays on a 96-well PCR plate, targeting for individual GM events, recombinant DNA (r-DNA) segments, taxon-specific DNAs, and donor organisms of the respective r-DNAs. In this article, we report the single-laboratory validation of both DNA extraction methods and component PCR assays constituting the real-time PCR array. We selected some DNA extraction methods for specified plant matrixes, i.e., maize flour, soybean flour, and ground canola seeds, then evaluated the DNA quantity, DNA fragmentation, and PCR inhibition of the resultant DNA extracts. For the component PCR assays, we evaluated the specificity and LOD. All DNA extraction methods and component PCR assays satisfied the criteria set on the basis of previous reports.

A model of head-related transfer functions based on a state-space analysis

NASA Astrophysics Data System (ADS)

Adams, Norman Herkamp

This dissertation develops and validates a novel state-space method for binaural auditory display. Binaural displays seek to immerse a listener in a 3D virtual auditory scene with a pair of headphones. The challenge for any binaural display is to compute the two signals to supply to the headphones. The present work considers a general framework capable of synthesizing a wide variety of auditory scenes. The framework models collections of head-related transfer functions (HRTFs) simultaneously. This framework improves the flexibility of contemporary displays, but it also compounds the steep computational cost of the display. The cost is reduced dramatically by formulating the collection of HRTFs in the state-space and employing order-reduction techniques to design efficient approximants. Order-reduction techniques based on the Hankel-operator are found to yield accurate low-cost approximants. However, the inter-aural time difference (ITD) of the HRTFs degrades the time-domain response of the approximants. Fortunately, this problem can be circumvented by employing a state-space architecture that allows the ITD to be modeled outside of the state-space. Accordingly, three state-space architectures are considered. Overall, a multiple-input, single-output (MISO) architecture yields the best compromise between performance and flexibility. The state-space approximants are evaluated both empirically and psychoacoustically. An array of truncated FIR filters is used as a pragmatic reference system for comparison. For a fixed cost bound, the state-space systems yield lower approximation error than FIR arrays for D>10, where D is the number of directions in the HRTF collection. A series of headphone listening tests are also performed to validate the state-space approach, and to estimate the minimum order N of indiscriminable approximants. For D = 50, the state-space systems yield order thresholds less than half those of the FIR arrays. Depending upon the stimulus uncertainty, a minimum state-space order of 7≤N≤23 appears to be adequate. In conclusion, the proposed state-space method enables a more flexible and immersive binaural display with low computational cost.

A z-gradient array for simultaneous multi-slice excitation with a single-band RF pulse.

PubMed

Ertan, Koray; Taraghinia, Soheil; Sadeghi, Alireza; Atalar, Ergin

2018-07-01

Multi-slice radiofrequency (RF) pulses have higher specific absorption rates, more peak RF power, and longer pulse durations than single-slice RF pulses. Gradient field design techniques using a z-gradient array are investigated for exciting multiple slices with a single-band RF pulse. Two different field design methods are formulated to solve for the required current values of the gradient array elements for the given slice locations. The method requirements are specified, optimization problems are formulated for the minimum current norm and an analytical solution is provided. A 9-channel z-gradient coil array driven by independent, custom-designed gradient amplifiers is used to validate the theory. Performance measures such as normalized slice thickness error, gradient strength per unit norm current, power dissipation, and maximum amplitude of the magnetic field are provided for various slice locations and numbers of slices. Two and 3 slices are excited by a single-band RF pulse in simulations and phantom experiments. The possibility of multi-slice excitation with a single-band RF pulse using a z-gradient array is validated in simulations and phantom experiments. Magn Reson Med 80:400-412, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

Modeling Array Stations in SIG-VISA

NASA Astrophysics Data System (ADS)

Ding, N.; Moore, D.; Russell, S.

2013-12-01

We add support for array stations to SIG-VISA, a system for nuclear monitoring using probabilistic inference on seismic signals. Array stations comprise a large portion of the IMS network; they can provide increased sensitivity and more accurate directional information compared to single-component stations. Our existing model assumed that signals were independent at each station, which is false when lots of stations are close together, as in an array. The new model removes that assumption by jointly modeling signals across array elements. This is done by extending our existing Gaussian process (GP) regression models, also known as kriging, from a 3-dimensional single-component space of events to a 6-dimensional space of station-event pairs. For each array and each event attribute (including coda decay, coda height, amplitude transfer and travel time), we model the joint distribution across array elements using a Gaussian process that learns the correlation lengthscale across the array, thereby incorporating information of array stations into the probabilistic inference framework. To evaluate the effectiveness of our model, we perform ';probabilistic beamforming' on new events using our GP model, i.e., we compute the event azimuth having highest posterior probability under the model, conditioned on the signals at array elements. We compare the results from our probabilistic inference model to the beamforming currently performed by IMS station processing.

Development and validation of the Axiom(®) Apple480K SNP genotyping array.

PubMed

Bianco, Luca; Cestaro, Alessandro; Linsmith, Gareth; Muranty, Hélène; Denancé, Caroline; Théron, Anthony; Poncet, Charles; Micheletti, Diego; Kerschbamer, Emanuela; Di Pierro, Erica A; Larger, Simone; Pindo, Massimo; Van de Weg, Eric; Davassi, Alessandro; Laurens, François; Velasco, Riccardo; Durel, Charles-Eric; Troggio, Michela

2016-04-01

Cultivated apple (Malus × domestica Borkh.) is one of the most important fruit crops in temperate regions, and has great economic and cultural value. The apple genome is highly heterozygous and has undergone a recent duplication which, combined with a rapid linkage disequilibrium decay, makes it difficult to perform genome-wide association (GWA) studies. Single nucleotide polymorphism arrays offer highly multiplexed assays at a relatively low cost per data point and can be a valid tool for the identification of the markers associated with traits of interest. Here, we describe the development and validation of a 487K SNP Affymetrix Axiom(®) genotyping array for apple and discuss its potential applications. The array has been built from the high-depth resequencing of 63 different cultivars covering most of the genetic diversity in cultivated apple. The SNPs were chosen by applying a focal points approach to enrich genic regions, but also to reach a uniform coverage of non-genic regions. A total of 1324 apple accessions, including the 92 progenies of two mapping populations, have been genotyped with the Axiom(®) Apple480K to assess the effectiveness of the array. A large majority of SNPs (359 994 or 74%) fell in the stringent class of poly high resolution polymorphisms. We also devised a filtering procedure to identify a subset of 275K very robust markers that can be safely used for germplasm surveys in apple. The Axiom(®) Apple480K has now been commercially released both for public and proprietary use and will likely be a reference tool for GWA studies in apple. © 2016 The Authors The Plant Journal © 2016 John Wiley & Sons Ltd.

Use of High-resolution WRF Simulations to Forecast Lightning Threat

NASA Technical Reports Server (NTRS)

McCaul, William E.; LaCasse, K.; Goodman, S. J.

2006-01-01

Recent observational studies have confirmed the existence of a robust statistical relationship between lightning flash rates and the amount of large precipitating ice hydrometeors in storms. This relationship is exploited, in conjunction with the capabilities of recent forecast models such as WRF, to forecast the threat of lightning from convective storms using the output fields from the model forecasts. The simulated vertical flux of graupel at -15C is used in this study as a proxy for charge separation processes and their associated lightning risk. Six-h simulations are conducted for a number of case studies for which three-dimensional lightning validation data from the North Alabama Lightning Mapping Array are available. Experiments indicate that initialization of the WRF model on a 2 km grid using Eta boundary conditions, Doppler radar radial velocity and reflectivity fields, and METAR and ACARS data yield the most realistic simulations. An array of subjective and objective statistical metrics are employed to document the utility of the WRF forecasts. The simulation results are also compared to other more traditional means of forecasting convective storms, such as those based on inspection of the convective available potential energy field.

Development and application of a validated stability-indicating high-performance liquid chromatographic method using photodiode array detection for simultaneous determination of granisetron, methylparaben, propylparaben, sodium benzoate, and their main degradation products in oral pharmaceutical preparations.

PubMed

Hewala, Ismail; El-Fatatry, Hamed; Emam, Ehab; Mabrouk, Mokhtar

2011-01-01

A simple, rapid, and sensitive RP-HPLC method using photodiode array detection was developed and validated for the simultaneous determination of granisetron hydrochloride, 1-methyl-1H-indazole-3-carboxylic acid (the main degradation product of granisetron), sodium benzoate, methylparaben, propylparaben, and 4-hydroxybenzoic acid (the main degradation product of parabens) in granisetron oral drops and solutions. The separation of the compounds was achieved within 8 min on a SymmetryShield RP18 column (100 x 4.6 mm id, 3.5 microm particle size) using the mobile phase acetonitrile--0.05 M KH2PO4 buffered to pH 3 using H3PO4 (3+7, v/v). The photodiode array detector was used to test the purity of the peaks, and the chromatograms were extracted at 240 nm. The method was validated, and validation acceptance criteria were met in all cases. The robust method was successfully applied to the determination of granisetron and preservatives, as well as their degradation products in different batches of granisetron oral drops and solutions. The method proved to be sensitive for determination down to 0.04% (w/w) of granisetron degradation product relative to granisetron and 0.03% (w/w) 4-hydroxybenzoic acid relative to total parabens.

Comparing Satellite Rainfall Estimates with Rain-Gauge Data: Optimal Strategies Suggested by a Spectral Model

NASA Technical Reports Server (NTRS)

Bell, Thomas L.; Kundu, Prasun K.; Lau, William K. M. (Technical Monitor)

2002-01-01

Validation of satellite remote-sensing methods for estimating rainfall against rain-gauge data is attractive because of the direct nature of the rain-gauge measurements. Comparisons of satellite estimates to rain-gauge data are difficult, however, because of the extreme variability of rain and the fact that satellites view large areas over a short time while rain gauges monitor small areas continuously. In this paper, a statistical model of rainfall variability developed for studies of sampling error in averages of satellite data is used to examine the impact of spatial and temporal averaging of satellite and gauge data on intercomparison results. The model parameters were derived from radar observations of rain, but the model appears to capture many of the characteristics of rain-gauge data as well. The model predicts that many months of data from areas containing a few gauges are required to validate satellite estimates over the areas, and that the areas should be of the order of several hundred km in diameter. Over gauge arrays of sufficiently high density, the optimal areas and averaging times are reduced. The possibility of using time-weighted averages of gauge data is explored.

Geometric modeling of the temporal bone for cochlea implant simulation

NASA Astrophysics Data System (ADS)

Todd, Catherine A.; Naghdy, Fazel; O'Leary, Stephen

2004-05-01

The first stage in the development of a clinically valid surgical simulator for training otologic surgeons in performing cochlea implantation is presented. For this purpose, a geometric model of the temporal bone has been derived from a cadaver specimen using the biomedical image processing software package Analyze (AnalyzeDirect, Inc) and its three-dimensional reconstruction is examined. Simulator construction begins with registration and processing of a Computer Tomography (CT) medical image sequence. Important anatomical structures of the middle and inner ear are identified and segmented from each scan in a semi-automated threshold-based approach. Linear interpolation between image slices produces a three-dimensional volume dataset: the geometrical model. Artefacts are effectively eliminated using a semi-automatic seeded region-growing algorithm and unnecessary bony structures are removed. Once validated by an Ear, Nose and Throat (ENT) specialist, the model may be imported into the Reachin Application Programming Interface (API) (Reachin Technologies AB) for visual and haptic rendering associated with a virtual mastoidectomy. Interaction with the model is realized with haptics interfacing, providing the user with accurate torque and force feedback. Electrode array insertion into the cochlea will be introduced in the final stage of design.

Adjustment of Turbulent Boundary-Layer Flow to Idealized Urban Surfaces: A Large-Eddy Simulation Study

NASA Astrophysics Data System (ADS)

Cheng, Wai-Chi; Porté-Agel, Fernando

2015-05-01

Large-eddy simulations (LES) are performed to simulate the atmospheric boundary-layer (ABL) flow through idealized urban canopies represented by uniform arrays of cubes in order to better understand atmospheric flow over rural-to-urban surface transitions. The LES framework is first validated with wind-tunnel experimental data. Good agreement between the simulation results and the experimental data are found for the vertical and spanwise profiles of the mean velocities and velocity standard deviations at different streamwise locations. Next, the model is used to simulate ABL flows over surface transitions from a flat homogeneous terrain to aligned and staggered arrays of cubes with height . For both configurations, five different frontal area densities , equal to 0.028, 0.063, 0.111, 0.174 and 0.250, are considered. Within the arrays, the flow is found to adjust quickly and shows similar structure to the wake of the cubes after the second row of cubes. An internal boundary layer is identified above the cube arrays and found to have a similar depth in all different cases. At a downstream location where the flow immediately above the cube array is already adjusted to the surface, the spatially-averaged velocity is found to have a logarithmic profile in the vertical. The values of the displacement height are found to be quite insensitive to the canopy layout (aligned vs. staggered) and increase roughly from to as increases from 0.028 to 0.25. Relatively larger values of the aerodynamic roughness length are obtained for the staggered arrays, compared with the aligned cases, and a maximum value of is found at for both configurations. By explicitly calculating the drag exerted by the cubes on the flow and the drag coefficients of the cubes using our LES results, and comparing the results with existing theoretical expressions, we show that the larger values of for the staggered arrays are related to the relatively larger drag coefficients of the cubes for that configuration compared with the aligned one. The effective mixing length within and above different cube arrays is also calculated and a local maximum of within the canopy is found in all the cases, with values ranging from to . These patterns of are different from those used in existing urban canopy models.

Study of an array of two circular jets impinging on a flat surface

NASA Astrophysics Data System (ADS)

Simionescu, Ştefan-Mugur; Dhondoo, Nilesh; Bălan, Corneliu

2018-02-01

In this study, the flow characteristics of an array of two circular, laminar air jets impinging on a smooth solid wall are experimentally and numerically investigated. Direct visualizations using high speed/resolution camera are performed. The evolution of the vortical structures in the area where the jet is deflected from axial to radial direction is emphasized, as well as the interaction between the two jets. A set of CFD numerical simulations in 2D flow domains are performed by using the commercial software Fluent, in the context of Reynolds-averaged Navier-Stokes (RANS) modeling. The numerical resultsare compared and validated with the experiments. The vorticity number is computed and plotted at two different positions from the jet nozzle, and a study of its distribution gives a clue on how the jets are interacting with each other in the proximity of the solid wall.

Coherent and Noncoherent Joint Processing of Sonar for Detection of Small Targets in Shallow Water.

PubMed

Pan, Xiang; Jiang, Jingning; Li, Si; Ding, Zhenping; Pan, Chen; Gong, Xianyi

2018-04-10

A coherent-noncoherent joint processing framework is proposed for active sonar to combine diversity gain and beamforming gain for detection of a small target in shallow water environments. Sonar utilizes widely-spaced arrays to sense environments and illuminate a target of interest from multiple angles. Meanwhile, it exploits spatial diversity for time-reversal focusing to suppress reverberation, mainly strong bottom reverberation. For enhancement of robustness of time-reversal focusing, an adaptive iterative strategy is utilized in the processing framework. A probing signal is firstly transmitted and echoes of a likely target are utilized as steering vectors for the second transmission. With spatial diversity, target bearing and range are estimated using a broadband signal model. Numerical simulations show that the novel sonar outperforms the traditional phased-array sonar due to benefits of spatial diversity. The effectiveness of the proposed framework has been validated by localization of a small target in at-lake experiments.

seXY: a tool for sex inference from genotype arrays.

PubMed

Qian, David C; Busam, Jonathan A; Xiao, Xiangjun; O'Mara, Tracy A; Eeles, Rosalind A; Schumacher, Frederick R; Phelan, Catherine M; Amos, Christopher I

2017-02-15

Checking concordance between reported sex and genotype-inferred sex is a crucial quality control measure in genome-wide association studies (GWAS). However, limited insights exist regarding the true accuracy of software that infer sex from genotype array data. We present seXY, a logistic regression model trained on both X chromosome heterozygosity and Y chromosome missingness, that consistently demonstrated >99.5% sex inference accuracy in cross-validation for 889 males and 5,361 females enrolled in prostate cancer and ovarian cancer GWAS. Compared to PLINK, one of the most popular tools for sex inference in GWAS that assesses only X chromosome heterozygosity, seXY achieved marginally better male classification and 3% more accurate female classification. https://github.com/Christopher-Amos-Lab/seXY. Christopher.I.Amos@dartmouth.edu. Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Robust Electrical Transfer System (RETS) for Solar Array Drive Mechanism SlipRing Assembly

NASA Astrophysics Data System (ADS)

Bommottet, Daniel; Bossoney, Luc; Schnyder, Ralph; Howling, Alan; Hollenstein, Christoph

2013-09-01

Demands for robust and reliable power transmission systems for sliprings for SADM (Solar Array Drive Mechanism) are increasing steadily. As a consequence, it is required to know their performances regarding the voltage breakdown limit.An understanding of the overall shape of the breakdown voltage versus pressure curve is established, based on experimental measurements of DC (Direct Current) gas breakdown in complex geometries compared with a numerical simulation model.In addition a detailed study was made of the functional behaviour of an entire wing of satellite in a like- operational mode, comprising the solar cells, the power transmission lines, the SRA (SlipRing Assembly), the power S3R (Sequential Serial/shunt Switching Regulators) and the satellite load to simulate the electrical power consumption.A test bench able to measure automatically the: a)breakdown voltage versus pressure curve and b)the functional switching performances, was developed and validated.

Research and Analysis on the Localization of a 3-D Single Source in Lossy Medium Using Uniform Circular Array

PubMed Central

Xue, Bing; Qu, Xiaodong; Fang, Guangyou; Ji, Yicai

2017-01-01

In this paper, the methods and analysis for estimating the location of a three-dimensional (3-D) single source buried in lossy medium are presented with uniform circular array (UCA). The mathematical model of the signal in the lossy medium is proposed. Using information in the covariance matrix obtained by the sensors’ outputs, equations of the source location (azimuth angle, elevation angle, and range) are obtained. Then, the phase and amplitude of the covariance matrix function are used to process the source localization in the lossy medium. By analyzing the characteristics of the proposed methods and the multiple signal classification (MUSIC) method, the computational complexity and the valid scope of these methods are given. From the results, whether the loss is known or not, we can choose the best method for processing the issues (localization in lossless medium or lossy medium). PMID:28574467

Surface Current Density Mapping for Identification of Gastric Slow Wave Propagation

PubMed Central

Bradshaw, L. A.; Cheng, L. K.; Richards, W. O.; Pullan, A. J.

2009-01-01

The magnetogastrogram records clinically relevant parameters of the electrical slow wave of the stomach noninvasively. Besides slow wave frequency, gastric slow wave propagation velocity is a potentially useful clinical indicator of the state of health of gastric tissue, but it is a difficult parameter to determine from noninvasive bioelectric or biomagnetic measurements. We present a method for computing the surface current density (SCD) from multichannel magnetogastrogram recordings that allows computation of the propagation velocity of the gastric slow wave. A moving dipole source model with hypothetical as well as realistic biomagnetometer parameters demonstrates that while a relatively sparse array of magnetometer sensors is sufficient to compute a single average propagation velocity, more detailed information about spatial variations in propagation velocity requires higher density magnetometer arrays. Finally, the method is validated with simultaneous MGG and serosal EMG measurements in a porcine subject. PMID:19403355

Signal transfer within a cultured asymmetric cortical neuron circuit

NASA Astrophysics Data System (ADS)

Isomura, Takuya; Shimba, Kenta; Takayama, Yuzo; Takeuchi, Akimasa; Kotani, Kiyoshi; Jimbo, Yasuhiko

2015-12-01

Objective. Simplified neuronal circuits are required for investigating information representation in nervous systems and for validating theoretical neural network models. Here, we developed patterned neuronal circuits using micro fabricated devices, comprising a micro-well array bonded to a microelectrode-array substrate. Approach. The micro-well array consisted of micrometre-scale wells connected by tunnels, all contained within a silicone slab called a micro-chamber. The design of the micro-chamber confined somata to the wells and allowed axons to grow through the tunnels bidirectionally but with a designed, unidirectional bias. We guided axons into the point of the arrow structure where one of the two tunnel entrances is located, making that the preferred direction. Main results. When rat cortical neurons were cultured in the wells, their axons grew through the tunnels and connected to neurons in adjoining wells. Unidirectional burst transfers and other asymmetric signal-propagation phenomena were observed via the substrate-embedded electrodes. Seventy-nine percent of burst transfers were in the forward direction. We also observed rapid propagation of activity from sites of local electrical stimulation, and significant effects of inhibitory synapse blockade on bursting activity. Significance. These results suggest that this simple, substrate-controlled neuronal circuit can be applied to develop in vitro models of the function of cortical microcircuits or deep neural networks, better to elucidate the laws governing the dynamics of neuronal networks.

Signal transfer within a cultured asymmetric cortical neuron circuit.

PubMed

Isomura, Takuya; Shimba, Kenta; Takayama, Yuzo; Takeuchi, Akimasa; Kotani, Kiyoshi; Jimbo, Yasuhiko

2015-12-01

Simplified neuronal circuits are required for investigating information representation in nervous systems and for validating theoretical neural network models. Here, we developed patterned neuronal circuits using micro fabricated devices, comprising a micro-well array bonded to a microelectrode-array substrate. The micro-well array consisted of micrometre-scale wells connected by tunnels, all contained within a silicone slab called a micro-chamber. The design of the micro-chamber confined somata to the wells and allowed axons to grow through the tunnels bidirectionally but with a designed, unidirectional bias. We guided axons into the point of the arrow structure where one of the two tunnel entrances is located, making that the preferred direction. When rat cortical neurons were cultured in the wells, their axons grew through the tunnels and connected to neurons in adjoining wells. Unidirectional burst transfers and other asymmetric signal-propagation phenomena were observed via the substrate-embedded electrodes. Seventy-nine percent of burst transfers were in the forward direction. We also observed rapid propagation of activity from sites of local electrical stimulation, and significant effects of inhibitory synapse blockade on bursting activity. These results suggest that this simple, substrate-controlled neuronal circuit can be applied to develop in vitro models of the function of cortical microcircuits or deep neural networks, better to elucidate the laws governing the dynamics of neuronal networks.

Contextual Compression of Large-Scale Wind Turbine Array Simulations: Preprint

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gruchalla, Kenny M; Brunhart-Lupo, Nicholas J; Potter, Kristin C

Data sizes are becoming a critical issue particularly for HPC applications. We have developed a user-driven lossy wavelet-based storage model to facilitate the analysis and visualization of large-scale wind turbine array simulations. The model stores data as heterogeneous blocks of wavelet coefficients, providing high-fidelity access to user-defined data regions believed the most salient, while providing lower-fidelity access to less salient regions on a block-by-block basis. In practice, by retaining the wavelet coefficients as a function of feature saliency, we have seen data reductions in excess of 94 percent, while retaining lossless information in the turbine-wake regions most critical to analysismore » and providing enough (low-fidelity) contextual information in the upper atmosphere to track incoming coherent turbulent structures. Our contextual wavelet compression approach has allowed us to deliver interactive visual analysis while providing the user control over where data loss, and thus reduction in accuracy, in the analysis occurs. We argue this reduced but contexualized representation is a valid approach and encourages contextual data management.« less

Contextual Compression of Large-Scale Wind Turbine Array Simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gruchalla, Kenny M; Brunhart-Lupo, Nicholas J; Potter, Kristin C

Data sizes are becoming a critical issue particularly for HPC applications. We have developed a user-driven lossy wavelet-based storage model to facilitate the analysis and visualization of large-scale wind turbine array simulations. The model stores data as heterogeneous blocks of wavelet coefficients, providing high-fidelity access to user-defined data regions believed the most salient, while providing lower-fidelity access to less salient regions on a block-by-block basis. In practice, by retaining the wavelet coefficients as a function of feature saliency, we have seen data reductions in excess of 94 percent, while retaining lossless information in the turbine-wake regions most critical to analysismore » and providing enough (low-fidelity) contextual information in the upper atmosphere to track incoming coherent turbulent structures. Our contextual wavelet compression approach has allowed us to deliver interative visual analysis while providing the user control over where data loss, and thus reduction in accuracy, in the analysis occurs. We argue this reduced but contextualized representation is a valid approach and encourages contextual data management.« less

Development of a solvent-free analytical method for paracetamol quantitative determination in Blood Brain Barrier in vitro model.

PubMed

Langlois, Marie-Hélène; Vekris, Antonios; Bousses, Christine; Mordelet, Elodie; Buhannic, Nathalie; Séguard, Céline; Couraud, Pierre-Olivier; Weksler, Babette B; Petry, Klaus G; Gaudin, Karen

2015-04-15

A Reversed Phase-High Performance Liquid Chromatography/Diode Array Detection method was developed and validated for paracetamol quantification in cell culture fluid from an in vitro Blood Brain Barrier model. The chromatographic method and sample preparation were developed using only aqueous solvents. The column was a XTerra RP18 150 × 4.6mm, 3.5 μm with a guard column XTerra RP18 20 × 4.6 mm, 3.5 μm at 35 °C and the mobile phase was composed by 100% formate buffer 20 mM at pH 4 and flow rate was set at 1 mL/min. The detection was at 242 nm. The sample was injected at 10 μL. Validation was performed using the accuracy profile approach. The analytical procedure was validated with the acceptance limits at ± 10% over a range of concentration from 1 to 58 mg L(-1). The procedure was then used in routine to determine paracetamol concentration in a brain blood barrier in vitro model. Application of the Unither paracetamol formulation in Blood Brain Barrier model allowed the determination and comparison of the transcellular passage of paracetamol at 37 °C and 4 °C, that excludes paracellular or non specific leakage. Copyright © 2015 Elsevier B.V. All rights reserved.

Simulation of Mean Flow and Turbulence over a 2D Building Array Using High-Resolution CFD and a Distributed Drag Force Approach

DTIC Science & Technology

2016-06-16

procedure. The predictive capabilities of the high-resolution computational fluid dynamics ( CFD ) simulations of urban flow are validated against a very...turbulence over a 2D building array using high-resolution CFD and a distributed drag force approach a Department of Mechanical Engineering, University

Generalization of the normal-exponential model: exploration of a more accurate parametrisation for the signal distribution on Illumina BeadArrays.

PubMed

Plancade, Sandra; Rozenholc, Yves; Lund, Eiliv

2012-12-11

Illumina BeadArray technology includes non specific negative control features that allow a precise estimation of the background noise. As an alternative to the background subtraction proposed in BeadStudio which leads to an important loss of information by generating negative values, a background correction method modeling the observed intensities as the sum of the exponentially distributed signal and normally distributed noise has been developed. Nevertheless, Wang and Ye (2012) display a kernel-based estimator of the signal distribution on Illumina BeadArrays and suggest that a gamma distribution would represent a better modeling of the signal density. Hence, the normal-exponential modeling may not be appropriate for Illumina data and background corrections derived from this model may lead to wrong estimation. We propose a more flexible modeling based on a gamma distributed signal and a normal distributed background noise and develop the associated background correction, implemented in the R-package NormalGamma. Our model proves to be markedly more accurate to model Illumina BeadArrays: on the one hand, it is shown on two types of Illumina BeadChips that this model offers a more correct fit of the observed intensities. On the other hand, the comparison of the operating characteristics of several background correction procedures on spike-in and on normal-gamma simulated data shows high similarities, reinforcing the validation of the normal-gamma modeling. The performance of the background corrections based on the normal-gamma and normal-exponential models are compared on two dilution data sets, through testing procedures which represent various experimental designs. Surprisingly, we observe that the implementation of a more accurate parametrisation in the model-based background correction does not increase the sensitivity. These results may be explained by the operating characteristics of the estimators: the normal-gamma background correction offers an improvement in terms of bias, but at the cost of a loss in precision. This paper addresses the lack of fit of the usual normal-exponential model by proposing a more flexible parametrisation of the signal distribution as well as the associated background correction. This new model proves to be considerably more accurate for Illumina microarrays, but the improvement in terms of modeling does not lead to a higher sensitivity in differential analysis. Nevertheless, this realistic modeling makes way for future investigations, in particular to examine the characteristics of pre-processing strategies.

Identification and validation of biomarkers of IgV(H) mutation status in chronic lymphocytic leukemia using microfluidics quantitative real-time polymerase chain reaction technology.

PubMed

Abruzzo, Lynne V; Barron, Lynn L; Anderson, Keith; Newman, Rachel J; Wierda, William G; O'brien, Susan; Ferrajoli, Alessandra; Luthra, Madan; Talwalkar, Sameer; Luthra, Rajyalakshmi; Jones, Dan; Keating, Michael J; Coombes, Kevin R

2007-09-01

To develop a model incorporating relevant prognostic biomarkers for untreated chronic lymphocytic leukemia patients, we re-analyzed the raw data from four published gene expression profiling studies. We selected 88 candidate biomarkers linked to immunoglobulin heavy-chain variable region gene (IgV(H)) mutation status and produced a reliable and reproducible microfluidics quantitative real-time polymerase chain reaction array. We applied this array to a training set of 29 purified samples from previously untreated patients. In an unsupervised analysis, the samples clustered into two groups. Using a cutoff point of 2% homology to the germline IgV(H) sequence, one group contained all 14 IgV(H)-unmutated samples; the other contained all 15 mutated samples. We confirmed the differential expression of 37 of the candidate biomarkers using two-sample t-tests. Next, we constructed 16 different models to predict IgV(H) mutation status and evaluated their performance on an independent test set of 20 new samples. Nine models correctly classified 11 of 11 IgV(H)-mutated cases and eight of nine IgV(H)-unmutated cases, with some models using three to seven genes. Thus, we can classify cases with 95% accuracy based on the expression of as few as three genes.

Pairwise graphical models for structural health monitoring with dense sensor arrays

NASA Astrophysics Data System (ADS)

Mohammadi Ghazi, Reza; Chen, Justin G.; Büyüköztürk, Oral

2017-09-01

Through advances in sensor technology and development of camera-based measurement techniques, it has become affordable to obtain high spatial resolution data from structures. Although measured datasets become more informative by increasing the number of sensors, the spatial dependencies between sensor data are increased at the same time. Therefore, appropriate data analysis techniques are needed to handle the inference problem in presence of these dependencies. In this paper, we propose a novel approach that uses graphical models (GM) for considering the spatial dependencies between sensor measurements in dense sensor networks or arrays to improve damage localization accuracy in structural health monitoring (SHM) application. Because there are always unobserved damaged states in this application, the available information is insufficient for learning the GMs. To overcome this challenge, we propose an approximated model that uses the mutual information between sensor measurements to learn the GMs. The study is backed by experimental validation of the method on two test structures. The first is a three-story two-bay steel model structure that is instrumented by MEMS accelerometers. The second experimental setup consists of a plate structure and a video camera to measure the displacement field of the plate. Our results show that considering the spatial dependencies by the proposed algorithm can significantly improve damage localization accuracy.

Serum protein profiling using an aptamer array predicts clinical outcomes of stage IIA colon cancer: A leave-one-out crossvalidation

PubMed Central

Huh, Jung Wook; Kim, Sung Chun; Sohn, Insuk; Jung, Sin-Ho; Kim, Hee Cheol

2016-01-01

Background In this study, we established and validated a model for predicting prognosis of stage IIA colon cancer patients based on expression profiles of aptamers in serum. Methods Bloods samples were collected from 227 consecutive patients with pathologic T3N0M0 (stage IIA) colon cancer. We incubated 1,149 serum molecule-binding aptamer pools of clinical significance with serum from patients to obtain aptamers bound to serum molecules, which were then amplified and marked. Oligonucleotide arrays were constructed with the base sequences of the 1,149 aptamers, and the marked products identified above were reacted with one another to produce profiles of the aptamers bound to serum molecules. These profiles were organized into low- and high-risk groups of colon cancer patients based on clinical information for the serum samples. Cox proportional hazards model and leave-one-out cross-validation (LOOCV) were used to evaluate predictive performance. Results During a median follow-up period of 5 years, 29 of the 227 patients (11.9%) experienced recurrence. There were 212 patients (93.4%) in the low-risk group and 15 patients (6.6%) in the high-risk group in our aptamer prognosis model. Postoperative recurrence significantly correlated with age and aptamer risk stratification (p = 0.046 and p = 0.001, respectively). In multivariate analysis, aptamer risk stratification (p < 0.001) was an independent predictor of recurrence. Disease-free survival curves calculated according to aptamer risk level predicted through a LOOCV procedure and age showed significant differences (p < 0.001 from permutations). Conclusion Aptamer risk stratification can be a valuable prognostic factor in stage II colon cancer patients. PMID:26908450

Thermal System Verification and Model Validation for NASA's Cryogenic Passively Cooled James Webb Space Telescope

NASA Technical Reports Server (NTRS)

Cleveland, Paul E.; Parrish, Keith A.

2005-01-01

A thorough and unique thermal verification and model validation plan has been developed for NASA s James Webb Space Telescope. The JWST observatory consists of a large deployed aperture optical telescope passively cooled to below 50 Kelvin along with a suite of several instruments passively and actively cooled to below 37 Kelvin and 7 Kelvin, respectively. Passive cooling to these extremely low temperatures is made feasible by the use of a large deployed high efficiency sunshield and an orbit location at the L2 Lagrange point. Another enabling feature is the scale or size of the observatory that allows for large radiator sizes that are compatible with the expected power dissipation of the instruments and large format Mercury Cadmium Telluride (HgCdTe) detector arrays. This passive cooling concept is simple, reliable, and mission enabling when compared to the alternatives of mechanical coolers and stored cryogens. However, these same large scale observatory features, which make passive cooling viable, also prevent the typical flight configuration fully-deployed thermal balance test that is the keystone to most space missions thermal verification plan. JWST is simply too large in its deployed configuration to be properly thermal balance tested in the facilities that currently exist. This reality, when combined with a mission thermal concept with little to no flight heritage, has necessitated the need for a unique and alternative approach to thermal system verification and model validation. This paper describes the thermal verification and model validation plan that has been developed for JWST. The plan relies on judicious use of cryogenic and thermal design margin, a completely independent thermal modeling cross check utilizing different analysis teams and software packages, and finally, a comprehensive set of thermal tests that occur at different levels of JWST assembly. After a brief description of the JWST mission and thermal architecture, a detailed description of the three aspects of the thermal verification and model validation plan is presented.

An Airborne Radar Model For Non-Uniformly Spaced Antenna Arrays

DTIC Science & Technology

2006-03-01

Department of Defense, or the United States Government . AFIT-GE-ENG-06-58 An Airborne Radar Model For Non-Uniformly Spaced Antenna Arrays THESIS Presented...different circular arrays, one containing 24 elements and one containing 15 elements. The circular array per- formance is compared to that of a 6 × 6...model and compared to the radar model of [5, 6, 13]. The two models are mathematically equivalent when the uniformly spaced array is linear. The two

Note: Design of FPGA based system identification module with application to atomic force microscopy

NASA Astrophysics Data System (ADS)

Ghosal, Sayan; Pradhan, Sourav; Salapaka, Murti

2018-05-01

The science of system identification is widely utilized in modeling input-output relationships of diverse systems. In this article, we report field programmable gate array (FPGA) based implementation of a real-time system identification algorithm which employs forgetting factors and bias compensation techniques. The FPGA module is employed to estimate the mechanical properties of surfaces of materials at the nano-scale with an atomic force microscope (AFM). The FPGA module is user friendly which can be interfaced with commercially available AFMs. Extensive simulation and experimental results validate the design.

Optimization and Validation of a Surface Wipe Method to Determine Cyanide and Cyanate: Application to the Emergency Destruction System

DTIC Science & Technology

2012-08-01

NJ b WC-7 Grade 42, 55 mm filter paper Whatman, Piscataway, NJ b WC-8 Cellulose nitrate membrane filter, 47 mm Whatman, Piscataway, NJ b WC-9...density polypropylene plastic bottle. 2.5 Standards Sodium cyanide (NaCN, ≥97.0%, CAS no. 143-33-9) and potassium cyanate (KOCN, ≥97.0...Agilent Technologies model 3D CE system, with an ultraviolet (deuterium lamp) diode array detector, was used to determine the quantities of CN and OCN

Development and Validation of a High-Density SNP Genotyping Array for African Oil Palm.

PubMed

Kwong, Qi Bin; Teh, Chee Keng; Ong, Ai Ling; Heng, Huey Ying; Lee, Heng Leng; Mohamed, Mohaimi; Low, Joel Zi-Bin; Apparow, Sukganah; Chew, Fook Tim; Mayes, Sean; Kulaveerasingam, Harikrishna; Tammi, Martti; Appleton, David Ross

2016-08-01

High-density single nucleotide polymorphism (SNP) genotyping arrays are powerful tools that can measure the level of genetic polymorphism within a population. To develop a whole-genome SNP array for oil palms, SNP discovery was performed using deep resequencing of eight libraries derived from 132 Elaeis guineensis and Elaeis oleifera palms belonging to 59 origins, resulting in the discovery of >3 million putative SNPs. After SNP filtering, the Illumina OP200K custom array was built with 170 860 successful probes. Phenetic clustering analysis revealed that the array could distinguish between palms of different origins in a way consistent with pedigree records. Genome-wide linkage disequilibrium declined more slowly for the commercial populations (ranging from 120 kb at r(2) = 0.43 to 146 kb at r(2) = 0.50) when compared with the semi-wild populations (19.5 kb at r(2) = 0.22). Genetic fixation mapping comparing the semi-wild and commercial population identified 321 selective sweeps. A genome-wide association study (GWAS) detected a significant peak on chromosome 2 associated with the polygenic component of the shell thickness trait (based on the trait shell-to-fruit; S/F %) in tenera palms. Testing of a genomic selection model on the same trait resulted in good prediction accuracy (r = 0.65) with 42% of the S/F % variation explained. The first high-density SNP genotyping array for oil palm has been developed and shown to be robust for use in genetic studies and with potential for developing early trait prediction to shorten the oil palm breeding cycle. Copyright © 2016 The Author. Published by Elsevier Inc. All rights reserved.

Standard, Random, and Optimum Array conversions from Two-Pole resistance data

DOE PAGES

Rucker, D. F.; Glaser, Danney R.

2014-09-01

We present an array evaluation of standard and nonstandard arrays over a hydrogeological target. We develop the arrays by linearly combining data from the pole-pole (or 2-pole) array. The first test shows that reconstructed resistances for the standard Schlumberger and dipoledipole arrays are equivalent or superior to the measured arrays in terms of noise, especially at large geometric factors. The inverse models for the standard arrays also confirm what others have presented in terms of target resolvability, namely the dipole-dipole array has the highest resolution. In the second test, we reconstruct random electrode combinations from the 2-pole data segregated intomore » inner, outer, and overlapping dipoles. The resistance data and inverse models from these randomized arrays show those with inner dipoles to be superior in terms of noise and resolution and that overlapping dipoles can cause model instability and low resolution. Finally, we use the 2-pole data to create an optimized array that maximizes the model resolution matrix for a given electrode geometry. The optimized array produces the highest resolution and target detail. Thus, the tests demonstrate that high quality data and high model resolution can be achieved by acquiring field data from the pole-pole array.« less

An update on SCARLET hardware development and flight programs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jones, P.A.; Murphy, D.M.; Piszczor, M.F.

1995-10-01

Solar Concentrator Array with Refractive Linear Element Technology (SCARLET) is one of the first practical photovoltaic concentrator array technologies that offers a number of benefits for space applications (i.e. high array efficiency, protection from space radiation effects, a relatively light weight system, minimized plasma interactions, etc.) The line-focus concentrator concept, however, also offers two very important advantages: (1) low-cost mass production potential of the lens material; and (2) relaxation of precise array tracking requirements to only a single axis. These benefits offer unique capabilities to both commercial and government spacecraft users, specifically those interested in high radiation missions, such asmore » MEO orbits, and electric-powered propulsion LEO-to-GEO orbit raising applications. SCARLET is an aggressive hardware development and flight validation program sponsored by the Ballistic Missile Defense Organization (BMDO) and NASA Lewis Research Center. Its intent is to bring technology to the level of performance and validation necessary for use by various government and commercial programs. The first phase of the SCARLET program culminated with the design, development and fabrication of a small concentrator array for flight on the METEOR satellite. This hardware will be the first in-space demonstration of concentrator technology at the `array level` and will provide valuable in-orbit performance measurements. The METEOR satellite is currently planned for a September/October 1995 launch. The next phase of the program is the development of large array for use by one of the NASA New Millenium Program missions. This hardware will incorporate a number of the significant improvements over the basic METEOR design. This presentation will address the basic SCARLET technology, examine its benefits to users, and describe the expected improvements for future missions.« less

Ku-Band Traveling Wave Slot Array Using Simple Scanning Control

NASA Technical Reports Server (NTRS)

Host, Nicholas K.; Chen, Chi-Chih; Volakis, John L.; Miranda, Felix A.

2015-01-01

This poster introduces a feeding concept aimed at simplifying the backend (phase shifters) of traditional phased arrays. As an alternative to traditional phased arrays, we employ a traveling wave array (TWA) using a single feedline whose propagation constant is controlled via a single, small mechanical movement without a need for phase shifters to enable scanning. Specifically, a dielectric plunger is positioned within a parallel plate waveguide (PPW) transmission line (TL) that feeds the TWA. By adjusting the position of the dielectric plunger within the PPW feeding the TWA, beam steering is achieved. A 20-element array is designed at 13 gigaherz shown to give stable realized gain across the angular range of minus 25 degrees less than or equal to theta and less than or equal to 25 degrees. A proof of concept array is fabricated and measured to demonstrate and validate the concept's operation.

Ku-Band Traveling Wave Slot Array Using Simple Scanning Control

NASA Technical Reports Server (NTRS)

Host, Nicholas K.; Chen, Chi-Chih; Volakis, John L.; Miranda, Felix A.

2015-01-01

This paper introduces a feeding concept aimed at simplifying the backend (phase shifters) of traditional phased arrays. As an alternative to traditional phased arrays, we employ a traveling wave array (TWA) using a single feedline whose propagation constant is controlled via a single, small mechanical movement without a need for phase shifters to enable scanning. Specifically, a dielectric plunger is positioned within a parallel plate waveguide (PPW) transmission line (TL) that feeds the TWA. By adjusting the position of the dielectric plunger within the PPW feeding the TWA, beam steering is achieved. A 20 element array is designed at 13GHz shown to give stable realized gain across the angular range of -25 deg. less than or equal to theta less than or equal to 25 deg. A proof of concept array is fabricated and measured to demonstrate and validate the concept's operation.

Wideband Array for C, X, and Ku-Band Applications with 5.3:1 Bandwidth

NASA Technical Reports Server (NTRS)

Novak, Markus H.; Volakis, John L.; Miranda, Felix A.

2015-01-01

Planar arrays that exploit strong intentional coupling between elements have allowed for very wide bandwidths in low-profile configurations. However, such designs also require complex impedance matching networks that must also be very compact. For many space applications, typically occurring at C-, X-, Ku-, and most recently at Ka-band, such designs require specialized and expensive fabrication techniques. To address this issue, a novel ultra-wideband array is presented, using a simplified feed network to reduce fabrication cost. The array operates from 3.5-18.5 GHz with VSWR less than 2.4 at broadside, and is of very low profile, having a total height of lambda/10 at the lowest frequency of operation. Validation is provided using a 64-element prototype array, fabricated using common Printed Circuit Board (PCB) technology. The low size, weight, and cost of this array make it attractive for space-borne applications.

Targeted Deposition of Antibodies on a Multiplex CMOS Microarray and Optimization of a Sensitive Immunoassay Using Electrochemical Detection

DTIC Science & Technology

2010-03-19

multiplex array. The array had capture Abs against ricin, Bacillus globigii spores, M13 phage , a1 acid glycoprotein, and fluorescein. Initially, antigen (Ag...comply with a collection of information if it does not display a currently valid OMB control number. 1. REPORT DATE JAN 2010 2. REPORT TYPE 3

Application of fuzzy logic in multicomponent analysis by optodes.

PubMed

Wollenweber, M; Polster, J; Becker, T; Schmidt, H L

1997-01-01

Fuzzy logic can be a useful tool for the determination of substrate concentrations applying optode arrays in combination with flow injection analysis, UV-VIS spectroscopy and kinetics. The transient diffuse reflectance spectra in the visible wavelength region from four optodes were evaluated to carry out the simultaneous determination of artificial mixtures of ampicillin and penicillin. The discrimination of the samples was achieved by changing the composition of the receptor gel and working pH. Different algorithms of pre-processing were applied on the data to reduce the spectral information to a few analytic-specific variables. These variables were used to develop the fuzzy model. After calibration the model was validated by an independent test data set.

C-MOS bulk metal design handbook. [LSI standard cell (circuits)

NASA Technical Reports Server (NTRS)

Edge, T. M.

1977-01-01

The LSI standard cell array technique was used in the fabrication of more than 20 CMOS custom arrays. This technique consists of a series of computer programs and design automation techniques referred to as the Computer Aided Design And Test (CADAT) system that automatically translate a partitioned logic diagram into a set of instructions for driving an automatic plotter which generates precision mask artwork for complex LSI arrays of CMOS standard cells. The standard cell concept for producing LSI arrays begins with the design, layout, and validation of a group of custom circuits called standard cells. Once validated, these cells are given identification or pattern numbers and are permanently stored. To use one of these cells in a logic design, the user calls for the desired cell by pattern number. The Place, Route in Two Dimension (PR2D) computer program is then used to automatically generate the metalization and/or tunnels to interconnect the standard cells into the required function. Data sheets that describe the function, artwork, and performance of each of the standard cells, the general procedure for implementation of logic in CMOS standard cells, and additional detailed design information are presented.

Exploring the Validity of a Unified Learning Program for Remedial and Handicapped Students.

ERIC Educational Resources Information Center

Jenkins, Joseph R.; And Others

The instructional and political validity of current educational policy regarding categorical programs for low-achieving elementary school students are examined. The categorical organization of services for these students, characterized by a vast array of eligibility requirements, rules and regulations, and accounting systems, has resulted in a…

Computational and Mathematical Modeling of Coupled Superconducting Quantum Interference Devices

NASA Astrophysics Data System (ADS)

Berggren, Susan Anne Elizabeth

This research focuses on conducting an extensive computational investigation and mathematical analysis into the average voltage response of arrays of Superconducting Quantum Interference Devices (SQUIDs). These arrays will serve as the basis for the development of a sensitive, low noise, significantly lower Size, Weight and Power (SWaP) antenna integrated with Low-Noise Amplifier (LNA) using the SQUID technology. The goal for this antenna is to be capable of meeting all requirements for Guided Missile Destroyers (DDG) 1000 class ships for Information Operations/Signals Intelligence (IO/SIGINT) applications in Very High Frequency/Ultra High Frequency (V/UHF) bands. The device will increase the listening capability of receivers by moving technology into a new regime of energy detection allowing wider band, smaller size, more sensitive, stealthier systems. The smaller size and greater sensitivity will allow for ships to be “de-cluttered” of their current large dishes and devices, replacing everything with fewer and smaller SQUID antenna devices. The fewer devices present on the deck of a ship, the more invisible the ship will be to enemy forces. We invent new arrays of SQUIDs, optimized for signal detection with very high dynamic range and excellent spur-free dynamic range, while maintaining extreme small size (and low radar cross section), wide bandwidth, and environmentally noise limited sensitivity, effectively shifting the bottle neck of receiver systems forever away from the antenna itself deeper into the receiver chain. To accomplish these goals we develop and validate mathematical models for different designs of SQUID arrays and use them to invent a new device and systems design. This design is capable of significantly exceeding, per size weight and power, state-of-the-art receiver system measures of performance, such as bandwidth, sensitivity, dynamic range, and spurious-free dynamic range.

Active room compensation for sound reinforcement using sound field separation techniques.

PubMed

Heuchel, Franz M; Fernandez-Grande, Efren; Agerkvist, Finn T; Shabalina, Elena

2018-03-01

This work investigates how the sound field created by a sound reinforcement system can be controlled at low frequencies. An indoor control method is proposed which actively absorbs the sound incident on a reflecting boundary using an array of secondary sources. The sound field is separated into incident and reflected components by a microphone array close to the secondary sources, enabling the minimization of reflected components by means of optimal signals for the secondary sources. The method is purely feed-forward and assumes constant room conditions. Three different sound field separation techniques for the modeling of the reflections are investigated based on plane wave decomposition, equivalent sources, and the Spatial Fourier transform. Simulations and an experimental validation are presented, showing that the control method performs similarly well at enhancing low frequency responses with the three sound separation techniques. Resonances in the entire room are reduced, although the microphone array and secondary sources are confined to a small region close to the reflecting wall. Unlike previous control methods based on the creation of a plane wave sound field, the investigated method works in arbitrary room geometries and primary source positions.

Air-cathode microbial fuel cell array: a device for identifying and characterizing electrochemically active microbes.

PubMed

Hou, Huijie; Li, Lei; de Figueiredo, Paul; Han, Arum

2011-01-15

Microbial fuel cells (MFCs) have generated excitement in environmental and bioenergy communities due to their potential for coupling wastewater treatment with energy generation and powering diverse devices. The pursuit of strategies such as improving microbial cultivation practices and optimizing MFC devices has increased power generating capacities of MFCs. However, surprisingly few microbial species with electrochemical activity in MFCs have been identified because current devices do not support parallel analyses or high throughput screening. We have recently demonstrated the feasibility of using advanced microfabrication methods to fabricate an MFC microarray. Here, we extend these studies by demonstrating a microfabricated air-cathode MFC array system. The system contains 24 individual air-cathode MFCs integrated onto a single chip. The device enables the direct and parallel comparison of different microbes loaded onto the array. Environmental samples were used to validate the utility of the air-cathode MFC array system and two previously identified isolates, 7Ca (Shewanella sp.) and 3C (Arthrobacter sp.), were shown to display enhanced electrochemical activities of 2.69 mW/m(2) and 1.86 mW/m(2), respectively. Experiments using a large scale conventional air-cathode MFC validated these findings. The parallel air-cathode MFC array system demonstrated here is expected to promote and accelerate the discovery and characterization of electrochemically active microbes. Copyright © 2010 Elsevier B.V. All rights reserved.

Performance degradation mechanisms and modes in terrestrial photovoltaic arrays and technology for their diagnosis

NASA Technical Reports Server (NTRS)

Noel, G. T.; Sliemers, F. A.; Derringer, G. C.; Wood, V. E.; Wilkes, K. E.; Gaines, G. B.; Carmichael, D. C.

1978-01-01

Accelerated life-prediction test methodologies have been developed for the validation of a 20-year service life for low-cost photovoltaic arrays. Array failure modes, relevant materials property changes, and primary degradation mechanisms are discussed as a prerequisite to identifying suitable measurement techniques and instruments. Measurements must provide sufficient confidence to permit selection among alternative designs and materials and to stimulate widespread deployment of such arrays. Furthermore, the diversity of candidate materials and designs, and the variety of potential environmental stress combinations, degradation mechanisms and failure modes require that combinations of measurement techniques be identified which are suitable for the characterization of various encapsulation system-cell structure-environment combinations.

Tissue matrix arrays for high throughput screening and systems analysis of cell function

PubMed Central

Beachley, Vince Z.; Wolf, Matthew T.; Sadtler, Kaitlyn; Manda, Srikanth S.; Jacobs, Heather; Blatchley, Michael; Bader, Joel S.; Pandey, Akhilesh; Pardoll, Drew; Elisseeff, Jennifer H.

2015-01-01

Cell and protein arrays have demonstrated remarkable utility in the high-throughput evaluation of biological responses; however, they lack the complexity of native tissue and organs. Here, we describe tissue extracellular matrix (ECM) arrays for screening biological outputs and systems analysis. We spotted processed tissue ECM particles as two-dimensional arrays or incorporated them with cells to generate three-dimensional cell-matrix microtissue arrays. We then investigated the response of human stem, cancer, and immune cells to tissue ECM arrays originating from 11 different tissues, and validated the 2D and 3D arrays as representative of the in vivo microenvironment through quantitative analysis of tissue-specific cellular responses, including matrix production, adhesion and proliferation, and morphological changes following culture. The biological outputs correlated with tissue proteomics, and network analysis identified several proteins linked to cell function. Our methodology enables broad screening of ECMs to connect tissue-specific composition with biological activity, providing a new resource for biomaterials research and translation. PMID:26480475

Computationally expanding infinium HumanMethylation450 BeadChip array data to reveal distinct DNA methylation patterns of rheumatoid arthritis

PubMed Central

Li, Chengzhe; Ai, Rizi; Wang, Mengchi; Firestein, Gary S.; Wang, Wei

2016-01-01

Motivation: DNA methylation signatures in rheumatoid arthritis (RA) have been identified in fibroblast-like synoviocytes (FLS) with Illumina HumanMethylation450 array. Since <2% of CpG sites are covered by the Illumina 450K array and whole genome bisulfite sequencing is still too expensive for many samples, computationally predicting DNA methylation levels based on 450K data would be valuable to discover more RA-related genes. Results: We developed a computational model that is trained on 14 tissues with both whole genome bisulfite sequencing and 450K array data. This model integrates information derived from the similarity of local methylation pattern between tissues, the methylation information of flanking CpG sites and the methylation tendency of flanking DNA sequences. The predicted and measured methylation values were highly correlated with a Pearson correlation coefficient of 0.9 in leave-one-tissue-out cross-validations. Importantly, the majority (76%) of the top 10% differentially methylated loci among the 14 tissues was correctly detected using the predicted methylation values. Applying this model to 450K data of RA, osteoarthritis and normal FLS, we successfully expanded the coverage of CpG sites 18.5-fold and accounts for about 30% of all the CpGs in the human genome. By integrative omics study, we identified genes and pathways tightly related to RA pathogenesis, among which 12 genes were supported by triple evidences, including 6 genes already known to perform specific roles in RA and 6 genes as new potential therapeutic targets. Availability and implementation: The source code, required data for prediction, and demo data for test are freely available at: http://wanglab.ucsd.edu/star/LR450K/. Contact: wei-wang@ucsd.edu or gfirestein@ucsd.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:26883487

TU-H-BRC-09: Validation of a Novel Therapeutic X-Ray Array Source and Collimation System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trovati, S; King, GJ; Loo, BW

2016-06-15

Purpose: We have experimentally characterized and simulated the dosimetric properties and spatial fidelity of a novel X-ray array source and collimation system called SPHINX that has the potential to generate complex intensity modulated X-ray beams by varying the electron beam intensity only, and without any moving parts like in multi-leaf collimators. Methods: We investigated the spatial fidelity and the X-ray performances of a SPHINX prototype in tungsten, using a Cyber Knife and the experimental high-energy electron beam line at XTA at SLAC National Laboratory. Dose distributions were recorded with gafchromic films, placed at the distal end of SPHINX and atmore » several depths in a solid water phantom. The geometry of SPHINX and of the experimental set-ups was also modeled in Monte Carlo (MC) simulations with the FLUKA code, used to reproduce the experimental results and, after validation, to predict and optimize the performance and design of the SPHINX. Results: The results indicate significant particle leakage through the channels during a single-channel irradiation for high incident energies, followed by a rapid decrease for energies of clinical interest. When the collimator channels are used as target, the photon production increases, however at expense of the beam size that is also enlarged. The illumination of all channels simultaneously shows a fairly even transmission of the beam. Conclusion: With the measurements we have verified the MC models and the uniformity of beam transmission through SPHINX, and we have evaluated the importance of particle leakage through adjacent channels. These results can be used to optimize SPHINX design through the validated MC simulations. Funding: Weston Havens Foundation, Office of the Dean of Medical School and Office of the Provost (Stanford University). Loo, Maxim, Borchard, Tantawi are co-founders of TibaRay Inc. Loo and Tantawi are TibaRay Inc. board members. Loo and Maxim received grants from Varian Medical Systems and RaySearch Laboratory.« less

Laboratory Simulations of CME-Solar Wind Interactions Using a Coaxial Gun and Background Plasma

NASA Astrophysics Data System (ADS)

Wallace, B. H.; Zhang, Y.; Fisher, D.; Gilmore, M.

2016-12-01

Understanding and predicting solar coronal mass ejections (CMEs) is of critical importance for mitigating their disruptive behavior on ground- and space-based technologies. While predictive models of CME propagation and evolution have relied primarily on sparse in-situ data along with ground and satellite images for validation purposes, emerging laboratory efforts have shown that CME-like events can be created with parameters applicable to the solar regime that may likewise aid in predictive modeling. A modified version of the coaxial plasma gun from the Plasma Bubble Expansion Experiment (PBEX) [A. G. Lynn, Y. Zhang, S. C. Hsu, H. Li, W. Liu, M. Gilmore, and C. Watts, Bull. Amer. Phys. Soc. 52, 53 (2007)] will be used in conjunction with the Helicon-Cathode (HelCat) basic plasma science device in order to observe the magnetic characteristics of CMEs as they propagate through the solar wind. The evolution of these interactions will be analyzed using a multi-tip Langmuir probe array, a 33-position B-dot probe array, and a high speed camera. The results of this investigation will be used alongside the University of Michigan's BATS-R-US 3-D MHD numerical code, which will be used to perform simulations of the coaxial plasma gun experiment. The results of these two approaches will be compared in order to validate the capabilities of the BATS-R-US code as well as to further our understanding of magnetic reconnection and other processes that take place as CMEs propagate through the solar wind. The details of the experimental setup as well as the analytical approach are discussed.

A model for the distributed storage and processing of large arrays

NASA Technical Reports Server (NTRS)

Mehrota, P.; Pratt, T. W.

1983-01-01

A conceptual model for parallel computations on large arrays is developed. The model provides a set of language concepts appropriate for processing arrays which are generally too large to fit in the primary memories of a multiprocessor system. The semantic model is used to represent arrays on a concurrent architecture in such a way that the performance realities inherent in the distributed storage and processing can be adequately represented. An implementation of the large array concept as an Ada package is also described.

Identification of anti-inflammatory fractions of Geranium wilfordii using tumor necrosis factor-alpha as a drug target on Herbochip® - an array-based high throughput screening platform.

PubMed

Huang, Min; Yao, Pei-Wun; Chang, Margaret Dah-Tysr; Ng, Sim-Kun; Yu, Chien-Hui; Zhang, Yun-Feng; Wen, Meng-Liang; Yang, Xiao-Yuan; Lai, Yiu-Kay

2015-05-12

Geranium wilfordii is one of the major species used as Herba Geranii (lao-guan-cao) in China, it is commonly used solely or in polyherbal formulations for treatment of joint pain resulted from rheumatoid arthritis (RA) and gout. This herb is used to validate a target-based drug screening platform called Herbochip® and evaluate anti-inflammatory effects of Geranium wilfordii ethanolic extract (GWE) using tumor necrosis factor-alpha (TNF-α) as a drug target together with subsequent in vitro and in vivo assays. A microarray-based drug screening platform was constructed by arraying HPLC fractions of herbal extracts onto a surface-activated polystyrene slide (Herbochip®). Using TNF-α as a molecular probe, fractions of 82 selected herbal extracts, including GWE, were then screened to identify plant extracts containing TNF-α-binding agents. Cytotoxicity of GWE and modulatory effects of GWE on TNF-α expression were evaluated by cell-based assays using TNF-α sensitive murine fibrosarcoma L929 cells as an in vitro model. The in vivo anti-inflammatory effects of GWE were further assessed by animal models including carrageenan-induced hind paw edema in rats and xylene-induced ear edema in mice, in comparison with aspirin. The hybridization data obtained by Herbochip® analysis showed unambiguous signals which confirmed TNF-α binding activity in 46 herbal extracts including GWE. In L929 cells GWE showed significant inhibitory effect on TNF-α expression with negligible cytotoxicity. GWE also significantly inhibited formation of carrageenan-induced hind paw edema and xylene-induced ear edema in animal models, indicating that it indeed possessed anti-inflammatory activity. We have thus validated effectiveness of the Herbochip® drug screening platform using TNF-α as a molecular target. Subsequent experiments on GWE lead us to conclude that the anti-RA activity of GWE can be attributed to inhibitory effect of GWE on the key inflammatory factor, TNF-α. Our results contribute towards validation of the traditional use of GWE in the treatment of RA and other inflammatory joint disorders.

Realization of an Ultra-thin Metasurface to Facilitate Wide Bandwidth, Wide Angle Beam Scanning.

PubMed

Bah, Alpha O; Qin, Pei-Yuan; Ziolkowski, Richard W; Cheng, Qiang; Guo, Y Jay

2018-03-19

A wide bandwidth, ultra-thin, metasurface is reported that facilitates wide angle beam scanning. Each unit cell of the metasurface contains a multi-resonant, strongly-coupled unequal arm Jerusalem cross element. This element consists of two bent-arm, orthogonal, capacitively loaded strips. The wide bandwidth of the metasurface is achieved by taking advantage of the strong coupling within and between its multi-resonant elements. A prototype of the proposed metasurface has been fabricated and measured. The design concept has been validated by the measured results. The proposed metasurface is able to alleviate the well-known problem of impedance mismatch caused by mutual coupling when the main beam of an array is scanned. In order to validate the wideband and wide scanning ability of the proposed metasurface, it is integrated with a wideband antenna array as a wide angle impedance matching element. The metasurface-array combination facilitates wide angle scanning over a 6:1 impedance bandwidth without the need for bulky dielectrics or multi-layered structures.

Experimental validation of spatial Fourier transform-based multiple sound zone generation with a linear loudspeaker array.

PubMed

Okamoto, Takuma; Sakaguchi, Atsushi

2017-03-01

Generating acoustically bright and dark zones using loudspeakers is gaining attention as one of the most important acoustic communication techniques for such uses as personal sound systems and multilingual guide services. Although most conventional methods are based on numerical solutions, an analytical approach based on the spatial Fourier transform with a linear loudspeaker array has been proposed, and its effectiveness has been compared with conventional acoustic energy difference maximization and presented by computer simulations. To describe the effectiveness of the proposal in actual environments, this paper investigates the experimental validation of the proposed approach with rectangular and Hann windows and compared it with three conventional methods: simple delay-and-sum beamforming, contrast maximization, and least squares-based pressure matching using an actually implemented linear array of 64 loudspeakers in an anechoic chamber. The results of both the computer simulations and the actual experiments show that the proposed approach with a Hann window more accurately controlled the bright and dark zones than the conventional methods.

Development of a computer-assisted forensic radiographic identification method using the lateral cervical and lumbar spine.

PubMed

Derrick, Sharon M; Raxter, Michelle H; Hipp, John A; Goel, Priya; Chan, Elaine F; Love, Jennifer C; Wiersema, Jason M; Akella, N Shastry

2015-01-01

Medical examiners and coroners (ME/C) in the United States hold statutory responsibility to identify deceased individuals who fall under their jurisdiction. The computer-assisted decedent identification (CADI) project was designed to modify software used in diagnosis and treatment of spinal injuries into a mathematically validated tool for ME/C identification of fleshed decedents. CADI software analyzes the shapes of targeted vertebral bodies imaged in an array of standard radiographs and quantifies the likelihood that any two of the radiographs contain matching vertebral bodies. Six validation tests measured the repeatability, reliability, and sensitivity of the method, and the effects of age, sex, and number of radiographs in array composition. CADI returned a 92-100% success rate in identifying the true matching pair of vertebrae within arrays of five to 30 radiographs. Further development of CADI is expected to produce a novel identification method for use in ME/C offices that is reliable, timely, and cost-effective. © 2014 American Academy of Forensic Sciences.

DNS of Flows over Periodic Hills using a Discontinuous-Galerkin Spectral-Element Method

NASA Technical Reports Server (NTRS)

Diosady, Laslo T.; Murman, Scott M.

2014-01-01

Direct numerical simulation (DNS) of turbulent compressible flows is performed using a higher-order space-time discontinuous-Galerkin finite-element method. The numerical scheme is validated by performing DNS of the evolution of the Taylor-Green vortex and turbulent flow in a channel. The higher-order method is shown to provide increased accuracy relative to low-order methods at a given number of degrees of freedom. The turbulent flow over a periodic array of hills in a channel is simulated at Reynolds number 10,595 using an 8th-order scheme in space and a 4th-order scheme in time. These results are validated against previous large eddy simulation (LES) results. A preliminary analysis provides insight into how these detailed simulations can be used to improve Reynoldsaveraged Navier-Stokes (RANS) modeling

Telescoping Solar Array Concept for Achieving High Packaging Efficiency

NASA Technical Reports Server (NTRS)

Mikulas, Martin; Pappa, Richard; Warren, Jay; Rose, Geoff

2015-01-01

Lightweight, high-efficiency solar arrays are required for future deep space missions using high-power Solar Electric Propulsion (SEP). Structural performance metrics for state-of-the art 30-50 kW flexible blanket arrays recently demonstrated in ground tests are approximately 40 kW/cu m packaging efficiency, 150 W/kg specific power, 0.1 Hz deployed stiffness, and 0.2 g deployed strength. Much larger arrays with up to a megawatt or more of power and improved packaging and specific power are of interest to mission planners for minimizing launch and life cycle costs of Mars exploration. A new concept referred to as the Compact Telescoping Array (CTA) with 60 kW/cu m packaging efficiency at 1 MW of power is described herein. Performance metrics as a function of array size and corresponding power level are derived analytically and validated by finite element analysis. Feasible CTA packaging and deployment approaches are also described. The CTA was developed, in part, to serve as a NASA reference solar array concept against which other proposed designs of 50-1000 kW arrays for future high-power SEP missions could be compared.

Analytical model for local scour prediction around hydrokinetic turbine foundations

NASA Astrophysics Data System (ADS)

Musa, M.; Heisel, M.; Hill, C.; Guala, M.

2017-12-01

Marine and Hydrokinetic renewable energy is an emerging sustainable and secure technology which produces clean energy harnessing water currents from mostly tidal and fluvial waterways. Hydrokinetic turbines are typically anchored at the bottom of the channel, which can be erodible or non-erodible. Recent experiments demonstrated the interactions between operating turbines and an erodible surface with sediment transport, resulting in a remarkable localized erosion-deposition pattern significantly larger than those observed by static in-river construction such as bridge piers, etc. Predicting local scour geometry at the base of hydrokinetic devices is extremely important during foundation design, installation, operation, and maintenance (IO&M), and long-term structural integrity. An analytical modeling framework is proposed applying the phenomenological theory of turbulence to the flow structures that promote the scouring process at the base of a turbine. The evolution of scour is directly linked to device operating conditions through the turbine drag force, which is inferred to locally dictate the energy dissipation rate in the scour region. The predictive model is validated using experimental data obtained at the University of Minnesota's St. Anthony Falls Laboratory (SAFL), covering two sediment mobility regimes (clear water and live bed), different turbine designs, hydraulic parameters, grain size distribution and bedform types. The model is applied to a potential prototype scale deployment in the lower Mississippi River, demonstrating its practical relevance and endorsing the feasibility of hydrokinetic energy power plants in large sandy rivers. Multi-turbine deployments are further studied experimentally by monitoring both local and non-local geomorphic effects introduced by a twelve turbine staggered array model installed in a wide channel at SAFL. Local scour behind each turbine is well captured by the theoretical predictive model. However, multi-turbine configurations introduce subtle large-scale effects that deepen local scour within the first two rows of the array and develop spatially as a two-dimensional oscillation of the mean bed downstream of the entire array.

Non-invasive transcranial ultrasound therapy based on a 3D CT scan: protocol validation and in vitro results

NASA Astrophysics Data System (ADS)

Marquet, F.; Pernot, M.; Aubry, J.-F.; Montaldo, G.; Marsac, L.; Tanter, M.; Fink, M.

2009-05-01

A non-invasive protocol for transcranial brain tissue ablation with ultrasound is studied and validated in vitro. The skull induces strong aberrations both in phase and in amplitude, resulting in a severe degradation of the beam shape. Adaptive corrections of the distortions induced by the skull bone are performed using a previous 3D computational tomography scan acquisition (CT) of the skull bone structure. These CT scan data are used as entry parameters in a FDTD (finite differences time domain) simulation of the full wave propagation equation. A numerical computation is used to deduce the impulse response relating the targeted location and the ultrasound therapeutic array, thus providing a virtual time-reversal mirror. This impulse response is then time-reversed and transmitted experimentally by a therapeutic array positioned exactly in the same referential frame as the one used during CT scan acquisitions. In vitro experiments are conducted on monkey and human skull specimens using an array of 300 transmit elements working at a central frequency of 1 MHz. These experiments show a precise refocusing of the ultrasonic beam at the targeted location with a positioning error lower than 0.7 mm. The complete validation of this transcranial adaptive focusing procedure paves the way to in vivo animal and human transcranial HIFU investigations.

On-chip visual perception of motion: a bio-inspired connectionist model on FPGA.

PubMed

Torres-Huitzil, César; Girau, Bernard; Castellanos-Sánchez, Claudio

2005-01-01

Visual motion provides useful information to understand the dynamics of a scene to allow intelligent systems interact with their environment. Motion computation is usually restricted by real time requirements that need the design and implementation of specific hardware architectures. In this paper, the design of hardware architecture for a bio-inspired neural model for motion estimation is presented. The motion estimation is based on a strongly localized bio-inspired connectionist model with a particular adaptation of spatio-temporal Gabor-like filtering. The architecture is constituted by three main modules that perform spatial, temporal, and excitatory-inhibitory connectionist processing. The biomimetic architecture is modeled, simulated and validated in VHDL. The synthesis results on a Field Programmable Gate Array (FPGA) device show the potential achievement of real-time performance at an affordable silicon area.

Model Based Reconstruction of UT Array Data

NASA Astrophysics Data System (ADS)

Calmon, P.; Iakovleva, E.; Fidahoussen, A.; Ribay, G.; Chatillon, S.

2008-02-01

Beyond the detection of defects, their characterization (identification, positioning, sizing) is one goal of great importance often assigned to the analysis of NDT data. The first step of such analysis in the case of ultrasonic testing amounts to image in the part the detected echoes. This operation is in general achieved by considering time of flights and by applying simplified algorithms which are often valid only on canonical situations. In this communication we present an overview of different imaging techniques studied at CEA LIST and based on the exploitation of direct models which enable to address complex configurations and are available in the CIVA software plat-form. We discuss in particular ray-model based algorithms, algorithms derived from classical synthetic focusing and processing of the full inter-element matrix (MUSIC algorithm).

Joint Analysis of X-Ray and Sunyaev-Zel'Dovich Observations of Galaxy Clusters Using an Analytic Model of the Intracluster Medium

NASA Technical Reports Server (NTRS)

Hasler, Nicole; Bulbul, Esra; Bonamente, Massimiliano; Carlstrom, John E.; Culverhouse, Thomas L.; Gralla, Megan; Greer, Christopher; Lamb, James W.; Hawkins, David; Hennessy, Ryan;

Test of hadronic interaction models with the KASCADE-Grande muon data

NASA Astrophysics Data System (ADS)

Arteaga-Velázquez, J. C.; Apel, W. D.; Bekk, K.; Bertaina, M.; Blümer, J.; Bozdog, H.; Brancus, I. M.; Cantoni, E.; Chiavassa, A.; Cossavella, F.; Daumiller, K.; de Souza, V.; Di Pierro, F.; Doll, P.; Engel, R.; Engler, J.; Finger, M.; Fuchs, B.; Fuhrmann, D.; Gils, H. J.; Glasstetter, R.; Grupen, C.; Haungs, A.; Heck, D.; Hörandel, J. R.; Huber, D.; Huege, T.; Kampert, K.-H.; Kang, D.; Klages, H. O.; Link, K.; Łuczak, P.; Ludwig, M.; Mathes, H. J.; Mayer, H. J.; Melissas, M.; Milke, J.; Mitrica, B.; Morello, C.; Oehlschläger, J.; Ostapchenko, S.; Palmieri, N.; Petcu, M.; Pierog, T.; Rebel, H.; Roth, M.; Schieler, H.; Schoo, S.; Schröder, F. G.; Sima, O.; Toma, G.; Trinchero, G. C.; Ulrich, H.; Weindl, A.; Wochele, J.; Wommer, M.; Zabierowski, J.

2013-06-01

KASCADE-Grande is an air-shower observatory devoted for the detection of cosmic rays with energies in the interval of 1014 - 1018 eV, where the Grande array is responsible for the higher energy range. The experiment comprises different detection systems which allow precise measurements of the charged, electron and muon numbers of extensive air-showers (EAS). These data is employed not only to reconstruct the properties of the primary cosmic-ray particle but also to test hadronic interaction models at high energies. In this contribution, predictions of the muon content of EAS from QGSJET II-2, SIBYLL 2.1 and EPOS 1.99 are confronted with the experimental measurements performed with the KASCADE-Grande experiment in order to test the validity of these hadronic models commonly used in EAS simulations.

SeisCORK Engineering Design Study

DTIC Science & Technology

2006-05-01

Stephen, R. A., et al. (1994a), The seafloor borehole array seismic system (SEABASS) and VLF ambient noise, Marine Geophysical Researches, 16, 243...286. Stephen, R. A., et al. (1994b), The Seafloor Borehole Array Seismic System (SEABASS) and VLF Ambient Noise, Marine Geophysical Researches, 16, 243...Contents Executive Summary 4 Introduction 5 General Science Goals and Justification for Borehole Seismology in the Seafloor 6 Validating Surface Seismic

High resolution ion chamber array delivery quality assurance for robotic radiosurgery: Commissioning and validation.

PubMed

Blanck, Oliver; Masi, Laura; Chan, Mark K H; Adamczyk, Sebastian; Albrecht, Christian; Damme, Marie-Christin; Loutfi-Krauss, Britta; Alraun, Manfred; Fehr, Roman; Ramm, Ulla; Siebert, Frank-Andre; Stelljes, Tenzin Sonam; Poppinga, Daniela; Poppe, Björn

2016-06-01

High precision radiosurgery demands comprehensive delivery-quality-assurance techniques. The use of a liquid-filled ion-chamber-array for robotic-radiosurgery delivery-quality-assurance was investigated and validated using several test scenarios and routine patient plans. Preliminary evaluation consisted of beam profile validation and analysis of source-detector-distance and beam-incidence-angle response dependence. The delivery-quality-assurance analysis is performed in four steps: (1) Array-to-plan registration, (2) Evaluation with standard Gamma-Index criteria (local-dose-difference⩽2%, distance-to-agreement⩽2mm, pass-rate⩾90%), (3) Dose profile alignment and dose distribution shift until maximum pass-rate is found, and (4) Final evaluation with 1mm distance-to-agreement criterion. Test scenarios consisted of intended phantom misalignments, dose miscalibrations, and undelivered Monitor Units. Preliminary method validation was performed on 55 clinical plans in five institutions. The 1000SRS profile measurements showed sufficient agreement compared with a microDiamond detector for all collimator sizes. The relative response changes can be up to 2.2% per 10cm source-detector-distance change, but remains within 1% for the clinically relevant source-detector-distance range. Planned and measured dose under different beam-incidence-angles showed deviations below 1% for angles between 0° and 80°. Small-intended errors were detected by 1mm distance-to-agreement criterion while 2mm criteria failed to reveal some of these deviations. All analyzed delivery-quality-assurance clinical patient plans were within our tight tolerance criteria. We demonstrated that a high-resolution liquid-filled ion-chamber-array can be suitable for robotic radiosurgery delivery-quality-assurance and that small errors can be detected with tight distance-to-agreement criterion. Further improvement may come from beam specific correction for incidence angle and source-detector-distance response. Copyright © 2016 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.

Single laboratory validation of the determination of yohimbine in yohimbe bark and related dietary supplements using UHPLC/UV/MS

USDA-ARS?s Scientific Manuscript database

A single laboratory validation has been performed on a practical ultra high-performance liquid chromatography (UHPLC), diode array detection (DAD), and tandem mass spectrometry (MS) method for determination of yohimbine in yohimbe barks and related dietary supplements. Good separation was achieved u...

Measuring Uncertainty within Organizational Relationships: An Analysis of the CLUES Instrument.

ERIC Educational Resources Information Center

Jorgensen, Jerry D.; Petelle, John L.

1992-01-01

Presents an overview of the CLUES (also known as the CL7) instrument. Discusses the instrument's reliability and validity and its application to organizational communication research. Suggests that the instrument demonstrates unidimensionality in low-context cultures, high reliability, and known validity in a wide array of relational types. (RS)

Predicting the composition of red wine blends using an array of multicomponent Peptide-based sensors.

PubMed

Ghanem, Eman; Hopfer, Helene; Navarro, Andrea; Ritzer, Maxwell S; Mahmood, Lina; Fredell, Morgan; Cubley, Ashley; Bolen, Jessica; Fattah, Rabia; Teasdale, Katherine; Lieu, Linh; Chua, Tedmund; Marini, Federico; Heymann, Hildegarde; Anslyn, Eric V

2015-05-20

Differential sensing using synthetic receptors as mimics of the mammalian senses of taste and smell is a powerful approach for the analysis of complex mixtures. Herein, we report on the effectiveness of a cross-reactive, supramolecular, peptide-based sensing array in differentiating and predicting the composition of red wine blends. Fifteen blends of Cabernet Sauvignon, Merlot and Cabernet Franc, in addition to the mono varietals, were used in this investigation. Linear Discriminant Analysis (LDA) showed a clear differentiation of blends based on tannin concentration and composition where certain mono varietals like Cabernet Sauvignon seemed to contribute less to the overall characteristics of the blend. Partial Least Squares (PLS) Regression and cross validation were used to build a predictive model for the responses of the receptors to eleven binary blends and the three mono varietals. The optimized model was later used to predict the percentage of each mono varietal in an independent test set composted of four tri-blends with a 15% average error. A partial least square regression model using the mouth-feel and taste descriptive sensory attributes of the wine blends revealed a strong correlation of the receptors to perceived astringency, which is indicative of selective binding to polyphenols in wine.

Torsional Buckling Tests of a Simulated Solar Array

NASA Technical Reports Server (NTRS)

Thornton, E. A.

1996-01-01

Spacecraft solar arrays are typically large structures supported by long, thin deployable booms. As such, they may be particularly susceptible to abnormal structural behavior induced by mechanical and thermal loading. One example is the Hubble Space Telescope solar arrays which consist of two split tubes fit one inside the other called BiSTEMs. The original solar arrays on the Hubble Space Telescope were found to be severely twisted following deployment and later telemetry data showed the arrays were vibrating during daylight to night and night to daylight transition. The solar array twist however can force the BiSTEM booms to change in cross-section and cause tile solar arrays to react unpredictably to future loading. The solar arrays were redesigned to correct for tile vibration, however, upon redeployment they again twisted. To assess the influence of boom cross-sectional configuration, experiments were conducted on two types of booms, (1)booms with closed cross-sections, and (2) booms with open cross-sections. Both models were subjected to compressive loading and imposed tip deflections. An existing analytical model by Chung and Thornton was used to define the individual load ranges for each model solar array configuration. The load range for the model solar array using closed cross-section booms was 0-120 Newtons and 0-160 Newtons for the model solar array using open cross-section booms. The results indicate the model solar array with closed cross-section booms buckled only in flexure. However, the results of the experiment with open cross-section booms indicate the model solar array buckled only in torsion and with imposed tip deflections the cross section can degrade by rotation of the inner relative to the outer STEM. For tile Hubble Space Telescope solar arrays the results of these experiments indicate the twisting resulted from the initial mechanical loading of the open cross-section booms.

Functional Inference of Complex Anatomical Tendinous Networks at a Macroscopic Scale via Sparse Experimentation

PubMed Central

Saxena, Anupam; Lipson, Hod; Valero-Cuevas, Francisco J.

2012-01-01

In systems and computational biology, much effort is devoted to functional identification of systems and networks at the molecular-or cellular scale. However, similarly important networks exist at anatomical scales such as the tendon network of human fingers: the complex array of collagen fibers that transmits and distributes muscle forces to finger joints. This network is critical to the versatility of the human hand, and its function has been debated since at least the 16th century. Here, we experimentally infer the structure (both topology and parameter values) of this network through sparse interrogation with force inputs. A population of models representing this structure co-evolves in simulation with a population of informative future force inputs via the predator-prey estimation-exploration algorithm. Model fitness depends on their ability to explain experimental data, while the fitness of future force inputs depends on causing maximal functional discrepancy among current models. We validate our approach by inferring two known synthetic Latex networks, and one anatomical tendon network harvested from a cadaver's middle finger. We find that functionally similar but structurally diverse models can exist within a narrow range of the training set and cross-validation errors. For the Latex networks, models with low training set error [<4%] and resembling the known network have the smallest cross-validation errors [∼5%]. The low training set [<4%] and cross validation [<7.2%] errors for models for the cadaveric specimen demonstrate what, to our knowledge, is the first experimental inference of the functional structure of complex anatomical networks. This work expands current bioinformatics inference approaches by demonstrating that sparse, yet informative interrogation of biological specimens holds significant computational advantages in accurate and efficient inference over random testing, or assuming model topology and only inferring parameters values. These findings also hold clues to both our evolutionary history and the development of versatile machines. PMID:23144601

Functional inference of complex anatomical tendinous networks at a macroscopic scale via sparse experimentation.

PubMed

Saxena, Anupam; Lipson, Hod; Valero-Cuevas, Francisco J

2012-01-01

In systems and computational biology, much effort is devoted to functional identification of systems and networks at the molecular-or cellular scale. However, similarly important networks exist at anatomical scales such as the tendon network of human fingers: the complex array of collagen fibers that transmits and distributes muscle forces to finger joints. This network is critical to the versatility of the human hand, and its function has been debated since at least the 16(th) century. Here, we experimentally infer the structure (both topology and parameter values) of this network through sparse interrogation with force inputs. A population of models representing this structure co-evolves in simulation with a population of informative future force inputs via the predator-prey estimation-exploration algorithm. Model fitness depends on their ability to explain experimental data, while the fitness of future force inputs depends on causing maximal functional discrepancy among current models. We validate our approach by inferring two known synthetic Latex networks, and one anatomical tendon network harvested from a cadaver's middle finger. We find that functionally similar but structurally diverse models can exist within a narrow range of the training set and cross-validation errors. For the Latex networks, models with low training set error [<4%] and resembling the known network have the smallest cross-validation errors [∼5%]. The low training set [<4%] and cross validation [<7.2%] errors for models for the cadaveric specimen demonstrate what, to our knowledge, is the first experimental inference of the functional structure of complex anatomical networks. This work expands current bioinformatics inference approaches by demonstrating that sparse, yet informative interrogation of biological specimens holds significant computational advantages in accurate and efficient inference over random testing, or assuming model topology and only inferring parameters values. These findings also hold clues to both our evolutionary history and the development of versatile machines.

A Model-based Approach to Scaling GPP and NPP in Support of MODIS Land Product Validation

NASA Astrophysics Data System (ADS)

Turner, D. P.; Cohen, W. B.; Gower, S. T.; Ritts, W. D.

2003-12-01

Global products from the Earth-orbiting MODIS sensor include land cover, leaf area index (LAI), FPAR, 8-day gross primary production (GPP), and annual net primary production (NPP) at the 1 km spatial resolution. The BigFoot Project was designed specifically to validate MODIS land products, and has initiated ground measurements at 9 sites representing a wide array of vegetation types. An ecosystem process model (Biome-BGC) is used to generate estimates of GPP and NPP for each 5 km x 5 km BigFoot site. Model inputs include land cover and LAI (from Landsat ETM+), daily meteorological data (from a centrally located eddy covariance flux tower), and soil characteristics. Model derived outputs are validated against field-measured NPP and flux tower-derived GPP. The resulting GPP and NPP estimates are then aggregated to the 1 km resolution for direct spatial comparison with corresponding MODIS products. At the high latitude sites (tundra and boreal forest), the MODIS GPP phenology closely tracks the BigFoot GPP, but there is a high bias in the MODIS GPP. In the temperate zone sites, problems with the timing and magnitude of the MODIS FPAR introduce differences in MODIS GPP compared to the validation data at some sites. However, the MODIS LAI/FPAR data are currently being reprocessed (=Collection 4) and new comparisons will be made for 2002. The BigFoot scaling approach permits precise overlap in spatial and temporal resolution between the MODIS products and BigFoot products, and thus permits the evaluation of specific components of the MODIS NPP algorithm. These components include meteorological inputs from the NASA Data Assimilation Office, LAI and FPAR from other MODIS algorithms, and biome-specific parameters for base respiration rate and light use efficiency.

Demonstrating the Alaska Ocean Observing System in Prince William Sound

NASA Astrophysics Data System (ADS)

Schoch, G. Carl; McCammon, Molly

2013-07-01

The Alaska Ocean Observing System and the Oil Spill Recovery Institute developed a demonstration project over a 5 year period in Prince William Sound. The primary goal was to develop a quasi-operational system that delivers weather and ocean information in near real time to diverse user communities. This observing system now consists of atmospheric and oceanic sensors, and a new generation of computer models to numerically simulate and forecast weather, waves, and ocean circulation. A state of the art data management system provides access to these products from one internet portal at http://www.aoos.org. The project culminated in a 2009 field experiment that evaluated the observing system and performance of the model forecasts. Observations from terrestrial weather stations and weather buoys validated atmospheric circulation forecasts. Observations from wave gages on weather buoys validated forecasts of significant wave heights and periods. There was an emphasis on validation of surface currents forecasted by the ocean circulation model for oil spill response and search and rescue applications. During the 18 day field experiment a radar array mapped surface currents and drifting buoys were deployed. Hydrographic profiles at fixed stations, and by autonomous vehicles along transects, were made to acquire measurements through the water column. Terrestrial weather stations were the most reliable and least costly to operate, and in situ ocean sensors were more costly and considerably less reliable. The radar surface current mappers were the least reliable and most costly but provided the assimilation and validation data that most improved ocean circulation forecasts. We describe the setting of Prince William Sound and the various observational platforms and forecast models of the observing system, and discuss recommendations for future development.

An Empirical Model for Vane-Type Vortex Generators in a Navier-Stokes Code

NASA Technical Reports Server (NTRS)

Dudek, Julianne C.

2005-01-01

An empirical model which simulates the effects of vane-type vortex generators in ducts was incorporated into the Wind-US Navier-Stokes computational fluid dynamics code. The model enables the effects of the vortex generators to be simulated without defining the details of the geometry within the grid, and makes it practical for researchers to evaluate multiple combinations of vortex generator arrangements. The model determines the strength of each vortex based on the generator geometry and the local flow conditions. Validation results are presented for flow in a straight pipe with a counter-rotating vortex generator arrangement, and the results are compared with experimental data and computational simulations using a gridded vane generator. Results are also presented for vortex generator arrays in two S-duct diffusers, along with accompanying experimental data. The effects of grid resolution and turbulence model are also examined.

Design and analysis considerations for deployment mechanisms in a space environment

NASA Technical Reports Server (NTRS)

Vorlicek, P. L.; Gore, J. V.; Plescia, C. T.

1982-01-01

On the second flight of the INTELSAT V spacecraft the time required for successful deployment of the north solar array was longer than originally predicted. The south solar array deployed as predicted. As a result of the difference in deployment times a series of experiments was conducted to locate the cause of the difference. Deployment rate sensitivity to hinge friction and temperature levels was investigated. A digital computer simulation of the deployment was created to evaluate the effects of parameter changes on deployment. Hinge design was optimized for nominal solar array deployment time for future INTELSAT V satellites. The nominal deployment times of both solar arrays on the third flight of INTELSAT V confirms the validity of the simulation and design optimization.

SCARLET I: Mechanization solutions for deployable concentrator optics integrated with rigid array technology

NASA Technical Reports Server (NTRS)

Wachholz, James J.; Murphy, David M.

1996-01-01

The SCARLET I (Solar Concentrator Army with Refractive Linear Element Technology) solar array wing was designed and built to demonstrate, in flight, the feasibility of integrating deployable concentrator optics within the design envelope of typical rigid array technology. Innovative mechanism designs were used throughout the array, and a full series of qualification tests were successfully performed in anticipation of a flight on the Multiple Experiment Transporter to Earth Orbit and Return (METEOR) spacecraft. Even though the Conestoga launch vehicle was unable to place the spacecraft in orbit, the program effort was successful in achieving the milestones of analytical and design development functional validation, and flight qualification, thus leading to a future flight evaluation for the SCARLET technology.

SCARLET I: Mechanization solutions for deployable concentrator optics integrated with rigid array technology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wachholz, J.J.; Murphy, D.M.

1996-05-01

The SCARLET I (Solar Concentrator Army with Refractive Linear Element Technology) solar array wing was designed and built to demonstrate, in flight, the feasibility of integrating deployable concentrator optics within the design envelope of typical rigid array technology. Innovative mechanism designs were used throughout the array, and a full series of qualification tests were successfully performed in anticipation of a flight on the Multiple Experiment Transporter to Earth Orbit and Return (METEOR) spacecraft. Even though the Conestoga launch vehicle was unable to place the spacecraft in orbit, the program effort was successful in achieving the milestones of analytical and designmore » development functional validation, and flight qualification, thus leading to a future flight evaluation for the SCARLET technology.« less

Guided Lamb wave based 2-D spiral phased array for structural health monitoring of thin panel structures

NASA Astrophysics Data System (ADS)

Yoo, Byungseok

2011-12-01

In almost all industries of mechanical, aerospace, and civil engineering fields, structural health monitoring (SHM) technology is essentially required for providing the reliable information of structural integrity of safety-critical structures, which can help reduce the risk of unexpected and sometimes catastrophic failures, and also offer cost-effective inspection and maintenance of the structures. State of the art SHM research on structural damage diagnosis is focused on developing global and real-time technologies to identify the existence, location, extent, and type of damage. In order to detect and monitor the structural damage in plate-like structures, SHM technology based on guided Lamb wave (GLW) interrogation is becoming more attractive due to its potential benefits such as large inspection area coverage in short time, simple inspection mechanism, and sensitivity to small damage. However, the GLW method has a few critical issues such as dispersion nature, mode conversion and separation, and multiple-mode existence. Phased array technique widely used in all aspects of civil, military, science, and medical industry fields may be employed to resolve the drawbacks of the GLW method. The GLW-based phased array approach is able to effectively examine and analyze complicated structural vibration responses in thin plate structures. Because the phased sensor array operates as a spatial filter for the GLW signals, the array signal processing method can enhance a desired signal component at a specific direction while eliminating other signal components from other directions. This dissertation presents the development, the experimental validation, and the damage detection applications of an innovative signal processing algorithm based on two-dimensional (2-D) spiral phased array in conjunction with the GLW interrogation technique. It starts with general backgrounds of SHM and the associated technology including the GLW interrogation method. Then, it is focused on the fundamentals of the GLW-based phased array approach and the development of an innovative signal processing algorithm associated with the 2-D spiral phased sensor array. The SHM approach based on array responses determined by the proposed phased array algorithm implementation is addressed. The experimental validation of the GLW-based 2-D spiral phased array technology and the associated damage detection applications to thin isotropic plate and anisotropic composite plate structures are presented.

Pt/glassy carbon model catalysts prepared from PS-b-P2VP micellar templates.

PubMed

Gu, Yunlong; St-Pierre, Jean; Ploehn, Harry J

2008-11-04

Poly(styrene)-block-poly(2-vinylpyridine) (PS-b-P2VP) diblock copolymer was used as a micellar template to fabricate arrays of Pt nanoparticles on mica and glassy carbon (GC) supports. Polymer micellar deposition yields Pt nanoparticles with tunable particle size and surface number density on both mica and GC. After deposition of precursor-loaded micelles onto GC, oxygen plasma etching removes the polymer shell, followed by thermal treatment with H2 gas to reduce the Pt. Etching conditions were optimized to maximize removal of the polymer while minimizing damage to the GC. Arrays of Pt nanoparticles with controlled size and surface number density can be prepared on mica (for particle size characterization) and GC to make Pt/GC model catalysts. These model catalysts were characterized by tapping mode atomic force microscopy, X-ray photoelectron spectroscopy, and cyclic voltammetry to measure activity for oxidation of carbon monoxide or methanol. Cyclic voltammetry results demonstrate the existence of a correlation between Pt particle size and electrocatalytic properties including onset potential, tolerance of carbonaceous adsorbates, and intrinsic activity (based on active Pt area from CO stripping voltammetry). Results obtained with Pt/GC model catalysts duplicate prior results obtained with Pt/porous carbon catalysts therefore validating the synthesis approach and offering a new, tunable platform to study catalyst structure and other effects such as aging on proton exchange membrane fuel cell (PEMFC) reactions.

A Methodology for Phased Array Radar Threshold Modeling Using the Advanced Propagation Model (APM)

DTIC Science & Technology

2017-10-01

TECHNICAL REPORT 3079 October 2017 A Methodology for Phased Array Radar Threshold Modeling Using the Advanced Propagation Model (APM...Head 55190 Networks Division iii EXECUTIVE SUMMARY This report summarizes the methodology developed to improve the radar threshold modeling...PHASED ARRAY RADAR CONFIGURATION ..................................................................... 1 3. METHODOLOGY

Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy.

PubMed

Jung, Ki-Hong; Dardick, Christopher; Bartley, Laura E; Cao, Peijian; Phetsom, Jirapa; Canlas, Patrick; Seo, Young-Su; Shultz, Michael; Ouyang, Shu; Yuan, Qiaoping; Frank, Bryan C; Ly, Eugene; Zheng, Li; Jia, Yi; Hsia, An-Ping; An, Kyungsook; Chou, Hui-Hsien; Rocke, David; Lee, Geun Cheol; Schnable, Patrick S; An, Gynheung; Buell, C Robin; Ronald, Pamela C

2008-10-06

Studies of gene function are often hampered by gene-redundancy, especially in organisms with large genomes such as rice (Oryza sativa). We present an approach for using transcriptomics data to focus functional studies and address redundancy. To this end, we have constructed and validated an inexpensive and publicly available rice oligonucleotide near-whole genome array, called the rice NSF45K array. We generated expression profiles for light- vs. dark-grown rice leaf tissue and validated the biological significance of the data by analyzing sources of variation and confirming expression trends with reverse transcription polymerase chain reaction. We examined trends in the data by evaluating enrichment of gene ontology terms at multiple false discovery rate thresholds. To compare data generated with the NSF45K array with published results, we developed publicly available, web-based tools (www.ricearray.org). The Oligo and EST Anatomy Viewer enables visualization of EST-based expression profiling data for all genes on the array. The Rice Multi-platform Microarray Search Tool facilitates comparison of gene expression profiles across multiple rice microarray platforms. Finally, we incorporated gene expression and biochemical pathway data to reduce the number of candidate gene products putatively participating in the eight steps of the photorespiration pathway from 52 to 10, based on expression levels of putatively functionally redundant genes. We confirmed the efficacy of this method to cope with redundancy by correctly predicting participation in photorespiration of a gene with five paralogs. Applying these methods will accelerate rice functional genomics.

Clinical application of 2.7M Cytogenetics array for CNV detection in subjects with idiopathic autism and/or intellectual disability.

PubMed

Qiao, Y; Tyson, C; Hrynchak, M; Lopez-Rangel, E; Hildebrand, J; Martell, S; Fawcett, C; Kasmara, L; Calli, K; Harvard, C; Liu, X; Holden, J J A; Lewis, S M E; Rajcan-Separovic, E

2013-02-01

Higher resolution whole-genome arrays facilitate the identification of smaller copy number variations (CNVs) and their integral genes contributing to autism and/or intellectual disability (ASD/ID). Our study describes the use of one of the highest resolution arrays, the Affymetrix(®) Cytogenetics 2.7M array, coupled with quantitative multiplex polymerase chain reaction (PCR) of short fluorescent fragments (QMPSF) for detection and validation of small CNVs. We studied 82 subjects with ASD and ID in total (30 in the validation and 52 in the application cohort) and detected putatively pathogenic CNVs in 6/52 cases from the application cohort. This included a 130-kb maternal duplication spanning exons 64-79 of the DMD gene which was found in a 3-year-old boy manifesting autism and mild neuromotor delays. Other pathogenic CNVs involved 4p14, 12q24.31, 14q32.31, 15q13.2-13.3, and 17p13.3. We established the optimal experimental conditions which, when applied to select small CNVs for QMPSF confirmation, reduced the false positive rate from 60% to 25%. Our work suggests that selection of small CNVs based on the function of integral genes, followed by review of array experimental parameters resulting in highest confirmation rate using multiplex PCR, may enhance the usefulness of higher resolution platforms for ASD and ID gene discovery. © 2012 John Wiley & Sons A/S. Published by Blackwell Publishing Ltd.

a Study of Ultrasonic Wave Propagation Through Parallel Arrays of Immersed Tubes

NASA Astrophysics Data System (ADS)

Cocker, R. P.; Challis, R. E.

1996-06-01

Tubular array structures are a very common component in industrial heat exchanging plant and the non-destructive testing of these arrays is essential. Acoustic methods using microphones or ultrasound are attractive but require a thorough understanding of the acoustic properties of tube arrays. This paper details the development and testing of a small-scale physical model of a tube array to verify the predictions of a theoretical model for acoustic propagation through tube arrays developed by Heckl, Mulholland, and Huang [1-5] as a basis for the consideration of small-scale physical models in the development of non-destructive testing procedures for tube arrays. Their model predicts transmission spectra for plane waves incident on an array of tubes arranged in straight rows. Relative transmission is frequency dependent with bands of high and low attenuation caused by resonances within individual tubes and between tubes in the array. As the number of rows in the array increases the relative transmission spectrum becomes more complex, with increasingly well-defined bands of high and low attenuation. Diffraction of acoustic waves with wavelengths less than the tube spacing is predicted and appears as step reductions in the transmission spectrum at frequencies corresponding to integer multiples of the tube spacing. Experiments with the physical model confirm the principle features of the theoretical treatment.

High-Resolution WRF Forecasts of Lightning Threat

NASA Technical Reports Server (NTRS)

Goodman, S. J.; McCaul, E. W., Jr.; LaCasse, K.

2007-01-01

Tropical Rainfall Measuring Mission (TRMM)lightning and precipitation observations have confirmed the existence of a robust relationship between lightning flash rates and the amount of large precipitating ice hydrometeors in storms. This relationship is exploited, in conjunction with the capabilities of the Weather Research and Forecast (WRF) model, to forecast the threat of lightning from convective storms using the output fields from the model forecasts. The simulated vertical flux of graupel at -15C is used in this study as a proxy for charge separation processes and their associated lightning risk. Initial experiments using 6-h simulations are conducted for a number of case studies for which three-dimensional lightning validation data from the North Alabama Lightning Mapping Array are available. The WRF has been initialized on a 2 km grid using Eta boundary conditions, Doppler radar radial velocity and reflectivity fields, and METAR and ACARS data. An array of subjective and objective statistical metrics is employed to document the utility of the WRF forecasts. The simulation results are also compared to other more traditional means of forecasting convective storms, such as those based on inspection of the convective available potential energy field.

Multivariate curve-resolution analysis of pesticides in water samples from liquid chromatographic-diode array data.

PubMed

Maggio, Rubén M; Damiani, Patricia C; Olivieri, Alejandro C

2011-01-30

Liquid chromatographic-diode array detection data recorded for aqueous mixtures of 11 pesticides show the combined presence of strongly coeluting peaks, distortions in the time dimension between experimental runs, and the presence of potential interferents not modeled by the calibration phase in certain test samples. Due to the complexity of these phenomena, data were processed by a second-order multivariate algorithm based on multivariate curve resolution and alternating least-squares, which allows one to successfully model both the spectral and retention time behavior for all sample constituents. This led to the accurate quantitation of all analytes in a set of validation samples: aldicarb sulfoxide, oxamyl, aldicarb sulfone, methomyl, 3-hydroxy-carbofuran, aldicarb, propoxur, carbofuran, carbaryl, 1-naphthol and methiocarb. Limits of detection in the range 0.1-2 μg mL(-1) were obtained. Additionally, the second-order advantage for several analytes was achieved in samples containing several uncalibrated interferences. The limits of detection for all analytes were decreased by solid phase pre-concentration to values compatible to those officially recommended, i.e., in the order of 5 ng mL(-1). Copyright © 2010 Elsevier B.V. All rights reserved.

Crack Detection in Fibre Reinforced Plastic Structures Using Embedded Fibre Bragg Grating Sensors: Theory, Model Development and Experimental Validation

PubMed Central

Pereira, G. F.; Mikkelsen, L. P.; McGugan, M.

2015-01-01

In a fibre-reinforced polymer (FRP) structure designed using the emerging damage tolerance and structural health monitoring philosophy, sensors and models that describe crack propagation will enable a structure to operate despite the presence of damage by fully exploiting the material’s mechanical properties. When applying this concept to different structures, sensor systems and damage types, a combination of damage mechanics, monitoring technology, and modelling is required. The primary objective of this article is to demonstrate such a combination. This article is divided in three main topics: the damage mechanism (delamination of FRP), the structural health monitoring technology (fibre Bragg gratings to detect delamination), and the finite element method model of the structure that incorporates these concepts into a final and integrated damage-monitoring concept. A novel method for assessing a crack growth/damage event in fibre-reinforced polymer or structural adhesive-bonded structures using embedded fibre Bragg grating (FBG) sensors is presented by combining conventional measured parameters, such as wavelength shift, with parameters associated with measurement errors, typically ignored by the end-user. Conjointly, a novel model for sensor output prediction (virtual sensor) was developed using this FBG sensor crack monitoring concept and implemented in a finite element method code. The monitoring method was demonstrated and validated using glass fibre double cantilever beam specimens instrumented with an array of FBG sensors embedded in the material and tested using an experimental fracture procedure. The digital image correlation technique was used to validate the model prediction by correlating the specific sensor response caused by the crack with the developed model. PMID:26513653

Automatic Digital Hardware Synthesis

DTIC Science & Technology

1990-09-01

VHDL to PALASM, a hardware synthesis language. The PALASM description is then directly implemented into a field programmable gate array (FPGAI using...process of translating VHDL to PALASM, a hardware synthesis language. The PALASM description is then directly implemented into a field programmable gate...allows the engineer to use VHDL to create and validate a design, and then to implement it in a gate array. The development of software o translate VHDL

Dark Current Reduction of IR Detectors

DTIC Science & Technology

2017-10-19

demonstrating a novel dark current reduction approach for dense infrared detector arrays. This technique is based on the diffusion control junction (DCJ...fabricate and test detector arrays with and without DCJs on the same wafer and demonstrate the effectiveness of the DCJ approach in reducing dark current...subject to any penalty for failing to comply with a collection of information if it does not display a currently valid OMB control number. PLEASE

Multistatic Array Sampling Scheme for Fast Near-Field Image Reconstruction

DTIC Science & Technology

2016-01-01

1 Multistatic Array Sampling Scheme for Fast Near-Field Image Reconstruction William F. Moulder, James D. Krieger, Denise T. Maurais-Galejs, Huy...described and validated experimentally with the formation of high quality microwave images. It is further shown that the scheme is more than two orders of... scheme (wherein transmitters and receivers are co-located) which require NTNR transmit-receive elements to achieve the same sampling. The second

Acoustic Propagation Modeling for Marine Hydro-Kinetic Applications

NASA Astrophysics Data System (ADS)

Johnson, C. N.; Johnson, E.

2014-12-01

The combination of riverine, tidal, and wave energy have the potential to supply over one third of the United States' annual electricity demand. However, in order to deploy and test prototypes, and commercial installations, marine hydrokinetic (MHK) devices must meet strict regulatory guidelines that determine the maximum amount of noise that can be generated and sets particular thresholds for determining disturbance and injury caused by noise. An accurate model for predicting the propagation of a MHK source in a real-life hydro-acoustic environment has been established. This model will help promote the growth and viability of marine, water, and hydrokinetic energy by confidently assuring federal regulations are meet and harmful impacts to marine fish and wildlife are minimal. Paracousti, a finite difference solution to the acoustic equations, was originally developed for sound propagation in atmospheric environments and has been successfully validated for a number of different geophysical activities. The three-dimensional numerical implementation is advantageous over other acoustic propagation techniques for a MHK application where the domains of interest have complex 3D interactions from the seabed, banks, and other shallow water effects. A number of different cases for hydro-acoustic environments have been validated by both analytical and numerical results from canonical and benchmark problems. This includes a variety of hydrodynamic and physical environments that may be present in a potential MHK application including shallow and deep water, sloping, and canyon type bottoms, with varying sound speed and density profiles. With the model successfully validated for hydro-acoustic environments more complex and realistic MHK sources from turbines and/or arrays can be modeled.

Analysis of differential gene expression by bead-based fiber-optic array in growth-hormone-secreting pituitary adenomas.

PubMed

Jiang, Zhiquan; Gui, Songbo; Zhang, Yazhuo

2010-09-01

Growth-hormone-secreting pituitary adenomas (GHomas) account for approximately 20% of all pituitary neoplasms. However, the pathogenesis of GHomas remains to be elucidated. To explore the possible pathogenesis of GHomas, we used bead-based fiber-optic arrays to examine the gene expression in five GHomas and compared them to three healthy pituitaries. Four differentially expressed genes were chosen randomly for validation by quantitative real-time reverse transcription-polymerase chain reaction. We then performed pathway analysis on the identified differentially expressed genes using the Kyoto Encyclopedia of Genes and Genomes. Array analysis showed significant increases in the expression of 353 genes and 206 expressed sequence tags (ESTs) and decreases in 565 genes and 29 ESTs. Bioinformatic analysis showed that the genes HIGD1B, HOXB2, ANGPT2, HPGD and BTG2 may play an important role in the tumorigenesis and progression of GHomas. Pathway analysis showed that the wingless-type signaling pathway and extracellular-matrix receptor interactions may play a key role in the tumorigenesis and progression of GHomas. Our data suggested that there are numerous aberrantly expressed genes and pathways involved in the pathogenesis of GHomas. Bead-based fiber-optic arrays combined with pathway analysis of differentially expressed genes appear to be a valid method for investigating the pathogenesis of tumors.

Analysis of differential gene expression by bead-based fiber-optic array in growth-hormone-secreting pituitary adenomas

PubMed Central

JIANG, ZHIQUAN; GUI, SONGBO; ZHANG, YAZHUO

2010-01-01

Growth-hormone-secreting pituitary adenomas (GHomas) account for approximately 20% of all pituitary neoplasms. However, the pathogenesis of GHomas remains to be elucidated. To explore the possible pathogenesis of GHomas, we used bead-based fiber-optic arrays to examine the gene expression in five GHomas and compared them to three healthy pituitaries. Four differentially expressed genes were chosen randomly for validation by quantitative real-time reverse transcription-polymerase chain reaction. We then performed pathway analysis on the identified differentially expressed genes using the Kyoto Encyclopedia of Genes and Genomes. Array analysis showed significant increases in the expression of 353 genes and 206 expressed sequence tags (ESTs) and decreases in 565 genes and 29 ESTs. Bioinformatic analysis showed that the genes HIGD1B, HOXB2, ANGPT2, HPGD and BTG2 may play an important role in the tumorigenesis and progression of GHomas. Pathway analysis showed that the wingless-type signaling pathway and extracellular-matrix receptor interactions may play a key role in the tumorigenesis and progression of GHomas. Our data suggested that there are numerous aberrantly expressed genes and pathways involved in the pathogenesis of GHomas. Bead-based fiber-optic arrays combined with pathway analysis of differentially expressed genes appear to be a valid method for investigating the pathogenesis of tumors. PMID:22993617

Mechanical Design of a 4-Stage ADR for the PIPER mission

NASA Technical Reports Server (NTRS)

James, Bryan L.; Kimball, Mark O.; Shirron, Peter J.; Sampson, Michael A.; Letmate, Richard V.; Jackson, Michael L.

2017-01-01

The four 1,280 bolometer detector arrays that will fly on the balloon borne PIPER mission will be cooled by a 4-stage adiabatic demagnetization refrigerator (ADR). Two of the three mechanically independent ADR assemblies provide thermal isolation to their salt pills through Kevlar suspensions while the other provides thermal isolation to its salt pill through the use of bellows and Vespel material. The ADR integrates with the detector arrays and it sits in a large bucket Dewar containing superfluid liquid helium. This paper will describe the complex mechanical design of the PIPER ADR, and summarize the mechanical analysis done to validate the design.The four 1,280 bolometer detector arrays that will fly on the balloon borne PIPER mission will be cooled by a 4-stage adiabatic demagnetization refrigerator (ADR). Two of the three mechanically independent ADR assemblies provide thermal isolation to their salt pills through Kevlar suspensions while the other provides thermal isolation to its salt pill through the use of bellows and Vespel material. The ADR integrates with the detector arrays and it sits in a large bucket Dewar containing superfluid liquid helium. This paper will describe the complex mechanical design of the PIPER ADR, and summarize the mechanical analysis done to validate the design.

MIDURA (Minefield Detection Using Reconnaissance Assets) 1982-1983 Experimental Test Plan.

DTIC Science & Technology

1982-04-01

3.2.4.2 Subjection Validation at the Salem ONG 27 3.2.4.3 Objective Validity at Fort Huachuca 28 4. TEST FLIGHTS AT ARRAYS IIa, lib, Ilia AND IIIb...subjective validation at the Salem ONG; (3) objective validation at Fort Huachuca. 3.2.4.1 Subjective Image Interpretation at ERIM The initial phase...The ERIM II’s will provide for each image estimate of PD’ Pc and PFA on a 0.00 to 1.00 scale. P is defined as the subjective probability estimate that

A linear refractive photovoltaic concentrator solar array flight experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jones, P.A.; Murphy, D.M.; Piszczor, M.F.

1995-12-31

Concentrator arrays deliver a number of generic benefits for space including high array efficiency, protection from space radiation effects, and minimized plasma interactions. The line focus concentrator concept delivers two added advantages: (1) low-cost mass production of the lens material and, (2) relaxation of precise array tracking requirements to only a single axis. New array designs emphasize lightweight, high stiffness, stow-ability and ease of manufacture and assembly. The linear refractive concentrator can be designed to provide an essentially flat response over a wide range of longitudinal pointing errors for satellites having only single-axis tracking capability. In this paper the authorsmore » address the current status of the SCARLET linear concentrator program with special emphasis on hardware development of an array-level linear refractive concentrator flight experiment. An aggressive, 6-month development and flight validation program, sponsored by the Ballistic Missile Defense Organization (BMDO) and NASA Lewis Research Center, will quantify and verify SCARLET benefits with in-orbit performance measurements.« less

Thin-film sparse boundary array design for passive acoustic mapping during ultrasound therapy.

PubMed

Coviello, Christian M; Kozick, Richard J; Hurrell, Andrew; Smith, Penny Probert; Coussios, Constantin-C

2012-10-01

A new 2-D hydrophone array for ultrasound therapy monitoring is presented, along with a novel algorithm for passive acoustic mapping using a sparse weighted aperture. The array is constructed using existing polyvinylidene fluoride (PVDF) ultrasound sensor technology, and is utilized for its broadband characteristics and its high receive sensitivity. For most 2-D arrays, high-resolution imagery is desired, which requires a large aperture at the cost of a large number of elements. The proposed array's geometry is sparse, with elements only on the boundary of the rectangular aperture. The missing information from the interior is filled in using linear imaging techniques. After receiving acoustic emissions during ultrasound therapy, this algorithm applies an apodization to the sparse aperture to limit side lobes and then reconstructs acoustic activity with high spatiotemporal resolution. Experiments show verification of the theoretical point spread function, and cavitation maps in agar phantoms correspond closely to predicted areas, showing the validity of the array and methodology.

Acoustic environmental accuracy requirements for response determination

NASA Technical Reports Server (NTRS)

Pettitt, M. R.

1983-01-01

A general purpose computer program was developed for the prediction of vehicle interior noise. This program, named VIN, has both modal and statistical energy analysis capabilities for structural/acoustic interaction analysis. The analytic models and their computer implementation were verified through simple test cases with well-defined experimental results. The model was also applied in a space shuttle payload bay launch acoustics prediction study. The computer program processes large and small problems with equal efficiency because all arrays are dynamically sized by program input variables at run time. A data base is built and easily accessed for design studies. The data base significantly reduces the computational costs of such studies by allowing the reuse of the still-valid calculated parameters of previous iterations.

bioWidgets: data interaction components for genomics.

PubMed

Fischer, S; Crabtree, J; Brunk, B; Gibson, M; Overton, G C

1999-10-01

The presentation of genomics data in a perspicuous visual format is critical for its rapid interpretation and validation. Relatively few public database developers have the resources to implement sophisticated front-end user interfaces themselves. Accordingly, these developers would benefit from a reusable toolkit of user interface and data visualization components. We have designed the bioWidget toolkit as a set of JavaBean components. It includes a wide array of user interface components and defines an architecture for assembling applications. The toolkit is founded on established software engineering design patterns and principles, including componentry, Model-View-Controller, factored models and schema neutrality. As a proof of concept, we have used the bioWidget toolkit to create three extendible applications: AnnotView, BlastView and AlignView.

Coherent and Noncoherent Joint Processing of Sonar for Detection of Small Targets in Shallow Water

PubMed Central

Jiang, Jingning; Li, Si; Ding, Zhenping; Pan, Chen; Gong, Xianyi

2018-01-01

A coherent-noncoherent joint processing framework is proposed for active sonar to combine diversity gain and beamforming gain for detection of a small target in shallow water environments. Sonar utilizes widely-spaced arrays to sense environments and illuminate a target of interest from multiple angles. Meanwhile, it exploits spatial diversity for time-reversal focusing to suppress reverberation, mainly strong bottom reverberation. For enhancement of robustness of time-reversal focusing, an adaptive iterative strategy is utilized in the processing framework. A probing signal is firstly transmitted and echoes of a likely target are utilized as steering vectors for the second transmission. With spatial diversity, target bearing and range are estimated using a broadband signal model. Numerical simulations show that the novel sonar outperforms the traditional phased-array sonar due to benefits of spatial diversity. The effectiveness of the proposed framework has been validated by localization of a small target in at-lake experiments. PMID:29642637

Light field geometry of a Standard Plenoptic Camera.

PubMed

Hahne, Christopher; Aggoun, Amar; Haxha, Shyqyri; Velisavljevic, Vladan; Fernández, Juan Carlos Jácome

2014-11-03

The Standard Plenoptic Camera (SPC) is an innovation in photography, allowing for acquiring two-dimensional images focused at different depths, from a single exposure. Contrary to conventional cameras, the SPC consists of a micro lens array and a main lens projecting virtual lenses into object space. For the first time, the present research provides an approach to estimate the distance and depth of refocused images extracted from captures obtained by an SPC. Furthermore, estimates for the position and baseline of virtual lenses which correspond to an equivalent camera array are derived. On the basis of paraxial approximation, a ray tracing model employing linear equations has been developed and implemented using Matlab. The optics simulation tool Zemax is utilized for validation purposes. By designing a realistic SPC, experiments demonstrate that a predicted image refocusing distance at 3.5 m deviates by less than 11% from the simulation in Zemax, whereas baseline estimations indicate no significant difference. Applying the proposed methodology will enable an alternative to the traditional depth map acquisition by disparity analysis.

Modified linear predictive coding approach for moving target tracking by Doppler radar

NASA Astrophysics Data System (ADS)

Ding, Yipeng; Lin, Xiaoyi; Sun, Ke-Hui; Xu, Xue-Mei; Liu, Xi-Yao

2016-07-01

Doppler radar is a cost-effective tool for moving target tracking, which can support a large range of civilian and military applications. A modified linear predictive coding (LPC) approach is proposed to increase the target localization accuracy of the Doppler radar. Based on the time-frequency analysis of the received echo, the proposed approach first real-time estimates the noise statistical parameters and constructs an adaptive filter to intelligently suppress the noise interference. Then, a linear predictive model is applied to extend the available data, which can help improve the resolution of the target localization result. Compared with the traditional LPC method, which empirically decides the extension data length, the proposed approach develops an error array to evaluate the prediction accuracy and thus, adjust the optimum extension data length intelligently. Finally, the prediction error array is superimposed with the predictor output to correct the prediction error. A series of experiments are conducted to illustrate the validity and performance of the proposed techniques.

Clustering and Network Analysis of Reverse Phase Protein Array Data.

PubMed

Byron, Adam

2017-01-01

Molecular profiling of proteins and phosphoproteins using a reverse phase protein array (RPPA) platform, with a panel of target-specific antibodies, enables the parallel, quantitative proteomic analysis of many biological samples in a microarray format. Hence, RPPA analysis can generate a high volume of multidimensional data that must be effectively interrogated and interpreted. A range of computational techniques for data mining can be applied to detect and explore data structure and to form functional predictions from large datasets. Here, two approaches for the computational analysis of RPPA data are detailed: the identification of similar patterns of protein expression by hierarchical cluster analysis and the modeling of protein interactions and signaling relationships by network analysis. The protocols use freely available, cross-platform software, are easy to implement, and do not require any programming expertise. Serving as data-driven starting points for further in-depth analysis, validation, and biological experimentation, these and related bioinformatic approaches can accelerate the functional interpretation of RPPA data.

Approximate Evaluation of Acoustical Focal Beams by Phased Array Probes for Austenitic Weld Inspections

NASA Astrophysics Data System (ADS)

Kono, Naoyuki; Miki, Masahiro; Nakamura, Motoyuki; Ehara, Kazuya

2007-03-01

Phased array techniques are capable of the sensitive detection and precise sizing of flaws or cracks in components of nuclear power plants by using arbitrary focal beams with various depths, positions and angles. Aquantitative investigation of these focal beams is essential for the optimization of array probes, especially for austenitic weld inspection, in order to improve the detectability, sizing accuracy, and signal-to-noise ratio using these beams. In the present work, focal beams generated by phased array probes are calculated based on the Fresnel-Kirchhoff diffraction integral (FKDI) method, and an approximation formula between the actual focal depth and optical focal depth is proposed as an extension of the theory for conventional spherically focusing probes. The validity of the approximation formula for the array probes is confirmed by a comparison with simulation data using the FKDI method, and the experimental data.

Creation of diffraction-limited non-Airy multifocal arrays using a spatially shifted vortex beam

NASA Astrophysics Data System (ADS)

Lin, Han; Gu, Min

2013-02-01

Diffraction-limited non-Airy multifocal arrays are created by focusing a phase-modulated vortex beam through a high numerical-aperture objective. The modulated phase at the back aperture of the objective resulting from the superposition of two concentric phase-modulated vortex beams allows for the generation of a multifocal array of cylindrically polarized non-Airy patterns. Furthermore, we shift the spatial positions of the phase vortices to manipulate the intensity distribution at each focal spot, leading to the creation of a multifocal array of split-ring patterns. Our method is experimentally validated by generating the predicted phase modulation through a spatial light modulator. Consequently, the spatially shifted circularly polarized vortex beam adopted in a dynamic laser direct writing system facilitates the fabrication of a split-ring microstructure array in a polymer material by a single exposure of a femtosecond laser beam.

Linear antenna array optimization using flower pollination algorithm.

PubMed

Saxena, Prerna; Kothari, Ashwin

2016-01-01

Flower pollination algorithm (FPA) is a new nature-inspired evolutionary algorithm used to solve multi-objective optimization problems. The aim of this paper is to introduce FPA to the electromagnetics and antenna community for the optimization of linear antenna arrays. FPA is applied for the first time to linear array so as to obtain optimized antenna positions in order to achieve an array pattern with minimum side lobe level along with placement of deep nulls in desired directions. Various design examples are presented that illustrate the use of FPA for linear antenna array optimization, and subsequently the results are validated by benchmarking along with results obtained using other state-of-the-art, nature-inspired evolutionary algorithms such as particle swarm optimization, ant colony optimization and cat swarm optimization. The results suggest that in most cases, FPA outperforms the other evolutionary algorithms and at times it yields a similar performance.

Effects of the EVCAM chemical validation library on differentiation using marker gene expression in lmouse embryonic stem cells

EPA Science Inventory

The adherent cell differentiation and cytotoxicity (ACDC) assay was used to profile the effects of the ECVAM EST validation chemical library (19 compounds) on J1 mouse embryonic stem cells (mESC). PCR-based TaqMan Low Density Arrays (TLDA) provided a high-content assessment of al...

A Proposed Methodology for the Conceptualization, Operationalization, and Empirical Validation of the Concept of Information Need

ERIC Educational Resources Information Center

Afzal, Waseem

2017-01-01

Introduction: The purpose of this paper is to propose a methodology to conceptualize, operationalize, and empirically validate the concept of information need. Method: The proposed methodology makes use of both qualitative and quantitative perspectives, and includes a broad array of approaches such as literature reviews, expert opinions, focus…

Nuclear Energy Knowledge and Validation Center (NEKVaC) Needs Workshop Summary Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gougar, Hans

2015-02-01

The Department of Energy (DOE) has made significant progress developing simulation tools to predict the behavior of nuclear systems with greater accuracy and of increasing our capability to predict the behavior of these systems outside of the standard range of applications. These analytical tools require a more complex array of validation tests to accurately simulate the physics and multiple length and time scales. Results from modern simulations will allow experiment designers to narrow the range of conditions needed to bound system behavior and to optimize the deployment of instrumentation to limit the breadth and cost of the campaign. Modern validation,more » verification and uncertainty quantification (VVUQ) techniques enable analysts to extract information from experiments in a systematic manner and provide the users with a quantified uncertainty estimate. Unfortunately, the capability to perform experiments that would enable taking full advantage of the formalisms of these modern codes has progressed relatively little (with some notable exceptions in fuels and thermal-hydraulics); the majority of the experimental data available today is the "historic" data accumulated over the last decades of nuclear systems R&D. A validated code-model is a tool for users. An unvalidated code-model is useful for code developers to gain understanding, publish research results, attract funding, etc. As nuclear analysis codes have become more sophisticated, so have the measurement and validation methods and the challenges that confront them. A successful yet cost-effective validation effort requires expertise possessed only by a few, resources possessed only by the well-capitalized (or a willing collective), and a clear, well-defined objective (validating a code that is developed to satisfy the need(s) of an actual user). To that end, the Idaho National Laboratory established the Nuclear Energy Knowledge and Validation Center to address the challenges of modern code validation and to manage the knowledge from past, current, and future experimental campaigns. By pulling together the best minds involved in code development, experiment design, and validation to establish and disseminate best practices and new techniques, the Nuclear Energy Knowledge and Validation Center (NEKVaC or the ‘Center’) will be a resource for industry, DOE Programs, and academia validation efforts.« less

Prediction of tolerance in children with IgE mediated cow's milk allergy by microarray profiling and chemometric approach.

PubMed

Wulfert, F; Sanyasi, G; Tongen, L; Watanabe, L A; Wang, X; Renault, N K; Falcone, F H; Jacob, C M A; Alcocer, M J C

2012-08-31

The sera of a retrospective cohort (n=41) composed of children with well characterized cow's milk allergy collected from multiple visits were analyzed using a protein microarray system measuring four classes of immunoglobulins. The frequency of the visits, age and gender distribution reflected real situation faced by the clinicians at a pediatric reference center for food allergy in São Paulo, Brazil. The profiling array results have shown that total IgG and IgA share similar specificity whilst IgM and in particular IgE are distantly related. The correlation of specificity of IgE and IgA is variable amongst the patients and this relationship cannot be used to predict atopy or the onset of tolerance to milk. The array profiling technique has corroborated the clinical selection criteria for this cohort albeit it clearly suggested that 4 out of the 41 patients might have allergies other than milk origin. There was also a good correlation between the array data and ImmunoCAP results, casein in particular. By using qualitative and quantitative multivariate analysis routines it was possible to produce validated statistical models to predict with reasonable accuracy the onset of tolerance to milk proteins. If expanded to larger study groups, the array profiling in combination with the multivariate techniques show potential to improve the prognostic of milk allergic patients. Copyright © 2012 Elsevier B.V. All rights reserved.

Near infrared spectroscopy (NIRS) for on-line determination of quality parameters in intact olives.

PubMed

Salguero-Chaparro, Lourdes; Baeten, Vincent; Fernández-Pierna, Juan A; Peña-Rodríguez, Francisco

2013-08-15

The acidity, moisture and fat content in intact olive fruits were determined on-line using a NIR diode array instrument, operating on a conveyor belt. Four sets of calibrations models were obtained by means of different combinations from samples collected during 2009-2010 and 2010-2011, using full-cross and external validation. Several preprocessing treatments such as derivatives and scatter correction were investigated by using the root mean square error of cross-validation (RMSECV) and prediction (RMSEP), as control parameters. The results obtained showed RMSECV values of 2.54-3.26 for moisture, 2.35-2.71 for fat content and 2.50-3.26 for acidity parameters, depending on the calibration model developed. Calibrations for moisture, fat content and acidity gave residual predictive deviation (RPD) values of 2.76, 2.37 and 1.60, respectively. Although, it is concluded that the on-line NIRS prediction results were acceptable for the three parameters measured in intact olive samples in movement, the models developed must be improved in order to increase their accuracy before final NIRS implementation at mills. Copyright © 2013 Elsevier Ltd. All rights reserved.

Application of a Halbach magnetic array for long-range cell and particle separations in biological samples

NASA Astrophysics Data System (ADS)

Kang, Joo H.; Driscoll, Harry; Super, Michael; Ingber, Donald E.

2016-05-01

Here, we describe a versatile application of a planar Halbach permanent magnet array for an efficient long-range magnetic separation of living cells and microparticles over distances up to 30 mm. A Halbach array was constructed from rectangular bar magnets using 3D-printed holders and compared to a conventional alternating array of identical magnets. We theoretically predicted the superiority of the Halbach array for a long-range magnetic separation and then experimentally validated that the Halbach configuration outperforms the alternating array for isolating magnetic microparticles or microparticle-bound bacterial cells at longer distances. Magnetophoretic velocities (ymag) of magnetic particles (7.9 μm diameter) induced by the Halbach array in a microfluidic device were significantly higher and extended over a larger area than those induced by the alternating magnet array (ymag = 178 versus 0 μm/s at 10 mm, respectively). When applied to 50 ml tubes (˜30 mm diameter), the Halbach array removed >95% of Staphylococcus aureus bacterial cells bound with 1 μm magnetic particles compared to ˜70% removed using the alternating array. In addition, the Halbach array enabled manipulation of 1 μm magnetic beads in a deep 96-well plate for ELISA applications, which was not possible with the conventional magnet arrays. Our analysis demonstrates the utility of the Halbach array for the future design of devices for high-throughput magnetic separations of cells, molecules, and toxins.

Modeling Charge Collection in Detector Arrays

NASA Technical Reports Server (NTRS)

Hardage, Donna (Technical Monitor); Pickel, J. C.

2003-01-01

A detector array charge collection model has been developed for use as an engineering tool to aid in the design of optical sensor missions for operation in the space radiation environment. This model is an enhancement of the prototype array charge collection model that was developed for the Next Generation Space Telescope (NGST) program. The primary enhancements were accounting for drift-assisted diffusion by Monte Carlo modeling techniques and implementing the modeling approaches in a windows-based code. The modeling is concerned with integrated charge collection within discrete pixels in the focal plane array (FPA), with high fidelity spatial resolution. It is applicable to all detector geometries including monolithc charge coupled devices (CCDs), Active Pixel Sensors (APS) and hybrid FPA geometries based on a detector array bump-bonded to a readout integrated circuit (ROIC).

External validation of Vascular Study Group of New England risk predictive model of mortality after elective abdominal aorta aneurysm repair in the Vascular Quality Initiative and comparison against established models.

PubMed

Eslami, Mohammad H; Rybin, Denis V; Doros, Gheorghe; Siracuse, Jeffrey J; Farber, Alik

2018-01-01

The purpose of this study is to externally validate a recently reported Vascular Study Group of New England (VSGNE) risk predictive model of postoperative mortality after elective abdominal aortic aneurysm (AAA) repair and to compare its predictive ability across different patients' risk categories and against the established risk predictive models using the Vascular Quality Initiative (VQI) AAA sample. The VQI AAA database (2010-2015) was queried for patients who underwent elective AAA repair. The VSGNE cases were excluded from the VQI sample. The external validation of a recently published VSGNE AAA risk predictive model, which includes only preoperative variables (age, gender, history of coronary artery disease, chronic obstructive pulmonary disease, cerebrovascular disease, creatinine levels, and aneurysm size) and planned type of repair, was performed using the VQI elective AAA repair sample. The predictive value of the model was assessed via the C-statistic. Hosmer-Lemeshow method was used to assess calibration and goodness of fit. This model was then compared with the Medicare, Vascular Governance Northwest model, and Glasgow Aneurysm Score for predicting mortality in VQI sample. The Vuong test was performed to compare the model fit between the models. Model discrimination was assessed in different risk group VQI quintiles. Data from 4431 cases from the VSGNE sample with the overall mortality rate of 1.4% was used to develop the model. The internally validated VSGNE model showed a very high discriminating ability in predicting mortality (C = 0.822) and good model fit (Hosmer-Lemeshow P = .309) among the VSGNE elective AAA repair sample. External validation on 16,989 VQI cases with an overall 0.9% mortality rate showed very robust predictive ability of mortality (C = 0.802). Vuong tests yielded a significant fit difference favoring the VSGNE over then Medicare model (C = 0.780), Vascular Governance Northwest (0.774), and Glasgow Aneurysm Score (0.639). Across the 5 risk quintiles, the VSGNE model predicted observed mortality significantly with great accuracy. This simple VSGNE AAA risk predictive model showed very high discriminative ability in predicting mortality after elective AAA repair among a large external independent sample of AAA cases performed by a diverse array of physicians nationwide. The risk score based on this simple VSGNE model can reliably stratify patients according to their risk of mortality after elective AAA repair better than other established models. Copyright © 2017 Society for Vascular Surgery. Published by Elsevier Inc. All rights reserved.

Reliability model of disk arrays RAID-5 with data striping

NASA Astrophysics Data System (ADS)

Rahman, P. A.; D'K Novikova Freyre Shavier, G.

2018-03-01

Within the scope of the this scientific paper, the simplified reliability model of disk arrays RAID-5 (redundant arrays of inexpensive disks) and an advanced reliability model offered by the authors taking into the consideration nonzero time of the faulty disk replacement and different failure rates of disks in normal state of the disk array and in degraded and rebuild states are discussed. The formula obtained by the authors for calculation of the mean time to data loss (MTTDL) of the RAID-5 disk arrays on basis of the advanced model is also presented. Finally, the technique of estimation of the initial reliability parameters, which are used in the reliability model, and the calculation examples of the mean time to data loss of the RAID-5 disk arrays for the different number of disks are also given.

TALENs and CRISPR/Cas9 fuel genetically engineered clinically relevant Xenopus tropicalis tumor models.

PubMed

Naert, Thomas; Van Nieuwenhuysen, Tom; Vleminckx, Kris

2017-01-01

The targeted nuclease revolution (TALENs, CRISPR/Cas9) now allows Xenopus researchers to rapidly generate custom on-demand genetic knockout models. These novel methods to perform reverse genetics are unprecedented and are fueling a wide array of human disease models within the aquatic diploid model organism Xenopus tropicalis (X. tropicalis). This emerging technology review focuses on the tools to rapidly generate genetically engineered X. tropicalis models (GEXM), with a focus on establishment of genuine genetic and clinically relevant cancer models. We believe that due to particular advantageous characteristics, outlined within this review, GEXM will become a valuable alternative animal model for modeling human cancer. Furthermore, we provide perspectives of how GEXM will be used as a platform for elucidation of novel therapeutic targets and for preclinical drug validation. Finally, we also discuss some future prospects on how the recent expansions and adaptations of the CRISPR/Cas9 toolbox might influence and push forward X. tropicalis cancer research. © 2017 Wiley Periodicals, Inc.

Involvement of MicroRNAs in Lung Cancer Biology and Therapy

PubMed Central

Liu, Xi; Sempere, Lorenzo F.; Guo, Yongli; Korc, Murray; Kauppinen, Sakari; Freemantle, Sarah J.; Dmitrovsky, Ethan

2011-01-01

MicroRNAs (miRNAs) are a class of small RNAs that regulate gene expression. Expression profiles of specific miRNAs have improved cancer diagnosis and classification and even provided prognostic information in many human cancers, including lung cancer. Tumor suppressive and oncogenic miRNAs were uncovered in lung carcinogenesis. The biological functions of these miRNAs in lung cancer were recently validated in well characterized cellular, murine transgenic as well as transplantable lung cancer models and in human paired normal-malignant lung tissue banks and tissue arrays. Tumor suppressive and oncogenic miRNAs that were identified in lung cancer will be reviewed here. Emphasis is placed on highlighting those functionally validated miRNAs that are not only biomarkers of lung carcinogenesis, but also candidate pharmacologic targets. How these miRNA findings advance an understanding of lung cancer biology and could improve lung cancer therapy are discussed in this article. PMID:21420030

An IBM PC-based math model for space station solar array simulation

NASA Technical Reports Server (NTRS)

Emanuel, E. M.

1986-01-01

This report discusses and documents the design, development, and verification of a microcomputer-based solar cell math model for simulating the Space Station's solar array Initial Operational Capability (IOC) reference configuration. The array model is developed utilizing a linear solar cell dc math model requiring only five input parameters: short circuit current, open circuit voltage, maximum power voltage, maximum power current, and orbit inclination. The accuracy of this model is investigated using actual solar array on orbit electrical data derived from the Solar Array Flight Experiment/Dynamic Augmentation Experiment (SAFE/DAE), conducted during the STS-41D mission. This simulator provides real-time simulated performance data during the steady state portion of the Space Station orbit (i.e., array fully exposed to sunlight). Eclipse to sunlight transients and shadowing effects are not included in the analysis, but are discussed briefly. Integrating the Solar Array Simulator (SAS) into the Power Management and Distribution (PMAD) subsystem is also discussed.

Design and Use of Microphone Directional Arrays for Aeroacoustic Measurements

NASA Technical Reports Server (NTRS)

Humphreys, William M., Jr.; Brooks, Thomas F.; Hunter, William W., Jr.; Meadows, Kristine R.

1998-01-01

An overview of the development of two microphone directional arrays for aeroacoustic testing is presented. These arrays were specifically developed to measure airframe noise in the NASA Langley Quiet Flow Facility. A large aperture directional array using 35 flush-mounted microphones was constructed to obtain high resolution noise localization maps around airframe models. This array possesses a maximum diagonal aperture size of 34 inches. A unique logarithmic spiral layout design was chosen for the targeted frequency range of 2-30 kHz. Complementing the large array is a small aperture directional array, constructed to obtain spectra and directivity information from regions on the model. This array, possessing 33 microphones with a maximum diagonal aperture size of 7.76 inches, is easily moved about the model in elevation and azimuth. Custom microphone shading algorithms have been developed to provide a frequency- and position-invariant sensing area from 10-40 kHz with an overall targeted frequency range for the array of 5-60 kHz. Both arrays are employed in acoustic measurements of a 6 percent of full scale airframe model consisting of a main element NACA 632-215 wing section with a 30 percent chord half-span flap. Representative data obtained from these measurements is presented, along with details of the array calibration and data post-processing procedures.

A simplified solar cell array modelling program

NASA Technical Reports Server (NTRS)

Hughes, R. D.

1982-01-01

As part of the energy conversion/self sufficiency efforts of DSN engineering, it was necessary to have a simplified computer model of a solar photovoltaic (PV) system. This article describes the analysis and simplifications employed in the development of a PV cell array computer model. The analysis of the incident solar radiation, steady state cell temperature and the current-voltage characteristics of a cell array are discussed. A sample cell array was modelled and the results are presented.

Modelling of the acoustic field of a multi-element HIFU array scattered by human ribs

NASA Astrophysics Data System (ADS)

Gélat, Pierre; ter Haar, Gail; Saffari, Nader

2011-09-01

The efficacy of high-intensity focused ultrasound (HIFU) for the treatment of a range of different cancers, including those of the liver, prostate and breast, has been demonstrated. As a non-invasive focused therapy, HIFU offers considerable advantages over techniques such as chemotherapy and surgical resection in terms of reduced risk of harmful side effects. Despite this, there are a number of significant challenges which currently hinder its widespread clinical application. One of these challenges is the need to transmit sufficient energy through the rib cage to induce tissue necrosis in the required volume whilst minimizing the formation of side lobes. Multi-element random-phased arrays are currently showing great promise in overcoming the limitations of single-element transducers. Nevertheless, successful treatment of a patient with liver tumours requires a thorough understanding of the way in which the ultrasonic pressure field from a HIFU array is scattered by the rib cage. In order to address this, a boundary element approach based on a generalized minimal residual (GMRES) implementation of the Burton-Miller formulation was used in conjunction with phase conjugation techniques to focus the field of a 256-element random HIFU array behind human ribs at locations requiring intercostal and transcostal treatment. Simulations were carried out on a 3D mesh of quadratic pressure patches generated using CT scan anatomical data for adult ribs 9-12 on the right side. The methodology was validated on spherical and cylindrical scatterers. Field calculations were also carried out for idealized ribs, consisting of arrays of strip-like scatterers, demonstrating effects of splitting at the focus. This method has the advantage of fully accounting for the effect of scattering and diffraction in 3D under continuous wave excitation.

Perception SoC Based on an Ultrasonic Array of Sensors: Efficient DSP Core Implementation and Subsequent Experimental Results

NASA Astrophysics Data System (ADS)

Kassem, A.; Sawan, M.; Boukadoum, M.; Haidar, A.

2005-12-01

We are concerned with the design, implementation, and validation of a perception SoC based on an ultrasonic array of sensors. The proposed SoC is dedicated to ultrasonic echography applications. A rapid prototyping platform is used to implement and validate the new architecture of the digital signal processing (DSP) core. The proposed DSP core efficiently integrates all of the necessary ultrasonic B-mode processing modules. It includes digital beamforming, quadrature demodulation of RF signals, digital filtering, and envelope detection of the received signals. This system handles 128 scan lines and 6400 samples per scan line with a[InlineEquation not available: see fulltext.] angle of view span. The design uses a minimum size lookup memory to store the initial scan information. Rapid prototyping using an ARM/FPGA combination is used to validate the operation of the described system. This system offers significant advantages of portability and a rapid time to market.

Bayesian nonlinear structural FE model and seismic input identification for damage assessment of civil structures

NASA Astrophysics Data System (ADS)

Astroza, Rodrigo; Ebrahimian, Hamed; Li, Yong; Conte, Joel P.

2017-09-01

A methodology is proposed to update mechanics-based nonlinear finite element (FE) models of civil structures subjected to unknown input excitation. The approach allows to jointly estimate unknown time-invariant model parameters of a nonlinear FE model of the structure and the unknown time histories of input excitations using spatially-sparse output response measurements recorded during an earthquake event. The unscented Kalman filter, which circumvents the computation of FE response sensitivities with respect to the unknown model parameters and unknown input excitations by using a deterministic sampling approach, is employed as the estimation tool. The use of measurement data obtained from arrays of heterogeneous sensors, including accelerometers, displacement sensors, and strain gauges is investigated. Based on the estimated FE model parameters and input excitations, the updated nonlinear FE model can be interrogated to detect, localize, classify, and assess damage in the structure. Numerically simulated response data of a three-dimensional 4-story 2-by-1 bay steel frame structure with six unknown model parameters subjected to unknown bi-directional horizontal seismic excitation, and a three-dimensional 5-story 2-by-1 bay reinforced concrete frame structure with nine unknown model parameters subjected to unknown bi-directional horizontal seismic excitation are used to illustrate and validate the proposed methodology. The results of the validation studies show the excellent performance and robustness of the proposed algorithm to jointly estimate unknown FE model parameters and unknown input excitations.

Effect of embedded dexamethasone in cochlear implant array on insertion forces in an artificial model of scala tympani.

PubMed

Nguyen, Yann; Bernardeschi, Daniele; Kazmitcheff, Guillaume; Miroir, Mathieu; Vauchel, Thomas; Ferrary, Evelyne; Sterkers, Olivier

2015-02-01

Loading otoprotective drug into cochlear implant might change its mechanical properties, thus compromising atraumatic insertion. This study evaluated the effect of incorporation of dexamethasone (DXM) in the silicone of cochlear implant arrays on insertion forces. Local administration of DXM with embedded array can potentially reduce inflammation and fibrosis after cochlear implantation procedure to improve hearing preservation and reduce long-term impedances. Four models of arrays have been tested: 0.5-mm distal diameter array (n = 5) used as a control, drug-free 0.4-mm distal diameter array (n = 5), 0.4-mm distal diameter array with 1% eluded DXM silicone (n = 5), and 0.4-mm distal diameter array with 10% eluded DXM silicone (n = 5). Via a motorized insertion bench, each array has been inserted into an artificial scala tympani model. The forces were recorded by a 6-axis force sensor. Each array was tested seven times for a total number of 140 insertions. During the first 10-mm insertion, no difference between the four models was observed. From 10- to 24-mm insertion, the 0.5-mm distal diameter array presented higher insertion forces than the drug-free 0.4-mm distal diameter arrays, with or without DXM. Friction forces for drug-free 0.4-mm distal diameter array and 0.4-mm distal diameter DXM eluded arrays were similar on all insertion lengths. Incorporation of DXM in silicone for cochlear implant design does not change electrode array insertion forces. It does not raise the risk of trauma during array insertion, making it suitable for long-term in situ administration to the cochlea.

Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations.

PubMed

Yáñez, J M; Naswa, S; López, M E; Bassini, L; Correa, K; Gilbey, J; Bernatchez, L; Norris, A; Neira, R; Lhorente, J P; Schnable, P S; Newman, S; Mileham, A; Deeb, N; Di Genova, A; Maass, A

2016-07-01

A considerable number of single nucleotide polymorphisms (SNPs) are required to elucidate genotype-phenotype associations and determine the molecular basis of important traits. In this work, we carried out de novo SNP discovery accounting for both genome duplication and genetic variation from American and European salmon populations. A total of 9 736 473 nonredundant SNPs were identified across a set of 20 fish by whole-genome sequencing. After applying six bioinformatic filtering steps, 200 K SNPs were selected to develop an Affymetrix Axiom(®) myDesign Custom Array. This array was used to genotype 480 fish representing wild and farmed salmon from Europe, North America and Chile. A total of 159 099 (79.6%) SNPs were validated as high quality based on clustering properties. A total of 151 509 validated SNPs showed a unique position in the genome. When comparing these SNPs against 238 572 markers currently available in two other Atlantic salmon arrays, only 4.6% of the SNP overlapped with the panel developed in this study. This novel high-density SNP panel will be very useful for the dissection of economically and ecologically relevant traits, enhancing breeding programmes through genomic selection as well as supporting genetic studies in both wild and farmed populations of Atlantic salmon using high-resolution genomewide information. © 2016 John Wiley & Sons Ltd.

Single-Phase Single-Stage Grid Tied Solar PV System with Active Power Filtering Using Power Balance Theory

NASA Astrophysics Data System (ADS)

Singh, Yashi; Hussain, Ikhlaq; Singh, Bhim; Mishra, Sukumar

2018-06-01

In this paper, power quality features such as harmonics mitigation, power factor correction with active power filtering are addressed in a single-stage, single-phase solar photovoltaic (PV) grid tied system. The Power Balance Theory (PBT) with perturb and observe based maximum power point tracking algorithm is proposed for the mitigation of power quality problems in a solar PV grid tied system. The solar PV array is interfaced to a single phase AC grid through a Voltage Source Converter (VSC), which provides active power flow from a solar PV array to the grid as well as to the load and it performs harmonics mitigation using PBT based control. The solar PV array power varies with sunlight and due to this, the solar PV grid tied VSC works only 8-10 h per day. At night, when PV power is zero, the VSC works as an active power filter for power quality improvement, and the load active power is delivered by the grid to the load connected at the point of common coupling. This increases the effective utilization of a VSC. The system is modelled and simulated using MATLAB and simulated responses of the system at nonlinear loads and varying environmental conditions are also validated experimentally on a prototype developed in the laboratory.

Modal analysis of 2-D sedimentary basin from frequency domain decomposition of ambient vibration array recordings

NASA Astrophysics Data System (ADS)

Poggi, Valerio; Ermert, Laura; Burjanek, Jan; Michel, Clotaire; Fäh, Donat

2015-01-01

Frequency domain decomposition (FDD) is a well-established spectral technique used in civil engineering to analyse and monitor the modal response of buildings and structures. The method is based on singular value decomposition of the cross-power spectral density matrix from simultaneous array recordings of ambient vibrations. This method is advantageous to retrieve not only the resonance frequencies of the investigated structure, but also the corresponding modal shapes without the need for an absolute reference. This is an important piece of information, which can be used to validate the consistency of numerical models and analytical solutions. We apply this approach using advanced signal processing to evaluate the resonance characteristics of 2-D Alpine sedimentary valleys. In this study, we present the results obtained at Martigny, in the Rhône valley (Switzerland). For the analysis, we use 2 hr of ambient vibration recordings from a linear seismic array deployed perpendicularly to the valley axis. Only the horizontal-axial direction (SH) of the ground motion is considered. Using the FDD method, six separate resonant frequencies are retrieved together with their corresponding modal shapes. We compare the mode shapes with results from classical standard spectral ratios and numerical simulations of ambient vibration recordings.

Single-Phase Single-Stage Grid Tied Solar PV System with Active Power Filtering Using Power Balance Theory

NASA Astrophysics Data System (ADS)

Singh, Yashi; Hussain, Ikhlaq; Singh, Bhim; Mishra, Sukumar

2018-03-01

In this paper, power quality features such as harmonics mitigation, power factor correction with active power filtering are addressed in a single-stage, single-phase solar photovoltaic (PV) grid tied system. The Power Balance Theory (PBT) with perturb and observe based maximum power point tracking algorithm is proposed for the mitigation of power quality problems in a solar PV grid tied system. The solar PV array is interfaced to a single phase AC grid through a Voltage Source Converter (VSC), which provides active power flow from a solar PV array to the grid as well as to the load and it performs harmonics mitigation using PBT based control. The solar PV array power varies with sunlight and due to this, the solar PV grid tied VSC works only 8-10 h per day. At night, when PV power is zero, the VSC works as an active power filter for power quality improvement, and the load active power is delivered by the grid to the load connected at the point of common coupling. This increases the effective utilization of a VSC. The system is modelled and simulated using MATLAB and simulated responses of the system at nonlinear loads and varying environmental conditions are also validated experimentally on a prototype developed in the laboratory.

Detection and quantitation of chromosomal mosaicism in human blastocysts using copy number variation sequencing.

PubMed

Ruttanajit, Tida; Chanchamroen, Sujin; Cram, David S; Sawakwongpra, Kritchakorn; Suksalak, Wanwisa; Leng, Xue; Fan, Junmei; Wang, Li; Yao, Yuanqing; Quangkananurug, Wiwat

2016-02-01

Currently, our understanding of the nature and reproductive potential of blastocysts associated with trophectoderm (TE) lineage chromosomal mosaicism is limited. The objective of this study was to first validate copy number variation sequencing (CNV-Seq) for measuring the level of mosaicism and second, examine the nature and level of mosaicism in TE biopsies of patient's blastocysts. TE biopy samples were analysed by array comparative genomic hybridization (CGH) and CNV-Seq to discriminate between euploid, aneuploid and mosaic blastocysts. Using artificial models of TE mosaicism for five different chromosomes, CNV-Seq accurately and reproducibly quantitated mosaicism at levels of 50% and 20%. In a comparative 24-chromosome study of 49 blastocysts by array CGH and CNV-Seq, 43 blastocysts (87.8%) had a concordant diagnosis and 6 blastocysts (12.2%) were discordant. The discordance was attributed to low to medium levels of chromosomal mosaicism (30-70%) not detected by array CGH. In an expanded study of 399 blastocysts using CNV-Seq as the sole diagnostic method, the proportion of diploid-aneuploid mosaics (34, 8.5%) was significantly higher than aneuploid mosaics (18, 4.5%) (p < 0.02). Mosaicism is a significant chromosomal abnormality associated with the TE lineage of human blastocysts that can be reliably and accurately detected by CNV-Seq. © 2015 John Wiley & Sons, Ltd.

Nonlinear chiro-optical amplification by plasmonic nanolens arrays formed via directed assembly of gold nanoparticles.

PubMed

Biswas, Sushmita; Liu, Xiaoying; Jarrett, Jeremy W; Brown, Dean; Pustovit, Vitaliy; Urbas, Augustine; Knappenberger, Kenneth L; Nealey, Paul F; Vaia, Richard A

2015-03-11

Metal nanoparticle assemblies are promising materials for nanophotonic applications due to novel linear and nonlinear optical properties arising from their plasmon modes. However, scalable fabrication approaches that provide both precision nano- and macroarchitectures, and performance commensurate with design and model predictions, have been limiting. Herein, we demonstrate controlled and efficient nanofocusing of the fundamental and second harmonic frequencies of incident linearly and circularly polarized light using reduced symmetry gold nanoparticle dimers formed by surface-directed assembly of colloidal nanoparticles. Large ordered arrays (>100) of these C∞v heterodimers (ratio of radii R1/R2 = 150 nm/50 nm = 3; gap distance l = 1 ± 0.5 nm) exhibit second harmonic generation and structure-dependent chiro-optic activity with the circular dichroism ratio of individual heterodimers varying less than 20% across the array, demonstrating precision and uniformity at a large scale. These nonlinear optical properties were mediated by interparticle plasmon coupling. Additionally, the versatility of the fabrication is demonstrated on a variety of substrates including flexible polymers. Numerical simulations guide architecture design as well as validating the experimental results, thus confirming the ability to optimize second harmonic yield and induce chiro-optical responses for compact sensors, optical modulators, and tunable light sources by rational design and fabrication of the nanostructures.

3D MHD Simulations of Radial Wire Array Z-pinches

NASA Astrophysics Data System (ADS)

Niasse, N.; Chittenden, J. P.; Bland, S. N.; Suzuki-Vidal, F. A.; Hall, G. N.; Lebedev, S. V.; Calamy, H.; Zucchini, F.; Lassalle, F.; Bedoch, J. P.

2009-01-01

Recent experiments carried out on the MAGPIE (1 MA, 250 ns), OEDIPE (730 kA, 1.5 μs) and SPHINX (4 MA, 700 ns)[1] facilities have shown the relatively high level of scalability of the Radial Wire Array Z-pinches. These configurations where the wires stretch radially outwards from a central cathode offer numerous advantages over standard cylindrical arrays. In particular, imploding in a very stable and compact way, they seem suitable for coupling to small scale hohlraums. Making use of the 3D resistive magneto-hydrodynamic code GORGON[2] developed at Imperial College, the dynamic of the radial wire arrays is investigated. Influence of the cathode hotspots and wires angle on the x-ray emissions is also discussed. Comparison with experiments is offered to validate the numerical studies.

OAO-3 end of mission power subsystem evaluation

NASA Technical Reports Server (NTRS)

Tasevoli, M.

1982-01-01

End of mission tests were performed on the OAO-3 power subsystem in three component areas: solar array, nickel-cadmium batteries and the On-Board Processor (OBP) power boost operation. Solar array evaluation consisted of analyzing array performance characteristics and comparing them to earlier flight data. Measured solar array degradation of 14.1 to 17.7% after 8 1/3 years is in good agreement with theortical radiation damage losses. Battery discharge characteristics were compared to results of laboratory life cycle tests performed on similar cells. Comparison of cell voltage profils reveals close correlation and confirms the validity of real time life cycle simulation. The successful operation of the system in the OBP/power boost regulation mode demonstrates the excellent life, reliability and greater system utilization of power subsystems using maximum power trackers.

Quasi-Talbot effect of orbital angular momentum beams for generation of optical vortex arrays by multiplexing metasurface design.

PubMed

Gao, Hui; Li, Yang; Chen, Lianwei; Jin, Jinjin; Pu, Mingbo; Li, Xiong; Gao, Ping; Wang, Changtao; Luo, Xiangang; Hong, Minghui

2018-01-03

The quasi-Talbot effect of orbital angular momentum (OAM) beams, in which the centers are placed in a rotationally symmetric position, is demonstrated both numerically and experimentally for the first time. Since its multiplication factor is much higher than the conventional fractional Talbot effect, the quasi-Talbot effect can be used in the generation of vortex beam arrays. A metasurface based on this theory was designed and fabricated to test the validity of this assumption. The agreement between the numerical and measured results suggests the practicability of this method to realize vortex beam arrays with high integrated levels, which can open a new door to achieve various potential uses related to optical vortex arrays in integrated optical systems for wide-ranging applications.

MISR Level 2 TOA/Cloud Versioning

Atmospheric Science Data Center

2017-10-11

... public release. Add trap singular matrix condition. Add test for invalid look vectors. Use different metadata to test for validity of time tags. Fix incorrectly addressed array. Introduced bug ...

ARRAY OPTIMIZATION FOR TIDAL ENERGY EXTRACTION IN A TIDAL CHANNEL – A NUMERICAL MODELING ANALYSIS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Zhaoqing; Wang, Taiping; Copping, Andrea

This paper presents an application of a hydrodynamic model to simulate tidal energy extraction in a tidal dominated estuary in the Pacific Northwest coast. A series of numerical experiments were carried out to simulate tidal energy extraction with different turbine array configurations, including location, spacing and array size. Preliminary model results suggest that array optimization for tidal energy extraction in a real-world site is a very complex process that requires consideration of multiple factors. Numerical models can be used effectively to assist turbine siting and array arrangement in a tidal turbine farm for tidal energy extraction.

A Deconvolution Approach for the Mapping of Acoustic Sources (DAMAS) Determined from Phased Microphone Arrays

NASA Technical Reports Server (NTRS)

Brooks, Thomas F.; Humphreys, William M.

2006-01-01

Current processing of acoustic array data is burdened with considerable uncertainty. This study reports an original methodology that serves to demystify array results, reduce misinterpretation, and accurately quantify position and strength of acoustic sources. Traditional array results represent noise sources that are convolved with array beamform response functions, which depend on array geometry, size (with respect to source position and distributions), and frequency. The Deconvolution Approach for the Mapping of Acoustic Sources (DAMAS) method removes beamforming characteristics from output presentations. A unique linear system of equations accounts for reciprocal influence at different locations over the array survey region. It makes no assumption beyond the traditional processing assumption of statistically independent noise sources. The full rank equations are solved with a new robust iterative method. DAMAS is quantitatively validated using archival data from a variety of prior high-lift airframe component noise studies, including flap edge/cove, trailing edge, leading edge, slat, and calibration sources. Presentations are explicit and straightforward, as the noise radiated from a region of interest is determined by simply summing the mean-squared values over that region. DAMAS can fully replace existing array processing and presentations methodology in most applications. It appears to dramatically increase the value of arrays to the field of experimental acoustics.

Efficient Analysis of Systems Biology Markup Language Models of Cellular Populations Using Arrays.

PubMed

Watanabe, Leandro; Myers, Chris J

2016-08-19

The Systems Biology Markup Language (SBML) has been widely used for modeling biological systems. Although SBML has been successful in representing a wide variety of biochemical models, the core standard lacks the structure for representing large complex regular systems in a standard way, such as whole-cell and cellular population models. These models require a large number of variables to represent certain aspects of these types of models, such as the chromosome in the whole-cell model and the many identical cell models in a cellular population. While SBML core is not designed to handle these types of models efficiently, the proposed SBML arrays package can represent such regular structures more easily. However, in order to take full advantage of the package, analysis needs to be aware of the arrays structure. When expanding the array constructs within a model, some of the advantages of using arrays are lost. This paper describes a more efficient way to simulate arrayed models. To illustrate the proposed method, this paper uses a population of repressilator and genetic toggle switch circuits as examples. Results show that there are memory benefits using this approach with a modest cost in runtime.

An Ultrasonic Guided Wave Method to Estimate Applied Biaxial Loads (Preprint)

DTIC Science & Technology

2011-11-01

VALIDATION A fatigue test was performed with an array of six surface-bonded PZT transducers on a 6061 aluminum plate as shown in Figure 4. The specimen...direct paths of propagation are oriented at different angles. This method is applied to experimental sparse array data recorded during a fatigue test...and the additional complication of the resulting fatigue cracks interfering with some of the direct arrivals is addressed via proper selection of

Detection and classification of gaseous sulfur compounds by solid electrolyte cyclic voltammetry of cermet sensor array.

PubMed

Kramer, Kirsten E; Rose-Pehrsson, Susan L; Hammond, Mark H; Tillett, Duane; Streckert, Holger H

2007-02-12

Electrochemical sensors composed of a ceramic-metallic (cermet) solid electrolyte are used for the detection of gaseous sulfur compounds SO(2), H(2)S, and CS(2) in a study involving 11 toxic industrial chemical (TIC) compounds. The study examines a sensor array containing four cermet sensors varying in electrode-electrolyte composition, designed to offer selectivity for multiple compounds. The sensors are driven by cyclic voltammetry to produce a current-voltage profile for each analyte. Raw voltammograms are processed by background subtraction of clean air, and the four sensor signals are concatenated to form one vector of points. The high-resolution signal is compressed by wavelet transformation and a probabilistic neural network is used for classification. In this study, training data from one sensor array was used to formulate models which were validated with data from a second sensor array. Of the 11 gases studied, 3 that contained sulfur produced the strongest responses and were successfully analyzed when the remaining compounds were treated as interferents. Analytes were measured from 10 to 200% of their threshold-limited value (TLV) according to the 8-h time weighted average (TWA) exposure limits defined by the National Institute of Occupational Safety and Health (NIOSH). True positive classification rates of 93.3, 96.7, and 76.7% for SO(2), H(2)S, and CS(2), respectively, were achieved for prediction of one sensor unit when a second sensor was used for modeling. True positive rates of 83.3, 90.0, and 90.0% for SO(2), H(2)S, and CS(2), respectively, were achieved for the second sensor unit when the first sensor unit was used for modeling. Most of the misclassifications were for low concentration levels (such 10-25% TLV) in which case the compound was classified as clean air. Between the two sensors, the false positive rates were 2.2% or lower for the three sulfur compounds, 0.9% or lower for the interferents (eight remaining analytes), and 5.8% or lower for clean air. The cermet sensor arrays used in this analysis are rugged, low cost, reusable, and show promise for multiple compound detection at parts-per-million (ppm) levels.

Single Lab Validation of a LC/UV/FLD/MS Method for Simultaneous Determination of Water-soluble Vitamins in Multi-Vitamin Dietary Supplements

USDA-ARS?s Scientific Manuscript database

The purpose of this study was to develop a Single-Lab Validated Method using high-performance liquid chromatography (HPLC) with different detectors (diode array detector - DAD, fluorescence detector - FLD, and mass spectrometer - MS) for determination of seven B-complex vitamins (B1 - thiamin, B2 – ...

Classification of 2-dimensional array patterns: assembling many small neural networks is better than using a large one.

PubMed

Chen, Liang; Xue, Wei; Tokuda, Naoyuki

2010-08-01

In many pattern classification/recognition applications of artificial neural networks, an object to be classified is represented by a fixed sized 2-dimensional array of uniform type, which corresponds to the cells of a 2-dimensional grid of the same size. A general neural network structure, called an undistricted neural network, which takes all the elements in the array as inputs could be used for problems such as these. However, a districted neural network can be used to reduce the training complexity. A districted neural network usually consists of two levels of sub-neural networks. Each of the lower level neural networks, called a regional sub-neural network, takes the elements in a region of the array as its inputs and is expected to output a temporary class label, called an individual opinion, based on the partial information of the entire array. The higher level neural network, called an assembling sub-neural network, uses the outputs (opinions) of regional sub-neural networks as inputs, and by consensus derives the label decision for the object. Each of the sub-neural networks can be trained separately and thus the training is less expensive. The regional sub-neural networks can be trained and performed in parallel and independently, therefore a high speed can be achieved. We prove theoretically in this paper, using a simple model, that a districted neural network is actually more stable than an undistricted neural network in noisy environments. We conjecture that the result is valid for all neural networks. This theory is verified by experiments involving gender classification and human face recognition. We conclude that a districted neural network is highly recommended for neural network applications in recognition or classification of 2-dimensional array patterns in highly noisy environments. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Design and Imaging of Ground-Based Multiple-Input Multiple-Output Synthetic Aperture Radar (MIMO SAR) with Non-Collinear Arrays.

PubMed

Hu, Cheng; Wang, Jingyang; Tian, Weiming; Zeng, Tao; Wang, Rui

2017-03-15

Multiple-Input Multiple-Output (MIMO) radar provides much more flexibility than the traditional radar thanks to its ability to realize far more observation channels than the actual number of transmit and receive (T/R) elements. In designing the MIMO imaging radar arrays, the commonly used virtual array theory generally assumes that all elements are on the same line. However, due to the physical size of the antennas and coupling effect between T/R elements, a certain height difference between T/R arrays is essential, which will result in the defocusing of edge points of the scene. On the other hand, the virtual array theory implies far-field approximation. Therefore, with a MIMO array designed by this theory, there will exist inevitable high grating lobes in the imaging results of near-field edge points of the scene. To tackle these problems, this paper derives the relationship between target's point spread function (PSF) and pattern of T/R arrays, by which the design criterion is presented for near-field imaging MIMO arrays. Firstly, the proper height between T/R arrays is designed to focus the near-field edge points well. Secondly, the far-field array is modified to suppress the grating lobes in the near-field area. Finally, the validity of the proposed methods is verified by two simulations and an experiment.

Design and Imaging of Ground-Based Multiple-Input Multiple-Output Synthetic Aperture Radar (MIMO SAR) with Non-Collinear Arrays

PubMed Central

Hu, Cheng; Wang, Jingyang; Tian, Weiming; Zeng, Tao; Wang, Rui

2017-01-01

Multiple-Input Multiple-Output (MIMO) radar provides much more flexibility than the traditional radar thanks to its ability to realize far more observation channels than the actual number of transmit and receive (T/R) elements. In designing the MIMO imaging radar arrays, the commonly used virtual array theory generally assumes that all elements are on the same line. However, due to the physical size of the antennas and coupling effect between T/R elements, a certain height difference between T/R arrays is essential, which will result in the defocusing of edge points of the scene. On the other hand, the virtual array theory implies far-field approximation. Therefore, with a MIMO array designed by this theory, there will exist inevitable high grating lobes in the imaging results of near-field edge points of the scene. To tackle these problems, this paper derives the relationship between target’s point spread function (PSF) and pattern of T/R arrays, by which the design criterion is presented for near-field imaging MIMO arrays. Firstly, the proper height between T/R arrays is designed to focus the near-field edge points well. Secondly, the far-field array is modified to suppress the grating lobes in the near-field area. Finally, the validity of the proposed methods is verified by two simulations and an experiment. PMID:28294996

Comparative Performance and Model Agreement of Three Common Photovoltaic Array Configurations.

PubMed

Boyd, Matthew T

2018-02-01

Three grid-connected monocrystalline silicon arrays on the National Institute of Standards and Technology (NIST) campus in Gaithersburg, MD have been instrumented and monitored for 1 yr, with only minimal gaps in the data sets. These arrays range from 73 kW to 271 kW, and all use the same module, but have different tilts, orientations, and configurations. One array is installed facing east and west over a parking lot, one in an open field, and one on a flat roof. Various measured relationships and calculated standard metrics have been used to compare the relative performance of these arrays in their different configurations. Comprehensive performance models have also been created in the modeling software pvsyst for each array, and its predictions using measured on-site weather data are compared to the arrays' measured outputs. The comparisons show that all three arrays typically have monthly performance ratios (PRs) above 0.75, but differ significantly in their relative output, strongly correlating to their operating temperature and to a lesser extent their orientation. The model predictions are within 5% of the monthly delivered energy values except during the winter months, when there was intermittent snow on the arrays, and during maintenance and other outages.

Modeling Transport of Turbulent Fluxes in a Heterogeneous Urban Canopy Using a Spatially Explicit Energy Balance

NASA Astrophysics Data System (ADS)

Moody, M.; Bailey, B.; Stoll, R., II

2017-12-01

Understanding how changes in the microclimate near individual plants affects the surface energy budget is integral to modeling land-atmosphere interactions and a wide range of near surface atmospheric boundary layer phenomena. In urban areas, the complex geometry of the urban canopy layer results in large spatial deviations of turbulent fluxes further complicating the development of models. Accurately accounting for this heterogeneity in order to model urban energy and water use requires a sub-plant level understanding of microclimate variables. We present analysis of new experimental field data taken in and around two Blue Spruce (Picea pungens) trees at the University of Utah in 2015. The test sites were chosen in order study the effects of heterogeneity in an urban environment. An array of sensors were placed in and around the conifers to quantify transport in the soil-plant-atmosphere continuum: radiative fluxes, temperature, sap fluxes, etc. A spatial array of LEMS (Local Energy Measurement Systems) were deployed to obtain pressure, surrounding air temperature and relative humidity. These quantities are used to calculate the radiative and turbulent fluxes. Relying on measurements alone is insufficient to capture the complexity of microclimate distribution as one reaches sub-plant scales. A spatially-explicit radiation and energy balance model previously developed for deciduous trees was extended to include conifers. The model discretizes the tree into isothermal sub-volumes on which energy balances are performed and utilizes incoming radiation as the primary forcing input. The radiative transfer component of the model yields good agreement between measured and modeled upward longwave and shortwave radiative fluxes. Ultimately, the model was validated through an examination of the full energy budget including radiative and turbulent fluxes through isolated Picea pungens in an urban environment.

High-throughput prediction of eucalypt lignin syringyl/guaiacyl content using multivariate analysis: a comparison between mid-infrared, near-infrared, and Raman spectroscopies for model development

PubMed Central

2014-01-01

Background In order to rapidly and efficiently screen potential biofuel feedstock candidates for quintessential traits, robust high-throughput analytical techniques must be developed and honed. The traditional methods of measuring lignin syringyl/guaiacyl (S/G) ratio can be laborious, involve hazardous reagents, and/or be destructive. Vibrational spectroscopy can furnish high-throughput instrumentation without the limitations of the traditional techniques. Spectral data from mid-infrared, near-infrared, and Raman spectroscopies was combined with S/G ratios, obtained using pyrolysis molecular beam mass spectrometry, from 245 different eucalypt and Acacia trees across 17 species. Iterations of spectral processing allowed the assembly of robust predictive models using partial least squares (PLS). Results The PLS models were rigorously evaluated using three different randomly generated calibration and validation sets for each spectral processing approach. Root mean standard errors of prediction for validation sets were lowest for models comprised of Raman (0.13 to 0.16) and mid-infrared (0.13 to 0.15) spectral data, while near-infrared spectroscopy led to more erroneous predictions (0.18 to 0.21). Correlation coefficients (r) for the validation sets followed a similar pattern: Raman (0.89 to 0.91), mid-infrared (0.87 to 0.91), and near-infrared (0.79 to 0.82). These statistics signify that Raman and mid-infrared spectroscopy led to the most accurate predictions of S/G ratio in a diverse consortium of feedstocks. Conclusion Eucalypts present an attractive option for biofuel and biochemical production. Given the assortment of over 900 different species of Eucalyptus and Corymbia, in addition to various species of Acacia, it is necessary to isolate those possessing ideal biofuel traits. This research has demonstrated the validity of vibrational spectroscopy to efficiently partition different potential biofuel feedstocks according to lignin S/G ratio, significantly reducing experiment and analysis time and expense while providing non-destructive, accurate, global, predictive models encompassing a diverse array of feedstocks. PMID:24955114

Oblique shock structures formed during the ablation phase of aluminium wire array z-pinches

DOE Office of Scientific and Technical Information (OSTI.GOV)

Swadling, G. F.; Lebedev, S. V.; Niasse, N.

A series of experiments has been conducted in order to investigate the azimuthal structures formed by the interactions of cylindrically converging plasma flows during the ablation phase of aluminium wire array Z pinch implosions. These experiments were carried out using the 1.4 MA, 240 ns MAGPIE generator at Imperial College London. The main diagnostic used in this study was a two-colour, end-on, Mach-Zehnder imaging interferometer, sensitive to the axially integrated electron density of the plasma. The data collected in these experiments reveal the strongly collisional dynamics of the aluminium ablation streams. The structure of the flows is dominated by amore » dense network of oblique shock fronts, formed by supersonic collisions between adjacent ablation streams. An estimate for the range of the flow Mach number (M = 6.2-9.2) has been made based on an analysis of the observed shock geometry. Combining this measurement with previously published Thomson Scattering measurements of the plasma flow velocity by Harvey-Thompson et al.[Physics of Plasmas 19, 056303 (2012)] allowed us to place limits on the range of the ZT{sub e} of the plasma. The detailed and quantitative nature of the dataset lends itself well as a source for model validation and code verification exercises, as the exact shock geometry is sensitive to many of the plasma parameters. Comparison of electron density data produced through numerical modelling with the Gorgon 3D MHD code demonstrates that the code is able to reproduce the collisional dynamics observed in aluminium arrays reasonably well.« less

SkinEthic Laboratories, a company devoted to develop and produce in vitro alternative methods to animal use.

PubMed

de Brugerolle, Anne

2007-01-01

SkinEthic Laboratories is a France-based biotechnology company recognised as the world leader in tissue engineering. SkinEthic is devoted to develop and produce reliable and robust in vitro alternative methods to animal use in cosmetic, chemical and pharmaceutical industries. SkinEthic models provide relevant tools for efficacy and safety screening tests in order to support an integrated decision-making during research and development phases. Some screening tests are referenced and validated as alternatives to animal use (Episkin), others are in the process of validation under ECVAM and OECD guidelines. SkinEthic laboratories provide a unique and joined experience of more than 20 years from Episkin SNC and SkinEthic SA. Their unique cell culture process allows in vitro reconstructed human tissues with well characterized histology, functionality and ultrastructure features to be mass produced. Our product line includes skin models: a reconstructed human epidermis with a collagen layer, Episkin, reconstructed human epidermis without or with melanocytes (with a tanning degree from phototype II to VI) and a reconstructed human epithelium, i.e. cornea, and other mucosa, i.e. oral, gingival, oesophageal and vaginal. Our philosophy is based on 3 main commitments: to support our customers by providing robust and reliable models, to ensure training and education in using validated protocols, allowing a large array of raw materials, active ingredients and finished products in solid, liquid, powder, cream or gel form to be screened, and, to provide a dedicated service to our partners.

Empirical Measurement and Model Validation of Infrared Spectra of Contaminated Surfaces

NASA Astrophysics Data System (ADS)

Archer, Sean

The goal of this thesis was to validate predicted infrared spectra of liquid contaminated surfaces from a micro-scale bi-directional reflectance distribution function (BRDF) model through the use of empirical measurement. Liquid contaminated surfaces generally require more sophisticated radiometric modeling to numerically describe surface properties. The Digital Image and Remote Sensing Image Generation (DIRSIG) model utilizes radiative transfer modeling to generate synthetic imagery for a variety of applications. Aside from DIRSIG, a micro-scale model known as microDIRSIG has been developed as a rigorous ray tracing physics-based model that could predict the BRDF of geometric surfaces that are defined as micron to millimeter resolution facets. The model offers an extension from the conventional BRDF models by allowing contaminants to be added as geometric objects to a micro-facet surface. This model was validated through the use of Fourier transform infrared spectrometer measurements. A total of 18 different substrate and contaminant combinations were measured and compared against modeled outputs. The substrates used in this experiment were wood and aluminum that contained three different paint finishes. The paint finishes included no paint, Krylon ultra-flat black, and Krylon glossy black. A silicon based oil (SF96) was measured out and applied to each surface to create three different contamination cases for each surface. Radiance in the longwave infrared region of the electromagnetic spectrum was measured by a Design and Prototypes (D&P) Fourier transform infrared spectrometer and a Physical Sciences Inc. Adaptive Infrared Imaging Spectroradiometer (AIRIS). The model outputs were compared against the measurements quantitatively in both the emissivity and radiance domains. A temperature emissivity separation (TES) algorithm had to be applied to the measured radiance spectra for comparison with the microDIRSIG predicted emissivity spectra. The model predicted emissivity spectra was also forward modeled through a DIRSIG simulation for comparisons to the radiance measurements. The results showed a promising agreement for homogeneous surfaces with liquid contamination that could be well characterized geometrically. Limitations arose in substrates that were modeled as homogeneous surfaces, but had spatially varying artifacts due to uncertainties with contaminant and surface interactions. There is high desire for accurate physics based modeling of liquid contaminated surfaces and this validation framework may be extended to include a wider array of samples for more realistic natural surfaces that are often found in real world scenarios.

Medicina array demonstrator: calibration and radiation pattern characterization using a UAV-mounted radio-frequency source

NASA Astrophysics Data System (ADS)

Pupillo, G.; Naldi, G.; Bianchi, G.; Mattana, A.; Monari, J.; Perini, F.; Poloni, M.; Schiaffino, M.; Bolli, P.; Lingua, A.; Aicardi, I.; Bendea, H.; Maschio, P.; Piras, M.; Virone, G.; Paonessa, F.; Farooqui, Z.; Tibaldi, A.; Addamo, G.; Peverini, O. A.; Tascone, R.; Wijnholds, S. J.

2015-06-01

One of the most challenging aspects of the new-generation Low-Frequency Aperture Array (LFAA) radio telescopes is instrument calibration. The operational LOw-Frequency ARray (LOFAR) instrument and the future LFAA element of the Square Kilometre Array (SKA) require advanced calibration techniques to reach the expected outstanding performance. In this framework, a small array, called Medicina Array Demonstrator (MAD), has been designed and installed in Italy to provide a test bench for antenna characterization and calibration techniques based on a flying artificial test source. A radio-frequency tone is transmitted through a dipole antenna mounted on a micro Unmanned Aerial Vehicle (UAV) (hexacopter) and received by each element of the array. A modern digital FPGA-based back-end is responsible for both data-acquisition and data-reduction. A simple amplitude and phase equalization algorithm is exploited for array calibration owing to the high stability and accuracy of the developed artificial test source. Both the measured embedded element patterns and calibrated array patterns are found to be in good agreement with the simulated data. The successful measurement campaign has demonstrated that a UAV-mounted test source provides a means to accurately validate and calibrate the full-polarized response of an antenna/array in operating conditions, including consequently effects like mutual coupling between the array elements and contribution of the environment to the antenna patterns. A similar system can therefore find a future application in the SKA-LFAA context.

Development of a new type of germanium detector for dark matter searches

NASA Astrophysics Data System (ADS)

Wei, Wenzhao

Monte Carlo simulation is an important tool used to develop a better understanding of important physical processes. This thesis describes three Monte Carlo simulations used to understand germanium detector response to low energy nuclear recoils and radiogenic backgrounds for direct dark matter searches. The first simulation is the verification of Barker-Mei model, a theoretical model for calculating the ionization efficiency for germanium detector for the energy range of 1 - 100 keV. Utilizing the shape analysis, a bin-to-bin comparison between simulation and experimental data was performed for verifying the accuracy of the Barker-Mei model. A percentage difference within 4% was achieved between data and simulation, which showed the validity of the Barker-Mei model. The second simulation is the study of a new type of germanium detector for n/gamma discrimination at 77 K with plasma time difference in pulse shape. Due to the poor time resolution, conventional P-type Point Contact (PPC) and coaxial germanium detectors are not capable of discriminating nuclear recoils from electron recoils. In this thesis, a new idea of using great detector granularity and plasma time difference in pulse shape to discriminate nuclear recoils from electron recoils with planar germanium detectors in strings was discussed. The anticipated sensitivity of this new detector array is shown for detecting dark matter. The last simulation is a study of a new type of germanium-detector array serving as a PMT screening facility for ultra-low background dark matter experiments using noble liquid xenon as detector material such LUX/LZ and XENON100/XENON1T. A well-shaped germanium detector array and a PMT were simulated to study the detector response to the signal and background for a better understanding of the radiogenic gamma rays from PMTs. The detector efficiency and other detector performance were presented in this work.

Validation of a Piezoelectric Sensor Array-Based Device for Measurement of Carotid-Femoral Pulse Wave Velocity: The Philips Prototype.

PubMed

Xu, Shao-Kun; Hong, Xiang-Fei; Cheng, Yi-Bang; Liu, Chang-Yuan; Li, Yan; Yin, Bin; Wang, Ji-Guang

2018-03-01

Multiple piezoelectric pressure mechanotransducers topologized into an array might improve efficiency and accuracy in collecting arterial pressure waveforms for measurement of pulse wave velocity (PWV). In the present study, we validated a piezoelectric sensor array-based prototype (Philips) against the validated and clinically widely used Complior device (Alam Medical). We recruited 33 subjects with a wide distribution of PWV. For the validation, PWV was measured sequentially with the Complior device (four times) and the Philips prototype (three times). With the 99 paired PWV values, we investigated the agreement between the Philips prototype and the Complior device using Pearson correlation analysis and Bland-Altman plot. We also performed analysis on the determinants and reproducibility of PWV measured with both devices. The correlation coefficient for PWV measured with the two devices was 0.92 ( p < 0.0001). Compared with the Complior device, the Philips prototype slightly overestimated PWV by 0.24 (± 2 standard deviations, ± 1.91) m/s, especially when PWV was high. The correlation coefficient between the difference and the average of the Philips and Complior measurements was 0.21 ( p = 0.035). Nonetheless, they had similar determinants. Age, mean arterial pressure, and sex altogether explained 81.6 and 83.9% of the variance of PWV values measured with the Philips prototype and Complior device, respectively. When the two extremes of the three PWV values measured with the Philips prototype and the Complior device were investigated, the coefficients of variation were 8.26 and 3.26%, respectively. Compared with the Complior device, the Philips prototype had similar accuracy, determinants, and reproducibility in measuring PWV.

Control of complex components with Smart Flexible Phased Arrays.

PubMed

Casula, O; Poidevin, C; Cattiaux, G; Dumas, Ph

2006-12-22

The inspection is mainly performed in contact with ultrasonic wedge transducers; However, the shape cannot fit the changing geometries of components (butt weld, nozzle, elbow). The variable thickness of the coupling layer, between the wedge and the local surface, leads to beam distortions and losses of sensitivity. Previous studies have shown that these two phenomena contribute to reduce the inspection performances leading to shadow area, split beam.... Flexible phased arrays have been developed to fit the complex profile and improve such controls. The radiating surface is composed with independent piezoelectric elements mechanically assembled and a profilometer, embedded in the transducer, measures the local distortion. The computed shape is used by an algorithm to compute in real-time the adapted delay laws compensating the distortions of 2D or 3D profiles. Those delay laws are transferred to the real-time UT acquisition system, which applies them to the piezoelectric elements. This self-adaptive process preserves, during the scanning, the features of the focused beam (orientation and focal depth) in the specimen. To validate the concept of the Smart Flexible Phased Array Transducer, prototypes have been integrated to detect flaws machined in mock-ups with realistic irregular 2D and 3D shapes. Inspections have been carried out on samples showing the enhancement performances of the "Smart Flexible Phased Array" and validating the mechanical and acoustical behaviors of these probes.

Modelling spatiotemporal change using multidimensional arrays Meng

NASA Astrophysics Data System (ADS)

Lu, Meng; Appel, Marius; Pebesma, Edzer

2017-04-01

The large variety of remote sensors, model simulations, and in-situ records provide great opportunities to model environmental change. The massive amount of high-dimensional data calls for methods to integrate data from various sources and to analyse spatiotemporal and thematic information jointly. An array is a collection of elements ordered and indexed in arbitrary dimensions, which naturally represent spatiotemporal phenomena that are identified by their geographic locations and recording time. In addition, array regridding (e.g., resampling, down-/up-scaling), dimension reduction, and spatiotemporal statistical algorithms are readily applicable to arrays. However, the role of arrays in big geoscientific data analysis has not been systematically studied: How can arrays discretise continuous spatiotemporal phenomena? How can arrays facilitate the extraction of multidimensional information? How can arrays provide a clean, scalable and reproducible change modelling process that is communicable between mathematicians, computer scientist, Earth system scientist and stakeholders? This study emphasises on detecting spatiotemporal change using satellite image time series. Current change detection methods using satellite image time series commonly analyse data in separate steps: 1) forming a vegetation index, 2) conducting time series analysis on each pixel, and 3) post-processing and mapping time series analysis results, which does not consider spatiotemporal correlations and ignores much of the spectral information. Multidimensional information can be better extracted by jointly considering spatial, spectral, and temporal information. To approach this goal, we use principal component analysis to extract multispectral information and spatial autoregressive models to account for spatial correlation in residual based time series structural change modelling. We also discuss the potential of multivariate non-parametric time series structural change methods, hierarchical modelling, and extreme event detection methods to model spatiotemporal change. We show how array operations can facilitate expressing these methods, and how the open-source array data management and analytics software SciDB and R can be used to scale the process and make it easily reproducible.

Wireless Sensor Array Network DoA Estimation from Compressed Array Data via Joint Sparse Representation.

PubMed

Yu, Kai; Yin, Ming; Luo, Ji-An; Wang, Yingguan; Bao, Ming; Hu, Yu-Hen; Wang, Zhi

2016-05-23

A compressive sensing joint sparse representation direction of arrival estimation (CSJSR-DoA) approach is proposed for wireless sensor array networks (WSAN). By exploiting the joint spatial and spectral correlations of acoustic sensor array data, the CSJSR-DoA approach provides reliable DoA estimation using randomly-sampled acoustic sensor data. Since random sampling is performed at remote sensor arrays, less data need to be transmitted over lossy wireless channels to the fusion center (FC), and the expensive source coding operation at sensor nodes can be avoided. To investigate the spatial sparsity, an upper bound of the coherence of incoming sensor signals is derived assuming a linear sensor array configuration. This bound provides a theoretical constraint on the angular separation of acoustic sources to ensure the spatial sparsity of the received acoustic sensor array signals. The Cram e ´ r-Rao bound of the CSJSR-DoA estimator that quantifies the theoretical DoA estimation performance is also derived. The potential performance of the CSJSR-DoA approach is validated using both simulations and field experiments on a prototype WSAN platform. Compared to existing compressive sensing-based DoA estimation methods, the CSJSR-DoA approach shows significant performance improvement.

Peptide Nucleic Acid Array for Detection of Point Mutations in Hepatitis B Virus Associated with Antiviral Resistance ▿ †

PubMed Central

Jang, Hyunjung; Kim, Jihyun; Choi, Jae-jin; Son, Yeojin; Park, Heekyung

2010-01-01

The detection of antiviral-resistant hepatitis B virus (HBV) mutations is important for monitoring the response to treatment and for effective treatment decisions. We have developed an array using peptide nucleic acid (PNA) probes to detect point mutations in HBV associated with antiviral resistance. PNA probes were designed to detect mutations associated with resistance to lamivudine, adefovir, and entecavir. The PNA array assay was sensitive enough to detect 102 copies/ml. The PNA array assay was able to detect mutants present in more than 5% of the virus population when the total HBV DNA concentration was greater than 104 copies/ml. We analyzed a total of 68 clinical samples by this assay and validated its usefulness by comparing results to those of the sequencing method. The PNA array correctly identified viral mutants and has high concordance (98.3%) with direct sequencing in detecting antiviral-resistant mutations. Our results showed that the PNA array is a rapid, sensitive, and easily applicable assay for the detection of antiviral-resistant mutation in HBV. Thus, the PNA array is a useful and powerful diagnostic tool for the detection of point mutations or polymorphisms. PMID:20573874

Review on structured optical field generated from array beams

NASA Astrophysics Data System (ADS)

Hou, Tianyue; Zhou, Pu; Ma, Yanxing; Zhi, Dong

2018-03-01

Structured optical field (SOF), which includes vortex beams, non-diffraction beams, cylindrical vector beams and so on, has been under intensive investigation theoretically and experimentally in recent years. Generally, current research focus on the extraordinary properties (non-diffraction propagation, helical wavefront, rotation of electrical field, et al), which can be widely applied in micro-particle manipulation, super-resolution imaging, free-space communication and so on. There are mainly two technical routes, that is, inner-cavity and outer-cavity (spatial light modulators, diffractive phase holograms, q-plates). To date, most of the SOFs generated from both technical routes involves with single monolithic beam. As a novel technical route, SOF based on array beams has the advantage in more flexible freedom degree and power scaling potential. In this paper, research achievements in SOF generation based on array beams are arranged and discussed in detail. Moreover, experiment of generating exotic beam by array beams is introduced, which illustrates that SOF generated from array beams is theoretically valid and experimentally feasible. SOF generated from array beams is also beneficial for capacity increasing and data receiving for free-space optical communication systems at long distance.

Estimating the efficiency of fish cross-species cDNA microarray hybridization.

PubMed

Cohen, Raphael; Chalifa-Caspi, Vered; Williams, Timothy D; Auslander, Meirav; George, Stephen G; Chipman, James K; Tom, Moshe

2007-01-01

Using an available cross-species cDNA microarray is advantageous for examining multigene expression patterns in non-model organisms, saving the need for construction of species-specific arrays. The aim of the present study was to estimate relative efficiency of cross-species hybridizations across bony fishes, using bioinformatics tools. The methodology may serve also as a model for similar evaluations in other taxa. The theoretical evaluation was done by substituting comparative whole-transcriptome sequence similarity information into the thermodynamic hybridization equation. Complementary DNA sequence assemblages of nine fish species belonging to common families or suborders and distributed across the bony fish taxonomic branch were selected for transcriptome-wise comparisons. Actual cross-species hybridizations among fish of different taxonomic distances were used to validate and eventually to calibrate the theoretically computed relative efficiencies.

Application of Fourier transform near-infrared spectroscopy combined with high-performance liquid chromatography in rapid and simultaneous determination of essential components in crude Radix Scrophulariae.

PubMed

Li, Xiaomeng; Fang, Dansi; Cong, Xiaodong; Cao, Gang; Cai, Hao; Cai, Baochang

2012-12-01

A method is described using rapid and sensitive Fourier transform near-infrared spectroscopy combined with high-performance liquid chromatography-diode array detection for the simultaneous identification and determination of four bioactive compounds in crude Radix Scrophulariae samples. Partial least squares regression is selected as the analysis type and multiplicative scatter correction, second derivative, and Savitzky-Golay filter were adopted for the spectral pretreatment. The correlation coefficients (R) of the calibration models were above 0.96 and the root mean square error of predictions were under 0.028. The developed models were applied to unknown samples with satisfactory results. The established method was validated and can be applied to the intrinsic quality control of crude Radix Scrophulariae.

HTM Spatial Pooler With Memristor Crossbar Circuits for Sparse Biometric Recognition.

PubMed

James, Alex Pappachen; Fedorova, Irina; Ibrayev, Timur; Kudithipudi, Dhireesha

2017-06-01

Hierarchical Temporal Memory (HTM) is an online machine learning algorithm that emulates the neo-cortex. The development of a scalable on-chip HTM architecture is an open research area. The two core substructures of HTM are spatial pooler and temporal memory. In this work, we propose a new Spatial Pooler circuit design with parallel memristive crossbar arrays for the 2D columns. The proposed design was validated on two different benchmark datasets, face recognition, and speech recognition. The circuits are simulated and analyzed using a practical memristor device model and 0.18 μm IBM CMOS technology model. The databases AR, YALE, ORL, and UFI, are used to test the performance of the design in face recognition. TIMIT dataset is used for the speech recognition.

Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array.

PubMed

van Geest, Geert; Voorrips, Roeland E; Esselink, Danny; Post, Aike; Visser, Richard Gf; Arens, Paul

2017-08-07

Cultivated chrysanthemum is an outcrossing hexaploid (2n = 6× = 54) with a disputed mode of inheritance. In this paper, we present a single nucleotide polymorphism (SNP) selection pipeline that was used to design an Affymetrix Axiom array with 183 k SNPs from RNA sequencing data (1). With this array, we genotyped four bi-parental populations (with sizes of 405, 53, 76 and 37 offspring plants respectively), and a cultivar panel of 63 genotypes. Further, we present a method for dosage scoring in hexaploids from signal intensities of the array based on mixture models (2) and validation of selection steps in the SNP selection pipeline (3). The resulting genotypic data is used to draw conclusions on the mode of inheritance in chrysanthemum (4), and to make an inference on allelic expression bias (5). With use of the mixture model approach, we successfully called the dosage of 73,936 out of 183,130 SNPs (40.4%) that segregated in any of the bi-parental populations. To investigate the mode of inheritance, we analysed markers that segregated in the large bi-parental population (n = 405). Analysis of segregation of duplex x nulliplex SNPs resulted in evidence for genome-wide hexasomic inheritance. This evidence was substantiated by the absence of strong linkage between markers in repulsion, which indicated absence of full disomic inheritance. We present the success rate of SNP discovery out of RNA sequencing data as affected by different selection steps, among which SNP coverage over genotypes and use of different types of sequence read mapping software. Genomic dosage highly correlated with relative allele coverage from the RNA sequencing data, indicating that most alleles are expressed according to their genomic dosage. The large population, genotyped with a very large number of markers, is a unique framework for extensive genetic analyses in hexaploid chrysanthemum. As starting point, we show conclusive evidence for genome-wide hexasomic inheritance.

Enhanced oxygen permeability in membrane-bottomed concave microwells for the formation of pancreatic islet spheroids.

PubMed

Lee, GeonHui; Jun, Yesl; Jang, HeeYeong; Yoon, Junghyo; Lee, JaeSeo; Hong, MinHyung; Chung, Seok; Kim, Dong-Hwee; Lee, SangHoon

2018-01-01

Oxygen availability is a critical factor in regulating cell viability that ultimately contributes to the normal morphogenesis and functionality of human tissues. Among various cell culture platforms, construction of 3D multicellular spheroids based on microwell arrays has been extensively applied to reconstitute in vitro human tissue models due to its precise control of tissue culture conditions as well as simple fabrication processes. However, an adequate supply of oxygen into the spheroidal cellular aggregation still remains one of the main challenges to producing healthy in vitro spheroidal tissue models. Here, we present a novel design for controlling the oxygen distribution in concave microwell arrays. We show that oxygen permeability into the microwell is tightly regulated by varying the poly-dimethylsiloxane (PDMS) bottom thickness of the concave microwells. Moreover, we validate the enhanced performance of the engineered microwell arrays by culturing non-proliferated primary rat pancreatic islet spheroids on varying bottom thickness from 10 μm to 1050 μm. Morphological and functional analyses performed on the pancreatic islet spheroids grown for 14 days prove the long-term stability, enhanced viability, and increased hormone secretion under the sufficient oxygen delivery conditions. We expect our results could provide knowledge on oxygen distribution in 3-dimensional spheroidal cell structures and critical design concept for tissue engineering applications. In this study, we present a noble design to control the oxygen distribution in concave microwell arrays for the formation of highly functional pancreatic islet spheroids by engineering the bottom of the microwells. Our new platform significantly enhanced oxygen permeability that turned out to improve cell viability and spheroidal functionality compared to the conventional thick-bottomed 3-D culture system. Therefore, we believe that this could be a promising medical biotechnology platform to further develop high-throughput tissue screening system as well as in vivo-mimicking customised 3-D tissue culture systems. Copyright © 2017 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Studies Of Infrasonic Propagation Using Dense Seismic Networks

NASA Astrophysics Data System (ADS)

Hedlin, M. A.; deGroot-Hedlin, C. D.; Drob, D. P.

2011-12-01

Although there are approximately 100 infrasonic arrays worldwide, more than ever before, the station density is still insufficient to provide validation for detailed propagation modeling. Relatively large infrasonic signals can be observed on seismic channels due to coupling at the Earth's surface. Recent research, using data from the 70-km spaced 400-station USArray and other seismic network deployments, has shown the value of dense seismic network data for filling in the gaps between infrasonic arrays. The dense sampling of the infrasonic wavefield has allowed us to observe complete travel-time branches of infrasound and address important research problems in infrasonic propagation. We present our analysis of infrasound created by a series of rocket motor detonations that occurred at the UTTR facility in Utah in 2007. These data were well recorded by the USArray seismometers. We use the precisely located blasts to assess the utility of G2S mesoscale models and methods to synthesize infrasonic propagation. We model the travel times of the branches using a ray-based approach and the complete wavefield using a FDTD algorithm. Although results from both rays and FDTD approaches predict the travel times to within several seconds, only about 40% of signals are predicted using rays largely due to penetration of sound into shadow zones. FDTD predicts some sound penetration into the shadow zone, but the observed shadow zones, as defined by the seismic data, have considerably narrower spatial extent than either method predicts, perhaps due to un-modeled small-scale structure in the atmosphere.

Self-bending elastic waves and obstacle circumventing in wireless power transfer

NASA Astrophysics Data System (ADS)

Tol, S.; Xia, Y.; Ruzzene, M.; Erturk, A.

2017-04-01

We demonstrate self-bending of elastic waves along convex trajectories by means of geometric and phased arrays. Potential applications include ultrasonic imaging and manipulation, wave focusing, and wireless power transfer around obstacles. The basic concept is illustrated through a geometric array, which is designed to implement a phase delay profile among the array elements that leads to self-bending along a specified circular trajectory. Experimental validation is conducted for the lowest asymmetric Lamb wave mode in a thin plate over a range of frequencies to investigate the bandwidth of the approach. Experiments also illustrate the functionality of the array as a transmitter to deliver elastic wave energy to a receiver/harvester located behind a large obstacle for electrical power extraction. It is shown that the trajectory is not distorted by the presence of the obstacle and circumventing is achieved. A linear phased array counterpart of the geometric array is then constructed to illustrate the concept by imposing proper time delays to the array elements, which allows the generation of different trajectories using the same line source. This capability is demonstrated by tailoring the path diameter in the phased array setting, which offers the flexibility and versatility to induce a variety of convex trajectories for self-bending elastic waves.

Discovery and Validation of Novel Expression Signature for Postcystectomy Recurrence in High-Risk Bladder Cancer

PubMed Central

Lam, Lucia L.; Ghadessi, Mercedeh; Erho, Nicholas; Vergara, Ismael A.; Alshalalfa, Mohammed; Buerki, Christine; Haddad, Zaid; Sierocinski, Thomas; Triche, Timothy J.; Skinner, Eila C.; Davicioni, Elai; Daneshmand, Siamak; Black, Peter C.

2014-01-01

Background Nearly half of muscle-invasive bladder cancer patients succumb to their disease following cystectomy. Selecting candidates for adjuvant therapy is currently based on clinical parameters with limited predictive power. This study aimed to develop and validate genomic-based signatures that can better identify patients at risk for recurrence than clinical models alone. Methods Transcriptome-wide expression profiles were generated using 1.4 million feature-arrays on archival tumors from 225 patients who underwent radical cystectomy and had muscle-invasive and/or node-positive bladder cancer. Genomic (GC) and clinical (CC) classifiers for predicting recurrence were developed on a discovery set (n = 133). Performances of GC, CC, an independent clinical nomogram (IBCNC), and genomic-clinicopathologic classifiers (G-CC, G-IBCNC) were assessed in the discovery and independent validation (n = 66) sets. GC was further validated on four external datasets (n = 341). Discrimination and prognostic abilities of classifiers were compared using area under receiver-operating characteristic curves (AUCs). All statistical tests were two-sided. Results A 15-feature GC was developed on the discovery set with area under curve (AUC) of 0.77 in the validation set. This was higher than individual clinical variables, IBCNC (AUC = 0.73), and comparable to CC (AUC = 0.78). Performance was improved upon combining GC with clinical nomograms (G-IBCNC, AUC = 0.82; G-CC, AUC = 0.86). G-CC high-risk patients had elevated recurrence probabilities (P < .001), with GC being the best predictor by multivariable analysis (P = .005). Genomic-clinicopathologic classifiers outperformed clinical nomograms by decision curve and reclassification analyses. GC performed the best in validation compared with seven prior signatures. GC markers remained prognostic across four independent datasets. Conclusions The validated genomic-based classifiers outperform clinical models for predicting postcystectomy bladder cancer recurrence. This may be used to better identify patients who need more aggressive management. PMID:25344601

Design and validation of a large-format transition edge sensor array magnetic shielding system for space application

NASA Astrophysics Data System (ADS)

Bergen, A.; van Weers, H. J.; Bruineman, C.; Dhallé, M. M. J.; Krooshoop, H. J. G.; ter Brake, H. J. M.; Ravensberg, K.; Jackson, B. D.; Wafelbakker, C. K.

2016-10-01

The paper describes the development and the experimental validation of a cryogenic magnetic shielding system for transition edge sensor based space detector arrays. The system consists of an outer mu-metal shield and an inner superconducting niobium shield. First, a basic comparison is made between thin-walled mu-metal and superconducting shields, giving an off-axis expression for the field inside a cup-shaped superconductor as a function of the transverse external field. Starting from these preliminary analytical considerations, the design of an adequate and realistic shielding configuration for future space flight applications (either X-IFU [D. Barret et al., e-print arXiv:1308.6784 [astro-ph.IM] (2013)] or SAFARI [B. Jackson et al., IEEE Trans. Terahertz Sci. Technol. 2, 12 (2012)]) is described in more detail. The numerical design and verification tools (static and dynamic finite element method (FEM) models) are discussed together with their required input, i.e., the magnetic-field dependent permeability data. Next, the actual manufacturing of the shields is described, including a method to create a superconducting joint between the two superconducting shield elements that avoid flux penetration through the seam. The final part of the paper presents the experimental verification of the model predictions and the validation of the shield's performance. The shields were cooled through the superconducting transition temperature of niobium in zero applied magnetic field (<10 nT) or in a DC field with magnitude ˜100 μT, applied either along the system's symmetry axis or perpendicular to it. After cool-down, DC trapped flux profiles were measured along the shield axis with a flux-gate magnetometer and the attenuation of externally applied AC fields (100 μT, 0.1 Hz, both axial and transverse) was verified along this axis with superconducting quantum interference device magnetometers. The system's measured on-axis shielding factor is greater than 106, well exceeding the requirement of the envisaged missions. Following field-cooling in an axial field of 85 μT, the residual internal DC field normal to the detector plane is less than 1 μT. The trapped field patterns are compared to the predictions of the dynamic FEM model, which describes them well in the region where the internal field exceeds 6 μT.

Design and validation of a large-format transition edge sensor array magnetic shielding system for space application.

PubMed

Bergen, A; van Weers, H J; Bruineman, C; Dhallé, M M J; Krooshoop, H J G; Ter Brake, H J M; Ravensberg, K; Jackson, B D; Wafelbakker, C K

2016-10-01

The paper describes the development and the experimental validation of a cryogenic magnetic shielding system for transition edge sensor based space detector arrays. The system consists of an outer mu-metal shield and an inner superconducting niobium shield. First, a basic comparison is made between thin-walled mu-metal and superconducting shields, giving an off-axis expression for the field inside a cup-shaped superconductor as a function of the transverse external field. Starting from these preliminary analytical considerations, the design of an adequate and realistic shielding configuration for future space flight applications (either X-IFU [D. Barret et al., e-print arXiv:1308.6784 [astro-ph.IM] (2013)] or SAFARI [B. Jackson et al., IEEE Trans. Terahertz Sci. Technol. 2, 12 (2012)]) is described in more detail. The numerical design and verification tools (static and dynamic finite element method (FEM) models) are discussed together with their required input, i.e., the magnetic-field dependent permeability data. Next, the actual manufacturing of the shields is described, including a method to create a superconducting joint between the two superconducting shield elements that avoid flux penetration through the seam. The final part of the paper presents the experimental verification of the model predictions and the validation of the shield's performance. The shields were cooled through the superconducting transition temperature of niobium in zero applied magnetic field (<10 nT) or in a DC field with magnitude ∼100 μT, applied either along the system's symmetry axis or perpendicular to it. After cool-down, DC trapped flux profiles were measured along the shield axis with a flux-gate magnetometer and the attenuation of externally applied AC fields (100 μT, 0.1 Hz, both axial and transverse) was verified along this axis with superconducting quantum interference device magnetometers. The system's measured on-axis shielding factor is greater than 10 6 , well exceeding the requirement of the envisaged missions. Following field-cooling in an axial field of 85 μT, the residual internal DC field normal to the detector plane is less than 1 μT. The trapped field patterns are compared to the predictions of the dynamic FEM model, which describes them well in the region where the internal field exceeds 6 μT.

The Construct and Predictive Validity of a Dynamic Assessment of Young Children Learning to Read: Implications for RTI Frameworks

ERIC Educational Resources Information Center

Fuchs, Douglas; Compton, Donald L.; Fuchs, Lynn S.; Bouton, Bobette; Caffrey, Erin

2011-01-01

The purpose of this study was to examine the construct and predictive validity of a dynamic assessment (DA) of decoding learning. Students (N = 318) were assessed in the fall of first grade on an array of instruments that were given in hopes of forecasting responsiveness to reading instruction. These instruments included DA as well as…

Investigation of multichannel phased array performance for fetal MR imaging on 1.5T clinical MR system

PubMed Central

Li, Ye; Pang, Yong; Vigneron, Daniel; Glenn, Orit; Xu, Duan; Zhang, Xiaoliang

2011-01-01

Fetal MRI on 1.5T clinical scanner has been increasingly becoming a powerful imaging tool for studying fetal brain abnormalities in vivo. Due to limited availability of dedicated fetal phased arrays, commercial torso or cardiac phased arrays are routinely used for fetal scans, which are unable to provide optimized SNR and parallel imaging performance with a small number coil elements, and insufficient coverage and filling factor. This poses a demand for the investigation and development of dedicated and efficient radiofrequency (RF) hardware to improve fetal imaging. In this work, an investigational approach to simulate the performance of multichannel flexible phased arrays is proposed to find a better solution to fetal MR imaging. A 32 channel fetal array is presented to increase coil sensitivity, coverage and parallel imaging performance. The electromagnetic field distribution of each element of the fetal array is numerically simulated by using finite-difference time-domain (FDTD) method. The array performance, including B1 coverage, parallel reconstructed images and artifact power, is then theoretically calculated and compared with the torso array. Study results show that the proposed array is capable of increasing B1 field strength as well as sensitivity homogeneity in the entire area of uterus. This would ensure high quality imaging regardless of the location of the fetus in the uterus. In addition, the paralleling imaging performance of the proposed fetal array is validated by using artifact power comparison with torso array. These results demonstrate the feasibility of the 32 channel flexible array for fetal MR imaging at 1.5T. PMID:22408747

Customizable PCR-microplate array for differential identification of multiple pathogens

PubMed Central

Woubit, Abdela; Yehualaeshet, Teshome; Roberts, Sherrelle; Graham, Martha; Kim, Moonil; Samuel, Temesgen

2014-01-01

Customizable PCR-microplate arrays were developed for the rapid identification of Francisella tularensis subsp. tularensis, Salmonella Typhi, Shigella dysenteriae, Yersinia pestis, Vibrio cholerae Escherichia coli O157:H7, Salmonella Typhimurium, Salmonella Saintpaul, Francisella tularensis subsp. novicida, Vibrio parahaemolyticus, and Yersinia pseudotuberculosis. Previously, we identified highly specific primers targeting each of the pathogens above. Here, we report the development of customizable PCR-microplate arrays for simultaneous identification of the pathogens using the primers. A mixed aliquot of genomic DNA from 38 different strains was used to validate three PCR-microplate array formats. Identical PCR conditions were used to run all the samples on the three formats. Results show specific amplifications on all the three custom plates. In a preliminary test to evaluate the sensitivity of these assays in laboratory-inoculated samples, detection limits as low as 9 cfu/g/ml S. Typhimurium were obtained from beef hot dog, and 78 cfu/ml from milk. Such microplate arrays could serve as valuable tools for initial identification or secondary confirmation of these pathogens. PMID:24215700

Inkjet-assisted layer-by-layer printing of quantum dot/enzyme microarrays for highly sensitive detection of organophosphorous pesticides.

PubMed

Luan, Enxiao; Zheng, Zhaozhu; Li, Xinyu; Gu, Hongxi; Liu, Shaoqin

2016-04-15

We present a facile fabrication of layer-by-layer (LbL) microarrays of quantum dots (QDs) and acetylcholinesterase enzyme (AChE). The resulting arrays had several unique properties, such as low cost, high integration and excellent flexibility and time-saving. The presence of organophosphorous pesticides (OPs) can inhibit the AChE activity and thus changes the fluorescent intensity of QDs/AChE microscopic dot arrays. Therefore, the QDs/AChE microscopic dot arrays were used for the sensitive visual detection of OPs. Linear calibration for parathion and paraoxon was obtained in the range of 5-100 μg L(-1) under the optimized conditions with the limit of detection (LOD) of 10 μg L(-1). The arrays have been successfully used for detection of OPs in fruits and water real samples. The new array was validated by comparison with conventional high performance liquid chromatography-mass spectrometry (HPLC-MS). Copyright © 2016 Elsevier B.V. All rights reserved.

The Use of a Mesoscale Climate Model to Validate the Nocturnal Carbon Flux over a Forested Site

NASA Astrophysics Data System (ADS)

Werth, D.; Parker, M.; Kurzeja, R.; Leclerc, M.; Watson, T.

2007-12-01

The Savannah River National Laboratory is initiating a comprehensive carbon dioxide monitoring and modeling program in collaboration with the University of Georgia and the Brookhaven National Laboratory. One of the primary goals is to study the dynamics of carbon dioxide in the stable nocturnal boundary layer (NBL) over a forested area of the Savannah River Site in southwest South Carolina. In the nocturnal boundary layer (NBL), eddy flux correlation is less effective in determining the release of CO2 due to respiration. Theoretically, however, the flux can be inferred by measuring the build up of CO2 in the stable layer throughout the night. This method of monitoring the flux will be validated and studied in more detail with both observations and the results of a high-resolution regional climate model. The experiment will involve two phases. First, an artificial tracer will be released into the forest boundary layer and observed through an array of sensors and at a flux tower. The event will be simulated with the RAMS climate model run at very high resolution. Ideally, the tracer will remain trapped within the stable layer and accumulate at rates which will allow us to infer the release rate, and this should compare well to the actual release rate. If an unknown mechanism allows the tracer to escape, the model simulation would be used to reveal it. In the second phase, carbon fluxes will be measured overnight through accumulation in the overlying layer. The RAMS model will be coupled with the SiB carbon model to simulate the nocturnal cycle of carbon dynamics, and this will be compared to the data collected during the night. As with the tracer study, the NBL method of flux measurement will be validated against the model. The RAMS-SiB coupled model has been run over the SRS at high-resolution to simulate the NBL, and results from simulations of both phases of the project will be presented.

What's wrong with my mouse cage? Methodological considerations for modeling lifestyle factors and gene-environment interactions in mice.

PubMed

Mo, Christina; Renoir, Thibault; Hannan, Anthony J

2016-05-30

The mechanistic understanding of lifestyle contributions to disease has been largely driven by work in laboratory rodent models using environmental interventions. These interventions show an array of methodologies and sometimes unclear collective conclusions, hampering clinical interpretations. Here we discuss environmental enrichment, exercise and stress interventions to illustrate how different protocols can affect the interpretations of environmental factors in disease. We use Huntington's disease (HD) as an example because its mouse models exhibit excellent validity and HD was the first genetic animal model in which environmental stimulation was found to be beneficial. We make a number of observations and recommendations. Firstly, environmental enrichment and voluntary exercise generally show benefits across laboratories and mouse models. However, the extent to which these environmental interventions have beneficial effects depends on parameters such as the structural complexity of the cage in the case of enrichment, the timing of the intervention and the nature of the control conditions. In particular, clinical interpretations should consider deprived control living conditions and the ethological relevance of the enrichment. Secondly, stress can have negative effects on the phenotype in mouse models of HD and other brain disorders. When modeling stress, the effects of more than one type of experimental stressor should be investigated due to the heterogeneity and complexity of stress responses. With stress in particular, but ideally in all studies, both sexes should be used and the randomized group sizes need to be sufficiently powered to detect any sex effects. Opportunities for clinical translation will be guided by the 'environmental construct validity' of the preclinical data, including the culmination of complementary protocols across multiple animal models. Environmental interventions in mouse models of HD provide illustrative examples of how valid preclinical studies can lead to conclusions relevant to clinical populations. Copyright © 2015 Elsevier B.V. All rights reserved.

The New Millennium Program: Validating Advanced Technologies for Future Space Missions

NASA Technical Reports Server (NTRS)

Minning, Charles P.; Luers, Philip

1999-01-01

This presentation reviews the activities of the New Millennium Program (NMP) in validating advanced technologies for space missions. The focus of these breakthrough technologies are to enable new capabilities to fulfill the science needs, while reducing costs of future missions. There is a broad spectrum of NMP partners, including government agencies, universities and private industry. The DS-1 was launched on October 24, 1998. Amongst the technologies validated by the NMP on DS-1 are: a Low Power Electronics Experiment, the Power Activation and Switching Module, Multi-Functional Structures. The first two of these technologies are operational and the data analysis is still ongoing. The third program is also operational, and its performance parameters have been verified. The second program, DS-2, was launched January 3 1999. It is expected to impact near Mars southern polar region on 3 December 1999. The technologies used on this mission awaiting validation are an advanced microcontroller, a power microelectronics unit, an evolved water experiment and soil thermal conductivity experiment, Lithium-Thionyl Chloride batteries, the flexible cable interconnect, aeroshell/entry system, and a compact telecom system. EO-1 on schedule for launch in December 1999 carries several technologies to be validated. Amongst these are: a Carbon-Carbon Radiator, an X-band Phased Array Antenna, a pulsed plasma thruster, a wideband advanced recorder processor, an atmospheric corrector, lightweight flexible solar arrays, Advanced Land Imager and the Hyperion instrument

Equivalent circuit-based analysis of CMUT cell dynamics in arrays.

PubMed

Oguz, H K; Atalar, Abdullah; Köymen, Hayrettin

2013-05-01

Capacitive micromachined ultrasonic transducers (CMUTs) are usually composed of large arrays of closely packed cells. In this work, we use an equivalent circuit model to analyze CMUT arrays with multiple cells. We study the effects of mutual acoustic interactions through the immersion medium caused by the pressure field generated by each cell acting upon the others. To do this, all the cells in the array are coupled through a radiation impedance matrix at their acoustic terminals. An accurate approximation for the mutual radiation impedance is defined between two circular cells, which can be used in large arrays to reduce computational complexity. Hence, a performance analysis of CMUT arrays can be accurately done with a circuit simulator. By using the proposed model, one can very rapidly obtain the linear frequency and nonlinear transient responses of arrays with an arbitrary number of CMUT cells. We performed several finite element method (FEM) simulations for arrays with small numbers of cells and showed that the results are very similar to those obtained by the equivalent circuit model.

Studies of infrasound propagation using the USArray seismic network (Invited)

NASA Astrophysics Data System (ADS)

Hedlin, M. A.; Degroot-Hedlin, C. D.; Walker, K. T.

2010-12-01

Although there are currently ~ 100 infrasound arrays worldwide, more than ever before, the station density is still insufficient to provide validation for detailed propagation modeling. Much structure in the atmosphere is short-lived and occurs at spatial scales much smaller than the average distance between infrasound stations. Relatively large infrasound signals can be observed on seismic channels due to coupling at the Earth's surface. Recent research, using data from the 70-km spaced 400-station USArray and other seismic network deployments, has shown the value of dense seismic network data for filling in the gaps between infrasound arrays. The dense sampling of the infrasound wavefield has allowed us to observe complete travel-time branches of infrasound signals and shed more light on the nature of infrasound propagation. We present early results from our studies of impulsive atmospheric sources, such as series of UTTR rocket motor detonations in Utah. The Utah blasts have been well recorded by USArray seismic stations and infrasound arrays in Nevada and Washington State. Recordings of seismic signals from a series of six events in 2007 are used to pinpoint the shot times to < 1 second. Variations in the acoustic branches and signal arrival times at the arrays are used to probe variations in atmospheric structure. Although we currently use coupled signals we anticipate studying dense acoustic network recordings as the USArray is currently being upgraded with infrasound microphones. These new sensors will allow us to make semi-continental scale network recordings of infrasound signals free of concerns about how the signals observed on seismic channels were modified when being coupled to seismic.

Aptamer-based microfluidic beads array sensor for simultaneous detection of multiple analytes employing multienzyme-linked nanoparticle amplification and quantum dots labels.

PubMed

Zhang, He; Hu, Xinjiang; Fu, Xin

2014-07-15

This study reports the development of an aptamer-mediated microfluidic beads-based sensor for multiple analytes detection and quantification using multienzyme-linked nanoparticle amplification and quantum dots labels. Adenosine and cocaine were selected as the model analytes to validate the assay design based on strand displacement induced by target-aptamer complex. Microbeads functionalized with the aptamers and modified electron rich proteins were arrayed within a microfluidic channel and were connected with the horseradish peroxidases (HRP) and capture DNA probe derivative gold nanoparticles (AuNPs) via hybridization. The conformational transition of aptamer induced by target-aptamer complex contributes to the displacement of functionalized AuNPs and decreases the fluorescence signal of microbeads. In this approach, increased binding events of HRP on each nanosphere and enhanced mass transport capability inherent from microfluidics are integrated for enhancing the detection sensitivity of analytes. Based on the dual signal amplification strategy, the developed aptamer-based microfluidic bead array sensor could discriminate as low as 0.1 pM of adenosine and 0.5 pM cocaine, and showed a 500-fold increase in detection limit of adenosine compared to the off-chip test. The results proved the microfluidic-based method was a rapid and efficient system for aptamer-based targets assays (adenosine (0.1 pM) and cocaine (0.5 pM)), requiring only minimal (microliter) reagent use. This work demonstrated the successful application of aptamer-based microfluidic beads array sensor for detection of important molecules in biomedical fields. Copyright © 2014 Elsevier B.V. All rights reserved.

Instrument Correction and Dynamic Site Profile Validation at the Central United States Seismic Observatory, New Madrid Seismic Zone

NASA Astrophysics Data System (ADS)

Brengman, C.; Woolery, E. W.; Wang, Z.; Carpenter, S.

2016-12-01

The Central United States Seismic Observatory (CUSSO) is a vertical seismic array located in southwestern Kentucky within the New Madrid seismic zone. It is intended to describe the effects of local geology, including thick sediment overburden, on seismic-wave propagation, particularly strong-motion. The three-borehole array at CUSSO is composed of seismic sensors placed on the surface, and in the bedrock at various depths within the 585 m thick sediment overburden. The array's deep borehole provided a unique opportunity in the northern Mississippi embayment for the direct geological description and geophysical measurement of the complete late Cretaceous-Quaternary sediment column. A seven layer, intra-sediment velocity model is interpreted from the complex, inhomogeneous stratigraphy. The S- and P-wave sediment velocities range between 160 and 875 m/s and between 1000 and 2300 m/s, respectively, with bedrock velocities of 1452 and 3775 m/s, respectively. Cross-correlation and direct comparisons were used to filter out the instrument response and determine the instrument orientation, making CUSSO data ready for analysis, and making CUSSO a viable calibration site for other free-field sensors in the area. The corrected bedrock motions were numerically propagated through the CUSSO soil profile (transfer function) and compared, in terms of both peak acceleration and amplitude spectra, to the recorded surface observations. Initial observations reveal a complex spectral mix of amplification and de-amplification across the array, indicating the site effect in this deep sediment setting is not simply generated by the shallowest layers.

Array microscopy technology and its application to digital detection of Mycobacterium tuberculosis

NASA Astrophysics Data System (ADS)

McCall, Brian P.

Tuberculosis causes more deaths worldwide than any other curable infectious disease. This is the case despite tuberculosis appearing to be on the verge of eradication midway through the last century. Efforts at reversing the spread of tuberculosis have intensified since the early 1990s. Since then, microscopy has been the primary frontline diagnostic. In this dissertation, advances in clinical microscopy towards array microscopy for digital detection of Mycobacterium tuberculosis are presented. Digital array microscopy separates the tasks of microscope operation and pathogen detection and will reduce the specialization needed in order to operate the microscope. Distributing the work and reducing specialization will allow this technology to be deployed at the point of care, taking the front-line diagnostic for tuberculosis from the microscopy center to the community health center. By improving access to microscopy centers, hundreds of thousands of lives can be saved. For this dissertation, a lens was designed that can be manufactured as 4x6 array of microscopes. This lens design is diffraction limited, having less than 0.071 waves of aberration (root mean square) over the entire field of view. A total area imaged onto a full-frame digital image sensor is expected to be 3.94 mm2, which according to tuberculosis microscopy guidelines is more than sufficient for a sensitive diagnosis. The design is tolerant to single point diamond turning manufacturing errors, as found by tolerance analysis and by fabricating a prototype. Diamond micro-milling, a fabrication technique for lens array molds, was applied to plastic plano-concave and plano-convex lens arrays, and found to produce high quality optical surfaces. The micro-milling technique did not prove robust enough to produce bi-convex and meniscus lens arrays in a variety of lens shapes, however, and it required lengthy fabrication times. In order to rapidly prototype new lenses, a new diamond machining technique was developed called 4-axis single point diamond machining. This technique is 2-10x faster than micro-milling, depending on how advanced the micro-milling equipment is. With array microscope fabrication still in development, a single prototype of the lens designed for an array microscope was fabricated using single point diamond turning. The prototype microscope objective was validated in a pre-clinical trial. The prototype was compared with a standard clinical microscope objective in diagnostic tests. High concordance, a Fleiss's kappa of 0.88, was found between diagnoses made using the prototype and standard microscope objectives and a reference test. With the lens designed and validated and an advanced fabrication process developed, array microscopy technology is advanced to the point where it is feasible to rapidly prototype an array microscope for detection of tuberculosis and translate array microscope from an innovative concept to a device that can save lives.

Networked localization of sniper shots using acoustics

NASA Astrophysics Data System (ADS)

Hengy, S.; Hamery, P.; De Mezzo, S.; Duffner, P.

2011-06-01

The presence of snipers in modern conflicts leads to high insecurity for the soldiers. In order to improve the soldier's protection against this threat, the French German Research Institute of Saint-Louis (ISL) initiated studies in the domain of acoustic localization of shots. Mobile antennas mounted on the soldier's helmet were initially used for real-time detection, classification and localization of sniper shots. It showed good performances in land scenarios, but also in urban scenarios if the array was in the shot corridor, meaning that the microphones first detect the direct wave and then the reflections of the Mach and muzzle waves. As soon as the acoustic arrays were not near to the shot corridor (only reflections are detected) this solution lost its efficiency and erroneous estimated position were given. In order to estimate the position of the shooter in every kind of urban scenario, ISL started studying time reversal techniques. Knowing the position of every reflective object in the environment (buildings, walls, ...) it should be possible to estimate the position of the shooter. First, a synthetic propagation algorithm has been developed and validated for real scale applications. It has then been validated for small scale models, allowing us to test our time reversal based algorithms in our laboratory. In this paper we discuss all the challenges that are induced by the application of sniper detection using time reversal techniques. We will discuss all the hard points that can be encountered and try to find some solutions in order to optimize the use of this technique.

Sao Paulo Lightning Mapping Array (SP-LMA): Network Assessment and Analyses for Intercomparison Studies and GOES-R Proxy Activities

NASA Technical Reports Server (NTRS)

Blakeslee, R. J.; Bailey, J. C.; Carey, L. D.; Goodman, S. J.; Rudlosky, S. D.; Albrecht, R.; Morales, C. A.; Anselmo, E. M.; Neves, J. R.

2013-01-01

A 12 station Lightning Mapping Array (LMA) network was deployed during October 2011in the vicinity of São Paulo, Brazil (SP-LMA) to contribute total lightning measurements to an international field campaign [CHUVA - Cloud processes of tHe main precipitation systems in Brazil: A contribUtion to cloud resolVing modeling and to the GPM (GlobAl Precipitation Measurement)]. The SP-LMA was operational from November 2011 through March 2012. Sensor spacing was on the order of 15-30 km, with a network diameter on the order of 40-50km. The SP-LMA provides good 3-D lightning mapping out to150 km from the network center, with 2-D coverage considerably farther. In addition to supporting CHUVA science/mission objectives, the SP-LMA is supporting the generation of unique proxy data for the Geostationary Lightning Mapper (GLM) and Advanced Baseline Imager (ABI), on NOAA's Geostationary Operational Environmental Satellite-R (GOES-R: scheduled for a 2015 launch). These proxy data will be used to develop and validate operational algorithms so that they will be ready to use on "day1" following the GOES-R launch. The SP-LMA data also will be intercompared with lightning observations from other deployed lightning networks to advance our understanding of the capabilities/contributions of each of these networks toward GLM proxy and validation activities. This paper addresses the network assessment and analyses for intercomparison studies and GOES-R proxy activities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roberts, Jesse D.; Chang, Grace; Jones, Craig

The numerical model, SWAN (Simulating WAves Nearshore) , was used to simulate wave conditions in Kaneohe Bay, HI in order to determine the effects of wave energy converter ( WEC ) devices on the propagation of waves into shore. A nested SWAN model was validated then used to evaluate a range of initial wave conditions: significant wave heights (H s ) , peak periods (T p ) , and mean wave directions ( MWD) . Differences between wave height s in the presence and absence of WEC device s were assessed at locations in shore of the WEC array. Themore » maximum decrease in wave height due to the WEC s was predicted to be approximately 6% at 5 m and 10 m water depths. Th is occurred for model initiation parameters of H s = 3 m (for 5 m water depth) or 4 m (10 m water depth) , T p = 10 s, and MWD = 330deg . Subsequently, bottom orbital velocities were found to decrease by about 6%.« less

A model of rotationally-sampled wind turbulence for predicting fatigue loads in wind turbines

NASA Technical Reports Server (NTRS)

Spera, David A.

1995-01-01

Empirical equations are presented with which to model rotationally-sampled (R-S) turbulence for input to structural-dynamic computer codes and the calculation of wind turbine fatigue loads. These equations are derived from R-S turbulence data which were measured at the vertical-plane array in Clayton, New Mexico. For validation, the equations are applied to the calculation of cyclic flapwise blade loads for the NASA/DOE Mod-2 2.5-MW experimental HAWT's (horizontal-axis wind turbines), and the results compared to measured cyclic loads. Good correlation is achieved, indicating that the R-S turbulence model developed in this study contains the characteristics of the wind which produce many of the fatigue loads sustained by wind turbines. Empirical factors are included which permit the prediction of load levels at specified percentiles of occurrence, which is required for the generation of fatigue load spectra and the prediction of the fatigue lifetime of structures.

Spacecraft Charging Current Balance Model Applied to High Voltage Solar Array Operations

NASA Technical Reports Server (NTRS)

Willis, Emily M.; Pour, Maria Z. A.

2016-01-01

Spacecraft charging induced by high voltage solar arrays can result in power losses and degradation of spacecraft surfaces. In some cases, it can even present safety issues for astronauts performing extravehicular activities. An understanding of the dominant processes contributing to spacecraft charging induced by solar arrays is important to current space missions, such as the International Space Station, and to any future space missions that may employ high voltage solar arrays. A common method of analyzing the factors contributing to spacecraft charging is the current balance model. Current balance models are based on the simple idea that the spacecraft will float to a potential such that the current collecting to the surfaces equals the current lost from the surfaces. However, when solar arrays are involved, these currents are dependent on so many factors that the equation becomes quite complicated. In order for a current balance model to be applied to solar array operations, it must incorporate the time dependent nature of the charging of dielectric surfaces in the vicinity of conductors1-3. This poster will present the factors which must be considered when developing a current balance model for high voltage solar array operations and will compare results of a current balance model with data from the Floating Potential Measurement Unit4 on board the International Space Station.

Genetically engineered mice as experimental tools to dissect the critical events in breast cancer.

PubMed

Menezes, Mitchell E; Das, Swadesh K; Emdad, Luni; Windle, Jolene J; Wang, Xiang-Yang; Sarkar, Devanand; Fisher, Paul B

2014-01-01

Elucidating the mechanism of pathogenesis of breast cancer has greatly benefited from breakthrough advances in both genetically engineered mouse (GEM) models and xenograft transplantation technologies. The vast array of breast cancer mouse models currently available is testimony to the complexity of mammary tumorigenesis and attempts by investigators to accurately portray the heterogeneity and intricacies of this disease. Distinct molecular changes that drive various aspects of tumorigenesis, such as alterations in tumor cell proliferation and apoptosis, invasion and metastasis, angiogenesis, and drug resistance have been evaluated using the currently available GEM breast cancer models. GEM breast cancer models are also being exploited to evaluate and validate the efficacy of novel therapeutics, vaccines, and imaging modalities for potential use in the clinic. This review provides a synopsis of the various GEM models that are expanding our knowledge of the nuances of breast cancer development and progression and can be instrumental in the development of novel prevention and therapeutic approaches for this disease. © 2014 Elsevier Inc. All rights reserved.

Genetically Engineered Mice as Experimental Tools to Dissect the Critical Events in Breast Cancer

PubMed Central

Menezes, Mitchell E.; Das, Swadesh K.; Emdad, Luni; Windle, Jolene J.; Wang, Xiang-Yang; Sarkar, Devanand; Fisher, Paul B.

2015-01-01

Elucidating the mechanism of pathogenesis of breast cancer has greatly benefited from breakthrough advances in both genetically engineered mouse (GEM) models and xenograft transplantation technologies. The vast array of breast cancer mouse models currently available is testimony to the complexity of mammary tumorigenesis and attempts by investigators to accurately portray the heterogeneity and intricacies of this disease. Distinct molecular changes that drive various aspects of tumorigenesis, such as alterations in tumor cell proliferation and apoptosis, invasion and metastasis, angiogenesis, and drug resistance have been evaluated using the currently available GEM breast cancer models. GEM breast cancer models are also being exploited to evaluate and validate the efficacy of novel therapeutics, vaccines, and imaging modalities for potential use in the clinic. This review provides a synopsis of the various GEM models that are expanding our knowledge of the nuances of breast cancer development and progression and can be instrumental in the development of novel prevention and therapeutic approaches for this disease. PMID:24889535

The influence of periodic wind turbine noise on infrasound array measurements

NASA Astrophysics Data System (ADS)

Pilger, Christoph; Ceranna, Lars

2017-02-01

Aerodynamic noise emissions from the continuously growing number of wind turbines in Germany are creating increasing problems for infrasound recording systems. These systems are equipped with highly sensitive micro pressure sensors accurately measuring acoustic signals in a frequency range inaudible to the human ear. Ten years of data (2006-2015) from the infrasound array IGADE in Northern Germany are analysed to quantify the influence of wind turbine noise on infrasound recordings. Furthermore, a theoretical model is derived and validated by a field experiment with mobile micro-barometer stations. Fieldwork was carried out 2004 to measure the infrasonic pressure level of a single horizontal-axis wind turbine and to extrapolate the sound effect for a larger number of nearby wind turbines. The model estimates the generated sound pressure level of wind turbines and thus enables for specifying the minimum allowable distance between wind turbines and infrasound stations for undisturbed recording. This aspect is particularly important to guarantee the monitoring performance of the German infrasound stations I26DE in the Bavarian Forest and I27DE in Antarctica. These stations are part of the International Monitoring System (IMS) verifying compliance with the Comprehensive Nuclear-Test-Ban Treaty (CTBT), and thus have to meet stringent specifications with respect to infrasonic background noise.

Intermediate-Mass Black Holes in Globular Cluster Systems

NASA Astrophysics Data System (ADS)

Wrobel, J. M.; Miller-Jones, J. C. A.; Nyland, K. E.; Maccarone, T. J.

2018-01-01

Theory suggests that globular clusters (GCs) of stars can host intermediate-mass black holes (IMBHs) with masses of about 100 to 100,000 solar masses. We invoke a semi-empirical model to predict the mass of an IMBH that, if undergoing accretion in the long-lived hard X-ray state, is consistent with the synchrotron radio luminosity of a GC. We apply this model to extant images from the Karl G. Jansky Very Large Array (VLA) and to simulated images from the Next Generation Very Large Array (ngVLA). Guided by our VLA results for M81's system of 206 probable GCs at a distance of 3.6 Mpc, we consider using the ngVLA to study the hundreds of globular cluster systems out to a distance of 25 Mpc. With its sensitivity, spatial resolution, and field of view, we conclude that the ngVLA at 2cm will efficiently probe IMBH masses for tens of thousands of GCs. Finding IMBHs in GCs could validate a formation channel for seed BHs in the early universe, underpin gravitational wave predictions for space missions, and test scaling relations between stellar systems and the central BHs they host. The NRAO is a facility of the NSF, operated under cooperative agreement by AUI, Inc.

Design and Fabrication Highlights Enabling a 2 mm, 128 Element Bolometer Array for GISMO

NASA Technical Reports Server (NTRS)

Allen, Christine; Benford, Dominic; Miller, Timothy; Staguhn, Johannes; Wollack, Edward; Moseley, Harvey

2007-01-01

The Backshort-Under-Grid (BUG) superconducting bolometer array architecture is intended to be highly versatile, operating in a large range of wavelengths and background conditions. We have undertaken a three-year program to develop key technologies and processes required to build kilopixel arrays. To validate the basic array design and to demonstrate its applicability for future kilopixel arrays, we have chosen to demonstrate a 128 element bolometer array optimized for 2 mm wavelength using a newly built Goddard instrument, GISMO (Goddard /RAM Superconducting 2-millimeter Observer). The arrays are fabricated using batch wafer processing developed and optimized for high pixel yield, low noise, and high uniformity. The molybdenum-gold superconducting transition edge sensors are fabricated using batch sputter deposition and are patterned using dry etch techniques developed at Goddard. With a detector pitch of 2 mm 8x16 array for GISMO occupies nearly one half of the processing area of a 100 mm silicon-on-insulator starting wafer. Two such arrays are produced from a single wafer along with witness samples for process characterization. To provide thermal isolation for the detector elements, at the end of the process over 90% of the silicon must be removed using deep reactive ion etching techniques. The electrical connections for each bolometer element are patterned on the top edge of the square grid supporting the array. The design considerations unique to GISMO, key fabrication challenges, and laboratory experimental results will be presented.

A Robust Sound Source Localization Approach for Microphone Array with Model Errors

NASA Astrophysics Data System (ADS)

Xiao, Hua; Shao, Huai-Zong; Peng, Qi-Cong

In this paper, a robust sound source localization approach is proposed. The approach retains good performance even when model errors exist. Compared with previous work in this field, the contributions of this paper are as follows. First, an improved broad-band and near-field array model is proposed. It takes array gain, phase perturbations into account and is based on the actual positions of the elements. It can be used in arbitrary planar geometry arrays. Second, a subspace model errors estimation algorithm and a Weighted 2-Dimension Multiple Signal Classification (W2D-MUSIC) algorithm are proposed. The subspace model errors estimation algorithm estimates unknown parameters of the array model, i. e., gain, phase perturbations, and positions of the elements, with high accuracy. The performance of this algorithm is improved with the increasing of SNR or number of snapshots. The W2D-MUSIC algorithm based on the improved array model is implemented to locate sound sources. These two algorithms compose the robust sound source approach. The more accurate steering vectors can be provided for further processing such as adaptive beamforming algorithm. Numerical examples confirm effectiveness of this proposed approach.

A permanent magnet tubular linear generator for wave energy conversion

NASA Astrophysics Data System (ADS)

Yu, Haitao; Liu, Chunyuan; Yuan, Bang; Hu, Minqiang; Huang, Lei; Zhou, Shigui

2012-04-01

A novel three-phase permanent magnet tubular linear generator (PMTLG) with Halbach array is proposed for the sea wave energy conversion. Non-linear axi-symmetrical finite element method (FEM) is implemented to calculate the magnetic fields along air-gap for different Halbach arrays of PMTLGs. The PMTLG characteristics are analyzed and the simulation results are validated by the experiment. An assistant tooth is implemented to greatly minimize the end and cogging effects which cause the oscillatory detent force.

High-Resolution Mapping of Structural Mutations in Prostate Cancer with Single Nucleotide Polymorphism Arrays

DTIC Science & Technology

2006-11-01

study of the NCI60 panel of cancer cell lines [39]. More recently, amplifications of NOTCH3 were noted in ovarian tumors by an SNP array analysis...and the functional role of NOTCH3 was suggested by the ability to suppress cell proliferation by inhibiting NOTCH3 [40]. Allele-specific copy...Identified and functionally validated the oncogene MITF. 40 Park JT, Li M, Nakayama K, et al. Notch3 gene amplification in ovarian cancer. Cancer Res

Multiplexed chemiluminescent assays in ArrayPlates for high-throughput measurement of gene expression

NASA Astrophysics Data System (ADS)

Martel, Ralph R.; Rounseville, Matthew P.; Botros, Ihab W.; Seligmann, Bruce E.

2002-06-01

Multiplexed Molecular Profiling (MMP) assays for drug discovery are performed in ArrayPlates. ArrayPlates are 96- well microtiter plates that contain a 16-element array at the bottom of each well. Each element within an array measures one analyte in a sample. A CCD imager records the quantitative chemiluminescent readout of all 1,536 elements in a 96-well plate simultaneously. Since array elements are reagent modifiable by the end-user, ArrayPlates can be adapted to a broad range of nucleic acid- and protein-based assays. Such multiplexed assays are rapidly established, flexible, robust, automation-friendly and cost-effective. Nucleic acid assays in ArrayPlates can detect DNA and RNA, including SNPs and ESTs. A multiplexed mRNA assay to measure the expression of 16 genes is described. The assay combines a homogeneous nuclease protection assay with subsequent probe immobilization to the array by means of a sandwich hybridization followed with chemiluminescent detection. This assay was used to examine cells grown and treated in microplates and avoided cloning, transfection, RNA insolation, reverse transcription, amplification and fluorochrome labeling. Standard deviations for the measurement of 16 genes ranged from 3 percent to 13 percent in samples of 30,000 cells. Such ArrayPlates transcription assays are useful in drug discovery and development for target validation, screening, lead optimization, metabolism and toxicity profiling. Chemiluminescent detection provides ArrayPlates assays with high signal-to-noise readout and simplifies imager requirements. Imaging a 2D surface that contains arrays simplifies lens requirements relative to imaging columns of liquid in microtiter plate wells. The Omix imager for ArrayPlates is described.

Variations of High-Latitude Geomagnetic Pulsation Frequencies: A Comparison of Time-of-Flight Estimates and IMAGE Magnetometer Observations

NASA Astrophysics Data System (ADS)

Sandhu, J. K.; Yeoman, T. K.; James, M. K.; Rae, I. J.; Fear, R. C.

2018-01-01

The fundamental eigenfrequencies of standing Alfvén waves on closed geomagnetic field lines are estimated for the region spanning 5.9≤L < 9.5 over all MLT (Magnetic Local Time). The T96 magnetic field model and a realistic empirical plasma mass density model are employed using the time-of-flight approximation, refining previous calculations that assumed a relatively simplistic mass density model. An assessment of the implications of using different mass density models in the time-of-flight calculations is presented. The calculated frequencies exhibit dependences on field line footprint magnetic latitude and MLT, which are attributed to both magnetic field configuration and spatial variations in mass density. In order to assess the validity of the time-of-flight calculated frequencies, the estimates are compared to observations of FLR (Field Line Resonance) frequencies. Using IMAGE (International Monitor for Auroral Geomagnetic Effects) ground magnetometer observations obtained between 2001 and 2012, an automated FLR identification method is developed, based on the cross-phase technique. The average FLR frequency is determined, including variations with footprint latitude and MLT, and compared to the time-of-flight analysis. The results show agreement in the latitudinal and local time dependences. Furthermore, with the use of the realistic mass density model in the time-of-flight calculations, closer agreement with the observed FLR frequencies is obtained. The study is limited by the latitudinal coverage of the IMAGE magnetometer array, and future work will aim to extend the ground magnetometer data used to include additional magnetometer arrays.

Continuous description of a grain boundary in olivine from atomic scale simulations: the role of disclinations

NASA Astrophysics Data System (ADS)

Cordier, P.; Sun, X.; Fressengeas, C.; Taupin, V.

2015-12-01

A crossover between atomistic description and continuous representation of grain boundaries in polycrystals is set-up to model the periodic arrays of structural units by using dislocation and disclination dipole arrays along grain boundaries. Continuous modeling of the boundary is built by bottom-up processing, meaning that the strain, rotation, curvature, disclination and dislocation density fields are calculated by using the discrete atomic positions generated by molecular dynamics simulations. Continuous modeling of a 18.9° symmetric tilt boundary in copper [1] is conducted as a benchmark case. Its accuracy is validated by comparison with a similar recent technique [2]. Then, results on the 60.8° Mg2SiO4 tilt boundary [3-4] are presented. By linking the atomistic description with continuum mechanics representations, they provide new insights into the structure of the grain boundary. [1] Fressengeas, C., Taupin, V., Capolungo, L., 2014. Continuous modelling of the structure of symmetric tilt boundaries. Int. J. Solids Struct. 51, 1434-1441. [2] Zimmerman, J.A., Bammann, D.J., Gao, H., 2009. Deformation gradients for continuum mechanical analysis of atomistic simulations. Int. J. Solids Struct. 46, 238-253. [3] Cordier, P., Demouchy, S., Beausir, B., Taupin, V., Barou, F., Fressengeas, C., 2014. Disclinations provide the missing mechanism for deforming olivine-rich rocks in the mantle. Nature 507, 51-56. [4] Adjaoud, O., Marquardt, K., Jahn, S., 2012. Atomic structures and energies of grain boundaries in Mg2SiO4 forsterite from atomistic modeling. Phys. Chem. Miner. 39, 749-760.

Probing General Relativity and New Physics with Lunar Laser Ranging

NASA Astrophysics Data System (ADS)

Dell'Agnello, S.; Maiello, M.; Currie, D. G.; Boni, A.; Berardi, S.; Cantone, C.; Delle Monache, G. O.; Intaglietta, N.; Lops, C.; Garattini, M.; Martini, M.; Patrizi, G.; Porcelli, L.; Tibuzzi, M.; Vittori, R.; Bianco, G.; Coradini, A.; Dionisio, C.; March, R.; Bellettini, G.; Tauraso, R.; Chandler, J.

2012-11-01

Over the past 40 years, Lunar Laser Ranging (LLR, developed by the Univ. of Maryland (PI) and INFN-LNF (Co-PI)) to the Apollo Cube Corner Retroreflector (CCR) arrays have supplied almost all the significant tests of General Relativity (Currie et al., 2009 [12]). LLR can evaluate the PPN (Post Newtonian Parameters), addressing this way both the possible changes in the gravitational constant and the self-energy properties of the gravitational field. In addition, the LLR has provided significant information on the composition and origin of the Moon. This is the only Apollo experiment that is still in operation. Initially the Apollo LLR arrays contributed a negligible fraction of the ranging error budget. Over the decades, the ranging capabilities of the ground stations have improved by more than two orders of magnitude. Now, because of the lunar librations, the existing Apollo retroreflector arrays contribute a significant fraction of the limiting errors in the range measurements. We built a new experimental apparatus (the ‘Satellite/Lunar Laser Ranging Characterization Facility', SCF) and created a new test procedure (the SCF-Test) to characterize and model the detailed thermal behavior and the optical performance of cube corner laser retroreflectors in space for industrial and scientific applications (Dell'Agnello et al., 2011 [13]). Our key experimental innovation is the concurrent measurement and modeling of the optical Far Field Diffraction Pattern (FFDP) and the temperature distribution of the SLR retroreflector payload under thermal conditions produced with a close-match solar simulator. The apparatus includes infrared cameras for non-invasive thermometry, thermal control and real-time movement of the payload to experimentally simulate satellite orientation on orbit with respect to both solar illumination and laser interrogation beams. These unique capabilities provide experimental validation of the space segment for SLR and Lunar Laser Ranging (LLR). The primary goal of these innovative tools is to provide critical design and diagnostic capabilities for Satellite Laser Ranging (SLR) to Galileo and other GNSS (Global Navigation Satellite System) constellations. Implementation of new retroreflector designs being studied will help to improve GNSS orbits, which will then increase the accuracy, stability, and distribution of the International Terrestrial Reference Frame (ITRF) [4], to provide better definition of the geocenter (origin) and the scale (length unit). The SCF is also actively used to develop, validate and optimize the second generation LLR arrays for precision gravity and lunar science measurements to be performed with robotic missions of the International Lunar Network in which NASA and ASI participate (ILN). The capability will allow us to optimize the design of GNSS laser retroreflector payloads to maximize ranging efficiency, to improve signal-to-noise conditions in daylight and to provide pre-launch validation of retroreflector performance under laboratory-simulated space conditions. For the MAGIA lunar orbiter Phase A study funded by ASI (Dell'Agnello et al., 2010 [14]), we studied fundamental physics and absolute positioning metrology experiments, to improve test of the gravitational redshift in the Earth-Moon system predicted by General Relativity and a precursor test of our second generation LLR payload.

Digital-computer model of the principal ground-water reservoir in Beryl-Enterprise area, Escalante Desert, Utah

USGS Publications Warehouse

Mower, R.W.; Bartholoma, Scott D.

1981-01-01

The computer model presented in this report was used to simulate the principal ground-water reservoir in the Beryl-Enterprise area, Escalante Desert, Beaver, Iron, and Washington Counties, Utah (Mower, 1981). The details of the formulation of the model, testing of its validity, and the results of predictions are discussed in the cited report. This report was prepared as part of a cooperative program with the Utah Department of Natural Resources, Division of Water Rights, to investigate the water resources of the State. It is an addendum to the principal interpretive report, and it is presented in order to make the model available to anyone desiring to use it for additional predictions. The main program used was the finite-difference model for aquifer simulation in two dimensions documented by Trescott, Pinder, and Larson, (1976). Minor modifications were made to adapt the program to the principal ground-water reservoir in the Beryl-Enterprise area. All the modifications are listed at the top of table 1, and were related to parameter input and output, thus none of the computational subroutines were affected. The parameter arrays (table 1) and map of the area with a grid overlay (pi. 1) are given on following pages. The model simulates an aquifer- under water-table conditions, mostly composed of unconsoliuated basin-fill deposits. The boundaries of the modeled area (pi. 1) generally coincide with the boundaries of the saturated basin fill. However, in the southwest-central part of the model, permeable consolidated rock is included; and that part of the northern boundary between the Black and Wah Wah Mountains is an arbitrary boundary in basin fill between the Beryl-Enterprise area and the Milford area that lies to the northeast. The ignimbrite at Table Butte also was included in the active part of the model. The model includes simulation of discharge by evapotranspiration from phreatophytes. The areal recharge array was used to simulate recharge entering the modeled area at its boundaries and from stream infiltration in the southern corner near Enterprise. In addition, this array included discharge by wells operated during the period simulated as being under steady-state conditions (virtually 1937), and discharging wells simulating flow of water northeast to the Milford area. These wells also were included in the transient-state simulation (1937-77), although any changes in this discharge were modeled using the pumpage array (Group IV, table 1). The wells simulating outflow to the Milford area are shown on plate 1, but the wells pumping in 1937 are not shown unless they also were pumped during 1937-77. The pumpage array was used to simulate: (1) Discharge from wells, (2) discharge after 1977 from a mine in the southwest-central part of the model and recharge resulting form the mine discharge (pi. 1), and (3) changes in discharge in wells operated during the steady-state period. Recharge from irrigation was simulated by reducing pumpage from nodes where irrigation occurs. Discharge from all wells was reduced by 5 percent by multiplying all pumpage by 0.95 in the computer program. North of Newcastle, in T. 35 S., R. 15 W., pumpage was reduced by 35 percent because surface materials are very permeable.

A machine learning approach for gait speed estimation using skin-mounted wearable sensors: From healthy controls to individuals with multiple sclerosis.

PubMed

McGinnis, Ryan S; Mahadevan, Nikhil; Moon, Yaejin; Seagers, Kirsten; Sheth, Nirav; Wright, John A; DiCristofaro, Steven; Silva, Ikaro; Jortberg, Elise; Ceruolo, Melissa; Pindado, Jesus A; Sosnoff, Jacob; Ghaffari, Roozbeh; Patel, Shyamal

2017-01-01

Gait speed is a powerful clinical marker for mobility impairment in patients suffering from neurological disorders. However, assessment of gait speed in coordination with delivery of comprehensive care is usually constrained to clinical environments and is often limited due to mounting demands on the availability of trained clinical staff. These limitations in assessment design could give rise to poor ecological validity and limited ability to tailor interventions to individual patients. Recent advances in wearable sensor technologies have fostered the development of new methods for monitoring parameters that characterize mobility impairment, such as gait speed, outside the clinic, and therefore address many of the limitations associated with clinical assessments. However, these methods are often validated using normal gait patterns; and extending their utility to subjects with gait impairments continues to be a challenge. In this paper, we present a machine learning method for estimating gait speed using a configurable array of skin-mounted, conformal accelerometers. We establish the accuracy of this technique on treadmill walking data from subjects with normal gait patterns and subjects with multiple sclerosis-induced gait impairments. For subjects with normal gait, the best performing model systematically overestimates speed by only 0.01 m/s, detects changes in speed to within less than 1%, and achieves a root-mean-square-error of 0.12 m/s. Extending these models trained on normal gait to subjects with gait impairments yields only minor changes in model performance. For example, for subjects with gait impairments, the best performing model systematically overestimates speed by 0.01 m/s, quantifies changes in speed to within 1%, and achieves a root-mean-square-error of 0.14 m/s. Additional analyses demonstrate that there is no correlation between gait speed estimation error and impairment severity, and that the estimated speeds maintain the clinical significance of ground truth speed in this population. These results support the use of wearable accelerometer arrays for estimating walking speed in normal subjects and their extension to MS patient cohorts with gait impairment.

Comparison of phase velocities from array measurements of Rayleigh waves associated with microtremor and results calculated from borehole shear-wave velocity profiles

USGS Publications Warehouse

Liu, Hsi-Ping; Boore, David M.; Joyner, William B.; Oppenheimer, David H.; Warrick, Richard E.; Zhang, Wenbo; Hamilton, John C.; Brown, Leo T.

2000-01-01

Shear-wave velocities (VS) are widely used for earthquake ground-motion site characterization. VS data are now largely obtained using borehole methods. Drilling holes, however, is expensive. Nonintrusive surface methods are inexpensive for obtaining VS information, but not many comparisons with direct borehole measurements have been published. Because different assumptions are used in data interpretation of each surface method and public safety is involved in site characterization for engineering structures, it is important to validate the surface methods by additional comparisons with borehole measurements. We compare results obtained from a particular surface method (array measurement of surface waves associated with microtremor) with results obtained from borehole methods. Using a 10-element nested-triangular array of 100-m aperture, we measured surface-wave phase velocities at two California sites, Garner Valley near Hemet and Hollister Municipal Airport. The Garner Valley site is located at an ancient lake bed where water-saturated sediment overlies decomposed granite on top of granite bedrock. Our array was deployed at a location where seismic velocities had been determined to a depth of 500 m by borehole methods. At Hollister, where the near-surface sediment consists of clay, sand, and gravel, we determined phase velocities using an array located close to a 60-m deep borehole where downhole velocity logs already exist. Because we want to assess the measurements uncomplicated by uncertainties introduced by the inversion process, we compare our phase-velocity results with the borehole VS depth profile by calculating fundamental-mode Rayleigh-wave phase velocities from an earth model constructed from the borehole data. For wavelengths less than ~2 times of the array aperture at Garner Valley, phase-velocity results from array measurements agree with the calculated Rayleigh-wave velocities to better than 11%. Measurement errors become larger for wavelengths 2 times greater than the array aperture. At Hollister, the measured phase velocity at 3.9 Hz (near the upper edge of the microtremor frequency band) is within 20% of the calculated Rayleigh-wave velocity. Because shear-wave velocity is the predominant factor controlling Rayleigh-wave phase velocities, the comparisons suggest that this nonintrusive method can provide VS information adequate for ground-motion estimation.

Coherent beam control with an all-dielectric transformation optics based lens

NASA Astrophysics Data System (ADS)

Yi, Jianjia; Burokur, Shah Nawaz; Piau, Gérard-Pascal; de Lustrac, André

2016-01-01

Transformation optics (TO) concept well known for its huge possibility in patterning the path of electromagnetic waves is exploited to design a beam steering lens. The broadband directive in-phase emission in a desired off-normal direction from an array of equally fed radiators is numerically and experimentally reported. Such manipulation is achieved without the use of complex and bulky phase shifters as it is the case in classical phased array antennas. The all-dielectric compact low-cost lens prototype presenting a graded permittivity profile is fabricated through three-dimensional (3D) polyjet printing technology. The array of radiators is composed of four planar microstrip antennas realized using standard lithography techniques and is used as excitation source for the lens. To validate the proposed lens, we experimentally demonstrate the broadband focusing properties and in-phase directive emissions deflected from the normal direction. Both the far-field radiation patterns and the near-field distributions are measured and reported. Measurements agree quantitatively and qualitatively with numerical full-wave simulations and confirm the corresponding steering properties. Such experimental validation paves the way to inexpensive easy-made all-dielectric microwave lenses for beam forming and collimation.

Coherent beam control with an all-dielectric transformation optics based lens.

PubMed

Yi, Jianjia; Burokur, Shah Nawaz; Piau, Gérard-Pascal; de Lustrac, André

2016-01-05

Transformation optics (TO) concept well known for its huge possibility in patterning the path of electromagnetic waves is exploited to design a beam steering lens. The broadband directive in-phase emission in a desired off-normal direction from an array of equally fed radiators is numerically and experimentally reported. Such manipulation is achieved without the use of complex and bulky phase shifters as it is the case in classical phased array antennas. The all-dielectric compact low-cost lens prototype presenting a graded permittivity profile is fabricated through three-dimensional (3D) polyjet printing technology. The array of radiators is composed of four planar microstrip antennas realized using standard lithography techniques and is used as excitation source for the lens. To validate the proposed lens, we experimentally demonstrate the broadband focusing properties and in-phase directive emissions deflected from the normal direction. Both the far-field radiation patterns and the near-field distributions are measured and reported. Measurements agree quantitatively and qualitatively with numerical full-wave simulations and confirm the corresponding steering properties. Such experimental validation paves the way to inexpensive easy-made all-dielectric microwave lenses for beam forming and collimation.

Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies

PubMed Central

Euskirchen, Ghia M.; Rozowsky, Joel S.; Wei, Chia-Lin; Lee, Wah Heng; Zhang, Zhengdong D.; Hartman, Stephen; Emanuelsson, Olof; Stolc, Viktor; Weissman, Sherman; Gerstein, Mark B.; Ruan, Yijun; Snyder, Michael

2007-01-01

Recent progress in mapping transcription factor (TF) binding regions can largely be credited to chromatin immunoprecipitation (ChIP) technologies. We compared strategies for mapping TF binding regions in mammalian cells using two different ChIP schemes: ChIP with DNA microarray analysis (ChIP-chip) and ChIP with DNA sequencing (ChIP-PET). We first investigated parameters central to obtaining robust ChIP-chip data sets by analyzing STAT1 targets in the ENCODE regions of the human genome, and then compared ChIP-chip to ChIP-PET. We devised methods for scoring and comparing results among various tiling arrays and examined parameters such as DNA microarray format, oligonucleotide length, hybridization conditions, and the use of competitor Cot-1 DNA. The best performance was achieved with high-density oligonucleotide arrays, oligonucleotides ≥50 bases (b), the presence of competitor Cot-1 DNA and hybridizations conducted in microfluidics stations. When target identification was evaluated as a function of array number, 80%–86% of targets were identified with three or more arrays. Comparison of ChIP-chip with ChIP-PET revealed strong agreement for the highest ranked targets with less overlap for the low ranked targets. With advantages and disadvantages unique to each approach, we found that ChIP-chip and ChIP-PET are frequently complementary in their relative abilities to detect STAT1 targets for the lower ranked targets; each method detected validated targets that were missed by the other method. The most comprehensive list of STAT1 binding regions is obtained by merging results from ChIP-chip and ChIP-sequencing. Overall, this study provides information for robust identification, scoring, and validation of TF targets using ChIP-based technologies. PMID:17568005

Partial differential equation-based localization of a monopole source from a circular array.

PubMed

Ando, Shigeru; Nara, Takaaki; Levy, Tsukassa

2013-10-01

Wave source localization from a sensor array has long been the most active research topics in both theory and application. In this paper, an explicit and time-domain inversion method for the direction and distance of a monopole source from a circular array is proposed. The approach is based on a mathematical technique, the weighted integral method, for signal/source parameter estimation. It begins with an exact form of the source-constraint partial differential equation that describes the unilateral propagation of wide-band waves from a single source, and leads to exact algebraic equations that include circular Fourier coefficients (phase mode measurements) as their coefficients. From them, nearly closed-form, single-shot and multishot algorithms are obtained that is suitable for use with band-pass/differential filter banks. Numerical evaluation and several experimental results obtained using a 16-element circular microphone array are presented to verify the validity of the proposed method.

Realization of multiple orbital angular momentum modes simultaneously through four-dimensional antenna arrays.

PubMed

Sun, Chao; Yang, Shiwen; Chen, Yikai; Guo, Jixin; Qu, Shiwei

2018-01-09

Electromagnetic waves carrying orbital angular momentum (OAM) in radio frequency range have drawn great attention owing to its potential applications in increasing communication capacity. In this paper, both single-pole single-throw (SPST) switches and single-pole double-throw (SPDT) switches are designed and implemented. Optimal time sequence allows four-dimensional (4-D) circular antenna array to generate multiple OAM-carrying waves as well as enhance the field intensity of each OAM-carrying wave. A novel experimental platform is developed to measure the phase distribution when the transmitting antenna and the receiving antenna operate at different frequencies. The good agreement between the measurement and simulation results demonstrate that 4-D circular antenna array is able to generate multiple OAM modes simultaneously. Furthermore, the superiority of the 4-D circular antenna array in receiving and demodulating multiple OAM-carrying signals is validated through the filter and bit error rate (BER) simulations.

Development and Validation of a Reliable and Robust Method for the Analysis of Cannabinoids and Terpenes in Cannabis.

PubMed

Giese, Matthew W; Lewis, Mark A; Giese, Laura; Smith, Kevin M

2015-01-01

The requirements for an acceptable cannabis assay have changed dramatically over the years resulting in a large number of laboratories using a diverse array of analytical methodologies that have not been properly validated. Due to the lack of sufficiently validated methods, we conducted a single- laboratory validation study for the determination of cannabinoids and terpenes in a variety of commonly occurring cultivars. The procedure involves high- throughput homogenization to prepare sample extract, which is then profiled for cannabinoids and terpenes by HPLC-diode array detector and GC-flame ionization detector, respectively. Spike recovery studies for terpenes in the range of 0.03-1.5% were carried out with analytical standards, while recovery studies for Δ9-tetrahydrocannabinolic acid, cannabidiolic acid, Δ9-tetrahydrocannabivarinic acid, and cannabigerolic acid and their neutral counterparts in the range of 0.3-35% were carried out using cannabis extracts. In general, accuracy at all levels was within 5%, and RSDs were less than 3%. The interday and intraday repeatabilities of the procedure were evaluated with five different cultivars of varying chemotype, again resulting in acceptable RSDs. As an example of the application of this assay, it was used to illustrate the variability seen in cannabis coming from very advanced indoor cultivation operations.

Solar array electrical performance assessment for Space Station Freedom

NASA Technical Reports Server (NTRS)

Smith, Bryan K.; Brisco, Holly

1993-01-01

Electrical power for Space Station Freedom will be generated by large Photovoltaic arrays with a beginning of life power requirement of 30.8 kW per array. The solar arrays will operate in a Low Earth Orbit (LEO) over a design life of fifteen years. This paper provides an analysis of the predicted solar array electrical performance over the design life and presents a summary of supporting analysis and test data for the assigned model parameters and performance loss factors. Each model parameter and loss factor is assessed based upon program requirements, component analysis, and test data to date. A description of the LMSC performance model, future test plans, and predicted performance ranges are also given.

Solar array electrical performance assessment for Space Station Freedom

NASA Technical Reports Server (NTRS)

Smith, Bryan K.; Brisco, Holly

1993-01-01

Electrical power for Space Station Freedom will be generated by large photovoltaic arrays with a beginning of life power requirement of 30.8 kW per array. The solar arrays will operate in a Low Earth Orbit (LEO) over a design life of fifteen years. This paper provides an analysis of the predicted solar array electrical performance over the design life and presents a summary of supporting analysis and test data for the assigned model parameters and performance loss factors. Each model parameter and loss factor is assessed based upon program requirements, component analysis and test data to date. A description of the LMSC performance model future test plans and predicted performance ranges are also given.

Numerical Modeling of Thermal Edge Flow

NASA Astrophysics Data System (ADS)

Ibrayeva, Aizhan

A gas flow can be induced between two interdigitated arrays of thin vanes, when one of the arrays is uniformly heated or cooled. Sharply curved isotherms near the vane edges leads to momentum imbalance among incident particles, which creates Knudsen force to the vane and thermal edge flow in a gas. The flow is observed in a rarefied gas, when the mean free path of the molecules are comparable with the characteristic length scale of the system. In order to understand a physical mechanism of the flow and Knudsen force, the configuration was numerically investigated under different gas rarefication degrees and temperature gradients in the system by direct simulation Monte Carlo (DSMC) method. From simulations, the highest force value is obtained when Knudsen number is around 0.5 and becomes negligible in free molecular and continuum regimes. DSMC results are analyzed from the theoretical point of view and compared to experimental data. Validation of the simulations is done by the RKDG method. An effect of various geometric parameters to the performance of the actuator was investigated and suggestions were made for improved design of the device.

Using Delft3D to Simulate Current Energy Conversion

NASA Astrophysics Data System (ADS)

James, S. C.; Chartrand, C.; Roberts, J.

2015-12-01

As public concern with renewable energy increases, current energy conversion (CEC) technology is being developed to optimize energy output and minimize environmental impact. CEC turbines generate energy from tidal and current systems and create wakes that interact with turbines located downstream of a device. The placement of devices can greatly influence power generation and structural reliability. CECs can also alter the ecosystem process surrounding the turbines, such as flow regimes, sediment dynamics, and water quality. Software is needed to investigate specific CEC sites to simulate power generation and hydrodynamic responses of a flow through a CEC turbine array. This work validates Delft3D against several flume experiments by simulating the power generation and hydrodynamic response of flow through a turbine or actuator disc(s). Model parameters are then calibrated against these data sets to reproduce momentum removal and wake recovery data with 3-D flow simulations. Simulated wake profiles and turbulence intensities compare favorably to the experimental data and demonstrate the utility and accuracy of a fast-running tool for future siting and analysis of CEC arrays in complex domains.

PLL Based Energy Efficient PV System with Fuzzy Logic Based Power Tracker for Smart Grid Applications.

PubMed

Rohini, G; Jamuna, V

This work aims at improving the dynamic performance of the available photovoltaic (PV) system and maximizing the power obtained from it by the use of cascaded converters with intelligent control techniques. Fuzzy logic based maximum power point technique is embedded on the first conversion stage to obtain the maximum power from the available PV array. The cascading of second converter is needed to maintain the terminal voltage at grid potential. The soft-switching region of three-stage converter is increased with the proposed phase-locked loop based control strategy. The proposed strategy leads to reduction in the ripple content, rating of components, and switching losses. The PV array is mathematically modeled and the system is simulated and the results are analyzed. The performance of the system is compared with the existing maximum power point tracking algorithms. The authors have endeavored to accomplish maximum power and improved reliability for the same insolation of the PV system. Hardware results of the system are also discussed to prove the validity of the simulation results.

PLL Based Energy Efficient PV System with Fuzzy Logic Based Power Tracker for Smart Grid Applications

PubMed Central

Rohini, G.; Jamuna, V.

2016-01-01

This work aims at improving the dynamic performance of the available photovoltaic (PV) system and maximizing the power obtained from it by the use of cascaded converters with intelligent control techniques. Fuzzy logic based maximum power point technique is embedded on the first conversion stage to obtain the maximum power from the available PV array. The cascading of second converter is needed to maintain the terminal voltage at grid potential. The soft-switching region of three-stage converter is increased with the proposed phase-locked loop based control strategy. The proposed strategy leads to reduction in the ripple content, rating of components, and switching losses. The PV array is mathematically modeled and the system is simulated and the results are analyzed. The performance of the system is compared with the existing maximum power point tracking algorithms. The authors have endeavored to accomplish maximum power and improved reliability for the same insolation of the PV system. Hardware results of the system are also discussed to prove the validity of the simulation results. PMID:27294189

A Flexible Arrayed Eddy Current Sensor for Inspection of Hollow Axle Inner Surfaces.

PubMed

Sun, Zhenguo; Cai, Dong; Zou, Cheng; Zhang, Wenzeng; Chen, Qiang

2016-06-23

A reliable and accurate inspection of the hollow axle inner surface is important for the safe operation of high-speed trains. In order to improve the reliability of the inspection, a flexible arrayed eddy current sensor for non-destructive testing of the hollow axle inner surface was designed, fabricated and characterized. The sensor, consisting of two excitation traces and 28 sensing traces, was developed by using the flexible printed circuit board (FPCB) technique to conform the geometric features of the inner surfaces of the hollow axles. The main innovative aspect of the sensor was the new arrangement of excitation/sensing traces to achieve a differential configuration. Finite element model was established to analyze sensor responses and to determine the optimal excitation frequency. Experimental validations were conducted on a specimen with several artificial defects. Results from experiments and simulations were consistent with each other, with the maximum relative error less than 4%. Both results proved that the sensor was capable of detecting longitudinal and transverse defects with the depth of 0.5 mm under the optimal excitation frequency of 0.9 MHz.

Predicting the performance of airborne antennas in the microwave regime

NASA Astrophysics Data System (ADS)

Carroll, David P.

1990-12-01

This study investigated the application of a high-frequency model (Uniform Geometrical Theory of Diffraction) of electromagnetic sources mounted on a curved surface of a complex structure. In particular, the purpose of the study was to determine if the model could be used to predict the radiation patterns of cavity-backed spiral antennas mounted on aircraft fuselages so that the optimum locations for the antennas could be chosen during the aircraft design phase. A review of literature revealed a good deal of work in modeling communications, navigation, identification antennas (blade monopoles and aperture slots) mounted on a wide variety of aircraft fuselages and successful validation against quarter-scale model measurements. This study developed a monopole-array model of a spiral antenna's radiation at vertical polarization and an ellipsoid-plate model of the FB-111A. Using the antenna and aircraft models, the existing Uniform Geometrical Theory of Diffraction model generated radiation patterns which agreed favorably with full-scale measured data. The study includes plots of predicted and measured radiation patterns from 2.5 to 15 Gigahertz.

Ligand- and structure-based in silico studies to identify kinesin spindle protein (KSP) inhibitors as potential anticancer agents.

PubMed

Balakumar, Chandrasekaran; Ramesh, Muthusamy; Tham, Chuin Lean; Khathi, Samukelisiwe Pretty; Kozielski, Frank; Srinivasulu, Cherukupalli; Hampannavar, Girish A; Sayyad, Nisar; Soliman, Mahmoud E; Karpoormath, Rajshekhar

2017-11-29

Kinesin spindle protein (KSP) belongs to the kinesin superfamily of microtubule-based motor proteins. KSP is responsible for the establishment of the bipolar mitotic spindle which mediates cell division. Inhibition of KSP expedites the blockade of the normal cell cycle during mitosis through the generation of monoastral MT arrays that finally cause apoptotic cell death. As KSP is highly expressed in proliferating/cancer cells, it has gained considerable attention as a potential drug target for cancer chemotherapy. Therefore, this study envisaged to design novel KSP inhibitors by employing computational techniques/tools such as pharmacophore modelling, virtual database screening, molecular docking and molecular dynamics. Initially, the pharmacophore models were generated from the data-set of highly potent KSP inhibitors and the pharmacophore models were validated against in house test set ligands. The validated pharmacophore model was then taken for database screening (Maybridge and ChemBridge) to yield hits, which were further filtered for their drug-likeliness. The potential hits retrieved from virtual database screening were docked using CDOCKER to identify the ligand binding landscape. The top-ranked hits obtained from molecular docking were progressed to molecular dynamics (AMBER) simulations to deduce the ligand binding affinity. This study identified MB-41570 and CB-10358 as potential hits and evaluated these experimentally using in vitro KSP ATPase inhibition assays.

The Engineering Development Array: A Low Frequency Radio Telescope Utilising SKA Precursor Technology

NASA Astrophysics Data System (ADS)

Wayth, Randall; Sokolowski, Marcin; Booler, Tom; Crosse, Brian; Emrich, David; Grootjans, Robert; Hall, Peter J.; Horsley, Luke; Juswardy, Budi; Kenney, David; Steele, Kim; Sutinjo, Adrian; Tingay, Steven J.; Ung, Daniel; Walker, Mia; Williams, Andrew; Beardsley, A.; Franzen, T. M. O.; Johnston-Hollitt, M.; Kaplan, D. L.; Morales, M. F.; Pallot, D.; Trott, C. M.; Wu, C.

2017-08-01

We describe the design and performance of the Engineering Development Array, which is a low-frequency radio telescope comprising 256 dual-polarisation dipole antennas working as a phased array. The Engineering Development Array was conceived of, developed, and deployed in just 18 months via re-use of Square Kilometre Array precursor technology and expertise, specifically from the Murchison Widefield Array radio telescope. Using drift scans and a model for the sky brightness temperature at low frequencies, we have derived the Engineering Development Array's receiver temperature as a function of frequency. The Engineering Development Array is shown to be sky-noise limited over most of the frequency range measured between 60 and 240 MHz. By using the Engineering Development Array in interferometric mode with the Murchison Widefield Array, we used calibrated visibilities to measure the absolute sensitivity of the array. The measured array sensitivity matches very well with a model based on the array layout and measured receiver temperature. The results demonstrate the practicality and feasibility of using Murchison Widefield Array-style precursor technology for Square Kilometre Array-scale stations. The modular architecture of the Engineering Development Array allows upgrades to the array to be rolled out in a staged approach. Future improvements to the Engineering Development Array include replacing the second stage beamformer with a fully digital system, and to transition to using RF-over-fibre for the signal output from first stage beamformers.

A Specialized Multi-Transmit Head Coil for High Resolution fMRI of the Human Visual Cortex at 7T.

PubMed

Sengupta, Shubharthi; Roebroeck, Alard; Kemper, Valentin G; Poser, Benedikt A; Zimmermann, Jan; Goebel, Rainer; Adriany, Gregor

2016-01-01

To design, construct and validate radiofrequency (RF) transmit and receive phased array coils for high-resolution visual cortex imaging at 7 Tesla. A 4 channel transmit and 16 channel receive array was constructed on a conformal polycarbonate former. Transmit field efficiency and homogeneity were simulated and validated, along with the Specific Absorption Rate, using [Formula: see text] mapping techniques and electromagnetic simulations. Receiver signal-to-noise ratio (SNR), temporal SNR (tSNR) across EPI time series, g-factors for accelerated imaging and noise correlations were evaluated and compared with a commercial 32 channel whole head coil. The performance of the coil was further evaluated with human subjects through functional MRI (fMRI) studies at standard and submillimeter resolutions of upto 0.8mm isotropic. The transmit and receive sections were characterized using bench tests and showed good interelement decoupling, preamplifier decoupling and sample loading. SNR for the 16 channel coil was ∼ 1.5 times that of the commercial coil in the human occipital lobe, and showed better g-factor values for accelerated imaging. fMRI tests conducted showed better response to Blood Oxygen Level Dependent (BOLD) activation, at resolutions of 1.2mm and 0.8mm isotropic. The 4 channel phased array transmit coil provides homogeneous excitation across the visual cortex, which, in combination with the dual row 16 channel receive array, makes for a valuable research tool for high resolution anatomical and functional imaging of the visual cortex at 7T.

A functional gene array for detection of bacterial virulence elements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jaing, C

2007-11-01

We report our development of the first of a series of microarrays designed to detect pathogens with known mechanisms of virulence and antibiotic resistance. By targeting virulence gene families as well as genes unique to specific biothreat agents, these arrays will provide important data about the pathogenic potential and drug resistance profiles of unknown organisms in environmental samples. To validate our approach, we developed a first generation array targeting genes from Escherichia coli strains K12 and CFT073, Enterococcus faecalis and Staphylococcus aureus. We determined optimal probe design parameters for microorganism detection and discrimination, measured the required target concentration, and assessedmore » tolerance for mismatches between probe and target sequences. Mismatch tolerance is a priority for this application, due to DNA sequence variability among members of gene families. Arrays were created using the NimbleGen Maskless Array Synthesizer at Lawrence Livermore National Laboratory. Purified genomic DNA from combinations of one or more of the four target organisms, pure cultures of four related organisms, and environmental aerosol samples with spiked-in genomic DNA were hybridized to the arrays. Based on the success of this prototype, we plan to design further arrays in this series, with the goal of detecting all known virulence and antibiotic resistance gene families in a greatly expanded set of organisms.« less

Inspection design using 2D phased array, TFM and cueMAP software

DOE Office of Scientific and Technical Information (OSTI.GOV)

McGilp, Ailidh; Dziewierz, Jerzy; Lardner, Tim

2014-02-18

A simulation suite, cueMAP, has been developed to facilitate the design of inspection processes and sparse 2D array configurations. At the core of cueMAP is a Total Focusing Method (TFM) imaging algorithm that enables computer assisted design of ultrasonic inspection scenarios, including the design of bespoke array configurations to match the inspection criteria. This in-house developed TFM code allows for interactive evaluation of image quality indicators of ultrasonic imaging performance when utilizing a 2D phased array working in FMC/TFM mode. The cueMAP software uses a series of TFM images to build a map of resolution, contrast and sensitivity of imagingmore » performance of a simulated reflector, swept across the inspection volume. The software takes into account probe properties, wedge or water standoff, and effects of specimen curvature. In the validation process of this new software package, two 2D arrays have been evaluated on 304n stainless steel samples, typical of the primary circuit in nuclear plants. Thick section samples have been inspected using a 1MHz 2D matrix array. Due to the processing efficiency of the software, the data collected from these array configurations has been used to investigate the influence sub-aperture operation on inspection performance.« less

Top-Mounted Propulsion Test Plans (TMP17)

NASA Technical Reports Server (NTRS)

Bridges, James; Henderson, Brenda; Huff, Dennis

2017-01-01

NASA recently completed a study of propulsion cycles and nozzle types applicable to a 70-passenger, M1.6 supersonic airliner, paying especial attention to the noise produced during landing and take-off. The results of the study were validated in a model-scale test at NASA Glenn last summer. The findings of that study and test, along with other studies, have resulted in a new strategy for achieving the Commercial Supersonic Technologys goals for noise and performance. Key to that strategy is moving the propulsion to the top-side of the vehicle and modifying the nozzle and inlet to maximally shield the propulsion noise while maintaining efficient operation. Installed exhaust configurations have been designed to minimize the exhaust noise using new acoustic design tools. A test planned for the fall of 2017 will validate both the new design tools and the low-noise concept using a new translating phased array. During the test, questions regarding modifications of convected waves in the jet near-field that are key to new understandings of aft jet noise will be addressed. Also, to better tie rig results to real-world measurements, a model-scale version of a nozzle that was flight tested by Glenn Research Center in 2001 will be tested.

16-channel bow tie antenna transceiver array for cardiac MR at 7.0 tesla.

PubMed

Oezerdem, Celal; Winter, Lukas; Graessl, Andreas; Paul, Katharina; Els, Antje; Weinberger, Oliver; Rieger, Jan; Kuehne, Andre; Dieringer, Matthias; Hezel, Fabian; Voit, Dirk; Frahm, Jens; Niendorf, Thoralf

2016-06-01

To design, evaluate, and apply a bow tie antenna transceiver radiofrequency (RF) coil array tailored for cardiac MRI at 7.0 Tesla (T). The radiofrequency (RF) coil array comprises 16 building blocks each containing a bow tie shaped λ/2-dipole antenna. Numerical simulations were used for transmission field homogenization and RF safety validation. RF characteristics were examined in a phantom study. The array's suitability for high spatial resolution two-dimensional (2D) CINE imaging and for real time imaging of the heart was examined in a volunteer study. The arrays transmission fields and RF characteristics are suitable for cardiac MRI at 7.0T. The coil performance afforded a spatial resolution as good as (0.8 × 0.8 × 2.5) mm(3) for segmented 2D CINE MRI at 7.0T which is by a factor of 12 superior versus standardized protocols used in clinical practice at 1.5T. The proposed transceiver array supports 1D acceleration factors of up to R = 6 without impairing image quality significantly. The 16-channel bow tie antenna transceiver array supports accelerated and high spatial resolution cardiac MRI. The array is compatible with multichannel transmission and provides a technological basis for future clinical assessment of parallel transmission techniques at 7.0 Tesla. Magn Reson Med 75:2553-2565, 2016. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

Pulsars Probe the Low-Frequency Gravitational Sky: Pulsar Timing Arrays Basics and Recent Results

NASA Astrophysics Data System (ADS)

Tiburzi, Caterina

2018-03-01

Pulsar Timing Array experiments exploit the clock-like behaviour of an array of millisecond pulsars, with the goal of detecting low-frequency gravitational waves. Pulsar Timing Array experiments have been in operation over the last decade, led by groups in Europe, Australia, and North America. These experiments use the most sensitive radio telescopes in the world, extremely precise pulsar timing models and sophisticated detection algorithms to increase the sensitivity of Pulsar Timing Arrays. No detection of gravitational waves has been made to date with this technique, but Pulsar Timing Array upper limits already contributed to rule out some models of galaxy formation. Moreover, a new generation of radio telescopes, such as the Five hundred metre Aperture Spherical Telescope and, in particular, the Square Kilometre Array, will offer a significant improvement to the Pulsar Timing Array sensitivity. In this article, we review the basic concepts of Pulsar Timing Array experiments, and discuss the latest results from the established Pulsar Timing Array collaborations.

DNA methylation array analysis identifies breast cancer associated RPTOR, MGRN1 and RAPSN hypomethylation in peripheral blood DNA.

PubMed

Tang, Qiuqiong; Holland-Letz, Tim; Slynko, Alla; Cuk, Katarina; Marme, Frederik; Schott, Sarah; Heil, Jörg; Qu, Bin; Golatta, Michael; Bewerunge-Hudler, Melanie; Sutter, Christian; Surowy, Harald; Wappenschmidt, Barbara; Schmutzler, Rita; Hoth, Markus; Bugert, Peter; Bartram, Claus R; Sohn, Christof; Schneeweiss, Andreas; Yang, Rongxi; Burwinkel, Barbara

2016-09-27

DNA methylation changes in peripheral blood DNA have been shown to be associated with solid tumors. We sought to identify methylation alterations in whole blood DNA that are associated with breast cancer (BC). Epigenome-wide DNA methylation profiling on blood DNA from BC cases and healthy controls was performed by applying Infinium HumanMethylation450K BeadChips. Promising CpG sites were selected and validated in three independent larger sample cohorts via MassARRAY EpiTyper assays. CpG sites located in three genes (cg06418238 in RPTOR, cg00736299 in MGRN1 and cg27466532 in RAPSN), which showed significant hypomethylation in BC patients compared to healthy controls in the discovery cohort (p < 1.00 x 10-6) were selected and successfully validated in three independent cohorts (validation I, n =211; validation II, n=378; validation III, n=520). The observed methylation differences are likely not cell-type specific, as the differences were only seen in whole blood, but not in specific sub cell-types of leucocytes. Moreover, we observed in quartile analysis that women in the lower methylation quartiles of these three loci had higher ORs than women in the higher quartiles. The combined AUC of three loci was 0.79 (95%CI 0.73-0.85) in validation cohort I, and was 0.60 (95%CI 0.54-0.66) and 0.62 (95%CI 0.57-0.67) in validation cohort II and III, respectively. Our study suggests that hypomethylation of CpG sites in RPTOR, MGRN1 and RAPSN in blood is associated with BC and might serve as blood-based marker supplements for BC if these could be verified in prospective studies.

Application of a Geographic Information System for regridding a ground-water flow model of the Columbia Plateau Regional Aquifer System, Walla Walla River basin, Oregon-Washington

USGS Publications Warehouse

Darling, M.E.; Hubbard, L.E.

1994-01-01

Computerized Geographic Information Systems (GIS) have become viable and valuable tools for managing,analyzing, creating, and displaying data for three-dimensional finite-difference ground-water flow models. Three GIS applications demonstrated in this study are: (1) regridding of data arrays from an existing large-area, low resolution ground-water model to a smaller, high resolution grid; (2) use of GIS techniques for assembly of data-input arrays for a ground-water model; and (3) use of GIS for rapid display of data for verification, for checking of ground-water model output, and for the cre.ation of customized maps for use in reports. The Walla Walla River Basin was selected as the location for the demonstration because (1) data from a low resolution ground-water model (Columbia Plateau Regional Aquifer System Analysis [RASA]) were available and (2) concern for long-term use of water resources for irrigation in the basin. The principal advantage of regridding is that it may provide the ability to more precisely calibrate a model, assuming chat a more detailed coverage of data is available, and to evaluate the numerical errors associated with a particular grid design.Regridding gave about an 8-fold increase in grid-node density.Several FORTRAN programs were developed to load the regridded ground-water data into a finite-difference modular model as model-compatible input files for use in a steady-state model run.To facilitate the checking and validating of the GIS regridding process, maps and tabular reports were produced for each of eight ground-water parameters by model layer. Also, an automated subroutine that was developed to view the model-calculated water levels in cross-section will aid in the synthesis and interpretation of model results.

Dynamical analysis of surface-insulated planar wire array Z-pinches

NASA Astrophysics Data System (ADS)

Li, Yang; Sheng, Liang; Hei, Dongwei; Li, Xingwen; Zhang, Jinhai; Li, Mo; Qiu, Aici

2018-05-01

The ablation and implosion dynamics of planar wire array Z-pinches with and without surface insulation are compared and discussed in this paper. This paper first presents a phenomenological model named the ablation and cascade snowplow implosion (ACSI) model, which accounts for the ablation and implosion phases of a planar wire array Z-pinch in a single simulation. The comparison between experimental data and simulation results shows that the ACSI model could give a fairly good description about the dynamical characteristics of planar wire array Z-pinches. Surface insulation introduces notable differences in the ablation phase of planar wire array Z-pinches. The ablation phase is divided into two stages: insulation layer ablation and tungsten wire ablation. The two-stage ablation process of insulated wires is simulated in the ACSI model by updating the formulas describing the ablation process.

Microtremor exploration for shallow S-wave velocity structure in Bandung Basin, Indonesia

NASA Astrophysics Data System (ADS)

Pramatadie, Andi Muhamad; Yamanaka, Hiroaki; Chimoto, Kosuke; Afnimar Collaboration; Koketsu, Kazuki; Sakaue, Minoru; Miyake, Hiroe; Sengara, I. Wayan; Sadisun, Imam A.

2017-05-01

We have conducted a microtremor survey for shallow S-wave velocity profiles to be used for seismic hazard evaluation in the Bandung Basin, Indonesia. In the survey, two arrays were deployed temporarily at each of 29 sites, by installing seven vertical sensors in triangular configurations with side lengths from 1 to 16 m. Records of vertical microtremors from each array were used to estimate Rayleigh wave phase velocity spectra using the spatial autocorrelation method, as well as the horizontal-to-vertical spectral ratio obtained at the centre of the arrays. Phase velocities at sites on the basin margin exhibit higher values than those obtained in the central part of the basin, in a frequency range of 7 to 30 Hz. The phase velocity data were used to deduce S-wave velocity profiles of shallow soil using a hybrid heuristic inversion method. We validated our inversion models by comparing observed horizontal-to-vertical spectral ratios with ellipticities of the fundamental mode of Rayleigh waves, calculated for the inversion models. The S-wave velocity profiles in the area can be characterised by two soft layers over a firm engineering basement that has an S-wave velocity of 500 m/s. The S-wave velocities of the two layers are 120 and 280 m/s on average. The distribution of the averaged S-wave velocity in the top 30 m clearly indicates low values in the eastern central part and high values in the edge of the basin. The amplification is large in the areas with low velocity layers. In addition, we have proposed an empirical relation between the amplification factor and the topographical slope in the area.

Infrared focal plane performance in the South Atlantic anomaly

NASA Technical Reports Server (NTRS)

Junga, Frank A.

1989-01-01

Proton-induced pulse height distributions (PHD's) in Si:XX detectors were studied analytically and experimentally. In addition, a preliminary design for a flight experiment to characterize the response of Si:XX detectors to the trapped proton environment and verify PHD models was developed. PHD's were computed for two orbit altitudes for a variety of shielding configurations. Most of the proton-induced pulses have amplitudes less that about 3.5 x 10(exp 5) e-h pairs. Shielding has a small effect on the shape of the PHD's. The primary effect of shielding is to reduce the total number of pulses produced. Proton-induced PHD's in a Si:Sb focal plane array bombarded by a unidirectional 67-MeV beam were measured. The maximum pulse height recorded was 6 x 10(exp 5) pairs. The distribution had two peaks: the larger peak corresponded to 3.8 x 10(exp 5) pairs and the smaller peak to 1.2 x 10(exp 5) pairs. The maximum pulse height and the larger peak are within a factor of two of predicted values. The low-energy peak was not expected, but is believed to be an artifact of inefficient charge collection in the detector. The planned flight experiment will be conducted on a Space Shuttle flight. Lockheed's helium extended life dewar (HELD) will be used to provide the required cryogenic environment for the detector. Two bulk Si:Sb arrays and two Si:As impurity band conduction arrays will be tested. The tests will be conducted while the Space Shuttle passes through the South Atlantic Anomaly. PHD's will be recorded and responsivity changes tracked. This experiment will provide a new database on proton-induced PHD's, compare two infrared detector technologies in a space environment, and provide the data necessary to validate PHD modeling.

Genome-Wide Prediction and Validation of Peptides That Bind Human Prosurvival Bcl-2 Proteins

PubMed Central

DeBartolo, Joe; Taipale, Mikko; Keating, Amy E.

2014-01-01

Programmed cell death is regulated by interactions between pro-apoptotic and prosurvival members of the Bcl-2 family. Pro-apoptotic family members contain a weakly conserved BH3 motif that can adopt an alpha-helical structure and bind to a groove on prosurvival partners Bcl-xL, Bcl-w, Bcl-2, Mcl-1 and Bfl-1. Peptides corresponding to roughly 13 reported BH3 motifs have been verified to bind in this manner. Due to their short lengths and low sequence conservation, BH3 motifs are not detected using standard sequence-based bioinformatics approaches. Thus, it is possible that many additional proteins harbor BH3-like sequences that can mediate interactions with the Bcl-2 family. In this work, we used structure-based and data-based Bcl-2 interaction models to find new BH3-like peptides in the human proteome. We used peptide SPOT arrays to test candidate peptides for interaction with one or more of the prosurvival proteins Bcl-xL, Bcl-w, Bcl-2, Mcl-1 and Bfl-1. For the 36 most promising array candidates, we quantified binding to all five human receptors using direct and competition binding assays in solution. All 36 peptides showed evidence of interaction with at least one prosurvival protein, and 22 peptides bound at least one prosurvival protein with a dissociation constant between 1 and 500 nM; many peptides had specificity profiles not previously observed. We also screened the full-length parent proteins of a subset of array-tested peptides for binding to Bcl-xL and Mcl-1. Finally, we used the peptide binding data, in conjunction with previously reported interactions, to assess the affinity and specificity prediction performance of different models. PMID:24967846

Microreactor Array Device

NASA Astrophysics Data System (ADS)

Wiktor, Peter; Brunner, Al; Kahn, Peter; Qiu, Ji; Magee, Mitch; Bian, Xiaofang; Karthikeyan, Kailash; Labaer, Joshua

2015-03-01

We report a device to fill an array of small chemical reaction chambers (microreactors) with reagent and then seal them using pressurized viscous liquid acting through a flexible membrane. The device enables multiple, independent chemical reactions involving free floating intermediate molecules without interference from neighboring reactions or external environments. The device is validated by protein expressed in situ directly from DNA in a microarray of ~10,000 spots with no diffusion during three hours incubation. Using the device to probe for an autoantibody cancer biomarker in blood serum sample gave five times higher signal to background ratio compared to standard protein microarray expressed on a flat microscope slide. Physical design principles to effectively fill the array of microreactors with reagent and experimental results of alternate methods for sealing the microreactors are presented.

Mutual coupling, channel model, and BER for curvilinear antenna arrays

NASA Astrophysics Data System (ADS)

Huang, Zhiyong

This dissertation introduces a wireless communications system with an adaptive beam-former and investigates its performance with different antenna arrays. Mutual coupling, real antenna elements and channel models are included to examine the system performance. In a beamforming system, mutual coupling (MC) among the elements can significantly degrade the system performance. However, MC effects can be compensated if an accurate model of mutual coupling is available. A mutual coupling matrix model is utilized to compensate mutual coupling in the beamforming of a uniform circular array (UCA). Its performance is compared with other models in uplink and downlink beamforming scenarios. In addition, the predictions are compared with measurements and verified with results from full-wave simulations. In order to accurately investigate the minimum mean-square-error (MSE) of an adaptive array in MC, two different noise models, the environmental and the receiver noise, are modeled. The minimum MSEs with and without data domain MC compensation are analytically compared. The influence of mutual coupling on the convergence is also examined. In addition, the weight compensation method is proposed to attain the desired array pattern. Adaptive arrays with different geometries are implemented with the minimum MSE algorithm in the wireless communications system to combat interference at the same frequency. The bit-error-rate (BER) of systems with UCA, uniform rectangular array (URA) and UCA with center element are investigated in additive white Gaussian noise plus well-separated signals or random direction signals scenarios. The output SINR of an adaptive array with multiple interferers is analytically examined. The influence of the adaptive algorithm convergence on the BER is investigated. The UCA is then investigated in a narrowband Rician fading channel. The channel model is built and the space correlations are examined. The influence of the number of signal paths, number of the interferers, Doppler spread and convergence are investigated. The tracking mode is introduced to the adaptive array system, and it further improves the BER. The benefit of using faster data rate (wider bandwidth) is discussed. In order to have better performance in a 3D space, the geometries of uniform spherical array (USAs) are presented and different configurations of USAs are discussed. The LMS algorithm based on temporal a priori information is applied to UCAs and USAs to beamform the patterns. Their performances are compared based on simulation results. Based on the analytical and simulation results, it can be concluded that mutual coupling slightly influences the performance of the adaptive array in communication systems. In addition, arrays with curvilinear geometries perform well in AWGN and fading channels.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhuang, Jinda; Ju, Y. Sungtaek, E-mail: just@seas.ucla.edu

One major challenge in incorporating flexible electronics or optoelectronics on curved surfaces is the requirement of significant stretchability. We report a tunable platform for incorporating flexible and yet non-stretching device layers on a hemisphere. In this configuration, an array of planar petals contractively maps onto the surface of an inflatable hemisphere through elastocapillary interactions mediated by an interface liquid. A mechanical model is developed to elucidate the dependence of the conformality of the petal structures on their elastic modulus and thickness and the liquid surface tension. The modeling results are validated against experimental results obtained using petal structures of differentmore » thicknesses, restoring elastic spring elements of different spring constants, and liquids with different surface tension coefficients. Our platform will enable facile integration of non-stretching electronic and optoelectronic components prepared using established planar fabrication techniques on tunable hemispherical surfaces.« less

Acoustic Parametric Array for Identifying Standoff Targets

NASA Astrophysics Data System (ADS)

Hinders, M. K.; Rudd, K. E.

2010-02-01

An integrated simulation method for investigating nonlinear sound beams and 3D acoustic scattering from any combination of complicated objects is presented. A standard finite-difference simulation method is used to model pulsed nonlinear sound propagation from a source to a scattering target via the KZK equation. Then, a parallel 3D acoustic simulation method based on the finite integration technique is used to model the acoustic wave interaction with the target. Any combination of objects and material layers can be placed into the 3D simulation space to study the resulting interaction. Several example simulations are presented to demonstrate the simulation method and 3D visualization techniques. The combined simulation method is validated by comparing experimental and simulation data and a demonstration of how this combined simulation method assisted in the development of a nonlinear acoustic concealed weapons detector is also presented.